Query 048639
Match_columns 1139
No_of_seqs 731 out of 4173
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 20:04:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048639.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048639hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 7E-186 2E-190 1827.2 122.3 1121 4-1138 154-1320(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 3E-163 9E-168 1607.8 110.0 1121 4-1137 126-1273(1284)
3 4f4c_A Multidrug resistance pr 100.0 3.4E-91 1.2E-95 923.4 71.0 577 546-1135 57-654 (1321)
4 3qf4_A ABC transporter, ATP-bi 100.0 4.3E-84 1.5E-88 792.2 70.9 567 556-1137 15-581 (587)
5 3qf4_B Uncharacterized ABC tra 100.0 1E-83 3.6E-88 791.3 63.8 569 551-1137 25-593 (598)
6 3g5u_A MCG1178, multidrug resi 100.0 6.3E-84 2.2E-88 852.1 60.8 574 549-1135 33-626 (1284)
7 4a82_A Cystic fibrosis transme 100.0 1.1E-82 3.8E-87 779.9 64.3 564 557-1135 7-577 (578)
8 3b5x_A Lipid A export ATP-bind 100.0 4.6E-81 1.6E-85 767.0 74.3 561 558-1135 19-580 (582)
9 3b60_A Lipid A export ATP-bind 100.0 4.4E-81 1.5E-85 767.2 70.2 561 558-1135 19-580 (582)
10 2yl4_A ATP-binding cassette SU 100.0 5.3E-81 1.8E-85 768.5 69.4 566 559-1137 14-586 (595)
11 3qf4_A ABC transporter, ATP-bi 100.0 7E-79 2.4E-83 746.0 61.1 486 8-495 85-579 (587)
12 4a82_A Cystic fibrosis transme 100.0 5.7E-79 1.9E-83 747.1 56.8 485 8-494 83-576 (578)
13 3qf4_B Uncharacterized ABC tra 100.0 5.9E-78 2E-82 740.3 52.1 471 21-495 121-591 (598)
14 3b5x_A Lipid A export ATP-bind 100.0 2.8E-76 9.5E-81 724.6 64.9 470 21-494 109-579 (582)
15 2yl4_A ATP-binding cassette SU 100.0 2.2E-76 7.5E-81 727.4 62.0 474 21-495 106-584 (595)
16 3b60_A Lipid A export ATP-bind 100.0 3E-76 1E-80 724.3 61.5 470 21-494 109-579 (582)
17 3bk7_A ABC transporter ATP-bin 100.0 1.8E-66 6.1E-71 632.1 30.0 450 256-1121 83-563 (607)
18 2iw3_A Elongation factor 3A; a 100.0 4E-65 1.4E-69 636.5 39.8 196 255-481 434-634 (986)
19 1yqt_A RNAse L inhibitor; ATP- 100.0 2.7E-66 9.3E-71 625.2 26.9 201 885-1121 287-493 (538)
20 3ux8_A Excinuclease ABC, A sub 100.0 3.6E-65 1.2E-69 636.9 32.3 204 272-481 31-297 (670)
21 3ozx_A RNAse L inhibitor; ATP 100.0 6.2E-64 2.1E-68 602.2 26.7 202 885-1121 269-477 (538)
22 3nh6_A ATP-binding cassette SU 100.0 1.5E-63 5E-68 555.2 26.3 279 845-1137 14-292 (306)
23 3j16_B RLI1P; ribosome recycli 100.0 1.5E-62 5.2E-67 595.8 27.1 200 889-1122 350-560 (608)
24 3nh6_A ATP-binding cassette SU 100.0 9.6E-61 3.3E-65 532.5 25.9 277 217-495 14-290 (306)
25 2ff7_A Alpha-hemolysin translo 100.0 1.9E-53 6.6E-58 463.0 31.0 240 884-1134 6-245 (247)
26 2ghi_A Transport protein; mult 100.0 3.2E-52 1.1E-56 457.0 29.4 242 884-1137 16-257 (260)
27 2ff7_A Alpha-hemolysin translo 100.0 7.1E-52 2.4E-56 450.7 29.9 238 255-493 6-244 (247)
28 2ixe_A Antigen peptide transpo 100.0 5.6E-52 1.9E-56 457.5 28.5 244 883-1135 14-258 (271)
29 2vf7_A UVRA2, excinuclease ABC 100.0 1.4E-51 4.6E-56 511.6 34.4 215 884-1125 501-831 (842)
30 1mv5_A LMRA, multidrug resista 100.0 2.1E-52 7.2E-57 454.8 20.2 237 886-1135 2-239 (243)
31 2ghi_A Transport protein; mult 100.0 5.2E-51 1.8E-55 447.4 28.3 239 255-494 16-254 (260)
32 2ixe_A Antigen peptide transpo 100.0 7E-51 2.4E-55 448.7 28.0 240 255-494 15-257 (271)
33 3pih_A Uvrabc system protein A 100.0 1.3E-50 4.3E-55 506.9 31.8 220 884-1130 588-911 (916)
34 3gd7_A Fusion complex of cysti 100.0 1.8E-50 6.1E-55 463.8 28.3 235 882-1129 16-250 (390)
35 1mv5_A LMRA, multidrug resista 100.0 2.6E-51 9E-56 446.2 19.4 236 257-494 2-238 (243)
36 2cbz_A Multidrug resistance-as 100.0 1.8E-48 6.3E-53 421.4 24.7 230 885-1137 3-232 (237)
37 3gd7_A Fusion complex of cysti 100.0 2.4E-48 8.1E-53 446.2 24.8 227 254-483 17-243 (390)
38 2pze_A Cystic fibrosis transme 100.0 6E-48 2E-52 415.5 25.9 222 884-1131 5-227 (229)
39 2pze_A Cystic fibrosis transme 100.0 8.5E-48 2.9E-52 414.3 24.3 221 255-490 5-226 (229)
40 2cbz_A Multidrug resistance-as 100.0 6.7E-48 2.3E-52 417.0 23.5 225 256-495 3-230 (237)
41 2r6f_A Excinuclease ABC subuni 100.0 4.5E-47 1.5E-51 469.4 30.8 212 885-1124 629-945 (972)
42 3tui_C Methionine import ATP-b 100.0 1.1E-47 3.8E-52 433.5 23.1 228 884-1130 23-262 (366)
43 3gfo_A Cobalt import ATP-bindi 100.0 5.8E-47 2E-51 416.6 25.5 223 256-487 7-238 (275)
44 3tui_C Methionine import ATP-b 100.0 4.6E-47 1.6E-51 428.5 23.9 222 255-483 23-254 (366)
45 3tif_A Uncharacterized ABC tra 100.0 2.6E-47 8.9E-52 411.9 18.9 217 257-480 2-232 (235)
46 3gfo_A Cobalt import ATP-bindi 100.0 3.9E-47 1.3E-51 418.0 20.4 217 885-1122 7-234 (275)
47 3tif_A Uncharacterized ABC tra 100.0 3.6E-47 1.2E-51 410.8 19.3 217 886-1120 2-233 (235)
48 2olj_A Amino acid ABC transpor 100.0 2.5E-46 8.6E-51 409.3 23.6 220 885-1127 24-254 (263)
49 1ji0_A ABC transporter; ATP bi 100.0 2.9E-46 9.8E-51 405.4 23.8 219 256-483 6-229 (240)
50 2ygr_A Uvrabc system protein A 100.0 1.9E-45 6.5E-50 456.8 33.7 213 885-1124 647-963 (993)
51 1ji0_A ABC transporter; ATP bi 100.0 4.2E-46 1.4E-50 404.1 22.0 215 885-1122 6-229 (240)
52 4g1u_C Hemin import ATP-bindin 100.0 5.3E-46 1.8E-50 408.3 21.9 216 885-1122 11-238 (266)
53 3fvq_A Fe(3+) IONS import ATP- 100.0 7.1E-46 2.4E-50 419.1 23.0 225 885-1131 4-238 (359)
54 3rlf_A Maltose/maltodextrin im 100.0 5.1E-46 1.7E-50 422.9 21.6 222 885-1130 3-232 (381)
55 4g1u_C Hemin import ATP-bindin 100.0 9.1E-46 3.1E-50 406.4 22.7 218 256-483 11-238 (266)
56 2olj_A Amino acid ABC transpor 100.0 1.8E-45 6.1E-50 402.5 24.5 218 256-483 24-249 (263)
57 1b0u_A Histidine permease; ABC 100.0 1.2E-45 3.9E-50 405.4 22.7 220 885-1127 6-248 (262)
58 3fvq_A Fe(3+) IONS import ATP- 100.0 7.9E-46 2.7E-50 418.7 21.5 219 256-484 4-230 (359)
59 1vpl_A ABC transporter, ATP-bi 100.0 1.1E-45 3.8E-50 403.0 21.9 215 884-1122 14-236 (256)
60 3rlf_A Maltose/maltodextrin im 100.0 1.8E-45 6.2E-50 418.4 23.2 216 256-483 3-224 (381)
61 1g6h_A High-affinity branched- 100.0 3.2E-45 1.1E-49 401.4 23.5 219 256-479 7-239 (257)
62 2yz2_A Putative ABC transporte 100.0 3.8E-45 1.3E-49 402.6 23.9 215 886-1123 3-229 (266)
63 1g6h_A High-affinity branched- 100.0 4.7E-45 1.6E-49 400.1 23.4 211 885-1118 7-239 (257)
64 2pcj_A ABC transporter, lipopr 100.0 2.8E-45 9.7E-50 393.3 20.9 208 885-1115 4-222 (224)
65 1vpl_A ABC transporter, ATP-bi 100.0 6.5E-45 2.2E-49 396.9 24.0 217 255-482 14-235 (256)
66 2pcj_A ABC transporter, lipopr 100.0 3.4E-45 1.2E-49 392.6 21.4 211 256-476 4-222 (224)
67 2yyz_A Sugar ABC transporter, 100.0 6.7E-45 2.3E-49 413.0 24.4 220 885-1128 3-230 (359)
68 2it1_A 362AA long hypothetical 100.0 4.3E-45 1.5E-49 415.0 22.0 220 885-1128 3-230 (362)
69 1b0u_A Histidine permease; ABC 100.0 7.1E-45 2.4E-49 399.2 22.9 218 256-483 6-243 (262)
70 1z47_A CYSA, putative ABC-tran 100.0 5.1E-45 1.8E-49 412.7 22.4 222 884-1128 13-242 (355)
71 2ihy_A ABC transporter, ATP-bi 100.0 2.6E-45 8.9E-50 405.2 19.3 215 885-1122 21-253 (279)
72 2bbs_A Cystic fibrosis transme 100.0 7.8E-45 2.7E-49 402.8 22.4 217 883-1130 38-255 (290)
73 2yyz_A Sugar ABC transporter, 100.0 1E-44 3.5E-49 411.4 23.9 217 256-484 3-225 (359)
74 2ihy_A ABC transporter, ATP-bi 100.0 6.6E-45 2.3E-49 402.0 21.2 218 255-483 20-253 (279)
75 1v43_A Sugar-binding transport 100.0 1.2E-44 4.1E-49 412.9 23.6 220 885-1128 11-238 (372)
76 2onk_A Molybdate/tungstate ABC 100.0 7.2E-45 2.4E-49 393.0 20.4 211 886-1123 2-218 (240)
77 2bbs_A Cystic fibrosis transme 100.0 1.2E-44 4E-49 401.4 22.1 216 254-489 38-254 (290)
78 3d31_A Sulfate/molybdate ABC t 100.0 1.1E-44 3.6E-49 410.2 21.7 218 886-1128 2-224 (348)
79 2it1_A 362AA long hypothetical 100.0 2E-44 6.7E-49 409.6 24.0 216 256-483 3-224 (362)
80 1z47_A CYSA, putative ABC-tran 100.0 9.7E-45 3.3E-49 410.4 21.3 218 255-483 13-236 (355)
81 1oxx_K GLCV, glucose, ABC tran 100.0 9.1E-45 3.1E-49 412.6 20.6 222 885-1128 3-237 (353)
82 2onk_A Molybdate/tungstate ABC 100.0 1.9E-44 6.6E-49 389.6 22.1 211 257-482 2-216 (240)
83 2qi9_C Vitamin B12 import ATP- 100.0 1.5E-44 5.2E-49 392.3 21.4 209 885-1121 4-222 (249)
84 2yz2_A Putative ABC transporte 100.0 2.4E-44 8.2E-49 396.2 22.9 213 256-482 2-227 (266)
85 1v43_A Sugar-binding transport 100.0 2.3E-44 7.8E-49 410.6 23.0 216 256-483 11-232 (372)
86 3d31_A Sulfate/molybdate ABC t 100.0 3.8E-44 1.3E-48 405.6 23.4 211 257-484 2-219 (348)
87 2d2e_A SUFC protein; ABC-ATPas 100.0 1.8E-44 6.3E-49 393.7 20.0 210 886-1118 4-230 (250)
88 1oxx_K GLCV, glucose, ABC tran 100.0 1.7E-44 5.8E-49 410.4 20.3 219 256-484 3-232 (353)
89 2qi9_C Vitamin B12 import ATP- 100.0 6.3E-44 2.2E-48 387.4 23.4 208 256-482 4-222 (249)
90 1g29_1 MALK, maltose transport 100.0 2.1E-44 7.2E-49 412.0 20.4 220 885-1128 3-236 (372)
91 1g29_1 MALK, maltose transport 100.0 6.2E-44 2.1E-48 408.1 21.7 216 256-483 3-230 (372)
92 2zu0_C Probable ATP-dependent 100.0 3.9E-44 1.3E-48 394.4 18.3 216 885-1121 20-254 (267)
93 2d2e_A SUFC protein; ABC-ATPas 100.0 5.5E-44 1.9E-48 390.0 16.9 214 256-479 3-230 (250)
94 2pjz_A Hypothetical protein ST 100.0 2E-43 6.9E-48 386.3 20.0 208 886-1122 2-216 (263)
95 2zu0_C Probable ATP-dependent 100.0 1.1E-42 3.8E-47 382.8 24.9 216 256-481 20-253 (267)
96 2pjz_A Hypothetical protein ST 100.0 2.9E-43 9.8E-48 385.1 19.7 207 257-482 2-215 (263)
97 2nq2_C Hypothetical ABC transp 100.0 4.1E-43 1.4E-47 382.8 19.3 203 885-1122 4-218 (253)
98 2nq2_C Hypothetical ABC transp 100.0 1.1E-42 3.8E-47 379.3 20.6 204 256-483 4-218 (253)
99 1sgw_A Putative ABC transporte 100.0 3.2E-42 1.1E-46 364.8 16.4 194 256-471 10-210 (214)
100 1sgw_A Putative ABC transporte 100.0 2.3E-42 7.8E-47 366.0 13.8 195 885-1110 10-210 (214)
101 1tf7_A KAIC; homohexamer, hexa 100.0 9.1E-38 3.1E-42 378.6 -0.9 170 271-471 24-212 (525)
102 2v9p_A Replication protein E1; 100.0 2.3E-38 7.9E-43 350.8 -14.9 233 822-1135 42-276 (305)
103 3bk7_A ABC transporter ATP-bin 100.0 5.6E-34 1.9E-38 346.6 17.4 201 256-482 357-563 (607)
104 2v9p_A Replication protein E1; 100.0 1.5E-37 5E-42 344.4 -14.2 239 188-495 36-276 (305)
105 1yqt_A RNAse L inhibitor; ATP- 100.0 5.1E-34 1.8E-38 343.9 14.9 201 256-482 287-493 (538)
106 3ozx_A RNAse L inhibitor; ATP 100.0 1.7E-33 5.7E-38 338.2 17.4 202 255-482 268-477 (538)
107 2iw3_A Elongation factor 3A; a 100.0 8E-34 2.7E-38 354.9 13.2 205 256-476 671-981 (986)
108 3j16_B RLI1P; ribosome recycli 100.0 4.8E-32 1.6E-36 328.8 18.7 198 260-483 350-560 (608)
109 3ux8_A Excinuclease ABC, A sub 100.0 3.6E-32 1.2E-36 339.1 14.0 206 901-1129 31-306 (670)
110 3pih_A Uvrabc system protein A 100.0 8.9E-30 3E-34 318.9 17.8 209 273-491 598-911 (916)
111 2r6f_A Excinuclease ABC subuni 100.0 9.1E-29 3.1E-33 306.4 17.4 211 256-485 629-945 (972)
112 2vf7_A UVRA2, excinuclease ABC 100.0 1.4E-28 4.6E-33 305.8 18.0 216 255-484 501-829 (842)
113 2npi_A Protein CLP1; CLP1-PCF1 100.0 7E-32 2.4E-36 317.5 -12.2 192 884-1121 117-338 (460)
114 2ygr_A Uvrabc system protein A 100.0 3.8E-28 1.3E-32 302.1 17.6 217 255-490 646-968 (993)
115 4aby_A DNA repair protein RECN 100.0 1.9E-28 6.3E-33 289.7 13.2 201 902-1113 49-380 (415)
116 4aby_A DNA repair protein RECN 99.9 7.3E-28 2.5E-32 284.6 16.2 200 274-474 50-380 (415)
117 2npi_A Protein CLP1; CLP1-PCF1 99.9 5.5E-30 1.9E-34 301.4 -6.6 193 276-491 129-348 (460)
118 1e69_A Chromosome segregation 99.9 8.4E-26 2.9E-30 256.6 15.8 195 276-471 16-301 (322)
119 1e69_A Chromosome segregation 99.9 1.9E-25 6.5E-30 253.7 15.7 202 906-1119 17-311 (322)
120 3b85_A Phosphate starvation-in 99.9 1.3E-27 4.5E-32 252.1 -8.3 158 272-470 13-171 (208)
121 3b85_A Phosphate starvation-in 99.9 7.1E-27 2.4E-31 246.5 -2.9 159 901-1110 13-172 (208)
122 1z6g_A Guanylate kinase; struc 99.9 5.5E-27 1.9E-31 250.8 -11.5 166 902-1107 11-193 (218)
123 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 2.1E-23 7.2E-28 240.1 15.8 84 390-473 274-364 (365)
124 4gp7_A Metallophosphoesterase; 99.9 6.7E-25 2.3E-29 225.4 2.4 150 906-1102 1-168 (171)
125 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 8.1E-24 2.8E-28 243.5 11.6 83 1021-1112 276-364 (365)
126 1ye8_A Protein THEP1, hypothet 99.9 8.3E-25 2.8E-29 225.3 2.6 147 287-473 2-159 (178)
127 4gp7_A Metallophosphoesterase; 99.9 1.2E-24 4E-29 223.6 2.5 149 277-463 1-168 (171)
128 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.3E-25 4.4E-30 254.4 -5.8 150 888-1118 151-300 (330)
129 1ye8_A Protein THEP1, hypothet 99.9 5.1E-24 1.7E-28 219.4 4.4 148 916-1113 2-160 (178)
130 1z6g_A Guanylate kinase; struc 99.9 5.7E-26 1.9E-30 243.0 -12.0 166 273-468 11-193 (218)
131 1tq4_A IIGP1, interferon-induc 99.9 1.2E-24 4E-29 251.3 -7.0 175 902-1103 37-248 (413)
132 2dpy_A FLII, flagellum-specifi 99.9 2.3E-24 7.8E-29 252.4 -5.9 200 884-1121 130-344 (438)
133 1tq4_A IIGP1, interferon-induc 99.9 3.8E-24 1.3E-28 247.0 -5.8 167 272-463 36-247 (413)
134 2dpy_A FLII, flagellum-specifi 99.9 4.5E-24 1.6E-28 249.9 -5.8 193 255-481 130-343 (438)
135 2pt7_A CAG-ALFA; ATPase, prote 99.9 2.9E-23 1E-27 235.1 -0.4 131 274-470 160-291 (330)
136 2o5v_A DNA replication and rep 99.8 9.8E-21 3.4E-25 215.3 15.4 81 395-480 265-354 (359)
137 3b9q_A Chloroplast SRP recepto 99.8 3.2E-22 1.1E-26 223.2 -0.3 175 275-471 90-284 (302)
138 2f1r_A Molybdopterin-guanine d 99.8 8.5E-23 2.9E-27 208.0 -6.0 111 915-1046 3-125 (171)
139 3sop_A Neuronal-specific septi 99.8 3.6E-22 1.2E-26 219.6 -1.8 147 287-458 4-154 (270)
140 3aez_A Pantothenate kinase; tr 99.8 3.3E-23 1.1E-27 232.4 -10.4 176 882-1109 40-246 (312)
141 3b9q_A Chloroplast SRP recepto 99.8 5.5E-22 1.9E-26 221.4 -0.6 176 904-1111 90-285 (302)
142 2o5v_A DNA replication and rep 99.8 4E-20 1.4E-24 210.3 14.2 82 1024-1120 265-355 (359)
143 3aez_A Pantothenate kinase; tr 99.8 1.2E-22 4E-27 227.9 -8.4 143 253-428 40-209 (312)
144 3sop_A Neuronal-specific septi 99.8 8.9E-22 3.1E-26 216.4 -2.8 147 916-1097 4-154 (270)
145 2og2_A Putative signal recogni 99.8 2.5E-21 8.6E-26 219.6 0.7 173 276-470 148-340 (359)
146 2i3b_A HCR-ntpase, human cance 99.8 9.9E-22 3.4E-26 203.9 -3.5 173 914-1132 1-182 (189)
147 2og2_A Putative signal recogni 99.8 4.1E-21 1.4E-25 217.9 0.2 175 905-1111 148-342 (359)
148 1znw_A Guanylate kinase, GMP k 99.8 5.1E-22 1.8E-26 210.8 -7.3 175 272-467 9-202 (207)
149 1znw_A Guanylate kinase, GMP k 99.8 1.1E-21 3.6E-26 208.3 -5.3 169 901-1106 9-202 (207)
150 2eyu_A Twitching motility prot 99.8 8.2E-23 2.8E-27 223.5 -15.2 183 886-1094 6-241 (261)
151 2obl_A ESCN; ATPase, hydrolase 99.8 9.9E-21 3.4E-25 215.0 1.4 194 255-480 44-253 (347)
152 2ewv_A Twitching motility prot 99.8 3.4E-22 1.2E-26 230.2 -12.6 175 902-1095 126-353 (372)
153 1lvg_A Guanylate kinase, GMP k 99.8 7.8E-22 2.7E-26 207.5 -9.0 159 911-1107 1-173 (198)
154 3qkt_A DNA double-strand break 99.8 3.9E-18 1.3E-22 194.8 17.3 77 391-467 244-327 (339)
155 2i3b_A HCR-ntpase, human cance 99.8 1.3E-20 4.4E-25 195.5 -3.7 158 285-474 1-168 (189)
156 2f1r_A Molybdopterin-guanine d 99.8 4.6E-21 1.6E-25 195.2 -7.0 111 286-417 3-125 (171)
157 2obl_A ESCN; ATPase, hydrolase 99.8 4.6E-20 1.6E-24 209.6 0.3 198 885-1121 45-255 (347)
158 2eyu_A Twitching motility prot 99.8 1.3E-19 4.4E-24 198.2 3.7 132 273-468 15-147 (261)
159 4ad8_A DNA repair protein RECN 99.8 1.2E-18 4E-23 210.7 12.2 78 393-470 394-474 (517)
160 1cr0_A DNA primase/helicase; R 99.8 6.5E-19 2.2E-23 197.8 9.0 181 273-471 23-237 (296)
161 2o8b_B DNA mismatch repair pro 99.7 3.9E-18 1.3E-22 218.0 13.1 171 255-478 749-938 (1022)
162 1cr0_A DNA primase/helicase; R 99.7 2.2E-18 7.5E-23 193.6 7.8 183 902-1110 23-237 (296)
163 2o8b_B DNA mismatch repair pro 99.7 6.8E-18 2.3E-22 215.8 12.8 174 884-1118 749-939 (1022)
164 1tf7_A KAIC; homohexamer, hexa 99.7 5.7E-18 1.9E-22 205.0 11.0 152 279-470 275-444 (525)
165 1lw7_A Transcriptional regulat 99.7 1.1E-19 3.8E-24 210.1 -3.8 148 903-1052 157-329 (365)
166 3qkt_A DNA double-strand break 99.7 4.7E-17 1.6E-21 185.8 18.0 79 1022-1109 246-332 (339)
167 2ewv_A Twitching motility prot 99.7 1.3E-20 4.5E-25 216.9 -13.0 175 273-456 126-353 (372)
168 4ad8_A DNA repair protein RECN 99.7 1.4E-17 4.9E-22 201.1 11.4 76 1023-1108 395-473 (517)
169 2jeo_A Uridine-cytidine kinase 99.7 1.2E-18 4.3E-23 189.7 0.3 167 900-1121 11-187 (245)
170 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 4.4E-17 1.5E-21 161.3 11.0 82 390-471 52-142 (148)
171 3asz_A Uridine kinase; cytidin 99.7 3.4E-19 1.2E-23 189.7 -6.0 142 911-1093 3-161 (211)
172 1w1w_A Structural maintenance 99.7 8.5E-17 2.9E-21 190.1 13.1 74 394-467 332-410 (430)
173 1ewq_A DNA mismatch repair pro 99.7 1.7E-17 5.7E-22 206.0 6.9 159 254-474 548-716 (765)
174 3thx_A DNA mismatch repair pro 99.7 1.7E-16 5.9E-21 200.2 16.0 168 255-481 630-812 (934)
175 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 9.7E-17 3.3E-21 158.9 10.8 89 1013-1110 41-142 (148)
176 4a74_A DNA repair and recombin 99.7 1.3E-17 4.3E-22 180.0 4.6 148 281-470 21-201 (231)
177 1pzn_A RAD51, DNA repair and r 99.7 6.5E-18 2.2E-22 192.9 2.4 168 903-1120 119-314 (349)
178 1w1w_A Structural maintenance 99.7 2.1E-16 7.2E-21 186.7 15.2 74 1024-1106 333-410 (430)
179 1pzn_A RAD51, DNA repair and r 99.7 6.5E-18 2.2E-22 192.9 2.2 166 273-480 118-313 (349)
180 2jeo_A Uridine-cytidine kinase 99.7 2.5E-18 8.5E-23 187.4 -1.4 166 271-481 11-186 (245)
181 1pui_A ENGB, probable GTP-bind 99.7 4.9E-18 1.7E-22 180.4 0.5 169 886-1071 4-197 (210)
182 1lw7_A Transcriptional regulat 99.7 8.7E-19 3E-23 202.5 -6.3 175 274-480 157-353 (365)
183 2ehv_A Hypothetical protein PH 99.7 2.2E-17 7.7E-22 180.4 4.9 181 886-1106 7-206 (251)
184 2ehv_A Hypothetical protein PH 99.7 2.9E-18 9.9E-23 187.5 -2.5 179 257-468 7-207 (251)
185 1lvg_A Guanylate kinase, GMP k 99.7 1E-19 3.6E-24 191.3 -14.8 158 283-468 2-173 (198)
186 3szr_A Interferon-induced GTP- 99.7 2.5E-18 8.6E-23 210.5 -4.9 190 256-481 10-236 (608)
187 2gza_A Type IV secretion syste 99.6 9.4E-19 3.2E-23 201.0 -8.7 149 887-1038 137-301 (361)
188 3szr_A Interferon-induced GTP- 99.6 1.3E-18 4.6E-23 212.9 -8.3 193 885-1120 10-236 (608)
189 2gza_A Type IV secretion syste 99.6 6E-20 2E-24 211.0 -19.2 222 180-408 52-300 (361)
190 1rj9_A FTSY, signal recognitio 99.6 5.4E-17 1.9E-21 181.0 4.5 151 284-456 101-260 (304)
191 3asz_A Uridine kinase; cytidin 99.6 2.3E-18 7.8E-23 183.2 -6.6 140 282-454 3-161 (211)
192 4a74_A DNA repair and recombin 99.6 9.2E-17 3.1E-21 173.2 5.6 149 910-1108 21-200 (231)
193 3jvv_A Twitching mobility prot 99.6 6.9E-17 2.4E-21 183.9 4.8 147 889-1108 92-246 (356)
194 3thx_A DNA mismatch repair pro 99.6 3.4E-16 1.2E-20 197.5 11.3 176 884-1119 630-811 (934)
195 2qnr_A Septin-2, protein NEDD5 99.6 1.7E-17 5.9E-22 185.7 -1.7 163 260-456 2-169 (301)
196 3jvv_A Twitching mobility prot 99.6 9.7E-17 3.3E-21 182.7 4.3 147 260-469 92-246 (356)
197 1ewq_A DNA mismatch repair pro 99.6 2.6E-16 8.9E-21 195.3 6.3 147 883-1099 548-704 (765)
198 1rj9_A FTSY, signal recognitio 99.6 2.6E-16 8.9E-21 175.5 5.6 165 913-1109 101-284 (304)
199 2qag_C Septin-7; cell cycle, c 99.6 6.5E-17 2.2E-21 187.4 0.6 166 255-457 10-180 (418)
200 1pui_A ENGB, probable GTP-bind 99.6 4.3E-17 1.5E-21 173.0 -1.2 168 257-442 4-197 (210)
201 1odf_A YGR205W, hypothetical 3 99.6 5.2E-18 1.8E-22 188.1 -9.1 129 913-1059 30-169 (290)
202 2qag_C Septin-7; cell cycle, c 99.6 1.1E-16 3.8E-21 185.5 0.6 166 884-1096 10-180 (418)
203 3thx_B DNA mismatch repair pro 99.6 5.8E-16 2E-20 194.7 6.0 167 256-471 640-814 (918)
204 2w0m_A SSO2452; RECA, SSPF, un 99.6 4.7E-16 1.6E-20 167.9 4.4 166 272-470 9-193 (235)
205 3kta_B Chromosome segregation 99.6 3.7E-15 1.3E-19 151.4 10.7 80 392-471 61-146 (173)
206 2qnr_A Septin-2, protein NEDD5 99.6 1E-16 3.4E-21 179.5 -2.0 165 889-1095 2-169 (301)
207 1odf_A YGR205W, hypothetical 3 99.6 4.5E-17 1.5E-21 180.6 -6.7 129 284-430 30-169 (290)
208 3kta_B Chromosome segregation 99.6 9.2E-15 3.1E-19 148.6 10.8 80 1022-1111 62-147 (173)
209 2w0m_A SSO2452; RECA, SSPF, un 99.5 3.6E-15 1.2E-19 160.9 7.5 167 901-1108 9-192 (235)
210 1wb9_A DNA mismatch repair pro 99.5 2.2E-15 7.5E-20 188.1 5.5 167 255-475 576-751 (800)
211 1s96_A Guanylate kinase, GMP k 99.5 2.5E-15 8.4E-20 159.7 4.2 141 909-1121 11-160 (219)
212 2qag_B Septin-6, protein NEDD5 99.5 2.8E-15 9.7E-20 172.5 4.3 178 885-1091 16-217 (427)
213 1s96_A Guanylate kinase, GMP k 99.5 1.2E-15 4.1E-20 162.1 0.1 142 280-481 11-159 (219)
214 2qag_B Septin-6, protein NEDD5 99.5 5E-15 1.7E-19 170.4 5.2 179 256-452 16-217 (427)
215 3thx_B DNA mismatch repair pro 99.5 1.3E-14 4.5E-19 182.5 7.5 159 884-1101 639-804 (918)
216 1nlf_A Regulatory protein REPA 99.5 5.9E-14 2E-18 155.9 11.3 151 281-457 26-184 (279)
217 1nij_A Hypothetical protein YJ 99.5 2.2E-16 7.6E-21 178.4 -9.4 153 286-455 5-190 (318)
218 3c8u_A Fructokinase; YP_612366 99.5 1.6E-16 5.3E-21 168.6 -10.9 114 911-1052 19-140 (208)
219 1nij_A Hypothetical protein YJ 99.5 7.5E-16 2.6E-20 174.0 -6.6 149 915-1093 5-189 (318)
220 2cvh_A DNA repair and recombin 99.5 6E-14 2.1E-18 149.8 8.4 151 273-469 7-185 (220)
221 1zp6_A Hypothetical protein AT 99.5 6.4E-15 2.2E-19 153.8 0.2 138 910-1069 5-146 (191)
222 2cvh_A DNA repair and recombin 99.5 4.4E-14 1.5E-18 150.9 6.6 154 901-1108 6-185 (220)
223 1nlf_A Regulatory protein REPA 99.4 1E-13 3.5E-18 154.0 8.9 153 910-1096 26-184 (279)
224 2qm8_A GTPase/ATPase; G protei 99.4 2.1E-15 7.3E-20 171.3 -5.2 175 886-1071 30-259 (337)
225 1zp6_A Hypothetical protein AT 99.4 1.9E-15 6.4E-20 157.9 -5.5 138 281-440 5-146 (191)
226 1wb9_A DNA mismatch repair pro 99.4 3.6E-14 1.2E-18 177.3 4.5 167 884-1112 576-749 (800)
227 3c8u_A Fructokinase; YP_612366 99.4 9.9E-16 3.4E-20 162.4 -11.2 134 282-456 19-160 (208)
228 2yhs_A FTSY, cell division pro 99.4 3.1E-13 1E-17 157.2 6.1 150 275-452 283-447 (503)
229 1n0w_A DNA repair protein RAD5 99.4 1.1E-12 3.7E-17 142.4 9.4 148 910-1108 20-209 (243)
230 2bdt_A BH3686; alpha-beta prot 99.3 2.1E-16 7.3E-21 164.9 -19.4 171 914-1120 2-183 (189)
231 1n0w_A DNA repair protein RAD5 99.3 7.8E-13 2.7E-17 143.5 8.0 146 281-469 20-209 (243)
232 1htw_A HI0065; nucleotide-bind 99.3 9.9E-14 3.4E-18 139.2 -0.9 88 260-356 11-99 (158)
233 1p9r_A General secretion pathw 99.3 9.5E-15 3.3E-19 169.5 -9.8 142 886-1047 144-314 (418)
234 2bdt_A BH3686; alpha-beta prot 99.3 3.9E-15 1.3E-19 155.2 -12.1 164 285-480 2-182 (189)
235 2yhs_A FTSY, cell division pro 99.3 1.5E-12 5.1E-17 151.5 8.3 158 905-1095 284-450 (503)
236 2oap_1 GSPE-2, type II secreti 99.3 1.1E-14 3.9E-19 173.5 -11.4 174 902-1100 248-458 (511)
237 2rcn_A Probable GTPase ENGC; Y 99.3 7.7E-13 2.6E-17 149.4 4.0 122 273-410 204-328 (358)
238 2qm8_A GTPase/ATPase; G protei 99.3 1.4E-13 4.7E-18 156.3 -2.7 177 258-441 31-258 (337)
239 1htw_A HI0065; nucleotide-bind 99.3 2.2E-13 7.6E-18 136.6 -0.9 87 889-984 11-97 (158)
240 3auy_A DNA double-strand break 99.3 6.1E-12 2.1E-16 145.3 10.4 75 393-467 278-359 (371)
241 2rcn_A Probable GTPase ENGC; Y 99.3 8.7E-13 3E-17 149.0 2.9 122 903-1040 205-329 (358)
242 2bbw_A Adenylate kinase 4, AK4 99.3 2E-13 6.8E-18 148.6 -3.2 137 284-442 26-197 (246)
243 2oap_1 GSPE-2, type II secreti 99.3 3.8E-14 1.3E-18 168.9 -10.0 174 273-461 248-458 (511)
244 1p9r_A General secretion pathw 99.2 1.1E-14 3.6E-19 169.1 -14.9 129 274-419 158-315 (418)
245 1sxj_E Activator 1 40 kDa subu 99.2 5.9E-12 2E-16 144.9 7.8 138 916-1096 38-177 (354)
246 2bbw_A Adenylate kinase 4, AK4 99.2 4.5E-13 1.5E-17 145.8 -1.5 146 913-1071 26-197 (246)
247 3lda_A DNA repair protein RAD5 99.2 5.8E-12 2E-16 145.3 7.5 147 281-470 174-364 (400)
248 3auy_A DNA double-strand break 99.2 1.7E-11 5.9E-16 141.5 11.3 74 1023-1106 279-359 (371)
249 3e70_C DPA, signal recognition 99.2 6.5E-12 2.2E-16 141.2 6.7 142 281-453 125-278 (328)
250 2kjq_A DNAA-related protein; s 99.2 1.5E-11 5.2E-16 122.3 8.0 91 274-453 30-124 (149)
251 3e70_C DPA, signal recognition 99.2 7.4E-13 2.5E-17 149.0 -1.9 166 910-1111 125-307 (328)
252 1sxj_E Activator 1 40 kDa subu 99.2 6.8E-12 2.3E-16 144.3 6.1 139 286-457 37-177 (354)
253 3lda_A DNA repair protein RAD5 99.2 2.2E-11 7.4E-16 140.5 9.8 149 910-1109 174-364 (400)
254 2kjq_A DNAA-related protein; s 99.2 2.6E-11 8.8E-16 120.6 7.3 44 903-952 30-75 (149)
255 2x8a_A Nuclear valosin-contain 99.2 3.1E-13 1E-17 149.1 -7.8 144 902-1068 34-191 (274)
256 2x8a_A Nuclear valosin-contain 99.1 1.7E-13 5.7E-18 151.2 -10.8 143 273-438 34-190 (274)
257 3ec2_A DNA replication protein 99.1 1.1E-11 3.9E-16 127.8 2.6 112 279-456 32-145 (180)
258 2yv5_A YJEQ protein; hydrolase 99.1 6.3E-12 2.2E-16 140.6 -0.3 114 910-1037 161-300 (302)
259 1sq5_A Pantothenate kinase; P- 99.1 1.1E-12 3.6E-17 147.5 -7.1 140 254-428 35-199 (308)
260 2yv5_A YJEQ protein; hydrolase 99.1 7.9E-12 2.7E-16 139.8 -1.2 115 280-408 160-300 (302)
261 1udx_A The GTP-binding protein 99.1 6.2E-11 2.1E-15 137.3 5.2 135 904-1062 147-286 (416)
262 3lnc_A Guanylate kinase, GMP k 99.0 4.1E-13 1.4E-17 144.6 -13.0 147 902-1070 15-176 (231)
263 3ec2_A DNA replication protein 99.0 2E-10 6.8E-15 118.3 6.5 113 908-1095 32-145 (180)
264 1udx_A The GTP-binding protein 99.0 6.7E-11 2.3E-15 137.0 2.4 154 275-452 147-306 (416)
265 3lnc_A Guanylate kinase, GMP k 99.0 7.3E-13 2.5E-17 142.7 -14.4 38 273-310 15-53 (231)
266 1cke_A CK, MSSA, protein (cyti 99.0 1.6E-11 5.4E-16 131.7 -4.6 128 914-1053 5-151 (227)
267 1sq5_A Pantothenate kinase; P- 99.0 2.9E-11 1E-15 135.8 -2.7 140 883-1057 35-199 (308)
268 1u0l_A Probable GTPase ENGC; p 98.9 1.6E-10 5.4E-15 129.2 2.5 102 909-1011 164-289 (301)
269 1u0l_A Probable GTPase ENGC; p 98.9 1.7E-10 6E-15 128.9 1.8 94 280-374 164-280 (301)
270 4e22_A Cytidylate kinase; P-lo 98.9 1.3E-10 4.4E-15 126.7 0.3 98 902-1009 18-133 (252)
271 1vma_A Cell division protein F 98.9 5.8E-10 2E-14 124.1 5.5 98 907-1053 97-197 (306)
272 3euj_A Chromosome partition pr 98.9 6.5E-10 2.2E-14 130.2 4.7 65 887-957 8-72 (483)
273 1ls1_A Signal recognition part 98.9 1.8E-09 6E-14 120.1 8.0 132 886-1070 77-209 (295)
274 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 1E-11 3.4E-16 142.4 -10.5 171 910-1117 16-209 (392)
275 3euj_A Chromosome partition pr 98.9 5.8E-10 2E-14 130.6 3.8 54 273-327 18-71 (483)
276 2px0_A Flagellar biosynthesis 98.8 3.1E-09 1.1E-13 118.0 7.7 138 283-473 103-246 (296)
277 1ls1_A Signal recognition part 98.8 7E-09 2.4E-13 115.3 10.3 132 257-441 77-209 (295)
278 1t9h_A YLOQ, probable GTPase E 98.8 2.5E-10 8.5E-15 126.6 -1.7 95 910-1006 169-288 (307)
279 1vma_A Cell division protein F 98.8 1.8E-09 6E-14 120.2 4.8 111 278-440 97-210 (306)
280 2px0_A Flagellar biosynthesis 98.8 4.6E-09 1.6E-13 116.6 7.5 141 912-1112 103-246 (296)
281 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 6.7E-12 2.3E-16 143.9 -16.1 170 281-478 16-209 (392)
282 1iy2_A ATP-dependent metallopr 98.8 2.1E-11 7.1E-16 135.2 -12.1 132 258-416 51-190 (278)
283 3tr0_A Guanylate kinase, GMP k 98.8 1E-09 3.6E-14 115.4 1.2 72 279-354 1-73 (205)
284 1t9h_A YLOQ, probable GTPase E 98.8 5.3E-10 1.8E-14 123.9 -1.5 73 280-354 168-248 (307)
285 2dr3_A UPF0273 protein PH0284; 98.8 3E-09 1E-13 115.3 4.3 167 273-468 10-196 (247)
286 1oix_A RAS-related protein RAB 98.7 3.7E-10 1.3E-14 117.6 -3.2 142 916-1069 31-188 (191)
287 3a00_A Guanylate kinase, GMP k 98.7 1.4E-09 4.8E-14 112.7 1.1 128 914-1050 1-169 (186)
288 1cke_A CK, MSSA, protein (cyti 98.7 1.3E-10 4.6E-15 124.4 -7.1 127 285-423 5-150 (227)
289 1ixz_A ATP-dependent metallopr 98.7 2.6E-11 9E-16 132.5 -12.9 138 257-423 26-171 (254)
290 1in4_A RUVB, holliday junction 98.7 3.8E-11 1.3E-15 136.7 -12.5 159 261-442 23-193 (334)
291 1in4_A RUVB, holliday junction 98.7 4.1E-11 1.4E-15 136.4 -12.3 151 888-1070 21-192 (334)
292 1iy2_A ATP-dependent metallopr 98.7 1E-10 3.5E-15 129.6 -9.1 138 887-1053 51-196 (278)
293 3ney_A 55 kDa erythrocyte memb 98.7 2.2E-09 7.4E-14 110.9 1.3 82 910-1000 15-109 (197)
294 4e22_A Cytidylate kinase; P-lo 98.7 1.1E-09 3.7E-14 119.3 -1.3 78 274-354 19-114 (252)
295 2ius_A DNA translocase FTSK; n 98.7 7.8E-10 2.7E-14 130.4 -2.9 165 906-1094 159-343 (512)
296 3tr0_A Guanylate kinase, GMP k 98.7 4E-09 1.4E-13 110.9 2.8 72 908-983 1-73 (205)
297 3a00_A Guanylate kinase, GMP k 98.7 1.4E-09 4.8E-14 112.6 -0.7 127 285-421 1-169 (186)
298 2dy1_A Elongation factor G; tr 98.7 1.4E-08 4.7E-13 125.6 7.3 97 908-1006 3-103 (665)
299 2zr9_A Protein RECA, recombina 98.7 3.6E-08 1.2E-12 112.0 10.1 150 274-476 48-237 (349)
300 2dr3_A UPF0273 protein PH0284; 98.7 1.5E-08 5.2E-13 109.6 5.9 169 902-1107 10-196 (247)
301 1qhl_A Protein (cell division 98.6 7.9E-10 2.7E-14 117.3 -4.4 75 256-341 9-91 (227)
302 1ixz_A ATP-dependent metallopr 98.6 1.8E-10 6.2E-15 125.8 -9.8 140 886-1054 26-173 (254)
303 1oix_A RAS-related protein RAB 98.6 2.6E-09 9E-14 111.0 -1.0 141 287-440 31-188 (191)
304 2ius_A DNA translocase FTSK; n 98.6 2.4E-09 8.4E-14 126.3 -1.5 159 277-455 159-343 (512)
305 2zr9_A Protein RECA, recombina 98.6 9.7E-08 3.3E-12 108.5 11.2 148 910-1115 57-237 (349)
306 2r6a_A DNAB helicase, replicat 98.6 4E-08 1.4E-12 116.4 7.7 177 273-471 191-401 (454)
307 1kgd_A CASK, peripheral plasma 98.6 1.1E-08 3.8E-13 105.2 2.3 81 913-1000 4-95 (180)
308 3k1j_A LON protease, ATP-depen 98.6 2.4E-09 8.2E-14 131.6 -3.7 157 272-440 47-227 (604)
309 1qhl_A Protein (cell division 98.6 1.8E-09 6.1E-14 114.6 -5.1 75 885-970 9-91 (227)
310 1svm_A Large T antigen; AAA+ f 98.5 1.7E-09 5.9E-14 123.5 -6.0 137 902-1053 157-312 (377)
311 3ney_A 55 kDa erythrocyte memb 98.5 1.1E-08 3.7E-13 105.7 -0.1 73 280-358 14-99 (197)
312 2r6a_A DNAB helicase, replicat 98.5 4.5E-08 1.5E-12 115.9 4.4 172 902-1110 191-401 (454)
313 3k1j_A LON protease, ATP-depen 98.5 7.4E-09 2.5E-13 127.2 -3.0 157 901-1069 47-227 (604)
314 2qt1_A Nicotinamide riboside k 98.5 1.9E-08 6.4E-13 106.0 -0.1 54 906-985 13-66 (207)
315 1svm_A Large T antigen; AAA+ f 98.4 2.8E-09 9.7E-14 121.7 -7.5 137 273-424 157-312 (377)
316 2dy1_A Elongation factor G; tr 98.4 7.5E-08 2.6E-12 119.0 4.6 133 279-457 3-139 (665)
317 1kgd_A CASK, peripheral plasma 98.4 2.1E-08 7.3E-13 103.0 -2.0 71 283-357 3-84 (180)
318 2f9l_A RAB11B, member RAS onco 98.4 8.7E-08 3E-12 100.1 2.0 138 916-1070 7-165 (199)
319 2ce7_A Cell division protein F 98.4 7.8E-07 2.7E-11 104.7 10.0 113 274-457 40-167 (476)
320 3kta_A Chromosome segregation 98.3 1.5E-07 5.1E-12 96.8 2.1 99 905-1004 18-136 (182)
321 2f9l_A RAB11B, member RAS onco 98.3 2.7E-07 9.1E-12 96.3 3.7 35 404-440 130-164 (199)
322 2j41_A Guanylate kinase; GMP, 98.3 2.4E-07 8.1E-12 97.3 2.6 85 909-1000 1-96 (207)
323 3nwj_A ATSK2; P loop, shikimat 98.2 1.1E-07 3.9E-12 102.4 -0.7 52 885-938 17-72 (250)
324 3nwj_A ATSK2; P loop, shikimat 98.2 1.3E-07 4.3E-12 102.1 -0.5 52 256-309 17-72 (250)
325 2qt1_A Nicotinamide riboside k 98.2 2.4E-07 8.1E-12 97.5 1.4 51 280-356 16-66 (207)
326 4eun_A Thermoresistant glucoki 98.2 2E-07 6.9E-12 97.5 0.8 60 279-343 23-82 (200)
327 2dhr_A FTSH; AAA+ protein, hex 98.2 5.1E-08 1.8E-12 115.4 -4.4 127 273-425 54-188 (499)
328 3uie_A Adenylyl-sulfate kinase 98.2 8.5E-08 2.9E-12 100.4 -2.4 60 890-953 4-65 (200)
329 3t34_A Dynamin-related protein 98.2 4.9E-07 1.7E-11 103.8 3.6 45 902-949 25-71 (360)
330 4eun_A Thermoresistant glucoki 98.2 4E-07 1.4E-11 95.2 2.5 61 908-974 23-84 (200)
331 3t34_A Dynamin-related protein 98.2 6.1E-07 2.1E-11 103.0 4.0 43 273-318 25-69 (360)
332 2qtf_A Protein HFLX, GTP-bindi 98.2 1.1E-06 3.6E-11 100.5 5.9 143 287-441 181-351 (364)
333 2ce7_A Cell division protein F 98.2 3.5E-06 1.2E-10 99.1 10.4 119 902-1096 39-167 (476)
334 3uie_A Adenylyl-sulfate kinase 98.2 8.7E-08 3E-12 100.3 -3.3 60 261-324 4-65 (200)
335 2qtf_A Protein HFLX, GTP-bindi 98.2 1.1E-06 3.8E-11 100.4 5.1 138 916-1071 181-352 (364)
336 3tau_A Guanylate kinase, GMP k 98.1 4.4E-07 1.5E-11 95.5 1.2 82 912-1000 6-98 (208)
337 3cr8_A Sulfate adenylyltranfer 98.1 2.3E-07 7.9E-12 111.2 -1.2 89 909-1002 364-468 (552)
338 1zu4_A FTSY; GTPase, signal re 98.1 6.6E-07 2.3E-11 100.2 2.6 69 903-971 94-172 (320)
339 1zu4_A FTSY; GTPase, signal re 98.1 7.4E-07 2.5E-11 99.8 2.8 69 274-342 94-172 (320)
340 3vaa_A Shikimate kinase, SK; s 98.1 8.5E-07 2.9E-11 92.6 3.1 45 894-938 5-49 (199)
341 2j41_A Guanylate kinase; GMP, 98.1 7.8E-07 2.7E-11 93.3 2.7 61 280-343 1-61 (207)
342 2dhr_A FTSH; AAA+ protein, hex 98.1 1.7E-07 5.9E-12 110.9 -2.6 139 887-1054 42-188 (499)
343 3vaa_A Shikimate kinase, SK; s 98.1 1E-06 3.5E-11 92.0 3.3 45 265-309 5-49 (199)
344 3hr8_A Protein RECA; alpha and 98.1 2E-06 6.9E-11 97.2 5.1 66 274-342 48-116 (356)
345 2xau_A PRE-mRNA-splicing facto 98.0 4.9E-06 1.7E-10 104.5 8.3 67 393-459 188-257 (773)
346 3kta_A Chromosome segregation 98.0 1.1E-06 3.9E-11 90.1 2.1 67 276-343 18-90 (182)
347 2vp4_A Deoxynucleoside kinase; 98.0 4E-07 1.4E-11 97.4 -1.8 64 908-975 14-87 (230)
348 3hr8_A Protein RECA; alpha and 98.0 3.8E-06 1.3E-10 94.9 5.8 61 910-973 57-118 (356)
349 3ice_A Transcription terminati 98.0 1.2E-06 3.9E-11 98.1 0.8 56 882-939 130-199 (422)
350 2e87_A Hypothetical protein PH 97.9 1.2E-05 4E-10 92.0 8.4 61 393-454 229-292 (357)
351 1jjv_A Dephospho-COA kinase; P 97.9 2.8E-06 9.7E-11 89.0 2.3 69 396-467 60-131 (206)
352 2xau_A PRE-mRNA-splicing facto 97.9 1.3E-05 4.4E-10 100.8 8.6 66 1024-1098 190-257 (773)
353 4a1f_A DNAB helicase, replicat 97.9 1.5E-05 5.2E-10 89.3 7.2 127 274-452 35-164 (338)
354 2e87_A Hypothetical protein PH 97.8 2.1E-05 7.1E-10 90.0 8.3 123 915-1094 168-293 (357)
355 1jjv_A Dephospho-COA kinase; P 97.8 8.7E-06 3E-10 85.3 4.7 126 916-1107 4-132 (206)
356 3tau_A Guanylate kinase, GMP k 97.8 3.3E-06 1.1E-10 88.7 1.3 29 283-311 6-34 (208)
357 3ice_A Transcription terminati 97.8 2.9E-06 9.8E-11 95.0 0.2 56 253-310 130-199 (422)
358 2z43_A DNA repair and recombin 97.8 1.3E-05 4.4E-10 90.4 5.3 29 281-309 103-131 (324)
359 1knq_A Gluconate kinase; ALFA/ 97.7 1.7E-05 5.7E-10 80.7 3.6 54 912-971 6-60 (175)
360 3cr8_A Sulfate adenylyltranfer 97.7 2.4E-06 8.2E-11 102.4 -3.1 44 280-323 364-409 (552)
361 1rz3_A Hypothetical protein rb 97.7 1.2E-05 4.3E-10 83.8 2.6 47 281-327 18-64 (201)
362 2ffh_A Protein (FFH); SRP54, s 97.7 5.8E-05 2E-09 87.3 8.2 144 886-1058 77-227 (425)
363 1rz3_A Hypothetical protein rb 97.7 1.4E-05 4.7E-10 83.5 2.7 48 910-957 18-65 (201)
364 2ffh_A Protein (FFH); SRP54, s 97.7 0.00011 3.7E-09 85.0 10.4 157 260-452 80-246 (425)
365 2z43_A DNA repair and recombin 97.7 3.6E-05 1.2E-09 86.7 6.1 41 910-950 103-150 (324)
366 3kl4_A SRP54, signal recogniti 97.6 6.5E-05 2.2E-09 87.0 7.6 38 284-321 96-133 (433)
367 3tqc_A Pantothenate kinase; bi 97.6 1.6E-05 5.6E-10 88.5 1.7 44 273-316 74-125 (321)
368 2vp4_A Deoxynucleoside kinase; 97.6 2.4E-05 8.4E-10 83.4 2.9 64 278-345 13-86 (230)
369 3tqc_A Pantothenate kinase; bi 97.5 1.8E-05 6.2E-10 88.2 1.5 46 902-947 74-127 (321)
370 1fnn_A CDC6P, cell division co 97.5 0.00024 8.3E-09 81.9 11.1 44 412-456 124-171 (389)
371 1knq_A Gluconate kinase; ALFA/ 97.5 4.3E-05 1.5E-09 77.6 3.2 38 283-324 6-43 (175)
372 4a1f_A DNAB helicase, replicat 97.5 0.00018 6E-09 80.7 8.4 104 902-1056 34-141 (338)
373 3kl4_A SRP54, signal recogniti 97.5 0.0001 3.5E-09 85.3 6.3 41 913-953 96-136 (433)
374 2z4s_A Chromosomal replication 97.4 4.8E-05 1.7E-09 89.3 3.5 68 1042-1118 194-265 (440)
375 2pez_A Bifunctional 3'-phospho 97.4 2.2E-05 7.7E-10 80.1 0.3 41 912-953 3-45 (179)
376 1uf9_A TT1252 protein; P-loop, 97.4 3E-06 1E-10 88.5 -6.6 32 915-951 9-40 (203)
377 1v5w_A DMC1, meiotic recombina 97.4 0.00011 3.6E-09 83.5 5.7 28 281-308 118-145 (343)
378 1fnn_A CDC6P, cell division co 97.4 0.00037 1.3E-08 80.3 10.0 29 913-941 41-71 (389)
379 1v5w_A DMC1, meiotic recombina 97.4 0.00011 3.9E-09 83.2 5.2 42 910-951 118-166 (343)
380 3bh0_A DNAB-like replicative h 97.3 0.00013 4.5E-09 81.7 5.1 129 273-452 56-189 (315)
381 3b9p_A CG5977-PA, isoform A; A 97.3 0.00091 3.1E-08 74.1 11.9 70 397-466 97-186 (297)
382 2z4s_A Chromosomal replication 97.3 0.00032 1.1E-08 82.3 8.3 43 412-454 193-237 (440)
383 3b9p_A CG5977-PA, isoform A; A 97.3 0.00085 2.9E-08 74.3 11.1 76 1026-1106 97-187 (297)
384 3m6a_A ATP-dependent protease 97.3 6.3E-05 2.2E-09 90.7 1.6 48 273-321 97-144 (543)
385 1sxj_C Activator 1 40 kDa subu 97.3 9.5E-05 3.2E-09 83.9 2.9 42 902-943 32-75 (340)
386 1ypw_A Transitional endoplasmi 97.2 4.4E-05 1.5E-09 96.4 0.1 47 906-954 503-549 (806)
387 1sxj_C Activator 1 40 kDa subu 97.2 5.9E-05 2E-09 85.6 1.1 42 273-314 32-75 (340)
388 3lxx_A GTPase IMAP family memb 97.2 0.0014 4.8E-08 70.0 11.6 29 287-315 31-59 (239)
389 2qby_A CDC6 homolog 1, cell di 97.2 0.00031 1.1E-08 80.7 6.7 30 912-941 43-72 (386)
390 1ypw_A Transitional endoplasmi 97.2 0.00014 4.7E-09 91.9 3.8 32 909-940 233-264 (806)
391 1mky_A Probable GTP-binding pr 97.2 0.00014 4.7E-09 85.6 3.4 61 915-975 181-253 (439)
392 1f6b_A SAR1; gtpases, N-termin 97.2 9.6E-05 3.3E-09 76.7 1.9 58 892-952 6-71 (198)
393 2p67_A LAO/AO transport system 97.2 6.3E-05 2.2E-09 85.3 0.5 53 902-954 44-96 (341)
394 1ega_A Protein (GTP-binding pr 97.2 0.0001 3.5E-09 82.0 2.1 143 284-457 7-162 (301)
395 2qby_A CDC6 homolog 1, cell di 97.2 0.00026 8.9E-09 81.4 5.5 30 283-312 43-72 (386)
396 3llm_A ATP-dependent RNA helic 97.2 0.00051 1.8E-08 73.3 7.3 128 911-1070 73-205 (235)
397 3m6a_A ATP-dependent protease 97.2 9.1E-05 3.1E-09 89.4 1.5 80 888-971 86-165 (543)
398 1ega_A Protein (GTP-binding pr 97.1 0.00051 1.7E-08 76.3 7.2 151 913-1098 7-164 (301)
399 2pez_A Bifunctional 3'-phospho 97.1 0.00011 3.9E-09 74.8 1.6 40 283-323 3-44 (179)
400 2p67_A LAO/AO transport system 97.1 7.6E-05 2.6E-09 84.6 0.1 49 273-321 44-92 (341)
401 1lv7_A FTSH; alpha/beta domain 97.1 0.0022 7.4E-08 69.4 11.6 43 275-321 37-79 (257)
402 2www_A Methylmalonic aciduria 97.1 0.00015 5.3E-09 82.2 2.5 44 912-955 72-115 (349)
403 1kag_A SKI, shikimate kinase I 97.1 0.00024 8.3E-09 71.7 3.4 28 284-311 3-30 (173)
404 2qor_A Guanylate kinase; phosp 97.1 0.00016 5.4E-09 75.5 1.9 69 910-981 8-87 (204)
405 4eaq_A DTMP kinase, thymidylat 97.0 0.00025 8.7E-09 75.4 3.3 43 275-318 13-58 (229)
406 1mky_A Probable GTP-binding pr 97.0 0.0003 1E-08 82.7 4.2 59 287-345 182-252 (439)
407 4eaq_A DTMP kinase, thymidylat 97.0 0.00033 1.1E-08 74.5 3.8 46 904-950 13-61 (229)
408 1m7g_A Adenylylsulfate kinase; 97.0 0.00015 5.2E-09 76.1 1.0 44 909-952 20-65 (211)
409 1m7g_A Adenylylsulfate kinase; 97.0 0.00015 5E-09 76.2 0.8 42 280-321 20-63 (211)
410 1kag_A SKI, shikimate kinase I 97.0 0.00029 9.8E-09 71.2 2.9 33 913-949 3-35 (173)
411 1m2o_B GTP-binding protein SAR 97.0 0.00041 1.4E-08 71.3 4.1 48 903-951 13-68 (190)
412 3llm_A ATP-dependent RNA helic 97.0 0.0018 6.3E-08 68.9 9.3 127 282-444 73-208 (235)
413 3r20_A Cytidylate kinase; stru 96.9 0.00012 4.1E-09 77.6 -0.4 70 914-983 9-96 (233)
414 3lxx_A GTPase IMAP family memb 96.9 0.0024 8.2E-08 68.2 9.8 28 916-943 31-58 (239)
415 2www_A Methylmalonic aciduria 96.9 0.00025 8.6E-09 80.5 2.2 40 284-323 73-112 (349)
416 2gj8_A MNME, tRNA modification 96.9 0.00055 1.9E-08 69.1 4.2 27 912-938 2-28 (172)
417 1f6b_A SAR1; gtpases, N-termin 96.9 0.00025 8.4E-09 73.6 1.4 42 263-307 6-47 (198)
418 1l8q_A Chromosomal replication 96.9 0.0013 4.4E-08 73.9 7.4 29 284-312 36-64 (324)
419 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00059 2E-08 67.2 4.0 31 276-307 15-45 (149)
420 2qor_A Guanylate kinase; phosp 96.8 0.00026 8.8E-09 73.9 1.4 29 282-310 9-37 (204)
421 3r20_A Cytidylate kinase; stru 96.8 0.00012 4E-09 77.7 -1.5 70 285-354 9-96 (233)
422 1u94_A RECA protein, recombina 96.8 0.0046 1.6E-07 70.0 11.5 37 273-310 49-88 (356)
423 2w58_A DNAI, primosome compone 96.8 0.0012 4.1E-08 68.5 6.2 27 286-312 55-81 (202)
424 1l8q_A Chromosomal replication 96.8 0.0015 5E-08 73.4 7.1 27 914-940 37-63 (324)
425 3cf0_A Transitional endoplasmi 96.8 0.0028 9.6E-08 70.3 9.2 38 280-319 44-81 (301)
426 3h4m_A Proteasome-activating n 96.8 0.0034 1.2E-07 68.9 9.8 28 282-309 48-75 (285)
427 2jaq_A Deoxyguanosine kinase; 96.8 0.00013 4.4E-09 75.9 -1.8 69 916-984 2-86 (205)
428 3bh0_A DNAB-like replicative h 96.7 0.00083 2.9E-08 75.1 4.6 36 902-937 56-91 (315)
429 1m2o_B GTP-binding protein SAR 96.7 0.00095 3.2E-08 68.5 4.1 33 274-307 13-45 (190)
430 3bos_A Putative DNA replicatio 96.6 0.0011 3.6E-08 70.6 4.1 28 284-311 51-78 (242)
431 3h4m_A Proteasome-activating n 96.6 0.0059 2E-07 67.0 10.3 28 911-938 48-75 (285)
432 1u94_A RECA protein, recombina 96.6 0.01 3.4E-07 67.2 12.3 47 902-949 49-99 (356)
433 4fcw_A Chaperone protein CLPB; 96.6 0.0048 1.7E-07 68.5 9.4 31 286-316 48-78 (311)
434 1j8m_F SRP54, signal recogniti 96.6 0.0005 1.7E-08 76.0 1.2 62 888-955 77-139 (297)
435 2gj8_A MNME, tRNA modification 96.6 0.0013 4.3E-08 66.4 3.9 27 283-309 2-28 (172)
436 1y63_A LMAJ004144AAA protein; 96.5 0.0012 4.1E-08 67.5 3.4 32 277-308 2-33 (184)
437 1j8m_F SRP54, signal recogniti 96.5 0.00051 1.7E-08 75.9 0.5 47 276-323 89-136 (297)
438 1f2t_A RAD50 ABC-ATPase; DNA d 96.5 0.0015 5.1E-08 64.3 3.8 31 905-936 15-45 (149)
439 1sxj_D Activator 1 41 kDa subu 96.5 0.00066 2.2E-08 77.1 1.4 43 413-456 133-175 (353)
440 2ohf_A Protein OLA1, GTP-bindi 96.4 0.0013 4.6E-08 74.9 3.8 41 910-950 18-69 (396)
441 3cf0_A Transitional endoplasmi 96.4 0.0068 2.3E-07 67.1 9.5 39 908-948 43-81 (301)
442 3bos_A Putative DNA replicatio 96.4 0.002 6.7E-08 68.5 4.7 28 913-940 51-78 (242)
443 2yvu_A Probable adenylyl-sulfa 96.4 0.0011 3.6E-08 67.9 2.3 37 281-317 9-45 (186)
444 2qag_A Septin-2, protein NEDD5 96.4 0.00043 1.5E-08 79.0 -0.9 58 882-948 14-71 (361)
445 4dcu_A GTP-binding protein ENG 96.4 0.0032 1.1E-07 74.3 6.5 58 1027-1096 87-144 (456)
446 2w58_A DNAI, primosome compone 96.4 0.0027 9.2E-08 65.8 5.2 27 915-941 55-81 (202)
447 1sxj_D Activator 1 41 kDa subu 96.4 0.0011 3.9E-08 75.2 2.5 44 1042-1096 133-176 (353)
448 1y63_A LMAJ004144AAA protein; 96.4 0.0015 5E-08 66.8 3.1 32 906-937 2-33 (184)
449 3n70_A Transport activator; si 96.3 0.009 3.1E-07 58.2 8.5 30 283-312 22-51 (145)
450 2wji_A Ferrous iron transport 96.3 0.003 1E-07 63.0 4.7 24 915-938 4-27 (165)
451 2ohf_A Protein OLA1, GTP-bindi 96.2 0.0023 8E-08 72.9 3.9 40 281-320 18-68 (396)
452 1np6_A Molybdopterin-guanine d 96.2 0.0023 7.9E-08 64.6 3.3 38 285-322 6-46 (174)
453 2wjg_A FEOB, ferrous iron tran 96.1 0.0025 8.7E-08 64.8 3.5 23 915-937 8-30 (188)
454 1np6_A Molybdopterin-guanine d 96.1 0.0026 8.9E-08 64.2 3.4 37 915-951 7-46 (174)
455 2yvu_A Probable adenylyl-sulfa 96.1 0.0018 6.2E-08 66.2 2.3 40 910-949 9-49 (186)
456 1njg_A DNA polymerase III subu 96.1 0.0063 2.2E-07 64.3 6.7 45 1041-1096 125-169 (250)
457 3qks_A DNA double-strand break 96.1 0.0031 1.1E-07 65.5 4.0 31 276-307 15-45 (203)
458 2q6t_A DNAB replication FORK h 96.1 0.013 4.5E-07 68.6 9.8 106 273-424 188-293 (444)
459 2p5t_B PEZT; postsegregational 96.1 0.002 6.8E-08 69.6 2.5 41 281-323 28-68 (253)
460 2p5t_B PEZT; postsegregational 96.1 0.002 6.9E-08 69.5 2.4 42 910-953 28-69 (253)
461 3t61_A Gluconokinase; PSI-biol 96.1 0.002 7E-08 66.8 2.4 32 285-320 18-49 (202)
462 4dcu_A GTP-binding protein ENG 96.0 0.0059 2E-07 71.9 6.5 56 398-455 87-142 (456)
463 1njg_A DNA polymerase III subu 96.0 0.01 3.4E-07 62.7 7.8 45 412-457 125-169 (250)
464 2qag_A Septin-2, protein NEDD5 96.0 0.00056 1.9E-08 78.0 -2.3 57 255-320 16-72 (361)
465 4fcw_A Chaperone protein CLPB; 96.0 0.018 6.3E-07 63.8 10.2 32 914-945 47-78 (311)
466 3t61_A Gluconokinase; PSI-biol 96.0 0.0021 7.2E-08 66.6 2.3 35 914-952 18-52 (202)
467 2i1q_A DNA repair and recombin 96.0 0.0033 1.1E-07 70.5 3.9 27 910-936 94-120 (322)
468 2wji_A Ferrous iron transport 96.0 0.0049 1.7E-07 61.4 4.7 24 287-310 5-28 (165)
469 3n70_A Transport activator; si 96.0 0.021 7.3E-07 55.5 9.1 28 912-939 22-49 (145)
470 1ex7_A Guanylate kinase; subst 96.0 0.0031 1.1E-07 64.3 3.1 22 288-309 4-25 (186)
471 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.037 1.3E-06 59.5 11.9 25 285-309 39-63 (262)
472 1ex7_A Guanylate kinase; subst 95.9 0.0036 1.2E-07 63.8 3.3 75 917-1000 4-91 (186)
473 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0015 5E-08 73.1 0.3 38 273-310 10-49 (359)
474 3d8b_A Fidgetin-like protein 1 95.9 0.027 9.3E-07 63.9 10.8 27 283-309 115-141 (357)
475 3lxw_A GTPase IMAP family memb 95.9 0.01 3.5E-07 63.6 6.9 123 287-456 23-151 (247)
476 1lv7_A FTSH; alpha/beta domain 95.9 0.0021 7E-08 69.5 1.3 47 903-953 36-82 (257)
477 2wjg_A FEOB, ferrous iron tran 95.8 0.0042 1.4E-07 63.2 3.3 22 287-308 9-30 (188)
478 2if2_A Dephospho-COA kinase; a 95.8 0.0041 1.4E-07 64.4 3.1 21 287-307 3-23 (204)
479 2vhj_A Ntpase P4, P4; non- hyd 95.7 0.015 5E-07 64.0 7.4 29 280-308 118-146 (331)
480 2zej_A Dardarin, leucine-rich 95.7 0.0051 1.8E-07 62.5 3.3 25 916-940 4-28 (184)
481 2v1u_A Cell division control p 95.7 0.019 6.4E-07 65.7 8.5 29 283-311 42-70 (387)
482 2if2_A Dephospho-COA kinase; a 95.6 0.0054 1.8E-07 63.6 3.3 21 916-936 3-23 (204)
483 2zej_A Dardarin, leucine-rich 95.6 0.0054 1.9E-07 62.3 3.2 25 287-311 4-28 (184)
484 3uk6_A RUVB-like 2; hexameric 95.6 0.024 8.2E-07 64.5 9.0 41 912-952 68-108 (368)
485 1qhx_A CPT, protein (chloramph 95.5 0.0071 2.4E-07 61.0 3.8 27 284-310 2-28 (178)
486 2ga8_A Hypothetical 39.9 kDa p 95.5 0.002 7E-08 71.9 -0.4 37 902-938 10-48 (359)
487 2b8t_A Thymidine kinase; deoxy 95.5 0.012 4.2E-07 61.7 5.6 51 413-467 89-150 (223)
488 3syl_A Protein CBBX; photosynt 95.5 0.071 2.4E-06 58.9 12.2 26 285-310 67-92 (309)
489 1jal_A YCHF protein; nucleotid 95.5 0.0088 3E-07 67.5 4.7 36 914-949 2-48 (363)
490 1ko7_A HPR kinase/phosphatase; 95.5 0.0084 2.9E-07 66.0 4.4 46 903-949 134-183 (314)
491 2q6t_A DNAB replication FORK h 95.5 0.017 5.8E-07 67.7 7.3 130 902-1057 188-325 (444)
492 3cm0_A Adenylate kinase; ATP-b 95.5 0.0059 2E-07 62.1 3.0 27 283-309 2-28 (186)
493 1xp8_A RECA protein, recombina 95.4 0.085 2.9E-06 59.7 12.6 29 281-309 70-98 (366)
494 3ihw_A Centg3; RAS, centaurin, 95.4 0.01 3.5E-07 60.3 4.6 36 916-951 22-66 (184)
495 3qks_A DNA double-strand break 95.4 0.008 2.7E-07 62.4 3.8 30 905-935 15-44 (203)
496 2qz4_A Paraplegin; AAA+, SPG7, 95.4 0.098 3.4E-06 56.1 12.5 27 912-938 37-63 (262)
497 1xwi_A SKD1 protein; VPS4B, AA 95.3 0.096 3.3E-06 58.4 12.6 27 283-309 43-69 (322)
498 3dm5_A SRP54, signal recogniti 95.3 0.085 2.9E-06 60.9 12.3 29 284-312 99-127 (443)
499 1xp8_A RECA protein, recombina 95.3 0.073 2.5E-06 60.3 11.6 29 910-938 70-98 (366)
500 4ag6_A VIRB4 ATPase, type IV s 95.3 0.0072 2.5E-07 69.7 3.3 36 284-319 34-69 (392)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7e-186 Score=1827.18 Aligned_cols=1121 Identities=35% Similarity=0.593 Sum_probs=968.8
Q ss_pred HHHHHHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 4 VKLILSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAV 74 (1139)
Q Consensus 4 ~~~~~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 74 (1139)
..+.+||.++|+|+..+ +++|++|||++ ++|++++|+++|++.+++++...+..++..++++++++++++
T Consensus 154 ~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~-~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~ 232 (1321)
T 4f4c_A 154 QITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTN-HSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAF 232 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHT-CCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999887 88999999997 899999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Q 048639 75 ICCWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIIS 154 (1139)
Q Consensus 75 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 154 (1139)
+++|.+++++++++|+++++..++.++.++..++.++..+++++.++|.++|+++||+|++|+.+.++|.+..++..+..
T Consensus 233 ~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 312 (1321)
T 4f4c_A 233 THSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAG 312 (1321)
T ss_dssp HHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 155 RGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQV 234 (1139)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~ 234 (1139)
.+.....++..++..++.++.+++++|+|++++.+|.+++|.+++++.++.....|+..+++.+..++++.++++|++++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~ 392 (1321)
T 4f4c_A 313 VLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEV 392 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999898999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCccCC-CCccccCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCc
Q 048639 235 IQRKPRISYSS-KGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN 313 (1139)
Q Consensus 235 l~~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~ 313 (1139)
++.+|+..... ....+.+.++.|+|+||+|+||+++++++|+|+||+|++||++|||||||||||||+++|+|+|+|++
T Consensus 393 l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~ 472 (1321)
T 4f4c_A 393 LDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLK 472 (1321)
T ss_dssp TTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSE
T ss_pred HcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccccc
Confidence 98876653221 22233345678999999999997777899999999999999999999999999999999999999999
Q ss_pred cEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccC
Q 048639 314 GDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRG 393 (1139)
Q Consensus 314 G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g 393 (1139)
|+|.+||+|+++++.+++|++||||+|+||||++||+|||+||+|+++++++++||+.++++++++.||+||+|.+||+|
T Consensus 473 G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G 552 (1321)
T 4f4c_A 473 GKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRG 552 (1321)
T ss_dssp EEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSS
T ss_pred CcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEE
Q 048639 394 VQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTE 473 (1139)
Q Consensus 394 ~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 473 (1139)
.+||||||||||||||+|+||+||||||||||||+++++.++++|.++.+|+|+|+||||+++++.||+|+||++|+|++
T Consensus 553 ~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive 632 (1321)
T 4f4c_A 553 TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVE 632 (1321)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEE
T ss_pred CCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhhhhccchHHHHHHhhccCCCCCC---------cCccccc-ccccc-cchhhhhhhcccC--------chhhh--h
Q 048639 474 TGTHHSLLQTSDFYNRLFTMQNLRPIDD---------SRTKAST-VESTS-TEQQISVVEQLEE--------PEESK--R 532 (1139)
Q Consensus 474 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~~~~-~~~~~~~~~~~~~--------~~~~~--~ 532 (1139)
+|+|+||+++++.|++++..|...+..+ +...... .+.+. ............. ....+ .
T Consensus 633 ~Gth~eL~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (1321)
T 4f4c_A 633 VGDHRALMAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPVID 712 (1321)
T ss_dssp EECHHHHHTTTCHHHHHHHHHHHHHHHHHHHCC-----------------------------------------------
T ss_pred cCCHHHHHHhhhHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhccccccccCCcchh
Confidence 9999999999999999997664211100 0000000 00000 0000000000000 00000 0
Q ss_pred hccccc---------chhhhcccccchhhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCc--hhhh
Q 048639 533 ELSAST---------GQEEVKGKRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDP--QAKQ 601 (1139)
Q Consensus 533 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 601 (1139)
+.+... .+.+..+......+++ .++.++.++.++++++++.+.+...|.+.+++..++..+..+ ....
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1321)
T 4f4c_A 713 EKEERIGKDALSRLKQELEENNAQKTNLFEI-LYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLS 791 (1321)
T ss_dssp ---CCCCCCHHHHHHHTTTTSCCCCCCHHHH-HHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTT
T ss_pred HHHhhccchhHHHHHHHHHHcCCcceeHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh
Confidence 000000 0000111122233334 344567777888888888888899999999888888776642 2234
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHH
Q 048639 602 EVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIIS 681 (1139)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~ 681 (1139)
...+|+++|++++++..++.+++.+++.+.+.++..++|.++|++++++|++|||.+++|+|+++||+++|++.++..++
T Consensus 792 ~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~ 871 (1321)
T 4f4c_A 792 QGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAID 871 (1321)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHH
Confidence 55678889999999999999999999999999999999999999999999999998779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhh
Q 048639 682 DRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASF 761 (1139)
Q Consensus 682 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~ 761 (1139)
..+..++..++.++++++++++.+|.+++++++++|+++++.+++.+.......+..+...+...++.|+++|+++||+|
T Consensus 872 ~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~ 951 (1321)
T 4f4c_A 872 FRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQAL 951 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 99999999999999999999999999999999999998888888777766666666677778888999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH--HHHHHHHHHHHHHH
Q 048639 762 CHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDG--IRAYQIFSLTVPSI 839 (1139)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~ 839 (1139)
++++.+.++|.+..+...+...+.....+...++...+..+..++++|+|+.++..+..+.+.+ +.++..+.....++
T Consensus 952 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l 1031 (1321)
T 4f4c_A 952 AREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTL 1031 (1321)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSST
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888888888888888888888999999999998887665443 33333444444566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEE
Q 048639 840 TELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVAL 919 (1139)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaI 919 (1139)
..+...++.+..+..+++|++++++.+++.+.... ..+.++..|.|+|+||+|+||++++.|||+||||+|+|||+|||
T Consensus 1032 ~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~-~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaI 1110 (1321)
T 4f4c_A 1032 GFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSL-AGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLAL 1110 (1321)
T ss_dssp TGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCC-CSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccC-CCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEE
Confidence 77778889999999999999999998776543322 22334567899999999999988778899999999999999999
Q ss_pred EcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCC--CcCCHHHHHHH
Q 048639 920 VGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGN--EAASEAEIVEV 997 (1139)
Q Consensus 920 vG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~--~~~sd~ei~~a 997 (1139)
|||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||.+|. ++++|+|+|+|
T Consensus 1111 VG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~A 1190 (1321)
T 4f4c_A 1111 VGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEA 1190 (1321)
T ss_dssp ECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHH
T ss_pred ECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999883 47899999999
Q ss_pred HHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCc
Q 048639 998 SKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSC 1077 (1139)
Q Consensus 998 l~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~ 1077 (1139)
|+++++++||.++|+||||+|||+|.+|||||||||||||||+|+|||||||||||+||++||+.||++|++.+
T Consensus 1191 l~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~------ 1264 (1321)
T 4f4c_A 1191 ARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR------ 1264 (1321)
T ss_dssp HHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS------
T ss_pred HHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHHHhhcC
Q 048639 1078 GELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFSG 1138 (1139)
Q Consensus 1078 ~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~~~~ 1138 (1139)
+++| +|+||||++|+++||||+|||+|+|+|+|+|+||+++ +|.|++||+.|..++
T Consensus 1265 ---~~~T-vI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q~~e~ 1320 (1321)
T 4f4c_A 1265 ---EGRT-CIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQMTEK 1320 (1321)
T ss_dssp ---SSSE-EEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC-C--------------
T ss_pred ---CCCE-EEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHHHhcc
Confidence 5555 9999999999999999999999999999999999987 899999999998764
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=2.8e-163 Score=1607.79 Aligned_cols=1121 Identities=36% Similarity=0.629 Sum_probs=971.7
Q ss_pred HHHHHHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 4 VKLILSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAV 74 (1139)
Q Consensus 4 ~~~~~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 74 (1139)
....++|...++++..+ +++|++|||++ ++|++++|+++|++.+++.+...+..++..++++++++++++
T Consensus 126 ~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~-~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~ 204 (1284)
T 3g5u_A 126 YIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGF 204 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888877 88999999997 899999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Q 048639 75 ICCWEVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIIS 154 (1139)
Q Consensus 75 ~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 154 (1139)
+++|.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+..
T Consensus 205 ~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~ 284 (1284)
T 3g5u_A 205 TRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLG 284 (1284)
T ss_dssp HTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 155 RGEALIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQV 234 (1139)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~ 234 (1139)
.+.....++..++..++.++.+++++|+|++++..|.+++|.++++++++.....|+..+.+.+..++.+..+++|++++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 364 (1284)
T 3g5u_A 285 IKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKI 364 (1284)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888888888888888999999999999999999999999888888888889999999999999999999999999
Q ss_pred hccCCCCcc-CCCCccccCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCc
Q 048639 235 IQRKPRISY-SSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN 313 (1139)
Q Consensus 235 l~~~~~~~~-~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~ 313 (1139)
++.+|+... ...+..+.+..+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+++|++
T Consensus 365 l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~ 444 (1284)
T 3g5u_A 365 IDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444 (1284)
T ss_dssp TSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSE
T ss_pred HcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 987665422 1112222334578999999999986555679999999999999999999999999999999999999999
Q ss_pred cEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccC
Q 048639 314 GDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRG 393 (1139)
Q Consensus 314 G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g 393 (1139)
|+|.+||+|+++++++++|++||||||+|+||++||+|||.+|.++.++++++++++.+++++++.++|+|++|.+|++|
T Consensus 445 G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g 524 (1284)
T 3g5u_A 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERG 524 (1284)
T ss_dssp EEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSS
T ss_pred eEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEE
Q 048639 394 VQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTE 473 (1139)
Q Consensus 394 ~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~ 473 (1139)
.+|||||||||+|||||+++|+|||||||||+||+++++.+++.++...+|+|+|+||||++++..||+|++|++|+|++
T Consensus 525 ~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~ 604 (1284)
T 3g5u_A 525 AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVE 604 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCC
T ss_pred CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred ecChhhhhccchHHHHHHhhccCCCCCCcCcccccccccccc---h---hhhh-hhcccCchh--hhh--hcccccchhh
Q 048639 474 TGTHHSLLQTSDFYNRLFTMQNLRPIDDSRTKASTVESTSTE---Q---QISV-VEQLEEPEE--SKR--ELSASTGQEE 542 (1139)
Q Consensus 474 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~-~~~~~~~~~--~~~--~~~~~~~~~~ 542 (1139)
+|+|+|+++.++.|.+++..+..................... . .... ......... ... .......+..
T Consensus 605 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1284)
T 3g5u_A 605 QGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEAL 684 (1284)
T ss_dssp EECHHHHHHTTSHHHHHHHHTC---------------------------------------------------------C
T ss_pred ECCHHHHHhCCCHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccchhhhh
Confidence 999999999999999998765432211100000000000000 0 0000 000000000 000 0000000000
Q ss_pred hcccccchhhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCc----hhhhhHHHHHHHHHHHHHHHH
Q 048639 543 VKGKRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDP----QAKQEVGWYSLAFSLVGLFSL 618 (1139)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 618 (1139)
........++++ +.+.++.++.++++++++.+.+...|.+.+++..++..+... .......+|.+++++++++..
T Consensus 685 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 763 (1284)
T 3g5u_A 685 DEDVPPASFWRI-LKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISF 763 (1284)
T ss_dssp CCCCSCCCTTHH-HHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccchHHHHH-HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 111122234444 334455555666777777777888888888888777665432 123345567888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 619 FTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIAT 698 (1139)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~ 698 (1139)
++.+++.+++.+.+.++..++|.++|++++++|++|||.+.+++|++++|+++|++.++..++..+..++..++.+++++
T Consensus 764 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~ 843 (1284)
T 3g5u_A 764 ITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGI 843 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHH
Q 048639 699 IVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKT 778 (1139)
Q Consensus 699 ~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~ 778 (1139)
++++.++|.+++++++++|+++++.+++.++......+.++........+.|++.|+++||+|+.++.+.++|.+..+..
T Consensus 844 i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~ 923 (1284)
T 3g5u_A 844 IISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIP 923 (1284)
T ss_dssp HHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888887776777777777788899999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 779 KRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAP 858 (1139)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 858 (1139)
.+...+...+.+...++...+.++..++++|+|++++..+.++++.++.++.++.....++..+....+.+..+..+.+|
T Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~r 1003 (1284)
T 3g5u_A 924 YRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASH 1003 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888899999999999999999999999999888888888888888888888888899999999
Q ss_pred HHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 859 AFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 859 i~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
+.++++.+++.+.......+++...|.|+|+||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|
T Consensus 1004 i~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A 1004 IIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp HHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred HHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 99999887665432222223334568899999999998665567999999999999999999999999999999999999
Q ss_pred cCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCC--cCCHHHHHHHHHHcCchHHHhhCCCCccc
Q 048639 939 DPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNE--AASEAEIVEVSKKANIHDFISSLPDGYDT 1016 (1139)
Q Consensus 939 ~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~--~~sd~ei~~al~~~~l~~~i~~lp~gldt 1016 (1139)
+|++|+|.+||+|+++++++.+|++++||||||.+|++||+|||.++.+ ..++++++++++++++++++.++|+||||
T Consensus 1084 ~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt 1163 (1284)
T 3g5u_A 1084 DPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNT 1163 (1284)
T ss_dssp CCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGC
T ss_pred CCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCcccccc
Confidence 9999999999999999999999999999999999999999999999865 46899999999999999999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh
Q 048639 1017 VVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV 1096 (1139)
Q Consensus 1017 ~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti 1096 (1139)
++||+|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++.. .++| +|+||||++++
T Consensus 1164 ~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~---------~~~t-vi~isH~l~~i 1233 (1284)
T 3g5u_A 1164 RVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR---------EGRT-CIVIAHRLSTI 1233 (1284)
T ss_dssp BCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS---------SSSC-EEEECSCTTGG
T ss_pred ccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC---------CCCE-EEEEecCHHHH
Confidence 9999999999999999999999999999999999999999999999999999765 4444 99999999999
Q ss_pred hcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHHHhhc
Q 048639 1097 INSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFS 1137 (1139)
Q Consensus 1097 ~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~~~ 1137 (1139)
.+||||+||++|+|+|+|+|+||+++ +|.|++|++.|..+
T Consensus 1234 ~~~dri~vl~~G~i~~~g~~~~l~~~-~g~y~~l~~~q~~~ 1273 (1284)
T 3g5u_A 1234 QNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQAGA 1273 (1284)
T ss_dssp GSCSEEEEEETBEEEEEECHHHHHHS-CSHHHHHHHHHC--
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHHhhc
Confidence 99999999999999999999999987 89999999988655
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.4e-91 Score=923.44 Aligned_cols=577 Identities=33% Similarity=0.536 Sum_probs=527.3
Q ss_pred cccchhhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC---------------------chhhhhHH
Q 048639 546 KRTTIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYD---------------------PQAKQEVG 604 (1139)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~ 604 (1139)
.+++.++++|.+..+..++.++++++++++.++..|++.++++++.+.+.+ ........
T Consensus 57 ~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1321)
T 4f4c_A 57 VNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVM 136 (1321)
T ss_dssp SSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHH
T ss_pred cCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHH
Confidence 345677788655556667788889999999999999988888776654321 01122344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHH
Q 048639 605 WYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRM 684 (1139)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l 684 (1139)
.+++.++++++..+++.+++.+++.+.+++...++|.++|++++++|++||| ++++|++++|+++|++.+++.+...+
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd--~~~~G~l~sr~~~D~~~i~~~~~~~l 214 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFD--TNHSGTLATKLFDNLERVKEGTGDKI 214 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHH--HTCCTTHHHHHHHHHHHHHHTSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC--CCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888899999999999999999999999999999999999999999 68899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcch
Q 048639 685 SVIVQCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHE 764 (1139)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~ 764 (1139)
..++..++.++++++++++++|.+++++++++|+++++..+..+..++..++.++...+..+.+.|+++|+++||+|++|
T Consensus 215 ~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e 294 (1321)
T 4f4c_A 215 GMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGL 294 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccc
Confidence 99999999999999999999999999999999999999988888888888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 765 ENILQKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWT 844 (1139)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (1139)
+.+.++|.+..++..+...+.....+...++...+..+..++++|+|++++..|.++++.+++++.++.....++..+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~ 374 (1321)
T 4f4c_A 295 RYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGP 374 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888888888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCC
Q 048639 845 LIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSG 924 (1139)
Q Consensus 845 ~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sG 924 (1139)
.+..+..+..+++|+.++++.+++.+........+.+.+|.|+|+||+|+||++++.|+|+|+||+|+|||++|||||||
T Consensus 375 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sG 454 (1321)
T 4f4c_A 375 QLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSG 454 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCC
Confidence 99999999999999999999877665443333344456789999999999998878899999999999999999999999
Q ss_pred CCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCch
Q 048639 925 AGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIH 1004 (1139)
Q Consensus 925 SGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~ 1004 (1139)
||||||+++|+|+|+|++|+|.+||+|++++++++||++|+||||||.||+|||||||.+|+|+++++++++||+.++++
T Consensus 455 sGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~ 534 (1321)
T 4f4c_A 455 CGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAE 534 (1321)
T ss_dssp SCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCH
T ss_pred CcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCe
Q 048639 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRT 1084 (1139)
Q Consensus 1005 ~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~t 1084 (1139)
++|++||+|+||.|||+|.+||||||||||||||++++|+|||||||||+||++||+.|+++|++.. +++|
T Consensus 535 ~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~---------~~~T 605 (1321)
T 4f4c_A 535 KFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA---------KGRT 605 (1321)
T ss_dssp HHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH---------TTSE
T ss_pred hHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh---------CCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999999875 4555
Q ss_pred EEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHHHh
Q 048639 1085 TQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1085 TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~ 1135 (1139)
+|+||||++++.+||+|+||++|+|+|+|+|+||+++ +|.|++|++.|.
T Consensus 606 -~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 606 -TIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp -EEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHH
T ss_pred -EEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhh
Confidence 9999999999999999999999999999999999987 899999998775
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4.3e-84 Score=792.16 Aligned_cols=567 Identities=24% Similarity=0.360 Sum_probs=501.9
Q ss_pred HhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 556 FCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKA 635 (1139)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1139)
+.+.++.++.+++++++..+..++....++++..+++.............+..+++++.++..++.++..++..+.+.+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (587)
T 3qf4_A 15 ARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALIGAVGGIGCTVFASYASQNF 94 (587)
T ss_dssp GGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666667777777777777777778888877776543322233344556666677778888888999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 048639 636 MTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAV 715 (1139)
Q Consensus 636 ~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~ 715 (1139)
..++|.++|++++++|+.||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.++|.++++++++
T Consensus 95 ~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~ 172 (587)
T 3qf4_A 95 GADLRRDLFRKVLSFSISNVN--RFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFL 172 (587)
T ss_dssp HHHHHHHHHHHHHHCCHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 716 MPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGF 795 (1139)
Q Consensus 716 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1139)
+|+++++..+..+..++..++.++..++..+.+.|+++|+++||+|++|+.+.++|.+..++..+...+.....+....+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (587)
T 3qf4_A 173 IPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPL 252 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888887777778888888899999999999999999999999999999999998888887777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 048639 796 SLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPE 875 (1139)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~ 875 (1139)
...+..+..++++|+|++++..|.++++.++++..++.....++..+...+..+..+..+.+|+.++++.+++.+....
T Consensus 253 ~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~- 331 (587)
T 3qf4_A 253 FIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADN- 331 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC-
Confidence 7777788888899999999999999999999999999888899999999999999999999999999987665432211
Q ss_pred CCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCC
Q 048639 876 SSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY 955 (1139)
Q Consensus 876 ~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~ 955 (1139)
..+.++..|.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|++++
T Consensus 332 ~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~ 410 (587)
T 3qf4_A 332 ALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV 410 (587)
T ss_dssp CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGB
T ss_pred ccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccC
Confidence 11122346789999999999743 45799999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 048639 956 NLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035 (1139)
Q Consensus 956 ~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlal 1035 (1139)
+.+++|++++||||||.+|++||+|||.++.+..++++++++++.+++++++.++|+|+||.++++|.+||||||||+||
T Consensus 411 ~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~l 490 (587)
T 3qf4_A 411 KLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSI 490 (587)
T ss_dssp CHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHH
T ss_pred CHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecC
Q 048639 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1036 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~ 1115 (1139)
||||+++|+|||||||||+||+++++.|++.|++.. ++ +|+|+||||++++..||||+||++|+|+|.|+
T Consensus 491 ARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---------~~-~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~ 560 (587)
T 3qf4_A 491 ARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT---------KG-CTTFIITQKIPTALLADKILVLHEGKVAGFGT 560 (587)
T ss_dssp HHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS---------TT-CEEEEEESCHHHHTTSSEEEEEETTEEEEEEC
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC---------CC-CEEEEEecChHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999864 34 45999999999999999999999999999999
Q ss_pred hhHHhhccCChHHHHHHHHhhc
Q 048639 1116 HSTLVAESQGVYSRLYQLQAFS 1137 (1139)
Q Consensus 1116 ~~eLl~~~~g~f~~l~~~~~~~ 1137 (1139)
|+||+++ ++.|+++++.|.+.
T Consensus 561 ~~el~~~-~~~~~~~~~~~~~~ 581 (587)
T 3qf4_A 561 HKELLEH-CKPYREIYESQFGN 581 (587)
T ss_dssp HHHHHHH-CHHHHHHHHHHC--
T ss_pred HHHHHhC-CcHHHHHHHHHhcc
Confidence 9999986 79999999988654
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1e-83 Score=791.30 Aligned_cols=569 Identities=28% Similarity=0.451 Sum_probs=506.4
Q ss_pred hhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 551 FFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGV 630 (1139)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1139)
++++ +.+.++.++.+++++++.++.++.....++++..+++.............++++++++.++..++.+++.++...
T Consensus 25 ~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (598)
T 3qf4_B 25 LRRL-LGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALTSLLFWLQGKIMLT 103 (598)
T ss_dssp HHHH-GGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 344556666666677777777777777778787777765543323334456677777788888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 048639 631 VGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMAL 710 (1139)
Q Consensus 631 ~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l 710 (1139)
.+.+...++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.++|.+++
T Consensus 104 ~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 181 (598)
T 3qf4_B 104 LSQDVVFRLRKELFEKLQRVPVGFFD--RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSL 181 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTHHHH--HSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 711 VAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYG 790 (1139)
Q Consensus 711 v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1139)
++++++|+++++..+..+..++..++.++...+..+.+.|+++|+++||+|++++.+.++|.+..++..+...+.....+
T Consensus 182 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (598)
T 3qf4_B 182 VTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSG 261 (598)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888877788888888899999999999999999999999999999999998888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 048639 791 VIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIE 870 (1139)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 870 (1139)
....+...+..+..++++|+|++++..|.++++.+++++.+......++..+...+..+..+..+++|+.++++.+++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 341 (598)
T 3qf4_B 262 VLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD 341 (598)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 77777777788888889999999999999999999888888888888999999999999999999999999998766543
Q ss_pred CCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCc
Q 048639 871 PDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK 950 (1139)
Q Consensus 871 ~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~ 950 (1139)
.. ...+.++..|.|+++||+|+|++ +.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||+
T Consensus 342 ~~--~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 417 (598)
T 3qf4_B 342 DP--DAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGI 417 (598)
T ss_dssp CS--SCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTE
T ss_pred CC--CCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCE
Confidence 21 11222335678999999999963 357999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 951 GIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 951 di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
|+++++.+.+|+++++|||||.+|++||+|||.++.+..++++++++++.++++++++++|+|+||.+|++|.+||||||
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred EhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 99999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEV 1110 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~i 1110 (1139)
||+||||||+++|+|||||||||+||+++++.|++.|++.. +++ |+|+||||++++..||||+||++|+|
T Consensus 498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---------~~~-t~i~itH~l~~~~~~d~i~~l~~G~i 567 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM---------EGK-TSIIIAHRLNTIKNADLIIVLRDGEI 567 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH---------TTS-EEEEESCCTTHHHHCSEEEEECSSSE
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc---------CCC-EEEEEecCHHHHHcCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999764 344 59999999999999999999999999
Q ss_pred EEecChhHHhhccCChHHHHHHHHhhc
Q 048639 1111 VEMGSHSTLVAESQGVYSRLYQLQAFS 1137 (1139)
Q Consensus 1111 ve~G~~~eLl~~~~g~f~~l~~~~~~~ 1137 (1139)
+|.|+|+||+++ +|.|+++++.|.+.
T Consensus 568 ~~~g~~~~l~~~-~~~~~~~~~~~~~~ 593 (598)
T 3qf4_B 568 VEMGKHDELIQK-RGFYYELFTSQYGL 593 (598)
T ss_dssp EECSCHHHHHHT-TCHHHHHHHHHHGG
T ss_pred EEECCHHHHHhC-CCHHHHHHHHHhhh
Confidence 999999999986 89999999887653
No 6
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.3e-84 Score=852.05 Aligned_cols=574 Identities=34% Similarity=0.559 Sum_probs=515.1
Q ss_pred chhhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCch--------------------hhhhHHHHHH
Q 048639 549 TIFFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQ--------------------AKQEVGWYSL 608 (1139)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~ 608 (1139)
..+++++.+..+..+..++++++++++.++..|++.++++..++.+.... .......|.+
T Consensus 33 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (1284)
T 3g5u_A 33 VSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAY 112 (1284)
T ss_dssp CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHH
Confidence 44556644444556777788888888888889988888877665443110 1123345778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHH
Q 048639 609 AFSLVGLFSLFTHTLQHYFFGVVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIV 688 (1139)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~ 688 (1139)
+|++++++..++.+++.+++.+.+.+...++|.++|++++++|++||| ++++|++++|+++|++.+++.++..+..++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~--~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~ 190 (1284)
T 3g5u_A 113 YYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFD--VHDVGELNTRLTDDVSKINEGIGDKIGMFF 190 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHH--SCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999999999999 688999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHH
Q 048639 689 QCISSILIATIVSLVVDWRMALVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENIL 768 (1139)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~l~lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~ 768 (1139)
..++.++++++++++.+|.+++++++++|+++++..++.+..++..++.++..++..+++.|+++|+++||+|++|+.+.
T Consensus 191 ~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~ 270 (1284)
T 3g5u_A 191 QAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKEL 270 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHH
Confidence 99999999999999999999999999999999998888888888888888888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 769 QKAKISLEKTKRSSRKESIKYGVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPT 848 (1139)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (1139)
++|.+..++..+...+.....+...++...+..+..++++|+|++++..|.+++|.+++++.++.....++..+...+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (1284)
T 3g5u_A 271 ERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEA 350 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888777888888888888888999999999999999999999888887777778889999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHH
Q 048639 849 VISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKS 928 (1139)
Q Consensus 849 ~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKS 928 (1139)
+..+..+++|++++++.+++.++.......++...|.|+|+||+|+|+++++.++|+|+||+|+|||++|||||||||||
T Consensus 351 ~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKS 430 (1284)
T 3g5u_A 351 FANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKS 430 (1284)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHH
T ss_pred HHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHH
Confidence 99999999999999987766543222222233457899999999999876556899999999999999999999999999
Q ss_pred HHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHh
Q 048639 929 SVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFIS 1008 (1139)
Q Consensus 929 TL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~ 1008 (1139)
||+++|+|+|+|++|+|.+||+|+++++++++|++|++|||||.||++||+|||.++.+..++++++++++.+++++++.
T Consensus 431 Tl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~ 510 (1284)
T 3g5u_A 431 TTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIM 510 (1284)
T ss_dssp HHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred hCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEE
Q 048639 1009 SLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQIT 1088 (1139)
Q Consensus 1009 ~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~ 1088 (1139)
++|+|+||.+||+|.+|||||||||||||||+++|+|||||||||+||+++++.|++.+++.. +++ |+|+
T Consensus 511 ~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~---------~~~-t~i~ 580 (1284)
T 3g5u_A 511 KLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR---------EGR-TTIV 580 (1284)
T ss_dssp HSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH---------TTS-EEEE
T ss_pred hccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc---------CCC-EEEE
Confidence 999999999999999999999999999999999999999999999999999999999998764 444 5999
Q ss_pred EecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHHHh
Q 048639 1089 VAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1089 IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~ 1135 (1139)
||||++++.+||||+||++|+|+|.|+|+||+++ +|.|++++..|.
T Consensus 581 itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 581 IAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQT 626 (1284)
T ss_dssp ECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC
T ss_pred EecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHhh
Confidence 9999999999999999999999999999999986 899999997664
No 7
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.1e-82 Score=779.90 Aligned_cols=564 Identities=30% Similarity=0.445 Sum_probs=497.7
Q ss_pred hhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchh---hhhH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 557 CLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQA---KQEV----GWYSLAFSLVGLFSLFTHTLQHYFFG 629 (1139)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (1139)
.+.++.++.+++++++.++..+..+..++++...++....... .... ..+..+++++.++..++.+++.++..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (578)
T 4a82_A 7 QFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQ 86 (578)
T ss_dssp HHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666677777777665543211 1112 23444555566677788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 048639 630 VVGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMA 709 (1139)
Q Consensus 630 ~~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 709 (1139)
+.+.+...++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++++++++.++|.++
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 164 (578)
T 4a82_A 87 WTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLT 164 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999 688999999999999999999988888888888888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 710 LVAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKY 789 (1139)
Q Consensus 710 lv~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1139)
+++++++|+++++..+..+..++..++.++..++..+.+.|+++|+++||+|++|+.+.++|.+..++..+...+...+.
T Consensus 165 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (578)
T 4a82_A 165 LAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWN 244 (578)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888887788888888889999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 048639 790 GVIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEI 869 (1139)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 869 (1139)
+....+...+..+..++++|+|++++..|.++++.++++..++.....++..+...+..+..+..+++|+.++++.+++.
T Consensus 245 ~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 324 (578)
T 4a82_A 245 AYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDI 324 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88888888888888889999999999999999999999999998899999999999999999999999999999876654
Q ss_pred CCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECC
Q 048639 870 EPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDG 949 (1139)
Q Consensus 870 ~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG 949 (1139)
+.... ..+.+...|.|+++||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||
T Consensus 325 ~~~~~-~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 402 (578)
T 4a82_A 325 KNGVG-AQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDG 402 (578)
T ss_dssp CCCTT-CCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETT
T ss_pred cCCCC-ccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECC
Confidence 32211 11222346789999999999753 45799999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH
Q 048639 950 KGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029 (1139)
Q Consensus 950 ~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1029 (1139)
+|+++++.+++|++++||||||.+|++||+|||.++.+..++++++++++.++++++++++|+|+||.+|++|.+|||||
T Consensus 403 ~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq 482 (578)
T 4a82_A 403 HNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQ 482 (578)
T ss_dssp EEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHH
T ss_pred EEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHH
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCE
Q 048639 1030 KQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGE 1109 (1139)
Q Consensus 1030 rQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ 1109 (1139)
|||+||||||+++|+|||||||||+||+++++.+++.+++.. +++ |+|+||||++++..||||+||++|+
T Consensus 483 ~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---------~~~-t~i~itH~l~~~~~~d~i~~l~~G~ 552 (578)
T 4a82_A 483 KQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS---------KDR-TTLIVAHRLSTITHADKIVVIENGH 552 (578)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT---------TTS-EEEEECSSGGGTTTCSEEEEEETTE
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc---------CCC-EEEEEecCHHHHHcCCEEEEEECCE
Confidence 999999999999999999999999999999999999998765 344 5999999999999999999999999
Q ss_pred EEEecChhHHhhccCChHHHHHHHHh
Q 048639 1110 VVEMGSHSTLVAESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1110 ive~G~~~eLl~~~~g~f~~l~~~~~ 1135 (1139)
|+|.|+|+||+++ +|.|+++++.|.
T Consensus 553 i~~~g~~~el~~~-~~~~~~~~~~q~ 577 (578)
T 4a82_A 553 IVETGTHRELIAK-QGAYEHLYSIQN 577 (578)
T ss_dssp EEEEECHHHHHHT-TSHHHHHHTTTT
T ss_pred EEEECCHHHHHhC-CcHHHHHHHhhc
Confidence 9999999999986 799999998763
No 8
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=4.6e-81 Score=767.03 Aligned_cols=561 Identities=27% Similarity=0.409 Sum_probs=493.0
Q ss_pred hchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 558 LNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMT 637 (1139)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1139)
+.++.++.+++++++.++.++..+..++++..+++............++..+++++.++..++.++..++....+.+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (582)
T 3b5x_A 19 YIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVM 98 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555666666666666666666665543211111122233345666777888888899999999999999
Q ss_pred HHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 048639 638 NLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMP 717 (1139)
Q Consensus 638 ~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p 717 (1139)
++|.++|++++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++++++++.++|.+++++++++|
T Consensus 99 ~lr~~l~~~ll~~~~~~~~--~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~ 176 (582)
T 3b5x_A 99 QMRRRLFNHFMHMPVRFFD--QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAP 176 (582)
T ss_pred HHHHHHHHHHHcCCHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999 67899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 718 CHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSL 797 (1139)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1139)
+++++..+..+..++..++.++...+..+.+.|.++|+++||+|+.++.+.++|.+..++..+...+..........+..
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T 3b5x_A 177 VVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQ 256 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888877777777777788888888999999999999999999999999999999999999988888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC
Q 048639 798 CLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESS 877 (1139)
Q Consensus 798 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~ 877 (1139)
.+..+..++++|+|++++..|.+++|.++++..+......++..+...+..+..+..+++|+.++++.+++.++. ..
T Consensus 257 ~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~---~~ 333 (582)
T 3b5x_A 257 MIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG---KY 333 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCC---CC
Confidence 888888888999999999999999999999999999999999999999999999999999999999876543211 11
Q ss_pred CCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh
Q 048639 878 ESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL 957 (1139)
Q Consensus 878 ~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l 957 (1139)
+.++..|.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||+|+++++.
T Consensus 334 ~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~ 412 (582)
T 3b5x_A 334 EAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKL 412 (582)
T ss_pred CCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCH
Confidence 112235789999999999742 2569999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhceEEccccccccccHHHHhccCC-CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGN-EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~-~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
+.+|++++||||+|.+|++|++|||.++. ++.++++++++++.++++++++++|+||||.+|++|.+||||||||+|||
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iA 492 (582)
T 3b5x_A 413 TNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA 492 (582)
T ss_pred HHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHH
Confidence 99999999999999999999999999986 66789999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecCh
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 1116 (1139)
|||+++|+|||||||||+||+++++.|++.|++.. + ++|+|+||||++++..||||+||++|+++|.|+|
T Consensus 493 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---------~-~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b5x_A 493 RALLRDAPVLILDEATSALDTESERAIQAALDELQ---------K-NKTVLVIAHRLSTIEQADEILVVDEGEIIERGRH 562 (582)
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc---------C-CCEEEEEecCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999764 3 3459999999999999999999999999999999
Q ss_pred hHHhhccCChHHHHHHHHh
Q 048639 1117 STLVAESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1117 ~eLl~~~~g~f~~l~~~~~ 1135 (1139)
+||+++ ++.|+++++.|.
T Consensus 563 ~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b5x_A 563 ADLLAQ-DGAYAQLHRIQF 580 (582)
T ss_pred HHHHhC-CcHHHHHHHHhh
Confidence 999986 799999999875
No 9
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.4e-81 Score=767.21 Aligned_cols=561 Identities=30% Similarity=0.445 Sum_probs=492.6
Q ss_pred hchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 558 LNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKAMT 637 (1139)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1139)
+.++.++.+++++++.++..+.....++++..+++............++..+++++.++..++.+++.++....+.+...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (582)
T 3b60_A 19 TIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVM 98 (582)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555556666666666666666666665443221111122223345666777788888899999999999999
Q ss_pred HHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 048639 638 NLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAVMP 717 (1139)
Q Consensus 638 ~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~~p 717 (1139)
++|.++|++++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++++++++.++|.+++++++++|
T Consensus 99 ~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~ 176 (582)
T 3b60_A 99 TMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAP 176 (582)
T ss_dssp HHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 9999999999999999999 67899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 718 CHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGFSL 797 (1139)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1139)
+++++..+..+..++..++.++...+..+.+.|+++|+++||+|+.++.+.++|.+..++..+...+..........+..
T Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T 3b60_A 177 IVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQ 256 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887888777778888888888999999999999999999999999999999999999988888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC
Q 048639 798 CLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESS 877 (1139)
Q Consensus 798 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~ 877 (1139)
.+..+..++++|+|++++..|.+++|.++++..+......++..+...+..+..+..+++|+.++++.+++.+.. ..
T Consensus 257 ~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~---~~ 333 (582)
T 3b60_A 257 LIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG---KR 333 (582)
T ss_dssp HHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCC---CB
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC---CC
Confidence 888888888999999999999999999999999999999999999999999999999999999999876553211 11
Q ss_pred CCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh
Q 048639 878 ESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL 957 (1139)
Q Consensus 878 ~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l 957 (1139)
+.++..|.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||+|+++++.
T Consensus 334 ~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~ 412 (582)
T 3b60_A 334 VIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL 412 (582)
T ss_dssp CCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCH
T ss_pred CCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCH
Confidence 112235789999999999732 2479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhceEEccccccccccHHHHhccCC-CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGN-EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~-~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
+.+|++++||||+|.+|++|++|||.++. +..++++++++++.++++++++++|+||||.+|++|.+||||||||+|||
T Consensus 413 ~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iA 492 (582)
T 3b60_A 413 ASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492 (582)
T ss_dssp HHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred HHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999986 66789999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecCh
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~ 1116 (1139)
|||+++|+|||||||||+||+++++.|++.|++.. ++ +|+|+||||++++..||||+||++|+++|.|+|
T Consensus 493 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---------~~-~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 493 RALLRDSPILILDEATSALDTESERAIQAALDELQ---------KN-RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTH 562 (582)
T ss_dssp HHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH---------TT-SEEEEECSCGGGTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh---------CC-CEEEEEeccHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999764 33 459999999999999999999999999999999
Q ss_pred hHHhhccCChHHHHHHHHh
Q 048639 1117 STLVAESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1117 ~eLl~~~~g~f~~l~~~~~ 1135 (1139)
+||+++ ++.|+++++.|.
T Consensus 563 ~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b60_A 563 SELLAQ-HGVYAQLHKMQF 580 (582)
T ss_dssp HHHHHH-TSSHHHHHHHTC
T ss_pred HHHHHc-CCHHHHHHHHhc
Confidence 999986 799999999874
No 10
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=5.3e-81 Score=768.46 Aligned_cols=566 Identities=33% Similarity=0.504 Sum_probs=476.2
Q ss_pred chhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCch---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 559 NERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQ---AKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGVVGEKA 635 (1139)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (1139)
.++.++.+++++++..+..+..+..++++..+++...... .......+..+++++.++..++.+++.++....+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (595)
T 2yl4_A 14 AYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRI 93 (595)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555566655555432111 1112233444555666677778888889999999999
Q ss_pred HHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 048639 636 MTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMALVAWAV 715 (1139)
Q Consensus 636 ~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~lv~~~~ 715 (1139)
..++|.++|++++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++++++++.++|.++++++++
T Consensus 94 ~~~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 171 (595)
T 2yl4_A 94 VNRLRTSLFSSILRQEVAFFD--KTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSV 171 (595)
T ss_dssp HHHHHHHHHHHHHHSCHHHHH--HSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999 678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 716 MPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYGVIQGF 795 (1139)
Q Consensus 716 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1139)
+|+++++..+..+..++..++.++...+..+.+.|+++|+++||+|+.++.+.++|.+..++..+...+..........+
T Consensus 172 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (595)
T 2yl4_A 172 VPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGA 251 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888888777788888888889999999999999999999999999999999999988888887777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 048639 796 SLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPE 875 (1139)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~ 875 (1139)
...+..+..++++|+|++++..|.+++|.++++..+......++..+...+..+..+..+++|+.++++.+++.+....
T Consensus 252 ~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~- 330 (595)
T 2yl4_A 252 TGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEG- 330 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCC-
Confidence 7777777888889999999999999999999999999999999999999999999999999999999987654332111
Q ss_pred CCCCCCcccc-EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC
Q 048639 876 SSESGRIKGR-IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE 954 (1139)
Q Consensus 876 ~~~~~~~~g~-I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~ 954 (1139)
..++++..|. |+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+++
T Consensus 331 ~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~ 410 (595)
T 2yl4_A 331 VILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQ 410 (595)
T ss_dssp BCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred CCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhh
Confidence 1111223577 999999999975434579999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHhhhceEEccccccccccHHHHhccCCCc---CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHH
Q 048639 955 YNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEA---ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQ 1031 (1139)
Q Consensus 955 ~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~---~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1031 (1139)
++.+.+|++++||||+|.+|++|++|||.++.+. .++++++++++.++++++++++|+|+||++|++|.+|||||||
T Consensus 411 ~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~q 490 (595)
T 2yl4_A 411 LNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQ 490 (595)
T ss_dssp BCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHH
T ss_pred CCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHH
Confidence 9999999999999999999999999999998765 7889999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEE
Q 048639 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVV 1111 (1139)
Q Consensus 1032 rlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~iv 1111 (1139)
|+||||||+++|+|||||||||+||+++++.+++.|++.. ++ +|+|+||||++++..||||+||++|+|+
T Consensus 491 rv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---------~~-~tvi~itH~~~~~~~~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 491 RIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLM---------DG-RTVLVIAHRLSTIKNANMVAVLDQGKIT 560 (595)
T ss_dssp HHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHH---------TT-SEEEEECCCHHHHHHSSEEEEEETTEEE
T ss_pred HHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHh---------cC-CEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999865 33 4599999999999999999999999999
Q ss_pred EecChhHHhhccCChHHHHHHHHhhc
Q 048639 1112 EMGSHSTLVAESQGVYSRLYQLQAFS 1137 (1139)
Q Consensus 1112 e~G~~~eLl~~~~g~f~~l~~~~~~~ 1137 (1139)
|.|+|+||++++++.|+++++.|...
T Consensus 561 ~~g~~~~l~~~~~~~~~~~~~~q~~~ 586 (595)
T 2yl4_A 561 EYGKHEELLSKPNGIYRKLMNKQSFI 586 (595)
T ss_dssp EEECSCC------C------------
T ss_pred EECCHHHHHhCCChHHHHHHHHhhcc
Confidence 99999999985689999999877543
No 11
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7e-79 Score=746.03 Aligned_cols=486 Identities=27% Similarity=0.443 Sum_probs=446.4
Q ss_pred HHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 048639 8 LSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCW 78 (1139)
Q Consensus 8 ~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 78 (1139)
+++...++++..+ +++|..||+++ ++|++++|+++|++.+++++...+..++..+++++++++++++++|
T Consensus 85 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 163 (587)
T 3qf4_A 85 VFASYASQNFGADLRRDLFRKVLSFSISNVNRF-HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINV 163 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544 88899999997 8999999999999999999999888899898899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Q 048639 79 EVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEA 158 (1139)
Q Consensus 79 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 158 (1139)
.+++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 164 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 243 (587)
T 3qf4_A 164 KLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAF 243 (587)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 048639 159 LIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRK 238 (1139)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~ 238 (1139)
...+...++..++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..+.++..+++|+.++++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~ 323 (587)
T 3qf4_A 244 SLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEK 323 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888888887888888888899999999999999999999999999889999999999999999999999999999876
Q ss_pred CCCccCCCCccccCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEE
Q 048639 239 PRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI 318 (1139)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~ 318 (1139)
++..........++.++.|+++||+|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i 402 (587)
T 3qf4_A 324 PAIEEADNALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV 402 (587)
T ss_dssp CSCCCCTTCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEE
T ss_pred CccCCCCCccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEE
Confidence 6542221111222345689999999999753 457999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCCh
Q 048639 319 DSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSG 398 (1139)
Q Consensus 319 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSg 398 (1139)
||+|+.+++.+++|++|+||||+|++|++||+|||.+|.+..+++++.++++.++++++++.+|+|++|.+|++|.+|||
T Consensus 403 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg 482 (587)
T 3qf4_A 403 DELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482 (587)
T ss_dssp SSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH
T ss_pred CCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCH
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChh
Q 048639 399 GQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHH 478 (1139)
Q Consensus 399 GqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 478 (1139)
|||||++|||||+++|+|||||||||+||+++++.+.+.++++.+++|+|+||||++++..||+|++|++|+|+++|+|+
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHhhcc
Q 048639 479 SLLQTSDFYNRLFTMQN 495 (1139)
Q Consensus 479 ~l~~~~~~~~~~~~~~~ 495 (1139)
|++++++.|++++..+.
T Consensus 563 el~~~~~~~~~~~~~~~ 579 (587)
T 3qf4_A 563 ELLEHCKPYREIYESQF 579 (587)
T ss_dssp HHHHHCHHHHHHHHHHC
T ss_pred HHHhCCcHHHHHHHHHh
Confidence 99999999999987653
No 12
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=5.7e-79 Score=747.12 Aligned_cols=485 Identities=34% Similarity=0.495 Sum_probs=446.8
Q ss_pred HHHHHHHHHHHHH---------HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 048639 8 LSWHPKGNRVLMK---------IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCW 78 (1139)
Q Consensus 8 ~~~~~~~~~~~~~---------l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 78 (1139)
+++...++++..+ +++|.+||+++ ++|++++|+++|++.+++++...+..++..++.++++++++++++|
T Consensus 83 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 161 (578)
T 4a82_A 83 YLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV 161 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444455555444 88999999997 8999999999999999999988888888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Q 048639 79 EVSLLIFLVVPMILVIGATYTKRMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEA 158 (1139)
Q Consensus 79 ~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 158 (1139)
.+++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 162 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (578)
T 4a82_A 162 KLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241 (578)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 048639 159 LIKGVGLGMFQSVTFCCWALIIWVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRK 238 (1139)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~ 238 (1139)
++.+...++..++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..+.++..+++|++++++.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~ 321 (578)
T 4a82_A 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99888888888888888888999999999999999999999999998889999999999999999999999999999876
Q ss_pred CCCccCCCCccccCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEE
Q 048639 239 PRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI 318 (1139)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~ 318 (1139)
++..........+...+.|+++||+|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 400 (578)
T 4a82_A 322 YDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400 (578)
T ss_dssp CSSCCCTTCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEE
T ss_pred CcccCCCCccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEE
Confidence 6542221112222345689999999999753 457999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCCh
Q 048639 319 DSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSG 398 (1139)
Q Consensus 319 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSg 398 (1139)
||+|+++.+.+++|++|+||||+|++|++||+|||.+|.+..+++++.++++.++++++++.+|+|++|.+|++|.+|||
T Consensus 401 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSg 480 (578)
T 4a82_A 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG 480 (578)
T ss_dssp TTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCH
T ss_pred CCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCH
Confidence 99999999999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChh
Q 048639 399 GQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHH 478 (1139)
Q Consensus 399 GqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 478 (1139)
|||||++|||||+++|+|+|||||||+||+++++.+.+.++++.+++|+|+||||++.++.||+|++|++|+++++|+|+
T Consensus 481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~ 560 (578)
T 4a82_A 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHR 560 (578)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHhhc
Q 048639 479 SLLQTSDFYNRLFTMQ 494 (1139)
Q Consensus 479 ~l~~~~~~~~~~~~~~ 494 (1139)
|+++.++.|++++..|
T Consensus 561 el~~~~~~~~~~~~~q 576 (578)
T 4a82_A 561 ELIAKQGAYEHLYSIQ 576 (578)
T ss_dssp HHHHTTSHHHHHHTTT
T ss_pred HHHhCCcHHHHHHHhh
Confidence 9999999999998755
No 13
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.9e-78 Score=740.26 Aligned_cols=471 Identities=32% Similarity=0.506 Sum_probs=439.7
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
+++|++||+++ ++|++++|+++|++.+++++...+..++..++.++++++++++++|.+++++++++|+++++..++.+
T Consensus 121 l~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~ 199 (598)
T 3qf4_B 121 QRVPVGFFDRT-PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSS 199 (598)
T ss_dssp HHSCTHHHHHS-CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999997 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+..+...++..++..+..++++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (598)
T 3qf4_B 200 QTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALIS 279 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988888888888888888888889
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIR 260 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (1139)
++|++++.+|.+++|.+++++.+......|+..+...+..+..+..+++|+.++++.+++.... ......+..+.|+++
T Consensus 280 ~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~-~~~~~~~~~~~i~~~ 358 (598)
T 3qf4_B 280 GFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKDDP-DAVELREVRGEIEFK 358 (598)
T ss_dssp HHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCS-SCCCCCSCCCCEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCCCCCCCCeEEEE
Confidence 9999999999999999999988888888899999999999999999999999999876543211 111223345689999
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEec
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQ 340 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 340 (1139)
||+|+|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+|+.+++.+++|++|+||||
T Consensus 359 ~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q 436 (598)
T 3qf4_B 359 NVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQ 436 (598)
T ss_dssp EEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECT
T ss_pred EEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeC
Confidence 99999974 3579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 048639 341 EPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLD 420 (1139)
Q Consensus 341 ~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlD 420 (1139)
+|++|++||+|||.+|.+..+++++.++++.++++++++.+|+|++|.+|++|.+||||||||++|||||+++|+|||||
T Consensus 437 ~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlD 516 (598)
T 3qf4_B 437 DTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILD 516 (598)
T ss_dssp TCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEEC
T ss_pred CCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999999999999998888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhcc
Q 048639 421 EATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQN 495 (1139)
Q Consensus 421 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 495 (1139)
||||+||+++++.+.+.++++.+|+|+|+||||++.+..||+|++|++|+|+++|+|+|++++++.|++++..+.
T Consensus 517 Epts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 591 (598)
T 3qf4_B 517 EATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQY 591 (598)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHHHHH
T ss_pred CCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHh
Confidence 999999999999999999998889999999999999989999999999999999999999999999999987553
No 14
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.8e-76 Score=724.63 Aligned_cols=470 Identities=31% Similarity=0.478 Sum_probs=437.5
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
+++|++||+++ ++|++++|+++|++.+++++...+..++..++.++++++++++++|.+++++++++|+++++..++.+
T Consensus 109 l~~~~~~~~~~-~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~ 187 (582)
T 3b5x_A 109 MHMPVRFFDQE-STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSK 187 (582)
T ss_pred HcCCHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999987 89999999999999999999999999999999999999999999999999999999999888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+......++..++..+..++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 267 (582)
T 3b5x_A 188 RFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVL 267 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888888888888888889
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIR 260 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (1139)
++|++++.+|.+++|.+++++.+......|+..+...+..++++..+++|+.++++.+++.... ..+.+...+.|+++
T Consensus 268 ~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~~ 345 (582)
T 3b5x_A 268 FLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG--KYEAERVNGEVDVK 345 (582)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCC--CCCCCCCCCeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999876543211 11112234579999
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEec
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQ 340 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 340 (1139)
||+|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+|+.+.+.+++|++|+||||
T Consensus 346 ~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 424 (582)
T 3b5x_A 346 DVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQ 424 (582)
T ss_pred EEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcC
Confidence 999999743 2569999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 048639 341 EPSLFTGSLMDNIKVGN-MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLL 419 (1139)
Q Consensus 341 ~~~l~~~ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illl 419 (1139)
+|++|++|++|||.+|. ++.+++++.++++.++++++++++|+|++|.+|++|.+||||||||++|||||+++|+||||
T Consensus 425 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illl 504 (582)
T 3b5x_A 425 NVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLIL 504 (582)
T ss_pred CCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999987 66778899999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhc
Q 048639 420 DEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494 (1139)
Q Consensus 420 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 494 (1139)
|||||+||+++++.+.+.++++.+|+|+|+||||++.+..||+|++|++|++++.|+|+|+++.++.|++++..|
T Consensus 505 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q 579 (582)
T 3b5x_A 505 DEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579 (582)
T ss_pred ECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHh
Confidence 999999999999999999999878999999999999998999999999999999999999999899999998765
No 15
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.2e-76 Score=727.43 Aligned_cols=474 Identities=38% Similarity=0.582 Sum_probs=424.4
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
+++|++||+++ ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++++|+++++..++.+
T Consensus 106 ~~~~~~~~~~~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~ 184 (595)
T 2yl4_A 106 LRQEVAFFDKT-RTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGR 184 (595)
T ss_dssp HHSCHHHHHHS-CHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999987 89999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+..+...++..++..+..++++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (595)
T 2yl4_A 185 YLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVL 264 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888888888888887777888888
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCcc-EEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGN-IDI 259 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~-i~~ 259 (1139)
++|++++.+|.+++|.+++++.+......|+..+...+..+.++..+++|+.++++.+++..............+. |++
T Consensus 265 ~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 344 (595)
T 2yl4_A 265 YKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEF 344 (595)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCCcCCCCCeEEE
Confidence 9999999999999999999999999999999999999999999999999999999876543211111111223457 999
Q ss_pred EeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEe
Q 048639 260 RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVS 339 (1139)
Q Consensus 260 ~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 339 (1139)
+||+|+|++++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+|+.+.+.+++|++|+|||
T Consensus 345 ~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 424 (595)
T 2yl4_A 345 KNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVS 424 (595)
T ss_dssp EEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEEC
T ss_pred EEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEc
Confidence 99999997543357999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCE
Q 048639 340 QEPSLFTGSLMDNIKVGNMD---ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPI 416 (1139)
Q Consensus 340 Q~~~l~~~ti~~ni~~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~i 416 (1139)
|+|++|++||+|||.+|.+. .+++++.++++.++++++++++|+|++|.+|++|.+||||||||++|||||+++|+|
T Consensus 425 Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~i 504 (595)
T 2yl4_A 425 QEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKI 504 (595)
T ss_dssp SSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSE
T ss_pred cCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999765 678899999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhcc-chHHHHHHhhcc
Q 048639 417 LLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQT-SDFYNRLFTMQN 495 (1139)
Q Consensus 417 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 495 (1139)
+|||||||+||+++++.+.+.++++.+++|+|+||||++.+..||+|++|++|++++.|+|+|++++ ++.|++++..|.
T Consensus 505 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~q~ 584 (595)
T 2yl4_A 505 LLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 584 (595)
T ss_dssp EEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C----------
T ss_pred EEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCChHHHHHHHHhh
Confidence 9999999999999999999999998789999999999999988999999999999999999999884 788888876553
No 16
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=3e-76 Score=724.31 Aligned_cols=470 Identities=33% Similarity=0.515 Sum_probs=437.2
Q ss_pred HcCCcccccccCCchhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 21 IGGEVGAFDTDLSTGKVITGVSSHMSVIRDAIGEKLGHFLSSFATFFSGVLIAVICCWEVSLLIFLVVPMILVIGATYTK 100 (1139)
Q Consensus 21 l~~~~~~f~~~~~~G~l~~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~l~~l~~~~~~~~~~~~~~~ 100 (1139)
+++|++||+++ ++|++++|+++|++.+++++...+..++..++.+++.++++++++|.+++++++++|+++++..++.+
T Consensus 109 ~~~~~~~~~~~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~ 187 (582)
T 3b60_A 109 MGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSK 187 (582)
T ss_dssp HTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999997 89999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 101 RMNAVSATKLLYLSEATSMIEQTISQIKTVFAFVGERSEIKSFSDCMDKQIIISRGEALIKGVGLGMFQSVTFCCWALII 180 (1139)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1139)
+.++..++.++..+++.+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+......++..++..+..++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (582)
T 3b60_A 188 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVL 267 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888888888888888888889
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEE
Q 048639 181 WVGAVVVTAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIR 260 (1139)
Q Consensus 181 ~~g~~~v~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 260 (1139)
++|++++.+|.+++|.+++++.+......|+..+...+..+.++..+++|+.++++.+++.... ..+.++..+.|+++
T Consensus 268 ~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~~ 345 (582)
T 3b60_A 268 YAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG--KRVIDRATGDLEFR 345 (582)
T ss_dssp HHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCCC--CBCCSCCCCCEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC--CCCCCCCCCcEEEE
Confidence 9999999999999999999999999999999999999999999999999999999876543211 11112234579999
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEec
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQ 340 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 340 (1139)
||+|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+|+.+.+.+++|++|+||||
T Consensus 346 ~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 424 (582)
T 3b60_A 346 NVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQ 424 (582)
T ss_dssp EEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECS
T ss_pred EEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEcc
Confidence 999999742 2569999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEE
Q 048639 341 EPSLFTGSLMDNIKVGN-MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLL 419 (1139)
Q Consensus 341 ~~~l~~~ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illl 419 (1139)
+|++|++|++|||.++. ++.+++++.++++.++++++++++|+|++|.+|++|.+||||||||++|||||+++|+|+||
T Consensus 425 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illl 504 (582)
T 3b60_A 425 NVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILIL 504 (582)
T ss_dssp SCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred CCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 99999999999999987 66788999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhc
Q 048639 420 DEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494 (1139)
Q Consensus 420 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 494 (1139)
|||||+||+++++.+.+.++++.+|+|+|+||||++.+..||+|++|++|++++.|+|+|+++.++.|++++..|
T Consensus 505 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q 579 (582)
T 3b60_A 505 DEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579 (582)
T ss_dssp ETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHHT
T ss_pred ECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHh
Confidence 999999999999999999999878999999999999998999999999999999999999999888999998765
No 17
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.8e-66 Score=632.06 Aligned_cols=450 Identities=23% Similarity=0.301 Sum_probs=328.6
Q ss_pred cEEE--------EeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEE---------EE
Q 048639 256 NIDI--------RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI---------LI 318 (1139)
Q Consensus 256 ~i~~--------~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i---------~~ 318 (1139)
.|++ +|++++|++. ..+|+|+| ++++||+++|+||||||||||+++|+|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 3788 8999999642 25899999 999999999999999999999999999999999996 35
Q ss_pred CCccCCCCCHH--HHhcceEEEecCCC----CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCcccccc
Q 048639 319 DSLNIKDLDLK--SLRKNIGAVSQEPS----LFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQR 392 (1139)
Q Consensus 319 ~g~~~~~~~~~--~~~~~i~~v~Q~~~----l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~ 392 (1139)
+|.++...... ..+..+++++|... ++.+|++||+...... + .+.+.++.+ |++......
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~---~---------~~~~~L~~l--gL~~~~~~~ 225 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEV---G---------KFEEVVKEL--ELENVLDRE 225 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCS---S---------CHHHHHHHT--TCTTGGGSB
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHHH---H---------HHHHHHHHc--CCCchhCCC
Confidence 56554321111 12346889998743 3456999998753211 1 122344555 455556777
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcE
Q 048639 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQ 470 (1139)
Q Consensus 393 g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~ 470 (1139)
..+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|+++.
T Consensus 226 ~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEP 305 (607)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCc
Confidence 88999999999999999999999999999999999999999999998874 48999999999999876 99999998542
Q ss_pred EEEecChhhhhccchHHHHHHhhccCCCCCCcCcccccccccccchhhhhhhcccCchhhhhhcccccchhhhcccccch
Q 048639 471 VTETGTHHSLLQTSDFYNRLFTMQNLRPIDDSRTKASTVESTSTEQQISVVEQLEEPEESKRELSASTGQEEVKGKRTTI 550 (1139)
Q Consensus 471 i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (1139)
. ..|.... + . ..
T Consensus 306 ~-~~g~~~~----------------------------~---~--------------------------~~---------- 317 (607)
T 3bk7_A 306 G-VYGIFSK----------------------------P---K--------------------------GT---------- 317 (607)
T ss_dssp T-TEEEECC----------------------------C---E--------------------------EH----------
T ss_pred c-ccceecc----------------------------c---h--------------------------hH----------
Confidence 1 1110000 0 0 00
Q ss_pred hhHHHHhhchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 551 FFRIWFCLNERELLRLVVGTVAAAFSGISKPLFGFFIITIGVAYYDPQAKQEVGWYSLAFSLVGLFSLFTHTLQHYFFGV 630 (1139)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (1139)
+.... . ....
T Consensus 318 ---------~~~i~--------~----------------~~~~------------------------------------- 327 (607)
T 3bk7_A 318 ---------RNGIN--------E----------------FLQG------------------------------------- 327 (607)
T ss_dssp ---------HHHHH--------H----------------HHHT-------------------------------------
T ss_pred ---------HHHHH--------H----------------HHhh-------------------------------------
Confidence 00000 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCcccccCCCChhHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 048639 631 VGEKAMTNLRRTLYTGVLRNEIAWFEKPQNDAGSLTSRIVSDTSMVKAIISDRMSVIVQCISSILIATIVSLVVDWRMAL 710 (1139)
Q Consensus 631 ~~~~~~~~l~~~l~~~ll~~~~~ff~~~~~~~G~i~~r~~~D~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~l 710 (1139)
+....+
T Consensus 328 ------------------------~~~~~~-------------------------------------------------- 333 (607)
T 3bk7_A 328 ------------------------YLKDEN-------------------------------------------------- 333 (607)
T ss_dssp ------------------------EETTTT--------------------------------------------------
T ss_pred ------------------------cchhhh--------------------------------------------------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHhhcchHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048639 711 VAWAVMPCHFIGGLIQAKSAQGFSGDSAAAHTEFISLTSESASNIRTVASFCHEENILQKAKISLEKTKRSSRKESIKYG 790 (1139)
Q Consensus 711 v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1139)
.
T Consensus 334 -----------------------~-------------------------------------------------------- 334 (607)
T 3bk7_A 334 -----------------------V-------------------------------------------------------- 334 (607)
T ss_dssp -----------------------E--------------------------------------------------------
T ss_pred -----------------------h--------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 048639 791 VIQGFSLCLWNIAHAVALWYTAVLIDKKQATFRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIE 870 (1139)
Q Consensus 791 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 870 (1139)
.....+....
T Consensus 335 ----------------------------------------------------------------------~~~~~~~~~~ 344 (607)
T 3bk7_A 335 ----------------------------------------------------------------------RFRPYEIRFT 344 (607)
T ss_dssp ----------------------------------------------------------------------ECCSSCCCCC
T ss_pred ----------------------------------------------------------------------hccccccccc
Confidence 0000000000
Q ss_pred CCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCc
Q 048639 871 PDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK 950 (1139)
Q Consensus 871 ~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~ 950 (1139)
...+... ....-.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|.|+++|++|+|.+
T Consensus 345 ~~~~~~~--~~~~~~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--- 415 (607)
T 3bk7_A 345 KLSERVD--VERETLVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--- 415 (607)
T ss_dssp CSTTSCC--CCCCEEEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC---
T ss_pred cCCCccc--ccCceEEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE---
Confidence 0000000 001124899999999952 3699999999999999999999999999999999999999999976
Q ss_pred ccCCCChHHHhhhceEEcccccc-ccccHHHHhccC-CCc-CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCCh
Q 048639 951 GIKEYNLRRLRSQIGLVQQEPLL-FSCSIRNNICYG-NEA-ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSG 1027 (1139)
Q Consensus 951 di~~~~l~~lR~~i~~V~Qdp~L-F~gTIreNL~~~-~~~-~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSg 1027 (1139)
+.+++|+||++.+ ++.|+++|+... .+. ...+.+.++++..++.++. +.++ .+|||
T Consensus 416 ----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~LSG 474 (607)
T 3bk7_A 416 ----------DLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-------DRNV----EDLSG 474 (607)
T ss_dssp ----------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT-------TSBG----GGCCH
T ss_pred ----------eeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHh-------cCCh----hhCCH
Confidence 2469999999865 578999998653 111 1245567777777775432 3333 47999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEe
Q 048639 1028 GQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMD 1106 (1139)
Q Consensus 1028 GQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~ 1106 (1139)
|||||++|||||+++|+||||||||++||+.+...+.+.|+++. . ..++|||+|+|+++.+.. ||||++|+
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~-------~-~~g~tvi~vsHd~~~~~~~adrv~vl~ 546 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLM-------E-KNEKTALVVEHDVLMIDYVSDRLIVFE 546 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH-------H-HTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHH-------H-hCCCEEEEEeCCHHHHHHhCCEEEEEc
Confidence 99999999999999999999999999999999999999998753 0 123469999999999986 99999999
Q ss_pred C--CEEEEecChhHHhh
Q 048639 1107 K--GEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1107 ~--G~ive~G~~~eLl~ 1121 (1139)
+ |++++.|+|++++.
T Consensus 547 ~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 547 GEPGRHGRALPPMGMRE 563 (607)
T ss_dssp EETTTEEEECCCEEHHH
T ss_pred CCcceEEecCCHHHHHh
Confidence 6 88889999999875
No 18
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4e-65 Score=636.55 Aligned_cols=196 Identities=24% Similarity=0.388 Sum_probs=157.0
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
..+...|++++|++ +++|+|+||++++|++++|+||||||||||+++|+| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 35888899999963 469999999999999999999999999999999996 544 4544311 124
Q ss_pred eEEEecCC-CCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccCCCCChHHHHHHHHHHHHc
Q 048639 335 IGAVSQEP-SLF-TGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYS-TELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 335 i~~v~Q~~-~l~-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
++|++|++ .++ ..|+.||+.+..... .+++.+ .++.+ |++ ........+||||||||++|||||+
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~---------~L~~l--gL~~~~~~~~~~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKD---------KLIEF--GFTDEMIAMPISALSGGWKMKLALARAVL 564 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHH---------HHHHT--TCCHHHHHSBGGGCCHHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHH---------HHHHc--CCChhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 78999986 444 459999998621111 333333 33443 332 2345566799999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCcEEE-EecChhhhh
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDGQVT-ETGTHHSLL 481 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~ 481 (1139)
.+|+||||||||++||+.+...+.+.|++ .|+|+|+|||+++.+.. ||+|++|++|+++ ..|+++++.
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 99999999999999999999999999988 68999999999999976 9999999999997 578887764
No 19
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.7e-66 Score=625.21 Aligned_cols=201 Identities=26% Similarity=0.338 Sum_probs=166.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +.++
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 4899999999942 3689999999999999999999999999999999999999999986 2369
Q ss_pred eEEcccccc-ccccHHHHhccC-CCc-CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 048639 965 GLVQQEPLL-FSCSIRNNICYG-NEA-ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041 (1139)
Q Consensus 965 ~~V~Qdp~L-F~gTIreNL~~~-~~~-~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr 1041 (1139)
+||||++.. +..|+.+|+... .+. ...+.+.++++..++.+.. + ....+||||||||++|||||++
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLY-------D----REVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGT-------T----SBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhh-------c----CChhhCCHHHHHHHHHHHHHHh
Confidence 999999976 577999998643 111 1234566666666665432 2 2335799999999999999999
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeC--CEEEEecChhH
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDK--GEVVEMGSHST 1118 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~--G~ive~G~~~e 1118 (1139)
+|++|||||||++||..+...|.+.|+++. . ..++|||+|||+++.+.. ||||++|++ |++++.|+|++
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~-------~-~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLM-------E-KNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHH-------H-HHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHH-------H-hCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 999999999999999999999999998753 0 123459999999999986 999999996 78889999998
Q ss_pred Hhh
Q 048639 1119 LVA 1121 (1139)
Q Consensus 1119 Ll~ 1121 (1139)
++.
T Consensus 491 ~~~ 493 (538)
T 1yqt_A 491 MRE 493 (538)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
No 20
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=3.6e-65 Score=636.85 Aligned_cols=204 Identities=25% Similarity=0.399 Sum_probs=136.1
Q ss_pred CccccceeEEecCCCEEEEECCCCCcHHHHH---------------------HHHHhccCCC-------ccEEEECCccC
Q 048639 272 QLILKGFSLSIPAGKMVALVGSSGCGKSTVI---------------------SLVARFYDPS-------NGDILIDSLNI 323 (1139)
Q Consensus 272 ~~~l~~is~~i~~g~~~~ivG~sGsGKSTll---------------------~~l~g~~~~~-------~G~i~~~g~~~ 323 (1139)
..+|+||||+|++||+++|+||||||||||+ +++.|+..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4599999999999999999999999999998 8999999998 45556666554
Q ss_pred CCCCHHHHhcceEEEecCCCCC--------------------cccHHHHHhcCCC-CCC--HHHHHHH-HH-HhcHHHHH
Q 048639 324 KDLDLKSLRKNIGAVSQEPSLF--------------------TGSLMDNIKVGNM-DAD--DEQIYNA-SM-MANAHSFI 378 (1139)
Q Consensus 324 ~~~~~~~~~~~i~~v~Q~~~l~--------------------~~ti~~ni~~g~~-~~~--~~~~~~~-~~-~~~~~~~i 378 (1139)
.. ..+..+++|+|.+.++ ..|++||+.+... ... ..+..+. .. .....+.+
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 32 2244566666654332 3489999987421 100 1111110 00 00111234
Q ss_pred HhCCCCCCcc-ccccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCc
Q 048639 379 SQLPDQYSTE-LGQRGVQLSGGQKQRIAIARAIVKNPP--ILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRM 454 (1139)
Q Consensus 379 ~~l~~g~~t~-i~~~g~~LSgGqkqRi~lARal~~~~~--illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~ 454 (1139)
+.+ |++.. ......+||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. +|+|+|+|||++
T Consensus 187 ~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 187 QNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp HHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 544 34332 466788999999999999999999998 999999999999999999999998874 589999999999
Q ss_pred cchhccCEEEEE------eCcEEEEecChhhhh
Q 048639 455 STIVNADMIAVV------EDGQVTETGTHHSLL 481 (1139)
Q Consensus 455 ~~~~~~d~i~~l------~~G~i~~~g~~~~l~ 481 (1139)
+.+..||+|++| ++|++++.|+++++.
T Consensus 265 ~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 265 DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HHHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHhhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 988789999999 899999999988764
No 21
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=6.2e-64 Score=602.21 Aligned_cols=202 Identities=21% Similarity=0.318 Sum_probs=167.2
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.++++|++++|.+ ..|+.+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. .+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------IL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------ee
Confidence 5899999999952 3688889999999999999999999999999999999999999998763 48
Q ss_pred eEEcccccc-ccccHHHHhccCCCc---CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 965 GLVQQEPLL-FSCSIRNNICYGNEA---ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 965 ~~V~Qdp~L-F~gTIreNL~~~~~~---~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
+++||++.. |..|+++|+...... ...+.+.++++..++.++.+ ....+||||||||++|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLE-----------SNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTT-----------SBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 999999864 578999999753221 22345666777777765432 233579999999999999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeC--CEEEEecChh
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDK--GEVVEMGSHS 1117 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~--G~ive~G~~~ 1117 (1139)
++|+||||||||++||+.+...|.+.|+++.. ..++|||+|||+++.+.. ||||+||++ |.+...++|.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~--------~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~ 473 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTR--------ERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPV 473 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--------HTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCE
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH--------hCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChH
Confidence 99999999999999999999999999987640 234569999999999987 999999986 5667778887
Q ss_pred HHhh
Q 048639 1118 TLVA 1121 (1139)
Q Consensus 1118 eLl~ 1121 (1139)
++..
T Consensus 474 ~~~~ 477 (538)
T 3ozx_A 474 TLKT 477 (538)
T ss_dssp EHHH
T ss_pred HHHH
Confidence 6643
No 22
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.5e-63 Score=555.21 Aligned_cols=279 Identities=46% Similarity=0.742 Sum_probs=249.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCC
Q 048639 845 LIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSG 924 (1139)
Q Consensus 845 ~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sG 924 (1139)
.++.+..++.+++|++++++.+++...... ..+.+...|.|+|+||+|+|++ ..++|+||||+|++||++|||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPG-AGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTT-CBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSC
T ss_pred cchhHHHHHHHHHHHHHHHhCCcccccccc-ccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCC
Confidence 345566677888999999887655432211 1111224578999999999963 3479999999999999999999999
Q ss_pred CCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCch
Q 048639 925 AGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIH 1004 (1139)
Q Consensus 925 SGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~ 1004 (1139)
||||||+++|+|+|+|++|+|.+||.|++.++.+.+|++|+||||+|.+|++||+|||.++.+..++++++++++.++++
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999998778899999999999999
Q ss_pred HHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCe
Q 048639 1005 DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRT 1084 (1139)
Q Consensus 1005 ~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~t 1084 (1139)
+++..+|+||+|.+++.|.+||||||||+||||||+++|+|||||||||+||+++++.|++.|++.. .++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~---------~~~- 240 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC---------ANR- 240 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH---------TTS-
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc---------CCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999875 444
Q ss_pred EEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHHHhhc
Q 048639 1085 TQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQAFS 1137 (1139)
Q Consensus 1085 TvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~~~ 1137 (1139)
|+|+||||++++..||||+||++|+|+|.|+|++|+++ ++.|++|++.|...
T Consensus 241 Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~~ 292 (306)
T 3nh6_A 241 TTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQGQ 292 (306)
T ss_dssp EEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHCC
T ss_pred EEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHhh
Confidence 59999999999999999999999999999999999986 89999999888654
No 23
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-62 Score=595.82 Aligned_cols=200 Identities=25% Similarity=0.366 Sum_probs=164.8
Q ss_pred EeEEEECCCCCCcccccceeEEEeCC-----cEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 889 QNIKFNYPSRPEVTVLNNFSLQIEPG-----LKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 889 ~nvsf~Y~~~~~~~vL~~vsl~I~~G-----e~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
++++|+|++. ..+++++||++++| |++||+||||||||||+++|.|+.+|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 5678889642 35899999999999 8899999999999999999999999999972 22 246
Q ss_pred ceEEccccc-cccccHHHHhccCC--CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 964 IGLVQQEPL-LFSCSIRNNICYGN--EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 964 i~~V~Qdp~-LF~gTIreNL~~~~--~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
++++||++. .|++|+++|+.... .....+...++++..++.+.. +.+ ..+||||||||++|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~-------~~~----~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDII-------DQE----VQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTS-------SSB----SSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhh-------cCC----hhhCCHHHHHHHHHHHHHH
Confidence 999999975 56889999985321 122445667778888775442 223 3579999999999999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeC--CEEEEecChh
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDK--GEVVEMGSHS 1117 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~--G~ive~G~~~ 1117 (1139)
.+|+||||||||++||+.+...+.+.|+++. . ..++|||+|||+++.+.. ||||+||++ |+++..|+|+
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~-------~-~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~ 555 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFI-------L-HNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPE 555 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHH-------H-HHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCE
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-------H-hCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChH
Confidence 9999999999999999999999999998753 0 224469999999999987 999999996 9999999999
Q ss_pred HHhhc
Q 048639 1118 TLVAE 1122 (1139)
Q Consensus 1118 eLl~~ 1122 (1139)
+++..
T Consensus 556 ~~~~~ 560 (608)
T 3j16_B 556 SLLTG 560 (608)
T ss_dssp EHHHH
T ss_pred HHhhh
Confidence 99865
No 24
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=9.6e-61 Score=532.51 Aligned_cols=277 Identities=38% Similarity=0.637 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCC
Q 048639 217 DMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGC 296 (1139)
Q Consensus 217 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGs 296 (1139)
....++++.++++|++++++.+++..............+.|+++||+|+|++ ++++|+||||+|++||++||||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGs 91 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGA 91 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCH
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCc
Confidence 4566778888999999999865543221111112223467999999999974 35699999999999999999999999
Q ss_pred cHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHH
Q 048639 297 GKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHS 376 (1139)
Q Consensus 297 GKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~ 376 (1139)
|||||+++|+|+++|++|+|.+||+++..++..++|++||||||+|++|++||+|||.+|.+..++++++++++.+++.+
T Consensus 92 GKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~ 171 (306)
T 3nh6_A 92 GKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHD 171 (306)
T ss_dssp HHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888899999999999999
Q ss_pred HHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccc
Q 048639 377 FISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMST 456 (1139)
Q Consensus 377 ~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 456 (1139)
++..+|+|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.++..+.+.|+++.+++|+|+||||++.
T Consensus 172 ~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLST 251 (306)
T ss_dssp HHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHH
T ss_pred HHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred hhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhcc
Q 048639 457 IVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQN 495 (1139)
Q Consensus 457 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 495 (1139)
+..||+|++|++|+|++.|+|+++++..+.|++++..+.
T Consensus 252 ~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~ 290 (306)
T 3nh6_A 252 VVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQ 290 (306)
T ss_dssp HHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHH
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHH
Confidence 988999999999999999999999999999999998765
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.9e-53 Score=462.99 Aligned_cols=240 Identities=47% Similarity=0.752 Sum_probs=223.4
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
-+|+++||+++|+.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 369999999999421 3469999999999999999999999999999999999999999999999999999988889999
Q ss_pred ceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 048639 964 IGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP 1043 (1139)
Q Consensus 964 i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p 1043 (1139)
|+||||+|.+|++|++||+.++.+..++++++++++.+++.+++.++|.|+++.+++.+.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876556788899999999999999999999999999999999999999999999999999
Q ss_pred CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhcc
Q 048639 1044 AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAES 1123 (1139)
Q Consensus 1044 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~ 1123 (1139)
+|||||||||+||+.+++.|.+.|++.. . ++|||+|||+++.+..||||++|++|++++.|+++++++++
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~---------~-g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~ 234 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKIC---------K-GRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEP 234 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHH---------T-TSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTST
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHc---------C-CCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999999999999999999763 3 34699999999999889999999999999999999999766
Q ss_pred CChHHHHHHHH
Q 048639 1124 QGVYSRLYQLQ 1134 (1139)
Q Consensus 1124 ~g~f~~l~~~~ 1134 (1139)
.+.|++++..|
T Consensus 235 ~~~~~~l~~~~ 245 (247)
T 2ff7_A 235 ESLYSYLYQLQ 245 (247)
T ss_dssp TCHHHHHHHHH
T ss_pred chHHHHHHHhh
Confidence 78999998765
No 26
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=3.2e-52 Score=456.98 Aligned_cols=242 Identities=43% Similarity=0.760 Sum_probs=222.8
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
+.|+++||+++|++.+..++|+|+||+|++||++||+||||||||||+++|.|+++| +|+|.+||.|+...+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999743224699999999999999999999999999999999999987 8999999999998888889999
Q ss_pred ceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 048639 964 IGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP 1043 (1139)
Q Consensus 964 i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p 1043 (1139)
++||||+|.+|++|++||+.++....+++++.++++.+++.+++..+|+|+++.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999875445678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhcc
Q 048639 1044 AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAES 1123 (1139)
Q Consensus 1044 ~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~ 1123 (1139)
+|||||||||+||+.+++.+.+.|++.. + ++|+|+|||+++.+..||+|++|++|++++.|+|+++++.
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~---------~-~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~- 243 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLR---------K-NRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL- 243 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHT---------T-TSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhc---------C-CCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-
Confidence 9999999999999999999999999864 3 3469999999999988999999999999999999999976
Q ss_pred CChHHHHHHHHhhc
Q 048639 1124 QGVYSRLYQLQAFS 1137 (1139)
Q Consensus 1124 ~g~f~~l~~~~~~~ 1137 (1139)
.+.|.+++..|...
T Consensus 244 ~~~~~~~~~~~~~~ 257 (260)
T 2ghi_A 244 NGEYAEMWNMQSGG 257 (260)
T ss_dssp TSHHHHHHHHHHC-
T ss_pred ChHHHHHHHhhhhh
Confidence 78999999877543
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=7.1e-52 Score=450.66 Aligned_cols=238 Identities=45% Similarity=0.746 Sum_probs=220.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
..|+++|++|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 469999999999421 3469999999999999999999999999999999999999999999999999988888888899
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 335 IGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 335 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
|+||||+|.+|+.|++||+.++.+....+++.++++..++.+++.++|.|+++.+++++.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999986555677888888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhcc-chHHHHHHhh
Q 048639 415 PILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQT-SDFYNRLFTM 493 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 493 (1139)
++||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. .+.|..++..
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 999999999999999999999999988778999999999999878999999999999999999999876 6778777654
No 28
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=5.6e-52 Score=457.49 Aligned_cols=244 Identities=41% Similarity=0.705 Sum_probs=220.8
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhh
Q 048639 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~ 962 (1139)
.+.|+++||+++|++.++.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35799999999996422246999999999999999999999999999999999999999999999999999888888999
Q ss_pred hceEEccccccccccHHHHhccCCCcCCH-HHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 048639 963 QIGLVQQEPLLFSCSIRNNICYGNEAASE-AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~gTIreNL~~~~~~~sd-~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr 1041 (1139)
+|+||||+|.+|+.|++|||.++.+...+ +++.++++..++.+++..+|+|+++.+++.+.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999987544444 67888889999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhh
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 1121 (1139)
+|+|||||||||+||+.+.+.|.+.|++... ..++|||+|||+++.+..||+|++|++|++++.|+++++++
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--------~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPE--------WASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLME 245 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTT--------TTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHh--------hcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999997641 22456999999999998899999999999999999999997
Q ss_pred ccCChHHHHHHHHh
Q 048639 1122 ESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1122 ~~~g~f~~l~~~~~ 1135 (1139)
. .+.|.++++.+.
T Consensus 246 ~-~~~~~~~~~~~~ 258 (271)
T 2ixe_A 246 R-GGCYRSMVEALA 258 (271)
T ss_dssp H-TSHHHHHHHC--
T ss_pred C-cHHHHHHHHHhh
Confidence 6 689999987664
No 29
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=1.4e-51 Score=511.63 Aligned_cols=215 Identities=22% Similarity=0.364 Sum_probs=160.2
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHH-Hhcccc-------C---------------
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLAL-LLRFYD-------P--------------- 940 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~l-L~rl~~-------p--------------- 940 (1139)
..|+++|+++ .+|+||||+|++||++||+|+||||||||++. |+++.. |
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 3599999986 16999999999999999999999999999996 766542 2
Q ss_pred ---Ccc-------EEEECCcccCCCCh----------HHHhhhceEEccc------------------------------
Q 048639 941 ---NEG-------IILIDGKGIKEYNL----------RRLRSQIGLVQQE------------------------------ 970 (1139)
Q Consensus 941 ---~~G-------~I~idG~di~~~~l----------~~lR~~i~~V~Qd------------------------------ 970 (1139)
.+| .|.+||.++...+. +.+|+.++.+|++
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 467 78999998865443 3455444333321
Q ss_pred -cccc-------------------------cccHHHHhcc--------CCCcCCHHHHHHHHHHcCchHHHhhCCCCccc
Q 048639 971 -PLLF-------------------------SCSIRNNICY--------GNEAASEAEIVEVSKKANIHDFISSLPDGYDT 1016 (1139)
Q Consensus 971 -p~LF-------------------------~gTIreNL~~--------~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt 1016 (1139)
-.++ .-||.||+.+ .......+++.++++.+++...
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~gL~~~---------- 722 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGLGYL---------- 722 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHTTCTTS----------
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHcCCCcc----------
Confidence 0011 1255555543 2111112344555666555321
Q ss_pred cccCCCCCCChHHHHHHHHHHHhcCC---CCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCc
Q 048639 1017 VVGEKGCQLSGGQKQRIAIARTLLKR---PAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL 1093 (1139)
Q Consensus 1017 ~v~e~G~~LSgGQrQrlalARALlr~---p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl 1093 (1139)
.++.....||||||||++|||||+++ |+||||||||++||+.+.+.|.+.|+++. ..+.|||+|+|++
T Consensus 723 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~---------~~G~tVIvisHdl 793 (842)
T 2vf7_A 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLV---------DAGNTVIAVEHKM 793 (842)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHH---------HTTCEEEEECCCH
T ss_pred cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---------hCCCEEEEEcCCH
Confidence 23455668999999999999999996 69999999999999999999999998764 3345699999999
Q ss_pred hhhhcCCEEEEE------eCCEEEEecChhHHhhccCC
Q 048639 1094 ATVINSDVIVVM------DKGEVVEMGSHSTLVAESQG 1125 (1139)
Q Consensus 1094 ~ti~~~DrI~vl------~~G~ive~G~~~eLl~~~~g 1125 (1139)
+.+..||||++| ++|+|++.|+|+++++.+.+
T Consensus 794 ~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~~~ 831 (842)
T 2vf7_A 794 QVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGS 831 (842)
T ss_dssp HHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTTCTTC
T ss_pred HHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCchh
Confidence 999889999999 69999999999999976444
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-52 Score=454.84 Aligned_cols=237 Identities=38% Similarity=0.707 Sum_probs=219.5
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 346999999999999999999999999999999999999999999999999999888778899999
Q ss_pred EEccccccccccHHHHhccC-CCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC
Q 048639 966 LVQQEPLLFSCSIRNNICYG-NEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA 1044 (1139)
Q Consensus 966 ~V~Qdp~LF~gTIreNL~~~-~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ 1044 (1139)
||||+|.+|++|++|||.++ .+..++++++++++.+++.++++++|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987 45567888999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccC
Q 048639 1045 IMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1045 ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~ 1124 (1139)
|||||||||+||+.+.+.+.+.|++.. . ++|+|+|||+++.+..||||++|++|++++.|+|++++++ .
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~---------~-~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~ 228 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLM---------K-GRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-H 228 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHH---------T-TSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-C
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhc---------C-CCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-c
Confidence 999999999999999999999998764 3 3469999999999888999999999999999999999976 6
Q ss_pred ChHHHHHHHHh
Q 048639 1125 GVYSRLYQLQA 1135 (1139)
Q Consensus 1125 g~f~~l~~~~~ 1135 (1139)
+.|.+++..+.
T Consensus 229 ~~~~~~~~~~~ 239 (243)
T 1mv5_A 229 PLYAKYVSEQL 239 (243)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHHHHhhh
Confidence 78888887654
No 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=5.2e-51 Score=447.38 Aligned_cols=239 Identities=44% Similarity=0.728 Sum_probs=219.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
+.|+++|++|+|++...+++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|+++...+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999753224699999999999999999999999999999999999987 8999999999988888888999
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 335 IGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 335 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
|+||||+|.+|+.|++||+.++.+....+++.++++..++.+++..+|+++++.+++++.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999986555667788888888888889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhc
Q 048639 415 PILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 494 (1139)
+|||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|++++++...+.|..++..+
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 254 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMWNMQ 254 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHhh
Confidence 99999999999999999999999998877899999999999987899999999999999999999988777788777654
No 32
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=7e-51 Score=448.73 Aligned_cols=240 Identities=40% Similarity=0.671 Sum_probs=217.4
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
+.|+++|++|+|++..++++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999974222569999999999999999999999999999999999999999999999999988777788889
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCH-HHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 335 IGAVSQEPSLFTGSLMDNIKVGNMDADD-EQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 335 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
|+||||+|.+|+.||+|||.++.+.... +++.+++...++.++++.+|+|+++.+++++.+|||||||||+|||||+++
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998654333 556667777777889999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHH
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLF 491 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 491 (1139)
|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++....+.|.+++
T Consensus 175 p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 254 (271)
T 2ixe_A 175 PRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSMV 254 (271)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHHHHHHH
Confidence 999999999999999999999999998754 899999999999987899999999999999999999988778888887
Q ss_pred hhc
Q 048639 492 TMQ 494 (1139)
Q Consensus 492 ~~~ 494 (1139)
..+
T Consensus 255 ~~~ 257 (271)
T 2ixe_A 255 EAL 257 (271)
T ss_dssp HC-
T ss_pred HHh
Confidence 644
No 33
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-50 Score=506.95 Aligned_cols=220 Identities=27% Similarity=0.413 Sum_probs=164.0
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHH---------HHHhccccC------Cc------
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVL---------ALLLRFYDP------NE------ 942 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~---------~lL~rl~~p------~~------ 942 (1139)
+.+++++++ .+.|+||||+|++||.+||+|+||||||||+ +++.+...+ .+
T Consensus 588 ~~l~v~~~~--------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~ 659 (916)
T 3pih_A 588 ASLKIKGVR--------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENID 659 (916)
T ss_dssp SEEEEEEEC--------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCC
T ss_pred ceEEEeeec--------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhcccccccccccccccccccc
Confidence 346666653 2379999999999999999999999999997 233333222 22
Q ss_pred cEEEECCcccCCCCh----------HHHh-------------------------------hhceEEccccccc-------
Q 048639 943 GIILIDGKGIKEYNL----------RRLR-------------------------------SQIGLVQQEPLLF------- 974 (1139)
Q Consensus 943 G~I~idG~di~~~~l----------~~lR-------------------------------~~i~~V~Qdp~LF------- 974 (1139)
+.|.+|..++...+. +.+| +..|+++|+..++
T Consensus 660 ~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c 739 (916)
T 3pih_A 660 KMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVEC 739 (916)
T ss_dssp EEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEEC
T ss_pred ceEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeec
Confidence 336666666543221 1112 2357777776544
Q ss_pred --------------------------cccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChH
Q 048639 975 --------------------------SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGG 1028 (1139)
Q Consensus 975 --------------------------~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG 1028 (1139)
..|+++++.++......++..++++.+||.. ..++..+.+||||
T Consensus 740 ~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL~~----------~~lgq~~~~LSGG 809 (916)
T 3pih_A 740 DVCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGLGY----------VKLGQPATTLSGG 809 (916)
T ss_dssp TTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTGGG----------SBTTCCSTTCCHH
T ss_pred ccccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCCch----------hhccCCccCCCHH
Confidence 2467777776643333456667777777742 2356677899999
Q ss_pred HHHHHHHHHHhcCCC---CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEE
Q 048639 1029 QKQRIAIARTLLKRP---AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVM 1105 (1139)
Q Consensus 1029 QrQrlalARALlr~p---~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl 1105 (1139)
||||++|||||+++| +||||||||++||+.+.+.|++.|+++. ..+.|||+|+|+++.+..||+|++|
T Consensus 810 ErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~---------~~G~TVIvI~HdL~~i~~ADrIivL 880 (916)
T 3pih_A 810 EAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLV---------DRGNTVIVIEHNLDVIKNADHIIDL 880 (916)
T ss_dssp HHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHH---------HTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---------hcCCEEEEEeCCHHHHHhCCEEEEe
Confidence 999999999999876 7999999999999999999999999764 2344699999999999999999999
Q ss_pred ------eCCEEEEecChhHHhhccCChHHHH
Q 048639 1106 ------DKGEVVEMGSHSTLVAESQGVYSRL 1130 (1139)
Q Consensus 1106 ------~~G~ive~G~~~eLl~~~~g~f~~l 1130 (1139)
++|+|++.|+|++++++++++..++
T Consensus 881 gp~gg~~~G~Iv~~Gtpeel~~~~~syt~~~ 911 (916)
T 3pih_A 881 GPEGGKEGGYIVATGTPEEIAKNPHSYTGRF 911 (916)
T ss_dssp ESSSGGGCCEEEEEESHHHHHSCTTCHHHHH
T ss_pred cCCCCCCCCEEEEEcCHHHHHhCCchHHHHH
Confidence 8999999999999998754443333
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-50 Score=463.76 Aligned_cols=235 Identities=29% Similarity=0.504 Sum_probs=218.5
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHh
Q 048639 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961 (1139)
Q Consensus 882 ~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR 961 (1139)
..+.|+++||+++|+.. +.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||.|+..++.+.+|
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 44689999999999632 3579999999999999999999999999999999999998 899999999999999999999
Q ss_pred hhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 048639 962 SQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr 1041 (1139)
++++||||++.+|+.|+++|+.++. ...+++++++++.+++.+++++.|.++++.+++.|.+||||||||+||||||++
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998653 467889999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhh
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 1121 (1139)
+|+|||||||||+||+.++..+++.|++.. . ++|+|+|||+++.+..||||+||++|+|++.|+|+|+++
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~---------~-~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAF---------A-DCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYH 242 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTT---------T-TSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHh---------C-CCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999998653 3 355999999999988899999999999999999999999
Q ss_pred ccCChHHH
Q 048639 1122 ESQGVYSR 1129 (1139)
Q Consensus 1122 ~~~g~f~~ 1129 (1139)
++...|..
T Consensus 243 ~p~~~~va 250 (390)
T 3gd7_A 243 YPADRFVA 250 (390)
T ss_dssp CCSBHHHH
T ss_pred CCCchHHH
Confidence 87777754
No 35
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.6e-51 Score=446.18 Aligned_cols=236 Identities=46% Similarity=0.778 Sum_probs=217.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|++|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 346999999999999999999999999999999999999999999999999998777667788999
Q ss_pred EEecCCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC
Q 048639 337 AVSQEPSLFTGSLMDNIKVG-NMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP 415 (1139)
Q Consensus 337 ~v~Q~~~l~~~ti~~ni~~g-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~ 415 (1139)
||||+|.+|+.|++|||.++ .+...++++.++++..++.++++++|.|+++.+++++.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998 44556777888888888888899999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhc
Q 048639 416 ILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQ 494 (1139)
Q Consensus 416 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 494 (1139)
+||||||||+||+.+++.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+..+.|..++..+
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 238 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHHCC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHHHhh
Confidence 9999999999999999999999988777899999999999887799999999999999999999988777788887644
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.8e-48 Score=421.45 Aligned_cols=230 Identities=33% Similarity=0.513 Sum_probs=204.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|+.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| ++
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 34799999999999999999999999999999999999999999999999 39
Q ss_pred eEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC
Q 048639 965 GLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA 1044 (1139)
Q Consensus 965 ~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ 1044 (1139)
+||||+|.+|..|++|||.++.. ..+++..++++.+++.+.+..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998743 33456677888899988888899999999999999999999999999999999999
Q ss_pred EEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccC
Q 048639 1045 IMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1045 ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~ 1124 (1139)
|||||||||+||+.+++.+.+.|.+.. +..+++|+|+|||+++.+..||+|++|++|++++.|+|++++++ .
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~-------~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~ 219 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPK-------GMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-D 219 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTT-------STTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-T
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHH-------hhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-c
Confidence 999999999999999999999985211 01234569999999999888999999999999999999999976 7
Q ss_pred ChHHHHHHHHhhc
Q 048639 1125 GVYSRLYQLQAFS 1137 (1139)
Q Consensus 1125 g~f~~l~~~~~~~ 1137 (1139)
+.|.+++..|..+
T Consensus 220 ~~~~~~~~~~~~~ 232 (237)
T 2cbz_A 220 GAFAEFLRTYASH 232 (237)
T ss_dssp SHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHhh
Confidence 8999999887644
No 37
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-48 Score=446.15 Aligned_cols=227 Identities=29% Similarity=0.517 Sum_probs=212.4
Q ss_pred CccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhc
Q 048639 254 DGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333 (1139)
Q Consensus 254 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 333 (1139)
.+.|+++|++|+|+.. +.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+.+.+|+
T Consensus 17 ~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 3579999999999632 3569999999999999999999999999999999999998 9999999999999999999999
Q ss_pred ceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 334 NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
+|+||||++.+|+.||+||+.+.. ....+++.++++..++.+++++.|.++++.+++.+.+|||||||||+|||||+++
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999998654 3467888999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhcc
Q 048639 414 PPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|++||||||||+||+.++..+.+.|+++.+++|+|+|||+++.+..||||++|++|+|++.|+++++.+.
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~ 243 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHY 243 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHC
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999887778999999999998888999999999999999999999865
No 38
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=6e-48 Score=415.52 Aligned_cols=222 Identities=28% Similarity=0.447 Sum_probs=197.9
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
+.|+++||+++|++. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999632 35799999999999999999999999999999999999999999999998 4
Q ss_pred ceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 048639 964 IGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP 1043 (1139)
Q Consensus 964 i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p 1043 (1139)
++||||+|.+|++|++||+.++.. ..+.+..++++.+++.+++..+|.+.++.+++.+.+||||||||++|||||+++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998743 3455667788889999999999999999999999999999999999999999999
Q ss_pred CEEEeeccccCCCHHHHHHHHHHH-HhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhc
Q 048639 1044 AIMLLDEATSALDAESERVIVSAL-EALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAE 1122 (1139)
Q Consensus 1044 ~ILlLDEaTS~LD~~te~~I~~~l-~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~ 1122 (1139)
++||||||||+||+.+++.+.+.+ ++.. +++|+|+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~----------~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLM----------ANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCT----------TTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhh----------CCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999974 4332 24569999999999888999999999999999999999875
Q ss_pred cCChHHHHH
Q 048639 1123 SQGVYSRLY 1131 (1139)
Q Consensus 1123 ~~g~f~~l~ 1131 (1139)
.+.|.+++
T Consensus 220 -~~~~~~~~ 227 (229)
T 2pze_A 220 -QPDFSSKL 227 (229)
T ss_dssp ---CHHHHH
T ss_pred -ChHHHHHh
Confidence 46676654
No 39
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=8.5e-48 Score=414.33 Aligned_cols=221 Identities=27% Similarity=0.416 Sum_probs=194.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
+.|+++|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 369999999999632 35799999999999999999999999999999999999999999999998 5
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 335 IGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 335 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
|+|+||+|++|+.|++||+.++.. .......+.++..++.+++..+|.++++.+++++.+||||||||++|||||+++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999753 2334445556666777888999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHH-HHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHH
Q 048639 415 PILLLDEATSALDSESEKLVQEAL-ERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRL 490 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 490 (1139)
++||||||||+||+.+++.+.+.+ ..+.+++|+|++||+++.+..||++++|++|++++.|+++++.+..+.|.+.
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 226 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSK 226 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHHH
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHHH
Confidence 999999999999999999999864 4545689999999999988779999999999999999999997765555444
No 40
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=6.7e-48 Score=417.02 Aligned_cols=225 Identities=32% Similarity=0.523 Sum_probs=199.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 48999999999632 35699999999999999999999999999999999999999999999998 49
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC
Q 048639 336 GAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP 415 (1139)
Q Consensus 336 ~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~ 415 (1139)
+||||+|++++.|++|||.++... ..+...++.+..++.+.+..+|.|+++.+++++.+||||||||++|||||+++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999997532 2233444555555566778889999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHH---HHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHh
Q 048639 416 ILLLDEATSALDSESEKLVQEALE---RAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFT 492 (1139)
Q Consensus 416 illlDEpts~LD~~~~~~i~~~l~---~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 492 (1139)
+||||||||+||+.++..+.+.+. .+.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+..+.|..++.
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 227 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLR 227 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHHHHHH
Confidence 999999999999999999999884 34458999999999999878999999999999999999999888888888876
Q ss_pred hcc
Q 048639 493 MQN 495 (1139)
Q Consensus 493 ~~~ 495 (1139)
.|.
T Consensus 228 ~~~ 230 (237)
T 2cbz_A 228 TYA 230 (237)
T ss_dssp HTC
T ss_pred HHH
Confidence 553
No 41
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=4.5e-47 Score=469.35 Aligned_cols=212 Identities=23% Similarity=0.367 Sum_probs=156.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHh-ccc----c---CCcc-------------
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLL-RFY----D---PNEG------------- 943 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~-rl~----~---p~~G------------- 943 (1139)
.|+++|++. .+|+||||+|++||.+||+|+||||||||+++++ +.. . +..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 589999862 2699999999999999999999999999999864 221 1 1223
Q ss_pred EEEECCcccCCCCh---H-------HHh---------hhceEEcccccc---------------------c---------
Q 048639 944 IILIDGKGIKEYNL---R-------RLR---------SQIGLVQQEPLL---------------------F--------- 974 (1139)
Q Consensus 944 ~I~idG~di~~~~l---~-------~lR---------~~i~~V~Qdp~L---------------------F--------- 974 (1139)
.|.+||.++..-+. . ..| +.+||+||...+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 48899988753221 1 122 346888885321 0
Q ss_pred -------------------------cccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccc-cccCCCCCCChH
Q 048639 975 -------------------------SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDT-VVGEKGCQLSGG 1028 (1139)
Q Consensus 975 -------------------------~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt-~v~e~G~~LSgG 1028 (1139)
..|+.+|+.++......++..++++.++| +. ..+.....||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~gL-----------~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGL-----------GYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHTTC-----------SSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHcCC-----------CcccccCchhhCCHH
Confidence 12445555543211111233445555544 32 344556789999
Q ss_pred HHHHHHHHHHhcCCC---CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEE
Q 048639 1029 QKQRIAIARTLLKRP---AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVM 1105 (1139)
Q Consensus 1029 QrQrlalARALlr~p---~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl 1105 (1139)
||||++|||||+++| +||||||||++||+.+.+.+.+.|+++. ..++|||+|+|+++.+..||||++|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~---------~~G~TVIvisHdl~~i~~aDrIivL 920 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV---------DNGDTVLVIEHNLDVIKTADYIIDL 920 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHH---------HTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---------hCCCEEEEEcCCHHHHHhCCEEEEE
Confidence 999999999999875 9999999999999999999999998764 3345699999999999889999999
Q ss_pred ------eCCEEEEecChhHHhhccC
Q 048639 1106 ------DKGEVVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1106 ------~~G~ive~G~~~eLl~~~~ 1124 (1139)
++|+|++.|+|+++.+.+.
T Consensus 921 ~p~gG~~~G~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 921 GPEGGDRGGQIVAVGTPEEVAEVKE 945 (972)
T ss_dssp CSSSTTSCCSEEEEESHHHHHTCTT
T ss_pred cCCCCCCCCEEEEecCHHHHHhCch
Confidence 7899999999999997643
No 42
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.1e-47 Score=433.54 Aligned_cols=228 Identities=31% Similarity=0.475 Sum_probs=197.0
Q ss_pred ccEEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH---
Q 048639 884 GRIEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR--- 959 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~--- 959 (1139)
.-|+++||+++|+... ..++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+..++.+.
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4699999999996432 246999999999999999999999999999999999999999999999999999988765
Q ss_pred HhhhceEEccccccccc-cHHHHhccCCC--cC----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHH
Q 048639 960 LRSQIGLVQQEPLLFSC-SIRNNICYGNE--AA----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQR 1032 (1139)
Q Consensus 960 lR~~i~~V~Qdp~LF~g-TIreNL~~~~~--~~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1032 (1139)
+|++||||||+|.+|.. |++||+.++.. .. .++++.++++.++|.++..+.| .+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----------~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT-----------TTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 47889999999998865 99999986421 11 2346788899999877654433 5799999999
Q ss_pred HHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEE
Q 048639 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVV 1111 (1139)
Q Consensus 1033 lalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~iv 1111 (1139)
++|||||+.+|+|||||||||+||+.+.+.|.+.|++... ..++|||+|||+++.+.. ||||+||++|+|+
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~--------~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv 243 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINR--------RLGLTILLITHEMDVVKRICDCVAVISNGELI 243 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--------HSCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH--------hCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999987641 224569999999999986 9999999999999
Q ss_pred EecChhHHhhccCChHHHH
Q 048639 1112 EMGSHSTLVAESQGVYSRL 1130 (1139)
Q Consensus 1112 e~G~~~eLl~~~~g~f~~l 1130 (1139)
+.|++++++.++...|.+-
T Consensus 244 ~~g~~~ev~~~p~~~~~~~ 262 (366)
T 3tui_C 244 EQDTVSEVFSHPKTPLAQK 262 (366)
T ss_dssp ECCBHHHHHSSCCSHHHHH
T ss_pred EEcCHHHHHhCCCcHHHHH
Confidence 9999999998777666443
No 43
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=5.8e-47 Score=416.62 Aligned_cols=223 Identities=27% Similarity=0.467 Sum_probs=189.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCC--CCHHHHhc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD--LDLKSLRK 333 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~~~ 333 (1139)
.|+++|++|+|++. .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 58999999999642 359999999999999999999999999999999999999999999999999842 33456788
Q ss_pred ceEEEecCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 334 NIGAVSQEP--SLFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 334 ~i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
+||||||+| .+|..||+||+.++.. ....++..+. +.+.++.+ |++......+.+||||||||++||||
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~iAra 157 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 157 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHH-----HHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhcCCcccCCHHHHHHHHHHHH
Confidence 999999998 4778899999998632 2233333222 22345555 55566678889999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-C-CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccchH
Q 048639 410 IVKNPPILLLDEATSALDSESEKLVQEALERAM-Q-GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTSDF 486 (1139)
Q Consensus 410 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 486 (1139)
|+.+|++||||||||+||+.++..+.+.|+++. + |+|+|+|||+++.+.. ||+|++|++|+++++|++++++.....
T Consensus 158 L~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~~~ 237 (275)
T 3gfo_A 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEV 237 (275)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCHHH
Confidence 999999999999999999999999999998875 3 8999999999999976 999999999999999999999765443
Q ss_pred H
Q 048639 487 Y 487 (1139)
Q Consensus 487 ~ 487 (1139)
+
T Consensus 238 ~ 238 (275)
T 3gfo_A 238 I 238 (275)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=4.6e-47 Score=428.54 Aligned_cols=222 Identities=30% Similarity=0.503 Sum_probs=190.3
Q ss_pred ccEEEEeEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH---
Q 048639 255 GNIDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS--- 330 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~-~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~--- 330 (1139)
..|+++|++++|++.. ..++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4699999999996432 246999999999999999999999999999999999999999999999999999887654
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHH
Q 048639 331 LRKNIGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 331 ~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lA 407 (1139)
+|++||||||++.+|+. ||+||+.++.. ....++..+. +.+.++.+ |+.......+.+||||||||++||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~-----v~~lL~~v--gL~~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR-----VTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHH-----HHHHHHHH--TCGGGTTCCTTTSCHHHHHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCchHhcCChhhCCHHHHHHHHHH
Confidence 47889999999999875 99999998631 1223322221 22334444 455566788899999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 408 RAIVKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 408 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|||+.+|++||||||||+||+.++..+.+.|+++. .|+|+|+|||+++.+.. ||||++|++|++++.|++++++..
T Consensus 176 rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~ 254 (366)
T 3tui_C 176 RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSH 254 (366)
T ss_dssp HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSS
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999999874 38999999999999876 999999999999999999999864
No 45
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.6e-47 Score=411.86 Aligned_cols=217 Identities=30% Similarity=0.513 Sum_probs=181.2
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH----
Q 048639 257 IDIRDVCFAYPSRP-DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL---- 331 (1139)
Q Consensus 257 i~~~~v~~~y~~~~-~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~---- 331 (1139)
|+++|++|+|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2469999999999999999999999999999999999999999999999999998887653
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCC-----CCCHHHHHHHHHHhcHHHHHHhCCCCCCcc-ccccCCCCChHHHHHH
Q 048639 332 RKNIGAVSQEPSLFTG-SLMDNIKVGNM-----DADDEQIYNASMMANAHSFISQLPDQYSTE-LGQRGVQLSGGQKQRI 404 (1139)
Q Consensus 332 ~~~i~~v~Q~~~l~~~-ti~~ni~~g~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-i~~~g~~LSgGqkqRi 404 (1139)
|++||||||+|.+|+. ||+||+.++.. ....++..+ .+.+.++.+ |+... ....+.+||||||||+
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGq~QRv 154 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRK-----RALECLKMA--ELEERFANHKPNQLSGGQQQRV 154 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHH-----HHHHHHHHT--TCCGGGTTCCGGGSCHHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHH-----HHHHHHHHC--CCChhhhhCChhhCCHHHHHHH
Confidence 4579999999999986 99999987421 122222211 122334444 34333 3678899999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhccCEEEEEeCcEEEEecChhhh
Q 048639 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 405 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 480 (1139)
+|||||+.+|++||||||||+||+.++..+.+.++++.+ |+|+|+|||+++.+..||+|++|++|++++.++.+++
T Consensus 155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 999999999999999999999999999999999988743 8999999999997767999999999999999987765
No 46
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.9e-47 Score=417.95 Aligned_cols=217 Identities=29% Similarity=0.479 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccC--CCChHHHhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK--EYNLRRLRS 962 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~--~~~l~~lR~ 962 (1139)
.|+++||+++|++. .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 49999999999642 35999999999999999999999999999999999999999999999999994 344567899
Q ss_pred hceEEcccc--ccccccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHH
Q 048639 963 QIGLVQQEP--LLFSCSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034 (1139)
Q Consensus 963 ~i~~V~Qdp--~LF~gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 1034 (1139)
++|||||+| .+|..|+++|+.++.. ..+ ++++.++++.+++.++..+ ...+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDK-----------PTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------CcccCCHHHHHHHH
Confidence 999999998 5788999999986521 122 3457788888888765432 23579999999999
Q ss_pred HHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEe
Q 048639 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1035 lARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1113 (1139)
|||||+.+|+|||||||||+||+.+.+.+.+.|+++. . ..++|||+|||+++.+.. ||||++|++|++++.
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~-------~-~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~ 225 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ-------K-ELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQ 225 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH-------H-HHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEE
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHH-------h-hCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999998753 0 114569999999999976 999999999999999
Q ss_pred cChhHHhhc
Q 048639 1114 GSHSTLVAE 1122 (1139)
Q Consensus 1114 G~~~eLl~~ 1122 (1139)
|+|++++++
T Consensus 226 g~~~~~~~~ 234 (275)
T 3gfo_A 226 GNPKEVFAE 234 (275)
T ss_dssp ECHHHHTHH
T ss_pred CCHHHHhcC
Confidence 999999865
No 47
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=3.6e-47 Score=410.82 Aligned_cols=217 Identities=31% Similarity=0.440 Sum_probs=182.3
Q ss_pred EEEEeEEEECCCCC-CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHH----
Q 048639 886 IEFQNIKFNYPSRP-EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL---- 960 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~-~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l---- 960 (1139)
|+++||+++|+.++ ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++..++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 2469999999999999999999999999999999999999999999999999999987764
Q ss_pred hhhceEEccccccccc-cHHHHhccCC-----CcCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 961 RSQIGLVQQEPLLFSC-SIRNNICYGN-----EAAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 961 R~~i~~V~Qdp~LF~g-TIreNL~~~~-----~~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
|++++||||+|.+|.. |++||+.++. .... .+++.++++.+++.+... .....+||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~----------~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFA----------NHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGT----------TCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhh----------hCChhhCCHHHH
Confidence 4579999999999986 9999997531 1112 345677788888755321 223457999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEE
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEV 1110 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~i 1110 (1139)
||++|||||+.+|+|||||||||+||+.+.+.+.+.|++... ..++|||+|||+++....||||++|++|+|
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--------~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i 223 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE--------EDGKTVVVVTHDINVARFGERIIYLKDGEV 223 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--------HHCCEEEEECSCHHHHTTSSEEEEEETTEE
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------HcCCEEEEEcCCHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999987640 214569999999997777999999999999
Q ss_pred EEecChhHHh
Q 048639 1111 VEMGSHSTLV 1120 (1139)
Q Consensus 1111 ve~G~~~eLl 1120 (1139)
++.|+++++.
T Consensus 224 ~~~~~~~~~~ 233 (235)
T 3tif_A 224 EREEKLRGFD 233 (235)
T ss_dssp EEEEECC---
T ss_pred EEEcChhhhc
Confidence 9999988764
No 48
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.5e-46 Score=409.25 Aligned_cols=220 Identities=35% Similarity=0.514 Sum_probs=190.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccC--CCChHHHhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK--EYNLRRLRS 962 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~--~~~l~~lR~ 962 (1139)
.|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999953 46999999999999999999999999999999999999999999999999985 345567889
Q ss_pred hceEEccccccccc-cHHHHhccCC---CcCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHH
Q 048639 963 QIGLVQQEPLLFSC-SIRNNICYGN---EAAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~g-TIreNL~~~~---~~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrla 1034 (1139)
+++||||++.+|.. |++||+.++. ...+ ++++.++++.+++.++..+ ...+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA-----------YPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-----------CGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcC-----------ChhhCCHHHHHHHH
Confidence 99999999999876 9999998741 1112 3467888899888765433 23579999999999
Q ss_pred HHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEe
Q 048639 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1035 lARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1113 (1139)
|||||+.+|++||||||||+||+.+.+.+.+.|++.. ++++|||+|||+++.+.. ||||++|++|++++.
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~---------~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~ 240 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA---------NEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEE 240 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH---------HTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH---------hCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999998764 234569999999999875 999999999999999
Q ss_pred cChhHHhhccCChH
Q 048639 1114 GSHSTLVAESQGVY 1127 (1139)
Q Consensus 1114 G~~~eLl~~~~g~f 1127 (1139)
|+++++++++...+
T Consensus 241 g~~~~~~~~~~~~~ 254 (263)
T 2olj_A 241 GKPEDLFDRPQHER 254 (263)
T ss_dssp ECHHHHHHSCCSHH
T ss_pred CCHHHHHhCcccHH
Confidence 99999987644444
No 49
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.9e-46 Score=405.39 Aligned_cols=219 Identities=27% Similarity=0.477 Sum_probs=187.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH-hcc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL-RKN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~-~~~ 334 (1139)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+ +++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999987776654 556
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGN-MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
|+||||++.+|+. |++||+.++. +....++..+. +.+.++.++ |++...++++.+||||||||++|||||+.
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD-----LEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHH-----HHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHH-----HHHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999987 9999999864 21111222221 223455553 34455678889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999998875 58999999999988765 999999999999999999998653
No 50
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=1.9e-45 Score=456.77 Aligned_cols=213 Identities=23% Similarity=0.338 Sum_probs=153.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHh-c----ccc---CCcc-------------
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLL-R----FYD---PNEG------------- 943 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~-r----l~~---p~~G------------- 943 (1139)
.++++|++. .+|+||||+|++||++||+|+||||||||+++|+ + .+. +..|
T Consensus 647 ~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 647 QLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp EEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred eEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 589999852 2699999999999999999999999999999854 2 221 1234
Q ss_pred EEEECCcccCCCC---hH-------HHh---------hhceEEcccccc---------------------c---------
Q 048639 944 IILIDGKGIKEYN---LR-------RLR---------SQIGLVQQEPLL---------------------F--------- 974 (1139)
Q Consensus 944 ~I~idG~di~~~~---l~-------~lR---------~~i~~V~Qdp~L---------------------F--------- 974 (1139)
.|.+|+.++..-+ +. .+| +..+|+||...+ |
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 3566766664221 11 122 346777775321 0
Q ss_pred -------------------------cccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH
Q 048639 975 -------------------------SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029 (1139)
Q Consensus 975 -------------------------~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1029 (1139)
..|+.+|+.++......++..++++.++|... ..+.....|||||
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~lgL~~~----------~l~~~~~~LSGGe 868 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIAGVHRYLRTLVDVGLGYV----------RLGQPAPTLSGGE 868 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCHHHHHHHHHHHHTTGGGS----------BTTCCGGGSCHHH
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcchHHHHHHHHHHHcCCCcc----------cccCccccCCHHH
Confidence 11334444433211111233445555554320 3455567899999
Q ss_pred HHHHHHHHHhcCCC---CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEE-
Q 048639 1030 KQRIAIARTLLKRP---AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVM- 1105 (1139)
Q Consensus 1030 rQrlalARALlr~p---~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl- 1105 (1139)
|||++|||||+++| +||||||||++||+.+.+.+.+.|+++. ..++|||+|+|+++.+..||||++|
T Consensus 869 kQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~---------~~G~TVIvisHdl~~i~~aDrIivL~ 939 (993)
T 2ygr_A 869 AQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLV---------DKGNTVIVIEHNLDVIKTSDWIIDLG 939 (993)
T ss_dssp HHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHH---------HTTCEEEEECCCHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---------hCCCEEEEEcCCHHHHHhCCEEEEEC
Confidence 99999999999875 9999999999999999999999998764 2345699999999999889999999
Q ss_pred -----eCCEEEEecChhHHhhccC
Q 048639 1106 -----DKGEVVEMGSHSTLVAESQ 1124 (1139)
Q Consensus 1106 -----~~G~ive~G~~~eLl~~~~ 1124 (1139)
++|+|++.|+|+++.+.+.
T Consensus 940 p~gg~~~G~Iv~~G~~~el~~~~~ 963 (993)
T 2ygr_A 940 PEGGAGGGTVVAQGTPEDVAAVPA 963 (993)
T ss_dssp SSSTTSCSEEEEEECHHHHHHCTT
T ss_pred CCcCCCCCEEEEecCHHHHHhCCH
Confidence 6899999999999987643
No 51
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.2e-46 Score=404.12 Aligned_cols=215 Identities=23% Similarity=0.422 Sum_probs=183.1
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHH-hhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRL-RSQ 963 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~l-R~~ 963 (1139)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999953 469999999999999999999999999999999999999999999999999988877665 456
Q ss_pred ceEEccccccccc-cHHHHhccCC-CcCC----HHHHHHHHHHcC-chHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 964 IGLVQQEPLLFSC-SIRNNICYGN-EAAS----EAEIVEVSKKAN-IHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 964 i~~V~Qdp~LF~g-TIreNL~~~~-~~~s----d~ei~~al~~~~-l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
++||||+|.+|.+ |++||+.++. +..+ ++.+.++++..+ +.+ ..+....+||||||||++||
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~-----------~~~~~~~~LSgGq~qrv~lA 151 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE-----------RLKQLGGTLSGGEQQMLAIG 151 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHT-----------TTTSBSSSSCHHHHHHHHHH
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhh-----------HhcCChhhCCHHHHHHHHHH
Confidence 9999999999987 9999998753 1111 233445555552 433 23444568999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecC
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1115 (1139)
|||+++|+|||||||||+||+.+.+.+.+.|++.. ++++|+|+|||+++.+.. ||||++|++|++++.|+
T Consensus 152 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~---------~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 222 (240)
T 1ji0_A 152 RALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN---------QEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGK 222 (240)
T ss_dssp HHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH---------HTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH---------HCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999998764 234459999999988765 99999999999999999
Q ss_pred hhHHhhc
Q 048639 1116 HSTLVAE 1122 (1139)
Q Consensus 1116 ~~eLl~~ 1122 (1139)
+++++++
T Consensus 223 ~~~~~~~ 229 (240)
T 1ji0_A 223 ASELLDN 229 (240)
T ss_dssp HHHHHTC
T ss_pred HHHHhcC
Confidence 9999853
No 52
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=5.3e-46 Score=408.25 Aligned_cols=216 Identities=26% Similarity=0.435 Sum_probs=191.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|. +.++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.+.+++++
T Consensus 11 ~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 599999999995 34699999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcccccc-ccccHHHHhccCCC----cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 048639 965 GLVQQEPLL-FSCSIRNNICYGNE----AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTL 1039 (1139)
Q Consensus 965 ~~V~Qdp~L-F~gTIreNL~~~~~----~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARAL 1039 (1139)
+|++|++.+ |..|++||+.++.. ...++++.++++.+++.++.++ . ..+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-------D----YRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS-------B----GGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC-------C----cccCCHHHHHHHHHHHHH
Confidence 999999976 67899999987532 2235678889999988654322 2 347999999999999999
Q ss_pred cC------CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1040 LK------RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1040 lr------~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
++ +|++||||||||+||+.+.+.+.+.|+++. ..+++|+|+|||+++.+.. ||||++|++|++++
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~--------~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~ 228 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLT--------RQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVA 228 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHH--------HHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHH--------HcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE
Confidence 99 999999999999999999999999998764 1234579999999999875 99999999999999
Q ss_pred ecChhHHhhc
Q 048639 1113 MGSHSTLVAE 1122 (1139)
Q Consensus 1113 ~G~~~eLl~~ 1122 (1139)
.|+++++++.
T Consensus 229 ~g~~~~~~~~ 238 (266)
T 4g1u_C 229 CGTPEEVLNA 238 (266)
T ss_dssp EECHHHHCCH
T ss_pred EcCHHHHhCc
Confidence 9999999854
No 53
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=7.1e-46 Score=419.10 Aligned_cols=225 Identities=31% Similarity=0.502 Sum_probs=192.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC--CChHHHhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE--YNLRRLRS 962 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~--~~l~~lR~ 962 (1139)
.|+++||+++|. +.++|+||||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.|+.. .+....|+
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 489999999995 3469999999999999999999999999999999999999999999999999832 22334578
Q ss_pred hceEEcccccccc-ccHHHHhccCCCc------CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHH
Q 048639 963 QIGLVQQEPLLFS-CSIRNNICYGNEA------ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI 1035 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~-gTIreNL~~~~~~------~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlal 1035 (1139)
+||||+|++.+|. .|++||+.++... ..++++.++++.+++.++.++.| .+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHH
Confidence 8999999999996 4999999986321 12356888999999887655443 4799999999999
Q ss_pred HHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEec
Q 048639 1036 ARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1036 ARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1114 (1139)
||||+.+|++||||||||+||+.+...+++.|++.. . ..++|+|+|||+++.+.. ||||+||++|+|++.|
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~-------~-~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g 221 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAAL-------R-ANGKSAVFVSHDREEALQYADRIAVMKQGRILQTA 221 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH-------H-HTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH-------H-hCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999998776543 0 234569999999999876 9999999999999999
Q ss_pred ChhHHhhccCChHHHHH
Q 048639 1115 SHSTLVAESQGVYSRLY 1131 (1139)
Q Consensus 1115 ~~~eLl~~~~g~f~~l~ 1131 (1139)
+|+++++++...|...+
T Consensus 222 ~~~el~~~p~~~~~a~~ 238 (359)
T 3fvq_A 222 SPHELYRQPADLDAALF 238 (359)
T ss_dssp CHHHHHHSCSCHHHHHH
T ss_pred CHHHHHhCcccHHHHHh
Confidence 99999988777665443
No 54
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=5.1e-46 Score=422.95 Aligned_cols=222 Identities=30% Similarity=0.464 Sum_probs=193.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|+ +.++|+||||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+.. +++|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 489999999995 34699999999999999999999999999999999999999999999999999987765 4779
Q ss_pred eEEccccccccc-cHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+||+|++.||.. |++|||.++.. ..+ ++++.++++.+++.++.++.| .+||||||||++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----------~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hHCCHHHHHHHHHHH
Confidence 999999999965 99999987521 122 356788899999877654433 579999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+++|+|||||||||+||+.+...+++.|+++.. ..++|+|+|||+++.+.. ||||+||++|+|++.|+|
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~--------~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~ 218 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK--------RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKP 218 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--------HHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH--------hCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCH
Confidence 99999999999999999999999999999987640 224569999999999876 999999999999999999
Q ss_pred hHHhhccCChHHHH
Q 048639 1117 STLVAESQGVYSRL 1130 (1139)
Q Consensus 1117 ~eLl~~~~g~f~~l 1130 (1139)
+++++++...|...
T Consensus 219 ~~l~~~p~~~~v~~ 232 (381)
T 3rlf_A 219 LELYHYPADRFVAG 232 (381)
T ss_dssp HHHHHCCSBHHHHH
T ss_pred HHHHhCCccHHHHH
Confidence 99998877776543
No 55
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=9.1e-46 Score=406.39 Aligned_cols=218 Identities=26% Similarity=0.406 Sum_probs=187.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|++++|++ +++|+||||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.+.+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5999999999963 4699999999999999999999999999999999999999999999999999999988888999
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc--
Q 048639 336 GAVSQEPSL-FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK-- 412 (1139)
Q Consensus 336 ~~v~Q~~~l-~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~-- 412 (1139)
+|++|++.+ ++.||+||+.++.......+..+ .+.+.++.+ |+.......+.+||||||||++|||||+.
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~ 160 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQ-----ALQQVMAQT--DCLALAQRDYRVLSGGEQQRVQLARVLAQLW 160 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHH-----HHHHHHHHT--TCSTTTTSBGGGCCHHHHHHHHHHHHHHHTC
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHH-----HHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence 999999987 56799999998753221111111 112334444 44445566778999999999999999999
Q ss_pred ----CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 413 ----NPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 413 ----~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 161 ~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 238 (266)
T 4g1u_C 161 QPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA 238 (266)
T ss_dssp CSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH
T ss_pred ccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc
Confidence 9999999999999999999999999988743 5799999999999875 999999999999999999998754
No 56
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.8e-45 Score=402.52 Aligned_cols=218 Identities=32% Similarity=0.513 Sum_probs=186.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCC--CCCHHHHhc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK--DLDLKSLRK 333 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~~ 333 (1139)
.|+++|++++|++ +++|+||||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 5999999999963 46999999999999999999999999999999999999999999999999985 334556788
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 334 NIGAVSQEPSLFTG-SLMDNIKVGN---MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~~-ti~~ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
+|+||||++.+|+. |++||+.++. .....++.. ..+.+.++.+ |+.......+.+||||||||++||||
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~lAra 173 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE-----AKAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARA 173 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHH-----HHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHH
Confidence 89999999999876 9999998852 112222211 1223455555 55556677888999999999999999
Q ss_pred HccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 410 IVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 410 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 174 L~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 174 LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999998874 48999999999999875 999999999999999999998653
No 57
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-45 Score=405.42 Aligned_cols=220 Identities=28% Similarity=0.438 Sum_probs=189.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC----------
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE---------- 954 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~---------- 954 (1139)
.|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4999999999952 469999999999999999999999999999999999999999999999999862
Q ss_pred CCh---HHHhhhceEEccccccccc-cHHHHhccCC---CcCC----HHHHHHHHHHcCchHH-HhhCCCCccccccCCC
Q 048639 955 YNL---RRLRSQIGLVQQEPLLFSC-SIRNNICYGN---EAAS----EAEIVEVSKKANIHDF-ISSLPDGYDTVVGEKG 1022 (1139)
Q Consensus 955 ~~l---~~lR~~i~~V~Qdp~LF~g-TIreNL~~~~---~~~s----d~ei~~al~~~~l~~~-i~~lp~gldt~v~e~G 1022 (1139)
++. ..+|++++||||++.+|.. |++||+.++. ...+ ++++.++++.+++.++ ..+. .
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-----------P 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-----------G
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC-----------c
Confidence 443 3568899999999998876 9999998731 1112 3567888999998876 4432 3
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCE
Q 048639 1023 CQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDV 1101 (1139)
Q Consensus 1023 ~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~Dr 1101 (1139)
.+||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|++.. .+++|||+|||+++.+.. |||
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~---------~~g~tvi~vtHd~~~~~~~~d~ 222 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA---------EEGKTMVVVTHEMGFARHVSSH 222 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH---------HTTCCEEEECSCHHHHHHHCSE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH---------hCCCEEEEEeCCHHHHHHhCCE
Confidence 5799999999999999999999999999999999999999999998764 224569999999999875 999
Q ss_pred EEEEeCCEEEEecChhHHhhccCChH
Q 048639 1102 IVVMDKGEVVEMGSHSTLVAESQGVY 1127 (1139)
Q Consensus 1102 I~vl~~G~ive~G~~~eLl~~~~g~f 1127 (1139)
|++|++|++++.|+++++++++...+
T Consensus 223 v~~l~~G~i~~~g~~~~~~~~~~~~~ 248 (262)
T 1b0u_A 223 VIFLHQGKIEEEGDPEQVFGNPQSPR 248 (262)
T ss_dssp EEEEETTEEEEEECHHHHHHSCCSHH
T ss_pred EEEEECCEEEEeCCHHHHHhCcchHH
Confidence 99999999999999999987644444
No 58
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=7.9e-46 Score=418.69 Aligned_cols=219 Identities=29% Similarity=0.514 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCC--CCHHHHhc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD--LDLKSLRK 333 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~--~~~~~~~~ 333 (1139)
.|+++|++++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+ ......++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999832 22234567
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 334 NIGAVSQEPSLFTG-SLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
+||||||++.+|+. ||+|||.|+... ...++..+. +.+.++.+ |++......+.+|||||||||+|||||
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~-----v~~~l~~~--gL~~~~~r~~~~LSGGq~QRValArAL 153 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR-----IEAMLELT--GISELAGRYPHELSGGQQQRAALARAL 153 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHH-----HHHHHHHH--TCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHH-----HHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 89999999999975 999999998532 112222111 12233333 455566778899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
+.+|++||||||||+||+.++..+.+.+.++. .|+|+|+|||+++.+.. ||||++|++|+|++.|+++++....
T Consensus 154 ~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 154 APDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 99999999999999999999999988776643 48999999999999865 9999999999999999999997653
No 59
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-45 Score=402.98 Aligned_cols=215 Identities=25% Similarity=0.410 Sum_probs=188.8
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
+.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. ....+|++
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 5699999999995 3469999999999999999999999999999999999999999999999999976 55678899
Q ss_pred ceEEccccccccc-cHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 964 IGLVQQEPLLFSC-SIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 964 i~~V~Qdp~LF~g-TIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
++||||+|.+|.+ |++||+.++.. ..+ ++++.++++.+++.++..+ ...+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-----------RVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS-----------BGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcC-----------ChhhCCHHHHHHHHHH
Confidence 9999999998876 99999986421 112 2467788888888766433 2357999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecC
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1115 (1139)
|||+++|+|||||||||+||+.+.+.+.+.|++.. ++++|||++||+++.+.. ||+|++|++|++++.|+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~---------~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 229 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS---------QEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGT 229 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH---------HTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEE
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHH---------hCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999764 234569999999999987 99999999999999999
Q ss_pred hhHHhhc
Q 048639 1116 HSTLVAE 1122 (1139)
Q Consensus 1116 ~~eLl~~ 1122 (1139)
++++.+.
T Consensus 230 ~~~~~~~ 236 (256)
T 1vpl_A 230 VEELKER 236 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999753
No 60
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.8e-45 Score=418.39 Aligned_cols=216 Identities=31% Similarity=0.526 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ .++|+||||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++. +++|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999887765 4679
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
|||+|++.||+. ||+|||.|+.. ....++..+ .+.+.++.+ |++......+.+|||||||||+|||||+.
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~p~~LSGGqrQRVaiArAL~~ 150 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHH-----HHHHHHHHT--TCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence 999999999975 99999998632 122332222 223445555 55566778889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+|++||||||||+||+..+..+.+.|+++.+ |.|+|+|||+++.+.. ||||++|++|+|++.|+++++...
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~ 224 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhC
Confidence 9999999999999999999999999988743 8999999999999865 999999999999999999999764
No 61
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.2e-45 Score=401.40 Aligned_cols=219 Identities=21% Similarity=0.399 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHH-HHhcc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK-SLRKN 334 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~-~~~~~ 334 (1139)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .++++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999876643 45778
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCC--CCHHH--------HHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHH
Q 048639 335 IGAVSQEPSLFT-GSLMDNIKVGNMD--ADDEQ--------IYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQR 403 (1139)
Q Consensus 335 i~~v~Q~~~l~~-~ti~~ni~~g~~~--~~~~~--------~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqR 403 (1139)
|+||||++.+|. .|++||+.++... ..... .........+.+.++.+ |++....+.+.+||||||||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkQr 161 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL--KLSHLYDRKAGELSGGQMKL 161 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHc--CCchhhCCCchhCCHHHHHH
Confidence 999999999886 5999999986421 11000 00001112234566666 66677788899999999999
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhh
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHS 479 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 479 (1139)
++|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999999999999998874 48999999999999865 99999999999999999998
No 62
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=3.8e-45 Score=402.61 Aligned_cols=215 Identities=29% Similarity=0.495 Sum_probs=188.3
Q ss_pred EEEEeEEEECCCCCC--cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 886 IEFQNIKFNYPSRPE--VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~--~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
|+++||+++|+.... .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 4699999999999999999999999999999999999999999999999998752 67889
Q ss_pred ceEEcccc--ccccccHHHHhccCCC-----cCCHHHHHHHHHHcCch--HHHhhCCCCccccccCCCCCCChHHHHHHH
Q 048639 964 IGLVQQEP--LLFSCSIRNNICYGNE-----AASEAEIVEVSKKANIH--DFISSLPDGYDTVVGEKGCQLSGGQKQRIA 1034 (1139)
Q Consensus 964 i~~V~Qdp--~LF~gTIreNL~~~~~-----~~sd~ei~~al~~~~l~--~~i~~lp~gldt~v~e~G~~LSgGQrQrla 1034 (1139)
++||||+| .++..|++||+.++.. ...++++.++++.+++. ++..+.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999997 5678899999987531 12356789999999998 7755443 479999999999
Q ss_pred HHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEe
Q 048639 1035 IARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1035 lARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~ 1113 (1139)
|||||+++|+|||||||||+||+.+.+.+.+.|++.. ++++|||+|||+++.+.. ||||++|++|++++.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~---------~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~ 219 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK---------TLGKTVILISHDIETVINHVDRVVVLEKGKKVFD 219 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH---------HTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEE
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHH---------HcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999998764 234569999999999986 999999999999999
Q ss_pred cChhHHhhcc
Q 048639 1114 GSHSTLVAES 1123 (1139)
Q Consensus 1114 G~~~eLl~~~ 1123 (1139)
|+++++++++
T Consensus 220 g~~~~~~~~~ 229 (266)
T 2yz2_A 220 GTRMEFLEKY 229 (266)
T ss_dssp EEHHHHHHHS
T ss_pred CCHHHHhcCc
Confidence 9999998653
No 63
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=4.7e-45 Score=400.11 Aligned_cols=211 Identities=22% Similarity=0.385 Sum_probs=182.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChH-HHhhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR-RLRSQ 963 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~-~lR~~ 963 (1139)
.|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999953 4699999999999999999999999999999999999999999999999999877654 46788
Q ss_pred ceEEcccccccc-ccHHHHhccCCCc---------------CC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCC
Q 048639 964 IGLVQQEPLLFS-CSIRNNICYGNEA---------------AS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGC 1023 (1139)
Q Consensus 964 i~~V~Qdp~LF~-gTIreNL~~~~~~---------------~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~ 1023 (1139)
++||||+|.+|. .|++||+.++... .. .+++.++++..++.++. .....
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-----------DRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-----------TSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhh-----------CCCch
Confidence 999999998886 6999999875211 11 23567777777775543 23345
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEE
Q 048639 1024 QLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVI 1102 (1139)
Q Consensus 1024 ~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI 1102 (1139)
+||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|++.. .+++|||+|||+++.+.. ||||
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~---------~~g~tvi~vtHd~~~~~~~~d~v 223 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK---------AKGITFLIIEHRLDIVLNYIDHL 223 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH---------HTTCEEEEECSCCSTTGGGCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH---------HCCCEEEEEecCHHHHHHhCCEE
Confidence 799999999999999999999999999999999999999999999764 234569999999999875 9999
Q ss_pred EEEeCCEEEEecChhH
Q 048639 1103 VVMDKGEVVEMGSHST 1118 (1139)
Q Consensus 1103 ~vl~~G~ive~G~~~e 1118 (1139)
++|++|++++.|++++
T Consensus 224 ~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 224 YVMFNGQIIAEGRGEE 239 (257)
T ss_dssp EEEETTEEEEEEESHH
T ss_pred EEEECCEEEEEeCHHH
Confidence 9999999999999999
No 64
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=2.8e-45 Score=393.27 Aligned_cols=208 Identities=27% Similarity=0.395 Sum_probs=179.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH---Hh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR---LR 961 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~---lR 961 (1139)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999953 46999999999999999999999999999999999999999999999999998877653 44
Q ss_pred -hhceEEcccccccc-ccHHHHhccCCC------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 962 -SQIGLVQQEPLLFS-CSIRNNICYGNE------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 962 -~~i~~V~Qdp~LF~-gTIreNL~~~~~------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
++++||||+|.+|. .|++||+.++.. ...++++.++++.+++.++..+ ...+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSR-----------KPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTC-----------CGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHH
Confidence 78999999999886 599999976421 1123467788888887654332 2357999999999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEe
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~ 1113 (1139)
+|||||+.+|++||||||||+||+.+.+.+.+.|++.. ++++|||+|||+++.+..||+|++|++|++++.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~---------~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN---------EGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH---------HTTCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---------HCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999998764 234569999999998867999999999999999
Q ss_pred cC
Q 048639 1114 GS 1115 (1139)
Q Consensus 1114 G~ 1115 (1139)
|+
T Consensus 221 g~ 222 (224)
T 2pcj_A 221 IT 222 (224)
T ss_dssp EE
T ss_pred ee
Confidence 86
No 65
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.5e-45 Score=396.87 Aligned_cols=217 Identities=26% Similarity=0.433 Sum_probs=185.4
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
+.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....++++
T Consensus 14 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 46999999999963 469999999999999999999999999999999999999999999999999876 45667889
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
|+||||++.+++. |++||+.++.. ....++..+ .+.+.++.+ |++.....++.+||||||||++|||||+
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~ 162 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEE-----MVERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 162 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHH-----HHHHHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999998876 99999987521 112221111 122334444 4555567788899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
.+|++||||||||+||+.++..+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999998875 58999999999999876 99999999999999999998853
No 66
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.4e-45 Score=392.61 Aligned_cols=211 Identities=27% Similarity=0.448 Sum_probs=180.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH---Hh
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS---LR 332 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~---~~ 332 (1139)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998776543 33
Q ss_pred -cceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 333 -KNIGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 333 -~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
++|+||||++.+|+. |++||+.++.. ....++. ...+.+.++.+ |+.......+.+||||||||++|||
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEA-----KERGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHH-----HHHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHH-----HHHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 689999999998864 99999987521 1111111 11233455655 5555667788999999999999999
Q ss_pred HHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhccCEEEEEeCcEEEEecC
Q 048639 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGT 476 (1139)
Q Consensus 409 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 476 (1139)
||+.+|++||||||||+||+.++..+.+.++++. +|+|+|+|||+++.+..||+|++|++|+++++|+
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999998874 5899999999999886699999999999999886
No 67
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=6.7e-45 Score=412.99 Aligned_cols=220 Identities=30% Similarity=0.533 Sum_probs=192.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|. +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++..++.. ++++
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 389999999995 34699999999999999999999999999999999999999999999999999887653 6789
Q ss_pred eEEccccccccc-cHHHHhccCCCc--C----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNEA--A----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~~--~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+||||++.+|.. |++||+.++... . .++++.++++.+++.++.++.| .+||||||||+||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 999999986321 1 2356888999999987755543 479999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+++|++||||||||+||+.+.+.+++.|++... ..++|+|+|||+++.+.. ||||++|++|+|++.|+|
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~--------~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~ 218 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ--------ELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTP 218 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--------HHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999987640 224569999999999865 999999999999999999
Q ss_pred hHHhhccCChHH
Q 048639 1117 STLVAESQGVYS 1128 (1139)
Q Consensus 1117 ~eLl~~~~g~f~ 1128 (1139)
+++++++...|.
T Consensus 219 ~~l~~~p~~~~~ 230 (359)
T 2yyz_A 219 DEVYDSPKNMFV 230 (359)
T ss_dssp HHHHHSCSBHHH
T ss_pred HHHHhCcccHHH
Confidence 999987666554
No 68
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.3e-45 Score=415.04 Aligned_cols=220 Identities=35% Similarity=0.551 Sum_probs=190.9
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|.+ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++..++.. ++++
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999952 4699999999999999999999999999999999999999999999999999887754 5789
Q ss_pred eEEccccccccc-cHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+||||++.+|.. |++||+.++.. ..+ ++++.++++.+++.++.++.| .+||||||||+||||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalAr 146 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-----------WQLSGGQQQRVAIAR 146 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999975 99999987521 112 346788899998876654433 479999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+++|++||||||||+||+.+...+++.|++... ..++|+|+|||+++.+.. ||||++|++|+|++.|+|
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~--------~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~ 218 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK--------ELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTP 218 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHH--------HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH--------hCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999987640 224569999999999865 999999999999999999
Q ss_pred hHHhhccCChHH
Q 048639 1117 STLVAESQGVYS 1128 (1139)
Q Consensus 1117 ~eLl~~~~g~f~ 1128 (1139)
+++++++...|.
T Consensus 219 ~~~~~~p~~~~~ 230 (362)
T 2it1_A 219 DEVYYKPKYKFV 230 (362)
T ss_dssp HHHHHSCSBHHH
T ss_pred HHHHhCccchHH
Confidence 999987666554
No 69
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=7.1e-45 Score=399.15 Aligned_cols=218 Identities=29% Similarity=0.507 Sum_probs=185.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCC----------
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD---------- 325 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~---------- 325 (1139)
.|+++|++++|++ .++|+||||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4999999999963 469999999999999999999999999999999999999999999999999861
Q ss_pred CCH---HHHhcceEEEecCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCCCcc-ccccCCCCC
Q 048639 326 LDL---KSLRKNIGAVSQEPSLFTG-SLMDNIKVGN---MDADDEQIYNASMMANAHSFISQLPDQYSTE-LGQRGVQLS 397 (1139)
Q Consensus 326 ~~~---~~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-i~~~g~~LS 397 (1139)
.+. ..+|++|+||||++.+|+. |++||+.++. .....++.. ..+.+.++.+ |+... ....+.+||
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~L~~~~~~~~~~~LS 155 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDAR-----ERALKYLAKV--GIDERAQGKYPVHLS 155 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHH-----HHHHHHHHHT--TCCHHHHTSCGGGSC
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhcCCcccCC
Confidence 333 3457789999999999876 9999998852 112222111 1223455555 55555 677888999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEec
Q 048639 398 GGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETG 475 (1139)
Q Consensus 398 gGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g 475 (1139)
||||||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (262)
T 1b0u_A 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235 (262)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998874 48999999999999875 9999999999999999
Q ss_pred Chhhhhcc
Q 048639 476 THHSLLQT 483 (1139)
Q Consensus 476 ~~~~l~~~ 483 (1139)
+++++...
T Consensus 236 ~~~~~~~~ 243 (262)
T 1b0u_A 236 DPEQVFGN 243 (262)
T ss_dssp CHHHHHHS
T ss_pred CHHHHHhC
Confidence 99998653
No 70
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5.1e-45 Score=412.71 Aligned_cols=222 Identities=28% Similarity=0.529 Sum_probs=192.3
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
..|+++||+++|++ +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+. .|++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 36999999999942 2469999999999999999999999999999999999999999999999999987654 4788
Q ss_pred ceEEccccccccc-cHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 964 IGLVQQEPLLFSC-SIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 964 i~~V~Qdp~LF~g-TIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
++||||++.+|.. |++||+.++.. ..+ ++++.++++.+++.++.++.| .+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHHH
Confidence 9999999999975 99999987521 112 456888999999987655443 47999999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecC
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~ 1115 (1139)
|||+++|++||||||||+||+.+.+.+++.|++... ..++|+|+|||+++.+.. ||||++|++|+|++.|+
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~--------~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~ 229 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD--------EMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGT 229 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHH--------HHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999987640 124569999999999876 99999999999999999
Q ss_pred hhHHhhccCChHH
Q 048639 1116 HSTLVAESQGVYS 1128 (1139)
Q Consensus 1116 ~~eLl~~~~g~f~ 1128 (1139)
|+++++++...|.
T Consensus 230 ~~~l~~~p~~~~~ 242 (355)
T 1z47_A 230 PEEVYEKPGTLFV 242 (355)
T ss_dssp HHHHHHSCSSHHH
T ss_pred HHHHHhCccchHH
Confidence 9999987666553
No 71
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.6e-45 Score=405.22 Aligned_cols=215 Identities=27% Similarity=0.382 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccC--CCChHHHhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK--EYNLRRLRS 962 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~--~~~l~~lR~ 962 (1139)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999953 46999999999999999999999999999999999999999999999999998 777888899
Q ss_pred hceEEcccccc-ccc--cHHHHhccCCC-------cCC---HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH
Q 048639 963 QIGLVQQEPLL-FSC--SIRNNICYGNE-------AAS---EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029 (1139)
Q Consensus 963 ~i~~V~Qdp~L-F~g--TIreNL~~~~~-------~~s---d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1029 (1139)
+++||||+|.+ |.. |++||+.++.. ... .+++.++++.+++.++..+ ...+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQ-----------YIGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcC-----------ChhhCCHHH
Confidence 99999999865 554 99999987531 012 2457788888888655322 235799999
Q ss_pred HHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEE--EEEecCchhhhc-CCEEEEEe
Q 048639 1030 KQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQ--ITVAHRLATVIN-SDVIVVMD 1106 (1139)
Q Consensus 1030 rQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTv--I~IaHrl~ti~~-~DrI~vl~ 1106 (1139)
|||++|||||+.+|+|||||||||+||+.+.+.+.+.|++.. .+++|| |+|||+++.+.. ||||++|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~---------~~g~tv~~iivtHd~~~~~~~~d~v~~l~ 237 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLS---------DSYPTLAMIYVTHFIEEITANFSKILLLK 237 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH---------HHCTTCEEEEEESCGGGCCTTCCEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHH---------HCCCEEEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999998764 223349 999999999865 99999999
Q ss_pred CCEEEEecChhHHhhc
Q 048639 1107 KGEVVEMGSHSTLVAE 1122 (1139)
Q Consensus 1107 ~G~ive~G~~~eLl~~ 1122 (1139)
+|++++.|++++++++
T Consensus 238 ~G~i~~~g~~~~~~~~ 253 (279)
T 2ihy_A 238 DGQSIQQGAVEDILTS 253 (279)
T ss_dssp TTEEEEEEEHHHHCSH
T ss_pred CCEEEEECCHHHHhcc
Confidence 9999999999999753
No 72
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=7.8e-45 Score=402.80 Aligned_cols=217 Identities=29% Similarity=0.463 Sum_probs=178.9
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhh
Q 048639 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~ 962 (1139)
.+.|+++||++.| .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3569999999864 2599999999999999999999999999999999999999999999998
Q ss_pred hceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 048639 963 QIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR 1042 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~ 1042 (1139)
+++||||+|.+|++|++||+. +. ...+..+.++++.+++.+++..+|.++++.+++.+.+||||||||++|||||+++
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TT-CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred EEEEEeCCCccCcccHHHHhh-Cc-ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 499999999999999999998 53 2345566778888999999999999999999999999999999999999999999
Q ss_pred CCEEEeeccccCCCHHHHHHHHHHH-HhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhh
Q 048639 1043 PAIMLLDEATSALDAESERVIVSAL-EALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1043 p~ILlLDEaTS~LD~~te~~I~~~l-~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 1121 (1139)
|++||||||||+||+.++..+.+.+ ++. ..++|||+|||+++.+..||+|++|++|++++.|+|+++++
T Consensus 178 p~lllLDEPts~LD~~~~~~i~~~ll~~~----------~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKL----------MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHCCCCC----------TTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHh----------hCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999999874 332 22456999999999988899999999999999999999986
Q ss_pred ccCChHHHH
Q 048639 1122 ESQGVYSRL 1130 (1139)
Q Consensus 1122 ~~~g~f~~l 1130 (1139)
. ...|.+.
T Consensus 248 ~-~~~~~~~ 255 (290)
T 2bbs_A 248 L-RPDFSSK 255 (290)
T ss_dssp H-CHHHHHH
T ss_pred h-cHHHHHH
Confidence 4 3445443
No 73
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1e-44 Score=411.44 Aligned_cols=217 Identities=29% Similarity=0.524 Sum_probs=186.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999876653 5789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNMDA--DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
|||+|++.+|+. |++|||.|+.... ..++. ...+.+.++.+ |++.....++.+||||||||++|||||+.
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~-----~~~v~~~l~~~--~L~~~~~r~~~~LSgGq~QRvalArAL~~ 150 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEV-----EKRVVEIARKL--LIDNLLDRKPTQLSGGQQQRVALARALVK 150 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHT-----THHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999975 9999999975321 11111 11223445555 55556677888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|+++++....
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999988743 8999999999999865 9999999999999999999997653
No 74
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=6.6e-45 Score=402.01 Aligned_cols=218 Identities=27% Similarity=0.385 Sum_probs=186.3
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCC--CCCHHHHh
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK--DLDLKSLR 332 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~--~~~~~~~~ 332 (1139)
..|+++|++++|++ +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...++
T Consensus 20 ~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 35999999999963 46999999999999999999999999999999999999999999999999987 67777788
Q ss_pred cceEEEecCCCC-Ccc--cHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHH
Q 048639 333 KNIGAVSQEPSL-FTG--SLMDNIKVGNMD-------ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQ 402 (1139)
Q Consensus 333 ~~i~~v~Q~~~l-~~~--ti~~ni~~g~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkq 402 (1139)
++|+||+|++.+ +.. |++||+.++... ...+ . ...+.+.++.+ |++......+.+|||||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~-~-----~~~~~~~l~~~--gl~~~~~~~~~~LSgGqkq 168 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDE-I-----RNEAHQLLKLV--GMSAKAQQYIGYLSTGEKQ 168 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHH-H-----HHHHHHHHHHT--TCGGGTTSBGGGSCHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHH-H-----HHHHHHHHHHc--CChhHhcCChhhCCHHHHH
Confidence 899999999865 444 999999987421 1111 1 11233445555 5556677888999999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC-CCeE--EEEecCccchhc-cCEEEEEeCcEEEEecChh
Q 048639 403 RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ-GRTV--ILIAHRMSTIVN-ADMIAVVEDGQVTETGTHH 478 (1139)
Q Consensus 403 Ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tv--i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 478 (1139)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ |+|+ |+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 248 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999988743 8999 999999999865 9999999999999999999
Q ss_pred hhhcc
Q 048639 479 SLLQT 483 (1139)
Q Consensus 479 ~l~~~ 483 (1139)
++.+.
T Consensus 249 ~~~~~ 253 (279)
T 2ihy_A 249 DILTS 253 (279)
T ss_dssp HHCSH
T ss_pred HHhcc
Confidence 98653
No 75
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.2e-44 Score=412.86 Aligned_cols=220 Identities=26% Similarity=0.499 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|+ +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++..++.. ++++
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 499999999995 24699999999999999999999999999999999999999999999999999887654 5789
Q ss_pred eEEccccccccc-cHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+||||++.+|.. |++||+.++.. ..+ ++++.++++.+++.++.++.| .+||||||||+||||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalAr 154 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVAR 154 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999964 99999998642 122 346788999999987765544 479999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecCh
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSH 1116 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~ 1116 (1139)
||+++|++||||||||+||+.+.+.+++.|++... ..++|+|+|||+++.+.. ||||++|++|+|++.|+|
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~--------~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~ 226 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ--------KLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSP 226 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--------HHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH--------hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999987640 224569999999999865 999999999999999999
Q ss_pred hHHhhccCChHH
Q 048639 1117 STLVAESQGVYS 1128 (1139)
Q Consensus 1117 ~eLl~~~~g~f~ 1128 (1139)
+++++++...|.
T Consensus 227 ~~l~~~p~~~~~ 238 (372)
T 1v43_A 227 TEVYLRPNSVFV 238 (372)
T ss_dssp HHHHHCCSBHHH
T ss_pred HHHHhCcccHHH
Confidence 999987666664
No 76
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=7.2e-45 Score=393.02 Aligned_cols=211 Identities=29% Similarity=0.456 Sum_probs=182.7
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++||+++|+ + +|+|+||+|++ |.+||+||||||||||+++|.|+++|++|+|.+||.++...+ ..|++++
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999994 2 59999999999 999999999999999999999999999999999999987643 3578899
Q ss_pred EEccccccccc-cHHHHhccCCCcC----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 966 LVQQEPLLFSC-SIRNNICYGNEAA----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 966 ~V~Qdp~LF~g-TIreNL~~~~~~~----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
||||+|.+|.. |++||+.++.... .++++.++++.+++.++..+. ..+||||||||++|||||+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK-----------PARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCC-----------GGGSCHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCC-----------hhhCCHHHHHHHHHHHHHH
Confidence 99999999876 9999998864211 245678888888886553332 3579999999999999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChhHH
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTL 1119 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eL 1119 (1139)
++|++||||||||+||+.+.+.+.+.|++... ..++|||++||+++.+.. ||||++|++|++++.|+++++
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~--------~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR--------EFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH--------HHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999987630 223459999999998865 999999999999999999999
Q ss_pred hhcc
Q 048639 1120 VAES 1123 (1139)
Q Consensus 1120 l~~~ 1123 (1139)
++++
T Consensus 215 ~~~~ 218 (240)
T 2onk_A 215 FSAK 218 (240)
T ss_dssp HHSC
T ss_pred HhCc
Confidence 8764
No 77
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.2e-44 Score=401.42 Aligned_cols=216 Identities=27% Similarity=0.439 Sum_probs=176.3
Q ss_pred CccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhc
Q 048639 254 DGNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333 (1139)
Q Consensus 254 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 333 (1139)
.+.|+++|++|.+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3469999999864 3599999999999999999999999999999999999999999999998
Q ss_pred ceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 334 NIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
+|+||||++.+|++|++||+. +.. .....+.++++..++.+.+..+|.++++.+++++.+||||||||++|||||+++
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred EEEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 599999999999999999998 542 233444555666677788899999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHH-HHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHH
Q 048639 414 PPILLLDEATSALDSESEKLVQEAL-ERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNR 489 (1139)
Q Consensus 414 ~~illlDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 489 (1139)
|++||||||||+||+.++..+.+.+ +++.+++|+|+|||+++.+..||+|++|++|++++.|+++++......|..
T Consensus 178 p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 254 (290)
T 2bbs_A 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSS 254 (290)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHHCHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhhcHHHHH
Confidence 9999999999999999999999864 444468999999999998877999999999999999999998764444433
No 78
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.1e-44 Score=410.18 Aligned_cols=218 Identities=28% Similarity=0.518 Sum_probs=190.6
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
|+++||+++|+ +. +|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++..++. .|++++
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 24 9999999999999999999999999999999999999999999999999987554 478899
Q ss_pred EEccccccccc-cHHHHhccCCC---cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 048639 966 LVQQEPLLFSC-SIRNNICYGNE---AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLK 1041 (1139)
Q Consensus 966 ~V~Qdp~LF~g-TIreNL~~~~~---~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr 1041 (1139)
||||++.+|.. |++||+.++.. ...++++.++++.+++.++.++.| .+||||||||+||||||++
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHHHc
Confidence 99999999976 99999987521 112377889999999876654433 5799999999999999999
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEecChhHHh
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMGSHSTLV 1120 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G~~~eLl 1120 (1139)
+|++||||||||+||+.+.+.+.+.|++... ..++|+|+|||+++.+.. ||||++|++|+|++.|+|++++
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~--------~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHK--------KNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHH--------HTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999987640 224569999999998865 9999999999999999999999
Q ss_pred hccCChHH
Q 048639 1121 AESQGVYS 1128 (1139)
Q Consensus 1121 ~~~~g~f~ 1128 (1139)
+++...|.
T Consensus 217 ~~p~~~~~ 224 (348)
T 3d31_A 217 EKPVEGRV 224 (348)
T ss_dssp SSCCTTHH
T ss_pred hCcccHHH
Confidence 87666654
No 79
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2e-44 Score=409.60 Aligned_cols=216 Identities=33% Similarity=0.517 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.++. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 4899999999953 4699999999999999999999999999999999999999999999999999876653 5689
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
|||+|++.+|+. ||+|||.|+.. ....++.. ..+.+.++.+ |++......+.+||||||||++|||||+.
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~ 150 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEID-----KKVREVAKML--HIDKLLNRYPWQLSGGQQQRVAIARALVK 150 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCchHhhCChhhCCHHHHHHHHHHHHHHc
Confidence 999999999975 99999998631 11222221 1223445555 55556677889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~ 224 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999988743 8999999999998865 999999999999999999999764
No 80
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=9.7e-45 Score=410.44 Aligned_cols=218 Identities=29% Similarity=0.516 Sum_probs=186.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
..|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .+++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 36999999999932 2469999999999999999999999999999999999999999999999999977654 3678
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 335 IGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 335 i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
||||+|++.+|+. ||+|||.|+.. ....++.. ..+.+.++.+ |++......+.+||||||||++|||||+
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~-----~~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD-----ARVRELLRFM--RLESYANRFPHELSGGQQQRVALARALA 161 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHH-----HHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 9999999999975 99999998631 11222211 1223445555 5555667788899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999988743 8999999999999865 999999999999999999999764
No 81
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=9.1e-45 Score=412.61 Aligned_cols=222 Identities=28% Similarity=0.463 Sum_probs=191.6
Q ss_pred cEEEEeEEEECCCCCCcc--cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC---hHH
Q 048639 885 RIEFQNIKFNYPSRPEVT--VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN---LRR 959 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~--vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~---l~~ 959 (1139)
.|+++||+++|+ +.+ +|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++...+ ...
T Consensus 3 ~l~i~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFK---KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEG---GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEEC---CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 389999999995 246 999999999999999999999999999999999999999999999999986521 334
Q ss_pred HhhhceEEccccccccc-cHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHH
Q 048639 960 LRSQIGLVQQEPLLFSC-SIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQR 1032 (1139)
Q Consensus 960 lR~~i~~V~Qdp~LF~g-TIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQr 1032 (1139)
.|++++||||++.+|.. |++||+.++.. ..+ ++++.++++.+++.++.++.| .+||||||||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QR 148 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQR 148 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 57889999999999975 99999988632 112 356888999999987755443 4799999999
Q ss_pred HHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEE
Q 048639 1033 IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVV 1111 (1139)
Q Consensus 1033 lalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~iv 1111 (1139)
++|||||+++|++||||||||+||+.+...+++.|++... ..++|+|+|||+++.+.. ||||++|++|+|+
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~--------~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~ 220 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS--------RLGVTLLVVSHDPADIFAIADRVGVLVKGKLV 220 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHH--------HHCCEEEEEESCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999987640 224569999999999876 9999999999999
Q ss_pred EecChhHHhhccCChHH
Q 048639 1112 EMGSHSTLVAESQGVYS 1128 (1139)
Q Consensus 1112 e~G~~~eLl~~~~g~f~ 1128 (1139)
+.|+|+++++++...|.
T Consensus 221 ~~g~~~~l~~~p~~~~~ 237 (353)
T 1oxx_K 221 QVGKPEDLYDNPVSIQV 237 (353)
T ss_dssp EEECHHHHHHSCSSHHH
T ss_pred EEcCHHHHHhCcccHHH
Confidence 99999999987666654
No 82
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.9e-44 Score=389.65 Aligned_cols=211 Identities=27% Similarity=0.432 Sum_probs=181.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|++++|+ + +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..+++|+
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999995 2 59999999999 999999999999999999999999999999999999986533 3467899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP 415 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~ 415 (1139)
||||++.+|+. |++||+.++........ . ...+.+.++.+ |++......+.+||||||||++|||||+.+|+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~---~--~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVE---R--DRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHH---H--HHHHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCch---H--HHHHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999876 99999999753222111 0 12234556666 55556677888999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 416 ILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 416 illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
+||||||||+||+.+++.+.+.++++.+ |+|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999988743 8999999999998865 99999999999999999998854
No 83
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.5e-44 Score=392.29 Aligned_cols=209 Identities=22% Similarity=0.356 Sum_probs=187.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
-|+++||+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|+ |+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 3899999985 4899999999999999999999999999999999999999 9999999999988888999999
Q ss_pred eEEccccccccc-cHHHHhccCCC-cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNE-AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR 1042 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~-~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~ 1042 (1139)
+||||+|.+|.+ |++||+.++.. ..+++++.++++.+++.++..+ ...+||||||||++|||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----------STNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTS-----------BGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcC-----------ChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998865 99999998632 2247789999999998766432 3457999999999999999999
Q ss_pred CC-------EEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhh-cCCEEEEEeCCEEEEec
Q 048639 1043 PA-------IMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVI-NSDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1043 p~-------ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~-~~DrI~vl~~G~ive~G 1114 (1139)
|+ +||||||||+||+.+.+.+.+.|++.. .+++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~---------~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 215 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALS---------QQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 215 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHH---------HTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHH---------hCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99 999999999999999999999998764 23456999999999985 49999999999999999
Q ss_pred ChhHHhh
Q 048639 1115 SHSTLVA 1121 (1139)
Q Consensus 1115 ~~~eLl~ 1121 (1139)
+++++++
T Consensus 216 ~~~~~~~ 222 (249)
T 2qi9_C 216 RREEVLT 222 (249)
T ss_dssp EHHHHSC
T ss_pred CHHHHhc
Confidence 9999975
No 84
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-44 Score=396.22 Aligned_cols=213 Identities=31% Similarity=0.509 Sum_probs=180.6
Q ss_pred cEEEEeEEEECCCCCC--CccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhc
Q 048639 256 NIDIRDVCFAYPSRPD--QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~--~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 333 (1139)
.|+++|++++|+.... +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .+|+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~ 78 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRR 78 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGG
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhh
Confidence 3789999999962111 4699999999999999999999999999999999999999999999999988642 6678
Q ss_pred ceEEEecCC--CCCcccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCCC--ccccccCCCCChHHHHHH
Q 048639 334 NIGAVSQEP--SLFTGSLMDNIKVGNMD-----ADDEQIYNASMMANAHSFISQLPDQYS--TELGQRGVQLSGGQKQRI 404 (1139)
Q Consensus 334 ~i~~v~Q~~--~l~~~ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~--t~i~~~g~~LSgGqkqRi 404 (1139)
+|+||+|+| .+++.|++||+.++... ...+++.+++ +.+ |++ ........+||||||||+
T Consensus 79 ~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l---------~~~--gl~~~~~~~~~~~~LSgGq~qRv 147 (266)
T 2yz2_A 79 NIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAM---------EFV--GLDFDSFKDRVPFFLSGGEKRRV 147 (266)
T ss_dssp GEEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHH---------HHT--TCCHHHHTTCCGGGSCHHHHHHH
T ss_pred hEEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHH---------HHc--CcCCcccccCChhhCCHHHHHHH
Confidence 899999997 46678999999987421 1123333333 333 344 345566789999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhc
Q 048639 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 405 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
+|||||+.+|++||||||||+||+.++..+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 148 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 148 AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227 (266)
T ss_dssp HHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998874 58999999999999876 99999999999999999998864
No 85
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.3e-44 Score=410.55 Aligned_cols=216 Identities=28% Similarity=0.447 Sum_probs=181.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. +++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999963 4699999999999999999999999999999999999999999999999999876653 5689
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
|||||++.+|+. ||+|||.|+... ...++.. ..+.+.++.+ |++.....++.+||||||||++|||||+.
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~ 158 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEID-----KRVRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 158 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHH-----HHHHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999975 999999998532 2222221 1223445555 55556677889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 232 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLR 232 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHC
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999988743 8999999999999865 999999999999999999999764
No 86
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.8e-44 Score=405.62 Aligned_cols=211 Identities=33% Similarity=0.514 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
|+++|++++|+ +. +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .+++||
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 24 9999999999999999999999999999999999999999999999999977554 367899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHcc
Q 048639 337 AVSQEPSLFTG-SLMDNIKVGNM---DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 337 ~v~Q~~~l~~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~ 412 (1139)
||||++.+|+. ||+||+.|+.. ....+++ .+.++.+ |++.....++.+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v---------~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRV---------LDTARDL--KIEHLLDRNPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHH---------HHHHHHT--TCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHH---------HHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999976 99999998631 0111222 2344444 45555677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
+|++||||||||+||+.++..+.+.|+++. .|+|+|+|||+++.+.. ||+|++|++|++++.|+++++.+..
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999998874 38999999999998865 9999999999999999999997653
No 87
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.8e-44 Score=393.69 Aligned_cols=210 Identities=26% Similarity=0.380 Sum_probs=175.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc--ccCCccEEEECCcccCCCChHHH-hh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRF--YDPNEGIILIDGKGIKEYNLRRL-RS 962 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl--~~p~~G~I~idG~di~~~~l~~l-R~ 962 (1139)
|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+ ++|++|+|.+||.++...+.... |.
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 899999999953 4699999999999999999999999999999999999 89999999999999998887665 45
Q ss_pred hceEEccccccccc-cHHHHhccCCC---c--CC----HHHHHHHHHHcCch-HHHhhCCCCccccccCCCCC-CChHHH
Q 048639 963 QIGLVQQEPLLFSC-SIRNNICYGNE---A--AS----EAEIVEVSKKANIH-DFISSLPDGYDTVVGEKGCQ-LSGGQK 1030 (1139)
Q Consensus 963 ~i~~V~Qdp~LF~g-TIreNL~~~~~---~--~s----d~ei~~al~~~~l~-~~i~~lp~gldt~v~e~G~~-LSgGQr 1030 (1139)
.++||||+|.+|.+ |+++|+.++.. . .. ++++.++++..++. ++.++ ++ .+ ||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-------~~----~~~LSgGqk 149 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSR-------YL----NEGFSGGEK 149 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGS-------BT----TCC----HH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcC-------Cc----ccCCCHHHH
Confidence 69999999999875 99999975321 0 11 34577788888873 44322 22 34 999999
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc--CCEEEEEeCC
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN--SDVIVVMDKG 1108 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~--~DrI~vl~~G 1108 (1139)
||++|||||+++|+|||||||||+||+.+.+.+.+.|++.. .+++|||+|||+++.+.. ||||++|++|
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~---------~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G 220 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR---------GPNFGALVITHYQRILNYIQPDKVHVMMDG 220 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHC---------STTCEEEEECSSSGGGGTSCCSEEEEEETT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH---------hcCCEEEEEecCHHHHHHhcCCEEEEEECC
Confidence 99999999999999999999999999999999999999874 334569999999999886 5999999999
Q ss_pred EEEEecChhH
Q 048639 1109 EVVEMGSHST 1118 (1139)
Q Consensus 1109 ~ive~G~~~e 1118 (1139)
++++.|+++.
T Consensus 221 ~i~~~g~~~~ 230 (250)
T 2d2e_A 221 RVVATGGPEL 230 (250)
T ss_dssp EEEEEESHHH
T ss_pred EEEEEeCHHH
Confidence 9999999983
No 88
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.7e-44 Score=410.42 Aligned_cols=219 Identities=26% Similarity=0.445 Sum_probs=186.2
Q ss_pred cEEEEeEEEECCCCCCCc--cccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC---HHH
Q 048639 256 NIDIRDVCFAYPSRPDQL--ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD---LKS 330 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~--~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~---~~~ 330 (1139)
.|+++|++++|++ .+ +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 4899999999953 46 999999999999999999999999999999999999999999999999986521 223
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHH
Q 048639 331 LRKNIGAVSQEPSLFTG-SLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 331 ~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lA 407 (1139)
.+++||||||++.+|+. ||+|||.|+... ...++..+ .+.+.++.+ |++......+.+||||||||++||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK-----RVEEVAKIL--DIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHH
Confidence 46789999999999976 999999997532 22222211 223445555 555566778889999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhccc
Q 048639 408 RAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 408 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 484 (1139)
|||+.+|++||||||||+||+.++..+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 232 (353)
T 1oxx_K 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (353)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988743 8999999999999865 9999999999999999999997653
No 89
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=6.3e-44 Score=387.45 Aligned_cols=208 Identities=23% Similarity=0.378 Sum_probs=182.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|++++ ++|+|+||++++||+++|+||||||||||+++|+|+++|+ |+|.++|+++...+...+++++
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 4899999985 3899999999999999999999999999999999999999 9999999999888888888899
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNM-DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
+||+|++.+|.. |++||+.++.. ....+++. +.++.+ |++......+.+||||||||++|||||+.+
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN---------DVAGAL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHH---------HHHHHT--TCGGGTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHH---------HHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998865 99999998742 11222232 334444 455556778889999999999999999999
Q ss_pred CC-------EEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchh-ccCEEEEEeCcEEEEecChhhhhc
Q 048639 414 PP-------ILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIV-NADMIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 414 ~~-------illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
|+ +||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999998874 5899999999999985 499999999999999999999875
No 90
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.1e-44 Score=411.97 Aligned_cols=220 Identities=26% Similarity=0.476 Sum_probs=190.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC------CChH
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE------YNLR 958 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~------~~l~ 958 (1139)
.|+++||+++|+ +.++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.. ++.
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 389999999995 2469999999999999999999999999999999999999999999999999876 544
Q ss_pred HHhhhceEEcccccccc-ccHHHHhccCCC--cCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHH
Q 048639 959 RLRSQIGLVQQEPLLFS-CSIRNNICYGNE--AAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQ 1031 (1139)
Q Consensus 959 ~lR~~i~~V~Qdp~LF~-gTIreNL~~~~~--~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQ 1031 (1139)
.+++|+||||++.+|. .|++||+.++.. ..+ ++++.++++.+++.++.++.| .+|||||||
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~Q 146 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQ 146 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHHHHH
Confidence 3678999999999996 599999987521 112 346788899999877654433 479999999
Q ss_pred HHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEE
Q 048639 1032 RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110 (1139)
Q Consensus 1032 rlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~i 1110 (1139)
|+||||||+++|++||||||||+||+.+.+.+++.|++... ..++|+|+|||+++.+.. ||||++|++|+|
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~--------~~g~tvi~vTHd~~~a~~~adri~vl~~G~i 218 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR--------QLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL 218 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH--------HHTCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHH--------hcCCEEEEECCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999987640 124569999999999875 999999999999
Q ss_pred EEecChhHHhhccCChHH
Q 048639 1111 VEMGSHSTLVAESQGVYS 1128 (1139)
Q Consensus 1111 ve~G~~~eLl~~~~g~f~ 1128 (1139)
++.|+|+++++++...|.
T Consensus 219 ~~~g~~~~l~~~p~~~~~ 236 (372)
T 1g29_1 219 QQVGSPDEVYDKPANTFV 236 (372)
T ss_dssp EEEECHHHHHHSCSBHHH
T ss_pred EEeCCHHHHHhCcccHHH
Confidence 999999999987666664
No 91
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=6.2e-44 Score=408.11 Aligned_cols=216 Identities=28% Similarity=0.484 Sum_probs=183.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCC------CCHH
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD------LDLK 329 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~------~~~~ 329 (1139)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+ .++
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 3899999999963 469999999999999999999999999999999999999999999999999865 443
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHH
Q 048639 330 SLRKNIGAVSQEPSLFTG-SLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAI 406 (1139)
Q Consensus 330 ~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~l 406 (1139)
.+++||||+|++.+|+. |++|||.|+.. ....++..+ .+.+.++.+ |++......+.+||||||||++|
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRval 150 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ-----RVREVAELL--GLTELLNRKPRELSGGQRQRVAL 150 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCCcccCCHHHHHHHHH
Confidence 35789999999999964 99999998632 122222211 122334444 45555677788999999999999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 407 ARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 407 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
||||+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988743 8999999999999865 999999999999999999998754
No 92
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=3.9e-44 Score=394.36 Aligned_cols=216 Identities=22% Similarity=0.346 Sum_probs=180.8
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc--ccCCccEEEECCcccCCCChHHH-h
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRF--YDPNEGIILIDGKGIKEYNLRRL-R 961 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl--~~p~~G~I~idG~di~~~~l~~l-R 961 (1139)
.|+++||+++|+ +.++|+|+||+|++||++||+||||||||||+++|.|+ ++|++|+|.+||.++...+.... |
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 599999999995 34699999999999999999999999999999999999 57899999999999988877665 4
Q ss_pred hhceEEccccccccc-cHHHHhccCC---------CcCC----HHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCCh
Q 048639 962 SQIGLVQQEPLLFSC-SIRNNICYGN---------EAAS----EAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSG 1027 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~g-TIreNL~~~~---------~~~s----d~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSg 1027 (1139)
+.++||||+|.+|.+ |+++|+.++. +..+ ++++.++++..++.+.. .+..++ .+|||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~------~~~~~~---~~LSg 167 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDL------LTRSVN---VGFSG 167 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTT------TTSBTT---TTCCH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhH------hcCCcc---cCCCH
Confidence 569999999998876 8999986421 1112 23566777777764211 122221 25999
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc--CCEEEEE
Q 048639 1028 GQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN--SDVIVVM 1105 (1139)
Q Consensus 1028 GQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~--~DrI~vl 1105 (1139)
|||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.. ++++|||+|||+++.+.. ||||++|
T Consensus 168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~---------~~g~tviivtHd~~~~~~~~~d~v~~l 238 (267)
T 2zu0_C 168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR---------DGKRSFIIVTHYQRILDYIKPDYVHVL 238 (267)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC---------CSSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH---------hcCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence 99999999999999999999999999999999999999999764 334569999999999875 8999999
Q ss_pred eCCEEEEecChhHHhh
Q 048639 1106 DKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1106 ~~G~ive~G~~~eLl~ 1121 (1139)
++|++++.|+++++..
T Consensus 239 ~~G~i~~~g~~~~~~~ 254 (267)
T 2zu0_C 239 YQGRIVKSGDFTLVKQ 254 (267)
T ss_dssp ETTEEEEEECTTHHHH
T ss_pred ECCEEEEEcCHHHHhh
Confidence 9999999999998754
No 93
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=5.5e-44 Score=389.96 Aligned_cols=214 Identities=28% Similarity=0.434 Sum_probs=174.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhc--cCCCccEEEECCccCCCCCHHHH-h
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARF--YDPSNGDILIDSLNIKDLDLKSL-R 332 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~-~ 332 (1139)
.|+++|++|+|++ +++|+|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... +
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 3899999999963 4699999999999999999999999999999999998 88999999999999988776654 4
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCC-----CCCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccCCC-CChHHHHHH
Q 048639 333 KNIGAVSQEPSLFTG-SLMDNIKVGNM-----DADDEQIYNASMMANAHSFISQLPDQYS-TELGQRGVQ-LSGGQKQRI 404 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~~-ti~~ni~~g~~-----~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g~~-LSgGqkqRi 404 (1139)
..++||+|+|.+|+. |++||+.++.. ....++.. ..+.+.++.+ |++ ........+ ||||||||+
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv 152 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFW-----TKVKKALELL--DWDESYLSRYLNEGFSGGEKKRN 152 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHH-----HHHHHHHHHH--TCCGGGGGSBTTCC----HHHHH
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHH-----HHHHHHHHHc--CCChhHhcCCcccCCCHHHHHHH
Confidence 569999999999876 99999987421 01111111 1122344444 443 234555667 999999999
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc--cCEEEEEeCcEEEEecChhh
Q 048639 405 AIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN--ADMIAVVEDGQVTETGTHHS 479 (1139)
Q Consensus 405 ~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~~ 479 (1139)
+|||||+++|++||||||||+||+.++..+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999999885 48999999999999876 59999999999999999873
No 94
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2e-43 Score=386.27 Aligned_cols=208 Identities=22% Similarity=0.340 Sum_probs=182.0
Q ss_pred EEEEeEEEECCCC-CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 886 IEFQNIKFNYPSR-PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 886 I~~~nvsf~Y~~~-~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
|+++||+++|++. ...++|+|+||+|+ ||++||+||||||||||+++|.|++ |++|+|.+||.++... .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999531 01469999999999 9999999999999999999999999 9999999999998765 33 7889
Q ss_pred e-EEccccccccccHHHHhccCCC--cCCHHHHHHHHHHcCch-HHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 965 G-LVQQEPLLFSCSIRNNICYGNE--AASEAEIVEVSKKANIH-DFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 965 ~-~V~Qdp~LF~gTIreNL~~~~~--~~sd~ei~~al~~~~l~-~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
+ ||||+|.+ ..|++||+.++.+ ...++++.++++..++. +... ....+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILR-----------RKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGG-----------SBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 9999999987532 34567888899988876 5432 334579999999999999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CC-EEEEEeCCEEEEecChhH
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SD-VIVVMDKGEVVEMGSHST 1118 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~D-rI~vl~~G~ive~G~~~e 1118 (1139)
++|++||||||||+||+.+.+.+.+.|++.. + |+|+|||+++.+.. || +|++|++|++++.|++++
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~----------~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~ 212 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYG----------K--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSE 212 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSC----------S--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHH
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhc----------C--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHH
Confidence 9999999999999999999999999998753 2 59999999999865 99 999999999999999999
Q ss_pred Hhhc
Q 048639 1119 LVAE 1122 (1139)
Q Consensus 1119 Ll~~ 1122 (1139)
+.+.
T Consensus 213 l~~~ 216 (263)
T 2pjz_A 213 LLES 216 (263)
T ss_dssp HHTE
T ss_pred HHhh
Confidence 9853
No 95
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.1e-42 Score=382.80 Aligned_cols=216 Identities=24% Similarity=0.350 Sum_probs=180.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhc--cCCCccEEEECCccCCCCCHHHH-h
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARF--YDPSNGDILIDSLNIKDLDLKSL-R 332 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~--~~~~~G~i~~~g~~~~~~~~~~~-~ 332 (1139)
.|+++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... +
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 599999999995 34699999999999999999999999999999999999 57999999999999987776554 4
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCC---------CCCCHHHHHHHHHHhcHHHHHHhCCCCCCc-cccccCC-CCChHH
Q 048639 333 KNIGAVSQEPSLFTG-SLMDNIKVGN---------MDADDEQIYNASMMANAHSFISQLPDQYST-ELGQRGV-QLSGGQ 400 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~~-ti~~ni~~g~---------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~i~~~g~-~LSgGq 400 (1139)
..|+||+|+|.+|+. |++||+.++. +..+.++.. ..+.+.++.+ |+++ ....... +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQ-----DLMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHH-----HHHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHH-----HHHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 569999999998876 9999987531 111222211 1233455655 5543 3344554 599999
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc--cCEEEEEeCcEEEEecCh
Q 048639 401 KQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN--ADMIAVVEDGQVTETGTH 477 (1139)
Q Consensus 401 kqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~--~d~i~~l~~G~i~~~g~~ 477 (1139)
|||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999998875 48999999999999875 899999999999999999
Q ss_pred hhhh
Q 048639 478 HSLL 481 (1139)
Q Consensus 478 ~~l~ 481 (1139)
+++.
T Consensus 250 ~~~~ 253 (267)
T 2zu0_C 250 TLVK 253 (267)
T ss_dssp THHH
T ss_pred HHHh
Confidence 8763
No 96
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.9e-43 Score=385.08 Aligned_cols=207 Identities=17% Similarity=0.334 Sum_probs=178.9
Q ss_pred EEEEeEEEECCCC-CCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 257 IDIRDVCFAYPSR-PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 257 i~~~~v~~~y~~~-~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
|+++|++++|++. ..+++|+|+||+++ ||+++|+||||||||||+++|+|++ |++|+|.++|+++... .. +++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 01469999999999 9999999999999999999999999 9999999999988654 23 6789
Q ss_pred E-EEecCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccCCCCChHHHHHHHHHHHHc
Q 048639 336 G-AVSQEPSLFTGSLMDNIKVGNM--DADDEQIYNASMMANAHSFISQLPDQYS-TELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 336 ~-~v~Q~~~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
+ ||||+|.+ ..|++||+.++.. ....++ +.+.++.+ |++ ...+.++.+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~---------~~~~l~~~--gl~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDL---------FLEMLKAL--KLGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHH---------HHHHHHHT--TCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHH---------HHHHHHHc--CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 8899999987532 122222 23445555 666 6778889999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cC-EEEEEeCcEEEEecChhhhhc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-AD-MIAVVEDGQVTETGTHHSLLQ 482 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d-~i~~l~~G~i~~~g~~~~l~~ 482 (1139)
.+|++|||||||++||+.+++.+.+.|+++.+ |+|++||+++.+.. || ++++|++|++++.|+++++.+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999988754 99999999999865 99 999999999999999998864
No 97
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=4.1e-43 Score=382.76 Aligned_cols=203 Identities=26% Similarity=0.405 Sum_probs=175.4
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|. +|+++
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 3899999999951 24699999999999999999999999999999999999999999998 36789
Q ss_pred eEEccccccc-cccHHHHhccCCC----------cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 965 GLVQQEPLLF-SCSIRNNICYGNE----------AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 965 ~~V~Qdp~LF-~gTIreNL~~~~~----------~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
+||||+|.+| ..|++||+.++.. ...++++.++++.+++.++..+ ...+||||||||+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~qrv 137 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKR-----------EFTSLSGGQRQLI 137 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTS-----------BGGGSCHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcC-----------ChhhCCHHHHHHH
Confidence 9999999887 6799999987531 1113568888999988765433 2457999999999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
+|||||+++|+|||||||||+||+.+.+.+.+.|++... ..++|||+|||+++.+.. ||+|++|++|+ ++
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--------~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~ 208 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ--------SQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FK 208 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHH--------TSCCEEEEEESCHHHHHHHCSEEEEEETTE-EE
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--------hcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Ee
Confidence 999999999999999999999999999999999987641 214569999999999865 99999999999 99
Q ss_pred ecChhHHhhc
Q 048639 1113 MGSHSTLVAE 1122 (1139)
Q Consensus 1113 ~G~~~eLl~~ 1122 (1139)
.|++++++++
T Consensus 209 ~g~~~~~~~~ 218 (253)
T 2nq2_C 209 FGETRNILTS 218 (253)
T ss_dssp EEEHHHHCCH
T ss_pred cCCHHHHhCc
Confidence 9999999753
No 98
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.1e-42 Score=379.34 Aligned_cols=204 Identities=27% Similarity=0.445 Sum_probs=173.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+ +++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-------------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-------------CSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-------------eccE
Confidence 4899999999962 246999999999999999999999999999999999999999999982 4689
Q ss_pred EEEecCCCCC-cccHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHH
Q 048639 336 GAVSQEPSLF-TGSLMDNIKVGNMD-------ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 336 ~~v~Q~~~l~-~~ti~~ni~~g~~~-------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lA 407 (1139)
+||||++.++ ..|++||+.++... ...+. . ..+.+.++.+ |++......+.+||||||||++||
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-~-----~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA 140 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD-Y-----QVAMQALDYL--NLTHLAKREFTSLSGGQRQLILIA 140 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHH-H-----HHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHH-H-----HHHHHHHHHc--CChHHhcCChhhCCHHHHHHHHHH
Confidence 9999999887 56999999986421 11111 1 1122345554 555566778889999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-C-CCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhhhcc
Q 048639 408 RAIVKNPPILLLDEATSALDSESEKLVQEALERAM-Q-GRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSLLQT 483 (1139)
Q Consensus 408 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 483 (1139)
|||+.+|++||||||||+||+.+++.+.+.|+++. + |+|+|++||+++.+.. ||++++|++|+ ++.|+++++...
T Consensus 141 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~~ 218 (253)
T 2nq2_C 141 RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILTS 218 (253)
T ss_dssp HHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCCH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhCc
Confidence 99999999999999999999999999999998874 3 8999999999999865 99999999999 999999998653
No 99
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.2e-42 Score=364.81 Aligned_cols=194 Identities=20% Similarity=0.374 Sum_probs=165.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++++|+ + ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .+++.|
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 599999999995 3 6999999999999999999999999999999999999999999999999875 257889
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 336 GAVSQEPSLFTG-SLMDNIKVGNM----DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 336 ~~v~Q~~~l~~~-ti~~ni~~g~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
+||||+|.+|.. |++||+.++.. ....+++ .+.++.+ |++.. ++++.+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~---------~~~l~~~--gl~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEI---------MDALESV--EVLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHH---------HHHHHHT--TCCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHH---------HHHHHHc--CCCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999876 99999987521 1112222 2334555 56666 788899999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhc-cCEEEEEeCcEE
Q 048639 411 VKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVN-ADMIAVVEDGQV 471 (1139)
Q Consensus 411 ~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~-~d~i~~l~~G~i 471 (1139)
+.+|++|||||||++||+.++..+.+.|+++. +|+|+|++||+++.+.. ||+++ +.+|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 99999999999999999999999999998875 47999999999999987 67765 555665
No 100
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-42 Score=365.98 Aligned_cols=195 Identities=21% Similarity=0.389 Sum_probs=166.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhc
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i 964 (1139)
.|+++||+++|+ + ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 599999999995 3 6999999999999999999999999999999999999999999999999886 368899
Q ss_pred eEEccccccccc-cHHHHhccCCC----cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 048639 965 GLVQQEPLLFSC-SIRNNICYGNE----AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTL 1039 (1139)
Q Consensus 965 ~~V~Qdp~LF~g-TIreNL~~~~~----~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARAL 1039 (1139)
+||||+|.+|.+ |++||+.++.. ...++++.++++..++.++ ...+.+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~------------~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL------------KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT------------TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC------------CCChhhCCHHHHHHHHHHHHH
Confidence 999999999876 99999987421 1236678888888876533 233568999999999999999
Q ss_pred cCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEE
Q 048639 1040 LKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEV 1110 (1139)
Q Consensus 1040 lr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~i 1110 (1139)
+++|++||||||||+||+.+...+.+.|++.. ++++|||++||+++.+.. ||+|+ +.+|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~---------~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL---------KEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHH---------HHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHH---------hCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 99999999999999999999999999998764 223469999999999988 56655 556766
No 101
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=100.00 E-value=9.1e-38 Score=378.63 Aligned_cols=170 Identities=12% Similarity=0.102 Sum_probs=119.4
Q ss_pred CCccccceeE-EecCCCEEEEECCCCCcHHHHHHH--HHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcc
Q 048639 271 DQLILKGFSL-SIPAGKMVALVGSSGCGKSTVISL--VARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG 347 (1139)
Q Consensus 271 ~~~~l~~is~-~i~~g~~~~ivG~sGsGKSTll~~--l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 347 (1139)
+.++|++|+| .+++|++++|+||||||||||+++ +.|+++|++|.|+++|.+. ..+....++.+||++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-- 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-- 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT--
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc--
Confidence 3569999999 999999999999999999999999 7899999999999999873 222334567899999987531
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC--
Q 048639 348 SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSA-- 425 (1139)
Q Consensus 348 ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~-- 425 (1139)
+|+.+...... ++..+++...++.+.+. +....|||| +|++++|||||+.
T Consensus 101 ---~~l~~~~~~~~-~~~~~~l~~~~l~~~~~-----------~~~~~LS~g-------------~~~~lilDe~t~~~~ 152 (525)
T 1tf7_A 101 ---GKLFILDASPD-PEGQEVVGGFDLSALIE-----------RINYAIQKY-------------RARRVSIDSVTSVFQ 152 (525)
T ss_dssp ---TSEEEEECCCC-SSCCSCCSSHHHHHHHH-----------HHHHHHHHH-------------TCSEEEEECSTTTST
T ss_pred ---CcEEEEecCcc-cchhhhhcccCHHHHHH-----------HHHHHHHHc-------------CCCEEEECCHHHHHH
Confidence 12221110000 00000000111111111 112245555 4779999999985
Q ss_pred ---CCHHhHHHHHHHHHHHc-CCCeEEEEecCccch---------hc-cCEEEEEeCcEE
Q 048639 426 ---LDSESEKLVQEALERAM-QGRTVILIAHRMSTI---------VN-ADMIAVVEDGQV 471 (1139)
Q Consensus 426 ---LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~---------~~-~d~i~~l~~G~i 471 (1139)
+|+...+.+.+.++.+. .|+|+|++||+++.+ .. ||+|++|++|++
T Consensus 153 ~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~ 212 (525)
T 1tf7_A 153 QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLE 212 (525)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECS
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEcc
Confidence 58888889998888764 489999999999884 45 999999998763
No 102
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=2.3e-38 Score=350.80 Aligned_cols=233 Identities=17% Similarity=0.237 Sum_probs=186.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCCCccccEEEEeEEEECCCCCCc
Q 048639 822 FRDGIRAYQIFSLTVPSITELWTLIPTVISAITVLAPAFEILDRKTEIEPDAPESSESGRIKGRIEFQNIKFNYPSRPEV 901 (1139)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~~~nvsf~Y~~~~~~ 901 (1139)
.+...+++.+... ..++..+...+..+..+..+.+|+.++++.+++..... . ..+...+.|+++||+|+|+ .
T Consensus 42 ~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~-~~~~~~~~i~~~~vs~~y~----~ 113 (305)
T 2v9p_A 42 DSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--G-SWKSILTFFNYQNIELITF----I 113 (305)
T ss_dssp CHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--C-CTHHHHHHHHHTTCCHHHH----H
T ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--C-cccccCCeEEEEEEEEEcC----h
Confidence 3344333333333 46778888888899999999999999987654432111 1 1112235699999999995 4
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHH-
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRN- 980 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIre- 980 (1139)
++|+++||+|++||++|||||||||||||+++|+|++ +|+| +++++|+|.+|.+|+++
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ 172 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADT 172 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTC
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHH
Confidence 6999999999999999999999999999999999999 7999 35789999999999998
Q ss_pred HhccCCCcCCHHHHHHHHHHcCchHHHhh-CCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHH
Q 048639 981 NICYGNEAASEAEIVEVSKKANIHDFISS-LPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059 (1139)
Q Consensus 981 NL~~~~~~~sd~ei~~al~~~~l~~~i~~-lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~t 1059 (1139)
||.++ ++.++ . ++++++. +|+|+| |.+|||||||| |||++++|+||| ||+||+.+
T Consensus 173 ni~~~-~~~~~-~---------~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~ 228 (305)
T 2v9p_A 173 RAALV-DDATH-A---------CWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQA 228 (305)
T ss_dssp SCEEE-EEECH-H---------HHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTT
T ss_pred hhccC-ccccH-H---------HHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHH
Confidence 99986 45554 2 3456666 888988 67899999999 999999999999 99999999
Q ss_pred HHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHHHHh
Q 048639 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQLQA 1135 (1139)
Q Consensus 1060 e~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~~~~ 1135 (1139)
++.|+ . ++||++++..||+| ||++|+|++.|+|++| ++.|++++..+.
T Consensus 229 ~~~i~------~-----------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~~~ 276 (305)
T 2v9p_A 229 EDRYL------Y-----------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGRLD 276 (305)
T ss_dssp CGGGG------G-----------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTTTT
T ss_pred HHHHH------H-----------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHHcc
Confidence 88763 1 28999999999999 9999999999999999 478999987553
No 103
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.6e-34 Score=346.64 Aligned_cols=201 Identities=23% Similarity=0.350 Sum_probs=167.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|++++|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++ .+|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 5899999999953 36999999999999999999999999999999999999999999762 369
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 336 GAVSQEPSL-FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 336 ~~v~Q~~~l-~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
+|+||++.+ ++.|+.||+..... ... . ....+.+.++.+ |+.........+||||||||++|||||+++|
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~----~~~-~--~~~~~~~~l~~~--~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p 490 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDS----SKL-N--SNFYKTELLKPL--GIIDLYDRNVEDLSGGELQRVAIAATLLRDA 490 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHH----HHH-H--CHHHHHHTHHHH--TCTTTTTSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred EEEecCccCCCCCcHHHHHHhhhc----cCC-C--HHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 999999876 46699999875310 000 0 011122334444 4445567778899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeC--cEEEEecChhhhhc
Q 048639 415 PILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVED--GQVTETGTHHSLLQ 482 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 482 (1139)
++|||||||++||+.++..+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |++...|++++++.
T Consensus 491 ~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 491 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 9999999999999999999999998874 58999999999999876 999999986 88888999998864
No 104
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=1.5e-37 Score=344.41 Aligned_cols=239 Identities=18% Similarity=0.258 Sum_probs=192.5
Q ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccccCCCccEEEEeEEEECC
Q 048639 188 TAKRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKELEKIDGNIDIRDVCFAYP 267 (1139)
Q Consensus 188 ~~~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~ 267 (1139)
..+..+-+.+.+++.+..+ ..++..+...+..++++..+.+|+.++++.+++..... . ......+.|+++||+|+|+
T Consensus 36 a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~-~-~~~~~~~~i~~~~vs~~y~ 112 (305)
T 2v9p_A 36 ALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE-G-SWKSILTFFNYQNIELITF 112 (305)
T ss_dssp HHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS-C-CTHHHHHHHHHTTCCHHHH
T ss_pred HHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC-C-cccccCCeEEEEEEEEEcC
Confidence 3445556777777766555 47888899999999999999999999997644321111 1 1111223589999999996
Q ss_pred CCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcc
Q 048639 268 SRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG 347 (1139)
Q Consensus 268 ~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 347 (1139)
.++|+|+||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++++|.+
T Consensus 113 ----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ 167 (305)
T 2v9p_A 113 ----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLA 167 (305)
T ss_dssp ----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGG
T ss_pred ----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccc
Confidence 36999999999999999999999999999999999999 8988 4678999999999
Q ss_pred cHHH-HHhcCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCC
Q 048639 348 SLMD-NIKVGNMDADDEQIYNASMMANAHSFISQ-LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSA 425 (1139)
Q Consensus 348 ti~~-ni~~g~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~ 425 (1139)
|+++ ||.++ ++.++ .++++++. +|+|++ |.+|||||||| |||++++|+||| ||+
T Consensus 168 ti~~~ni~~~-~~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~ 223 (305)
T 2v9p_A 168 SLADTRAALV-DDATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSN 223 (305)
T ss_dssp GGTTCSCEEE-EEECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EES
T ss_pred cHHHHhhccC-ccccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECC
Confidence 9998 99987 33332 23467777 898876 78999999999 999999999999 999
Q ss_pred CCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhhccchHHHHHHhhcc
Q 048639 426 LDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLLQTSDFYNRLFTMQN 495 (1139)
Q Consensus 426 LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 495 (1139)
||+.++..+.. +|||++.+..||+| +|++|++++.|+++++ .+.|++++..+.
T Consensus 224 LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~~~ 276 (305)
T 2v9p_A 224 IDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGRLD 276 (305)
T ss_dssp SCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTTTT
T ss_pred CCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHHcc
Confidence 99999887752 29999999899999 9999999999999999 678888876544
No 105
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=5.1e-34 Score=343.93 Aligned_cols=201 Identities=23% Similarity=0.346 Sum_probs=167.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.++++|+++.|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++ .+|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceE
Confidence 5899999999952 36899999999999999999999999999999999999999999762 369
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 336 GAVSQEPSL-FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 336 ~~v~Q~~~l-~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
+||||++.. ++.||.||+..... ... .....+.+.++.+ |+.........+||||||||++|||||+.+|
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~----~~~---~~~~~~~~~l~~~--~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p 420 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDA----SKL---NSNFYKTELLKPL--GIIDLYDREVNELSGGELQRVAIAATLLRDA 420 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHH----HHH---TCHHHHHHTTTTT--TCGGGTTSBGGGCCHHHHHHHHHHHHHTSCC
T ss_pred EEEecCCcCCCCCcHHHHHHhhhc----cCC---CHHHHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence 999999876 45699998864200 000 0011122344444 4555667788999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeC--cEEEEecChhhhhc
Q 048639 415 PILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVED--GQVTETGTHHSLLQ 482 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 482 (1139)
++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |+++..|++++++.
T Consensus 421 ~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 421 DIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 9999999999999999999999998874 48999999999999976 999999996 78888999988864
No 106
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.7e-33 Score=338.20 Aligned_cols=202 Identities=19% Similarity=0.264 Sum_probs=166.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
..++++|+++.|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.+++ ..
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~ 331 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QI 331 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CC
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------ee
Confidence 35899999999953 368888999999999999999999999999999999999999999876 36
Q ss_pred eEEEecCCCC-CcccHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 335 IGAVSQEPSL-FTGSLMDNIKVGNMDA--DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 335 i~~v~Q~~~l-~~~ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
++|+||++.. +..|++||+.+..... ...+ .+.+.++.+ |+.......+.+||||||||++|||||+
T Consensus 332 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~--------~~~~~l~~~--~l~~~~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 332 LSYKPQRIFPNYDGTVQQYLENASKDALSTSSW--------FFEEVTKRL--NLHRLLESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSH--------HHHHTTTTT--TGGGCTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred eEeechhcccccCCCHHHHHHHhhhhccchhHH--------HHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 8999999865 4679999998643211 1110 012233333 4555567788999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeC--cEEEEecChhhhhc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVED--GQVTETGTHHSLLQ 482 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 482 (1139)
.+|+||||||||++||+.++..+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |++...+++.++..
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 9999999999999999999999999998874 48999999999999976 999999986 56666777766543
No 107
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=8e-34 Score=354.93 Aligned_cols=205 Identities=23% Similarity=0.354 Sum_probs=155.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcce
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNI 335 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i 335 (1139)
.|+++|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 49999999999742 256999999999999999999999999999999999999999999999862 147
Q ss_pred EEEecCCCC-----CcccHHHHH---------------------------------------------------------
Q 048639 336 GAVSQEPSL-----FTGSLMDNI--------------------------------------------------------- 353 (1139)
Q Consensus 336 ~~v~Q~~~l-----~~~ti~~ni--------------------------------------------------------- 353 (1139)
+|++|++.. .+.|+++++
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 777776521 123444443
Q ss_pred ---------hcCCC---CCC--------HH-------HHH------HHH--------HHhcHHHHHHhCCCCCCcc--cc
Q 048639 354 ---------KVGNM---DAD--------DE-------QIY------NAS--------MMANAHSFISQLPDQYSTE--LG 390 (1139)
Q Consensus 354 ---------~~g~~---~~~--------~~-------~~~------~~~--------~~~~~~~~i~~l~~g~~t~--i~ 390 (1139)
.++.. ..+ .+ ++. ++. ....+.+.++.+ |++.. ..
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l--GL~~~~~~~ 896 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML--GLDPEIVSH 896 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT--TCCHHHHHH
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc--CCCchhhcC
Confidence 33210 000 00 000 000 011234456665 55543 35
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhc-cCEEEEEeCc
Q 048639 391 QRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVN-ADMIAVVEDG 469 (1139)
Q Consensus 391 ~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i~~l~~G 469 (1139)
..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||+++.+.. ||+|++|++|
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 667899999999999999999999999999999999999999999988765 6799999999999875 9999999999
Q ss_pred EEEEecC
Q 048639 470 QVTETGT 476 (1139)
Q Consensus 470 ~i~~~g~ 476 (1139)
+++..|+
T Consensus 975 ~Iv~~G~ 981 (986)
T 2iw3_A 975 RMTPSGH 981 (986)
T ss_dssp BCCC---
T ss_pred EEEEeCC
Confidence 9987764
No 108
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.8e-32 Score=328.76 Aligned_cols=198 Identities=26% Similarity=0.395 Sum_probs=162.8
Q ss_pred EeEEEECCCCCCCccccceeEEecCC-----CEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 260 RDVCFAYPSRPDQLILKGFSLSIPAG-----KMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 260 ~~v~~~y~~~~~~~~l~~is~~i~~g-----~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
++++|+|++. ..+++|+||++++| |+++|+||||||||||+++|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 5678888642 35899999999999 7899999999999999999999999999972 11 246
Q ss_pred eEEEecCCC-CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 335 IGAVSQEPS-LFTGSLMDNIKVGNMD--ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 335 i~~v~Q~~~-l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
++|+||++. .|+.|+++|+...... ...+... +.++.+ |+.........+||||||||++|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~---------~~l~~l--~l~~~~~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQT---------DVVKPL--RIDDIIDQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHH---------HTHHHH--TSTTTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHH---------HHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999975 4678999998643211 1222111 223333 3445566788899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeC--cEEEEecChhhhhcc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVED--GQVTETGTHHSLLQT 483 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~~ 483 (1139)
.+|+||||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |+++..|++++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999998864 48999999999999976 999999996 899999999999875
No 109
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=3.6e-32 Score=339.14 Aligned_cols=206 Identities=25% Similarity=0.386 Sum_probs=139.6
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCCHHHHH---------------------HHHhccccCC-------ccEEEECCccc
Q 048639 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVL---------------------ALLLRFYDPN-------EGIILIDGKGI 952 (1139)
Q Consensus 901 ~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~---------------------~lL~rl~~p~-------~G~I~idG~di 952 (1139)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.++
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3589999999999999999999999999998 8888888888 55667777665
Q ss_pred CCCChHHHhhhceEEccccccc--------------------cccHHHHhccCCC-cCC--HHH-----H------HHHH
Q 048639 953 KEYNLRRLRSQIGLVQQEPLLF--------------------SCSIRNNICYGNE-AAS--EAE-----I------VEVS 998 (1139)
Q Consensus 953 ~~~~l~~lR~~i~~V~Qdp~LF--------------------~gTIreNL~~~~~-~~s--d~e-----i------~~al 998 (1139)
... .|+.+++|+|.+.++ ..|++||+.++.. ... +.+ + .+.+
T Consensus 111 ~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 111 SRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred hcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 432 345677777765432 4589999987421 000 011 1 1123
Q ss_pred HHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC--EEEeeccccCCCHHHHHHHHHHHHhhCCCCCC
Q 048639 999 KKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA--IMLLDEATSALDAESERVIVSALEALNPKSSS 1076 (1139)
Q Consensus 999 ~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~--ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~ 1076 (1139)
+.+++.+. -++.+ ...||||||||++|||||+.+|+ |||||||||+||+.+...+.+.|+++.
T Consensus 187 ~~~gL~~~------~~~~~----~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~----- 251 (670)
T 3ux8_A 187 QNVGLDYL------TLSRS----AGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR----- 251 (670)
T ss_dssp HHTTCTTC------CTTCB----GGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH-----
T ss_pred HHcCCchh------hhcCC----cccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHH-----
Confidence 34443221 12333 35799999999999999999988 999999999999999999999999764
Q ss_pred ccccCCCeEEEEEecCchhhhcCCEEEEE------eCCEEEEecChhHHhhccCChHHH
Q 048639 1077 CGELASRTTQITVAHRLATVINSDVIVVM------DKGEVVEMGSHSTLVAESQGVYSR 1129 (1139)
Q Consensus 1077 ~~~~~~~tTvI~IaHrl~ti~~~DrI~vl------~~G~ive~G~~~eLl~~~~g~f~~ 1129 (1139)
..++|||+|+|+++.+..||||++| ++|++++.|+++++.+++...+..
T Consensus 252 ----~~g~tvi~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~ 306 (670)
T 3ux8_A 252 ----DLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQ 306 (670)
T ss_dssp ----HTTCEEEEECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHH
T ss_pred ----HcCCEEEEEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCchhHHHH
Confidence 2345699999999988889999999 899999999999999765444443
No 110
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=8.9e-30 Score=318.93 Aligned_cols=209 Identities=30% Similarity=0.435 Sum_probs=153.7
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHH---------HHHHhccCCC------cc------EEEECCccCCCCC---H
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVI---------SLVARFYDPS------NG------DILIDSLNIKDLD---L 328 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll---------~~l~g~~~~~------~G------~i~~~g~~~~~~~---~ 328 (1139)
..|+||||+|++|++++|+|+||||||||+ +++.+...+. +| .+.++..++.... +
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 3444433332 22 3555555543211 0
Q ss_pred H-------HH-------------------------------hcceEEEecCCCCCcc-----------------------
Q 048639 329 K-------SL-------------------------------RKNIGAVSQEPSLFTG----------------------- 347 (1139)
Q Consensus 329 ~-------~~-------------------------------~~~i~~v~Q~~~l~~~----------------------- 347 (1139)
. .+ .+..|+++|+..+++.
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0 00 1345788887765532
Q ss_pred ----------cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC---
Q 048639 348 ----------SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP--- 414 (1139)
Q Consensus 348 ----------ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~--- 414 (1139)
|+.|++.|.... .. .....+.+..+.-++ ..+|+.+.+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~---~~------~~~~~~~L~~vGL~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p 827 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNI---PS------IKRTLQVLHDVGLGY-VKLGQPATTLSGGEAQRIKLASELRKRDTGR 827 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTC---HH------HHHHHHHHHHTTGGG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSS
T ss_pred cCCHHHHhhCCHHHHHHHHhcc---hh------HHHHHHHHHHcCCch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCC
Confidence 444444443211 00 112234456663332 3578999999999999999999999876
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhccCEEEEE------eCcEEEEecChhhhhccchHH
Q 048639 415 PILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVNADMIAVV------EDGQVTETGTHHSLLQTSDFY 487 (1139)
Q Consensus 415 ~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~ 487 (1139)
+||||||||++||+.+.+.+++.|+++. +|+|||+|||+++.+..||+|++| ++|+|+++|+|+++++..+.|
T Consensus 828 ~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~sy 907 (916)
T 3pih_A 828 TLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSY 907 (916)
T ss_dssp EEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchH
Confidence 7999999999999999999999998874 589999999999999889999999 899999999999998876555
Q ss_pred HHHH
Q 048639 488 NRLF 491 (1139)
Q Consensus 488 ~~~~ 491 (1139)
...+
T Consensus 908 t~~~ 911 (916)
T 3pih_A 908 TGRF 911 (916)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 111
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.96 E-value=9.1e-29 Score=306.38 Aligned_cols=211 Identities=27% Similarity=0.371 Sum_probs=158.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHH-hcc-------CCCcc-------------
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA-RFY-------DPSNG------------- 314 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~-g~~-------~~~~G------------- 314 (1139)
.++++|++. ..|+||||+|++|++++|+|+||||||||++.|+ |.+ .+..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 588888852 2799999999999999999999999999999864 221 12233
Q ss_pred EEEECCccCCCC---CHH-------HH---------hcceEEEecCCCCC------------------------------
Q 048639 315 DILIDSLNIKDL---DLK-------SL---------RKNIGAVSQEPSLF------------------------------ 345 (1139)
Q Consensus 315 ~i~~~g~~~~~~---~~~-------~~---------~~~i~~v~Q~~~l~------------------------------ 345 (1139)
.|.+|+.++... ++. .+ .+.+||++|...+.
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 378888887432 111 11 13468888853221
Q ss_pred -------------------------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCc-cccccCCCCChH
Q 048639 346 -------------------------TGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYST-ELGQRGVQLSGG 399 (1139)
Q Consensus 346 -------------------------~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~i~~~g~~LSgG 399 (1139)
..|+.||+.+... . ..+. ...+.++.+ |+.. ..+....+||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~-~--~~~~------~~~~~L~~~--gL~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS-I--PKIK------RKLETLYDV--GLGYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS-C--HHHH------HHHHHHHHT--TCSSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc-c--hhHH------HHHHHHHHc--CCCcccccCchhhCCHH
Confidence 1144455544321 1 1111 123456666 5555 578889999999
Q ss_pred HHHHHHHHHHHccCC---CEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhccCEEEEE------eCc
Q 048639 400 QKQRIAIARAIVKNP---PILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVNADMIAVV------EDG 469 (1139)
Q Consensus 400 qkqRi~lARal~~~~---~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l------~~G 469 (1139)
|||||+|||||+++| ++|||||||++||+.+...+.+.|+++. +|+|||+|||+++.+..||+|++| ++|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G 929 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGG 929 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCC
Confidence 999999999999875 9999999999999999999999998874 589999999999998789999999 789
Q ss_pred EEEEecChhhhhccch
Q 048639 470 QVTETGTHHSLLQTSD 485 (1139)
Q Consensus 470 ~i~~~g~~~~l~~~~~ 485 (1139)
+|+..|+++++.+...
T Consensus 930 ~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 930 QIVAVGTPEEVAEVKE 945 (972)
T ss_dssp SEEEEESHHHHHTCTT
T ss_pred EEEEecCHHHHHhCch
Confidence 9999999999976543
No 112
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=1.4e-28 Score=305.79 Aligned_cols=216 Identities=25% Similarity=0.378 Sum_probs=158.0
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHH-HHhcc-------CC---------------
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISL-VARFY-------DP--------------- 311 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~-l~g~~-------~~--------------- 311 (1139)
..++++|+++ .+|+||||+|++||+++|+|+||||||||++. |.|.+ +|
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 3599999986 16999999999999999999999999999996 76554 23
Q ss_pred ---Ccc-------EEEECCccCCCCCH----------HHHhcce---------EEEecC---------------------
Q 048639 312 ---SNG-------DILIDSLNIKDLDL----------KSLRKNI---------GAVSQE--------------------- 341 (1139)
Q Consensus 312 ---~~G-------~i~~~g~~~~~~~~----------~~~~~~i---------~~v~Q~--------------------- 341 (1139)
.+| .|.++|.++...+. +.+|+.+ ||.++.
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 466 68899988753321 2233222 232221
Q ss_pred -CCCC-------------------------cccHHHHHhcCCCCCCHHHHHH---HHHHhcHHHHHHhCCCCCCc-cccc
Q 048639 342 -PSLF-------------------------TGSLMDNIKVGNMDADDEQIYN---ASMMANAHSFISQLPDQYST-ELGQ 391 (1139)
Q Consensus 342 -~~l~-------------------------~~ti~~ni~~g~~~~~~~~~~~---~~~~~~~~~~i~~l~~g~~t-~i~~ 391 (1139)
-.++ ..+|.||+.+.. .+.+.- ......+.+.++.+ |+.. .++.
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv----~e~l~~~~~~~~~~~~~~~L~~~--gL~~~~l~~ 726 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTV----DEAHDFFADESAIFRALDTLREV--GLGYLRLGQ 726 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBH----HHHHHHTTTSHHHHHHHHHHHHT--TCTTSBTTC
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccH----HHHHHHhhcchHHHHHHHHHHHc--CCCcccccC
Confidence 1111 125555554321 000000 00011234566776 4444 4688
Q ss_pred cCCCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhccCEEEEE-
Q 048639 392 RGVQLSGGQKQRIAIARAIVKN---PPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVNADMIAVV- 466 (1139)
Q Consensus 392 ~g~~LSgGqkqRi~lARal~~~---~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l- 466 (1139)
.+.+|||||||||+|||+|+++ |+||||||||++||+.+.+.+.+.|+++. +|+|||+|||+++.+..||+|++|
T Consensus 727 ~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~ 806 (842)
T 2vf7_A 727 PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIG 806 (842)
T ss_dssp CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEC
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEC
Confidence 8999999999999999999996 79999999999999999999999998874 589999999999999779999999
Q ss_pred -----eCcEEEEecChhhhhccc
Q 048639 467 -----EDGQVTETGTHHSLLQTS 484 (1139)
Q Consensus 467 -----~~G~i~~~g~~~~l~~~~ 484 (1139)
++|+|++.|+++++.+..
T Consensus 807 p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 807 PGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp SSSGGGCCSEEEEECHHHHTTCT
T ss_pred CCCCCCCCEEEEEcCHHHHHhCc
Confidence 799999999999987643
No 113
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7e-32 Score=317.52 Aligned_cols=192 Identities=15% Similarity=0.076 Sum_probs=154.3
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc-E-EEECCcccCCCChHHHh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG-I-ILIDGKGIKEYNLRRLR 961 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G-~-I~idG~di~~~~l~~lR 961 (1139)
+.++++||+++|+ ++||++++||+++|+||||||||||+++|+|++.|++| + |.+|| | .|
T Consensus 117 ~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~ 178 (460)
T 2npi_A 117 TMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQ 178 (460)
T ss_dssp THHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TT
T ss_pred chhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------cc
Confidence 4578888888882 69999999999999999999999999999999999999 9 99998 1 37
Q ss_pred hhceEEcccccccc----ccHHHHhccCCCc----CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 962 SQIGLVQQEPLLFS----CSIRNNICYGNEA----ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~----gTIreNL~~~~~~----~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
+++++|||++.+|. .|+++|+ ++... ..++++.++++.+| ++.... ..+||||||||+
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~g-----------l~~~~~--~~~LSgGq~qrl 244 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFG-----------LERINE--NKDLYLECISQL 244 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCC-----------SSSGGG--CHHHHHHHHHHH
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhC-----------CCcccc--hhhhhHHHHHHH
Confidence 88999999996653 4899999 65321 01122223333333 333332 568999999999
Q ss_pred HHHHH--hcCCCCE----EEeec-cccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCch------hhhc-C
Q 048639 1034 AIART--LLKRPAI----MLLDE-ATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLA------TVIN-S 1099 (1139)
Q Consensus 1034 alARA--Llr~p~I----LlLDE-aTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~------ti~~-~ 1099 (1139)
+|||| |+.+|++ ||||| ||++||+. .+.+.+.+++. +. |+|+|+|+.+ .+.. |
T Consensus 245 alAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~-----------~~-tviiVth~~~~~l~~~~~~~~~ 311 (460)
T 2npi_A 245 GQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL-----------NV-NIMLVLCSETDPLWEKVKKTFG 311 (460)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT-----------TC-CEEEEECCSSCTHHHHHHHHHH
T ss_pred HHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh-----------CC-CEEEEEccCchhhhHHHHHHhc
Confidence 99999 9999999 99999 99999999 77777777652 33 4999999987 4444 9
Q ss_pred CE-----EEEEe-CCEEEEecChhHHhh
Q 048639 1100 DV-----IVVMD-KGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1100 Dr-----I~vl~-~G~ive~G~~~eLl~ 1121 (1139)
|| |++|+ +|+|+ .|+++++.+
T Consensus 312 dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 312 PELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp HHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred ccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 99 99999 99999 999998854
No 114
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.95 E-value=3.8e-28 Score=302.08 Aligned_cols=217 Identities=23% Similarity=0.328 Sum_probs=158.0
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHH-h----ccC---CCccE-----------
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA-R----FYD---PSNGD----------- 315 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~-g----~~~---~~~G~----------- 315 (1139)
..++++|++. .+|+||||+|++|++++|+|+||||||||+++|+ | .+. +..|.
T Consensus 646 ~~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~ 717 (993)
T 2ygr_A 646 RQLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLD 717 (993)
T ss_dssp SEEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCS
T ss_pred ceEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccc
Confidence 3589999851 2799999999999999999999999999999853 2 222 23443
Q ss_pred --EEECCccCCCC---CHH-------HH---------hcceEEEecCCCCC-----------------------------
Q 048639 316 --ILIDSLNIKDL---DLK-------SL---------RKNIGAVSQEPSLF----------------------------- 345 (1139)
Q Consensus 316 --i~~~g~~~~~~---~~~-------~~---------~~~i~~v~Q~~~l~----------------------------- 345 (1139)
|.+++.++... ++. .+ .+..||++|...+.
T Consensus 718 ~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~c 797 (993)
T 2ygr_A 718 KLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPC 797 (993)
T ss_dssp EEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEEC
T ss_pred eEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeee
Confidence 45566655321 111 11 13467887753220
Q ss_pred --------------------------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCc-cccccCCCCCh
Q 048639 346 --------------------------TGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYST-ELGQRGVQLSG 398 (1139)
Q Consensus 346 --------------------------~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~i~~~g~~LSg 398 (1139)
..|+.||+.+... . ..+ ....+.++.+ |+.. ..+..+.+|||
T Consensus 798 e~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~-~--~~~------~~~~~~L~~l--gL~~~~l~~~~~~LSG 866 (993)
T 2ygr_A 798 EVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP-I--AGV------HRYLRTLVDV--GLGYVRLGQPAPTLSG 866 (993)
T ss_dssp TTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT-C--HHH------HHHHHHHHHT--TGGGSBTTCCGGGSCH
T ss_pred hhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc-c--hHH------HHHHHHHHHc--CCCcccccCccccCCH
Confidence 1133444443221 0 111 1123456666 5555 57888999999
Q ss_pred HHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhccCEEEEE------eC
Q 048639 399 GQKQRIAIARAIVKNP---PILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVNADMIAVV------ED 468 (1139)
Q Consensus 399 GqkqRi~lARal~~~~---~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i~~l------~~ 468 (1139)
||||||+|||+|+++| ++|||||||++||+.+...+.+.|+++. +|+|||+|||+++.+..||+|++| ++
T Consensus 867 GekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~~~ 946 (993)
T 2ygr_A 867 GEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGAGG 946 (993)
T ss_dssp HHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTTSC
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCCCC
Confidence 9999999999999875 9999999999999999999999998874 589999999999998789999999 68
Q ss_pred cEEEEecChhhhhccchHHHHH
Q 048639 469 GQVTETGTHHSLLQTSDFYNRL 490 (1139)
Q Consensus 469 G~i~~~g~~~~l~~~~~~~~~~ 490 (1139)
|+|++.|+++++.+....|...
T Consensus 947 G~Iv~~G~~~el~~~~~~~t~~ 968 (993)
T 2ygr_A 947 GTVVAQGTPEDVAAVPASYTGK 968 (993)
T ss_dssp SEEEEEECHHHHHHCTTCHHHH
T ss_pred CEEEEecCHHHHHhCCHHHHHH
Confidence 9999999999997655444333
No 115
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=1.9e-28 Score=289.74 Aligned_cols=201 Identities=15% Similarity=0.220 Sum_probs=150.2
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc--------------------------------------CCcc
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD--------------------------------------PNEG 943 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~--------------------------------------p~~G 943 (1139)
.+++++||++++| +++|+|+||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3799999999999 999999999999999999966553 4578
Q ss_pred EEEECCcccCCCChHHHhhh-ceEEccccccccccHHHHhccCCCcCC--------------------------------
Q 048639 944 IILIDGKGIKEYNLRRLRSQ-IGLVQQEPLLFSCSIRNNICYGNEAAS-------------------------------- 990 (1139)
Q Consensus 944 ~I~idG~di~~~~l~~lR~~-i~~V~Qdp~LF~gTIreNL~~~~~~~s-------------------------------- 990 (1139)
++.+||.+++..++..+++. +++++|++.++-.+..++..+.+....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999999988778888777 799999998887665544332211110
Q ss_pred ----------------------------------HHHHHHHHHHcCchHH--Hhh-------CCCCccc---cccCCCCC
Q 048639 991 ----------------------------------EAEIVEVSKKANIHDF--ISS-------LPDGYDT---VVGEKGCQ 1024 (1139)
Q Consensus 991 ----------------------------------d~ei~~al~~~~l~~~--i~~-------lp~gldt---~v~e~G~~ 1024 (1139)
.+++.+.++..++.+. ... -+.|++. .+..++..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 0112222222222110 000 0112222 33444433
Q ss_pred --------CChHHHHHHHHHHHhcCCC--CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCch
Q 048639 1025 --------LSGGQKQRIAIARTLLKRP--AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLA 1094 (1139)
Q Consensus 1025 --------LSgGQrQrlalARALlr~p--~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ 1094 (1139)
||||||||++|||+|+.+| +||||||||++||+.+.+.|.+.|+++. ++ +|||+|||+++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~---------~~-~~vi~itH~~~ 357 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA---------DT-RQVLVVTHLAQ 357 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT---------TT-SEEEEECSCHH
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh---------CC-CEEEEEeCcHH
Confidence 7999999999999999999 9999999999999999999999999874 33 45999999999
Q ss_pred hhhcCCEEEEE----eCCEEEEe
Q 048639 1095 TVINSDVIVVM----DKGEVVEM 1113 (1139)
Q Consensus 1095 ti~~~DrI~vl----~~G~ive~ 1113 (1139)
.+..||+|+|| ++|+++..
T Consensus 358 ~~~~~d~i~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 358 IAARAHHHYKVEKQVEDGRTVSH 380 (415)
T ss_dssp HHTTCSEEEEEEEEEETTEEEEE
T ss_pred HHhhcCeEEEEEEeccCCceEEE
Confidence 88889999999 99998765
No 116
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=7.3e-28 Score=284.65 Aligned_cols=200 Identities=19% Similarity=0.295 Sum_probs=149.4
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC--------------------------------------CCccE
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD--------------------------------------PSNGD 315 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~--------------------------------------~~~G~ 315 (1139)
++++++|++++| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999977764 45788
Q ss_pred EEECCccCCCCCHHHHhcc-eEEEecCCCCCcccHHHHHhcCCCCCCH--------------------------------
Q 048639 316 ILIDSLNIKDLDLKSLRKN-IGAVSQEPSLFTGSLMDNIKVGNMDADD-------------------------------- 362 (1139)
Q Consensus 316 i~~~g~~~~~~~~~~~~~~-i~~v~Q~~~l~~~ti~~ni~~g~~~~~~-------------------------------- 362 (1139)
+.+||.++...+...+... +++++|++.++..+..++..+-......
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999876666666665 8999999987765554443332111100
Q ss_pred ------------HHHHHHH------H-------HhcHHHHHHhC--CC----------------CCCc---cccccCCC-
Q 048639 363 ------------EQIYNAS------M-------MANAHSFISQL--PD----------------QYST---ELGQRGVQ- 395 (1139)
Q Consensus 363 ------------~~~~~~~------~-------~~~~~~~i~~l--~~----------------g~~t---~i~~~g~~- 395 (1139)
+++.+.+ + ...+.+.+..+ |. |.+. .+..++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 0000000 0 00111223333 11 1111 22333333
Q ss_pred -------CChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEE
Q 048639 396 -------LSGGQKQRIAIARAIVKNP--PILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVV 466 (1139)
Q Consensus 396 -------LSgGqkqRi~lARal~~~~--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l 466 (1139)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++.+++|||+|||+++.+..||++++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 8999999999999999999 9999999999999999999999999988889999999999888789999999
Q ss_pred ----eCcEEEEe
Q 048639 467 ----EDGQVTET 474 (1139)
Q Consensus 467 ----~~G~i~~~ 474 (1139)
++|+++..
T Consensus 369 ~k~~~~G~~~~~ 380 (415)
T 4aby_A 369 EKQVEDGRTVSH 380 (415)
T ss_dssp EEEEETTEEEEE
T ss_pred EEeccCCceEEE
Confidence 99998765
No 117
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.5e-30 Score=301.42 Aligned_cols=193 Identities=13% Similarity=0.108 Sum_probs=148.6
Q ss_pred cceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCcc-E-EEECCccCCCCCHHHHhcceEEEecCCCCCc----ccH
Q 048639 276 KGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG-D-ILIDSLNIKDLDLKSLRKNIGAVSQEPSLFT----GSL 349 (1139)
Q Consensus 276 ~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G-~-i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~----~ti 349 (1139)
.++||++++|++++|+||||||||||+++|+|+++|++| + |.+||. .++.++|+||++.+|. .|+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccCCeeeeccchhhcccccccch
Confidence 378999999999999999999999999999999999999 9 999981 3678999999986543 489
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH--HccCCCE----EEEeC-C
Q 048639 350 MDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA--IVKNPPI----LLLDE-A 422 (1139)
Q Consensus 350 ~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa--l~~~~~i----lllDE-p 422 (1139)
+||+ ++........ ....+.+.++.+ |++.... +.+||||||||++|||| |+.+|++ ||||| |
T Consensus 200 ~eni-~~~~~~~~~~-----~~~~~~~ll~~~--gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP 269 (460)
T 2npi_A 200 QLPT-WGQSLTSGAT-----LLHNKQPMVKNF--GLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS 269 (460)
T ss_dssp TCTT-CSCBCBSSCC-----SSCCBCCEECCC--CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred hhhh-cccccccCcc-----hHHHHHHHHHHh--CCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence 9999 7642100000 000011122222 4444333 77999999999999999 9999999 99999 9
Q ss_pred CCCCCHHhHHHHHHHHHHHcCCCeEEEEecCcc------chhc-cCE-----EEEEe-CcEEEEecChhhhhcc-chHHH
Q 048639 423 TSALDSESEKLVQEALERAMQGRTVILIAHRMS------TIVN-ADM-----IAVVE-DGQVTETGTHHSLLQT-SDFYN 488 (1139)
Q Consensus 423 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~------~~~~-~d~-----i~~l~-~G~i~~~g~~~~l~~~-~~~~~ 488 (1139)
|++||+. ...+.+.+++. ++|+|+|||+.+ .+.. ||+ |++|+ +|+++ .|+++++.+. ....+
T Consensus 270 ts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~~i~ 345 (460)
T 2npi_A 270 ISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRTSIR 345 (460)
T ss_dssp GGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHHHHH
T ss_pred ccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHHHHH
Confidence 9999999 66667666654 789999999988 5544 999 99999 99999 9999887542 23344
Q ss_pred HHH
Q 048639 489 RLF 491 (1139)
Q Consensus 489 ~~~ 491 (1139)
.++
T Consensus 346 ~~f 348 (460)
T 2npi_A 346 EYF 348 (460)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 118
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=8.4e-26 Score=256.61 Aligned_cols=195 Identities=18% Similarity=0.278 Sum_probs=140.6
Q ss_pred cceeEEecCCCEEEEECCCCCcHHHHHHHHHhcc----------------------------------------------
Q 048639 276 KGFSLSIPAGKMVALVGSSGCGKSTVISLVARFY---------------------------------------------- 309 (1139)
Q Consensus 276 ~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~---------------------------------------------- 309 (1139)
+++++++.+| +++|+||||||||||+.+|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3678999999 99999999999999999998443
Q ss_pred ----CCCccEEEECCccCCCCCHHHHhcceEEEecCCCCC-cccHHHHHhcCCCC---------------CCHHHHHHHH
Q 048639 310 ----DPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLF-TGSLMDNIKVGNMD---------------ADDEQIYNAS 369 (1139)
Q Consensus 310 ----~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~-~~ti~~ni~~g~~~---------------~~~~~~~~~~ 369 (1139)
.+.+|.+.+||.++...+...+...+++.+|+..++ .+++.+|+.....+ ..++++.+..
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 344578899998875545566667889889988766 67999988754210 0111222221
Q ss_pred HHhc------------H-HHHHHhCCCCCCccc------cccCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCC
Q 048639 370 MMAN------------A-HSFISQLPDQYSTEL------GQRGVQLSGGQKQRIAIARAIV----KNPPILLLDEATSAL 426 (1139)
Q Consensus 370 ~~~~------------~-~~~i~~l~~g~~t~i------~~~g~~LSgGqkqRi~lARal~----~~~~illlDEpts~L 426 (1139)
.... . .+....++.|+++.+ ...+..||||||||++|||||+ .+|++|||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 1100 0 001123444555433 2346799999999999999996 789999999999999
Q ss_pred CHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEE--EEEeCcEE
Q 048639 427 DSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMI--AVVEDGQV 471 (1139)
Q Consensus 427 D~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i--~~l~~G~i 471 (1139)
|+.....+.+.++++.+++|+|++||+.+.+..||++ ++|++|+.
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 9999999999999887788999999998777779987 88888854
No 119
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.92 E-value=1.9e-25 Score=253.68 Aligned_cols=202 Identities=21% Similarity=0.266 Sum_probs=142.3
Q ss_pred ceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc------------------------------------------------
Q 048639 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRF------------------------------------------------ 937 (1139)
Q Consensus 906 ~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl------------------------------------------------ 937 (1139)
++++++.+| .++|+|+||||||||+.+|..+
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578889999 9999999999999999999843
Q ss_pred --ccCCccEEEECCcccCCCChHHHhhhceEEccccccc-cccHHHHhccCCCcC----------------CHHHHHHHH
Q 048639 938 --YDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYGNEAA----------------SEAEIVEVS 998 (1139)
Q Consensus 938 --~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF-~gTIreNL~~~~~~~----------------sd~ei~~al 998 (1139)
+.+.+|.+.+||.+++.-++..+...+++.||+..++ .|++.+|+... |.. +.+++.+.+
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2344679999999886666677777899999998765 89999998653 210 001122221
Q ss_pred HHc------------Cch-HHHhhCCCCcccccc------CCCCCCChHHHHHHHHHHHhc----CCCCEEEeeccccCC
Q 048639 999 KKA------------NIH-DFISSLPDGYDTVVG------EKGCQLSGGQKQRIAIARTLL----KRPAIMLLDEATSAL 1055 (1139)
Q Consensus 999 ~~~------------~l~-~~i~~lp~gldt~v~------e~G~~LSgGQrQrlalARALl----r~p~ILlLDEaTS~L 1055 (1139)
... .+. .....++.|+++.++ .....||||||||++|||||. ++|+|||||||||+|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 110 000 011224456655433 234689999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEE--EEEeCCEE-EEecChhHH
Q 048639 1056 DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVI--VVMDKGEV-VEMGSHSTL 1119 (1139)
Q Consensus 1056 D~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI--~vl~~G~i-ve~G~~~eL 1119 (1139)
|+.+.+.+.+.|++.. . ++|+|+|||+.+.+..||++ ++|++|+. +...+.++.
T Consensus 255 D~~~~~~l~~~l~~~~---------~-~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 255 DDYNAERFKRLLKENS---------K-HTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp CHHHHHHHHHHHHHHT---------T-TSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred CHHHHHHHHHHHHHhc---------C-CCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 9999999999998763 2 34699999998877789987 88888865 344444443
No 120
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.91 E-value=1.3e-27 Score=252.13 Aligned_cols=158 Identities=12% Similarity=0.130 Sum_probs=101.8
Q ss_pred CccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 048639 272 QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMD 351 (1139)
Q Consensus 272 ~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ 351 (1139)
+.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|. +.++.. +...++++++|+||++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 3589996 89999999999999999999999999 99999994 222221 1223567899999997 56
Q ss_pred HH-hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHh
Q 048639 352 NI-KVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES 430 (1139)
Q Consensus 352 ni-~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~ 430 (1139)
|+ .++.+. ...+........+.+.++. | | |||||++|||||+.+|++||||||||+ +
T Consensus 78 nl~~~~~~~--~~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~ 135 (208)
T 3b85_A 78 KIDPYLRPL--HDALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----T 135 (208)
T ss_dssp --CTTTHHH--HHHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----C
T ss_pred HHHHHHHHH--HHHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----c
Confidence 66 342100 0000000001112223322 2 1 999999999999999999999999999 8
Q ss_pred HHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcE
Q 048639 431 EKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQ 470 (1139)
Q Consensus 431 ~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~ 470 (1139)
+..+.+.|+++.+++|+| +||+++.+.. +...++|.
T Consensus 136 ~~~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G~ 171 (208)
T 3b85_A 136 PAQMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSGL 171 (208)
T ss_dssp HHHHHHHHTTBCTTCEEE-EEEC---------------CC
T ss_pred HHHHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCcH
Confidence 888888888774578999 9999886543 33445663
No 121
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.91 E-value=7.1e-27 Score=246.52 Aligned_cols=159 Identities=14% Similarity=0.148 Sum_probs=100.6
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHH
Q 048639 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRN 980 (1139)
Q Consensus 901 ~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIre 980 (1139)
.++|+|+ ++||++||+||||||||||+++|.|+ +|++|+|. +.++.. +...+|++++||||+| ++
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 3589985 89999999999999999999999999 99999994 333331 2234678899999998 66
Q ss_pred Hh-ccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHH
Q 048639 981 NI-CYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059 (1139)
Q Consensus 981 NL-~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~t 1059 (1139)
|+ .++.+.. +.+........+.+.++. | + |||||++|||||+.+|+|||||||||+ +
T Consensus 78 nl~~~~~~~~--~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~ 135 (208)
T 3b85_A 78 KIDPYLRPLH--DALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----T 135 (208)
T ss_dssp --CTTTHHHH--HHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----C
T ss_pred HHHHHHHHHH--HHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----c
Confidence 76 3321100 000000000011111211 1 1 999999999999999999999999999 8
Q ss_pred HHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEE
Q 048639 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEV 1110 (1139)
Q Consensus 1060 e~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~i 1110 (1139)
...+.+.|++. .+++|+| |||+++.+. ++...++|..
T Consensus 136 ~~~l~~~l~~l----------~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 136 PAQMKMFLTRL----------GFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp HHHHHHHHTTB----------CTTCEEE-EEEC---------------CCH
T ss_pred HHHHHHHHHHh----------cCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 88999999864 2245588 999988654 3445566643
No 122
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.90 E-value=5.5e-27 Score=250.84 Aligned_cols=166 Identities=17% Similarity=0.257 Sum_probs=121.4
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh-HHHhhhceEEcccccccc-----
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL-RRLRSQIGLVQQEPLLFS----- 975 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l-~~lR~~i~~V~Qdp~LF~----- 975 (1139)
..|+||||+|++|+.+||+||||||||||+++|.|++ | |+|.+ |+++.+.+. ...|+.++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 6 99999 888765432 235778999999986664
Q ss_pred ------ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHH-----HHHhcCCCC
Q 048639 976 ------CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAI-----ARTLLKRPA 1044 (1139)
Q Consensus 976 ------gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlal-----ARALlr~p~ 1044 (1139)
+++++| .++. .++++.++++..... .++ .+||||||||++| ||+++++|+
T Consensus 87 ~~~l~~~~~~~~-~~g~---~~~~i~~~l~~~~~~------------il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT---LKSEYDKAKEQNKIC------------LFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TCEEEEEEETTE-EEEE---EHHHHHHHHHTTCEE------------EEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred cchhhhhhcccc-cCCC---cHHHHHHHHhCCCcE------------EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 344445 3332 345677777654321 111 4699999999999 899999999
Q ss_pred EEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeC
Q 048639 1045 IMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDK 1107 (1139)
Q Consensus 1045 ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~ 1107 (1139)
+++|||||+++|.++++.|++.+.+.. .+ .| ++| +..||+|+|+++
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~---------~~-~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLN---------IE-LH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHH---------HH-HH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHH---------HH-HH---hhc----ccCCCEEEECCC
Confidence 999999999999999999999998653 12 22 677 577999988865
No 123
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.89 E-value=2.1e-23 Score=240.06 Aligned_cols=84 Identities=23% Similarity=0.333 Sum_probs=77.0
Q ss_pred cccCCCCChHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhccCE
Q 048639 390 GQRGVQLSGGQKQRIAIARAIV------KNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVNADM 462 (1139)
Q Consensus 390 ~~~g~~LSgGqkqRi~lARal~------~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~ 462 (1139)
+....+||||||||++|||||+ .+|++|||||||++||+.+...+.+.++++. .|+|+|+|||+++....||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 4567899999999999999999 7999999999999999999999999998875 48999999999998777999
Q ss_pred EEEEeCcEEEE
Q 048639 463 IAVVEDGQVTE 473 (1139)
Q Consensus 463 i~~l~~G~i~~ 473 (1139)
+++|++|++++
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999974
No 124
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.89 E-value=6.7e-25 Score=225.37 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=106.2
Q ss_pred ceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccc--cccccHHHHhc
Q 048639 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPL--LFSCSIRNNIC 983 (1139)
Q Consensus 906 ~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~--LF~gTIreNL~ 983 (1139)
||||++++||.++|+||||||||||++++++- ... ++.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~------~~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP------TEV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG------GGE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC------CeE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 68999999999999999999999999996532 111 2333444 67888862 33333333321
Q ss_pred cCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHH---
Q 048639 984 YGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESE--- 1060 (1139)
Q Consensus 984 ~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te--- 1060 (1139)
. ...... ..|+.+.+... ...|+|||||++||||+..+|++|+|||||++||+.++
T Consensus 64 ~---------~~~~~~-----------~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y---------IVSKRL-----------QLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H---------HHHHHH-----------HTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H---------HHHHHH-----------hCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 111111 12444443332 34699999999999999999999999999999999944
Q ss_pred -------------HHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEE
Q 048639 1061 -------------RVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVI 1102 (1139)
Q Consensus 1061 -------------~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI 1102 (1139)
+.+++.|++.. .+++|+|+|+|+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~---------~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQ---------REGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHH---------HHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHH---------hcCCcEEEEeCCHHHhhhhhhc
Confidence 77777766543 2244599999999999887775
No 125
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.89 E-value=8.1e-24 Score=243.53 Aligned_cols=83 Identities=27% Similarity=0.336 Sum_probs=74.5
Q ss_pred CCCCCChHHHHHHHHHHHhc------CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCch
Q 048639 1021 KGCQLSGGQKQRIAIARTLL------KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLA 1094 (1139)
Q Consensus 1021 ~G~~LSgGQrQrlalARALl------r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ 1094 (1139)
...+||||||||++|||||+ .+|++|||||||++||+.+...+.+.|++.. ..+.|||+|+|+++
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~---------~~g~tvi~itH~~~ 346 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELE---------RLNKVIVFITHDRE 346 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGG---------GSSSEEEEEESCHH
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHH---------hCCCEEEEEecchH
Confidence 34579999999999999999 7999999999999999999999999999864 33456999999999
Q ss_pred hhhcCCEEEEEeCCEEEE
Q 048639 1095 TVINSDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1095 ti~~~DrI~vl~~G~ive 1112 (1139)
.+..||+|++|++|++++
T Consensus 347 ~~~~~d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 347 FSEAFDRKLRITGGVVVN 364 (365)
T ss_dssp HHTTCSCEEEEETTEEC-
T ss_pred HHHhCCEEEEEECCEEEe
Confidence 988899999999999975
No 126
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.89 E-value=8.3e-25 Score=225.29 Aligned_cols=147 Identities=13% Similarity=0.156 Sum_probs=109.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHH
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIY 366 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~ 366 (1139)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ +..+|+. +...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~~------- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSKF------- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EETT-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhhc-------
Confidence 689999999999999999999985 556665543322113567899999987 3344442 1100
Q ss_pred HHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHhHHHHHHHHH
Q 048639 367 NASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA-----IVKNPPILLLDE--ATSALDSESEKLVQEALE 439 (1139)
Q Consensus 367 ~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa-----l~~~~~illlDE--pts~LD~~~~~~i~~~l~ 439 (1139)
.+ .+..+++.+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.+.
T Consensus 64 --------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 64 --------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp --------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred --------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 01 1145678888999999999999996 999999999999 999999999999988886
Q ss_pred HHcCCCeEEEEec---Cccchhc-cCEEEEEeCcEEEE
Q 048639 440 RAMQGRTVILIAH---RMSTIVN-ADMIAVVEDGQVTE 473 (1139)
Q Consensus 440 ~~~~~~tvi~itH---~~~~~~~-~d~i~~l~~G~i~~ 473 (1139)
+ .+.|+|+++| +.+.+.. ||+ .+|++.+
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 5 4677999986 6677765 777 5667665
No 127
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.89 E-value=1.2e-24 Score=223.60 Aligned_cols=149 Identities=19% Similarity=0.226 Sum_probs=105.4
Q ss_pred ceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCC--CCcccHHHHHh
Q 048639 277 GFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPS--LFTGSLMDNIK 354 (1139)
Q Consensus 277 ~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~--l~~~ti~~ni~ 354 (1139)
||||++++||+++|+||||||||||++++.+- ...+ +.+.++ ++++|++. .+.+++++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~------~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP------TEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG------GGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC------CeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 68999999999999999999999999996532 1112 122233 67778763 12222222221
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHh----
Q 048639 355 VGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES---- 430 (1139)
Q Consensus 355 ~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~---- 430 (1139)
... ...+..|+.+.+. .....|||||||++||||+..+|++++|||||++||+.+
T Consensus 64 ------------~~~--------~~~~~~g~~~~~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 ------------YIV--------SKRLQLGKLTVVD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp ------------HHH--------HHHHHTTCCEEEE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred ------------HHH--------HHHHhCCCeEEEE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 000 1111225544443 334569999999999999999999999999999999994
Q ss_pred ------------HHHHHHHHHHHc-CCCeEEEEecCccchhccCEE
Q 048639 431 ------------EKLVQEALERAM-QGRTVILIAHRMSTIVNADMI 463 (1139)
Q Consensus 431 ------------~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i 463 (1139)
...+.+.++++. +|.|+|+|||+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 477777766543 489999999999998877664
No 128
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.89 E-value=1.3e-25 Score=254.44 Aligned_cols=150 Identities=17% Similarity=0.212 Sum_probs=119.0
Q ss_pred EEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEE
Q 048639 888 FQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLV 967 (1139)
Q Consensus 888 ~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V 967 (1139)
|++++| | .++++++||.|++|+.++|+||||||||||+++|.|+++|++|.|.++|.+ ++.+..+|+.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 666766 6 248999999999999999999999999999999999999999999999976 33333344445544
Q ss_pred ccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEE
Q 048639 968 QQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIML 1047 (1139)
Q Consensus 968 ~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILl 1047 (1139)
+| |||+||++|||||.++|++|+
T Consensus 223 ~g---------------------------------------------------------gg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 223 FG---------------------------------------------------------GNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp CB---------------------------------------------------------TTBCHHHHHHHHTTSCCSEEE
T ss_pred eC---------------------------------------------------------CChhHHHHHHHHhhhCCCEEE
Confidence 30 799999999999999999999
Q ss_pred eeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhH
Q 048639 1048 LDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHST 1118 (1139)
Q Consensus 1048 LDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~e 1118 (1139)
|||||+ .+ +++.|++.. .+++|+|+++|+++....||||++|++|+....+-+.+
T Consensus 246 ldE~~~---~e----~~~~l~~~~---------~g~~tvi~t~H~~~~~~~~dri~~l~~g~~~~~~~~~~ 300 (330)
T 2pt7_A 246 LGELRS---SE----AYDFYNVLC---------SGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFE 300 (330)
T ss_dssp ECCCCS---TH----HHHHHHHHH---------TTCCCEEEEEECSSHHHHHHHHHHHHHTSGGGTTSCHH
T ss_pred EcCCCh---HH----HHHHHHHHh---------cCCCEEEEEEcccHHHHHhhhheehhcCCcccCCCCHH
Confidence 999998 22 445555443 34445999999999888899999999986433344443
No 129
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.88 E-value=5.1e-24 Score=219.41 Aligned_cols=148 Identities=13% Similarity=0.189 Sum_probs=108.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHH
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIV 995 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~ 995 (1139)
+++|+||||||||||+++|.|++. |.++|.+..+......++++++++|++ +..+|+. + ..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~--~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-S--SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-E--ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-H--hh------
Confidence 689999999999999999999995 667887765443225678999999987 3334431 1 00
Q ss_pred HHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH-----hcCCCCEEEeec--cccCCCHHHHHHHHHHHH
Q 048639 996 EVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART-----LLKRPAIMLLDE--ATSALDAESERVIVSALE 1068 (1139)
Q Consensus 996 ~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA-----Llr~p~ILlLDE--aTS~LD~~te~~I~~~l~ 1068 (1139)
+ .+ -+..++..+.+||||||||++|||| ++.+|++|+||| ||+++|+.+.+.+.+.++
T Consensus 63 ------~-------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 63 ------F-------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp ------T-------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred ------c-------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 0 00 0134556667899999999999996 999999999999 999999999999999997
Q ss_pred hhCCCCCCccccCCCeEEEEEec---Cchhhhc-CCEEEEEeCCEEEEe
Q 048639 1069 ALNPKSSSCGELASRTTQITVAH---RLATVIN-SDVIVVMDKGEVVEM 1113 (1139)
Q Consensus 1069 ~~~~~~~~~~~~~~~tTvI~IaH---rl~ti~~-~DrI~vl~~G~ive~ 1113 (1139)
+ .++|+|+++| +.+.+.. ||| .+|+|++.
T Consensus 128 ~------------~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 128 D------------PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp C------------TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEEC
T ss_pred c------------CCCeEEEEEccCCCchHHHHHHhc----CCcEEEEe
Confidence 3 2345788886 6666655 776 66777764
No 130
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.88 E-value=5.7e-26 Score=242.96 Aligned_cols=166 Identities=15% Similarity=0.176 Sum_probs=117.4
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCH-HHHhcceEEEecCCCCCcc----
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL-KSLRKNIGAVSQEPSLFTG---- 347 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~-~~~~~~i~~v~Q~~~l~~~---- 347 (1139)
.-|+||||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++...++ ...++.++|++|++.+|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 6 99999 877644322 2346789999999876643
Q ss_pred -------cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHH-----HHHHccCCC
Q 048639 348 -------SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAI-----ARAIVKNPP 415 (1139)
Q Consensus 348 -------ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~l-----ARal~~~~~ 415 (1139)
++.+| .+|.+ .+++.++ ++. +....++ .+||||||||++| ||+++.+|+
T Consensus 87 ~~~l~~~~~~~~-~~g~~---~~~i~~~---------l~~---~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGTL---KSEYDKA---------KEQ---NKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TCEEEEEEETTE-EEEEE---HHHHHHH---------HHT---TCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred cchhhhhhcccc-cCCCc---HHHHHHH---------HhC---CCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 33334 23322 2222222 222 1112222 6899999999999 899999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeC
Q 048639 416 ILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVED 468 (1139)
Q Consensus 416 illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~ 468 (1139)
+++|||||+++|.+++..+.+.+....+++| ++| +..||.|+++++
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 9999999999999999999999987766666 677 466999888764
No 131
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.87 E-value=1.2e-24 Score=251.29 Aligned_cols=175 Identities=17% Similarity=0.191 Sum_probs=137.3
Q ss_pred ccccceeEEEeCCc--------------------EEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHh
Q 048639 902 TVLNNFSLQIEPGL--------------------KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge--------------------~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR 961 (1139)
.+|++|||+|++|| .+||+||||||||||+++|.|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999998763 1
Q ss_pred hhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChH--HHHHHHHHHHh
Q 048639 962 SQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGG--QKQRIAIARTL 1039 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG--QrQrlalARAL 1039 (1139)
.++++|++....-|++||+.++.+ ++.+.+.++..++.+. +..+ .||+| ||||++|||||
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~---~~~~~~~L~~~~L~~~--------~~~~-----~lS~G~~~kqrv~la~aL 171 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST---NFPPDTYLEKMKFYEY--------DFFI-----IISATRFKKNDIDIAKAI 171 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS---SCCHHHHHHHTTGGGC--------SEEE-----EEESSCCCHHHHHHHHHH
T ss_pred --eEEeccccccCCeeehHhhcccch---HHHHHHHHHHcCCCcc--------CCeE-----EeCCCCccHHHHHHHHHH
Confidence 288999986557799999877643 3457778888887542 2222 28999 99999999999
Q ss_pred cC----------CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccc--cCCCeEEEEEecCchh--hhc-CCEEE
Q 048639 1040 LK----------RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGE--LASRTTQITVAHRLAT--VIN-SDVIV 1103 (1139)
Q Consensus 1040 lr----------~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~--~~~~tTvI~IaHrl~t--i~~-~DrI~ 1103 (1139)
.+ +|++++|||||++||+.+++.+.+.|++...+. -.+ ....+++++.||.++. +.. ||+|.
T Consensus 172 ~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~--l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 172 SMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT--FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH--HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHH--HHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99 999999999999999999999999888752000 000 0123558888998886 655 77774
No 132
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.86 E-value=2.3e-24 Score=252.38 Aligned_cols=200 Identities=15% Similarity=0.152 Sum_probs=156.9
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCc---ccCCCC----
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK---GIKEYN---- 956 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~---di~~~~---- 956 (1139)
+.++++||++.|+. +.++|+++ |+|.+||++||+|+||||||||+++|.|+++|+.|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999963 34699999 999999999999999999999999999999999999999998 565432
Q ss_pred -hHHHhhhceEEccc--cccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH
Q 048639 957 -LRRLRSQIGLVQQE--PLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI 1033 (1139)
Q Consensus 957 -l~~lR~~i~~V~Qd--p~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl 1033 (1139)
...+++.+++++|+ |....-|+.+|+.+. .+.... +......++ +...+||+|| ||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~------ae~~~~-~~~~v~~~l------------d~l~~lS~g~-qrv 266 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRI------AEDFRD-RGQHVLLIM------------DSLTRYAMAQ-REI 266 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHH------HHHHHT-TTCEEEEEE------------ECHHHHHHHH-HHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHH------HHHHHh-CCCCHHHHH------------HhHHHHHHHH-HHH
Confidence 35688899999995 344466888988653 122111 111111111 2245799999 999
Q ss_pred HHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCe-----EEEEEecCchhhhcCCEEEEEeCC
Q 048639 1034 AIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRT-----TQITVAHRLATVINSDVIVVMDKG 1108 (1139)
Q Consensus 1034 alARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~t-----TvI~IaHrl~ti~~~DrI~vl~~G 1108 (1139)
+|| +++|++ |+++|+.+...+.+.+++.... +...++ ||+++||+++ ...||++++|.+|
T Consensus 267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~-----~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG 331 (438)
T 2dpy_A 267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNG-----IHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDG 331 (438)
T ss_dssp HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCC-----STTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSE
T ss_pred HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhc-----cCCCCcccceeEEEEeCCCcc-chhhceEEEEeCc
Confidence 999 899998 9999999999999999876410 001142 6999999999 6669999999999
Q ss_pred EEEEecChhHHhh
Q 048639 1109 EVVEMGSHSTLVA 1121 (1139)
Q Consensus 1109 ~ive~G~~~eLl~ 1121 (1139)
+|+..|++.++..
T Consensus 332 ~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 332 HIVLSRRLAEAGH 344 (438)
T ss_dssp EEEECHHHHHTTC
T ss_pred EEEEeCCHHHccC
Confidence 9999999998865
No 133
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.86 E-value=3.8e-24 Score=246.96 Aligned_cols=167 Identities=18% Similarity=0.216 Sum_probs=128.2
Q ss_pred CccccceeEEecCCC--------------------EEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH
Q 048639 272 QLILKGFSLSIPAGK--------------------MVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL 331 (1139)
Q Consensus 272 ~~~l~~is~~i~~g~--------------------~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 331 (1139)
+.+|++|||++++|+ +++|+||||||||||+++|+|+++|++|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999999999999999997653
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChH--HHHHHHHHHH
Q 048639 332 RKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGG--QKQRIAIARA 409 (1139)
Q Consensus 332 ~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgG--qkqRi~lARa 409 (1139)
+ .+|++|++...+.|+.||+.++.+... +. +.++.+. +... ..... |||| ||||++||||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~~~~---~~---------~~L~~~~--L~~~-~~~~~-lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGSTNFP---PD---------TYLEKMK--FYEY-DFFII-ISATRFKKNDIDIAKA 170 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGSSCC---HH---------HHHHHTT--GGGC-SEEEE-EESSCCCHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccchHHH---HH---------HHHHHcC--CCcc-CCeEE-eCCCCccHHHHHHHHH
Confidence 1 288999975446799999887753222 22 2233321 1110 11223 9999 9999999999
Q ss_pred Hcc----------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHc------C----CCeEEEEecCccc--hhc-cCEE
Q 048639 410 IVK----------NPPILLLDEATSALDSESEKLVQEALERAM------Q----GRTVILIAHRMST--IVN-ADMI 463 (1139)
Q Consensus 410 l~~----------~~~illlDEpts~LD~~~~~~i~~~l~~~~------~----~~tvi~itH~~~~--~~~-~d~i 463 (1139)
|.+ +|++++|||||++||+.++..+.+.++++. . ..++++.||.++. ++. ||+|
T Consensus 171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999 999999999999999999988888887652 1 2567788998876 554 6665
No 134
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.86 E-value=4.5e-24 Score=249.86 Aligned_cols=193 Identities=16% Similarity=0.154 Sum_probs=154.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCc---cCCCC-----
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL---NIKDL----- 326 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~---~~~~~----- 326 (1139)
+.++++|+++.|+. +..+|+++ |++.+||+++|+||||||||||+++|+|+.+|+.|.|.++|+ ++.++
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999963 34699999 999999999999999999999999999999999999999998 55432
Q ss_pred CHHHHhcceEEEecC-CCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCC-ccccccCCCCChHHHHH
Q 048639 327 DLKSLRKNIGAVSQE-PSLF-TGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYS-TELGQRGVQLSGGQKQR 403 (1139)
Q Consensus 327 ~~~~~~~~i~~v~Q~-~~l~-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~i~~~g~~LSgGqkqR 403 (1139)
....+++.++||+|+ ..++ ..|+.+|+.+.. +.. .. .+.+ ..+-+...+||||| ||
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~------------~~--~~~~v~~~ld~l~~lS~g~-qr 265 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDF------------RD--RGQHVLLIMDSLTRYAMAQ-RE 265 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHH------------HT--TTCEEEEEEECHHHHHHHH-HH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHH------------Hh--CCCCHHHHHHhHHHHHHHH-HH
Confidence 134578899999995 3333 458888887531 111 00 0111 01123467899999 99
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC-----CC-----eEEEEecCccchhccCEEEEEeCcEEEE
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ-----GR-----TVILIAHRMSTIVNADMIAVVEDGQVTE 473 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-----~~-----tvi~itH~~~~~~~~d~i~~l~~G~i~~ 473 (1139)
++|| +.+|++ |++||+.+...+.+.+.++.+ |+ |++++|||++ ...||++++|.+|+|+.
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence 9999 899998 999999999999999987654 54 9999999999 56699999999999999
Q ss_pred ecChhhhh
Q 048639 474 TGTHHSLL 481 (1139)
Q Consensus 474 ~g~~~~l~ 481 (1139)
+|++.++.
T Consensus 336 ~~~~~~~~ 343 (438)
T 2dpy_A 336 SRRLAEAG 343 (438)
T ss_dssp CHHHHHTT
T ss_pred eCCHHHcc
Confidence 99988764
No 135
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.85 E-value=2.9e-23 Score=235.12 Aligned_cols=131 Identities=18% Similarity=0.214 Sum_probs=109.5
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNI 353 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni 353 (1139)
+++++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+. +....+++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEEe--------------
Confidence 79999999999999999999999999999999999999999999998652 22222344455443
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHH
Q 048639 354 KVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433 (1139)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~ 433 (1139)
| |||+||++|||||..+|++++|||||+. .
T Consensus 224 ------------------------------------g-------gg~~~r~~la~aL~~~p~ilildE~~~~-------e 253 (330)
T 2pt7_A 224 ------------------------------------G-------GNITSADCLKSCLRMRPDRIILGELRSS-------E 253 (330)
T ss_dssp ------------------------------------B-------TTBCHHHHHHHHTTSCCSEEEECCCCST-------H
T ss_pred ------------------------------------C-------CChhHHHHHHHHhhhCCCEEEEcCCChH-------H
Confidence 0 8999999999999999999999999982 2
Q ss_pred HHHHHHHHcCCC-eEEEEecCccchhccCEEEEEeCcE
Q 048639 434 VQEALERAMQGR-TVILIAHRMSTIVNADMIAVVEDGQ 470 (1139)
Q Consensus 434 i~~~l~~~~~~~-tvi~itH~~~~~~~~d~i~~l~~G~ 470 (1139)
+.+.++.+..|+ |+|+++|+++....|||+++|++|+
T Consensus 254 ~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 254 AYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp HHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 455666665654 7999999999767799999998875
No 136
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.84 E-value=9.8e-21 Score=215.31 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=75.4
Q ss_pred CCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEE
Q 048639 395 QLSGGQKQRIAIARAIV---------KNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAV 465 (1139)
Q Consensus 395 ~LSgGqkqRi~lARal~---------~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~ 465 (1139)
.||||||||++|||+|+ .+|+|||||||||+||+..+..+.+.+.++. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998764 79999999 444 8999999
Q ss_pred EeCcEEEEecChhhh
Q 048639 466 VEDGQVTETGTHHSL 480 (1139)
Q Consensus 466 l~~G~i~~~g~~~~l 480 (1139)
|++|++++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999887
No 137
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.83 E-value=3.2e-22 Score=223.24 Aligned_cols=175 Identities=16% Similarity=0.202 Sum_probs=127.3
Q ss_pred ccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC----HHHH--hcceEEEecCCC-CCc-
Q 048639 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD----LKSL--RKNIGAVSQEPS-LFT- 346 (1139)
Q Consensus 275 l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~--~~~i~~v~Q~~~-l~~- 346 (1139)
++++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ +.+|+|++|++. +++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688899999999999999999999999999999999999999999876542 1233 457999999998 765
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCC
Q 048639 347 GSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP--ILLLDEATS 424 (1139)
Q Consensus 347 ~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~--illlDEpts 424 (1139)
.|++||+.++.....+ ...++.+ |..........+|| |||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d------------~~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD------------VVLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCS------------EEEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCc------------chHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 4899999764210000 0012222 22222334455689 999999999999999 99999 999
Q ss_pred CCCHHhHHHHHHHHHHHcCCCeEEEEec---------Cccchhc-cCEEEEEeCcEE
Q 048639 425 ALDSESEKLVQEALERAMQGRTVILIAH---------RMSTIVN-ADMIAVVEDGQV 471 (1139)
Q Consensus 425 ~LD~~~~~~i~~~l~~~~~~~tvi~itH---------~~~~~~~-~d~i~~l~~G~i 471 (1139)
+||+.+.. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99998653 12221 24789999999 2333333 678999998864
No 138
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.82 E-value=8.5e-23 Score=208.00 Aligned_cols=111 Identities=21% Similarity=0.316 Sum_probs=89.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCC---ccEEEECCcccCCCC---hHHHh-hhce----EEccccccccccHHHHhc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFYDPN---EGIILIDGKGIKEYN---LRRLR-SQIG----LVQQEPLLFSCSIRNNIC 983 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~~p~---~G~I~idG~di~~~~---l~~lR-~~i~----~V~Qdp~LF~gTIreNL~ 983 (1139)
++++|||+||||||||+++|.|+|+|. .|.|.+||.++.+++ .+.+| ++++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988887 77888 5799 899999988 222
Q ss_pred cCCCcCCHHHHHHHHHHcCchHHHhh-CCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEE
Q 048639 984 YGNEAASEAEIVEVSKKANIHDFISS-LPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIM 1046 (1139)
Q Consensus 984 ~~~~~~sd~ei~~al~~~~l~~~i~~-lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~IL 1046 (1139)
+ ++++ .+++++++.. +| |+||.++|+ |||||||||+||||++++|+|.
T Consensus 77 -~-----~~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V-----SEEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C-----CHHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C-----Chhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1222 7899999999 99 999999995 9999999999999999999873
No 139
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.82 E-value=3.6e-22 Score=219.62 Aligned_cols=147 Identities=18% Similarity=0.187 Sum_probs=95.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcc-cHHHHHhcCCCCCC---H
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDAD---D 362 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~---~ 362 (1139)
.++|+||||||||||+++|+|+..|++|+|.++|.++... ..++.++|++|++.++.. ||.||+.||..... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 4899999999999999999999999999999999887432 345789999999988865 99999999864221 2
Q ss_pred HHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc
Q 048639 363 EQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442 (1139)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 442 (1139)
+.+.+... .++...+ ...||||||||+++|||++. +++||||+++||+... +.++.+.
T Consensus 81 ~~i~~~~~----~~~~~~~-----------~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~----~~l~~L~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFL-----------KEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL----EFMKHLS 138 (270)
T ss_dssp HHHHHHHH----HHHHHHH-----------HHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH----HHHHHHH
T ss_pred HHHHHHHH----HHHHhhh-----------HHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH----HHHHHHH
Confidence 22322222 1222222 23799999999999999886 9999999999999763 2333333
Q ss_pred CCCeEEEEecCccchh
Q 048639 443 QGRTVILIAHRMSTIV 458 (1139)
Q Consensus 443 ~~~tvi~itH~~~~~~ 458 (1139)
+..++|+|.|+.+.+.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3489999999877663
No 140
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.82 E-value=3.3e-23 Score=232.36 Aligned_cols=176 Identities=13% Similarity=0.161 Sum_probs=133.1
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEE-----------------------EeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQ-----------------------IEPGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 882 ~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~-----------------------I~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
..+.|+++||++.|. |+++++++. +++|+.+||+|+||||||||+++|.|++
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 456799999999993 578887775 8999999999999999999999999999
Q ss_pred cCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccC----CCc-CCHHHHHHHHHHcCchHHHhhCCCC
Q 048639 939 DPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG----NEA-ASEAEIVEVSKKANIHDFISSLPDG 1013 (1139)
Q Consensus 939 ~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~----~~~-~sd~ei~~al~~~~l~~~i~~lp~g 1013 (1139)
+|..|. +++++|+||+++++.|+++|+.+. .+. ...+.+.+.++..+ .|
T Consensus 115 ~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~---------~~ 168 (312)
T 3aez_A 115 ARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVK---------SG 168 (312)
T ss_dssp HTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH---------TT
T ss_pred cccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhC---------CC
Confidence 997663 469999999999988999998753 222 23345555555433 22
Q ss_pred c-cccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecC
Q 048639 1014 Y-DTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHR 1092 (1139)
Q Consensus 1014 l-dt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHr 1092 (1139)
. +..+ ..|||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.+ .. +|+|.|.
T Consensus 169 ~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-----------D~-~I~V~a~ 227 (312)
T 3aez_A 169 SDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-----------DF-SLYVDAR 227 (312)
T ss_dssp CSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-----------SE-EEEEEEC
T ss_pred cccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-----------Cc-EEEEECC
Confidence 2 2333 3699999999999999999999999999999998632 1233322 23 6888888
Q ss_pred chhhhc--CCEEEEEeCCE
Q 048639 1093 LATVIN--SDVIVVMDKGE 1109 (1139)
Q Consensus 1093 l~ti~~--~DrI~vl~~G~ 1109 (1139)
.+.... .+|.+.+.+|+
T Consensus 228 ~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 228 IEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp HHHHHHHHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 776532 56666555543
No 141
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.82 E-value=5.5e-22 Score=221.38 Aligned_cols=176 Identities=15% Similarity=0.208 Sum_probs=125.8
Q ss_pred ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC----hHHH--hhhceEEccccc-cc-c
Q 048639 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN----LRRL--RSQIGLVQQEPL-LF-S 975 (1139)
Q Consensus 904 L~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----l~~l--R~~i~~V~Qdp~-LF-~ 975 (1139)
++++||++++|+.++|||||||||||+++.|.|++.|++|+|.++|.|+.... +..+ |.++++|+|++. ++ .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688999999999999999999999999999999999999999999987653 2344 457999999987 65 4
Q ss_pred ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC--EEEeecccc
Q 048639 976 CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA--IMLLDEATS 1053 (1139)
Q Consensus 976 gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~--ILlLDEaTS 1053 (1139)
.|+++|+.++.....+. ..++.+|+.+. .+..+ ..|| |||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d~---~lldt~gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDV---VLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCSE---EEECCCCCSSC-------CHHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCcc---hHHhcCCCCcc-------hhHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 58999997531100000 01122222111 11222 3488 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEec---------Cchhhhc-CCEEEEEeCCEEE
Q 048639 1054 ALDAESERVIVSALEALNPKSSSCGELASRTTQITVAH---------RLATVIN-SDVIVVMDKGEVV 1111 (1139)
Q Consensus 1054 ~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaH---------rl~ti~~-~DrI~vl~~G~iv 1111 (1139)
++|+.+.. +.+.+. .+ .|+|++|| .++.+.. .+.|.++..|+.+
T Consensus 232 glD~~~~~---~~~~~~----------~g-~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 232 GLNMLPQA---REFNEV----------VG-ITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGHHHH---HHHHHH----------TC-CCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CcCHHHHH---HHHHHh----------cC-CCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 99998653 233321 23 35999999 3333333 6899999999754
No 142
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.82 E-value=4e-20 Score=210.27 Aligned_cols=82 Identities=17% Similarity=0.275 Sum_probs=75.2
Q ss_pred CCChHHHHHHHHHHHhc---------CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCch
Q 048639 1024 QLSGGQKQRIAIARTLL---------KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLA 1094 (1139)
Q Consensus 1024 ~LSgGQrQrlalARALl---------r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ 1094 (1139)
.||||||||++|||+|+ .+|+|||||||||+||+...+.+.+.|++. . .|+|++|| ++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----------~--qt~i~~th-~~ 331 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----------P--QAIVTGTE-LA 331 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----------S--EEEEEESS-CC
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----------C--cEEEEEEe-cc
Confidence 69999999999999999 899999999999999999999999999863 2 56999999 45
Q ss_pred hhhcCCEEEEEeCCEEEEecChhHHh
Q 048639 1095 TVINSDVIVVMDKGEVVEMGSHSTLV 1120 (1139)
Q Consensus 1095 ti~~~DrI~vl~~G~ive~G~~~eLl 1120 (1139)
. .||+|++|++|+|++.|+|+++.
T Consensus 332 ~--~~~~i~~l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 332 P--GAALTLRAQAGRFTPVADEEMQA 355 (359)
T ss_dssp T--TCSEEEEEETTEEEECCCTTTSC
T ss_pred c--cCCEEEEEECCEEEecCCHHHHh
Confidence 4 89999999999999999999873
No 143
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.81 E-value=1.2e-22 Score=227.89 Aligned_cols=143 Identities=16% Similarity=0.211 Sum_probs=113.1
Q ss_pred CCccEEEEeEEEECCCCCCCccccceeEE-----------------------ecCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 253 IDGNIDIRDVCFAYPSRPDQLILKGFSLS-----------------------IPAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 253 ~~~~i~~~~v~~~y~~~~~~~~l~~is~~-----------------------i~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.++.|+++||++.|. |+++++++. +++|+++||+||||||||||+++|.|++
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345699999999993 477877775 8999999999999999999999999999
Q ss_pred CCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCC----CCCCHHHHHHHHHHhcHHHHHHhCCCCC
Q 048639 310 DPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGN----MDADDEQIYNASMMANAHSFISQLPDQY 385 (1139)
Q Consensus 310 ~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~----~~~~~~~~~~~~~~~~~~~~i~~l~~g~ 385 (1139)
+|+.|. .+++||+|++.+++.|++||+.+.. |...+ ...+.+.++.+..|.
T Consensus 115 ~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d--------~~~~~~~L~~l~~~~ 169 (312)
T 3aez_A 115 ARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYN--------RRALMRFVTSVKSGS 169 (312)
T ss_dssp HTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBC--------HHHHHHHHHHHHTTC
T ss_pred cccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHH--------HHHHHHHHHHhCCCc
Confidence 998663 3699999999999889999997532 21111 111223444443333
Q ss_pred CccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 048639 386 STELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428 (1139)
Q Consensus 386 ~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~ 428 (1139)
. ......|||||+||+++|||++.+|+|+|||||++.+|+
T Consensus 170 ~---~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 170 D---YACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp S---CEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred c---cCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 2 223458999999999999999999999999999999986
No 144
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.80 E-value=8.9e-22 Score=216.44 Aligned_cols=147 Identities=17% Similarity=0.177 Sum_probs=96.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccc-cHHHHhccCCCcC---CH
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSC-SIRNNICYGNEAA---SE 991 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~g-TIreNL~~~~~~~---sd 991 (1139)
++|||||||||||||+++|+|+..|++|+|.++|.++.. ...++.+++++|++.++.. |+.||+.++.... ..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999998743 3456789999999988754 9999999875322 12
Q ss_pred HHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhC
Q 048639 992 AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALN 1071 (1139)
Q Consensus 992 ~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~ 1071 (1139)
+.+.+.++ .++...++ ..||||||||+++|||++. +++|||||++||+.. ..+.+.|.+
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~-- 139 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSK-- 139 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHT--
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHh--
Confidence 33444333 33332221 2599999999999999885 999999999999876 444455542
Q ss_pred CCCCCccccCCCeEEEEEecCchhhh
Q 048639 1072 PKSSSCGELASRTTQITVAHRLATVI 1097 (1139)
Q Consensus 1072 ~~~~~~~~~~~~tTvI~IaHrl~ti~ 1097 (1139)
. .++|+|.|+.+++.
T Consensus 140 ----------~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 140 ----------V-VNIIPVIAKADTMT 154 (270)
T ss_dssp ----------T-SEEEEEETTGGGSC
T ss_pred ----------c-CcEEEEEeccccCC
Confidence 2 45999999988764
No 145
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.80 E-value=2.5e-21 Score=219.63 Aligned_cols=173 Identities=16% Similarity=0.207 Sum_probs=127.7
Q ss_pred cceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC----HHHH--hcceEEEecCCC-CCc-c
Q 048639 276 KGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD----LKSL--RKNIGAVSQEPS-LFT-G 347 (1139)
Q Consensus 276 ~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~--~~~i~~v~Q~~~-l~~-~ 347 (1139)
+++||++++|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... +..+ |.+|+|++|++. +++ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578889999999999999999999999999999999999999999876532 1223 467999999987 665 4
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCC
Q 048639 348 SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP--ILLLDEATSA 425 (1139)
Q Consensus 348 ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~--illlDEpts~ 425 (1139)
|++||+.++.....+ . ..++.+ |..........+|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d---------~---~lldt~--Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD---------V---VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCS---------E---EEEECC--CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCH---------H---HHHHhc--CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 899999764210000 0 011222 22222334455688 999999999999999 99999 9999
Q ss_pred CCHHhHHHHHHHHHHHcCCCeEEEEecC---------ccchhc-cCEEEEEeCcE
Q 048639 426 LDSESEKLVQEALERAMQGRTVILIAHR---------MSTIVN-ADMIAVVEDGQ 470 (1139)
Q Consensus 426 LD~~~~~~i~~~l~~~~~~~tvi~itH~---------~~~~~~-~d~i~~l~~G~ 470 (1139)
||+.+... .+.+ ..+.|+|++||. ++.+.. .+.|..+..|+
T Consensus 290 lD~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 290 LNMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp GGGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CCHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 99986531 1211 237899999992 333333 67899998886
No 146
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.80 E-value=9.9e-22 Score=203.91 Aligned_cols=173 Identities=15% Similarity=0.179 Sum_probs=129.7
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHH
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAE 993 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~e 993 (1139)
||+++|+||||||||||+++|.|+++ ++| |.+||.++.+++ .+++++++++|+. .++ +.|+.......+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 79999999999999999999999999 999 999999986543 5789999999986 443 344432110000
Q ss_pred HHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH-HHHH---HhcCCCCEEEeec--cccCCCHHHHHHHHHHH
Q 048639 994 IVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI-AIAR---TLLKRPAIMLLDE--ATSALDAESERVIVSAL 1067 (1139)
Q Consensus 994 i~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl-alAR---ALlr~p~ILlLDE--aTS~LD~~te~~I~~~l 1067 (1139)
+...+.++++.+..+|+|||+++ +++| |++.+|+|||||| ||...|....+.+.+.+
T Consensus 70 -----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 70 -----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp -----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred -----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 11123478888889999999998 5566 7899999999999 89889999988888888
Q ss_pred HhhCCCCCCccccCCCeEEE---EEecCchhhhcCCEEEEEeCCEEEEecChhHHhhccCChHHHHHH
Q 048639 1068 EALNPKSSSCGELASRTTQI---TVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVAESQGVYSRLYQ 1132 (1139)
Q Consensus 1068 ~~~~~~~~~~~~~~~~tTvI---~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~~~~g~f~~l~~ 1132 (1139)
++. .++++ +|+||.+ ....|||..+++|+|++... ++++..|.++.+
T Consensus 133 ~~~------------~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~-----~nr~~~~~~i~~ 182 (189)
T 2i3b_A 133 STP------------GTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVTK-----ENRNHLLPDIVT 182 (189)
T ss_dssp HCS------------SCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECCS-----SSGGGHHHHHHH
T ss_pred hCC------------CcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeCh-----HhHHHHHHHHHH
Confidence 732 23342 4559886 45578999999999988643 123455555543
No 147
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.80 E-value=4.1e-21 Score=217.89 Aligned_cols=175 Identities=15% Similarity=0.213 Sum_probs=126.2
Q ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC----hHHH--hhhceEEccccc-cc-cc
Q 048639 905 NNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN----LRRL--RSQIGLVQQEPL-LF-SC 976 (1139)
Q Consensus 905 ~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----l~~l--R~~i~~V~Qdp~-LF-~g 976 (1139)
+.+||++++|+.++|||+|||||||+++.|.|++.|++|+|.++|.|+.... +..+ |.++++++|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3478889999999999999999999999999999999999999999987642 2333 567999999987 55 56
Q ss_pred cHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC--EEEeeccccC
Q 048639 977 SIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA--IMLLDEATSA 1054 (1139)
Q Consensus 977 TIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~--ILlLDEaTS~ 1054 (1139)
|+++|+.++.....+. ..++.+|+.+. .+..+ ..|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d~---~lldt~Gl~~~-------~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDV---VLCDTSGRLHT-------NYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCSE---EEEECCCCSSC-------CHHHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCHH---HHHHhcCCChh-------hhhHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 8999997542100010 01122222111 11222 3488 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEec---------Cchhhhc-CCEEEEEeCCEEE
Q 048639 1055 LDAESERVIVSALEALNPKSSSCGELASRTTQITVAH---------RLATVIN-SDVIVVMDKGEVV 1111 (1139)
Q Consensus 1055 LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaH---------rl~ti~~-~DrI~vl~~G~iv 1111 (1139)
+|+.+.. +.+.+. .+ .|+|++|| .++.+.. .+.|..+..|+.+
T Consensus 290 lD~~~~~---~~~~~~----------~g-~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 290 LNMLPQA---REFNEV----------VG-ITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp GGGHHHH---HHHHHH----------TC-CCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCHHHHH---HHHHHh----------cC-CeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 9998653 233321 13 35999999 2333333 6899999999753
No 148
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.79 E-value=5.1e-22 Score=210.78 Aligned_cols=175 Identities=13% Similarity=0.138 Sum_probs=107.9
Q ss_pred CccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcc-cHH
Q 048639 272 QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLM 350 (1139)
Q Consensus 272 ~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-ti~ 350 (1139)
.++++| .++++||+++|+||||||||||+++|+|+++. +.+++.....-.....++.++|++|++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 79999999999999999999999999999963 44443211111111235689999999987754 677
Q ss_pred HHHhc-----CC-C--CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH---HHccCCCEEEE
Q 048639 351 DNIKV-----GN-M--DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR---AIVKNPPILLL 419 (1139)
Q Consensus 351 ~ni~~-----g~-~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR---al~~~~~illl 419 (1139)
+|+.. ++ . ....+++.+.+... . +-.+ ..++.|.+.++-..++ ||+.+|++++|
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~---------~---~~~~---~l~~~gl~~~~~~~~~~lS~l~~~p~~~~L 147 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATG---------V---PVLI---EVDLAGARAIKKTMPEAVTVFLAPPSWQDL 147 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHT---------C---CEEE---ECCHHHHHHHHHHCTTSEEEEEECSCHHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcC---------C---eEEE---EeCHHHHHHHHHhcCCcEEEEEECCCHHHH
Confidence 76632 10 0 01122222221111 0 0000 0122333333333333 89999999999
Q ss_pred eCCCCCC----CHHhHHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEe
Q 048639 420 DEATSAL----DSESEKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVE 467 (1139)
Q Consensus 420 DEpts~L----D~~~~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~ 467 (1139)
||||+++ |+..++.+.+.++++. .+.|+|+|||+++.+.. ||+|++|.
T Consensus 148 Dep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 148 QARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 9999998 6778888988888774 37899999999999876 99999984
No 149
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.79 E-value=1.1e-21 Score=208.34 Aligned_cols=169 Identities=15% Similarity=0.122 Sum_probs=108.8
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC-hHHHhhhceEEccccccccc-cH
Q 048639 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN-LRRLRSQIGLVQQEPLLFSC-SI 978 (1139)
Q Consensus 901 ~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~-l~~lR~~i~~V~Qdp~LF~g-TI 978 (1139)
.++++| .+|++||.+||+||||||||||+++|.|+++ .|.+++ ++...+ ....|+.++|++|++.+|.. |+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECC-CEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcc-cccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 368999 7999999999999999999999999999985 355554 222211 12346789999999987753 55
Q ss_pred HHHhccC----C--C--cCCHHHHHHHHHH----------cCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 979 RNNICYG----N--E--AASEAEIVEVSKK----------ANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 979 reNL~~~----~--~--~~sd~ei~~al~~----------~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
++|+.+. . . ..+.+++.+.++. +++.++....|. .|| ||+
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~lS-----------~l~ 139 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----------AVT-----------VFL 139 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----------SEE-----------EEE
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----------cEE-----------EEE
Confidence 5665321 0 0 1223344443333 333333333332 344 899
Q ss_pred CCCCEEEeeccccCC----CHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEe
Q 048639 1041 KRPAIMLLDEATSAL----DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMD 1106 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~L----D~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~ 1106 (1139)
.+|++++|||||+++ |+.+.+.+++.+++.. . ..+.|+|+|+|+++.+.. ||||++|.
T Consensus 140 ~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~-------~-~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 140 APPSWQDLQARLIGRGTETADVIQRRLDTARIELA-------A-QGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp ECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHH-------G-GGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred ECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-------h-hccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999999999998 6778888888887763 1 223459999999999876 99999984
No 150
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.79 E-value=8.2e-23 Score=223.54 Aligned_cols=183 Identities=14% Similarity=0.184 Sum_probs=144.9
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC-ccEEEECCcccCCCChHHHhhhc
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN-EGIILIDGKGIKEYNLRRLRSQI 964 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~-~G~I~idG~di~~~~l~~lR~~i 964 (1139)
++++|+++ + ++|+++| +++|+.++|+||||||||||+++|.|+++|+ +|+|.++|.++..+. +..+
T Consensus 6 ~~l~~l~~--~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~ 72 (261)
T 2eyu_A 6 PEFKKLGL--P-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKK 72 (261)
T ss_dssp CCGGGSSC--C-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSS
T ss_pred CChHHCCC--H-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcc
Confidence 44566664 2 4899999 9999999999999999999999999999998 999999999886543 4557
Q ss_pred eEEcc-----ccccccccHHHHhccCCCcC-------CHHHHHHHHHHcCch----------------HHH---------
Q 048639 965 GLVQQ-----EPLLFSCSIRNNICYGNEAA-------SEAEIVEVSKKANIH----------------DFI--------- 1007 (1139)
Q Consensus 965 ~~V~Q-----dp~LF~gTIreNL~~~~~~~-------sd~ei~~al~~~~l~----------------~~i--------- 1007 (1139)
++++| ++..|..+|+.+|... |+. +.+.++.+++.+.-. +.+
T Consensus 73 ~~v~q~~~gl~~~~l~~~la~aL~~~-p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~ 151 (261)
T 2eyu_A 73 SIVNQREVGEDTKSFADALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQ 151 (261)
T ss_dssp SEEEEEEBTTTBSCHHHHHHHHHHHC-CSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGH
T ss_pred eeeeHHHhCCCHHHHHHHHHHHHhhC-CCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCcccc
Confidence 88999 6667788899998763 443 566666666543210 111
Q ss_pred ----hhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE--EEeeccccCCCHHH---------HHHHHHHHHhhCC
Q 048639 1008 ----SSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAI--MLLDEATSALDAES---------ERVIVSALEALNP 1072 (1139)
Q Consensus 1008 ----~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~I--LlLDEaTS~LD~~t---------e~~I~~~l~~~~~ 1072 (1139)
..+++++++.|++.+..+|+| ||+++||+++.+|+| +|+||+|+++|... +..++++++...
T Consensus 152 ~~~~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~- 228 (261)
T 2eyu_A 152 EQVRIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK- 228 (261)
T ss_dssp HHHHHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHH-
T ss_pred chHHHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH-
Confidence 124568999999999899999 899999999999999 99999999999873 456888887664
Q ss_pred CCCCccccCCCeEEEEEecCch
Q 048639 1073 KSSSCGELASRTTQITVAHRLA 1094 (1139)
Q Consensus 1073 ~~~~~~~~~~~tTvI~IaHrl~ 1094 (1139)
++.| .+.++||++
T Consensus 229 --------~g~t-~~~~a~r~~ 241 (261)
T 2eyu_A 229 --------QGLI-TLEDAMEAS 241 (261)
T ss_dssp --------TTSS-CHHHHHHHC
T ss_pred --------cCCC-CHHHHHHHh
Confidence 4555 789999987
No 151
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.79 E-value=9.9e-21 Score=215.02 Aligned_cols=194 Identities=15% Similarity=0.169 Sum_probs=145.1
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCC-------CC
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKD-------LD 327 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~-------~~ 327 (1139)
..++.+++++.|+. +..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++..+ ..
T Consensus 44 ~~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~ 120 (347)
T 2obl_A 44 DPLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLP 120 (347)
T ss_dssp CSTTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSC
T ss_pred CCeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhh
Confidence 35788999999963 34699999 9999999999999999999999999999999999999998865211 12
Q ss_pred HHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCc-cccccCCCCChHHHHHHHH
Q 048639 328 LKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYST-ELGQRGVQLSGGQKQRIAI 406 (1139)
Q Consensus 328 ~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~i~~~g~~LSgGqkqRi~l 406 (1139)
...+++.+.+++|.+. +. .+++..+.....+.+..... |.+. .+-+...+||+|| ||+++
T Consensus 121 ~~~~~~~v~~~~~~~~----~~------------~~r~~~~~~~~~~ae~~~~~--~~~vl~~ld~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 121 QSTLSKCVLVVTTSDR----PA------------LERMKAAFTATTIAEYFRDQ--GKNVLLMMDSVTRYARAA-RDVGL 181 (347)
T ss_dssp HHHHTTEEEEEECTTS----CH------------HHHHHHHHHHHHHHHHHHTT--TCEEEEEEETHHHHHHHH-HHHHH
T ss_pred hhhhhceEEEEECCCC----CH------------HHHHHHHHHHHHHHHHHHhc--cccHHHHHhhHHHHHHHH-HHHHH
Confidence 2234556777776431 11 12222222222222332221 2221 1124567899999 99999
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc---CCC-----eEEEEecCccchhccCEEEEEeCcEEEEecChh
Q 048639 407 ARAIVKNPPILLLDEATSALDSESEKLVQEALERAM---QGR-----TVILIAHRMSTIVNADMIAVVEDGQVTETGTHH 478 (1139)
Q Consensus 407 ARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~---~~~-----tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 478 (1139)
| +.+|++ |++||+.....+.+.++++. +|. ||+++||+++ -.-||++++|.+|+|+.+|+.+
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~ 251 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELA 251 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHH
Confidence 9 688888 99999999999999998875 366 8999999999 4459999999999999999888
Q ss_pred hh
Q 048639 479 SL 480 (1139)
Q Consensus 479 ~l 480 (1139)
++
T Consensus 252 ~~ 253 (347)
T 2obl_A 252 EE 253 (347)
T ss_dssp TT
T ss_pred Hc
Confidence 76
No 152
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.78 E-value=3.4e-22 Score=230.20 Aligned_cols=175 Identities=14% Similarity=0.202 Sum_probs=143.1
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCC-ccEEEECCcccCCCChHHHhhhceEEcc-----cccccc
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPN-EGIILIDGKGIKEYNLRRLRSQIGLVQQ-----EPLLFS 975 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~-~G~I~idG~di~~~~l~~lR~~i~~V~Q-----dp~LF~ 975 (1139)
++|++++ +++|+.++|+|||||||||++++|.|+++|+ +|+|.++|.++. + .+|.++++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3677776 8999999999999999999999999999998 899988776664 2 36788999999 889999
Q ss_pred ccHHHHhccCCCcC-------CHHHHHHHHHHcCchHH-------------Hh----------------hCCCCcccccc
Q 048639 976 CSIRNNICYGNEAA-------SEAEIVEVSKKANIHDF-------------IS----------------SLPDGYDTVVG 1019 (1139)
Q Consensus 976 gTIreNL~~~~~~~-------sd~ei~~al~~~~l~~~-------------i~----------------~lp~gldt~v~ 1019 (1139)
++|+.||.. +|+. +++.++.+++.++.... ++ .+++++++.|+
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999987 4655 67778888887653211 11 13568999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCE--EEeeccccCCCHH----H-----HHHHHHHHHhhCCCCCCccccCCCeEEEE
Q 048639 1020 EKGCQLSGGQKQRIAIARTLLKRPAI--MLLDEATSALDAE----S-----ERVIVSALEALNPKSSSCGELASRTTQIT 1088 (1139)
Q Consensus 1020 e~G~~LSgGQrQrlalARALlr~p~I--LlLDEaTS~LD~~----t-----e~~I~~~l~~~~~~~~~~~~~~~~tTvI~ 1088 (1139)
+.+..+|+| ||+++||+++.+|+| +|+||+|+++|.. + +..++++++... ++.| .+.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~---------~g~t-~~~ 346 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYK---------QGLI-TLE 346 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTT---------TSSS-CTT
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHH---------CCCC-CHH
Confidence 888888999 899999999999999 9999999999965 3 456888887654 4455 799
Q ss_pred EecCchh
Q 048639 1089 VAHRLAT 1095 (1139)
Q Consensus 1089 IaHrl~t 1095 (1139)
+|||++.
T Consensus 347 ~a~r~~~ 353 (372)
T 2ewv_A 347 DAMEASP 353 (372)
T ss_dssp TTTSSCS
T ss_pred HHHHHcC
Confidence 9999984
No 153
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.78 E-value=7.8e-22 Score=207.55 Aligned_cols=159 Identities=21% Similarity=0.312 Sum_probs=125.7
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhcccc-------------CCccEEEECCcccCCCChHHHhhhceEEcccccccccc
Q 048639 911 IEPGLKVALVGPSGAGKSSVLALLLRFYD-------------PNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCS 977 (1139)
Q Consensus 911 I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gT 977 (1139)
+++|++++|+||||||||||+++|.|+++ |..|+ +||+++..++.+.+|+.+ +|++++|.++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999986 78898 699999999999999876 7999999999
Q ss_pred HHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH-HhcCCCCEEEeeccccCCC
Q 048639 978 IRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR-TLLKRPAIMLLDEATSALD 1056 (1139)
Q Consensus 978 IreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR-ALlr~p~ILlLDEaTS~LD 1056 (1139)
+++|+ +|. ++++++++++.....-+ +-.|+|+++.... ++ .|| +++++|++++|||+|+++|
T Consensus 76 ~~~n~-~g~---~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d 138 (198)
T 1lvg_A 76 FSGNL-YGT---SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRN 138 (198)
T ss_dssp ETTEE-EEE---EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHT
T ss_pred ecCcc-CCC---CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcC
Confidence 99998 663 67889999886433211 1234566554321 12 577 8999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeC
Q 048639 1057 AESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDK 1107 (1139)
Q Consensus 1057 ~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~ 1107 (1139)
.+|++.|++.|.+.. . -+.++| ++ ..+|+|+|+++
T Consensus 139 ~~~e~~i~~~l~~~~---------~----~~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 139 TETEESLAKRLAAAR---------T----DMESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp CSCHHHHHHHHHHHH---------H----HTTGGG--ST-TTCSEEEECSS
T ss_pred CCCHHHHHHHHHHHH---------H----HHHHhh--cc-CCceEEEECCC
Confidence 999999999998654 1 145678 55 78999999885
No 154
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.76 E-value=3.9e-18 Score=194.82 Aligned_cols=77 Identities=29% Similarity=0.393 Sum_probs=68.7
Q ss_pred ccCCCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhccCEE
Q 048639 391 QRGVQLSGGQKQ------RIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVNADMI 463 (1139)
Q Consensus 391 ~~g~~LSgGqkq------Ri~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~i 463 (1139)
.....||||||| |+++|||++.+|++|||||||++||+.....+.+.|+++. +++|+|+|||+.+....||++
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 323 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEE
Confidence 356789999999 6788899999999999999999999999999999998864 478999999998766679999
Q ss_pred EEEe
Q 048639 464 AVVE 467 (1139)
Q Consensus 464 ~~l~ 467 (1139)
++|+
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 155
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.76 E-value=1.3e-20 Score=195.50 Aligned_cols=158 Identities=19% Similarity=0.279 Sum_probs=118.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHH
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQ 364 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~ 364 (1139)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..+++ .+++++||++|+. +++ ++|+..-.....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 78999999999999999999999999 999 999998875443 4688999999986 332 233321000000
Q ss_pred HHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCHHhHHHHHHHH
Q 048639 365 IYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRI-AIAR---AIVKNPPILLLDE--ATSALDSESEKLVQEAL 438 (1139)
Q Consensus 365 ~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi-~lAR---al~~~~~illlDE--pts~LD~~~~~~i~~~l 438 (1139)
+...+..+|+.+..+|||||+++ ++++ |+..+|+++|||| |+..+|....+.+.+.+
T Consensus 70 -----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 70 -----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp -----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred -----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 01123468888999999999999 5566 7899999999999 89889998777777666
Q ss_pred HHHcCCCeEEE--E--ecCccchhccCEEEEEeCcEEEEe
Q 048639 439 ERAMQGRTVIL--I--AHRMSTIVNADMIAVVEDGQVTET 474 (1139)
Q Consensus 439 ~~~~~~~tvi~--i--tH~~~~~~~~d~i~~l~~G~i~~~ 474 (1139)
. ..+|+|+ + +||.+ ...+|+|..+++|+|++-
T Consensus 133 ~---~~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 133 S---TPGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp H---CSSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEEC
T ss_pred h---CCCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEe
Confidence 4 2445554 3 49876 455788888889998864
No 156
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.76 E-value=4.6e-21 Score=195.16 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=87.3
Q ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC---ccEEEECCccCCCCC---HHHHh-cceE----EEecCCCCCcccHHHHHh
Q 048639 286 KMVALVGSSGCGKSTVISLVARFYDPS---NGDILIDSLNIKDLD---LKSLR-KNIG----AVSQEPSLFTGSLMDNIK 354 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~~~g~~~~~~~---~~~~~-~~i~----~v~Q~~~l~~~ti~~ni~ 354 (1139)
++++|+|+||||||||+++|+|+++|+ .|.|.+||.++.+++ .+.+| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 589999999999999999999999998 899999999987775 56777 4788 899999887 221
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEE
Q 048639 355 VGNMDADDEQIYNASMMANAHSFISQ-LPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPIL 417 (1139)
Q Consensus 355 ~g~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~il 417 (1139)
+ . ++. .+++++++.. +| |+||.++|+ |||||||||+||||++++|++.
T Consensus 77 -~----~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 111 6688899999 99 999999995 9999999999999999999874
No 157
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.76 E-value=4.6e-20 Score=209.57 Aligned_cols=198 Identities=13% Similarity=0.171 Sum_probs=145.6
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC-------CCh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE-------YNL 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~-------~~l 957 (1139)
.++.+++++.|.. +..+|+++ |+|.+||++||+|+||||||||+++|.|+.+|+.|.|.++|.+.++ +..
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 5888999999963 34699999 9999999999999999999999999999999999999999975321 112
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCcccc-ccCCCCCCChHHHHHHHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTV-VGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~-v~e~G~~LSgGQrQrlalA 1036 (1139)
..+++.+.+++|.+. ...+++..++....+.++... .|.+.. +-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~----------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA 182 (347)
T ss_dssp HHHTTEEEEEECTTS----------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH
T ss_pred hhhhceEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH
Confidence 223344555554321 112344444444444444322 222211 113346799999 999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCe-----EEEEEecCchhhhcCCEEEEEeCCEEE
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRT-----TQITVAHRLATVINSDVIVVMDKGEVV 1111 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~t-----TvI~IaHrl~ti~~~DrI~vl~~G~iv 1111 (1139)
+.+|++ |+++|+.....+.+.+++... ..+++ ||++++|+++ -.-||++++|.+|+|+
T Consensus 183 ---l~~p~~------t~Gldp~~~~~l~~ller~~~-------~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Iv 245 (347)
T 2obl_A 183 ---SGEPDV------RGGFPPSVFSSLPKLLERAGP-------APKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIV 245 (347)
T ss_dssp ---TTCCCC------BTTBCHHHHHHHHHHHTTCEE-------CSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEE
T ss_pred ---cCCCCc------ccCCCHHHHHHHHHHHHHHhC-------CCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEE
Confidence 688887 999999999999999987541 02244 7999999999 4449999999999999
Q ss_pred EecChhHHhh
Q 048639 1112 EMGSHSTLVA 1121 (1139)
Q Consensus 1112 e~G~~~eLl~ 1121 (1139)
..|+++++..
T Consensus 246 l~~~l~~~~~ 255 (347)
T 2obl_A 246 LTRELAEENH 255 (347)
T ss_dssp BCHHHHTTTC
T ss_pred EeCCHHHcCC
Confidence 9999888753
No 158
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.76 E-value=1.3e-19 Score=198.18 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=101.3
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCC-ccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS-NGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMD 351 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ 351 (1139)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..+++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~---------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR---------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH----------
Confidence 4899999 9999999999999999999999999999998 999999987653221 1122233221
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhH
Q 048639 352 NIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE 431 (1139)
Q Consensus 352 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~ 431 (1139)
+-|++ ..+| |++|||||..+|+++++|||| |+++.
T Consensus 79 ------------------------------~~gl~------~~~l------~~~la~aL~~~p~illlDEp~---D~~~~ 113 (261)
T 2eyu_A 79 ------------------------------EVGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETV 113 (261)
T ss_dssp ------------------------------EBTTT------BSCH------HHHHHHHHHHCCSEEEESCCC---SHHHH
T ss_pred ------------------------------HhCCC------HHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHH
Confidence 00111 1223 899999999999999999999 99886
Q ss_pred HHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeC
Q 048639 432 KLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVED 468 (1139)
Q Consensus 432 ~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~ 468 (1139)
..+. +....|.|+++++|+.+....|||+++|..
T Consensus 114 ~~~l---~~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 114 ETAL---RAAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HHHH---HHHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HHHH---HHHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 5443 334468999999999986666999988854
No 159
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.76 E-value=1.2e-18 Score=210.69 Aligned_cols=78 Identities=24% Similarity=0.345 Sum_probs=72.1
Q ss_pred CCCC-ChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCc
Q 048639 393 GVQL-SGGQKQRIAIARAIVKNP--PILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDG 469 (1139)
Q Consensus 393 g~~L-SgGqkqRi~lARal~~~~--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G 469 (1139)
...| |||||||++|||||+.+| ++|||||||++||+.+...+.+.|+++.+++|||+|||+++.+..||++++|++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 4567 999999999999999999 9999999999999999999999998877789999999999988889999999665
Q ss_pred E
Q 048639 470 Q 470 (1139)
Q Consensus 470 ~ 470 (1139)
.
T Consensus 474 ~ 474 (517)
T 4ad8_A 474 V 474 (517)
T ss_dssp E
T ss_pred c
Confidence 3
No 160
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.76 E-value=6.5e-19 Score=197.84 Aligned_cols=181 Identities=15% Similarity=0.184 Sum_probs=121.6
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCcc-EEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG-DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMD 351 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ 351 (1139)
++|+++++.+++|++++|+||||||||||++.|+|.+.|++| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 489999999999999999999999999999999999999988 77654433 2455566666555554432 2234
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHH-HHHHHHHHHHccCCCEEEEeCCCC---C--
Q 048639 352 NIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQ-KQRIAIARAIVKNPPILLLDEATS---A-- 425 (1139)
Q Consensus 352 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGq-kqRi~lARal~~~~~illlDEpts---~-- 425 (1139)
++..+.. +.++..++ +.+.+...+ -.+.+...++|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~~~--~~~~~~~~-----~~~~l~~~~----l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 97 SLKREII--ENGKFDQW-----FDELFGNDT----FHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHHHH--HHTHHHHH-----HHHHHSSSC----EEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred ccccCCC--CHHHHHHH-----HHHHhccCC----EEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 4433210 11111111 112222221 12334445789999 77777 999999999999999999 4
Q ss_pred -CCH-HhHHHHHHHHHHHc--CCCeEEEEecCc--c--------------------chhc-cCEEEEEeCcEE
Q 048639 426 -LDS-ESEKLVQEALERAM--QGRTVILIAHRM--S--------------------TIVN-ADMIAVVEDGQV 471 (1139)
Q Consensus 426 -LD~-~~~~~i~~~l~~~~--~~~tvi~itH~~--~--------------------~~~~-~d~i~~l~~G~i 471 (1139)
+|. .....+.+.|+++. .++|||++||.. + .+.. ||+|++|++|+.
T Consensus 165 ~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 45567778887764 289999999995 4 5554 999999999875
No 161
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.74 E-value=3.9e-18 Score=218.04 Aligned_cols=171 Identities=13% Similarity=0.148 Sum_probs=123.3
Q ss_pred ccEEEEe-----EEEECCCCCCCccccceeEEecC-------CCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCcc
Q 048639 255 GNIDIRD-----VCFAYPSRPDQLILKGFSLSIPA-------GKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLN 322 (1139)
Q Consensus 255 ~~i~~~~-----v~~~y~~~~~~~~l~~is~~i~~-------g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~ 322 (1139)
+.|+++| +++.|++ +.++++|++|++++ |++++|+||||||||||++.+ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4699999 9999943 34699999999987 999999999999999999999 99863
Q ss_pred CCCCCHHHHhcceE-EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHH
Q 048639 323 IKDLDLKSLRKNIG-AVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQK 401 (1139)
Q Consensus 323 ~~~~~~~~~~~~i~-~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqk 401 (1139)
..++| ||||++. ..|+.|||... . ++.+.+ ..+..++|++++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~r-i--------------g~~d~~-----------~~~~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTR-L--------------GASDRI-----------MSGESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEE-C--------------C--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHH-c--------------CCHHHH-----------hhchhhhHHHHH
Confidence 24666 9999873 45777877421 0 111111 112346788777
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHh-HHHHHHHHHHHc-C-CCeEEEEecCccchhc-cCEEEEEeCcEEE--Eec
Q 048639 402 QRIAIARAIVKNPPILLLDEATSALDSES-EKLVQEALERAM-Q-GRTVILIAHRMSTIVN-ADMIAVVEDGQVT--ETG 475 (1139)
Q Consensus 402 qRi~lARal~~~~~illlDEpts~LD~~~-~~~i~~~l~~~~-~-~~tvi~itH~~~~~~~-~d~i~~l~~G~i~--~~g 475 (1139)
+ +++|++++.+|+++|||||++++|+.. ...+.+.++.+. + ++|+|++||+++.+.. +|++.++ +|++. +.|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 5 999999999999999999999999987 455677777664 3 8999999999999876 8998887 58887 455
Q ss_pred Chh
Q 048639 476 THH 478 (1139)
Q Consensus 476 ~~~ 478 (1139)
+.+
T Consensus 936 ~~~ 938 (1022)
T 2o8b_B 936 ECE 938 (1022)
T ss_dssp ---
T ss_pred Ccc
Confidence 543
No 162
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.73 E-value=2.2e-18 Score=193.56 Aligned_cols=183 Identities=11% Similarity=0.126 Sum_probs=120.7
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc-EEEECCcccCCCChHHHhhhceEEccccccccccHHH
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG-IILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRN 980 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIre 980 (1139)
++|+++++.+++|+.++|+||+|||||||++.|++...|.+| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 489999999999999999999999999999999999998878 77654443 3566777777666655432 2233
Q ss_pred HhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH-HHHHHHHHHhcCCCCEEEeecccc---C--
Q 048639 981 NICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ-KQRIAIARTLLKRPAIMLLDEATS---A-- 1054 (1139)
Q Consensus 981 NL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ-rQrlalARALlr~p~ILlLDEaTS---~-- 1054 (1139)
|+..+ ..++++..++.+. ++...+ + .+.+...++|.+| +||+. |+|+..+|++||+||||+ +
T Consensus 97 ~l~~~--~~~~~~~~~~~~~-----~l~~~~--l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 97 SLKRE--IIENGKFDQWFDE-----LFGNDT--F--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHH--HHHHTHHHHHHHH-----HHSSSC--E--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred ccccC--CCCHHHHHHHHHH-----HhccCC--E--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 44322 1122333333222 111111 1 1222224689999 67776 999999999999999999 4
Q ss_pred -CCH-HHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCc--h--------------------hhh-cCCEEEEEeCCE
Q 048639 1055 -LDA-ESERVIVSALEALNPKSSSCGELASRTTQITVAHRL--A--------------------TVI-NSDVIVVMDKGE 1109 (1139)
Q Consensus 1055 -LD~-~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl--~--------------------ti~-~~DrI~vl~~G~ 1109 (1139)
+|. .....+.+.|+++. . ..++|||+++|.. + .+. .||+|++|++|+
T Consensus 165 ~~d~~~~~~~i~~~L~~la-------~-~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFA-------K-STGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp ----CHHHHHHHHHHHHHH-------H-HHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC-
T ss_pred CCCHHHHHHHHHHHHHHHH-------H-HhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCc
Confidence 444 45566777777653 0 1234599999985 4 454 499999999987
Q ss_pred E
Q 048639 1110 V 1110 (1139)
Q Consensus 1110 i 1110 (1139)
.
T Consensus 237 ~ 237 (296)
T 1cr0_A 237 Q 237 (296)
T ss_dssp -
T ss_pred c
Confidence 5
No 163
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.73 E-value=6.8e-18 Score=215.82 Aligned_cols=174 Identities=16% Similarity=0.162 Sum_probs=122.0
Q ss_pred ccEEEEe-----EEEECCCCCCcccccceeEEEeC-------CcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcc
Q 048639 884 GRIEFQN-----IKFNYPSRPEVTVLNNFSLQIEP-------GLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKG 951 (1139)
Q Consensus 884 g~I~~~n-----vsf~Y~~~~~~~vL~~vsl~I~~-------Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~d 951 (1139)
+.|+++| |++.|+. +.+|++|+||++++ |+.++|+|||||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4699999 9999942 34699999999987 999999999999999999999 99863
Q ss_pred cCCCChHHHhhhce-EEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 952 IKEYNLRRLRSQIG-LVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 952 i~~~~l~~lR~~i~-~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
+.++| +|||++. .-|+.+||.. +.|+.+.+. .+-+.+|++.+
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~---------------rig~~d~~~-----------~~~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFT---------------RLGASDRIM-----------SGESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEE---------------ECC--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHH---------------HcCCHHHHh-----------hchhhhHHHHH
Confidence 35676 9999984 5577777632 122222211 11235777776
Q ss_pred HHHHHHHHhcCCCCEEEeeccccCCCHHH-HHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCC
Q 048639 1031 QRIAIARTLLKRPAIMLLDEATSALDAES-ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKG 1108 (1139)
Q Consensus 1031 QrlalARALlr~p~ILlLDEaTS~LD~~t-e~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G 1108 (1139)
+ +++||+++.+|+++||||||+++|+.. ...+++.|+.+. + ..++|+|++||.++.+.. ||++.|+ +|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~-------~-~~g~~vl~~TH~~el~~~~~d~~~v~-~g 927 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELA-------E-TIKCRTLFSTHYHSLVEDYSQNVAVR-LG 927 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHH-------H-TSCCEEEEECCCHHHHHHTSSCSSEE-EE
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHH-------h-cCCCEEEEEeCCHHHHHHhCCcceee-cC
Confidence 5 999999999999999999999999987 455677777653 0 213459999999998876 8999887 58
Q ss_pred EEE--EecChhH
Q 048639 1109 EVV--EMGSHST 1118 (1139)
Q Consensus 1109 ~iv--e~G~~~e 1118 (1139)
++. +.|++++
T Consensus 928 ~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 928 HMACMVENECED 939 (1022)
T ss_dssp EEEEC-------
T ss_pred eEEEEEecCccc
Confidence 887 5566544
No 164
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.72 E-value=5.7e-18 Score=205.04 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=117.4
Q ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHh-cCC
Q 048639 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIK-VGN 357 (1139)
Q Consensus 279 s~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~-~g~ 357 (1139)
+..+++|++++|+||||||||||++.++|...|. |+ +.+.+++|++. .+++++.. +|.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g~ 333 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWGM 333 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTSC
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcCC
Confidence 4589999999999999999999999999998885 43 12456677752 24555542 221
Q ss_pred CCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH-----hHH
Q 048639 358 MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE-----SEK 432 (1139)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~-----~~~ 432 (1139)
+.+ +.. . .|+.......+..|||||+||+++||++..+|+++|+| ||++||.. ..+
T Consensus 334 ---~~~------------~~~-~--~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 334 ---DFE------------EME-R--QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp ---CHH------------HHH-H--TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred ---CHH------------HHH-h--CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 111 111 1 13333445567889999999999999999999999999 99999998 888
Q ss_pred HHHHHHHHHc-CCCeEEEEecCc----------cchhc-cCEEEEEeCcE
Q 048639 433 LVQEALERAM-QGRTVILIAHRM----------STIVN-ADMIAVVEDGQ 470 (1139)
Q Consensus 433 ~i~~~l~~~~-~~~tvi~itH~~----------~~~~~-~d~i~~l~~G~ 470 (1139)
.+.+.++.+. .|.|+|+++|+. ..+.. ||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 8888877654 589999999998 66665 99999999987
No 165
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.72 E-value=1.1e-19 Score=210.06 Aligned_cols=148 Identities=18% Similarity=0.296 Sum_probs=114.1
Q ss_pred cccceeEEEeC--CcEEEEEcCCCCCHHHHHHHHhccccCCc----cEEEE----CCcccCCCChHHHhhhceEEccccc
Q 048639 903 VLNNFSLQIEP--GLKVALVGPSGAGKSSVLALLLRFYDPNE----GIILI----DGKGIKEYNLRRLRSQIGLVQQEPL 972 (1139)
Q Consensus 903 vL~~vsl~I~~--Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~----G~I~i----dG~di~~~~l~~lR~~i~~V~Qdp~ 972 (1139)
+.+.|+++|++ |++++|+|+||||||||+++|.|+++|++ |+|.+ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999999 99987 46666 5566666 56999999999
Q ss_pred cccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCC--ccc--------cccCCCCCCChHHHHHHHHHHHh---
Q 048639 973 LFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDG--YDT--------VVGEKGCQLSGGQKQRIAIARTL--- 1039 (1139)
Q Consensus 973 LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~g--ldt--------~v~e~G~~LSgGQrQrlalARAL--- 1039 (1139)
+|.+|+++||.+++....+...+..+.......++..++.+ ++. +..++|.++|+||+||++++|+|
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l 314 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKL 314 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHH
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHH
Confidence 99999999999876555566677766666666776665433 333 33366778999999999999999
Q ss_pred cC--CCCEEEeeccc
Q 048639 1040 LK--RPAIMLLDEAT 1052 (1139)
Q Consensus 1040 lr--~p~ILlLDEaT 1052 (1139)
++ +++|+++||||
T Consensus 315 ~~~~~~~ililde~~ 329 (365)
T 1lw7_A 315 LDKYKVPYIEIESPS 329 (365)
T ss_dssp HHGGGCCCEEEECSS
T ss_pred HHHcCCCEEEeCCCC
Confidence 77 89999999997
No 166
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.72 E-value=4.7e-17 Score=185.80 Aligned_cols=79 Identities=27% Similarity=0.375 Sum_probs=67.8
Q ss_pred CCCCChHHHH------HHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchh
Q 048639 1022 GCQLSGGQKQ------RIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLAT 1095 (1139)
Q Consensus 1022 G~~LSgGQrQ------rlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~t 1095 (1139)
...||||||| |+++|||++.+|++|||||||++||+.+...+.+.|++.. ..++|+|+|||+.+.
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~---------~~~~~vi~~sH~~~~ 316 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL---------KKIPQVILVSHDEEL 316 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTG---------GGSSEEEEEESCGGG
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH---------hcCCEEEEEEChHHH
Confidence 3579999999 6788899999999999999999999999999999998764 233469999999876
Q ss_pred hhcCCEEEEEe--CCE
Q 048639 1096 VINSDVIVVMD--KGE 1109 (1139)
Q Consensus 1096 i~~~DrI~vl~--~G~ 1109 (1139)
...||+|++|+ +|.
T Consensus 317 ~~~~d~~~~l~~~~g~ 332 (339)
T 3qkt_A 317 KDAADHVIRISLENGS 332 (339)
T ss_dssp GGGCSEEEEEEEETTE
T ss_pred HHhCCEEEEEEecCCc
Confidence 66699999985 454
No 167
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.71 E-value=1.3e-20 Score=216.93 Aligned_cols=175 Identities=19% Similarity=0.219 Sum_probs=140.2
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCC-ccEEEECCccCCCCCHHHHhcceEEEec-----CCCCCc
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPS-NGDILIDSLNIKDLDLKSLRKNIGAVSQ-----EPSLFT 346 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~v~Q-----~~~l~~ 346 (1139)
++|++++ +++|++++|+||||||||||+++|+|+++|+ +|+|.+.|.++. + .++..++||+| ++..|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3677765 8899999999999999999999999999998 899987776653 2 35678999999 888999
Q ss_pred ccHHHHHhcCCCCC-------CHHHHHHHHHHhcH-----------------HHHH------------HhCCCCCCcccc
Q 048639 347 GSLMDNIKVGNMDA-------DDEQIYNASMMANA-----------------HSFI------------SQLPDQYSTELG 390 (1139)
Q Consensus 347 ~ti~~ni~~g~~~~-------~~~~~~~~~~~~~~-----------------~~~i------------~~l~~g~~t~i~ 390 (1139)
.++++|+.. .|+. +.+.+..+++.+.. ...+ ..+++++++.++
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999997 4543 55666555554431 1111 123567888999
Q ss_pred ccCCCCChHHHHHHHHHHHHccCCCE--EEEeCCCCCCCHH----h-----HHHHHHHHHHHcCCCeEEEEecCccc
Q 048639 391 QRGVQLSGGQKQRIAIARAIVKNPPI--LLLDEATSALDSE----S-----EKLVQEALERAMQGRTVILIAHRMST 456 (1139)
Q Consensus 391 ~~g~~LSgGqkqRi~lARal~~~~~i--lllDEpts~LD~~----~-----~~~i~~~l~~~~~~~tvi~itH~~~~ 456 (1139)
+++..+||| ||+++||+++.+|+| +|+||+|++||.. + +...++.+....+|+|.+.++||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 999999999 899999999999999 9999999999965 2 23566777777789999999999874
No 168
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.71 E-value=1.4e-17 Score=201.09 Aligned_cols=76 Identities=16% Similarity=0.270 Sum_probs=68.9
Q ss_pred CCC-ChHHHHHHHHHHHhcCCC--CEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcC
Q 048639 1023 CQL-SGGQKQRIAIARTLLKRP--AIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS 1099 (1139)
Q Consensus 1023 ~~L-SgGQrQrlalARALlr~p--~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~ 1099 (1139)
..| |||||||++|||||+.+| ++|||||||++||+.+...|.+.|++.. . ++|||+|||+++.+..|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~---------~-~~~vi~itH~~~~~~~~ 464 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA---------D-TRQVLVVTHLAQIAARA 464 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHH---------H-HSEEEEECCCHHHHHHS
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHh---------C-CCEEEEEecCHHHHHhC
Confidence 456 999999999999999999 9999999999999999999999999764 3 34699999999988889
Q ss_pred CEEEEEeCC
Q 048639 1100 DVIVVMDKG 1108 (1139)
Q Consensus 1100 DrI~vl~~G 1108 (1139)
|++++|++|
T Consensus 465 d~~~~~~~~ 473 (517)
T 4ad8_A 465 HHHYKVEKQ 473 (517)
T ss_dssp SEEEEEECC
T ss_pred CEEEEEecc
Confidence 999999554
No 169
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.70 E-value=1.2e-18 Score=189.74 Aligned_cols=167 Identities=10% Similarity=0.110 Sum_probs=106.4
Q ss_pred CcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHH
Q 048639 900 EVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIR 979 (1139)
Q Consensus 900 ~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIr 979 (1139)
+.++|+|+||++++|+.+||+||+|||||||+++|.+++ |.+.+| ..++++++++|+++...-|.+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 457999999999999999999999999999999999987 555554 367889999999754456888
Q ss_pred HHhccCC-------Cc-CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeecc
Q 048639 980 NNICYGN-------EA-ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEA 1051 (1139)
Q Consensus 980 eNL~~~~-------~~-~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEa 1051 (1139)
+|+.+.. +. ...+++.+.++. +.++.+..+ ..||+||+||+++ ++++.+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 8875321 11 233344444443 112344444 3699999999988 688999999999998
Q ss_pred ccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh-hc-CCEEEEEeCCEEEEecChhHHhh
Q 048639 1052 TSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV-IN-SDVIVVMDKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1052 TS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti-~~-~DrI~vl~~G~ive~G~~~eLl~ 1121 (1139)
....|.. +.+. .+ .|++++||....+ +. ++.+ ++|+ +++++++
T Consensus 143 ~~~~~~~--------l~~~----------~~-~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 143 LVFYSQE--------IRDM----------FH-LRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTTSHH--------HHTT----------CS-EEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred cccccHH--------HHHh----------cC-eEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 7777653 3322 22 4599999974434 33 3334 6675 6777764
No 170
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.69 E-value=4.4e-17 Score=161.35 Aligned_cols=82 Identities=28% Similarity=0.389 Sum_probs=72.0
Q ss_pred cccCCCCChHHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc-CCCeEEEEecCccchhccCE
Q 048639 390 GQRGVQLSGGQKQRIAIA------RAIVKNPPILLLDEATSALDSESEKLVQEALERAM-QGRTVILIAHRMSTIVNADM 462 (1139)
Q Consensus 390 ~~~g~~LSgGqkqRi~lA------Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~~~~d~ 462 (1139)
...+.+||||||||++|| |||+.+|+++||||||++||+.+...+.+.+.++. +++|+|+|||+++....||+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ 131 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADH 131 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSE
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCE
Confidence 356789999999999876 99999999999999999999999999999998864 47899999999965556999
Q ss_pred EEEE--eCcEE
Q 048639 463 IAVV--EDGQV 471 (1139)
Q Consensus 463 i~~l--~~G~i 471 (1139)
+++| ++|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 45643
No 171
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.68 E-value=3.4e-19 Score=189.65 Aligned_cols=142 Identities=12% Similarity=0.137 Sum_probs=108.8
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccc---cHHHHhcc--C
Q 048639 911 IEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSC---SIRNNICY--G 985 (1139)
Q Consensus 911 I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~g---TIreNL~~--~ 985 (1139)
.++|+++||+|+||||||||+++|.|++.| ++++|+||+++++. |+++|+.+ +
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999875 58999999998854 56666543 3
Q ss_pred CC-cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH----HHHHHHHHHhcCCCCEEEeeccccC------
Q 048639 986 NE-AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ----KQRIAIARTLLKRPAIMLLDEATSA------ 1054 (1139)
Q Consensus 986 ~~-~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ----rQrlalARALlr~p~ILlLDEaTS~------ 1054 (1139)
.+ ....+.+.++++..++.+.+.. | +..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~----------~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P----------VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C----------CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C----------cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 33 2345678888877766554433 2 23466664 5799999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCc
Q 048639 1055 -LDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL 1093 (1139)
Q Consensus 1055 -LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl 1093 (1139)
||+.++..+++.+++.. ...+. |++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~-------~~~g~-t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDV-------LERGR-SLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHH-------HHSCC-CHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHH-------HHhCC-CHHHHHHHH
Confidence 99999999999987642 00233 488899984
No 172
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.68 E-value=8.5e-17 Score=190.11 Aligned_cols=74 Identities=26% Similarity=0.353 Sum_probs=67.7
Q ss_pred CCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEEEecCccchhccCEEEEEe
Q 048639 394 VQLSGGQKQRIAIARAIV----KNPPILLLDEATSALDSESEKLVQEALERAMQ-GRTVILIAHRMSTIVNADMIAVVE 467 (1139)
Q Consensus 394 ~~LSgGqkqRi~lARal~----~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~~~~~d~i~~l~ 467 (1139)
..||||||||++||++|+ .+|+++||||||++||+.....+.+.+....+ +.++|+|||+...+..||+++++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 359999999999999998 68999999999999999999999999988753 789999999988777899999986
No 173
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.68 E-value=1.7e-17 Score=205.96 Aligned_cols=159 Identities=18% Similarity=0.238 Sum_probs=118.3
Q ss_pred CccEEEEeEEEECCCC--CCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC-CCccEEEECCccCCCCCHHH
Q 048639 254 DGNIDIRDVCFAYPSR--PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-PSNGDILIDSLNIKDLDLKS 330 (1139)
Q Consensus 254 ~~~i~~~~v~~~y~~~--~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-~~~G~i~~~g~~~~~~~~~~ 330 (1139)
.+.|++++. ++|-- .+.++++|+||+ |++++|+||||||||||+++++|+.. ++.|.+.- .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-----------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-----------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-----------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-----------h
Confidence 456888887 44431 235799999999 99999999999999999999999874 67776521 1
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 331 LRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 331 ~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
.+..+++++| +|.. ++.||+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 1456888877 4443 56665432 268999999999999
Q ss_pred H--ccCCCEEEEeCC---CCCCCHHhH-HHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEe
Q 048639 410 I--VKNPPILLLDEA---TSALDSESE-KLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTET 474 (1139)
Q Consensus 410 l--~~~~~illlDEp---ts~LD~~~~-~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 474 (1139)
+ +.+|+++||||| |++||+.+. ..+.+.+.+ .++|+|++||+.+....+ .-.+.++++...
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEEEE
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEEEE
Confidence 9 999999999999 999999875 568888866 589999999998876555 223445555443
No 174
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.68 E-value=1.7e-16 Score=200.17 Aligned_cols=168 Identities=17% Similarity=0.151 Sum_probs=118.8
Q ss_pred ccEEEEeEEEECCCC--CCCccccceeEEecCCCEEEEECCCCCcHHHHHHHH--------HhccCCCccEEEECCccCC
Q 048639 255 GNIDIRDVCFAYPSR--PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLV--------ARFYDPSNGDILIDSLNIK 324 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~--~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l--------~g~~~~~~G~i~~~g~~~~ 324 (1139)
+.+++++...-+-.. .+..+++|++|++++|++++|+|||||||||+++.+ .|.+.|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 358888764433111 134689999999999999999999999999999999 55444433221
Q ss_pred CCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHH
Q 048639 325 DLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRI 404 (1139)
Q Consensus 325 ~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi 404 (1139)
++.+. .+|. .+|. .+. ....+|+|++++.
T Consensus 702 ----------~~~~d---~i~~-------~ig~-----------------~d~--------------l~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVGA-----------------GDS--------------QLKGVSTFMAEML 730 (934)
T ss_dssp ----------EECCS---EEEE-------ECC----------------------------------------CHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcCc-----------------hhh--------------HHHhHhhhHHHHH
Confidence 11100 0000 0110 000 0125788888888
Q ss_pred HHHHHH--ccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHc--CCCeEEEEecCccchhccCEEEEEeCcEEEEecChhh
Q 048639 405 AIARAI--VKNPPILLLDEATSALDSESEKLV-QEALERAM--QGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHS 479 (1139)
Q Consensus 405 ~lARal--~~~~~illlDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 479 (1139)
.+|+++ +.+|+++||||||+++|+.....+ ...++.+. .|+|+|++||+.+....||++..+++|++...++.++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 999999999999999999877666 55555543 3899999999988777899999999999998888776
Q ss_pred hh
Q 048639 480 LL 481 (1139)
Q Consensus 480 l~ 481 (1139)
+.
T Consensus 811 l~ 812 (934)
T 3thx_A 811 LT 812 (934)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 175
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.68 E-value=9.7e-17 Score=158.86 Aligned_cols=89 Identities=24% Similarity=0.312 Sum_probs=73.5
Q ss_pred Cccccc-----cCCCCCCChHHHHHHHHH------HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccC
Q 048639 1013 GYDTVV-----GEKGCQLSGGQKQRIAIA------RTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELA 1081 (1139)
Q Consensus 1013 gldt~v-----~e~G~~LSgGQrQrlalA------RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~ 1081 (1139)
+++..+ .....+||||||||++|| |||+.+|++|+|||||++||+++...+.+.|++.. .
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---------~ 111 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL---------K 111 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTG---------G
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHH---------c
Confidence 555554 234578999999999876 99999999999999999999999999999999764 2
Q ss_pred CCeEEEEEecCchhhhcCCEEEEE--eCCEE
Q 048639 1082 SRTTQITVAHRLATVINSDVIVVM--DKGEV 1110 (1139)
Q Consensus 1082 ~~tTvI~IaHrl~ti~~~DrI~vl--~~G~i 1110 (1139)
+++|+|+|||+++....||+|++| ++|..
T Consensus 112 ~~~tiiivsH~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 112 KIPQVILVSHDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp GSSEEEEEESCGGGGGGCSEEEEEEEETTEE
T ss_pred cCCEEEEEEChHHHHHhCCEEEEEEcCCCeE
Confidence 344699999999655569999999 56643
No 176
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.67 E-value=1.3e-17 Score=179.99 Aligned_cols=148 Identities=20% Similarity=0.238 Sum_probs=102.5
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhccCC-------CccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFYDP-------SNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNI 353 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-------~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni 353 (1139)
-+++|++++|+||||||||||++.|+|.+.| ..|.+++++.+.. + ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--C----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--C----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999997665 4457888876521 1 2357788888888777999998
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH-------ccCCCEEEEeCCCCCC
Q 048639 354 KVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI-------VKNPPILLLDEATSAL 426 (1139)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal-------~~~~~illlDEpts~L 426 (1139)
.+.......+ |++++..++++ ..+|+++++||||+.+
T Consensus 95 ~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 95 YVARAFNSNH------------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp EEEECCSHHH------------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred EEEecCChHH------------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 8754322111 11112222222 3589999999999999
Q ss_pred CHH-------hH-----HHHHHHHHHHc--CCCeEEEEecCcc----chhc-cCEEEEEeCcE
Q 048639 427 DSE-------SE-----KLVQEALERAM--QGRTVILIAHRMS----TIVN-ADMIAVVEDGQ 470 (1139)
Q Consensus 427 D~~-------~~-----~~i~~~l~~~~--~~~tvi~itH~~~----~~~~-~d~i~~l~~G~ 470 (1139)
|++ .+ ..+.+.+.++. .|+|+|++||..+ .+.. ||++++|++|+
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 984 21 24555555543 3899999999544 4765 99999998753
No 177
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.67 E-value=6.5e-18 Score=192.95 Aligned_cols=168 Identities=18% Similarity=0.142 Sum_probs=119.4
Q ss_pred cccce-eEEEeCCcEEEEEcCCCCCHHHHHHHHhccc--cCCc----cE-EEECCcccCCCChHHHhhhceEEccccccc
Q 048639 903 VLNNF-SLQIEPGLKVALVGPSGAGKSSVLALLLRFY--DPNE----GI-ILIDGKGIKEYNLRRLRSQIGLVQQEPLLF 974 (1139)
Q Consensus 903 vL~~v-sl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~--~p~~----G~-I~idG~di~~~~l~~lR~~i~~V~Qdp~LF 974 (1139)
.|+.+ ++.|++|+.++|+||+|||||||++.+++.+ +|++ |+ |+||+.+.- .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 46665 6899999999999999999999999999998 6666 68 999998752 357889999999988
Q ss_pred cccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc-------CCCCEEE
Q 048639 975 SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL-------KRPAIML 1047 (1139)
Q Consensus 975 ~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl-------r~p~ILl 1047 (1139)
..++.+|+.+... .+ |.+|+|++.++++++ .+|++||
T Consensus 193 ~~~v~~ni~~~~~-~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 193 PDEVLKHIYVARA-FN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HHHHGGGEEEEEC-CS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HHHHhhCEEEEec-CC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 8899999877532 11 346777777777777 6899999
Q ss_pred eeccccCCCHHH-------H-----HHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhc-CCEEEEEeCCEEEEec
Q 048639 1048 LDEATSALDAES-------E-----RVIVSALEALNPKSSSCGELASRTTQITVAHRLATVIN-SDVIVVMDKGEVVEMG 1114 (1139)
Q Consensus 1048 LDEaTS~LD~~t-------e-----~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~vl~~G~ive~G 1114 (1139)
+||||+.+|++. + ..+.+.|++.. ...++|||+++|....... ++.+.+...|++++++
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la--------~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~ 308 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLA--------NLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHS 308 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHH--------HHTTCEEEEEEECC---------------CCCCCTT
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHH--------HHcCcEEEEEcccccccccccCCccccCCcceEeec
Confidence 999999999863 1 23334444332 0224569999998775542 3456778889999888
Q ss_pred ChhHHh
Q 048639 1115 SHSTLV 1120 (1139)
Q Consensus 1115 ~~~eLl 1120 (1139)
++..|.
T Consensus 309 ~~~rL~ 314 (349)
T 1pzn_A 309 ATLRVY 314 (349)
T ss_dssp CSEEEE
T ss_pred CcEEEE
Confidence 877774
No 178
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.67 E-value=2.1e-16 Score=186.71 Aligned_cols=74 Identities=24% Similarity=0.296 Sum_probs=66.8
Q ss_pred CCChHHHHHHHHHHHhc----CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcC
Q 048639 1024 QLSGGQKQRIAIARTLL----KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS 1099 (1139)
Q Consensus 1024 ~LSgGQrQrlalARALl----r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~ 1099 (1139)
.||||||||++|||+|+ ++|++||||||||+||+.....+.+.|++.. .+++++|+|||+...+..|
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~---------~~~~~~ii~th~~~~~~~~ 403 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR---------NPDLQFIVISLKNTMFEKS 403 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC---------BTTBEEEEECSCHHHHTTC
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHh---------cCCCEEEEEECCHHHHHhC
Confidence 49999999999999999 6899999999999999999999999998764 2345699999998888889
Q ss_pred CEEEEEe
Q 048639 1100 DVIVVMD 1106 (1139)
Q Consensus 1100 DrI~vl~ 1106 (1139)
|+++++.
T Consensus 404 d~~~~~~ 410 (430)
T 1w1w_A 404 DALVGVY 410 (430)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999986
No 179
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.67 E-value=6.5e-18 Score=192.92 Aligned_cols=166 Identities=19% Similarity=0.181 Sum_probs=118.2
Q ss_pred ccccce-eEEecCCCEEEEECCCCCcHHHHHHHHHhcc--CCCc----cE-EEECCccCCCCCHHHHhcceEEEecCCCC
Q 048639 273 LILKGF-SLSIPAGKMVALVGSSGCGKSTVISLVARFY--DPSN----GD-ILIDSLNIKDLDLKSLRKNIGAVSQEPSL 344 (1139)
Q Consensus 273 ~~l~~i-s~~i~~g~~~~ivG~sGsGKSTll~~l~g~~--~~~~----G~-i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l 344 (1139)
+.|+++ ++.+++|++++|+||||||||||++.+++.+ +|++ |+ |++++.+.. .++++++++|++.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 367776 6899999999999999999999999999998 6766 67 899987642 24578899999988
Q ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc-------cCCCEE
Q 048639 345 FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV-------KNPPIL 417 (1139)
Q Consensus 345 ~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~-------~~~~il 417 (1139)
+..++.+||.+.... . |++|+|++.++++++ .+|+++
T Consensus 192 ~~~~v~~ni~~~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 192 DPDEVLKHIYVARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp CHHHHGGGEEEEECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred CHHHHhhCEEEEecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 888999999876421 1 345666666666666 789999
Q ss_pred EEeCCCCCCCHHh------------HHHHHHHHHHHc--CCCeEEEEecCccchhc-cCEEEEEeCcEEEEecChhhh
Q 048639 418 LLDEATSALDSES------------EKLVQEALERAM--QGRTVILIAHRMSTIVN-ADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 418 llDEpts~LD~~~------------~~~i~~~l~~~~--~~~tvi~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 480 (1139)
|+||||+.+|++. ...+...|.++. .++|+|+++|....... ++.+.+...|++++++.+..+
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEE
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEE
Confidence 9999999999862 234444455443 48899999998765542 344667778888777766555
No 180
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.67 E-value=2.5e-18 Score=187.35 Aligned_cols=166 Identities=11% Similarity=0.110 Sum_probs=104.0
Q ss_pred CCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHH
Q 048639 271 DQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLM 350 (1139)
Q Consensus 271 ~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~ 350 (1139)
++++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|++.....|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 456999999999999999999999999999999999987 555544 356789999999743345899
Q ss_pred HHHhcCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCC
Q 048639 351 DNIKVGNMD--------ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEA 422 (1139)
Q Consensus 351 ~ni~~g~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEp 422 (1139)
+|+.+.... ...+.+. +.++.+..+.+ .....||+||+||+++ +++..+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~L~~l~~~~~----~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMH---------RTLKNIVEGKT----VEVPTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHH---------HHHHHHHTTCC----EEECCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHH---------HHHHHHHCCCC----eecccccccccCccCc-eEEecCCCEEEEeCc
Confidence 987653211 1111111 22222222222 2446899999999988 688999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccch-hc-cCEEEEEeCcEEEEecChhhhh
Q 048639 423 TSALDSESEKLVQEALERAMQGRTVILIAHRMSTI-VN-ADMIAVVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 423 ts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~-~~-~d~i~~l~~G~i~~~g~~~~l~ 481 (1139)
....|.. + .++ .+.|++++||+...+ +. ++.+ ++|+ +.+++.
T Consensus 143 ~~~~~~~----l----~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 143 LVFYSQE----I----RDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp TTTTSHH----H----HTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred cccccHH----H----HHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence 8877764 1 122 378999999974433 33 4434 6664 455554
No 181
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.67 E-value=4.9e-18 Score=180.38 Aligned_cols=169 Identities=21% Similarity=0.267 Sum_probs=108.3
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccc-----cCCccEEEE-------CCccc-
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFY-----DPNEGIILI-------DGKGI- 952 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~-----~p~~G~I~i-------dG~di- 952 (1139)
|+++|++|+|+ .++|++ |.+++|++++|+|++|||||||++.|.|.. .|+.|.+.+ ++..+
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 257888 899999999999999999999999999998 788887754 22222
Q ss_pred --CCCC--------hHHHhhhceEEccccccccc-cHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCC
Q 048639 953 --KEYN--------LRRLRSQIGLVQQEPLLFSC-SIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEK 1021 (1139)
Q Consensus 953 --~~~~--------l~~lR~~i~~V~Qdp~LF~g-TIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~ 1021 (1139)
.... .+.+++.++.+.|++..+++ ++..|+..+. ...++++.+.++..++ |. -.++..
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~-~~~~~~~~~~~~~~~~-------~~---~~v~nK 146 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPL-KDLDQQMIEWAVDSNI-------AV---LVLLTK 146 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCC-CHHHHHHHHHHHHTTC-------CE---EEEEEC
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCC-chhHHHHHHHHHHcCC-------Ce---EEEEec
Confidence 2111 13456667777775443333 3344444321 1123345555544332 21 113444
Q ss_pred CCCCChHHHHH-HHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhC
Q 048639 1022 GCQLSGGQKQR-IAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALN 1071 (1139)
Q Consensus 1022 G~~LSgGQrQr-lalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~ 1071 (1139)
...+|+||||| +..+|+++++|+++++|||||++|......+.+.|.+..
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 45799999999 899999999999999999999999999999999998765
No 182
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.66 E-value=8.7e-19 Score=202.55 Aligned_cols=175 Identities=15% Similarity=0.121 Sum_probs=119.7
Q ss_pred cccceeEEecC--CCEEEEECCCCCcHHHHHHHHHhccCCCc----cEEEE----CCccCCCCCHHHHhcceEEEecCCC
Q 048639 274 ILKGFSLSIPA--GKMVALVGSSGCGKSTVISLVARFYDPSN----GDILI----DSLNIKDLDLKSLRKNIGAVSQEPS 343 (1139)
Q Consensus 274 ~l~~is~~i~~--g~~~~ivG~sGsGKSTll~~l~g~~~~~~----G~i~~----~g~~~~~~~~~~~~~~i~~v~Q~~~ 343 (1139)
+.+.|++++++ |++++|+||||||||||+++|+|+++|++ |+|.+ +|.++ ..+..++ .+|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999999 99887 35555 4444455 56999999998
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc-cCCCEEEEeC-
Q 048639 344 LFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV-KNPPILLLDE- 421 (1139)
Q Consensus 344 l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~-~~~~illlDE- 421 (1139)
+|..|++|||.++..+..+.... .+|+|++||..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~----------------------------~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAF----------------------------CIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHH----------------------------HHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred HHHHhccCCEEEEeCCchHHHHH----------------------------HHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 89999999999875432111111 23455566777777664 4778888887
Q ss_pred --CC------CCCCHHhHHHHHHHHHHHcC--CCeEEEEecCccchhccCEEEEEeCcEEEEecChhhh
Q 048639 422 --AT------SALDSESEKLVQEALERAMQ--GRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 422 --pt------s~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 480 (1139)
|+ +++|+..+..+.+.+.++.+ +.++|+++|.-..-+.+|++.++++ +...|+.++|
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~ 353 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISEL 353 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSC
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHh
Confidence 54 46777777777777765533 6777777765222223565555543 3344444444
No 183
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.66 E-value=2.2e-17 Score=180.42 Aligned_cols=181 Identities=14% Similarity=0.101 Sum_probs=112.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHh--ccccCCccEEEECCcccCCCChHHHhhh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLL--RFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~--rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
+++++++..|+.-+ .+|.+ .|++||.++|+||||||||||+++|+ ++.++.+|.+.+++.+... .....+++
T Consensus 7 ~~~~~i~tg~~~lD--~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIPGFD--ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCTTTG--GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCHhHH--HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 55667777665321 23443 79999999999999999999999999 7756778888888754321 22334567
Q ss_pred ceEEcccccccc-ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 048639 964 IGLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR 1042 (1139)
Q Consensus 964 i~~V~Qdp~LF~-gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~ 1042 (1139)
+++++|++..+. -++.++...... ....+.... . ...+.++.+....+..-..+
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------------------~----~~~~~~~~~~~~~~~l~~~~ 135 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVG-LPSEEKFVL--------------------E----DRFNVDNFLRYIYRVVKAIN 135 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC--------------------------------------------CCHHHHHHHHHHHHHHTT
T ss_pred cCCChHHHhhcCCEEEEEccccccc-cccccceec--------------------c----CcccHHHHHHHHHHHHHhhC
Confidence 899999865432 133333221100 000000000 0 01234454444444444579
Q ss_pred CCEEEeeccccCCC-----HHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh----------hcC-CEEEEEe
Q 048639 1043 PAIMLLDEATSALD-----AESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV----------INS-DVIVVMD 1106 (1139)
Q Consensus 1043 p~ILlLDEaTS~LD-----~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti----------~~~-DrI~vl~ 1106 (1139)
|++|+|||||+.+| +...+.+.+.++... ..++|+|+++|.++.+ ..| |+|++|+
T Consensus 136 p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~---------~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 136 AKRLVIDSIPSIALRLEEERKIREVLLKLNTILL---------EMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp CSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHH---------HHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred CCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHH---------HCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 99999999999998 667777888887654 2345699999999886 347 9999995
No 184
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.66 E-value=2.9e-18 Score=187.53 Aligned_cols=179 Identities=15% Similarity=0.103 Sum_probs=110.2
Q ss_pred EEEEeEEEECCCCCCCccccceeE--EecCCCEEEEECCCCCcHHHHHHHHH--hccCCCccEEEECCccCCCCCHHHHh
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSL--SIPAGKMVALVGSSGCGKSTVISLVA--RFYDPSNGDILIDSLNIKDLDLKSLR 332 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~--~i~~g~~~~ivG~sGsGKSTll~~l~--g~~~~~~G~i~~~g~~~~~~~~~~~~ 332 (1139)
+++++++..++ .|+++ + .+++|++++|+||||||||||+++|+ |..++.+|.+.+++.+... ......
T Consensus 7 ~~~~~i~tg~~------~lD~~-l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 78 (251)
T 2ehv_A 7 QPVRRVKSGIP------GFDEL-IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREM 78 (251)
T ss_dssp -CCCEECCSCT------TTGGG-TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHH
T ss_pred cccceeecCCH------hHHHH-hcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHH
Confidence 45556665554 34443 2 78999999999999999999999999 7756778888887754211 122334
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 333 KNIGAVSQEPSLFT-GSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 333 ~~i~~v~Q~~~l~~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
+.+++++|++..+. .++.++....... .... .. . .....+-++.++...+..-.
T Consensus 79 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~--~~-~------------~~~~~~~~~~~~~~~~~l~~ 133 (251)
T 2ehv_A 79 ASFGWDFEKYEKEGKIAIVDGVSSVVGL----------PSEE--KF-V------------LEDRFNVDNFLRYIYRVVKA 133 (251)
T ss_dssp HTTTCCHHHHHHTTSEEEEC--------------------------------------------CCHHHHHHHHHHHHHH
T ss_pred HHcCCChHHHhhcCCEEEEEcccccccc----------cccc--ce-e------------ccCcccHHHHHHHHHHHHHh
Confidence 56888888754332 1333332211000 0000 00 0 00112344444444444445
Q ss_pred cCCCEEEEeCCCCCCC-----HHhHHHHHHHHHHHc-CCCeEEEEecCccch---------h-cc-CEEEEEeC
Q 048639 412 KNPPILLLDEATSALD-----SESEKLVQEALERAM-QGRTVILIAHRMSTI---------V-NA-DMIAVVED 468 (1139)
Q Consensus 412 ~~~~illlDEpts~LD-----~~~~~~i~~~l~~~~-~~~tvi~itH~~~~~---------~-~~-d~i~~l~~ 468 (1139)
.+|++++|||||+++| +...+.+.+.++.+. .|+|+|++||+++.+ . .| |+|++|++
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 7999999999999997 556666777777664 489999999999886 3 47 99999963
No 185
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.65 E-value=1e-19 Score=191.28 Aligned_cols=158 Identities=16% Similarity=0.227 Sum_probs=116.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccC-------------CCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccH
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYD-------------PSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSL 349 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~-------------~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti 349 (1139)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+.+.+++.+ +|+++++++++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999986 78897 589998888888888776 79999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH-HHccCCCEEEEeCCCCCCCH
Q 048639 350 MDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR-AIVKNPPILLLDEATSALDS 428 (1139)
Q Consensus 350 ~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR-al~~~~~illlDEpts~LD~ 428 (1139)
.+|+ +|. +.+++.++++..... .....|+|+++.... ++ .|| +++.+|++++|||+|+++|.
T Consensus 77 ~~n~-~g~---~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 77 SGNL-YGT---SKEAVRAVQAMNRIC-VLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp TTEE-EEE---EHHHHHHHHHTTCEE-EEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred cCcc-CCC---CHHHHHHHHHcCCcE-EEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 9998 664 456666666432110 001112233332211 22 567 88999999999999999999
Q ss_pred HhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeC
Q 048639 429 ESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVED 468 (1139)
Q Consensus 429 ~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~ 468 (1139)
++++.|.+.|....++ +.++| +. ..+|+|+++++
T Consensus 140 ~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp SCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 9999999988776543 34567 33 67999988874
No 186
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.65 E-value=2.5e-18 Score=210.49 Aligned_cols=190 Identities=14% Similarity=0.271 Sum_probs=122.1
Q ss_pred cEEEEeEEEECCCCCCCccccce----------eEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-CccEEEECCccCC
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGF----------SLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-SNGDILIDSLNIK 324 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~i----------s~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-~~G~i~~~g~~~~ 324 (1139)
.++++|+++.|+.. .+++|+.+ +++++. ++|+||||||||||+++|+|++.| ++|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 57899999999632 23455555 366765 999999999999999999999988 8999999999863
Q ss_pred C---CCHHHHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHH
Q 048639 325 D---LDLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQ 400 (1139)
Q Consensus 325 ~---~~~~~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGq 400 (1139)
. -....+++.++|++|++.+++. ||++||.++. +.+..... .+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------------~~~~~~~~-----------~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------------NAIAGEGM-----------GIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------------HHHHCSSS-----------CCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------------HHhcCCcc-----------ccc---
Confidence 2 1234578899999999988764 9999986421 01111111 111
Q ss_pred HHHHHHHHHHccCCCEEEEeCC------CCCCCHHhHHHHHHHHHHHc-C--CCeEEEEecCccchh--------c----
Q 048639 401 KQRIAIARAIVKNPPILLLDEA------TSALDSESEKLVQEALERAM-Q--GRTVILIAHRMSTIV--------N---- 459 (1139)
Q Consensus 401 kqRi~lARal~~~~~illlDEp------ts~LD~~~~~~i~~~l~~~~-~--~~tvi~itH~~~~~~--------~---- 459 (1139)
++++.++.+...+|+++++||| |++||+.....+.+.++.+. + +.++++++|+++... .
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 2334455555678999999999 99999999999999998853 2 467888999987431 1
Q ss_pred -cCEEEEEeCcEEEEecChhhhh
Q 048639 460 -ADMIAVVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 460 -~d~i~~l~~G~i~~~g~~~~l~ 481 (1139)
...|.|+.++.++..|+.+++.
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCCC
T ss_pred CCceEEEecchhhcCcccHHHHH
Confidence 3568899999888888766553
No 187
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.65 E-value=9.4e-19 Score=200.99 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=115.5
Q ss_pred EEEeEEEE---CCCCCCcccc---------cceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC
Q 048639 887 EFQNIKFN---YPSRPEVTVL---------NNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE 954 (1139)
Q Consensus 887 ~~~nvsf~---Y~~~~~~~vL---------~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~ 954 (1139)
+|+||+|+ |+.. +.++| +++||.|++|+.++|+||||||||||+++|.|+++|++|.|.++|. .+
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PE 213 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cc
Confidence 89999999 8632 23466 9999999999999999999999999999999999999999999985 45
Q ss_pred CChHHHhhhceEEc-ccccc---ccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHH
Q 048639 955 YNLRRLRSQIGLVQ-QEPLL---FSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQK 1030 (1139)
Q Consensus 955 ~~l~~lR~~i~~V~-Qdp~L---F~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQr 1030 (1139)
+.+..+|+++++++ |++.+ +..|+++||..+....+|..+...++.+.+++++..+|.|++|.+++.+.+-..+..
T Consensus 214 ~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~ 293 (361)
T 2gza_A 214 LFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTF 293 (361)
T ss_dssp CCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHH
T ss_pred cCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHH
Confidence 66666788999999 99886 788999999876443334333333444556678888899999999988887788889
Q ss_pred HHHHHHHH
Q 048639 1031 QRIAIART 1038 (1139)
Q Consensus 1031 QrlalARA 1038 (1139)
+|+.....
T Consensus 294 ~Rl~~l~~ 301 (361)
T 2gza_A 294 ERLALMVL 301 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99987753
No 188
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.64 E-value=1.3e-18 Score=212.91 Aligned_cols=193 Identities=18% Similarity=0.241 Sum_probs=123.2
Q ss_pred cEEEEeEEEECCCCCCcccccce----------eEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-CccEEEECCcccC
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNF----------SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-NEGIILIDGKGIK 953 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~v----------sl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-~~G~I~idG~di~ 953 (1139)
.++++|+++.|+.. ..++|+.+ +++++. +||||+||||||||+++|.|++.| ++|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 48899999999632 22455444 366664 999999999999999999999988 7999999999963
Q ss_pred CC---ChHHHhhhceEEcccccccc-ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHH
Q 048639 954 EY---NLRRLRSQIGLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQ 1029 (1139)
Q Consensus 954 ~~---~l~~lR~~i~~V~Qdp~LF~-gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQ 1029 (1139)
.. ....+|+++++++|++.+++ .|+++|+.... ... ... +..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------~~~------~~~-----------~~~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------NAI------AGE-----------GMGIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------HHH------HCS-----------SSCCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------HHh------cCC-----------ccccc---
Confidence 22 23468899999999998764 58888885320 010 000 01122
Q ss_pred HHHHHHHHHhcCCCCEEEeecc------ccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh-------
Q 048639 1030 KQRIAIARTLLKRPAIMLLDEA------TSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV------- 1096 (1139)
Q Consensus 1030 rQrlalARALlr~p~ILlLDEa------TS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti------- 1096 (1139)
++++.++.+....|+++++||| |+++|+.+.+.+.+.++++.. ...+.++++++|+++..
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~-------~~~~iil~vvt~~~d~a~~~~l~l 206 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQ-------RQETISLVVVPSNVDIATTEALSM 206 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTT-------SSSCCEEEEEESSSCTTTCHHHHH
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHh-------cCCCCceEEEeccchhccHHHHHH
Confidence 2344455555668999999999 999999999999999998641 13355688999987733
Q ss_pred -h-----cCCEEEEEeCCEEEEecChhHHh
Q 048639 1097 -I-----NSDVIVVMDKGEVVEMGSHSTLV 1120 (1139)
Q Consensus 1097 -~-----~~DrI~vl~~G~ive~G~~~eLl 1120 (1139)
. ....|+|+.++.+++.|+++++.
T Consensus 207 a~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 207 AQEVDPEGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp HHHHCSSCCSEEEEEECGGGSSSSSTTCCC
T ss_pred HHHHhhcCCceEEEecchhhcCcccHHHHH
Confidence 1 14679999999999989876554
No 189
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.64 E-value=6e-20 Score=210.97 Aligned_cols=222 Identities=11% Similarity=0.009 Sum_probs=144.5
Q ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCCCccc-cCCCccE
Q 048639 180 IWVGAVVVTA-KRSTGGEVLAAVMSILFGAIALTYAAPDMQVFNQAKAAGFEIFQVIQRKPRISYSSKGKEL-EKIDGNI 257 (1139)
Q Consensus 180 ~~~g~~~v~~-~~l~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~-~~~~~~i 257 (1139)
.+.|.+.+.. +.++.+.+.+++.++.....+ .+......+..+..+..|+.+++ +|........... ....+.+
T Consensus 52 ~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~i 127 (361)
T 2gza_A 52 ERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRR 127 (361)
T ss_dssp EETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCC
T ss_pred EECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCC
Confidence 3456555555 789999988877655543332 11111122222333456776666 2221111000000 0011234
Q ss_pred ---------EEEeEEEE---CCCCCCCccc---------cceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEE
Q 048639 258 ---------DIRDVCFA---YPSRPDQLIL---------KGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI 316 (1139)
Q Consensus 258 ---------~~~~v~~~---y~~~~~~~~l---------~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i 316 (1139)
+|+|++|+ |+.. +.++| +++||.+++|+.++|+||||||||||+++|+|+++|++|.|
T Consensus 128 tl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I 206 (361)
T 2gza_A 128 TLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLI 206 (361)
T ss_dssp CHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEE
T ss_pred CHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEE
Confidence 78899998 8531 23455 99999999999999999999999999999999999999999
Q ss_pred EECCccCCCCCHHHHhcceEEEe-cCCCC---CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCcccccc
Q 048639 317 LIDSLNIKDLDLKSLRKNIGAVS-QEPSL---FTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQR 392 (1139)
Q Consensus 317 ~~~g~~~~~~~~~~~~~~i~~v~-Q~~~l---~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~ 392 (1139)
.++|. .++.....++.++|++ |++.+ +..|+++||..+.....+..+...++.+.+.+++..+|.|+++.+++-
T Consensus 207 ~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~ 284 (361)
T 2gza_A 207 TIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSC 284 (361)
T ss_dssp EEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEE
T ss_pred EECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEE
Confidence 99985 3444444678899999 88876 678999999987543333222222333456678888999999989988
Q ss_pred CCCCChHHHHHHHHHH
Q 048639 393 GVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 393 g~~LSgGqkqRi~lAR 408 (1139)
..+-..+..+|+....
T Consensus 285 H~~~~~~~~~Rl~~l~ 300 (361)
T 2gza_A 285 HAGSCELTFERLALMV 300 (361)
T ss_dssp ECSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8888899999998876
No 190
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.64 E-value=5.4e-17 Score=180.99 Aligned_cols=151 Identities=19% Similarity=0.233 Sum_probs=103.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC----HHHH--hcceEEEecCCCCCcc-cHHHHHhcC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD----LKSL--RKNIGAVSQEPSLFTG-SLMDNIKVG 356 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~--~~~i~~v~Q~~~l~~~-ti~~ni~~g 356 (1139)
+|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ +.+++|++|++.+++. ++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999986543 1222 4579999999988764 888888643
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHH
Q 048639 357 NMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436 (1139)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~ 436 (1139)
. ..+.+..+-..+...+ .....++..+|||++||||+..+|+.++| .||+.+...+.+
T Consensus 181 ~-------------~~~~d~~llDt~G~~~----~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~ 238 (304)
T 1rj9_A 181 K-------------ARGYDLLFVDTAGRLH----TKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLE 238 (304)
T ss_dssp H-------------HHTCSEEEECCCCCCT----TCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHH
T ss_pred H-------------hCCCCEEEecCCCCCC----chHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHH
Confidence 1 0000000111111111 11123566779999999999999994444 344444444444
Q ss_pred HHHHHc--CCCeEEEEecCccc
Q 048639 437 ALERAM--QGRTVILIAHRMST 456 (1139)
Q Consensus 437 ~l~~~~--~~~tvi~itH~~~~ 456 (1139)
.++... .+.|+|++||....
T Consensus 239 ~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 239 QAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHcCCcEEEEECCccc
Confidence 444432 27899999998554
No 191
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.64 E-value=2.3e-18 Score=183.25 Aligned_cols=140 Identities=13% Similarity=0.187 Sum_probs=105.9
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCc---ccHHHHHhcC--
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFT---GSLMDNIKVG-- 356 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~---~ti~~ni~~g-- 356 (1139)
.++|++++|+||||||||||+++|+|++.| +++|++|++.+++ .|+++|+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999865 5899999998874 3677776543
Q ss_pred CCC-CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHH----HHHHHHHHHHccCCCEEEEeCCCCC------
Q 048639 357 NMD-ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQ----KQRIAIARAIVKNPPILLLDEATSA------ 425 (1139)
Q Consensus 357 ~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGq----kqRi~lARal~~~~~illlDEpts~------ 425 (1139)
.+. ...+.+.+.++..+ ....+...+.++|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALL-----------RGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHH-----------TTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHH-----------cCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 222 22333433332221 1122344567888886 5799999999999999999999999
Q ss_pred -CCHHhHHHHHHHHHHH--cCCCeEEEEecCc
Q 048639 426 -LDSESEKLVQEALERA--MQGRTVILIAHRM 454 (1139)
Q Consensus 426 -LD~~~~~~i~~~l~~~--~~~~tvi~itH~~ 454 (1139)
||+..+..+.+.+.+. .+|+|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999998888888764 3589999999974
No 192
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.63 E-value=9.2e-17 Score=173.18 Aligned_cols=149 Identities=18% Similarity=0.191 Sum_probs=100.7
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccC-------CccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHh
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDP-------NEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNI 982 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-------~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL 982 (1139)
.|++||.++|+||||||||||++.|++.+.| ..|.|++++.+.. + +++++.++|+..++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--C----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--C----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997665 4558888887531 1 3457778888877777889998
Q ss_pred ccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc-------CCCCEEEeeccccCC
Q 048639 983 CYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL-------KRPAIMLLDEATSAL 1055 (1139)
Q Consensus 983 ~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl-------r~p~ILlLDEaTS~L 1055 (1139)
.+... .+.. .|++++..+++++ .+|++|+|||||+.+
T Consensus 95 ~~~~~-~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 95 YVARA-FNSN-----------------------------------HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp EEEEC-CSHH-----------------------------------HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred EEEec-CChH-----------------------------------HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 76432 1111 1222233333333 489999999999999
Q ss_pred CHHH-------H-----HHHHHHHHhhCCCCCCccccCCCeEEEEEec----Cchhhhc-CCEEEEEeCC
Q 048639 1056 DAES-------E-----RVIVSALEALNPKSSSCGELASRTTQITVAH----RLATVIN-SDVIVVMDKG 1108 (1139)
Q Consensus 1056 D~~t-------e-----~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaH----rl~ti~~-~DrI~vl~~G 1108 (1139)
|++. + ..+.+.|.+.. . ..++|||+++| ....+.. ||++++|++|
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~-------~-~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLA-------N-LYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHH-------H-HHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHH-------H-HCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 9842 2 24555555432 0 22345999999 4444765 9999999975
No 193
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.63 E-value=6.9e-17 Score=183.86 Aligned_cols=147 Identities=24% Similarity=0.305 Sum_probs=107.5
Q ss_pred EeEEEECCCCCCcccccceeE-------EEeCCcEEEEEcCCCCCHHHHHHHHhccccCC-ccEEEECCcccCCCChHHH
Q 048639 889 QNIKFNYPSRPEVTVLNNFSL-------QIEPGLKVALVGPSGAGKSSVLALLLRFYDPN-EGIILIDGKGIKEYNLRRL 960 (1139)
Q Consensus 889 ~nvsf~Y~~~~~~~vL~~vsl-------~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~-~G~I~idG~di~~~~l~~l 960 (1139)
.+++++|... ..+.|+++.+ .+++|+.++|+|||||||||++++|+|+++|. +|.|...+.++ ++. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 5788888543 3467888776 78899999999999999999999999999987 56665543333 222 2
Q ss_pred hhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 961 RSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 961 R~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
+...++++|.+.-.. ..+-.+ +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~------------~~~~~~----------------------------------------~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------TLGFSE----------------------------------------ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTT------------BSCHHH----------------------------------------HHHHHTT
T ss_pred hccccceeeeeeccc------------cCCHHH----------------------------------------HHHHHhh
Confidence 344566777543211 011111 9999999
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCC
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKG 1108 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G 1108 (1139)
.+|++|++|||| |.++.+.+.++.+ .+. |||+++|..+.+..+||+++|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~~~------------~G~-~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTAAE------------TGH-LVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHHHH------------TTC-EEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHHHh------------cCC-EEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 8888666666543 334 599999999999779998887443
No 194
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.63 E-value=3.4e-16 Score=197.50 Aligned_cols=176 Identities=16% Similarity=0.123 Sum_probs=116.6
Q ss_pred ccEEEEeEEEECCCC--CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHh
Q 048639 884 GRIEFQNIKFNYPSR--PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLR 961 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~--~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR 961 (1139)
+.|.+++..--+-.. .+..|++|+||++++|+.++|+|||||||||+++.+.... +.
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~---------------------~~ 688 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIV---------------------LM 688 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHH---------------------HH
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHH---------------------HH
Confidence 458888765433211 1246899999999999999999999999999999983221 00
Q ss_pred hhc-eEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHh-
Q 048639 962 SQI-GLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTL- 1039 (1139)
Q Consensus 962 ~~i-~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARAL- 1039 (1139)
.++ ++||++...+. +.+.+ +.+.++.+.+ ...+|+|++++..+|+++
T Consensus 689 aq~G~~vpa~~~~~~--~~d~i---------------~~~ig~~d~l--------------~~~lStf~~e~~~~a~il~ 737 (934)
T 3thx_A 689 AQIGCFVPCESAEVS--IVDCI---------------LARVGAGDSQ--------------LKGVSTFMAEMLETASILR 737 (934)
T ss_dssp HHHTCCBSEEEEEEE--CCSEE---------------EEECC-----------------------CHHHHHHHHHHHHHH
T ss_pred HhcCCccccccccch--HHHHH---------------HHhcCchhhH--------------HHhHhhhHHHHHHHHHHHH
Confidence 111 23444322110 00011 1111211111 124788888888888888
Q ss_pred -cCCCCEEEeeccccCCCHHHHHHH-HHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChh
Q 048639 1040 -LKRPAIMLLDEATSALDAESERVI-VSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHS 1117 (1139)
Q Consensus 1040 -lr~p~ILlLDEaTS~LD~~te~~I-~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~ 1117 (1139)
+.+|+++||||||+++|+.....+ +..++... ...++|+|++||..+....||++..+++|++...++++
T Consensus 738 ~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~--------~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~ 809 (934)
T 3thx_A 738 SATKDSLIIIDELGRGTSTYDGFGLAWAISEYIA--------TKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEE 809 (934)
T ss_dssp HCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHH--------HTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETT
T ss_pred hccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH--------hcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCC
Confidence 899999999999999999887777 55555432 01234599999998877789999999999999877776
Q ss_pred HH
Q 048639 1118 TL 1119 (1139)
Q Consensus 1118 eL 1119 (1139)
++
T Consensus 810 ~l 811 (934)
T 3thx_A 810 TL 811 (934)
T ss_dssp EE
T ss_pred cE
Confidence 65
No 195
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.62 E-value=1.7e-17 Score=185.72 Aligned_cols=163 Identities=16% Similarity=0.138 Sum_probs=81.6
Q ss_pred EeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhc-cCCCccEEEECCccCCCCCHHHHhcceEEE
Q 048639 260 RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARF-YDPSNGDILIDSLNIKDLDLKSLRKNIGAV 338 (1139)
Q Consensus 260 ~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~-~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 338 (1139)
+|+++.|++ +.++++++|+| +|+||||+|||||++.|.|. ..|++| |.++|.++.. .. . .+.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 478888963 45999999998 99999999999999999998 889999 8888877643 11 1 3568999
Q ss_pred ecCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEE
Q 048639 339 SQEPSLF-TGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPIL 417 (1139)
Q Consensus 339 ~Q~~~l~-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~il 417 (1139)
+|++.++ .-|+.|+..++......++..... +.+.. .......++|||||||+++|||+. ++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~------~~l~~-------~~~~~~~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTII------SYIDE-------QFERYLHDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHH------HHHHH-------HHHHHHHHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHH------HHHHH-------HHHHHHHHhCHHhhhhhhhhhhhh----ee
Confidence 9987765 458999988764211001100000 11110 011234579999999999999986 99
Q ss_pred EEeCCCCC-CCHHhHHHHHHHHHHHcC--CCeEEEEecCccc
Q 048639 418 LLDEATSA-LDSESEKLVQEALERAMQ--GRTVILIAHRMST 456 (1139)
Q Consensus 418 llDEpts~-LD~~~~~~i~~~l~~~~~--~~tvi~itH~~~~ 456 (1139)
++||||++ ||+... +.++.+.+ +.++|+.+||+..
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 99999985 999864 33444433 5678888898753
No 196
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.62 E-value=9.7e-17 Score=182.67 Aligned_cols=147 Identities=22% Similarity=0.239 Sum_probs=106.5
Q ss_pred EeEEEECCCCCCCccccceeE-------EecCCCEEEEECCCCCcHHHHHHHHHhccCCC-ccEEEECCccCCCCCHHHH
Q 048639 260 RDVCFAYPSRPDQLILKGFSL-------SIPAGKMVALVGSSGCGKSTVISLVARFYDPS-NGDILIDSLNIKDLDLKSL 331 (1139)
Q Consensus 260 ~~v~~~y~~~~~~~~l~~is~-------~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~-~G~i~~~g~~~~~~~~~~~ 331 (1139)
.+++++|... ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|...+.++. +. .
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e-~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIE-FV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCC-SC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHH-hh---h
Confidence 4677777543 3567777776 77899999999999999999999999999997 566655433322 11 1
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 332 RKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 332 ~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
+...++++|.+.-.. ..+..+ +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~------------~~~~~~----------------------------------------~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------TLGFSE----------------------------------------ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTT------------BSCHHH----------------------------------------HHHHHTT
T ss_pred hccccceeeeeeccc------------cCCHHH----------------------------------------HHHHHhh
Confidence 234556666432110 011110 9999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDG 469 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G 469 (1139)
.+|+++++|||| |.++...+.+. ...|+|+++++|+.+.+..+||++.|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 77775554443 34599999999999998779999998655
No 197
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.61 E-value=2.6e-16 Score=195.27 Aligned_cols=147 Identities=19% Similarity=0.206 Sum_probs=111.0
Q ss_pred cccEEEEeEEEECCCC--CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-CCccEEEECCcccCCCChHH
Q 048639 883 KGRIEFQNIKFNYPSR--PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-PNEGIILIDGKGIKEYNLRR 959 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~--~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-p~~G~I~idG~di~~~~l~~ 959 (1139)
.+.|++++. ++|-- .+.++++|+||+ |+.++|+|||||||||+++++.++.. ++.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 456899887 55531 135799999999 99999999999999999999999974 6777652 1 1
Q ss_pred HhhhceEEcccccccc-ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 960 LRSQIGLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 960 lR~~i~~V~Qdp~LF~-gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
.+.++++++| +|. -++.+|+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 2456888887 443 355555421 268899999999999
Q ss_pred h--cCCCCEEEeecc---ccCCCHHHH-HHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcC
Q 048639 1039 L--LKRPAIMLLDEA---TSALDAESE-RVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINS 1099 (1139)
Q Consensus 1039 L--lr~p~ILlLDEa---TS~LD~~te-~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~ 1099 (1139)
+ +.+|+++||||| |+++|..+. ..+.+.|.+ .++ |+|++||+.+....+
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~-----------~g~-~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-----------RRA-YTLFATHYFELTALG 704 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-----------HTC-EEEEECCCHHHHTCC
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh-----------CCC-EEEEEeCCHHHHHhh
Confidence 9 999999999999 999999886 468888864 233 599999998876544
No 198
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.61 E-value=2.6e-16 Score=175.50 Aligned_cols=165 Identities=19% Similarity=0.170 Sum_probs=108.6
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC----hHHH--hhhceEEcccccccc-ccHHHHhccC
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN----LRRL--RSQIGLVQQEPLLFS-CSIRNNICYG 985 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----l~~l--R~~i~~V~Qdp~LF~-gTIreNL~~~ 985 (1139)
+|+.++|||||||||||+++.|.|++.|++|+|.++|.|+.... +..+ |.++++|+|++.+++ .|+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999987654 2333 457999999997765 4778887542
Q ss_pred CCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC--EEEeeccccCCCHHHHHHH
Q 048639 986 NEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA--IMLLDEATSALDAESERVI 1063 (1139)
Q Consensus 986 ~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~--ILlLDEaTS~LD~~te~~I 1063 (1139)
. ..+.+..+-..++..+.. ...++..++||.+||||+..+|+ +|+|| |+++.| +
T Consensus 181 ~-------------~~~~d~~llDt~G~~~~~----~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~ 236 (304)
T 1rj9_A 181 K-------------ARGYDLLFVDTAGRLHTK----HNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------G 236 (304)
T ss_dssp H-------------HHTCSEEEECCCCCCTTC----HHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------H
T ss_pred H-------------hCCCCEEEecCCCCCCch----HHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------H
Confidence 1 001111111122222211 12356677999999999999999 56666 444433 3
Q ss_pred HHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcC----------CEEEEEeCCE
Q 048639 1064 VSALEALNPKSSSCGELASRTTQITVAHRLATVINS----------DVIVVMDKGE 1109 (1139)
Q Consensus 1064 ~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~----------DrI~vl~~G~ 1109 (1139)
.+.+++.. +..+ .|+|++||...+.... -.|..+-.|+
T Consensus 237 ~~~~~~~~-------~~~~-~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 237 LEQAKKFH-------EAVG-LTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp HHHHHHHH-------HHHC-CSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred HHHHHHHH-------HHcC-CcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 33333321 0013 3599999976553221 3566666665
No 199
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.60 E-value=6.5e-17 Score=187.44 Aligned_cols=166 Identities=14% Similarity=0.178 Sum_probs=101.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcc
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKN 334 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~ 334 (1139)
+.|.++|++++|++ +.+++|+||+| +|+||||||||||++.|+|...|..| .+|.++... ....+..
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeee
Confidence 45899999999963 46999999998 99999999999999999999886665 233332211 1112356
Q ss_pred eEEEecCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC
Q 048639 335 IGAVSQEPSLF-TGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN 413 (1139)
Q Consensus 335 i~~v~Q~~~l~-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~ 413 (1139)
+++++|++.++ ..||.||+.++... ...+.+.. +.+++.. .++++++||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~-~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAV-DNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhc-cchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 89999998877 46999999887531 11111111 1122221 3456678899999999999
Q ss_pred CC---EEEEeCCC-CCCCHHhHHHHHHHHHHHcCCCeEEEEecCccch
Q 048639 414 PP---ILLLDEAT-SALDSESEKLVQEALERAMQGRTVILIAHRMSTI 457 (1139)
Q Consensus 414 ~~---illlDEpt-s~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 457 (1139)
|+ ++++|||| ++||+.... .++.+..+.++|+|.|+.+.+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~~----~lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDIE----FMKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHHH----HHHHHTTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHHH----HHHHHhccCcEEEEEEcccCc
Confidence 99 99999999 699987642 233444578899999987764
No 200
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.60 E-value=4.3e-17 Score=173.04 Aligned_cols=168 Identities=16% Similarity=0.232 Sum_probs=102.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhcc-----CCCccEEEE-------CCccCC
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFY-----DPSNGDILI-------DSLNIK 324 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~-----~~~~G~i~~-------~g~~~~ 324 (1139)
|+++|++|.|+ .+++++ |++++|.+++|+|++|||||||++.|+|.. .|+.|.+.+ ++..+.
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 258888 999999999999999999999999999998 888887654 222221
Q ss_pred C---C--------CHHHHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCc-cccc
Q 048639 325 D---L--------DLKSLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYST-ELGQ 391 (1139)
Q Consensus 325 ~---~--------~~~~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~i~~ 391 (1139)
+ . ..+.+++.++++.|+....++ .+..++..+.. ..++++. +.+... +... .++.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~---------~~~~~~--~~~~~~v~n 145 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMI---------EWAVDS--NIAVLVLLT 145 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHH---------HHHHHT--TCCEEEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-hhHHHHH---------HHHHHc--CCCeEEEEe
Confidence 1 1 012344445555554333322 33333332211 0011111 122221 2222 3467
Q ss_pred cCCCCChHHHHH-HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc
Q 048639 392 RGVQLSGGQKQR-IAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442 (1139)
Q Consensus 392 ~g~~LSgGqkqR-i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 442 (1139)
+...+|+||||| +..||+++.+|+++++||||||+|......+.+.|.+..
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 777899999999 899999999999999999999999999999998887754
No 201
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.60 E-value=5.2e-18 Score=188.07 Aligned_cols=129 Identities=11% Similarity=0.104 Sum_probs=92.8
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCc---C
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEA---A 989 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~---~ 989 (1139)
++..|||+|+||||||||++.|.+++.+. | . . ++.+.+|+||+++|+.++++|+.++.++ .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 47899999999999999999999999863 2 1 1 4456666999999999999998654210 0
Q ss_pred CHHHHHHHHHHcCchHHHhhCCCCcccc------ccCCCCCCChHHHHHHHHH--HHhcCCCCEEEeeccccCCCHHH
Q 048639 990 SEAEIVEVSKKANIHDFISSLPDGYDTV------VGEKGCQLSGGQKQRIAIA--RTLLKRPAIMLLDEATSALDAES 1059 (1139)
Q Consensus 990 sd~ei~~al~~~~l~~~i~~lp~gldt~------v~e~G~~LSgGQrQrlalA--RALlr~p~ILlLDEaTS~LD~~t 1059 (1139)
+....-++.+...+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000011111233567788888998764 4455788999999999998 666 899999999999999875
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.59 E-value=1.1e-16 Score=185.55 Aligned_cols=166 Identities=16% Similarity=0.184 Sum_probs=100.3
Q ss_pred ccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhh
Q 048639 884 GRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQ 963 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~ 963 (1139)
+.|.++||+++|+. .++++|+||+| +|||+||||||||++.|+|...|..| .+|.++...+ ...++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 56999999999963 46999999998 99999999999999999999876555 2444433211 112456
Q ss_pred ceEEccccccc-cccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 048639 964 IGLVQQEPLLF-SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR 1042 (1139)
Q Consensus 964 i~~V~Qdp~LF-~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~ 1042 (1139)
+++++|++.++ ..||.||+.++.. ...++.|+.+ .+++.. .++.+.+||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~-~~~~~~~~~i-----~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDA-VDNSNCWQPV-----IDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHHH-----HHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhh-ccchhhHHHH-----HHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 89999998776 6799999987643 2222223321 123321 3556778899999999999
Q ss_pred CC---EEEeeccc-cCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh
Q 048639 1043 PA---IMLLDEAT-SALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV 1096 (1139)
Q Consensus 1043 p~---ILlLDEaT-S~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti 1096 (1139)
|+ +|++|||| +++|+... .+.+.|. .+ .++|.|.|+.+.+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~-~~lk~L~------------~~-v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDI-EFMKRLH------------EK-VNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHH-HHHHHHT------------TT-SEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHH-HHHHHHh------------cc-CcEEEEEEcccCc
Confidence 99 99999999 69998763 3333342 22 3488888887764
No 203
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.58 E-value=5.8e-16 Score=194.71 Aligned_cols=167 Identities=16% Similarity=0.157 Sum_probs=107.0
Q ss_pred cEEEEeEEEEC----CCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHH
Q 048639 256 NIDIRDVCFAY----PSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSL 331 (1139)
Q Consensus 256 ~i~~~~v~~~y----~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~ 331 (1139)
.+.+++...-. -...+..+++|+||++++|++++|+||||||||||++++.+..-..
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------- 700 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------- 700 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-------------------
Confidence 57777653211 0112457999999999999999999999999999999997642110
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc
Q 048639 332 RKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV 411 (1139)
Q Consensus 332 ~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~ 411 (1139)
+.-.++|++..-+ .+.+++. . .+ |....+..+.+++|+|++|+..++|+ +
T Consensus 701 -q~g~~vpa~~~~i--~~~d~i~-~-----------------------~i--g~~d~l~~~~stfs~em~~~~~il~~-a 750 (918)
T 3thx_B 701 -QIGSYVPAEEATI--GIVDGIF-T-----------------------RM--GAADNIYKGRSTFMEELTDTAEIIRK-A 750 (918)
T ss_dssp -HHTCCBSSSEEEE--ECCSEEE-E-----------------------EC------------CCHHHHHHHHHHHHHH-C
T ss_pred -hcCccccchhhhh--hHHHHHH-H-----------------------hC--ChHHHHHHhHHHhhHHHHHHHHHHHh-c
Confidence 0111233221100 0011110 0 00 00111122335789999999999999 8
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHH-HHHHHHc--CCCeEEEEecCccchhccCEEEE-EeCcEE
Q 048639 412 KNPPILLLDEATSALDSESEKLVQ-EALERAM--QGRTVILIAHRMSTIVNADMIAV-VEDGQV 471 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~-~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~-l~~G~i 471 (1139)
.+|+++||||||++||+.....+. ..++.+. .|+|+|++||+++....||+.-- +.++++
T Consensus 751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~ 814 (918)
T 3thx_B 751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHM 814 (918)
T ss_dssp CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEE
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEE
Confidence 999999999999999999877765 5555542 48999999999988766665421 344444
No 204
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.58 E-value=4.7e-16 Score=167.88 Aligned_cols=166 Identities=14% Similarity=0.043 Sum_probs=114.5
Q ss_pred CccccceeE-EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHh---cceEEEecCCCCCcc
Q 048639 272 QLILKGFSL-SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLR---KNIGAVSQEPSLFTG 347 (1139)
Q Consensus 272 ~~~l~~is~-~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~---~~i~~v~Q~~~l~~~ 347 (1139)
.+.|+++.. .+++|++++|+||||||||||++.+++...+.+|.+.+.+.+. +.+.++ ..+++.+|+...
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE--- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT---
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh---
Confidence 457899988 8999999999999999999999999999888888888765443 222222 234444433210
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCC
Q 048639 348 SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPP--ILLLDEATSA 425 (1139)
Q Consensus 348 ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~--illlDEpts~ 425 (1139)
+++..-.. ... ... + ..+. ...|.+|.++...+.+...+|+ ++++||||+.
T Consensus 83 ---~~~~~~~~-~~~--------------~~~--~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 83 ---KKLIIIDA-LMK--------------EKE--D----QWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp ---TTEEEEEC-CC--------------------C----TTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred ---CCEEEEec-ccc--------------ccC--c----eeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 01111000 000 000 0 0011 1349999999888888778999 9999999988
Q ss_pred C--CHHhHHHHHHHHHHHc--CCCeEEEEecCc--------cchhc-cCEEEEEeCcE
Q 048639 426 L--DSESEKLVQEALERAM--QGRTVILIAHRM--------STIVN-ADMIAVVEDGQ 470 (1139)
Q Consensus 426 L--D~~~~~~i~~~l~~~~--~~~tvi~itH~~--------~~~~~-~d~i~~l~~G~ 470 (1139)
+ |+.....+.+.++++. .+.|+|+++|.. ..+.. ||+|++|++.+
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 8 9988888888887763 488999999998 44665 99999998653
No 205
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.58 E-value=3.7e-15 Score=151.43 Aligned_cols=80 Identities=33% Similarity=0.420 Sum_probs=71.3
Q ss_pred cCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEEE-
Q 048639 392 RGVQLSGGQKQRIAIARAIV----KNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAVV- 466 (1139)
Q Consensus 392 ~g~~LSgGqkqRi~lARal~----~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l- 466 (1139)
....||||||||++|||+++ ++|+++||||||++||+.+...+.+.|+++.++.++|+|||+...+..||+++.+
T Consensus 61 ~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 61 RIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEE
Confidence 45689999999999999995 5679999999999999999999999999888788999999999888889999865
Q ss_pred -eCcEE
Q 048639 467 -EDGQV 471 (1139)
Q Consensus 467 -~~G~i 471 (1139)
++|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 46643
No 206
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.57 E-value=1e-16 Score=179.51 Aligned_cols=165 Identities=15% Similarity=0.192 Sum_probs=80.0
Q ss_pred EeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc-ccCCccEEEECCcccCCCChHHHhhhceEE
Q 048639 889 QNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRF-YDPNEGIILIDGKGIKEYNLRRLRSQIGLV 967 (1139)
Q Consensus 889 ~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl-~~p~~G~I~idG~di~~~~l~~lR~~i~~V 967 (1139)
+||+++|.. ..++++++|+| +|+|+||+|||||++.|++. ..|.+| |.++|.++.. .. . ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 478888953 46999999988 99999999999999999998 888899 9999987753 11 1 4668999
Q ss_pred ccccccc-cccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEE
Q 048639 968 QQEPLLF-SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIM 1046 (1139)
Q Consensus 968 ~Qdp~LF-~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~IL 1046 (1139)
+|++.++ .-|+.||.-++......++..... +++.. .++..+ .++|||||||+++|||+. +|
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~------~~l~~---~~~~~~----~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTII------SYIDE---QFERYL----HDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHH------HHHHH---HHHHHH----HHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHH------HHHHH---HHHHHH----HHhCHHhhhhhhhhhhhh----ee
Confidence 9987544 568888877653211001111111 11111 011122 358999999999999986 99
Q ss_pred EeeccccC-CCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchh
Q 048639 1047 LLDEATSA-LDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLAT 1095 (1139)
Q Consensus 1047 lLDEaTS~-LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~t 1095 (1139)
++||||++ ||+... +.+++... ....++|...|++.+
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~--------~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHN--------KVNIVPVIAKADTLT 169 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTT--------TSCEEEEECCGGGSC
T ss_pred eeecCcccCCCHHHH----HHHHHHHh--------cCCEEEEEEeCCCCC
Confidence 99999985 999874 33443320 123557888898754
No 207
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.55 E-value=4.5e-17 Score=180.55 Aligned_cols=129 Identities=12% Similarity=0.071 Sum_probs=93.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCC---C
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMD---A 360 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~ 360 (1139)
++.+++|+|+||||||||++.|.+++.+. | . . ++.+.+|+||+++++.++++|+.++.++ .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 56799999999999999999999999763 2 0 0 3456667999999999999999775321 0
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCCCCcc------ccccCCCCChHHHHHHHHH--HHHccCCCEEEEeCCCCCCCHHh
Q 048639 361 DDEQIYNASMMANAHSFISQLPDQYSTE------LGQRGVQLSGGQKQRIAIA--RAIVKNPPILLLDEATSALDSES 430 (1139)
Q Consensus 361 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~------i~~~g~~LSgGqkqRi~lA--Ral~~~~~illlDEpts~LD~~~ 430 (1139)
.....-++.....+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|+|+||||+++|+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000001112234457788999997653 5667889999999999998 565 999999999999999864
No 208
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.55 E-value=9.2e-15 Score=148.56 Aligned_cols=80 Identities=23% Similarity=0.291 Sum_probs=69.2
Q ss_pred CCCCChHHHHHHHHHHHhc----CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhh
Q 048639 1022 GCQLSGGQKQRIAIARTLL----KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVI 1097 (1139)
Q Consensus 1022 G~~LSgGQrQrlalARALl----r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~ 1097 (1139)
...||||||||++|||+++ ++|+++||||||++||+.+.+.+.+.|++.. .+ +++|+|+||..++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~---------~~-~~~ivith~~~~~~ 131 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS---------KE-SQFIVITLRDVMMA 131 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT---------TT-SEEEEECSCHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc---------cC-CEEEEEEecHHHHH
Confidence 3579999999999999996 6679999999999999999999999998764 33 45999999999988
Q ss_pred cCCEEEEE--eCCEEE
Q 048639 1098 NSDVIVVM--DKGEVV 1111 (1139)
Q Consensus 1098 ~~DrI~vl--~~G~iv 1111 (1139)
.||+|+++ ++|...
T Consensus 132 ~ad~i~~v~~~~g~s~ 147 (173)
T 3kta_B 132 NADKIIGVSMRDGVSK 147 (173)
T ss_dssp TCSEEEEEEEETTEEE
T ss_pred hCCEEEEEEecCCEEE
Confidence 89999855 577643
No 209
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.55 E-value=3.6e-15 Score=160.86 Aligned_cols=167 Identities=13% Similarity=0.058 Sum_probs=114.9
Q ss_pred cccccceeE-EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhh---hceEEccccccccc
Q 048639 901 VTVLNNFSL-QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS---QIGLVQQEPLLFSC 976 (1139)
Q Consensus 901 ~~vL~~vsl-~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~---~i~~V~Qdp~LF~g 976 (1139)
.+.|+++.. .+++|+.++|+||+|||||||++.|++...+.+|.+.+.+.+.. .+.++. .+++.+|+...
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES---RDSIIRQAKQFNWDFEEYIE--- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC---HHHHHHHHHHTTCCCGGGBT---
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC---HHHHHHHHHHhcchHHHHhh---
Confidence 468999998 89999999999999999999999999988888888888765543 333333 34554443221
Q ss_pred cHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC--EEEeeccccC
Q 048639 977 SIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPA--IMLLDEATSA 1054 (1139)
Q Consensus 977 TIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~--ILlLDEaTS~ 1054 (1139)
+++...+ .... .. + +. .+. ...|.+|.++.+.+.+...+|+ +|++||||+.
T Consensus 83 ---~~~~~~~-~~~~-~~-------~--------~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 83 ---KKLIIID-ALMK-EK-------E--------DQ----WSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp ---TTEEEEE-CCC--------------------CT----TBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred ---CCEEEEe-cccc-cc-------C--------ce----eee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 1221110 0000 00 0 00 010 1248999988888877777999 9999999988
Q ss_pred C--CHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCc--------hhhhc-CCEEEEEeCC
Q 048639 1055 L--DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL--------ATVIN-SDVIVVMDKG 1108 (1139)
Q Consensus 1055 L--D~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl--------~ti~~-~DrI~vl~~G 1108 (1139)
+ |+.....+.+.|++... ..++|+|+++|.. ..+.. ||+|++|+..
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~--------~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLN--------KWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHH--------HTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHH--------hCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 8 99888888888876530 2345699999998 44655 9999999864
No 210
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.54 E-value=2.2e-15 Score=188.13 Aligned_cols=167 Identities=17% Similarity=0.187 Sum_probs=110.5
Q ss_pred ccEEEEeEEEECCCC----CCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCC-CccEEEECCccCCCCCHH
Q 048639 255 GNIDIRDVCFAYPSR----PDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDP-SNGDILIDSLNIKDLDLK 329 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~----~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~-~~G~i~~~g~~~~~~~~~ 329 (1139)
+.+.+++.. +|-- .++.+++|++|+ ++|++++|+||||||||||+++++|+..+ ..|. .+..
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA---- 642 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS----
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch----
Confidence 347777652 3310 135699999999 99999999999999999999999997532 2221 1111
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 330 SLRKNIGAVSQEPSLFTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 330 ~~~~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
-+..+++++| +|.. ++.||+..+ ..++|+|+++ ++.+.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~------------------------------------~stf~~e~~~-~~~il 681 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG------------------------------------RSTFMVEMTE-TANIL 681 (800)
T ss_dssp -SEEEECCCCE---EEEEEC-----------------------------------------------CHHHHHH-HHHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh------------------------------------hhhhhHHHHH-HHHHH
Confidence 1234666655 3332 444443211 1245677664 44444
Q ss_pred HHccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHc--CCCeEEEEecCccchhccCEEEEEeCcEEEEec
Q 048639 409 AIVKNPPILLLDEATSALDSESEKLV-QEALERAM--QGRTVILIAHRMSTIVNADMIAVVEDGQVTETG 475 (1139)
Q Consensus 409 al~~~~~illlDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g 475 (1139)
..+.+|+++|||||++++|+.....+ ...++.+. .++|+|++||+.+....||++..+++|++....
T Consensus 682 ~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 682 HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEE
T ss_pred HhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEE
Confidence 56899999999999999998765443 55665553 389999999999887779988888888886543
No 211
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.53 E-value=2.5e-15 Score=159.73 Aligned_cols=141 Identities=14% Similarity=0.098 Sum_probs=104.0
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhccccC--CccEEEECCcccCCCChHHHhhhceEEccccccccc-cH----HHH
Q 048639 909 LQIEPGLKVALVGPSGAGKSSVLALLLRFYDP--NEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSC-SI----RNN 981 (1139)
Q Consensus 909 l~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p--~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~g-TI----reN 981 (1139)
-+.++|+.++|+||||||||||+++|.|+++| ..|.|.+++.+.+. ..++.++|++|++.+|.. +. .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 46789999999999999999999999999986 68999999877643 246789999999988864 33 455
Q ss_pred hccCCCc--CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHH
Q 048639 982 ICYGNEA--ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059 (1139)
Q Consensus 982 L~~~~~~--~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~t 1059 (1139)
+.+.... .+.++ ++.++.+++++||| ||+++
T Consensus 87 ~~~~~~~yg~~~~~------------------------------------------v~~~l~~G~illLD-----LD~~~ 119 (219)
T 1s96_A 87 AEVFGNYYGTSREA------------------------------------------IEQVLATGVDVFLD-----IDWQG 119 (219)
T ss_dssp EEETTEEEEEEHHH------------------------------------------HHHHHTTTCEEEEE-----CCHHH
T ss_pred HHHHhccCCCCHHH------------------------------------------HHHHHhcCCeEEEE-----ECHHH
Confidence 5432110 01112 23344557999999 99999
Q ss_pred HHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEEecChhHHhh
Q 048639 1060 ERVIVSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVEMGSHSTLVA 1121 (1139)
Q Consensus 1060 e~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive~G~~~eLl~ 1121 (1139)
...+.+.+. +++||++++|+++.+.. |+ +.+| .|+++++.+
T Consensus 120 ~~~i~~~l~-------------~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 120 AQQIRQKMP-------------HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHHHCT-------------TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHHHcc-------------CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 999988764 23569999999998876 43 6777 678888864
No 212
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.52 E-value=2.8e-15 Score=172.50 Aligned_cols=178 Identities=13% Similarity=0.177 Sum_probs=113.3
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcE--EEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhh
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLK--VALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS 962 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~--vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~ 962 (1139)
.+++++ +++|++ .+ |+++||+|++|+. +|||||||||||||+++|+|+. ++|.++........++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 466667 788853 35 9999999999999 9999999999999999999983 4566665444444567
Q ss_pred hceEEccccccc-cccHHHHhccCCCcCCHHH------------HHHHHHHc-CchHHHhhCCCCcccc-------ccCC
Q 048639 963 QIGLVQQEPLLF-SCSIRNNICYGNEAASEAE------------IVEVSKKA-NIHDFISSLPDGYDTV-------VGEK 1021 (1139)
Q Consensus 963 ~i~~V~Qdp~LF-~gTIreNL~~~~~~~sd~e------------i~~al~~~-~l~~~i~~lp~gldt~-------v~e~ 1021 (1139)
.+++++|++.++ ..|+.||+.++.. .+.+. ..+.++.. ++. .+++..-|+. |.+.
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~~q~~~~L~e~~~i~---r~l~~~~d~rVh~~v~fI~d~ 158 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFIDAQFEAYLQEELKIR---RVLHTYHDSRIHVCLYFIAPT 158 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHHHHHHHHHHC--CC---CCCCCSCC--CCEEEEEECCC
T ss_pred eEEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHhhh---hhhcccccccccEEEEEEeCC
Confidence 899999999877 5699999998753 33222 11222221 111 1112223333 1234
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHh-hCCCCCCccccCCCeEEEEEec
Q 048639 1022 GCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEA-LNPKSSSCGELASRTTQITVAH 1091 (1139)
Q Consensus 1022 G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~-~~~~~~~~~~~~~~tTvI~IaH 1091 (1139)
+..|+..+ +.++|+|-.+++|+++||+|..|.+.--..+.+.|++ +. ..+..|+.|+.
T Consensus 159 ~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~---------~~gi~I~~is~ 217 (427)
T 2qag_B 159 GHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELV---------SNGVQIYQFPT 217 (427)
T ss_dssp C---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHB---------TTBCCCCCCC-
T ss_pred CCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHH---------HcCCcEEecCC
Confidence 45577766 7899999999999999999999998777777777876 33 22334777775
No 213
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.51 E-value=1.2e-15 Score=162.14 Aligned_cols=142 Identities=11% Similarity=0.168 Sum_probs=101.8
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccCC--CccEEEECCccCCCCCHHHHhcceEEEecCCCCCcc-cH----HHH
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDP--SNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SL----MDN 352 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-ti----~~n 352 (1139)
-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+.+. ..+..++|++|++.+|.. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 45789999999999999999999999999986 78999998876543 235679999999887754 44 455
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHH
Q 048639 353 IKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEK 432 (1139)
Q Consensus 353 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~ 432 (1139)
+.+.... .|-.+++ ++.++.+++++||| ||+.+..
T Consensus 87 ~~~~~~~-------------------------------------yg~~~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 87 AEVFGNY-------------------------------------YGTSREA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp EEETTEE-------------------------------------EEEEHHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred HHHHhcc-------------------------------------CCCCHHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 5442100 0000111 23334457999999 9999999
Q ss_pred HHHHHHHHHcCCCeEEEEecCccchhccCEEEEEeCcEEEEecChhhhh
Q 048639 433 LVQEALERAMQGRTVILIAHRMSTIVNADMIAVVEDGQVTETGTHHSLL 481 (1139)
Q Consensus 433 ~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 481 (1139)
.+.+.+. ++.||+++||+++.+.. |+ +..| .++++++.
T Consensus 122 ~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~ 159 (219)
T 1s96_A 122 QIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIA 159 (219)
T ss_dssp HHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHH
T ss_pred HHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHH
Confidence 9988775 58899999999998865 32 5666 56777664
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.51 E-value=5e-15 Score=170.42 Aligned_cols=179 Identities=12% Similarity=0.137 Sum_probs=114.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCE--EEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhc
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKM--VALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRK 333 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~--~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~ 333 (1139)
.+++++ +++|++ .+ |+++||++++|++ ++|+||||||||||+++|+|+. ++|.++....+...++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 356666 788853 35 9999999999999 9999999999999999999984 3444444333333456
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCCCHHH----HHHHHHHhcHHHHHHhC-------CCCCCcc-------ccccCC
Q 048639 334 NIGAVSQEPSLFT-GSLMDNIKVGNMDADDEQ----IYNASMMANAHSFISQL-------PDQYSTE-------LGQRGV 394 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~-~ti~~ni~~g~~~~~~~~----~~~~~~~~~~~~~i~~l-------~~g~~t~-------i~~~g~ 394 (1139)
.++|++|++.++. .|+.||+.+|.. ...+. +.+... ....+.+... +...++. +-+.+.
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~ 160 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH 160 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-
T ss_pred eEEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC
Confidence 8999999998874 599999999863 22221 111111 1122333332 1112222 123445
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHH-Hc-CCCeEEEEec
Q 048639 395 QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALER-AM-QGRTVILIAH 452 (1139)
Q Consensus 395 ~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~-~~-~~~tvi~itH 452 (1139)
.|+-.+ +.++++|..+++|+++|+|+..|.+.....+.+.+++ +. .|.+++.++.
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 677766 7999999999999999999999998777777777775 54 4778888775
No 215
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.49 E-value=1.3e-14 Score=182.49 Aligned_cols=159 Identities=18% Similarity=0.174 Sum_probs=103.2
Q ss_pred ccEEEEeEEEECC------CCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh
Q 048639 884 GRIEFQNIKFNYP------SRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL 957 (1139)
Q Consensus 884 g~I~~~nvsf~Y~------~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l 957 (1139)
+.|.+++.. +| ...+..|++|+||++++|+.++|+|||||||||+++++.++.-
T Consensus 639 ~~i~i~~~r--HP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~------------------ 698 (918)
T 3thx_B 639 RKIVIKNGR--HPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI------------------ 698 (918)
T ss_dssp CEEEEEEEC--CHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH------------------
T ss_pred CcEEEEecc--chhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH------------------
Confidence 357777643 33 1113579999999999999999999999999999999865421
Q ss_pred HHHhhhceEEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 958 RRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 958 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+.+.-++||++..-+ ++.+++ +...++.+.+ ..+-+.+|+|++|+..++|
T Consensus 699 --~aq~g~~vpa~~~~i--~~~d~i---------------~~~ig~~d~l-----------~~~~stfs~em~~~~~il~ 748 (918)
T 3thx_B 699 --MAQIGSYVPAEEATI--GIVDGI---------------FTRMGAADNI-----------YKGRSTFMEELTDTAEIIR 748 (918)
T ss_dssp --HHHHTCCBSSSEEEE--ECCSEE---------------EEEC---------------------CCHHHHHHHHHHHHH
T ss_pred --HhhcCccccchhhhh--hHHHHH---------------HHhCChHHHH-----------HHhHHHhhHHHHHHHHHHH
Confidence 111223455543211 011111 1111222211 1223468999999999999
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHHH-HHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCE
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVIV-SALEALNPKSSSCGELASRTTQITVAHRLATVINSDV 1101 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I~-~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~Dr 1101 (1139)
+ +.+|++|||||||+++|+.....+. ..++... ...++|+|++||.++....||+
T Consensus 749 ~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~--------~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 749 K-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFI--------RDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp H-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHH--------HTTCCEEEEECSCGGGGGHHHH
T ss_pred h-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--------HhcCCeEEEEeCcHHHHHHHhh
Confidence 9 8999999999999999999887776 5555432 0223459999999887655554
No 216
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.49 E-value=5.9e-14 Score=155.88 Aligned_cols=151 Identities=15% Similarity=0.186 Sum_probs=98.1
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHh-cCCCC
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIK-VGNMD 359 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~-~g~~~ 359 (1139)
.+++|++++|+||||||||||++.+++... .|.+. .|.+... +..+.|+..+... ..+.+++. ++. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 478999999999999999999999999764 46653 3443311 2457787766432 12222221 121 1
Q ss_pred CCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHhH---HHH
Q 048639 360 ADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS--ALDSESE---KLV 434 (1139)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts--~LD~~~~---~~i 434 (1139)
....... +.++.+ ++....+.....||+||+|++ |+++.+|+++++||||+ ++|.... ..+
T Consensus 94 ~~~~~~~---------~~~~~l--~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQ---------AVADGL--LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHH---------HHHHHE--EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhh---------hccCce--EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 1121111 112222 222334566788999998875 68889999999999999 9998544 667
Q ss_pred HHHHHHHc--CCCeEEEEecCccch
Q 048639 435 QEALERAM--QGRTVILIAHRMSTI 457 (1139)
Q Consensus 435 ~~~l~~~~--~~~tvi~itH~~~~~ 457 (1139)
.+.|+.+. .|+|+|+++|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 77777663 389999999987654
No 217
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.48 E-value=2.2e-16 Score=178.36 Aligned_cols=153 Identities=17% Similarity=0.179 Sum_probs=109.1
Q ss_pred CEEEEECCCCCcHHHHHHHHHhcc--------CCCccEEEECCccCCCCC---------------HHHHhcceEEE---e
Q 048639 286 KMVALVGSSGCGKSTVISLVARFY--------DPSNGDILIDSLNIKDLD---------------LKSLRKNIGAV---S 339 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~--------~~~~G~i~~~g~~~~~~~---------------~~~~~~~i~~v---~ 339 (1139)
++++|+|+||||||||++.|+|+. .|+.|+|.+||.++...+ ...+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999887653 23566778888 7
Q ss_pred cCCCC-CcccHHHHHhcCCCCCCHHHHHHHHH-HhcHHHHHHhCCCCCCcccc-----ccCCCCChHHHHHHHHHHHHcc
Q 048639 340 QEPSL-FTGSLMDNIKVGNMDADDEQIYNASM-MANAHSFISQLPDQYSTELG-----QRGVQLSGGQKQRIAIARAIVK 412 (1139)
Q Consensus 340 Q~~~l-~~~ti~~ni~~g~~~~~~~~~~~~~~-~~~~~~~i~~l~~g~~t~i~-----~~g~~LSgGqkqRi~lARal~~ 412 (1139)
|++.+ ++.++.||..++.|. .+..... .....+ -..+ ++.-+.++ +...+||||||||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~----~~~~~~~~~~~~~~-~~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPG----PIIQTFFSHEVLCQ-RYLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHH----HHHHHHHHSHHHHH-HEEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHH----HHHHHHhcCccccC-eEEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 88764 577999999887542 2221110 000000 0001 01111111 1122699999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCcc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMS 455 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 455 (1139)
+|+++ ||| ..+.+.++++..+.|++++||+..
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 99987 888 667777777777899999999744
No 218
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.47 E-value=1.6e-16 Score=168.57 Aligned_cols=114 Identities=14% Similarity=0.133 Sum_probs=87.1
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhcc----CC
Q 048639 911 IEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICY----GN 986 (1139)
Q Consensus 911 I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~----~~ 986 (1139)
.++|+++||+||||||||||+++|.|+++|. | ..+++|+||.+.++.+.++|+.. +.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999875 4 24677888887777777777531 11
Q ss_pred Cc-CCHHHHHHHHHHcCchHHHhhCC--CCccccccCCCCCCChHHHHHHHHH-HHhcCCCCEEEeeccc
Q 048639 987 EA-ASEAEIVEVSKKANIHDFISSLP--DGYDTVVGEKGCQLSGGQKQRIAIA-RTLLKRPAIMLLDEAT 1052 (1139)
Q Consensus 987 ~~-~sd~ei~~al~~~~l~~~i~~lp--~gldt~v~e~G~~LSgGQrQrlalA-RALlr~p~ILlLDEaT 1052 (1139)
+. ...+.+.+. +..++ +.+++++.+.+..+|+||+|++++| |+++.++.++++|||.
T Consensus 80 ~~~~~~~~~~~~---------l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 PETFDFEGFQRL---------CHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp GGGBCHHHHHHH---------HHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CchhhHHHHHHH---------HHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 11 222333333 22222 3477888999999999999999999 9999999999999984
No 219
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.46 E-value=7.5e-16 Score=174.04 Aligned_cols=149 Identities=19% Similarity=0.193 Sum_probs=108.2
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc--------cCCccEEEECCcccCCCC---------------hHHHhhhceEE---c
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFY--------DPNEGIILIDGKGIKEYN---------------LRRLRSQIGLV---Q 968 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~--------~p~~G~I~idG~di~~~~---------------l~~lR~~i~~V---~ 968 (1139)
+.++|+|++|||||||++.|+|+. .|+.|+|.|||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999998763 35678889988 7
Q ss_pred cccc-cccccHHHHhccCCCcCCHHHHHHHH-------HHcCchHHHh--hCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 969 QEPL-LFSCSIRNNICYGNEAASEAEIVEVS-------KKANIHDFIS--SLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 969 Qdp~-LF~gTIreNL~~~~~~~sd~ei~~al-------~~~~l~~~i~--~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
|++. .|+.++.||..++.|. .+.+.+ +...+...+. .+.+..+.. .++|+||+||.+.+|+
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~----~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~-----~~ls~g~~Q~~~ad~i 155 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPG----PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM-----NQFTIAQSQVGYADRI 155 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHH----HHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH-----HHCHHHHHHHHTCSEE
T ss_pred hcCCCCCCEEEEeCCCCCCHH----HHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH-----hhchHHHHHHHhCCEE
Confidence 8876 4788999999887542 222111 1112211111 011111111 1589999999999999
Q ss_pred hcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCc
Q 048639 1039 LLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRL 1093 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl 1093 (1139)
++.+|+++ ||| +.+.+.|++.. .+ .|+++++|+.
T Consensus 156 ll~k~dl~--de~---------~~l~~~l~~l~---------~~-~~ii~~sh~~ 189 (318)
T 1nij_A 156 LLTKTDVA--GEA---------EKLHERLARIN---------AR-APVYTVTHGD 189 (318)
T ss_dssp EEECTTTC--SCT---------HHHHHHHHHHC---------SS-SCEEECCSSC
T ss_pred EEECcccC--CHH---------HHHHHHHHHhC---------CC-CeEEEecccC
Confidence 99999987 998 67777777653 23 4599999964
No 220
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.46 E-value=6e-14 Score=149.83 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=96.0
Q ss_pred ccccceeE-EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 048639 273 LILKGFSL-SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMD 351 (1139)
Q Consensus 273 ~~l~~is~-~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ 351 (1139)
+.|+++.. .+++|++++|+||+|||||||++.+++ .+..+.++++..+ ..+.. .+++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~------------------~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPE------------------RLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHH------------------HHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHH------------------HHHH
Confidence 46777765 799999999999999999999999999 3333334443321 01111 1111
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChH--HHHHHHHHHHHccC-CCEEEEeCCCCCCCH
Q 048639 352 NIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGG--QKQRIAIARAIVKN-PPILLLDEATSALDS 428 (1139)
Q Consensus 352 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgG--qkqRi~lARal~~~-~~illlDEpts~LD~ 428 (1139)
..... ....++ ..+.+. ...+|++ |+|+++.+|+++.+ |+++++||||+.+|+
T Consensus 65 ~~~~~--~~~~~~------------~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 65 MAETR--GLNPEE------------ALSRFI----------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHTT--TCCHHH------------HHHHEE----------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHhc--CCChHH------------HhhcEE----------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 11100 011111 111110 1133444 46789999999986 999999999999997
Q ss_pred HhH--------HHHHHHHHHHcC--CCeEEEEecCcc-------------chhc-cCEEEEEeCc
Q 048639 429 ESE--------KLVQEALERAMQ--GRTVILIAHRMS-------------TIVN-ADMIAVVEDG 469 (1139)
Q Consensus 429 ~~~--------~~i~~~l~~~~~--~~tvi~itH~~~-------------~~~~-~d~i~~l~~G 469 (1139)
... ..+.+.|+++.+ +.|+|+++|... .+.. ||++++|+..
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 432 234444555433 889999999865 3444 9999999754
No 221
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.45 E-value=6.4e-15 Score=153.83 Aligned_cols=138 Identities=14% Similarity=0.030 Sum_probs=92.5
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcC
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAA 989 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~ 989 (1139)
.+++|+.++|+|++||||||++++|.+. |..|.|.+||.++..... -++.+++++|++. ...|+.+|+....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 678999999987643221 1345788999775 4568888885421
Q ss_pred CHHHHHHHHHHcCchHHHhhCCC--Ccccc--ccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHH
Q 048639 990 SEAEIVEVSKKANIHDFISSLPD--GYDTV--VGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVS 1065 (1139)
Q Consensus 990 sd~ei~~al~~~~l~~~i~~lp~--gldt~--v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~ 1065 (1139)
.. .. ..+-...++.... +++.. .+.....+|+|++|++++||++.++|+++ +|++..+.+.+
T Consensus 77 ---~~--~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GR--YA-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HH--HH-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HH--Hh-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 01 11 1111111111110 11110 12234579999999999999999999987 57777766766
Q ss_pred HHHh
Q 048639 1066 ALEA 1069 (1139)
Q Consensus 1066 ~l~~ 1069 (1139)
.++.
T Consensus 143 ~~~~ 146 (191)
T 1zp6_A 143 QFAD 146 (191)
T ss_dssp HTTC
T ss_pred HHhc
Confidence 6654
No 222
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.45 E-value=4.4e-14 Score=150.89 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=97.6
Q ss_pred cccccceeE-EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHH
Q 048639 901 VTVLNNFSL-QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIR 979 (1139)
Q Consensus 901 ~~vL~~vsl-~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIr 979 (1139)
.+.|+++.. .+++|+.++|+||+|||||||+..+++ .+..+.+++++.+ ..+...+++..
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~~~--------------- 66 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQMA--------------- 66 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHHHH---------------
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHHHH---------------
Confidence 356777776 799999999999999999999999999 4444555655433 12223332211
Q ss_pred HHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChH--HHHHHHHHHHhcCC-CCEEEeeccccCCC
Q 048639 980 NNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGG--QKQRIAIARTLLKR-PAIMLLDEATSALD 1056 (1139)
Q Consensus 980 eNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgG--QrQrlalARALlr~-p~ILlLDEaTS~LD 1056 (1139)
+. ++ ...+++ ++... +. ..|++ |+|+++.+|+++++ |+++|+||||+.+|
T Consensus 67 ~~--~~---~~~~~~---~~~~~---------------~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 67 ET--RG---LNPEEA---LSRFI---------------LF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp HT--TT---CCHHHH---HHHEE---------------EE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred Hh--cC---CChHHH---hhcEE---------------EE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 00 00 111111 11110 11 12333 47899999999986 99999999999999
Q ss_pred HHHH--------HHHHHHHHhhCCCCCCccccCCCeEEEEEecCch-------------hhh-cCCEEEEEeCC
Q 048639 1057 AESE--------RVIVSALEALNPKSSSCGELASRTTQITVAHRLA-------------TVI-NSDVIVVMDKG 1108 (1139)
Q Consensus 1057 ~~te--------~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~-------------ti~-~~DrI~vl~~G 1108 (1139)
...+ ..+.+.|++.. ...+++ +|+++|... .+. .||+|++|+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~-------~~~~~~-vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIA-------RKHNIP-VIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHH-------HHHTCC-EEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHH-------HHcCCE-EEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 8543 23444455432 012344 999999765 333 49999999754
No 223
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.44 E-value=1e-13 Score=153.97 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=99.0
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhc-cCCCc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNIC-YGNEA 988 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~-~~~~~ 988 (1139)
.+++|+.++|+||+|||||||+..+.+... .|.+ +.|.+... +..+.|++.+... ..+..++. ++. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~-~~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD-LLEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC-TTCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC-cCCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 478999999999999999999999998764 5766 34554321 2356777665432 22322221 121 2
Q ss_pred CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeecccc--CCCHHHH---HHH
Q 048639 989 ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS--ALDAESE---RVI 1063 (1139)
Q Consensus 989 ~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS--~LD~~te---~~I 1063 (1139)
..+++..++++...+.+. .+.....||+||+|++ |+++++|+++|+||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~~~~~l~l~~~-----------~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQAVADGLLIQPL-----------IGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHHHHHHEEECCC-----------TTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhhccCceEEeec-----------CCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 334445555555544321 2334457999998865 68889999999999999 9998655 666
Q ss_pred HHHHHhhCCCCCCccccCCCeEEEEEecCchhh
Q 048639 1064 VSALEALNPKSSSCGELASRTTQITVAHRLATV 1096 (1139)
Q Consensus 1064 ~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti 1096 (1139)
.+.|++.. . ..++|||+|+|.....
T Consensus 160 ~~~L~~l~-------~-~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIA-------A-DTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHH-------H-HHCCEEEEEEEC----
T ss_pred HHHHHHHH-------H-HcCCEEEEEecCCCcc
Confidence 66676543 0 2234599999987654
No 224
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.44 E-value=2.1e-15 Score=171.26 Aligned_cols=175 Identities=15% Similarity=0.179 Sum_probs=119.7
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC----hHHHh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN----LRRLR 961 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----l~~lR 961 (1139)
|+++|++++|. ...+|+++||++++|++++|+|++|||||||++.|.|++.|++|+|.+.|.|+.... ....|
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 45566777774 235899999999999999999999999999999999999999999999999986543 23467
Q ss_pred hhceEEcccccccc----------cc---HHHHhc--------------cCCCcCCHHHHHHHHHHcC------------
Q 048639 962 SQIGLVQQEPLLFS----------CS---IRNNIC--------------YGNEAASEAEIVEVSKKAN------------ 1002 (1139)
Q Consensus 962 ~~i~~V~Qdp~LF~----------gT---IreNL~--------------~~~~~~sd~ei~~al~~~~------------ 1002 (1139)
+++++++|+|.+|. || +++.+. +|- ..++..+. +.+.
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi-~~~~~~v~---~~~d~vl~v~d~~~~~ 182 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGV-GQSETAVA---DLTDFFLVLMLPGAGD 182 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSS-SSCHHHHH---TTSSEEEEEECSCC--
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCC-CcchhhHH---hhCCEEEEEEcCCCcc
Confidence 88999999998885 22 222210 010 00111111 1111
Q ss_pred ----chHHHhhCCCCcc-ccccC-CCCCCChHHHHHHHHHHHhcC------CCCEEEeeccccCCCHHHHHHHHHHHHhh
Q 048639 1003 ----IHDFISSLPDGYD-TVVGE-KGCQLSGGQKQRIAIARTLLK------RPAIMLLDEATSALDAESERVIVSALEAL 1070 (1139)
Q Consensus 1003 ----l~~~i~~lp~gld-t~v~e-~G~~LSgGQrQrlalARALlr------~p~ILlLDEaTS~LD~~te~~I~~~l~~~ 1070 (1139)
+...+...|+-+- +.+.. ....+|+|++|+++.|++++. +|+++. ||++|.+.-..+.+.|.+.
T Consensus 183 ~~~~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 183 ELQGIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp ----CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred cHHHHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 0001111111000 00110 113479999999999999998 688886 9999999999999999865
Q ss_pred C
Q 048639 1071 N 1071 (1139)
Q Consensus 1071 ~ 1071 (1139)
.
T Consensus 259 ~ 259 (337)
T 2qm8_A 259 R 259 (337)
T ss_dssp H
T ss_pred H
Confidence 3
No 225
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.43 E-value=1.9e-15 Score=157.90 Aligned_cols=138 Identities=14% Similarity=0.083 Sum_probs=88.9
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCC
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDA 360 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~ 360 (1139)
.+++|++++|+||||||||||+++|+|. |+.|.|.++|.++.... ..+..++|++|++. .+.++.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 78899999997653211 01234678888654 3457888875421
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCC--CCCcc--ccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHH
Q 048639 361 DDEQIYNASMMANAHSFISQLPD--QYSTE--LGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQE 436 (1139)
Q Consensus 361 ~~~~~~~~~~~~~~~~~i~~l~~--g~~t~--i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~ 436 (1139)
... . ..+....++.+.. +++.. .+..+..+|+||+||+++||++.++|+++ +|+...+.+.+
T Consensus 77 ---~~~--~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GRY--A-KEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HHH--H-HTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HHH--h-ccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 000 0 0000000011100 01000 12344679999999999999999999876 58876666666
Q ss_pred HHHH
Q 048639 437 ALER 440 (1139)
Q Consensus 437 ~l~~ 440 (1139)
.+..
T Consensus 143 ~~~~ 146 (191)
T 1zp6_A 143 QFAD 146 (191)
T ss_dssp HTTC
T ss_pred HHhc
Confidence 5543
No 226
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.43 E-value=3.6e-14 Score=177.25 Aligned_cols=167 Identities=13% Similarity=0.130 Sum_probs=105.5
Q ss_pred ccEEEEeEEEECCCC----CCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC-CccEEEECCcccCCCChH
Q 048639 884 GRIEFQNIKFNYPSR----PEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP-NEGIILIDGKGIKEYNLR 958 (1139)
Q Consensus 884 g~I~~~nvsf~Y~~~----~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-~~G~I~idG~di~~~~l~ 958 (1139)
+.|.+++. ++|-- ++..+++|+||+ ++|+.++|+|||||||||+++++.++.-+ ..| ..+..
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 34777764 34411 134689999999 99999999999999999999999997532 222 11111
Q ss_pred HHhhhceEEcccccccc-ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 959 RLRSQIGLVQQEPLLFS-CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 959 ~lR~~i~~V~Qdp~LF~-gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
-+.++++++| +|. -++.+|+.. | -+.+|+|+++. +.+.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~----------------------------~--------~stf~~e~~~~-~~il 681 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLAS----------------------------G--------RSTFMVEMTET-ANIL 681 (800)
T ss_dssp -SEEEECCCCE---EEEEEC-----------------------------------------------CHHHHHHH-HHHH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHh----------------------------h--------hhhhhHHHHHH-HHHH
Confidence 1234555554 332 123333211 1 12467777654 4444
Q ss_pred HhcCCCCEEEeeccccCCCHHHHHHH-HHHHHhhCCCCCCccccCCCeEEEEEecCchhhhcCCEEEEEeCCEEEE
Q 048639 1038 TLLKRPAIMLLDEATSALDAESERVI-VSALEALNPKSSSCGELASRTTQITVAHRLATVINSDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~LD~~te~~I-~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti~~~DrI~vl~~G~ive 1112 (1139)
..+.+|+++||||||+++|+.....+ ++.++... ...++|+|++||.++....||++..+++|++..
T Consensus 682 ~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~--------~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 682 HNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLA--------NKIKALTLFATHYFELTQLPEKMEGVANVHLDA 749 (800)
T ss_dssp HHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHH--------HTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEE
T ss_pred HhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHH--------hccCCeEEEEeCCHHHHHHhhhhhceEEEEEEE
Confidence 56899999999999999888665554 55565543 012345999999998777788876677777643
No 227
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.39 E-value=9.9e-16 Score=162.36 Aligned_cols=134 Identities=21% Similarity=0.224 Sum_probs=94.0
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhc----CC
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKV----GN 357 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~----g~ 357 (1139)
.++|++++|+||||||||||+++|+|+++|+ | ..+++|+|+.+.++.+..+|+.. +.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 4789999999999999999999999999875 4 14677888777777776666531 11
Q ss_pred CCC-CHHHHHHHHHHhcHHHHHHhCCCC--CCccccccCCCCChHHHHHHHHH-HHHccCCCEEEEeCCCCCCCHHhHHH
Q 048639 358 MDA-DDEQIYNASMMANAHSFISQLPDQ--YSTELGQRGVQLSGGQKQRIAIA-RAIVKNPPILLLDEATSALDSESEKL 433 (1139)
Q Consensus 358 ~~~-~~~~~~~~~~~~~~~~~i~~l~~g--~~t~i~~~g~~LSgGqkqRi~lA-Ral~~~~~illlDEpts~LD~~~~~~ 433 (1139)
+.. .... +.+++..++.| +++.+.+++..+||||+||+++| |+++.++.++++|||...
T Consensus 80 ~~~~~~~~---------~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~-------- 142 (208)
T 3c8u_A 80 PETFDFEG---------FQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWR-------- 142 (208)
T ss_dssp GGGBCHHH---------HHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGG--------
T ss_pred CchhhHHH---------HHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhH--------
Confidence 111 1111 12234444333 55677899999999999999998 888889888889998420
Q ss_pred HHHHHHHHcCCCeEEEEecCccc
Q 048639 434 VQEALERAMQGRTVILIAHRMST 456 (1139)
Q Consensus 434 i~~~l~~~~~~~tvi~itH~~~~ 456 (1139)
.+... -..+|++.+..+.
T Consensus 143 ---~l~~~--~d~~i~vd~~~~~ 160 (208)
T 3c8u_A 143 ---DLTAI--WDVSIRLEVPMAD 160 (208)
T ss_dssp ---GGGGT--CSEEEEECCCHHH
T ss_pred ---HHHHh--cCEEEEEeCCHHH
Confidence 01111 2367778877765
No 228
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.36 E-value=3.1e-13 Score=157.23 Aligned_cols=150 Identities=18% Similarity=0.284 Sum_probs=103.4
Q ss_pred ccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC----HHH--HhcceEEEecCCCCCc-c
Q 048639 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD----LKS--LRKNIGAVSQEPSLFT-G 347 (1139)
Q Consensus 275 l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~----~~~--~~~~i~~v~Q~~~l~~-~ 347 (1139)
-+++||++++|++++|+|+||||||||++.|+|++.|++|+|.++|.|..... +.. .|.+|+|++|++.++. .
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 46899999999999999999999999999999999999999999887764421 122 3678999999987664 5
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccc----ccc--CCCCChHHHHHHHHHHHHcc-CC-CEEEE
Q 048639 348 SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTEL----GQR--GVQLSGGQKQRIAIARAIVK-NP-PILLL 419 (1139)
Q Consensus 348 ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i----~~~--g~~LSgGqkqRi~lARal~~-~~-~illl 419 (1139)
++++|+.++... |+|..+ |.. -.+|-.--+|++.++|++.. .| .++|.
T Consensus 363 tV~e~l~~a~~~------------------------~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 363 VIFDAIQAAKAR------------------------NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHT------------------------TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHhc------------------------CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 899998764210 111111 110 01122233588999998754 45 46666
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEec
Q 048639 420 DEATSALDSESEKLVQEALERAMQGRTVILIAH 452 (1139)
Q Consensus 420 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 452 (1139)
.+||++.|.... .+.+.+ .-+.|.|++||
T Consensus 419 LDattGq~al~~---ak~f~~-~~~itgvIlTK 447 (503)
T 2yhs_A 419 IDASTGQNAVSQ---AKLFHE-AVGLTGITLTK 447 (503)
T ss_dssp EEGGGTHHHHHH---HHHHHH-HTCCSEEEEEC
T ss_pred ecCcccHHHHHH---HHHHHh-hcCCCEEEEEc
Confidence 668888655422 111221 23789999999
No 229
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.35 E-value=1.1e-12 Score=142.38 Aligned_cols=148 Identities=20% Similarity=0.290 Sum_probs=91.2
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhc--cccC-----CccEEEECCcccC-CCChHHHhhhceEEccccccccccHHHH
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLR--FYDP-----NEGIILIDGKGIK-EYNLRRLRSQIGLVQQEPLLFSCSIRNN 981 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~r--l~~p-----~~G~I~idG~di~-~~~l~~lR~~i~~V~Qdp~LF~gTIreN 981 (1139)
.|++|+.++|+||+|||||||+..|++ ..+| ..|.+++++.+.- .-.+..+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 4554 5789999987631 11233455667777664 4556
Q ss_pred hccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc--CCCCEEEeeccccCCCHH-
Q 048639 982 ICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL--KRPAIMLLDEATSALDAE- 1058 (1139)
Q Consensus 982 L~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl--r~p~ILlLDEaTS~LD~~- 1058 (1139)
+.+..+ .+.++..+. +.-+++++ .+|+++++||+|+.+|++
T Consensus 93 ~~~~~~-~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC-CSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEec-CCHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 554321 222222222 11122222 589999999999999986
Q ss_pred ------HHH-----HHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh-------------------h-cCCEEEEEeC
Q 048639 1059 ------SER-----VIVSALEALNPKSSSCGELASRTTQITVAHRLATV-------------------I-NSDVIVVMDK 1107 (1139)
Q Consensus 1059 ------te~-----~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti-------------------~-~~DrI~vl~~ 1107 (1139)
+++ .+.+.|.+.. . ..++|||+++|-.... . .||+|++|+.
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~-------~-~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~ 208 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLA-------D-EFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRK 208 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHH-------H-HHCCEEEEEC-------------------------CCTTCEEEEEEE
T ss_pred cCCccHHHHHHHHHHHHHHHHHHH-------H-HcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEE
Confidence 432 2333343322 0 1234599999955432 2 4899999986
Q ss_pred C
Q 048639 1108 G 1108 (1139)
Q Consensus 1108 G 1108 (1139)
|
T Consensus 209 ~ 209 (243)
T 1n0w_A 209 G 209 (243)
T ss_dssp C
T ss_pred c
Confidence 5
No 230
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.35 E-value=2.1e-16 Score=164.86 Aligned_cols=171 Identities=17% Similarity=0.084 Sum_probs=107.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccc-cccHHHHhccCCCcCCHH
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYGNEAASEA 992 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF-~gTIreNL~~~~~~~sd~ 992 (1139)
|+.++|+|+|||||||++++|.+ |.+|.+.+||.++... ...++++|++..+ ..|+++|+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 68899999999999999999987 5689999998765432 2467888876433 34777776421
Q ss_pred HHHHHHHHcCchHHHhhCCCCccccccCCCCCC--ChHHHHHHHHHH------HhcCCCCEEEeeccccCCCHHHHHHHH
Q 048639 993 EIVEVSKKANIHDFISSLPDGYDTVVGEKGCQL--SGGQKQRIAIAR------TLLKRPAIMLLDEATSALDAESERVIV 1064 (1139)
Q Consensus 993 ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~L--SgGQrQrlalAR------ALlr~p~ILlLDEaTS~LD~~te~~I~ 1064 (1139)
....+. .+....++.. .+-. .. +.-..+ |+|++|++.++. +++++|+...+|+ ++|+...+. +
T Consensus 66 -~~~~~~-~~~~~ild~~-~~~~-~~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~ 136 (189)
T 2bdt_A 66 -TVNFLL-AQNDVVLDYI-AFPD-EA-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-V 136 (189)
T ss_dssp -HHHHHH-TTCEEEEESC-CCHH-HH-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-H
T ss_pred -HHHHHh-cCCcEEEeec-cCHH-HH-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-H
Confidence 111111 1111011110 0000 00 000124 888888888887 8888888888884 799988777 7
Q ss_pred HHHHhhCCCCCCccccCCCeEEEEEecC-chhhhc-CCEEEEEeCCEEEEecChhHHh
Q 048639 1065 SALEALNPKSSSCGELASRTTQITVAHR-LATVIN-SDVIVVMDKGEVVEMGSHSTLV 1120 (1139)
Q Consensus 1065 ~~l~~~~~~~~~~~~~~~~tTvI~IaHr-l~ti~~-~DrI~vl~~G~ive~G~~~eLl 1120 (1139)
+.+++.. ....|+|..+|. ++++.. ||+|+ ++|+++..|+++-|-
T Consensus 137 ~~~~~~~---------~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 137 EEFESKG---------IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HHHHHTT---------CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HHHhhcC---------CCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 7777653 223348889999 999887 99998 999999999988774
No 231
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.35 E-value=7.8e-13 Score=143.45 Aligned_cols=146 Identities=17% Similarity=0.253 Sum_probs=89.0
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHh--ccCC-----CccEEEECCccCCC-CCHHHHhcceEEEecCCCCCcccHHHH
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVAR--FYDP-----SNGDILIDSLNIKD-LDLKSLRKNIGAVSQEPSLFTGSLMDN 352 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g--~~~~-----~~G~i~~~g~~~~~-~~~~~~~~~i~~v~Q~~~l~~~ti~~n 352 (1139)
-+++|++++|+||||||||||++.+++ ..+| ..|.+++++.+... .....+.+++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 588999999999999999999999999 4555 57888888865211 1122344456665543 4555
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHH-
Q 048639 353 IKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV--KNPPILLLDEATSALDSE- 429 (1139)
Q Consensus 353 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~--~~~~illlDEpts~LD~~- 429 (1139)
+.+..+ .+.++..+. +.-++.++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~-~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQL-----------------------------------LYQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC-CSHHHHHHH-----------------------------------HHHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEec-CCHHHHHHH-----------------------------------HHHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 544322 122221111 11111111 689999999999999985
Q ss_pred ------hH-----HHHHHHHHHHc--CCCeEEEEecCccc-------------------hh-ccCEEEEEeCc
Q 048639 430 ------SE-----KLVQEALERAM--QGRTVILIAHRMST-------------------IV-NADMIAVVEDG 469 (1139)
Q Consensus 430 ------~~-----~~i~~~l~~~~--~~~tvi~itH~~~~-------------------~~-~~d~i~~l~~G 469 (1139)
.+ ..+...+.++. .++|||+++|.... +. .||.+++|+.|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 32 23344444432 38999999995543 22 48999999865
No 232
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.32 E-value=9.9e-14 Score=139.16 Aligned_cols=88 Identities=15% Similarity=0.184 Sum_probs=72.2
Q ss_pred EeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEe
Q 048639 260 RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVS 339 (1139)
Q Consensus 260 ~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 339 (1139)
+|+++.|+ +..+++++||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++.+. ...+ .+++
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMI 81 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEE
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccce
Confidence 35566664 245899999999999999999999999999999999999 9999999999887421 1111 2899
Q ss_pred cCCCCCcccHHHHHh-cC
Q 048639 340 QEPSLFTGSLMDNIK-VG 356 (1139)
Q Consensus 340 Q~~~l~~~ti~~ni~-~g 356 (1139)
|++.++.-|+.||+. +|
T Consensus 82 q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 82 YHFDLYRLADPEELEFMG 99 (158)
T ss_dssp EEEECTTCSCTTHHHHST
T ss_pred eccccccCCcHHHHHHcC
Confidence 999888779999985 44
No 233
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.32 E-value=9.5e-15 Score=169.51 Aligned_cols=142 Identities=18% Similarity=0.231 Sum_probs=101.8
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCC----ChHHHh
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY----NLRRLR 961 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~----~l~~lR 961 (1139)
++++|+++.|. ...+|+++ +. ++|+.++|+|||||||||++++|+++++|.+|+|.++|.++... +...++
T Consensus 144 ~~l~~Lg~~~~---~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 144 LDLHSLGMTAH---NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCGGGSCCCHH---HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCHHHcCCCHH---HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc
Confidence 45667776663 23578888 53 89999999999999999999999999999999999999887421 112345
Q ss_pred hhceEEc---------cccccc--c-----ccHHHHhccCCC---------cCCHHHHHHHHHHcCchHHHhhCCCCccc
Q 048639 962 SQIGLVQ---------QEPLLF--S-----CSIRNNICYGNE---------AASEAEIVEVSKKANIHDFISSLPDGYDT 1016 (1139)
Q Consensus 962 ~~i~~V~---------Qdp~LF--~-----gTIreNL~~~~~---------~~sd~ei~~al~~~~l~~~i~~lp~gldt 1016 (1139)
+++++.+ |+|.++ . .|+++|+..+.. ..+..+..+.+...++.++.
T Consensus 219 ~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--------- 289 (418)
T 1p9r_A 219 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--------- 289 (418)
T ss_dssp GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH---------
T ss_pred cccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH---------
Confidence 5666644 999653 2 378888764210 11223444556666665432
Q ss_pred cccCCCCCCChHHHHHHHHHHHhcCCCCEEE
Q 048639 1017 VVGEKGCQLSGGQKQRIAIARTLLKRPAIML 1047 (1139)
Q Consensus 1017 ~v~e~G~~LSgGQrQrlalARALlr~p~ILl 1047 (1139)
...+|||||+|| |||+|+.+|++..
T Consensus 290 ----~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 290 ----ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp ----HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred ----HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 124799999999 9999999999875
No 234
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.32 E-value=3.9e-15 Score=155.24 Aligned_cols=164 Identities=15% Similarity=0.080 Sum_probs=106.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCC-cccHHHHHhcCCCCCCHH
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLF-TGSLMDNIKVGNMDADDE 363 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~-~~ti~~ni~~g~~~~~~~ 363 (1139)
|++++|+||||||||||++.|++ |.+|.+.++|.++... ..+++++|.+... ..++++|+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 68999999999999999999997 6789999988654321 2457777765332 23666666431
Q ss_pred HHHHHHHHhcHHHHHHh-CCCCCCcccc----ccCCCC--ChHHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHh
Q 048639 364 QIYNASMMANAHSFISQ-LPDQYSTELG----QRGVQL--SGGQKQRIAIAR------AIVKNPPILLLDEATSALDSES 430 (1139)
Q Consensus 364 ~~~~~~~~~~~~~~i~~-l~~g~~t~i~----~~g~~L--SgGqkqRi~lAR------al~~~~~illlDEpts~LD~~~ 430 (1139)
+. ..... .+.=++...+ +....+ |+|++|++.++. +++.+|+...+|+ ++|+..
T Consensus 66 -----~~-----~~~~~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 66 -----TV-----NFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp -----HH-----HHHHTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred -----HH-----HHHhcCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 00 01110 0000011001 111234 889888888888 8888888888884 799987
Q ss_pred HHHHHHHHHHHc-CCCeEEEEecC-ccchhc-cCEEEEEeCcEEEEecChhhh
Q 048639 431 EKLVQEALERAM-QGRTVILIAHR-MSTIVN-ADMIAVVEDGQVTETGTHHSL 480 (1139)
Q Consensus 431 ~~~i~~~l~~~~-~~~tvi~itH~-~~~~~~-~d~i~~l~~G~i~~~g~~~~l 480 (1139)
... .+.+..+. .+.++|.+||. ++.+.. ||+|+ ++|+++..|+++-+
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 766 77776654 36799999999 999876 99998 99999999988765
No 235
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.32 E-value=1.5e-12 Score=151.49 Aligned_cols=158 Identities=18% Similarity=0.253 Sum_probs=102.2
Q ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCC----hHH--HhhhceEEccccccc-ccc
Q 048639 905 NNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYN----LRR--LRSQIGLVQQEPLLF-SCS 977 (1139)
Q Consensus 905 ~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~----l~~--lR~~i~~V~Qdp~LF-~gT 977 (1139)
+++||++++|++++|||+||||||||++.|.|++.|.+|+|.++|.|+.... +.. .|+++++|+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5688999999999999999999999999999999999999999988875431 222 477899999998655 568
Q ss_pred HHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC-C-CEEEeeccccCC
Q 048639 978 IRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR-P-AIMLLDEATSAL 1055 (1139)
Q Consensus 978 IreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~-p-~ILlLDEaTS~L 1055 (1139)
+++|+.++.. .+.+-.+-..++.+... .++-.--+|++.++|++... | .+|+..+||++.
T Consensus 364 V~e~l~~a~~-------------~~~DvVLIDTaGrl~~~-----~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq 425 (503)
T 2yhs_A 364 IFDAIQAAKA-------------RNIDVLIADTAGRLQNK-----SHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ 425 (503)
T ss_dssp HHHHHHHHHH-------------TTCSEEEECCCCSCCCH-----HHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH
T ss_pred HHHHHHHHHh-------------cCCCEEEEeCCCccchh-----hhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH
Confidence 9999875421 11110111111111110 11222335788999987643 5 355455588775
Q ss_pred CHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchh
Q 048639 1056 DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLAT 1095 (1139)
Q Consensus 1056 D~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~t 1095 (1139)
|.... .+.+++. .+-| .+++|| ++.
T Consensus 426 ~al~~---ak~f~~~----------~~it-gvIlTK-LD~ 450 (503)
T 2yhs_A 426 NAVSQ---AKLFHEA----------VGLT-GITLTK-LDG 450 (503)
T ss_dssp HHHHH---HHHHHHH----------TCCS-EEEEEC-GGG
T ss_pred HHHHH---HHHHHhh----------cCCC-EEEEEc-CCC
Confidence 54322 2223322 1234 889999 443
No 236
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.29 E-value=1.1e-14 Score=173.47 Aligned_cols=174 Identities=14% Similarity=0.190 Sum_probs=116.7
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEcccccccc--ccHH
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFS--CSIR 979 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~--gTIr 979 (1139)
++++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.|+|.+--.++- +..+++++|++. .. .|.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 47899999999999999999999999999999999999999999999876322221 345677777765 33 2566
Q ss_pred HHhccC---CC------cCCHHHHHHHHHHcCc-------------hHHHhh---CCCCcccccc-------CCCCCCCh
Q 048639 980 NNICYG---NE------AASEAEIVEVSKKANI-------------HDFISS---LPDGYDTVVG-------EKGCQLSG 1027 (1139)
Q Consensus 980 eNL~~~---~~------~~sd~ei~~al~~~~l-------------~~~i~~---lp~gldt~v~-------e~G~~LSg 1027 (1139)
+++... +| +.++.|...+++.++. .+.+.+ .|.|+...+. .....+|+
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 554321 12 3455566666655421 122222 2223322221 12335799
Q ss_pred HHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEE--EecCchhhhc-CC
Q 048639 1028 GQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQIT--VAHRLATVIN-SD 1100 (1139)
Q Consensus 1028 GQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~--IaHrl~ti~~-~D 1100 (1139)
|||||.|+|. + | |+++|+++...+++.|.++. ..++|++. +||+++.+.. |+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~---------~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWD---------PKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEE---------TTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEc---------ccCCEEEEcccHHHHHHHHHHcC
Confidence 9999988762 1 7 99999988877777666543 22334764 8999998865 54
No 237
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.29 E-value=7.7e-13 Score=149.42 Aligned_cols=122 Identities=16% Similarity=0.119 Sum_probs=83.3
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC-CCccEEEEC-CccCCCCCHHHHhcceEEEecCCCCCcc-cH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD-PSNGDILID-SLNIKDLDLKSLRKNIGAVSQEPSLFTG-SL 349 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-~~~G~i~~~-g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-ti 349 (1139)
.-++++++. .+|++++|+||||||||||+++|+|+.. |..|+|.++ |.+.. ...+..+++++|++++++. ++
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 357888875 4899999999999999999999999999 999999987 75542 1345679999999998865 89
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH
Q 048639 350 MDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI 410 (1139)
Q Consensus 350 ~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal 410 (1139)
+++-.. ....+++.+ ...++++.+ |+....+....+|| ||+||++||+++
T Consensus 279 ~e~~l~---~l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 279 REFGLW---HLEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp HTCCCC---CCCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred HHhhhc---CCCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 986332 233333322 122334444 44445566778999 999999999975
No 238
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.28 E-value=1.4e-13 Score=156.32 Aligned_cols=177 Identities=12% Similarity=0.186 Sum_probs=115.0
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC----HHHHhc
Q 048639 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD----LKSLRK 333 (1139)
Q Consensus 258 ~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~----~~~~~~ 333 (1139)
+++|+++.|+. ..+|+++||++++|++++|+||||||||||++.|+|++.|++|+|.+.|.++.... ....+.
T Consensus 31 e~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 31 ESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp TCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred eeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 34455566642 35899999999999999999999999999999999999999999999998874322 123467
Q ss_pred ceEEEecCCCCCcc-------------cHHHHHh-c---CCC---------CCCHHHHHHHHHH-------------hcH
Q 048639 334 NIGAVSQEPSLFTG-------------SLMDNIK-V---GNM---------DADDEQIYNASMM-------------ANA 374 (1139)
Q Consensus 334 ~i~~v~Q~~~l~~~-------------ti~~ni~-~---g~~---------~~~~~~~~~~~~~-------------~~~ 374 (1139)
++++++|++.+|.. +++|.+. + +.+ ..+...+.+.+.. ..+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 89999999988742 2233221 0 000 0011111000000 000
Q ss_pred HHHHHhCCCCCC-ccccc-cCCCCChHHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHhHHHHHHHHHHH
Q 048639 375 HSFISQLPDQYS-TELGQ-RGVQLSGGQKQRIAIARAIVK------NPPILLLDEATSALDSESEKLVQEALERA 441 (1139)
Q Consensus 375 ~~~i~~l~~g~~-t~i~~-~g~~LSgGqkqRi~lARal~~------~~~illlDEpts~LD~~~~~~i~~~l~~~ 441 (1139)
.+.+...|+-+- +.+.. ....+|+|++|++..|++++. +|+++. |||+|......+.+.|.+.
T Consensus 188 ~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 000111111000 11111 124579999999999999987 688887 9999999999998888764
No 239
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.28 E-value=2.2e-13 Score=136.62 Aligned_cols=87 Identities=16% Similarity=0.139 Sum_probs=72.4
Q ss_pred EeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEc
Q 048639 889 QNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQ 968 (1139)
Q Consensus 889 ~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~ 968 (1139)
+|++++|. +..+++++||+|++|+.++|+||+|||||||+++|.|++ |.+|+|.++|.++... ...+ .+++
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMI 81 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEE
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccce
Confidence 45566673 246899999999999999999999999999999999999 9999999999988531 1112 2899
Q ss_pred cccccccccHHHHhcc
Q 048639 969 QEPLLFSCSIRNNICY 984 (1139)
Q Consensus 969 Qdp~LF~gTIreNL~~ 984 (1139)
|++.+|.-|+.+|+.+
T Consensus 82 q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 82 YHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEECTTCSCTTHHHH
T ss_pred eccccccCCcHHHHHH
Confidence 9998887799999853
No 240
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.28 E-value=6.1e-12 Score=145.31 Aligned_cols=75 Identities=31% Similarity=0.377 Sum_probs=67.7
Q ss_pred CCCCChHHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccchhccCEEEE
Q 048639 393 GVQLSGGQKQRI------AIARAIVKN-PPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTIVNADMIAV 465 (1139)
Q Consensus 393 g~~LSgGqkqRi------~lARal~~~-~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~ 465 (1139)
...||||||||+ ++|||+..+ |+++||||||++||+.+...+.+.+.++.++.++|++||+++....||++++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~ 357 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIIN 357 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEE
Confidence 368999999988 668999999 9999999999999999999999999887666799999999986556999999
Q ss_pred Ee
Q 048639 466 VE 467 (1139)
Q Consensus 466 l~ 467 (1139)
|+
T Consensus 358 l~ 359 (371)
T 3auy_A 358 VK 359 (371)
T ss_dssp EE
T ss_pred EE
Confidence 97
No 241
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.27 E-value=8.7e-13 Score=148.96 Aligned_cols=122 Identities=19% Similarity=0.138 Sum_probs=78.9
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc-CCccEEEEC-CcccCCCChHHHhhhceEEccccccccc-cHH
Q 048639 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD-PNEGIILID-GKGIKEYNLRRLRSQIGLVQQEPLLFSC-SIR 979 (1139)
Q Consensus 903 vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-p~~G~I~id-G~di~~~~l~~lR~~i~~V~Qdp~LF~g-TIr 979 (1139)
-++++++. .+|++++|+|+||||||||+++|.|+.. |..|+|.++ |.+.. ...+++++++||++.+++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46777764 4799999999999999999999999999 999999997 76643 2346789999999988865 888
Q ss_pred HHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 048639 980 NNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL 1040 (1139)
Q Consensus 980 eNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl 1040 (1139)
++-.. ..+.+++.+. ..++.+.+ |+....+....++| ||+||++||++++
T Consensus 280 e~~l~---~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 280 EFGLW---HLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp TCCCC---CCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred Hhhhc---CCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 86332 2344444321 22222222 22222223345799 9999999999863
No 242
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.26 E-value=2e-13 Score=148.65 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=97.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHH---hccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcc-cHHHHHhcC---
Q 048639 284 AGKMVALVGSSGCGKSTVISLVA---RFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIKVG--- 356 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~---g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-ti~~ni~~g--- 356 (1139)
++++++|+||||||||||+++|+ |+..|+.|+|.++|.+.. ..+...+.+++|++.+++. ++.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999 999999999988776532 1234456777888776654 888888541
Q ss_pred ----------CCCCCHHHHHHHHHHhcHHHHHHhCCC-C------------CCccccccCCCCChHHHHHHHHHHHH-cc
Q 048639 357 ----------NMDADDEQIYNASMMANAHSFISQLPD-Q------------YSTELGQRGVQLSGGQKQRIAIARAI-VK 412 (1139)
Q Consensus 357 ----------~~~~~~~~~~~~~~~~~~~~~i~~l~~-g------------~~t~i~~~g~~LSgGqkqRi~lARal-~~ 412 (1139)
.+ ...++.. .+..+.. + ..-....+...||| |+ ||+ +.
T Consensus 102 ~~~~~~il~g~~-~~~~~~~----------~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~ 163 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAE----------ALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN 163 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHH----------HHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS
T ss_pred cCCCeEEEECCC-CCHHHHH----------HHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC
Confidence 11 1111111 1111110 1 11112445668999 66 888 99
Q ss_pred CCCEEEEe----CCCCCCCHHhHHHHHHHHHHHc
Q 048639 413 NPPILLLD----EATSALDSESEKLVQEALERAM 442 (1139)
Q Consensus 413 ~~~illlD----Epts~LD~~~~~~i~~~l~~~~ 442 (1139)
+|++++|| |||++||+.+...+.+.+..+.
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHHH
Confidence 99999999 9999999999998888887654
No 243
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.25 E-value=3.8e-14 Score=168.92 Aligned_cols=174 Identities=13% Similarity=0.149 Sum_probs=115.1
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCc-ccHHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFT-GSLMD 351 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ti~~ 351 (1139)
.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--..+. ...++++.|...... .|.++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence 47889999999999999999999999999999999999999999998865222211 345777777655221 26666
Q ss_pred HHhcC---CC------CCCHHHHHHHHHHh-------------cHHHHHHhC---CCCCCcccc-------ccCCCCChH
Q 048639 352 NIKVG---NM------DADDEQIYNASMMA-------------NAHSFISQL---PDQYSTELG-------QRGVQLSGG 399 (1139)
Q Consensus 352 ni~~g---~~------~~~~~~~~~~~~~~-------------~~~~~i~~l---~~g~~t~i~-------~~g~~LSgG 399 (1139)
++... +| +.+..+...+.... .+.+.+.++ |.+....+. .....+|||
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 65432 22 23333333333222 123333332 223222111 234468999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC-CCeEEE--EecCccchhc-cC
Q 048639 400 QKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ-GRTVIL--IAHRMSTIVN-AD 461 (1139)
Q Consensus 400 qkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~--itH~~~~~~~-~d 461 (1139)
||||.++|. + | |++||+.+.+.+.+.+.++.+ ++|+++ +||+++.+.. |+
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 999988752 1 6 999999877666666655543 788875 8999998764 54
No 244
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.25 E-value=1.1e-14 Score=169.12 Aligned_cols=129 Identities=13% Similarity=0.111 Sum_probs=88.4
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCC----CHHHHhcceEEEe---------c
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL----DLKSLRKNIGAVS---------Q 340 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~----~~~~~~~~i~~v~---------Q 340 (1139)
+|+++ + .++|++++|+||||||||||+++|+|+++|++|+|.+.|.++... +...++.++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 378999999999999999999999999999999999988876421 1122344566655 9
Q ss_pred CCCCC--c-----ccHHHHHhcCCC--------CC-CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHH
Q 048639 341 EPSLF--T-----GSLMDNIKVGNM--------DA-DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRI 404 (1139)
Q Consensus 341 ~~~l~--~-----~ti~~ni~~g~~--------~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi 404 (1139)
+|.++ . .|+++|+.++.. .. +..+....+ ..+ |++.. ....+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL---------~~l--gl~~~--~~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRL---------RDM--GIEPF--LISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHH---------HHH--TCCHH--HHHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHH---------HHc--CCcHH--HHHHHHHHHHHHH-
Confidence 99763 2 388888875321 11 111222211 111 22221 1456899999999
Q ss_pred HHHHHHccCCCEEEE
Q 048639 405 AIARAIVKNPPILLL 419 (1139)
Q Consensus 405 ~lARal~~~~~illl 419 (1139)
|||+++.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
No 245
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.24 E-value=5.9e-12 Score=144.88 Aligned_cols=138 Identities=21% Similarity=0.273 Sum_probs=79.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-cccCCccEEEECCcccCCCChHHHhhhceEEcccccccc-ccHHHHhccCCCcCCHHH
Q 048639 916 KVALVGPSGAGKSSVLALLLR-FYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICYGNEAASEAE 993 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r-l~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~-gTIreNL~~~~~~~sd~e 993 (1139)
.+.|+||+|+||||+++++.+ ++.|..|.|.++|.+...... -+..+++++|++++.- .+ +.+ ......
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPS-----DMG--NNDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHh-----hcC--CcchHH
Confidence 399999999999999999999 899999999999988764332 3678999999987531 11 011 111123
Q ss_pred HHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCC
Q 048639 994 IVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPK 1073 (1139)
Q Consensus 994 i~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~ 1073 (1139)
+.+.++.+.- . .+++..+ .||| +..+|+|+|+|||++ ||.++...+.+.+++..
T Consensus 109 ~~~~i~~~~~-----~--~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-- 162 (354)
T 1sxj_E 109 IQELLKEVAQ-----M--EQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-- 162 (354)
T ss_dssp HHHHHHHHTT-----T--TC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST--
T ss_pred HHHHHHHHHH-----h--ccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc--
Confidence 4443333211 1 1122111 4666 788999999999999 99999999999998743
Q ss_pred CCCccccCCCeEEEEEecCchhh
Q 048639 1074 SSSCGELASRTTQITVAHRLATV 1096 (1139)
Q Consensus 1074 ~~~~~~~~~~tTvI~IaHrl~ti 1096 (1139)
.++++|++||+++.+
T Consensus 163 --------~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 163 --------KNIRLIMVCDSMSPI 177 (354)
T ss_dssp --------TTEEEEEEESCSCSS
T ss_pred --------CCCEEEEEeCCHHHH
Confidence 346799999998754
No 246
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.24 E-value=4.5e-13 Score=145.80 Aligned_cols=146 Identities=16% Similarity=0.230 Sum_probs=96.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHh---ccccCCccEEEECCcccCCCChHHHhhhceEEcccccccc-ccHHHHhcc----
Q 048639 913 PGLKVALVGPSGAGKSSVLALLL---RFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFS-CSIRNNICY---- 984 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~---rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~-gTIreNL~~---- 984 (1139)
++++++|+|++||||||++++|. |+..|+.|+|.++|.+.. ..+...+..++|++.++. .++.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999887642 234556777788876554 478888743
Q ss_pred ---------CCCcCCHHHHHHHHH--HcCchHHHhhCCC-C-ccccccCCCCCCChHHHHHHHHHHHh-cCCCCEEEee-
Q 048639 985 ---------GNEAASEAEIVEVSK--KANIHDFISSLPD-G-YDTVVGEKGCQLSGGQKQRIAIARTL-LKRPAIMLLD- 1049 (1139)
Q Consensus 985 ---------~~~~~sd~ei~~al~--~~~l~~~i~~lp~-g-ldt~v~e~G~~LSgGQrQrlalARAL-lr~p~ILlLD- 1049 (1139)
+.+ .+.++.....+ ..++--+++ .|. - ++.........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~l~~~~~~~~vi~L~-~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~ 172 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEALDKICEVDLVISLN-IPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDD 172 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHHHHTTCCCCEEEEEE-CCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCT
T ss_pred cCCCeEEEECCC-CCHHHHHHHHhhcCCCEEEEEE-CCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccc
Confidence 111 12222222211 111000000 000 0 00011222346888 55 888 9999999999
Q ss_pred ---ccccCCCHHHHHHHHHHHHhhC
Q 048639 1050 ---EATSALDAESERVIVSALEALN 1071 (1139)
Q Consensus 1050 ---EaTS~LD~~te~~I~~~l~~~~ 1071 (1139)
|||+++|..+.+.+++.++++.
T Consensus 173 ~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 173 VTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp TTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999998653
No 247
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.24 E-value=5.8e-12 Score=145.30 Aligned_cols=147 Identities=15% Similarity=0.218 Sum_probs=94.3
Q ss_pred EecCCCEEEEECCCCCcHHHHHHH--HHhccCCCcc-----EEEECCccCC-CCCHHHHhcceEEEecCCCCCcccHHHH
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISL--VARFYDPSNG-----DILIDSLNIK-DLDLKSLRKNIGAVSQEPSLFTGSLMDN 352 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~--l~g~~~~~~G-----~i~~~g~~~~-~~~~~~~~~~i~~v~Q~~~l~~~ti~~n 352 (1139)
-|++|++++|+||||||||||++. +.+..+++.| .+++++.+.. ......+.+++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 588999999999999999999994 4577776444 7888887631 1122334455666554 56777
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHHh
Q 048639 353 IKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAI--VKNPPILLLDEATSALDSES 430 (1139)
Q Consensus 353 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal--~~~~~illlDEpts~LD~~~ 430 (1139)
+.+..+. ..++. .+.+.-++.+ -.+|+++++|||++.+|++.
T Consensus 247 i~~~~~~-~~~~~-----------------------------------~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARAY-NADHQ-----------------------------------LRLLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEECC-SHHHH-----------------------------------HHHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEeccC-ChHHH-----------------------------------HHHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 7765432 11111 1111111111 24799999999999999753
Q ss_pred H------------HHHHHHHHHHc--CCCeEEEEecCc-------------------cchhc-cCEEEEEeCcE
Q 048639 431 E------------KLVQEALERAM--QGRTVILIAHRM-------------------STIVN-ADMIAVVEDGQ 470 (1139)
Q Consensus 431 ~------------~~i~~~l~~~~--~~~tvi~itH~~-------------------~~~~~-~d~i~~l~~G~ 470 (1139)
. ..+.+.|+++. .+.|||+|+|.. ..+.+ +|.++.|++++
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 2 44566666653 389999999982 12344 89999998763
No 248
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.23 E-value=1.7e-11 Score=141.51 Aligned_cols=74 Identities=26% Similarity=0.366 Sum_probs=65.1
Q ss_pred CCCChHHHHHH------HHHHHhcCC-CCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchh
Q 048639 1023 CQLSGGQKQRI------AIARTLLKR-PAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLAT 1095 (1139)
Q Consensus 1023 ~~LSgGQrQrl------alARALlr~-p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~t 1095 (1139)
..|||||+||+ |+|||+..+ |++|||||||++||+++...+.+.|++.. .++ +||+|||+++.
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~---------~~~-~vi~~th~~~~ 348 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK---------SIP-QMIIITHHREL 348 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC---------SCS-EEEEEESCGGG
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc---------cCC-eEEEEEChHHH
Confidence 47999999987 678999999 99999999999999999999999998753 233 49999999986
Q ss_pred hhcCCEEEEEe
Q 048639 1096 VINSDVIVVMD 1106 (1139)
Q Consensus 1096 i~~~DrI~vl~ 1106 (1139)
...||++++|+
T Consensus 349 ~~~~d~~~~l~ 359 (371)
T 3auy_A 349 EDVADVIINVK 359 (371)
T ss_dssp GGGCSEEEEEE
T ss_pred HhhCCEEEEEE
Confidence 55699999997
No 249
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.22 E-value=6.5e-12 Score=141.23 Aligned_cols=142 Identities=15% Similarity=0.106 Sum_probs=95.6
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHH----HHhc--ceEEEecCCCCCcc-cHHHHH
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLK----SLRK--NIGAVSQEPSLFTG-SLMDNI 353 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~----~~~~--~i~~v~Q~~~l~~~-ti~~ni 353 (1139)
..++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+...... .+++ .+.+++|++.+++. +++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999998765532 2333 45699999888764 899998
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCc-cccccCC--CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHh
Q 048639 354 KVGNMDADDEQIYNASMMANAHSFISQLPDQYST-ELGQRGV--QLSGGQKQRIAIARAIVKNPPILLLDEATSALDSES 430 (1139)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~i~~~g~--~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~ 430 (1139)
.++.. . +++. .+...|. .-..=.++.-.++|++..++++++||.+|. .|.
T Consensus 205 ~~~~~-------------~-----------~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~-- 257 (328)
T 3e70_C 205 QHAKA-------------R-----------GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAI-- 257 (328)
T ss_dssp HHHHH-------------H-----------TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THH--
T ss_pred HHHHh-------------c-----------cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHH--
Confidence 75310 0 1111 0111110 001112233358999998888888885554 332
Q ss_pred HHHHHHHHHHHc--CCCeEEEEecC
Q 048639 431 EKLVQEALERAM--QGRTVILIAHR 453 (1139)
Q Consensus 431 ~~~i~~~l~~~~--~~~tvi~itH~ 453 (1139)
.+.++.+. .+.|.|++||-
T Consensus 258 ----~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 258 ----VEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp ----HHHHHHHHHHSCCCEEEEECG
T ss_pred ----HHHHHHHHHhcCCCEEEEeCc
Confidence 22233222 37899999994
No 250
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.21 E-value=1.5e-11 Score=122.26 Aligned_cols=91 Identities=20% Similarity=0.286 Sum_probs=68.8
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCcc--EEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG--DILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMD 351 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G--~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ 351 (1139)
+|+++ +|+.++|+||+|||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 46666 8999999999999999999999999987 46 555544322110
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhH
Q 048639 352 NIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE 431 (1139)
Q Consensus 352 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~ 431 (1139)
+++.+|++|++|||++ +|...+
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 2457899999999998 666557
Q ss_pred HHHHHHHHHHc-CCCe-EEEEecC
Q 048639 432 KLVQEALERAM-QGRT-VILIAHR 453 (1139)
Q Consensus 432 ~~i~~~l~~~~-~~~t-vi~itH~ 453 (1139)
+.+.+.+.... ++++ +|++||.
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCC
Confidence 77888887654 4678 7777774
No 251
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.21 E-value=7.4e-13 Score=148.96 Aligned_cols=166 Identities=16% Similarity=0.138 Sum_probs=107.0
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChH----HHhhhce--EEcccccccc-ccHHHHh
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLR----RLRSQIG--LVQQEPLLFS-CSIRNNI 982 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~----~lR~~i~--~V~Qdp~LF~-gTIreNL 982 (1139)
..++|+.++|||||||||||+++.|.|++.|.+|+|.++|.|+...... .++++++ +++|++.+++ .|+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 4478999999999999999999999999999999999999999876533 3455555 8999987764 5888998
Q ss_pred ccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHH
Q 048639 983 CYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERV 1062 (1139)
Q Consensus 983 ~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~ 1062 (1139)
.++.. + +. +.+ =+||. |... .-..=-+++-.++|++..++++++||.+|. .|...
T Consensus 205 ~~~~~-----------~--~~-d~v-----liDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~--- 259 (328)
T 3e70_C 205 QHAKA-----------R--GI-DVV-----LIDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE--- 259 (328)
T ss_dssp HHHHH-----------H--TC-SEE-----EEEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH---
T ss_pred HHHHh-----------c--cc-hhh-----HHhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH---
Confidence 64310 0 00 000 01211 1000 001112445569999999999999996665 23221
Q ss_pred HHHHHHhhCCCCCCccccCCCeEEEEEecCchhh----------hcCCEEEEEeCCEEE
Q 048639 1063 IVSALEALNPKSSSCGELASRTTQITVAHRLATV----------INSDVIVVMDKGEVV 1111 (1139)
Q Consensus 1063 I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti----------~~~DrI~vl~~G~iv 1111 (1139)
+.+.+.+. .+. |+|++||--.+. ...-.|..+..|+-+
T Consensus 260 ~~~~~~~~----------~~i-t~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 260 QARQFNEA----------VKI-DGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHHHH----------SCC-CEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHHHh----------cCC-CEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 11223221 233 499999943321 113578888888765
No 252
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.21 E-value=6.8e-12 Score=144.32 Aligned_cols=139 Identities=21% Similarity=0.260 Sum_probs=79.5
Q ss_pred CEEEEECCCCCcHHHHHHHHHh-ccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCC-cccHHHHHhcCCCCCCHH
Q 048639 286 KMVALVGSSGCGKSTVISLVAR-FYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLF-TGSLMDNIKVGNMDADDE 363 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g-~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~-~~ti~~ni~~g~~~~~~~ 363 (1139)
..+.|+||+|+||||+++.++| ++.|+.|.+.++|.+..... ..+..+++++|.+++. +.+- .+. ....
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~ 107 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD-----MGN--NDRI 107 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh-----cCC--cchH
Confidence 3499999999999999999999 78999999999998765322 2256799999988652 1110 010 0111
Q ss_pred HHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC
Q 048639 364 QIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQ 443 (1139)
Q Consensus 364 ~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~ 443 (1139)
.+.+..+ ++.... +++..+ .||| +..+|+++|+|||++ ||+.+...+.+.+.+..+
T Consensus 108 ~~~~~i~-----~~~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~ 163 (354)
T 1sxj_E 108 VIQELLK-----EVAQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSK 163 (354)
T ss_dssp HHHHHHH-----HHTTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTT
T ss_pred HHHHHHH-----HHHHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcC
Confidence 1211111 111111 111111 5676 788999999999999 999999999999988767
Q ss_pred CCeEEEEecCccch
Q 048639 444 GRTVILIAHRMSTI 457 (1139)
Q Consensus 444 ~~tvi~itH~~~~~ 457 (1139)
+.++|++||+++.+
T Consensus 164 ~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 164 NIRLIMVCDSMSPI 177 (354)
T ss_dssp TEEEEEEESCSCSS
T ss_pred CCEEEEEeCCHHHH
Confidence 88999999998754
No 253
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.20 E-value=2.2e-11 Score=140.50 Aligned_cols=149 Identities=18% Similarity=0.260 Sum_probs=94.7
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHH--HhccccCCc-----cEEEECCccc-CCCChHHHhhhceEEccccccccccHHHH
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLAL--LLRFYDPNE-----GIILIDGKGI-KEYNLRRLRSQIGLVQQEPLLFSCSIRNN 981 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~l--L~rl~~p~~-----G~I~idG~di-~~~~l~~lR~~i~~V~Qdp~LF~gTIreN 981 (1139)
-|++|+.++|+||+|||||||+.. +.+..+++. +.|+||+.+. ....+..+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 689999999999999999999994 456666543 4899999873 22223345567777666 56677
Q ss_pred hccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc--CCCCEEEeeccccCCCHHH
Q 048639 982 ICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL--KRPAIMLLDEATSALDAES 1059 (1139)
Q Consensus 982 L~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl--r~p~ILlLDEaTS~LD~~t 1059 (1139)
+.+..+ .+-++ +.+++.-+++++ .+|+++++||+|+.+|.+.
T Consensus 247 i~~~~~-~~~~~-----------------------------------~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARA-YNADH-----------------------------------QLRLLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEEC-CSHHH-----------------------------------HHHHHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEecc-CChHH-----------------------------------HHHHHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 765432 11111 222222222222 4799999999999999764
Q ss_pred H------------HHHHHHHHhhCCCCCCccccCCCeEEEEEecCch-------------------hhhc-CCEEEEEeC
Q 048639 1060 E------------RVIVSALEALNPKSSSCGELASRTTQITVAHRLA-------------------TVIN-SDVIVVMDK 1107 (1139)
Q Consensus 1060 e------------~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~-------------------ti~~-~DrI~vl~~ 1107 (1139)
. ..+.+.|+++. . ..++|||+|+|-.. .+.+ +|.+++|+.
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~la-------k-e~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~ 362 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLA-------D-QFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKK 362 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHH-------H-HHCCEEEEEEEC--------------------CHHHHHCSEEEEEEE
T ss_pred cCccchHHHHHHHHHHHHHHHHHH-------H-HcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEe
Confidence 3 44556665543 1 12345999999732 2233 899999987
Q ss_pred CE
Q 048639 1108 GE 1109 (1139)
Q Consensus 1108 G~ 1109 (1139)
|+
T Consensus 363 ~~ 364 (400)
T 3lda_A 363 GK 364 (400)
T ss_dssp CS
T ss_pred cC
Confidence 63
No 254
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.17 E-value=2.6e-11 Score=120.60 Aligned_cols=44 Identities=30% Similarity=0.348 Sum_probs=37.1
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc--EEEECCccc
Q 048639 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG--IILIDGKGI 952 (1139)
Q Consensus 903 vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G--~I~idG~di 952 (1139)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+++++.++
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~ 75 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASM 75 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTS
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHh
Confidence 57766 8999999999999999999999999987 57 666666543
No 255
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.16 E-value=3.1e-13 Score=149.13 Aligned_cols=144 Identities=15% Similarity=0.178 Sum_probs=106.1
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEcccc-cccc-ccHH
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEP-LLFS-CSIR 979 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp-~LF~-gTIr 979 (1139)
.+++++++.+++| ++|+||+|||||||+++|.+...+ |.|.++|.++........++++++++|++ ..+. -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4899999999999 999999999999999999999876 79999999998777777888999999986 3332 3677
Q ss_pred HHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccC-----
Q 048639 980 NNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSA----- 1054 (1139)
Q Consensus 980 eNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~----- 1054 (1139)
||++...+...+.+. + ........ . -..|||||+||..+++|+..+|++| |||..-
T Consensus 110 Deid~~~~~r~~~~~-~-----~~~~~~~~-------~----l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRET-G-----ASVRVVNQ-------L----LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC---------------CTTHHHH-------H----HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcc-h-----HHHHHHHH-------H----HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 888865332211110 0 01111111 1 1358999999999999999999985 999852
Q ss_pred -------CCHHHHHHHHHHHH
Q 048639 1055 -------LDAESERVIVSALE 1068 (1139)
Q Consensus 1055 -------LD~~te~~I~~~l~ 1068 (1139)
-|.+.+..|.+.+.
T Consensus 171 ~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHHT
T ss_pred eEEEeCCcCHHHHHHHHHHHH
Confidence 35666666766653
No 256
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.15 E-value=1.7e-13 Score=151.22 Aligned_cols=143 Identities=18% Similarity=0.224 Sum_probs=103.7
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCC-CCCc-ccHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEP-SLFT-GSLM 350 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~-~l~~-~ti~ 350 (1139)
.+++++++++++| ++|+||||||||||+++|+|++.+ |.|.++|.++........++.+++++|++ ..++ -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4889999999999 999999999999999999999887 79999999887665556677899999986 3443 3677
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC------
Q 048639 351 DNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS------ 424 (1139)
Q Consensus 351 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts------ 424 (1139)
|||....+.....+. . .....+.+....|||||+||+.+++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~~~~~-------------~----~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRET-------------G----ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC--------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcc-------------h----HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 888764322111000 0 0111223334579999999999999999999985 99874
Q ss_pred ------CCCHHhHHHHHHHH
Q 048639 425 ------ALDSESEKLVQEAL 438 (1139)
Q Consensus 425 ------~LD~~~~~~i~~~l 438 (1139)
.-|.+.+..|.+.+
T Consensus 171 ~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHH
Confidence 22555555555544
No 257
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.13 E-value=1.1e-11 Score=127.77 Aligned_cols=112 Identities=18% Similarity=0.168 Sum_probs=75.6
Q ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCC
Q 048639 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNM 358 (1139)
Q Consensus 279 s~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~ 358 (1139)
+|++++|+.++|+||+|||||||++++++.+.|.+|.. +.|+ +..+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~~~~------ 78 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DTKDL------ 78 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EHHHH------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EHHHH------
Confidence 56788999999999999999999999999987766631 1111 11111
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHhHHHHHHH
Q 048639 359 DADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS-ALDSESEKLVQEA 437 (1139)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts-~LD~~~~~~i~~~ 437 (1139)
.+.... .... + ... -+...+.+|++|+||||++ ++|+.....+.+.
T Consensus 79 -------~~~~~~-----~~~~---~----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 79 -------IFRLKH-----LMDE---G----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp -------HHHHHH-----HHHH---T----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred -------HHHHHH-----HhcC---c----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 111100 0110 0 000 0112245999999999996 8999998888888
Q ss_pred HHHHc-CCCeEEEEecCccc
Q 048639 438 LERAM-QGRTVILIAHRMST 456 (1139)
Q Consensus 438 l~~~~-~~~tvi~itH~~~~ 456 (1139)
+.... +++++|++||....
T Consensus 126 l~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHTTCEEEEECCCCSC
T ss_pred HHHHHHcCCCEEEEcCCChh
Confidence 87654 68999999998643
No 258
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.11 E-value=6.3e-12 Score=140.56 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=80.5
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEE---CCcccCCCChHHHh-hhceEEcccccc------ccccHH
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILI---DGKGIKEYNLRRLR-SQIGLVQQEPLL------FSCSIR 979 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~i---dG~di~~~~l~~lR-~~i~~V~Qdp~L------F~gTIr 979 (1139)
++.+|+.++|+|+||||||||+++|. +.+|.+|+|.+ +|.++.... ..++ +++++|+|+|-+ ..-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~-~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGV-RLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCE-EEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeE-EEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 44579999999999999999999999 99999999999 999887643 2223 379999999954 24578
Q ss_pred HHh--ccC---------C---C-cCCHHHHHHHHHHcCchH-HHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 980 NNI--CYG---------N---E-AASEAEIVEVSKKANIHD-FISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 980 eNL--~~~---------~---~-~~sd~ei~~al~~~~l~~-~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
+|+ .++ . + ......+.++++..++.+ ..++.| ..|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 332 1 1 112356889999999875 443322 358998888899987
No 259
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.10 E-value=1.1e-12 Score=147.55 Aligned_cols=140 Identities=16% Similarity=0.189 Sum_probs=97.3
Q ss_pred CccEEEEeEEEECCCCCCCccccceeEEe-------------------cCCCEEEEECCCCCcHHHHHHHHHhccC--CC
Q 048639 254 DGNIDIRDVCFAYPSRPDQLILKGFSLSI-------------------PAGKMVALVGSSGCGKSTVISLVARFYD--PS 312 (1139)
Q Consensus 254 ~~~i~~~~v~~~y~~~~~~~~l~~is~~i-------------------~~g~~~~ivG~sGsGKSTll~~l~g~~~--~~ 312 (1139)
++.|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++|.|++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 35689999999993 5899999988 8999999999999999999999999998 99
Q ss_pred ccEEEE---CCccCCCCCHHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCcc
Q 048639 313 NGDILI---DSLNIKDLDLKSLRKNIGAVSQEPSLFT-GSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTE 388 (1139)
Q Consensus 313 ~G~i~~---~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 388 (1139)
+|+|.+ ||.... . ..++.++++ |+..++. .++.+|+.+. ..+..|.. .
T Consensus 110 ~G~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~----------------------~~l~~~~~-~ 161 (308)
T 1sq5_A 110 HRRVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKFV----------------------SDLKSGVP-N 161 (308)
T ss_dssp CCCEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHHH----------------------HHHTTTCS-C
T ss_pred CCeEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHHH----------------------HHHhCCCC-c
Confidence 999999 887642 2 345678888 7765543 3677766432 11111111 0
Q ss_pred ccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH
Q 048639 389 LGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDS 428 (1139)
Q Consensus 389 i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~ 428 (1139)
+.....+.+.+ +|+..+.+...+++++|+|.|....|.
T Consensus 162 i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 162 VTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp EEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred eeccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 11111122222 333333355678999999999988774
No 260
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.08 E-value=7.9e-12 Score=139.78 Aligned_cols=115 Identities=11% Similarity=0.054 Sum_probs=75.2
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEE---CCccCCCCCHHHHh-cceEEEecCCCCC------cccH
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI---DSLNIKDLDLKSLR-KNIGAVSQEPSLF------TGSL 349 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~~-~~i~~v~Q~~~l~------~~ti 349 (1139)
+++.+|++++++||||||||||+++|+ +.+|++|+|.+ +|+++..... ..+ +.+||++|+|.+. ..|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 355679999999999999999999999 99999999999 9988765432 222 3699999999653 3478
Q ss_pred HHHH--hcCC------------C-CCCHHHHHHHHHHhcHHHHHHhCCCCCCc-cccccCCCCChHHHHHHHHHH
Q 048639 350 MDNI--KVGN------------M-DADDEQIYNASMMANAHSFISQLPDQYST-ELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 350 ~~ni--~~g~------------~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~i~~~g~~LSgGqkqRi~lAR 408 (1139)
||+ .|+. + ......+ .+.++.+ |+.. ........|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v---------~~~l~~~--~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAV---------KEAVKNG--EISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHH---------HHHHHTT--SSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHH---------HHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888 4431 0 0011122 2334433 3332 334456689999999999997
No 261
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.06 E-value=6.2e-11 Score=137.26 Aligned_cols=135 Identities=21% Similarity=0.219 Sum_probs=85.9
Q ss_pred ccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhc
Q 048639 904 LNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNIC 983 (1139)
Q Consensus 904 L~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~ 983 (1139)
-++++|+++.|+.|+|||++|||||||+++|.+..+ .+.+.+..++ ...+++|+|++. ..-++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999843 4555555443 345777877651 1112333221
Q ss_pred cCC-----CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHH
Q 048639 984 YGN-----EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAE 1058 (1139)
Q Consensus 984 ~~~-----~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~ 1058 (1139)
+.. ...... ..+..+++.. .+.-+ |.. .+.-.+||+||+||.++||+|..+|.||++ +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~era~~--lL~vv----Dls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIARTRV--LLYVL----DAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSSSE--EEEEE----ETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHHHHHHh--hhEEe----CCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 110 001111 1122222221 11111 110 122246999999999999999999999999 999997
Q ss_pred HHHH
Q 048639 1059 SERV 1062 (1139)
Q Consensus 1059 te~~ 1062 (1139)
....
T Consensus 283 ~~~~ 286 (416)
T 1udx_A 283 EEEA 286 (416)
T ss_dssp CHHH
T ss_pred hHHH
Confidence 7633
No 262
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.05 E-value=4.1e-13 Score=144.64 Aligned_cols=147 Identities=16% Similarity=0.160 Sum_probs=63.1
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHh-ccc------------cCCccEEEECCcccCCCChHHHhhhceEEc
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLL-RFY------------DPNEGIILIDGKGIKEYNLRRLRSQIGLVQ 968 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~-rl~------------~p~~G~I~idG~di~~~~l~~lR~~i~~V~ 968 (1139)
...+++||++++|+.+||+||||||||||+++|. +++ +|..|++ +|++....+...++.. +.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hh
Confidence 3578999999999999999999999999999999 998 5555544 4544443343333321 22
Q ss_pred cccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH-HHHH-HhcCCCCEE
Q 048639 969 QEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI-AIAR-TLLKRPAIM 1046 (1139)
Q Consensus 969 Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl-alAR-ALlr~p~IL 1046 (1139)
++.+++.+++..|+ ++.+ .+++.++++.... .+... .+. -...-++++ .-++ .++..|+..
T Consensus 90 ~~~~~~~~~~~~~~-~~~~---~~~i~~~~~~~~~--vild~------~~~-----g~~~~~~~~~~~~~~v~v~~~~~~ 152 (231)
T 3lnc_A 90 NGEIIEHAEVFGNF-YGVP---RKNLEDNVDKGVS--TLLVI------DWQ-----GAFKFMEMMREHVVSIFIMPPSME 152 (231)
T ss_dssp TTCEEEEEEETTEE-EEEE---CTTHHHHHHHTCE--EEEEC------CHH-----HHHHHHHHSGGGEEEEEEECSCHH
T ss_pred cCceehhhhhcccc-CCCC---HHHHHHHHHcCCe--EEEEc------CHH-----HHHHHHHhcCCCeEEEEEECCcHH
Confidence 33334344444444 2222 2334444444221 11100 000 001123433 2222 346788888
Q ss_pred EeeccccCCCHHHHHHHHHHHHhh
Q 048639 1047 LLDEATSALDAESERVIVSALEAL 1070 (1139)
Q Consensus 1047 lLDEaTS~LD~~te~~I~~~l~~~ 1070 (1139)
++||..++.|..+++.+++.|++.
T Consensus 153 ~l~~Rl~~R~~~~~~~i~~rl~~~ 176 (231)
T 3lnc_A 153 ELRRRLCGRRADDSEVVEARLKGA 176 (231)
T ss_dssp HHHHC--------------CHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHH
Confidence 999999999999998888777643
No 263
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.02 E-value=2e-10 Score=118.34 Aligned_cols=113 Identities=15% Similarity=0.175 Sum_probs=73.9
Q ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCC
Q 048639 908 SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNE 987 (1139)
Q Consensus 908 sl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~ 987 (1139)
||.+++|+.++|+||+|+|||||++++.+.+.|.+|...+ ++ +.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~------------------~~---------~~--------- 75 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGY------------------FF---------DT--------- 75 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCC------------------EE---------EH---------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEE------------------EE---------EH---------
Confidence 5678899999999999999999999999998766663110 10 11
Q ss_pred cCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeecccc-CCCHHHHHHHHHH
Q 048639 988 AASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS-ALDAESERVIVSA 1066 (1139)
Q Consensus 988 ~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS-~LD~~te~~I~~~ 1066 (1139)
.++.+.+... ... +. .. -....+.+|++|+||||++ ++|+.....+.+.
T Consensus 76 ----~~~~~~~~~~-----~~~-----------~~--~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 76 ----KDLIFRLKHL-----MDE-----------GK--DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp ----HHHHHHHHHH-----HHH-----------TC--CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred ----HHHHHHHHHH-----hcC-----------ch--HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 1111111110 000 00 00 0112245999999999996 8999999999998
Q ss_pred HHhhCCCCCCccccCCCeEEEEEecCchh
Q 048639 1067 LEALNPKSSSCGELASRTTQITVAHRLAT 1095 (1139)
Q Consensus 1067 l~~~~~~~~~~~~~~~~tTvI~IaHrl~t 1095 (1139)
+++.. .+++++|++||+...
T Consensus 126 l~~~~---------~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 126 ITYRY---------NNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHH---------HTTCEEEEECCCCSC
T ss_pred HHHHH---------HcCCCEEEEcCCChh
Confidence 87653 233458999997753
No 264
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.01 E-value=6.7e-11 Score=137.00 Aligned_cols=154 Identities=19% Similarity=0.207 Sum_probs=92.7
Q ss_pred ccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHh
Q 048639 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIK 354 (1139)
Q Consensus 275 l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~ 354 (1139)
-++++|+++.|+.++|+|+||||||||++.|+|..+ .+.+.+...+ ...+++|+|+.. ..-++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999843 3444443322 235677776541 1112222221
Q ss_pred cCC-----CCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 048639 355 VGN-----MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE 429 (1139)
Q Consensus 355 ~g~-----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~ 429 (1139)
+.. ...... ..... ..++..+..+ +.. .+...+||+||+||+++||+|..+|.|+++ +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~--era~~lL~vv----Dls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHI--ARTRVLLYVL----DAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHH--TSSSEEEEEE----ETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHH--HHHHhhhEEe----CCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 110 001111 11100 0000011111 100 234457999999999999999999999999 999997
Q ss_pred hHHHHHHHHHHHc-CCCeEEEEec
Q 048639 430 SEKLVQEALERAM-QGRTVILIAH 452 (1139)
Q Consensus 430 ~~~~i~~~l~~~~-~~~tvi~itH 452 (1139)
....+.+....+. .+.+++.+|.
T Consensus 283 ~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEC
Confidence 6633333333332 3667777764
No 265
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.98 E-value=7.3e-13 Score=142.69 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=22.9
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHH-hccC
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA-RFYD 310 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~-g~~~ 310 (1139)
...+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3678999999999999999999999999999999 9984
No 266
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.97 E-value=1.6e-11 Score=131.73 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=100.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccc---cCCccEEEE--------CCcccC-CCChHHHhhhceEEcccc------cccc
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFY---DPNEGIILI--------DGKGIK-EYNLRRLRSQIGLVQQEP------LLFS 975 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~---~p~~G~I~i--------dG~di~-~~~l~~lR~~i~~V~Qdp------~LF~ 975 (1139)
+.+|+|+|++||||||++++|.+.+ .++.|.|.. +|.++. .....++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999877 678899887 788776 356678999999999987 4556
Q ss_pred ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCcccccc-CCCCCCChHHHHHHHHHHHhcCCCCEEEeecccc
Q 048639 976 CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVG-EKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS 1053 (1139)
Q Consensus 976 gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~-e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS 1053 (1139)
.++.+++. ++++.+++..+..++.+.....+..+.+. ++|.-++|+ .++++++++++++|+.+++.
T Consensus 85 ~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 85 EDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp EECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred eeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 67777753 46888899999999988776555554442 456667776 46677889999999988754
No 267
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.96 E-value=2.9e-11 Score=135.79 Aligned_cols=140 Identities=14% Similarity=0.183 Sum_probs=96.5
Q ss_pred cccEEEEeEEEECCCCCCcccccceeEEE-------------------eCCcEEEEEcCCCCCHHHHHHHHhcccc--CC
Q 048639 883 KGRIEFQNIKFNYPSRPEVTVLNNFSLQI-------------------EPGLKVALVGPSGAGKSSVLALLLRFYD--PN 941 (1139)
Q Consensus 883 ~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I-------------------~~Ge~vaIvG~sGSGKSTL~~lL~rl~~--p~ 941 (1139)
.+.|+++||++.|. ++++++|+.+ ++|+++||+|+||||||||+++|.+++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 45799999999992 5899999998 8999999999999999999999999998 99
Q ss_pred ccEEEE---CCcccCCCChHHHhhhceEEccccccc-cccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCcccc
Q 048639 942 EGIILI---DGKGIKEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTV 1017 (1139)
Q Consensus 942 ~G~I~i---dG~di~~~~l~~lR~~i~~V~Qdp~LF-~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~ 1017 (1139)
+|+|.+ ||.+.. ...++.++++ |+..++ .-|+.+|+.+.. . + ..-.+.+ ..| -++
T Consensus 110 ~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~------~----l--~~~~~~i-~~P-~~~-- 168 (308)
T 1sq5_A 110 HRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVS------D----L--KSGVPNV-TAP-VYS-- 168 (308)
T ss_dssp CCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHH------H----H--TTTCSCE-EEC-CEE--
T ss_pred CCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHH------H----H--hCCCCce-ecc-ccc--
Confidence 999999 998753 2456778999 765543 336666654310 0 0 0000000 012 111
Q ss_pred ccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCH
Q 048639 1018 VGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDA 1057 (1139)
Q Consensus 1018 v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~ 1057 (1139)
.+.+ +|+..+.+.+.+++++|+|.|....|.
T Consensus 169 -------~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 169 -------HLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp -------TTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred -------cccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 2222 233333356678999999999887663
No 268
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.95 E-value=1.6e-10 Score=129.25 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=68.8
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEE---CCcccCCCChHHHhhhceEEccccc-------------
Q 048639 909 LQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILI---DGKGIKEYNLRRLRSQIGLVQQEPL------------- 972 (1139)
Q Consensus 909 l~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~i---dG~di~~~~l~~lR~~i~~V~Qdp~------------- 972 (1139)
|++.+|+.++|+||||||||||+++|.|+..|++|+|.+ +|.++.........+++++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456679999999999999999999999999999999999 9999876542111246999999985
Q ss_pred ---cc-cccHHHHhccCCC---cCCHHHHHHHHHHcCch-HHHhhCC
Q 048639 973 ---LF-SCSIRNNICYGNE---AASEAEIVEVSKKANIH-DFISSLP 1011 (1139)
Q Consensus 973 ---LF-~gTIreNL~~~~~---~~sd~ei~~al~~~~l~-~~i~~lp 1011 (1139)
+| .-|+ +|+.++.- ...+..+.++++.++|. +..++.|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 34 3477 88887421 12345789999999994 5555544
No 269
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.93 E-value=1.7e-10 Score=128.93 Aligned_cols=94 Identities=15% Similarity=0.118 Sum_probs=60.3
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEE---CCccCCCCCHHHHhcceEEEecCCC-------------
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI---DSLNIKDLDLKSLRKNIGAVSQEPS------------- 343 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~~~~i~~v~Q~~~------------- 343 (1139)
|++.+|++++|+||||||||||+++|+|+..|++|+|.+ +|+++.........+.++||+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 567789999999999999999999999999999999999 8988765432111236999999985
Q ss_pred ---CCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcH
Q 048639 344 ---LFTG-SLMDNIKVGNM---DADDEQIYNASMMANA 374 (1139)
Q Consensus 344 ---l~~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~ 374 (1139)
+|+. |+ +|+.|+.. .....++.++++..++
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L 280 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEI 280 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSS
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCC
Confidence 3543 78 99988531 1123345555555544
No 270
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.92 E-value=1.3e-10 Score=126.67 Aligned_cols=98 Identities=18% Similarity=0.203 Sum_probs=75.3
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHh---ccccCCccEEE--------ECCccc-CCCChHHHhhhceEEcc
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLL---RFYDPNEGIIL--------IDGKGI-KEYNLRRLRSQIGLVQQ 969 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~---rl~~p~~G~I~--------idG~di-~~~~l~~lR~~i~~V~Q 969 (1139)
+++++.+ ++|++|+|+|++||||||++++|. |++.|++|.|. .+|.++ .......+++++++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3555544 789999999999999999999999 99999999999 999998 45678899999999996
Q ss_pred c------cccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhh
Q 048639 970 E------PLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISS 1009 (1139)
Q Consensus 970 d------p~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~ 1009 (1139)
+ ..++..++.+|+. .+++..+...+..++.+..
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~-------~~~v~~~~s~~~~~~~vr~ 133 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR-------TETVGNTASQAAAFPRVRE 133 (252)
T ss_dssp EETTEEEEEETTEECTTGGG-------SHHHHHHHHHHTTSHHHHH
T ss_pred cCCCCceEEECCeehhHHHH-------HHHHHHHHHHhcccHHHHH
Confidence 5 4566778888874 2456666666666655544
No 271
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.92 E-value=5.8e-10 Score=124.09 Aligned_cols=98 Identities=14% Similarity=0.306 Sum_probs=73.8
Q ss_pred eeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCC
Q 048639 907 FSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGN 986 (1139)
Q Consensus 907 vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~ 986 (1139)
+++..++|+.++|+|++||||||++..|.+.+.+..|+|.+.+.|+... + ..
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------~------------a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------A------------AI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------H------------HH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------H------------HH-------
Confidence 4556778999999999999999999999999999889999887765320 0 01
Q ss_pred CcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH---HHHHHhcCCCCEEEeecccc
Q 048639 987 EAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI---AIARTLLKRPAIMLLDEATS 1053 (1139)
Q Consensus 987 ~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl---alARALlr~p~ILlLDEaTS 1053 (1139)
+++...++..++. . + ...|+|+.|++ +++||+.++|+++|+|||..
T Consensus 149 -----eqL~~~~~~~gl~-----------~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 -----EQLKIWGERVGAT-----------V-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -----HHHHHHHHHHTCE-----------E-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -----HHHHHHHHHcCCc-----------E-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 2233333443331 1 1 13578999999 99999999999999999974
No 272
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.89 E-value=6.5e-10 Score=130.22 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=56.5
Q ss_pred EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh
Q 048639 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL 957 (1139)
Q Consensus 887 ~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l 957 (1139)
.+.++++.+ .++|+++||+|++ |.+||+||||||||||+++|.|+++|++|+|.++|.++...+.
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 456666533 2479999999999 9999999999999999999999999999999999999876543
No 273
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.89 E-value=1.8e-09 Score=120.11 Aligned_cols=132 Identities=18% Similarity=0.148 Sum_probs=94.2
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
+.++++++.|+.. + ++++|+ +|+.++++|++|+||||++..|.+.+.+..|+|.+.+.|+..-...+
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~------ 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------ 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH------
Confidence 5667788888532 1 678888 89999999999999999999999999999999999888765311110
Q ss_pred EEccccccccccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 048639 966 LVQQEPLLFSCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAI 1045 (1139)
Q Consensus 966 ~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~I 1045 (1139)
++....+..++.- +|.+ ..-...+.||.+++++...++++
T Consensus 144 ---------------------------ql~~~~~~~~l~~----~~~~---------~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 144 ---------------------------QLRLLGEKVGVPV----LEVM---------DGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp ---------------------------HHHHHHHHHTCCE----EECC---------TTCCHHHHHHHHHHHHHHHTCCE
T ss_pred ---------------------------HHHHhcccCCeEE----EEcC---------CCCCHHHHHHHHHHHHHhCCCCE
Confidence 0001112222211 1111 11234456788999998899999
Q ss_pred EEeecc-ccCCCHHHHHHHHHHHHhh
Q 048639 1046 MLLDEA-TSALDAESERVIVSALEAL 1070 (1139)
Q Consensus 1046 LlLDEa-TS~LD~~te~~I~~~l~~~ 1070 (1139)
+|+||| |+++|...-..+.+..+..
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhc
Confidence 999999 9999998888887777654
No 274
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.88 E-value=1e-11 Score=142.40 Aligned_cols=171 Identities=15% Similarity=0.148 Sum_probs=110.5
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhc------------cccCCccEEEECCcccCCCCh-HHHhhhc---eEEcccccc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLR------------FYDPNEGIILIDGKGIKEYNL-RRLRSQI---GLVQQEPLL 973 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~r------------l~~p~~G~I~idG~di~~~~l-~~lR~~i---~~V~Qdp~L 973 (1139)
.+++|+++||||++|+|||||+++|.| ..+|..|.+.++|..+..+.- ..-++.+ ..+.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999 678999999998854321100 0001112 355666665
Q ss_pred ccc-cHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC--CEEEeec
Q 048639 974 FSC-SIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRP--AIMLLDE 1050 (1139)
Q Consensus 974 F~g-TIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p--~ILlLDE 1050 (1139)
..+ |..+++ . .+....++.+..--++-..-+ |. ....+||+. +| +|+++||
T Consensus 96 ~~~~s~~e~L-------~-~~fl~~ir~~d~il~Vvd~~~--d~----~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGL-------G-NAFLSHVRAVDAIYQVVRAFD--DA----EIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSS-------C-HHHHHHHTTCSEEEEEEECCC--TT----CSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHH-------H-HHHHHHHHHHHHHHHHHhccc--cc----eeeeecccc------------Ccchhhhhchh
Confidence 543 222222 1 123333333321111111111 11 122345542 89 9999999
Q ss_pred cccCCCHHHHHHHHHHHHhh-CCCCCCccccCCCeEEEEEecCchhhhc-CCEEE-EEeCC-EEEEecChh
Q 048639 1051 ATSALDAESERVIVSALEAL-NPKSSSCGELASRTTQITVAHRLATVIN-SDVIV-VMDKG-EVVEMGSHS 1117 (1139)
Q Consensus 1051 aTS~LD~~te~~I~~~l~~~-~~~~~~~~~~~~~tTvI~IaHrl~ti~~-~DrI~-vl~~G-~ive~G~~~ 1117 (1139)
+++..|.+..+..++.+++. . .+++|+ ++|.+..+.. ||+|. +|++| +++..|++.
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~---------~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITS---------RGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC---------CSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHH---------hcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 99999999999999988876 3 334434 3999998876 99999 99999 887666543
No 275
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.88 E-value=5.8e-10 Score=130.60 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=50.8
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD 327 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~ 327 (1139)
.+|+|+||++++ ++++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 389999999999 999999999999999999999999999999999999887544
No 276
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.83 E-value=3.1e-09 Score=118.01 Aligned_cols=138 Identities=16% Similarity=0.183 Sum_probs=89.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCH
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADD 362 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~ 362 (1139)
++|++++++|++||||||++..|++.+.+++| +++.++.+|++ ..+..|++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHHH-------
Confidence 47899999999999999999999999988777 25677777763 2233333221
Q ss_pred HHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc
Q 048639 363 EQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAM 442 (1139)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 442 (1139)
.+. ...+|. ... ..++..+.+|+++ .+|+++|+| |+++|+.....+.+..+-..
T Consensus 156 -----~~~-------~~gl~~----~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 156 -----YAE-------LLQAPL----EVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp -----HHT-------TTTCCC----CBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred -----HHH-------hcCCCe----Eec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 010 011221 111 1234567788865 999999999 99999877665555443332
Q ss_pred ---CCCeEEEE--ecCccchhc-cCEEEEEeCcEEEE
Q 048639 443 ---QGRTVILI--AHRMSTIVN-ADMIAVVEDGQVTE 473 (1139)
Q Consensus 443 ---~~~tvi~i--tH~~~~~~~-~d~i~~l~~G~i~~ 473 (1139)
...+++++ +|..+.+.. ++++..++.+.++.
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 22345555 898777765 77666666677765
No 277
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.83 E-value=7e-09 Score=115.28 Aligned_cols=132 Identities=16% Similarity=0.083 Sum_probs=90.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
+.++++++.|+.. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|...-...
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR------- 142 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-------
Confidence 4455666777421 1 678888 9999999999999999999999999999999999877665321000
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCE
Q 048639 337 AVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPI 416 (1139)
Q Consensus 337 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~i 416 (1139)
+ ++.... + ...+ +-... +..-...+-+|.+|+++...++++
T Consensus 143 --------------~------------ql~~~~------~-~~~l----~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 143 --------------E------------QLRLLG------E-KVGV----PVLEV--MDGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp --------------H------------HHHHHH------H-HHTC----CEEEC--CTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred --------------H------------HHHHhc------c-cCCe----EEEEc--CCCCCHHHHHHHHHHHHHhCCCCE
Confidence 0 000000 0 0111 11110 112234456799999998899999
Q ss_pred EEEeCC-CCCCCHHhHHHHHHHHHHH
Q 048639 417 LLLDEA-TSALDSESEKLVQEALERA 441 (1139)
Q Consensus 417 lllDEp-ts~LD~~~~~~i~~~l~~~ 441 (1139)
+|+|+| ++++|......+.+.....
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhc
Confidence 999999 9999988777776666554
No 278
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.82 E-value=2.5e-10 Score=126.61 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=56.9
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEE---CCcccCCCChHHHhhhceEEcccccccc-----ccHHHH
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILI---DGKGIKEYNLRRLRSQIGLVQQEPLLFS-----CSIRNN 981 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~i---dG~di~~~~l~~lR~~i~~V~Qdp~LF~-----gTIreN 981 (1139)
++.+|++++|+|+||+|||||+++|.|+..|..|+|.+ +|.++.... +.++..+++|+|.|-++. -|+ +|
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-HH
Confidence 45689999999999999999999999999999999999 888876532 222333899999997654 467 88
Q ss_pred hccCCC-----------------cCCHHHHHHHHHHcCchHH
Q 048639 982 ICYGNE-----------------AASEAEIVEVSKKANIHDF 1006 (1139)
Q Consensus 982 L~~~~~-----------------~~sd~ei~~al~~~~l~~~ 1006 (1139)
|....+ ...+..+.++++..++.+.
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 831111 1123468888888888653
No 279
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.81 E-value=1.8e-09 Score=120.20 Aligned_cols=111 Identities=15% Similarity=0.305 Sum_probs=76.3
Q ss_pred eeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCC
Q 048639 278 FSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGN 357 (1139)
Q Consensus 278 is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~ 357 (1139)
++++.++|++++|+|++||||||++..|++.+.+..|+|.+.+.|... ....++
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r---------------------~~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---------------------AAAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---------------------HHHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc---------------------HHHHHH-----
Confidence 345567899999999999999999999999999988888886654321 001111
Q ss_pred CCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHH---HHHHHHccCCCEEEEeCCCCCCCHHhHHHH
Q 048639 358 MDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRI---AIARAIVKNPPILLLDEATSALDSESEKLV 434 (1139)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi---~lARal~~~~~illlDEpts~LD~~~~~~i 434 (1139)
+.. +.+.+ |++. ...+|||+.|++ +|+||+..+|+++|+|+|.. .+....+
T Consensus 151 -------L~~---------~~~~~--gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l 204 (306)
T 1vma_A 151 -------LKI---------WGERV--GATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNL 204 (306)
T ss_dssp -------HHH---------HHHHH--TCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHH
T ss_pred -------HHH---------HHHHc--CCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHH
Confidence 111 11111 1111 124689999999 99999999999999999974 3444444
Q ss_pred HHHHHH
Q 048639 435 QEALER 440 (1139)
Q Consensus 435 ~~~l~~ 440 (1139)
++.+.+
T Consensus 205 ~~eL~~ 210 (306)
T 1vma_A 205 MEELRK 210 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 280
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.80 E-value=4.6e-09 Score=116.60 Aligned_cols=141 Identities=13% Similarity=0.129 Sum_probs=90.9
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCH
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASE 991 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd 991 (1139)
++|+.++++|++||||||++..|.+.+.+.+| +++.++.+|++ ..+..++
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eq---------- 152 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQ---------- 152 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHH----------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHH----------
Confidence 47999999999999999999999999988778 24666777763 2222222
Q ss_pred HHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhC
Q 048639 992 AEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALN 1071 (1139)
Q Consensus 992 ~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~ 1071 (1139)
+....+..++ | -... .+ ++..+.+++++ ++++++|+| |+++|+..+..+.+..+-..
T Consensus 153 --L~~~~~~~gl-------~----~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 153 --LKTYAELLQA-------P----LEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp --HHHHHTTTTC-------C----CCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred --HHHHHHhcCC-------C----eEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 2222222222 1 1111 12 34456777764 899999999 99999987776665443221
Q ss_pred CCCCCccccCCCeEEEEE--ecCchhhhc-CCEEEEEeCCEEEE
Q 048639 1072 PKSSSCGELASRTTQITV--AHRLATVIN-SDVIVVMDKGEVVE 1112 (1139)
Q Consensus 1072 ~~~~~~~~~~~~tTvI~I--aHrl~ti~~-~DrI~vl~~G~ive 1112 (1139)
+ .....+++++ +|..+.+.. +|++..++.|.++-
T Consensus 210 ~-------~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 F-------ESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp C-------CTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred h-------cCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 0 0122235555 898777765 77666666677765
No 281
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.79 E-value=6.7e-12 Score=143.89 Aligned_cols=170 Identities=14% Similarity=0.154 Sum_probs=109.5
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHh------------ccCCCccEEEECCccCCCCCH-HHHhcce---EEEecCCCC
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVAR------------FYDPSNGDILIDSLNIKDLDL-KSLRKNI---GAVSQEPSL 344 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g------------~~~~~~G~i~~~g~~~~~~~~-~~~~~~i---~~v~Q~~~l 344 (1139)
.+++|..++|+|++|+|||||+++|+| ..+|+.|.+.++|..+..+.. ..-++.+ .++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 567999999998853311100 0001222 467777776
Q ss_pred Ccc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCC--CEEEEeC
Q 048639 345 FTG-SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNP--PILLLDE 421 (1139)
Q Consensus 345 ~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~--~illlDE 421 (1139)
..+ |..|++. .........+. .+..+-+..+ ......+||+. +| +++++||
T Consensus 96 ~~~~s~~e~L~--------~~fl~~ir~~d---~il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGLG--------NAFLSHVRAVD---AIYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSSC--------HHHHHHHTTCS---EEEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHHH--------HHHHHHHHHHH---HHHHHHhccc---cceeeeecccc------------Ccchhhhhchh
Confidence 643 3333321 11111111110 0000000000 12333456553 89 9999999
Q ss_pred CCCCCCHHhHHHHHHHHHHH-cC-CCeEEEEecCccchhc-cCEEE-EEeCc-EEEEecChh
Q 048639 422 ATSALDSESEKLVQEALERA-MQ-GRTVILIAHRMSTIVN-ADMIA-VVEDG-QVTETGTHH 478 (1139)
Q Consensus 422 pts~LD~~~~~~i~~~l~~~-~~-~~tvi~itH~~~~~~~-~d~i~-~l~~G-~i~~~g~~~ 478 (1139)
|++.+|+...+...+.+... .+ |.|+ ++|.+..+.. ||++. +|++| +++..|+.+
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 99999999988888888776 44 5664 3999988876 99999 99999 887666543
No 282
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.78 E-value=2.1e-11 Score=135.19 Aligned_cols=132 Identities=19% Similarity=0.256 Sum_probs=91.5
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEE
Q 048639 258 DIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGA 337 (1139)
Q Consensus 258 ~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 337 (1139)
+++++.+.|. ...+++++++++++| ++|+||+|||||||+++|++... .|.|.+++.++........++.+++
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 3455555553 235899999999999 99999999999999999999985 7999999887654433344566888
Q ss_pred EecCCC-CCc-ccHHHHHh-cCCCCCC-----HHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHH
Q 048639 338 VSQEPS-LFT-GSLMDNIK-VGNMDAD-----DEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARA 409 (1139)
Q Consensus 338 v~Q~~~-l~~-~ti~~ni~-~g~~~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARa 409 (1139)
++|++. .++ -++.||+. ++..... .++.. +.+..+. ..|||||+||+.+|+|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~---------~~~~~ll-----------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDERE---------QTLNQLL-----------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHH---------HHHHHHH-----------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHH---------HHHHHHH-----------HHHhCCCCCCCEEEEE
Confidence 888764 333 36778873 3321110 01111 1111111 2589999999999999
Q ss_pred HccCCCE
Q 048639 410 IVKNPPI 416 (1139)
Q Consensus 410 l~~~~~i 416 (1139)
+..+|++
T Consensus 184 ~t~~p~~ 190 (278)
T 1iy2_A 184 ATNRPDI 190 (278)
T ss_dssp EESCTTS
T ss_pred ecCCchh
Confidence 9999976
No 283
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.77 E-value=1e-09 Score=115.36 Aligned_cols=72 Identities=11% Similarity=0.163 Sum_probs=55.2
Q ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcc-cHHHHHh
Q 048639 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTG-SLMDNIK 354 (1139)
Q Consensus 279 s~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-ti~~ni~ 354 (1139)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|++|++.+|.. ++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57788999999999999999999999999974 588888777655444456789999999987754 5556554
No 284
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.76 E-value=5.3e-10 Score=123.93 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=44.8
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEE---CCccCCCCCHHHHhcceEEEecCCCCCc-----ccHHH
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI---DSLNIKDLDLKSLRKNIGAVSQEPSLFT-----GSLMD 351 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~---~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-----~ti~~ 351 (1139)
+++.+|++++|+||||||||||+++|+|+..|..|+|.+ +|+++.... ...+..++|++|.|.+.. .|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567799999999999999999999999999999999999 887765432 122223899999997654 478 8
Q ss_pred HHh
Q 048639 352 NIK 354 (1139)
Q Consensus 352 ni~ 354 (1139)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 984
No 285
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.76 E-value=3e-09 Score=115.26 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=88.6
Q ss_pred ccccce-eEEecCCCEEEEECCCCCcHHHHHHHH-HhccCCCccEEEECCccCCCCCHHHH---hcceEEEecCCCCCcc
Q 048639 273 LILKGF-SLSIPAGKMVALVGSSGCGKSTVISLV-ARFYDPSNGDILIDSLNIKDLDLKSL---RKNIGAVSQEPSLFTG 347 (1139)
Q Consensus 273 ~~l~~i-s~~i~~g~~~~ivG~sGsGKSTll~~l-~g~~~~~~G~i~~~g~~~~~~~~~~~---~~~i~~v~Q~~~l~~~ 347 (1139)
+.|+++ .--+++|++++|.||+|||||||+..+ .+..+...+.+++++.. +...+ ...+++.+|+...
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~--- 82 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE--- 82 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH---
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh---
Confidence 467776 667999999999999999999996554 44544444455555432 22222 2234554443210
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc--cCCCEEEEeCCCCC
Q 048639 348 SLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV--KNPPILLLDEATSA 425 (1139)
Q Consensus 348 ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~--~~~~illlDEpts~ 425 (1139)
.+|+.+..... . .+..++. ....+.+. +....+....++.++ .+|+++++|++++.
T Consensus 83 --~~~l~~~~~~~--~-------------~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 83 --KGMFAMVDAFT--A-------------GIGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp --HTSEEEEECST--T-------------TTCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred --CCcEEEEecch--h-------------hcccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 00111100000 0 0000000 00001111 112333333344443 47999999999998
Q ss_pred C--CHHhHHHHHHHHHHH--cCCCeEEEEecCccc--------hh-ccCEEEEEeC
Q 048639 426 L--DSESEKLVQEALERA--MQGRTVILIAHRMST--------IV-NADMIAVVED 468 (1139)
Q Consensus 426 L--D~~~~~~i~~~l~~~--~~~~tvi~itH~~~~--------~~-~~d~i~~l~~ 468 (1139)
+ |+.....+...+.+. ..+.|+|+++|.... +. .||.|+.|+.
T Consensus 141 ~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 141 YINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 8 554444444444433 248899999997654 33 4899999974
No 286
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.75 E-value=3.7e-10 Score=117.57 Aligned_cols=142 Identities=22% Similarity=0.218 Sum_probs=78.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccC-----------CccEEEECCcccCC--CChHHHhhhceEEcccccccc--ccHHH
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDP-----------NEGIILIDGKGIKE--YNLRRLRSQIGLVQQEPLLFS--CSIRN 980 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p-----------~~G~I~idG~di~~--~~l~~lR~~i~~V~Qdp~LF~--gTIre 980 (1139)
+++|+|++|||||||++.+.+...+ ..|+|.+||.++.- ++....++..++++|...-.. -++.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7999999999999999999998755 57999999976532 222222333444444221000 01222
Q ss_pred HhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHH
Q 048639 981 NICYGNEAASEAEIVEVSKKANIHDFISSLPDGYD-TVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAES 1059 (1139)
Q Consensus 981 NL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gld-t~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~t 1059 (1139)
+.+. .+.+++...++.. .+. .+.+.- -.++.. ..|..-..+...+||++.++|+++++| ||++|.+.
T Consensus 111 ~~~~----~s~~~~~~~~~~~--~~~---~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~ 178 (191)
T 1oix_A 111 IAKH----LTYENVERWLKEL--RDH---ADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTN 178 (191)
T ss_dssp TTCH----HHHHTHHHHHHHH--HHH---SCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTT
T ss_pred CcCH----HHHHHHHHHHHHH--HHh---cCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCC
Confidence 2111 0111111111110 000 000000 001111 012111123467899999999999999 99999999
Q ss_pred HHHHHHHHHh
Q 048639 1060 ERVIVSALEA 1069 (1139)
Q Consensus 1060 e~~I~~~l~~ 1069 (1139)
...+.+.|.+
T Consensus 179 v~~l~~~l~~ 188 (191)
T 1oix_A 179 VEAAFQTILT 188 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988864
No 287
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.75 E-value=1.4e-09 Score=112.65 Aligned_cols=128 Identities=21% Similarity=0.392 Sum_probs=65.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhcccc-------------CCccEEEECCcccCCCChHHHhhhceEEccccccccccHHH
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFYD-------------PNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRN 980 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIre 980 (1139)
|+.++|+||||||||||+++|.++++ |..|++ +|+++...+.+.++..+ .|+.+++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 788885 89888877777766653 3666777777766
Q ss_pred HhccCCCcCCHHHHHHHHHHcC---c------hHHHhh--------------CCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 981 NICYGNEAASEAEIVEVSKKAN---I------HDFISS--------------LPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 981 NL~~~~~~~sd~ei~~al~~~~---l------~~~i~~--------------lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
|+ ++.+ .+++.++++... + ...+.. -++-+..++.+.|..-....+||++-|+
T Consensus 76 ~~-yg~~---~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~~ 151 (186)
T 3a00_A 76 NY-YGST---VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQ 151 (186)
T ss_dssp EE-EEEE---HHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC--------------------------
T ss_pred ee-ccCc---HHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 65 4432 344444444311 0 000111 1246667777777776677888999998
Q ss_pred Hhc-----CCCCEEEeec
Q 048639 1038 TLL-----KRPAIMLLDE 1050 (1139)
Q Consensus 1038 ALl-----r~p~ILlLDE 1050 (1139)
.-+ +.++.+|..+
T Consensus 152 ~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 152 AELAYAETGAHDKVIVND 169 (186)
T ss_dssp -------CCCCSEEEECS
T ss_pred HHHHhhcccCCcEEEECc
Confidence 766 4566666554
No 288
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.74 E-value=1.3e-10 Score=124.44 Aligned_cols=127 Identities=16% Similarity=0.239 Sum_probs=88.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhcc---CCCccEEEE--------CCccCCC-CCHHHHhcceEEEecCC------CCCc
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFY---DPSNGDILI--------DSLNIKD-LDLKSLRKNIGAVSQEP------SLFT 346 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~---~~~~G~i~~--------~g~~~~~-~~~~~~~~~i~~v~Q~~------~l~~ 346 (1139)
+.+++|+||+||||||++++|.+.+ .++.|.+.. +|.++.+ ....++++++++++|++ .+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999999887 788899887 6776653 34567888999999986 3344
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccc-cccCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 048639 347 GSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTEL-GQRGVQLSGGQKQRIAIARAIVKNPPILLLDEAT 423 (1139)
Q Consensus 347 ~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i-~~~g~~LSgGqkqRi~lARal~~~~~illlDEpt 423 (1139)
.++.+++. .+++..++..+..++.+.....+..+.+ .++|.-++|+ .++++++.+++++++.++.
T Consensus 85 ~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 56667653 3455555555555555544333322222 2456667776 4666788899999998864
No 289
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.74 E-value=2.6e-11 Score=132.46 Aligned_cols=138 Identities=20% Similarity=0.259 Sum_probs=93.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceE
Q 048639 257 IDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIG 336 (1139)
Q Consensus 257 i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 336 (1139)
.+++++.+.|. ...+++++++++++| ++|+||+|||||||+++|++... .|.+.++|.++........++.++
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 34556666563 235899999999999 99999999999999999999985 799999987764433334456678
Q ss_pred EEecCCC-CCc-ccHHHHH-hcCCCCCC-----HHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 337 AVSQEPS-LFT-GSLMDNI-KVGNMDAD-----DEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 337 ~v~Q~~~-l~~-~ti~~ni-~~g~~~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
+++|+.. ... -++.||+ .++..... .++.. +.+..+. ..|||||+||+.+++
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~---------~~~~~ll-----------~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDERE---------QTLNQLL-----------VEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHH---------HHHHHHH-----------HHHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHH---------HHHHHHH-----------HHHhCCCCCCCEEEE
Confidence 8888753 333 3667777 34321100 01111 1111111 257899999999999
Q ss_pred HHccCCCEEEEeCCC
Q 048639 409 AIVKNPPILLLDEAT 423 (1139)
Q Consensus 409 al~~~~~illlDEpt 423 (1139)
|+..+|++ +|++.
T Consensus 159 a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 159 AATNRPDI--LDPAL 171 (254)
T ss_dssp EEESCGGG--SCGGG
T ss_pred EccCCchh--CCHHH
Confidence 99999976 55543
No 290
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.73 E-value=3.8e-11 Score=136.65 Aligned_cols=159 Identities=18% Similarity=0.181 Sum_probs=97.2
Q ss_pred eEEEECCCCCCCccccceeEEecCC-------CEEEEECCCCCcHHHHHHHHHhcc----CCCccEEEECCccCCCCCHH
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAG-------KMVALVGSSGCGKSTVISLVARFY----DPSNGDILIDSLNIKDLDLK 329 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g-------~~~~ivG~sGsGKSTll~~l~g~~----~~~~G~i~~~g~~~~~~~~~ 329 (1139)
+++..|+. ..+++++++.+++| +.++|+||+|+|||||+++|+|++ .|++|.+..++.++......
T Consensus 23 ~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~ 99 (334)
T 1in4_A 23 SLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTS 99 (334)
T ss_dssp SGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHH
T ss_pred cHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHH
Confidence 44445542 35899999999877 899999999999999999999998 67788777666554321111
Q ss_pred HHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHH-HHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHH
Q 048639 330 SLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIY-NASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIAR 408 (1139)
Q Consensus 330 ~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~-~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lAR 408 (1139)
..+..|.+++|...+.. ++.|++..........-+. .......+...+..+ ++.. ...+...||+|+|||++++
T Consensus 100 ~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~--~li~-at~~~~~Ls~~l~sR~~l~- 174 (334)
T 1in4_A 100 LERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF--TLVG-ATTRSGLLSSPLRSRFGII- 174 (334)
T ss_dssp CCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC---------------CCC--EEEE-EESCGGGSCHHHHTTCSEE-
T ss_pred ccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcccccccccCCCe--EEEE-ecCCcccCCHHHHHhcCce-
Confidence 11457999999887765 7777774211000000000 000000001111111 1111 2344568999999998655
Q ss_pred HHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc
Q 048639 409 AIVKNPPILLLDEATSALDSESEKLVQEALERAM 442 (1139)
Q Consensus 409 al~~~~~illlDEpts~LD~~~~~~i~~~l~~~~ 442 (1139)
.+||+.+...+.+.+++..
T Consensus 175 ---------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 175 ---------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp ---------------EECCCCCHHHHHHHHHHHH
T ss_pred ---------------eeCCCCCHHHHHHHHHHHH
Confidence 7788888888888776643
No 291
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.73 E-value=4.1e-11 Score=136.39 Aligned_cols=151 Identities=17% Similarity=0.175 Sum_probs=97.5
Q ss_pred EEeEEEECCCCCCcccccceeEEEeCC-------cEEEEEcCCCCCHHHHHHHHhccc----cCCccEEEECCcccCCCC
Q 048639 888 FQNIKFNYPSRPEVTVLNNFSLQIEPG-------LKVALVGPSGAGKSSVLALLLRFY----DPNEGIILIDGKGIKEYN 956 (1139)
Q Consensus 888 ~~nvsf~Y~~~~~~~vL~~vsl~I~~G-------e~vaIvG~sGSGKSTL~~lL~rl~----~p~~G~I~idG~di~~~~ 956 (1139)
.++++..|. ...+++++++.|++| +.++|+||+|+|||||++++.+.. .+.+|.+..+|.|+..+.
T Consensus 21 ~~~l~~~~g---~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 21 PKSLDEFIG---QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp CSSGGGCCS---CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred CccHHHccC---cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 344555563 235899999999887 889999999999999999999998 677888877776654321
Q ss_pred hHHHhhhceEEccccccccccHHHHhccCCCcC----------CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCC
Q 048639 957 LRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAA----------SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLS 1026 (1139)
Q Consensus 957 l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~----------sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS 1026 (1139)
....+..+.+|+|.+.++. ++.+++....... ....+...++..++. +..+. ...||
T Consensus 98 ~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li--------~at~~----~~~Ls 164 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV--------GATTR----SGLLS 164 (334)
T ss_dssp HHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC---------------CCCEEE--------EEESC----GGGSC
T ss_pred HHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE--------EecCC----cccCC
Confidence 1112456899999887765 7777774210000 001111111111110 11222 34799
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhh
Q 048639 1027 GGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEAL 1070 (1139)
Q Consensus 1027 gGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~ 1070 (1139)
+|+|||++++ .+||+.+...+.+.|++.
T Consensus 165 ~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~ 192 (334)
T 1in4_A 165 SPLRSRFGII----------------LELDFYTVKELKEIIKRA 192 (334)
T ss_dssp HHHHTTCSEE----------------EECCCCCHHHHHHHHHHH
T ss_pred HHHHHhcCce----------------eeCCCCCHHHHHHHHHHH
Confidence 9999998655 778888888888888754
No 292
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.72 E-value=1e-10 Score=129.58 Aligned_cols=138 Identities=19% Similarity=0.228 Sum_probs=98.9
Q ss_pred EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceE
Q 048639 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGL 966 (1139)
Q Consensus 887 ~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~ 966 (1139)
+++++...|. ...+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++........+++++.
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 4566666663 235899999999999 99999999999999999999885 7999999988766555566778888
Q ss_pred Eccccc-cc-cccHHHHhcc-CCCcC-----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 967 VQQEPL-LF-SCSIRNNICY-GNEAA-----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 967 V~Qdp~-LF-~gTIreNL~~-~~~~~-----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
++|++. .+ .-++.||++. +.... ..++..+.+. .++ ..|||||+|+..+++|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~-----~ll---------------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLL---------------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHH-----HHH---------------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHH-----HHH---------------HHHhCCCCCCCEEEEE
Confidence 999864 33 3356777742 21110 1112222211 111 1378999999999999
Q ss_pred hcCCCCEEEeecccc
Q 048639 1039 LLKRPAIMLLDEATS 1053 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS 1053 (1139)
+..+|++ ||++..
T Consensus 184 ~t~~p~~--ld~~l~ 196 (278)
T 1iy2_A 184 ATNRPDI--LDPALL 196 (278)
T ss_dssp EESCTTS--SCHHHH
T ss_pred ecCCchh--CCHhHc
Confidence 9999987 687753
No 293
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.71 E-value=2.2e-09 Score=110.94 Aligned_cols=82 Identities=22% Similarity=0.338 Sum_probs=69.1
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhcccc-------------CCccEEEECCcccCCCChHHHhhhceEEccccccccc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYD-------------PNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSC 976 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~g 976 (1139)
...+|+.++|+||||||||||+++|.+.++ |..|+ +||++..-++.+.+++.+ .|+.+++.+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~ 89 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFG 89 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEE
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhh
Confidence 345799999999999999999999999986 67888 799999999999999876 699999999
Q ss_pred cHHHHhccCCCcCCHHHHHHHHHH
Q 048639 977 SIRNNICYGNEAASEAEIVEVSKK 1000 (1139)
Q Consensus 977 TIreNL~~~~~~~sd~ei~~al~~ 1000 (1139)
++.+|. ||.+ .+.+.++++.
T Consensus 90 ~~~~n~-YGt~---~~~v~~~l~~ 109 (197)
T 3ney_A 90 SYQGNM-FGTK---FETVHQIHKQ 109 (197)
T ss_dssp EETTEE-EEEE---HHHHHHHHHT
T ss_pred hhhcee-cccc---hhhHHHHHhc
Confidence 999995 7754 4556666554
No 294
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.71 E-value=1.1e-09 Score=119.30 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=63.5
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHH---hccCCCccEEE--------ECCccCC-CCCHHHHhcceEEEecC
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVA---RFYDPSNGDIL--------IDSLNIK-DLDLKSLRKNIGAVSQE 341 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~---g~~~~~~G~i~--------~~g~~~~-~~~~~~~~~~i~~v~Q~ 341 (1139)
++++.+ ++|++++|+|||||||||++++|+ |+..|++|.+. .+|.++. ......+++.+++++|.
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 99999999999 8999884 45677889999999965
Q ss_pred ------CCCCcccHHHHHh
Q 048639 342 ------PSLFTGSLMDNIK 354 (1139)
Q Consensus 342 ------~~l~~~ti~~ni~ 354 (1139)
.+++..++.+||.
T Consensus 96 ~~~~~~~~l~~~~v~~~i~ 114 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIR 114 (252)
T ss_dssp ETTEEEEEETTEECTTGGG
T ss_pred CCCCceEEECCeehhHHHH
Confidence 3456668888875
No 295
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.70 E-value=7.8e-10 Score=130.45 Aligned_cols=165 Identities=14% Similarity=0.173 Sum_probs=97.8
Q ss_pred ceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc--cccCCccEEEECCcccCCCChHHHhhhceEEccccccccccH-----
Q 048639 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLR--FYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSI----- 978 (1139)
Q Consensus 906 ~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r--l~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTI----- 978 (1139)
.+++++.++..+.|+|.|||||||+++.|.. ++.++.|++.+.++|.+...+..+.. =|+++. ++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecCHH
Confidence 3778889999999999999999999998876 66667788888888888765554432 133321 11
Q ss_pred --HHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHH----------HHHHHhcCCCC-E
Q 048639 979 --RNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRI----------AIARTLLKRPA-I 1045 (1139)
Q Consensus 979 --reNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrl----------alARALlr~p~-I 1045 (1139)
.+.|... ...-++-.+.++..|+.++- +|+..+. ..+|+||+|+. ++|+++-..|. +
T Consensus 231 ~a~~~L~~~--~~EmerR~~ll~~~Gv~~i~-----~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~iv 300 (512)
T 2ius_A 231 DAANALRWC--VNEMERRYKLMSALGVRNLA-----GYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIV 300 (512)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHTTCSSHH-----HHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCEEE
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHcCCccHH-----HHHHHHH---HHhhcCCcccccccccccchhccccccccCCcEE
Confidence 1122110 00011122444555544321 1221111 13678887752 46778888898 8
Q ss_pred EEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCch
Q 048639 1046 MLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLA 1094 (1139)
Q Consensus 1046 LlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ 1094 (1139)
+++||+++.+|.. ...+.+.|.+..... . .-+.++|++|||++
T Consensus 301 lvIDE~~~ll~~~-~~~~~~~l~~Lar~g----R-a~GI~LIlaTQrp~ 343 (512)
T 2ius_A 301 VLVDEFADLMMTV-GKKVEELIARLAQKA----R-AAGIHLVLATQRPS 343 (512)
T ss_dssp EEEETHHHHHHHH-HHHHHHHHHHHHHHC----G-GGTEEEEEEESCCC
T ss_pred EEEeCHHHHHhhh-hHHHHHHHHHHHHHh----h-hCCcEEEEEecCCc
Confidence 9999999999843 233444443221000 0 22345999999998
No 296
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.70 E-value=4e-09 Score=110.89 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=57.2
Q ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccc-cHHHHhc
Q 048639 908 SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSC-SIRNNIC 983 (1139)
Q Consensus 908 sl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~g-TIreNL~ 983 (1139)
|+++++|+.+||+||||||||||+++|.++++ .+.++|.++...+....+..++|++|++.+|.. +..+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57889999999999999999999999999973 588999888877666668889999999988754 4455543
No 297
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.70 E-value=1.4e-09 Score=112.59 Aligned_cols=127 Identities=16% Similarity=0.280 Sum_probs=55.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhccC-------------CCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFYD-------------PSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMD 351 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~~-------------~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ 351 (1139)
|++++|+||||||||||+++|+|+++ |..|++ +|.++...+.......+ .|+..+...++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 777775 77666555554443322 1333333334444
Q ss_pred HHhcCCCCCCHHHHHHHHHH----------hcHHHHHHh--------------CCCCCCccccccCCCCChHHHHHHHHH
Q 048639 352 NIKVGNMDADDEQIYNASMM----------ANAHSFISQ--------------LPDQYSTELGQRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 352 ni~~g~~~~~~~~~~~~~~~----------~~~~~~i~~--------------l~~g~~t~i~~~g~~LSgGqkqRi~lA 407 (1139)
|+ +|.+ .+.+.+.... .++ ..+.. -++.+...+.++|..-....+||++-|
T Consensus 76 ~~-yg~~---~~~i~~~l~~g~~~il~~~~~g~-~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~ 150 (186)
T 3a00_A 76 NY-YGST---VASVKQVSKSGKTCILDIDMQGV-KSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAA 150 (186)
T ss_dssp EE-EEEE---HHHHHHHHHTTCEEEEECCHHHH-HHHHTCGGGCCEEEEEECSCC-------------------------
T ss_pred ee-ccCc---HHHHHHHHHcCCeEEEEEcHHHH-HHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 43 3322 1222222211 111 11222 113344456677777778888999999
Q ss_pred HHHc-----cCCCEEEEeC
Q 048639 408 RAIV-----KNPPILLLDE 421 (1139)
Q Consensus 408 Ral~-----~~~~illlDE 421 (1139)
+.-+ ..+|.+|..+
T Consensus 151 ~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 151 QAELAYAETGAHDKVIVND 169 (186)
T ss_dssp --------CCCCSEEEECS
T ss_pred HHHHHhhcccCCcEEEECc
Confidence 8755 5667777765
No 298
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.68 E-value=1.4e-08 Score=125.60 Aligned_cols=97 Identities=20% Similarity=0.132 Sum_probs=76.3
Q ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHhccccC--CccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhc--
Q 048639 908 SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDP--NEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNIC-- 983 (1139)
Q Consensus 908 sl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p--~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~-- 983 (1139)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987655 67999 8999999999999999999999999999888888884
Q ss_pred cCCCcCCHHHHHHHHHHcCchHH
Q 048639 984 YGNEAASEAEIVEVSKKANIHDF 1006 (1139)
Q Consensus 984 ~~~~~~sd~ei~~al~~~~l~~~ 1006 (1139)
+|..+.. .++..+++.+...-+
T Consensus 82 pG~~~f~-~~~~~~l~~ad~~il 103 (665)
T 2dy1_A 82 PGYGDFV-GEIRGALEAADAALV 103 (665)
T ss_dssp CCSGGGH-HHHHHHHHHCSEEEE
T ss_pred CCccchH-HHHHHHHhhcCcEEE
Confidence 4433222 455666665554433
No 299
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.68 E-value=3.6e-08 Score=111.98 Aligned_cols=150 Identities=25% Similarity=0.341 Sum_probs=85.9
Q ss_pred cccceeE--EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEE-ECCccCCCCCHHHHhcceEEEecCCCCCcccHH
Q 048639 274 ILKGFSL--SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDIL-IDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLM 350 (1139)
Q Consensus 274 ~l~~is~--~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~ 350 (1139)
-|+.+-= -+++|+++.|.||+|||||||+..++.......|.+. ++... ..+. ...+++++.+|+
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~--------- 115 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS--------- 115 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG---------
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH---------
Confidence 4554322 5789999999999999999998888876554444433 32211 0010 011111111111
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccC--CCEEEEeCCCCCC--
Q 048639 351 DNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKN--PPILLLDEATSAL-- 426 (1139)
Q Consensus 351 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~--~~illlDEpts~L-- 426 (1139)
+.+ -. ..++ .|-+.+++++.++ |+++++|++++.+
T Consensus 116 --l~i----------------------------------~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~ 154 (349)
T 2zr9_A 116 --LLV----------------------------------SQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVPR 154 (349)
T ss_dssp --CEE----------------------------------EC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCH
T ss_pred --eEE----------------------------------ec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcch
Confidence 100 00 0122 2345578888755 9999999999998
Q ss_pred --------CH---HhHHHHHHHHHHH----c-CCCeEEEEecCcc----------------chhc-cCEEEEEeCcEEEE
Q 048639 427 --------DS---ESEKLVQEALERA----M-QGRTVILIAHRMS----------------TIVN-ADMIAVVEDGQVTE 473 (1139)
Q Consensus 427 --------D~---~~~~~i~~~l~~~----~-~~~tvi~itH~~~----------------~~~~-~d~i~~l~~G~i~~ 473 (1139)
|+ ...+.+.+.++++ . .++|+|+++|-.. .+.+ ||.++.++.+++..
T Consensus 155 ~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k 234 (349)
T 2zr9_A 155 AEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLK 234 (349)
T ss_dssp HHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEEC
T ss_pred hhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeee
Confidence 33 1222333444333 2 3899999999543 1444 89989888877665
Q ss_pred ecC
Q 048639 474 TGT 476 (1139)
Q Consensus 474 ~g~ 476 (1139)
.|+
T Consensus 235 ~g~ 237 (349)
T 2zr9_A 235 DGT 237 (349)
T ss_dssp SSS
T ss_pred cCc
Confidence 443
No 300
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.66 E-value=1.5e-08 Score=109.64 Aligned_cols=169 Identities=18% Similarity=0.158 Sum_probs=90.9
Q ss_pred ccccce-eEEEeCCcEEEEEcCCCCCHHHHHH-HHhccccCCccEEEECCcccCCCChHHHh---hhceEEccccccccc
Q 048639 902 TVLNNF-SLQIEPGLKVALVGPSGAGKSSVLA-LLLRFYDPNEGIILIDGKGIKEYNLRRLR---SQIGLVQQEPLLFSC 976 (1139)
Q Consensus 902 ~vL~~v-sl~I~~Ge~vaIvG~sGSGKSTL~~-lL~rl~~p~~G~I~idG~di~~~~l~~lR---~~i~~V~Qdp~LF~g 976 (1139)
+.|+.+ .--+++|+.++|+||+||||||++. ++....+...+.+++++.. +...++ +++++.+|+....
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~~-- 83 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEEK-- 83 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHHH--
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhhC--
Confidence 456666 6679999999999999999999965 4455555444556666533 233333 3466666653210
Q ss_pred cHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc--CCCCEEEeeccccC
Q 048639 977 SIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL--KRPAIMLLDEATSA 1054 (1139)
Q Consensus 977 TIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl--r~p~ILlLDEaTS~ 1054 (1139)
.|+...+. .. +.+ + ..+. .+..+.+. +....+....++.++ .+|+++++|++|+-
T Consensus 84 ---~~l~~~~~-~~-~~~-------~------~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l 140 (247)
T 2dr3_A 84 ---GMFAMVDA-FT-AGI-------G------KSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTTL 140 (247)
T ss_dssp ---TSEEEEEC-ST-TTT-------C------C--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGGG
T ss_pred ---CcEEEEec-ch-hhc-------c------cccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchHh
Confidence 12221100 00 000 0 0000 00000011 112334444455554 47999999999998
Q ss_pred C--CHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchh--------h-hcCCEEEEEeC
Q 048639 1055 L--DAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLAT--------V-INSDVIVVMDK 1107 (1139)
Q Consensus 1055 L--D~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~t--------i-~~~DrI~vl~~ 1107 (1139)
+ |+.........+.+.. . ..++|||+++|.... + ..||.|+.|+.
T Consensus 141 ~~~~~~~~~~~l~~l~~~~-------~-~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 141 YINKPAMARSIILQLKRVL-------A-GTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp TTTCGGGHHHHHHHHHHHH-------H-HTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHH-------H-HCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 8 5433333333333322 0 223459999997664 2 34899999964
No 301
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.65 E-value=7.9e-10 Score=117.26 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=51.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCH-------
Q 048639 256 NIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL------- 328 (1139)
Q Consensus 256 ~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~------- 328 (1139)
.|+++|++..|+ . ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~---------~-~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA---------R-TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE---------E-EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC---------C-EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 478888865442 1 566666 8999999999999999999999999999999999998843322
Q ss_pred -HHHhcceEEEecC
Q 048639 329 -KSLRKNIGAVSQE 341 (1139)
Q Consensus 329 -~~~~~~i~~v~Q~ 341 (1139)
...+.+++||+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 1235689999984
No 302
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.64 E-value=1.8e-10 Score=125.75 Aligned_cols=140 Identities=19% Similarity=0.220 Sum_probs=99.4
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhce
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIG 965 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~ 965 (1139)
.+++++...|. ...+++++++++++| ++|+||+|+|||||++++.+... .|.|.++|.++........+++++
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 45667777673 235899999999999 99999999999999999999875 799999998876655556677788
Q ss_pred EEccccc-cc-cccHHHHhc-cCCCcC-----CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHH
Q 048639 966 LVQQEPL-LF-SCSIRNNIC-YGNEAA-----SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIAR 1037 (1139)
Q Consensus 966 ~V~Qdp~-LF-~gTIreNL~-~~~~~~-----sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalAR 1037 (1139)
.++|+.. .+ .-++.||++ ++.... ..++..+.+ ..++ ..|||||+|+..+++
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHH---------------HHHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEE
Confidence 8888864 22 335667774 221100 111222211 1111 137899999999999
Q ss_pred HhcCCCCEEEeeccccC
Q 048639 1038 TLLKRPAIMLLDEATSA 1054 (1139)
Q Consensus 1038 ALlr~p~ILlLDEaTS~ 1054 (1139)
|+..+|++ ||++.-.
T Consensus 159 a~t~~p~~--ld~~l~r 173 (254)
T 1ixz_A 159 AATNRPDI--LDPALLR 173 (254)
T ss_dssp EEESCGGG--SCGGGGS
T ss_pred EccCCchh--CCHHHcC
Confidence 99999987 7887653
No 303
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.63 E-value=2.6e-09 Score=111.05 Aligned_cols=141 Identities=22% Similarity=0.178 Sum_probs=76.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCC-----------CccEEEECCccCCC--CCHHHHhcceEEEecCCCCCc--ccHHH
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDP-----------SNGDILIDSLNIKD--LDLKSLRKNIGAVSQEPSLFT--GSLMD 351 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~-----------~~G~i~~~g~~~~~--~~~~~~~~~i~~v~Q~~~l~~--~ti~~ 351 (1139)
+++|+|++|||||||++.+.|...+ ++|+|.++|.++.- ++....++..++++|...-.. -++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57899999976421 111111112223322110000 01111
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCCC-ccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 048639 352 NIKVGNMDADDEQIYNASMMANAHSFISQ-LPDQYS-TELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSE 429 (1139)
Q Consensus 352 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~-t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~ 429 (1139)
+... .+.+.+.... +.+.. -+...- ..++.+ ..|..-.++...+||+++.+|+++++| ||++|..
T Consensus 111 ~~~~----~s~~~~~~~~------~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~ 177 (191)
T 1oix_A 111 IAKH----LTYENVERWL------KELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDST 177 (191)
T ss_dssp TTCH----HHHHTHHHHH------HHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred CcCH----HHHHHHHHHH------HHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCC
Confidence 1100 0011111101 01111 111100 112222 122222234578899999999999999 9999999
Q ss_pred hHHHHHHHHHH
Q 048639 430 SEKLVQEALER 440 (1139)
Q Consensus 430 ~~~~i~~~l~~ 440 (1139)
....+.+.+.+
T Consensus 178 ~v~~l~~~l~~ 188 (191)
T 1oix_A 178 NVEAAFQTILT 188 (191)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 98888887754
No 304
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.63 E-value=2.4e-09 Score=126.25 Aligned_cols=159 Identities=19% Similarity=0.225 Sum_probs=93.8
Q ss_pred ceeEEecCCCEEEEECCCCCcHHHHHHHHHh--ccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHh
Q 048639 277 GFSLSIPAGKMVALVGSSGCGKSTVISLVAR--FYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIK 354 (1139)
Q Consensus 277 ~is~~i~~g~~~~ivG~sGsGKSTll~~l~g--~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~ 354 (1139)
.+++++.++..+.|.|++||||||+++.|.. ++.++.|++.+.+.|.+......+. .-|++.. +|.+|.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~-------~lPhl~~-~Vvtd~- 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE-------GIPHLLT-EVVTDM- 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT-------TCTTBSS-SCBCSH-
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc-------cCCcccc-eeecCH-
Confidence 4788999999999999999999999999886 6667778887766665543322221 1133321 111111
Q ss_pred cCCCCCCHHHHHHHHHH-----hcHHHHHHhCCCCCCccccc---cCCCCChHHHHHH----------HHHHHHccCCC-
Q 048639 355 VGNMDADDEQIYNASMM-----ANAHSFISQLPDQYSTELGQ---RGVQLSGGQKQRI----------AIARAIVKNPP- 415 (1139)
Q Consensus 355 ~g~~~~~~~~~~~~~~~-----~~~~~~i~~l~~g~~t~i~~---~g~~LSgGqkqRi----------~lARal~~~~~- 415 (1139)
++..+++.. ..-.+.+... |....-+- ....+||||+||. ++|+++...|.
T Consensus 230 --------~~a~~~L~~~~~EmerR~~ll~~~--Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~i 299 (512)
T 2ius_A 230 --------KDAANALRWCVNEMERRYKLMSAL--GVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYI 299 (512)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHT--TCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEE
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcE
Confidence 111111110 0001223333 22221111 1135788988763 46777888898
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHH----c-CCCeEEEEecCcc
Q 048639 416 ILLLDEATSALDSESEKLVQEALERA----M-QGRTVILIAHRMS 455 (1139)
Q Consensus 416 illlDEpts~LD~~~~~~i~~~l~~~----~-~~~tvi~itH~~~ 455 (1139)
++++||+++.+|... ..+.+.+..+ + .|.++|++|||++
T Consensus 300 vlvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 300 VVLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 899999999887432 3344444332 2 2779999999998
No 305
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.61 E-value=9.7e-08 Score=108.45 Aligned_cols=148 Identities=21% Similarity=0.319 Sum_probs=84.5
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccE-EEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGI-ILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEA 988 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~-I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~ 988 (1139)
-+++|+.+.|.||+|||||||+..+..-.....|. +++|.... .+. ...+++++-+|+..++ .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~--~~~-~~a~~lG~~~~~l~i~-----------~-- 120 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA--LDP-EYAKKLGVDTDSLLVS-----------Q-- 120 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCH-HHHHHTTCCGGGCEEE-----------C--
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC--cCH-HHHHHcCCCHHHeEEe-----------c--
Confidence 58899999999999999999988777554433343 44554321 111 1223333322221100 0
Q ss_pred CCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC--CCEEEeeccccCC----------C
Q 048639 989 ASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKR--PAIMLLDEATSAL----------D 1056 (1139)
Q Consensus 989 ~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~--p~ILlLDEaTS~L----------D 1056 (1139)
| .+. .|.+.++++++++ |+++|+||+|+-+ |
T Consensus 121 ----------------------~-------------~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd 163 (349)
T 2zr9_A 121 ----------------------P-------------DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGD 163 (349)
T ss_dssp ----------------------C-------------SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC---
T ss_pred ----------------------C-------------CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccccc
Confidence 0 111 2345678888765 9999999999998 3
Q ss_pred H---HHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCch----------------hhh-cCCEEEEEeCCEEEEecC
Q 048639 1057 A---ESERVIVSALEALNPKSSSCGELASRTTQITVAHRLA----------------TVI-NSDVIVVMDKGEVVEMGS 1115 (1139)
Q Consensus 1057 ~---~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~----------------ti~-~~DrI~vl~~G~ive~G~ 1115 (1139)
+ ...+.+.+.++++... ..+.++|||+++|-.. .+. .||.++.+..+++...|+
T Consensus 164 ~~~~~q~r~~~~~l~~L~~~-----a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 164 SHVGLQARLMSQALRKMTGA-----LNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp -CCCHHHHHHHHHHHHHHHH-----HHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred chhhHHHHHHHHHHHHHHHH-----HHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2 1112334444432100 0022345999999443 133 489999998877665554
No 306
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.60 E-value=4e-08 Score=116.42 Aligned_cols=177 Identities=14% Similarity=0.163 Sum_probs=108.8
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCcc-EEEECCccCCCCCHHHHhcce-EEEecCCCCCcccHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG-DILIDSLNIKDLDLKSLRKNI-GAVSQEPSLFTGSLM 350 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~i-~~v~Q~~~l~~~ti~ 350 (1139)
+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+.+ .+...+..++ +....- . .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~------~-~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNI------N-A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTC------C-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCC------C-H
Confidence 478888888999999999999999999999999998776555 56554432 2333333221 100000 0 1
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCH
Q 048639 351 DNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV--KNPPILLLDEATSALDS 428 (1139)
Q Consensus 351 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~--~~~~illlDEpts~LD~ 428 (1139)
+.+..|. .++++....... .+.+...| -.+.+ ...+|++|.+ +.||.+. .+|+++++|+++.-.+.
T Consensus 261 ~~l~~g~--l~~~~~~~~~~a---~~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 261 QNLRTGK--LTPEDWGKLTMA---MGSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHTSC--CCHHHHHHHHHH---HHHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHhcCC--CCHHHHHHHHHH---HHHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 1222232 233333222211 12233322 12222 3479999886 5677776 58999999999998753
Q ss_pred H--------hHHHHHHHHHHHc--CCCeEEEEec---------C--cc--------chhc-cCEEEEEeCcEE
Q 048639 429 E--------SEKLVQEALERAM--QGRTVILIAH---------R--MS--------TIVN-ADMIAVVEDGQV 471 (1139)
Q Consensus 429 ~--------~~~~i~~~l~~~~--~~~tvi~itH---------~--~~--------~~~~-~d~i~~l~~G~i 471 (1139)
. ....+.+.|+.+. .+.+||+++| + +. .+.+ ||.|+.|..++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2 1234555566553 2889999999 2 32 3444 999999987654
No 307
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.59 E-value=1.1e-08 Score=105.17 Aligned_cols=81 Identities=16% Similarity=0.178 Sum_probs=64.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccC-CccEEE----------ECCcccCCCChHHHhhhceEEccccccccccHHHH
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYDP-NEGIIL----------IDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNN 981 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-~~G~I~----------idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreN 981 (1139)
+|+.++|+||||||||||+++|.+++++ ..|.|. +||++...++.+.+++. ++|+.+++.+++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 6999999999999999999999999863 344443 57888888888888774 678999999999999
Q ss_pred hccCCCcCCHHHHHHHHHH
Q 048639 982 ICYGNEAASEAEIVEVSKK 1000 (1139)
Q Consensus 982 L~~~~~~~sd~ei~~al~~ 1000 (1139)
.++. +.+.+.++++.
T Consensus 81 -~yg~---~~~~i~~~l~~ 95 (180)
T 1kgd_A 81 -MYGT---KLETIRKIHEQ 95 (180)
T ss_dssp -EEEE---EHHHHHHHHHT
T ss_pred -cccc---cHHHHHHHHHC
Confidence 4553 35566666653
No 308
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.58 E-value=2.4e-09 Score=131.59 Aligned_cols=157 Identities=17% Similarity=0.185 Sum_probs=102.7
Q ss_pred CccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCc-cEEEECCccCCCCCHHHHhcceEEEecCC--------
Q 048639 272 QLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSN-GDILIDSLNIKDLDLKSLRKNIGAVSQEP-------- 342 (1139)
Q Consensus 272 ~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~-G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~-------- 342 (1139)
..+++++++.+++|+.++|+||+|||||||+++|++++++.. |.+.+++.+.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 358999999999999999999999999999999999999987 8888888765543 34688887754
Q ss_pred --------------CCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHH
Q 048639 343 --------------SLFT-GSLMDNIKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIA 407 (1139)
Q Consensus 343 --------------~l~~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lA 407 (1139)
|.+. .++.+|+..++.......+... ......+.+..+. . -......+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~~----~-~~~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDVR----H-DPFQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEEC----C-CCC----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceEE----e-chhhcCCccccccccccCc
Confidence 2222 2455555443211000000000 0000111121111 0 0112245999999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHH
Q 048639 408 RAIVKNPPILLLDEATSALDSESEKLVQEALER 440 (1139)
Q Consensus 408 Ral~~~~~illlDEpts~LD~~~~~~i~~~l~~ 440 (1139)
+....++.+|+|||.-. |++.....+.+.|..
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 788888888777754
No 309
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.55 E-value=1.8e-09 Score=114.55 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=51.7
Q ss_pred cEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh-------
Q 048639 885 RIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL------- 957 (1139)
Q Consensus 885 ~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l------- 957 (1139)
.|+++|+...|. . ++++.+ +.++|+||||||||||+++|.+++.|++|.|.++|.++...+.
T Consensus 9 ~l~l~~~~~~~~------~----~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA------R----TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE------E----EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC------C----EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 478888866541 1 466666 8999999999999999999999999999999999999844322
Q ss_pred -HHHhhhceEEccc
Q 048639 958 -RRLRSQIGLVQQE 970 (1139)
Q Consensus 958 -~~lR~~i~~V~Qd 970 (1139)
..++.++++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2346778999985
No 310
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.54 E-value=1.7e-09 Score=123.52 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=88.7
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHH
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNN 981 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreN 981 (1139)
++|+++|+.+++|+.++|+||+|||||||+++|.+.+ +|.+..- +.. .+.++..++++||...+| .++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~--~~~---~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV--NLP---LDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC--SSC---TTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEE--ecc---chhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999964 6777651 111 122344588999987653 344
Q ss_pred hccCCC---cC---C----HHHHHHHHHH---cCchHHHhhCCCCcc-----ccccCCCCCCChHHHHHHHHHHHhcCCC
Q 048639 982 ICYGNE---AA---S----EAEIVEVSKK---ANIHDFISSLPDGYD-----TVVGEKGCQLSGGQKQRIAIARTLLKRP 1043 (1139)
Q Consensus 982 L~~~~~---~~---s----d~ei~~al~~---~~l~~~i~~lp~gld-----t~v~e~G~~LSgGQrQrlalARALlr~p 1043 (1139)
++...+ .. . +..+.+.+.- +.+. ...|+.++ -.+..+...+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~---tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLE---KKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEEC---CSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcchHHHHHHHHhcCCCeEeec---cCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 443221 00 0 1222333220 0000 00011111 0223344568999999999998899999
Q ss_pred CEEE-eecccc
Q 048639 1044 AIML-LDEATS 1053 (1139)
Q Consensus 1044 ~ILl-LDEaTS 1053 (1139)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999987
No 311
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.52 E-value=1.1e-08 Score=105.71 Aligned_cols=73 Identities=25% Similarity=0.349 Sum_probs=61.7
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccC-------------CCccEEEECCccCCCCCHHHHhcceEEEecCCCCCc
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYD-------------PSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFT 346 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~-------------~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~ 346 (1139)
+...+|++++|+||||||||||++.|++.++ |..|+ ++|.+...++.+..++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 4445899999999999999999999999986 67787 799998888888888765 58889999
Q ss_pred ccHHHHHhcCCC
Q 048639 347 GSLMDNIKVGNM 358 (1139)
Q Consensus 347 ~ti~~ni~~g~~ 358 (1139)
+++.+| .+|.+
T Consensus 89 ~~~~~n-~YGt~ 99 (197)
T 3ney_A 89 GSYQGN-MFGTK 99 (197)
T ss_dssp EEETTE-EEEEE
T ss_pred hhhhce-ecccc
Confidence 999999 48854
No 312
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.50 E-value=4.5e-08 Score=115.95 Aligned_cols=172 Identities=12% Similarity=0.149 Sum_probs=107.3
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc-EEEECCcccCCCChHHHhhhc-----eEEcccccccc
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG-IILIDGKGIKEYNLRRLRSQI-----GLVQQEPLLFS 975 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G-~I~idG~di~~~~l~~lR~~i-----~~V~Qdp~LF~ 975 (1139)
+.|+++..-+++|+.+.|.||+|+||||++..+.+...+..| .+.+-+.+ ++...+++++ ++-+|
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~~~------ 261 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNINAQ------ 261 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCCHH------
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCCHH------
Confidence 578888888999999999999999999999999988766445 56654433 4556665553 22222
Q ss_pred ccHHHHhccCCCcCCHHHH---HHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc--CCCCEEEeec
Q 048639 976 CSIRNNICYGNEAASEAEI---VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL--KRPAIMLLDE 1050 (1139)
Q Consensus 976 gTIreNL~~~~~~~sd~ei---~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl--r~p~ILlLDE 1050 (1139)
++.-| ..++++. .++++.. ...| -.+.+ ...+|.+|.+ +.+|++. .+|+++|+|+
T Consensus 262 -----~l~~g--~l~~~~~~~~~~a~~~l------~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~ 321 (454)
T 2r6a_A 262 -----NLRTG--KLTPEDWGKLTMAMGSL------SNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDY 321 (454)
T ss_dssp -----HHHTS--CCCHHHHHHHHHHHHHH------HSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEEC
T ss_pred -----HHhcC--CCCHHHHHHHHHHHHHH------hcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEcc
Confidence 12112 2344433 3333322 1111 11112 1358999876 6677776 5799999999
Q ss_pred cccCCCHH-----HH---HHHHHHHHhhCCCCCCccccCCCeEEEEEec-----------Cch--------hhh-cCCEE
Q 048639 1051 ATSALDAE-----SE---RVIVSALEALNPKSSSCGELASRTTQITVAH-----------RLA--------TVI-NSDVI 1102 (1139)
Q Consensus 1051 aTS~LD~~-----te---~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaH-----------rl~--------ti~-~~DrI 1102 (1139)
++.-.+.. .. ..+.+.|+.+. ...+++ ||+++| |+. .+. +||.|
T Consensus 322 l~~~~~~~~~~~~~~~~i~~i~~~Lk~lA-------ke~~i~-vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~v 393 (454)
T 2r6a_A 322 LQLIQGSGRSKENRQQEVSEISRSLKALA-------RELEVP-VIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIV 393 (454)
T ss_dssp GGGSCCSCC----CHHHHHHHHHHHHHHH-------HHHTCC-EEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEE
T ss_pred HHHhccCCCCCCCHHHHHHHHHHHHHHHH-------HHhCCe-EEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEE
Confidence 99987532 12 34455555432 012444 999999 132 344 49999
Q ss_pred EEEeCCEE
Q 048639 1103 VVMDKGEV 1110 (1139)
Q Consensus 1103 ~vl~~G~i 1110 (1139)
++|..++.
T Consensus 394 i~l~r~~~ 401 (454)
T 2r6a_A 394 AFLYRDDY 401 (454)
T ss_dssp EEEEETTC
T ss_pred EEEecccc
Confidence 99987654
No 313
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.48 E-value=7.4e-09 Score=127.21 Aligned_cols=157 Identities=14% Similarity=0.163 Sum_probs=102.8
Q ss_pred cccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCc-cEEEECCcccCCCChHHHhhhceEEccccc-------
Q 048639 901 VTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNE-GIILIDGKGIKEYNLRRLRSQIGLVQQEPL------- 972 (1139)
Q Consensus 901 ~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~-G~I~idG~di~~~~l~~lR~~i~~V~Qdp~------- 972 (1139)
..+++++++.+++|+.++|+||+|+|||||+++|.++..+.. |.+.+++.+.... ...++++||...
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 358999999999999999999999999999999999999887 8899988776543 345788877541
Q ss_pred ---------------cc-cccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH
Q 048639 973 ---------------LF-SCSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA 1036 (1139)
Q Consensus 973 ---------------LF-~gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA 1036 (1139)
.| ..++.+|+...+.......+... ......+++.. ++..- .....+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~----~~~~~-~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGD----VRHDP-FQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCE----ECCCC-C----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCce----EEech-hhcCCccccccccccCc
Confidence 11 12333343322100000000000 00001111111 11111 11134899999999999
Q ss_pred HHhcCCCCEEEeeccccCCCHHHHHHHHHHHHh
Q 048639 1037 RTLLKRPAIMLLDEATSALDAESERVIVSALEA 1069 (1139)
Q Consensus 1037 RALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~ 1069 (1139)
+....++.+|+|||... |++.....+.+.|++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999998 899999999999985
No 314
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.46 E-value=1.9e-08 Score=106.00 Aligned_cols=54 Identities=11% Similarity=0.193 Sum_probs=45.1
Q ss_pred ceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccC
Q 048639 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYG 985 (1139)
Q Consensus 906 ~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~ 985 (1139)
++--++++|+.++|+|++||||||+++.|.+.++ .+.+++||++++++ +|+..+
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 3445688899999999999999999999999874 37899999999876 676554
No 315
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.44 E-value=2.8e-09 Score=121.72 Aligned_cols=137 Identities=13% Similarity=0.162 Sum_probs=87.8
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDN 352 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~n 352 (1139)
.+++++++.+++|+.++|+||+|||||||+++|+|.+ +|.+..-+ ... +.++..+++++|.+.++ .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~~~---~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--LPL---DRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--SCT---TTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--ccc---hhHHHHHHHhcchhHHH----HHH
Confidence 4899999999999999999999999999999999964 68776511 111 12233478888887542 233
Q ss_pred HhcCCC---CC-CHHHHHHHHHHhcHHHHHHhC---------CCCCC-----ccccccCCCCChHHHHHHHHHHHHccCC
Q 048639 353 IKVGNM---DA-DDEQIYNASMMANAHSFISQL---------PDQYS-----TELGQRGVQLSGGQKQRIAIARAIVKNP 414 (1139)
Q Consensus 353 i~~g~~---~~-~~~~~~~~~~~~~~~~~i~~l---------~~g~~-----t~i~~~g~~LSgGqkqRi~lARal~~~~ 414 (1139)
+..... .. ....+. ....+.+.+... |+.++ -.+..+...+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 332211 00 000010 111122233210 00000 1244566779999999999998999999
Q ss_pred CEEE-EeCCCC
Q 048639 415 PILL-LDEATS 424 (1139)
Q Consensus 415 ~ill-lDEpts 424 (1139)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999987
No 316
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.44 E-value=7.5e-08 Score=119.02 Aligned_cols=133 Identities=14% Similarity=0.123 Sum_probs=97.9
Q ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHHhccCC--CccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhc-
Q 048639 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDP--SNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKV- 355 (1139)
Q Consensus 279 s~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~- 355 (1139)
++++++|..++|+|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++..+++.||.-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456789999999999999999999999987765 67988 78888888888888899999999998887777777752
Q ss_pred -CCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHH
Q 048639 356 -GNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLV 434 (1139)
Q Consensus 356 -g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i 434 (1139)
|..+. ..+ ..+-.-..+..++++| |+.++|+.+...+
T Consensus 82 pG~~~f-~~~----------------------------------------~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~ 119 (665)
T 2dy1_A 82 PGYGDF-VGE----------------------------------------IRGALEAADAALVAVS-AEAGVQVGTERAW 119 (665)
T ss_dssp CCSGGG-HHH----------------------------------------HHHHHHHCSEEEEEEE-TTTCSCHHHHHHH
T ss_pred CCccch-HHH----------------------------------------HHHHHhhcCcEEEEEc-CCcccchhHHHHH
Confidence 22110 000 0111113466788888 9999999888655
Q ss_pred HHHHHHHcCCCeEEEEecCccch
Q 048639 435 QEALERAMQGRTVILIAHRMSTI 457 (1139)
Q Consensus 435 ~~~l~~~~~~~tvi~itH~~~~~ 457 (1139)
..+. . .+.++|++.|+++..
T Consensus 120 ~~~~-~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 120 TVAE-R--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHH-H--TTCCEEEEEECGGGC
T ss_pred HHHH-H--ccCCEEEEecCCchh
Confidence 4433 2 478899999988764
No 317
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.38 E-value=2.1e-08 Score=103.04 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=53.1
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccCC-CccEEE----------ECCccCCCCCHHHHhcceEEEecCCCCCcccHHH
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYDP-SNGDIL----------IDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMD 351 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~~-~~G~i~----------~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ 351 (1139)
.+|++++|+||||||||||+++|.+.+++ ..|.|. ++|.++...+.+.+++. +.|+.+++..++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999874 445553 35666555666666543 45777788888888
Q ss_pred HHhcCC
Q 048639 352 NIKVGN 357 (1139)
Q Consensus 352 ni~~g~ 357 (1139)
| .+|.
T Consensus 80 n-~yg~ 84 (180)
T 1kgd_A 80 A-MYGT 84 (180)
T ss_dssp E-EEEE
T ss_pred c-cccc
Confidence 8 5664
No 318
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.36 E-value=8.7e-08 Score=100.07 Aligned_cols=138 Identities=24% Similarity=0.296 Sum_probs=73.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc-----cC------CccEEEECCcccC----CC-ChHHHhhhceEEccccc--c--cc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFY-----DP------NEGIILIDGKGIK----EY-NLRRLRSQIGLVQQEPL--L--FS 975 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~-----~p------~~G~I~idG~di~----~~-~l~~lR~~i~~V~Qdp~--L--F~ 975 (1139)
+++|+|++|||||||++.|.+.. .| ..|+|.+||.++. +. +.+.+|+......|++. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 69999999999999999999973 23 3678999997652 11 22233333333333321 1 22
Q ss_pred ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccC
Q 048639 976 CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYD-TVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSA 1054 (1139)
Q Consensus 976 gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gld-t~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~ 1054 (1139)
.+-.. +.+++...++.. .+. .+.+.- -.++..- .|..-.......||++.++|+++++| ||+
T Consensus 87 ~~~~~---------s~~~~~~~~~~~--~~~---~~~~~~i~~v~nK~-Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sa 149 (199)
T 2f9l_A 87 IAKHL---------TYENVERWLKEL--RDH---ADSNIVIMLVGNKS-DLRHLRAVPTDEARAFAEKNNLSFIE--TSA 149 (199)
T ss_dssp TTCHH---------HHHTHHHHHHHH--HHH---SCTTCEEEEEEECT-TCGGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred CcCHH---------HHHHHHHHHHHH--HHh---cCCCCeEEEEEECc-ccccccCcCHHHHHHHHHHcCCeEEE--EeC
Confidence 22111 111111111110 000 000000 0011110 01100011234589999999999999 999
Q ss_pred CCHHHHHHHHHHHHhh
Q 048639 1055 LDAESERVIVSALEAL 1070 (1139)
Q Consensus 1055 LD~~te~~I~~~l~~~ 1070 (1139)
+|...-..+.+.|.+.
T Consensus 150 l~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 150 LDSTNVEEAFKNILTE 165 (199)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999988888877643
No 319
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.35 E-value=7.8e-07 Score=104.68 Aligned_cols=113 Identities=24% Similarity=0.322 Sum_probs=75.8
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNI 353 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni 353 (1139)
.++++++++++| +.|+||+|+|||||++++++.... .+-++ +..+.+
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------------~f~~i---------s~~~~~ 86 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------------PFFHI---------SGSDFV 86 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------------CEEEE---------EGGGTT
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------------CeeeC---------CHHHHH
Confidence 677788888888 889999999999999999986421 01111 000000
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC---------
Q 048639 354 KVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS--------- 424 (1139)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts--------- 424 (1139)
.. .+| .|++++|-.+++|....|.||++||+-+
T Consensus 87 -------------------------~~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~ 128 (476)
T 2ce7_A 87 -------------------------EL-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGL 128 (476)
T ss_dssp -------------------------TC-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-----
T ss_pred -------------------------HH-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhccccc
Confidence 00 011 2688999999999999999999999943
Q ss_pred -CCCHHhHHHHHHHHHHH-----cCCCeEEEEecCccch
Q 048639 425 -ALDSESEKLVQEALERA-----MQGRTVILIAHRMSTI 457 (1139)
Q Consensus 425 -~LD~~~~~~i~~~l~~~-----~~~~tvi~itH~~~~~ 457 (1139)
+.|.+..+.+.+.+..+ ..+..+|..||+++.+
T Consensus 129 ~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 129 GGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp ----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred CcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 56666555555555443 1356888899998655
No 320
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.30 E-value=1.5e-07 Score=96.75 Aligned_cols=99 Identities=14% Similarity=0.201 Sum_probs=63.6
Q ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCc--ccCCCChH----HHhhhceEEccccc------
Q 048639 905 NNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK--GIKEYNLR----RLRSQIGLVQQEPL------ 972 (1139)
Q Consensus 905 ~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~--di~~~~l~----~lR~~i~~V~Qdp~------ 972 (1139)
+++++++.+| .++|+|+||||||||+.+|..+..+..|...-.+. ++-..+.. ..+..|.++.|+|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6889999999 99999999999999999999988777665433221 11111100 23457899999862
Q ss_pred ----cccccHHHH----hccCCCcCCHHHHHHHHHHcCch
Q 048639 973 ----LFSCSIRNN----ICYGNEAASEAEIVEVSKKANIH 1004 (1139)
Q Consensus 973 ----LF~gTIreN----L~~~~~~~sd~ei~~al~~~~l~ 1004 (1139)
.+..++..+ +.......+.+++.+.++.+++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCC
Confidence 111122111 11111235678898888888774
No 321
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.29 E-value=2.7e-07 Score=96.34 Aligned_cols=35 Identities=26% Similarity=0.277 Sum_probs=30.0
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHH
Q 048639 404 IAIARAIVKNPPILLLDEATSALDSESEKLVQEALER 440 (1139)
Q Consensus 404 i~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~ 440 (1139)
...||+++.+|+++++| |||+|......+.+.+.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45699999999999999 999999988877777654
No 322
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.26 E-value=2.4e-07 Score=97.29 Aligned_cols=85 Identities=18% Similarity=0.202 Sum_probs=51.6
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEcccccc-----------cccc
Q 048639 909 LQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLL-----------FSCS 977 (1139)
Q Consensus 909 l~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~L-----------F~gT 977 (1139)
++|++|+.++|+|++||||||++++|.+++.|..| +.+ +....... ...+.++++++|++.. +..+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEe
Confidence 46889999999999999999999999999977555 222 11222111 1122347778877643 3344
Q ss_pred HHHHhccCCCcCCHHHHHHHHHH
Q 048639 978 IRNNICYGNEAASEAEIVEVSKK 1000 (1139)
Q Consensus 978 IreNL~~~~~~~sd~ei~~al~~ 1000 (1139)
++.|+ ++ ...+++.++++.
T Consensus 78 ~~~~~-~g---~~~~~i~~~l~~ 96 (207)
T 2j41_A 78 YVGNY-YG---TPVQYVKDTMDE 96 (207)
T ss_dssp ETTEE-EE---EEHHHHHHHHHT
T ss_pred ECCee-cC---CCHHHHHHHHHc
Confidence 45552 33 235566666543
No 323
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.23 E-value=1.1e-07 Score=102.44 Aligned_cols=52 Identities=25% Similarity=0.418 Sum_probs=35.9
Q ss_pred cEEEEeE-EEECCCCCCcccccceeEEEeC---CcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 885 RIEFQNI-KFNYPSRPEVTVLNNFSLQIEP---GLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 885 ~I~~~nv-sf~Y~~~~~~~vL~~vsl~I~~---Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
.++++|| +++|.+ +.++|+|+||+|++ |++|+|+|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 34799999999999 9999999999999999999999855
No 324
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.23 E-value=1.3e-07 Score=102.12 Aligned_cols=52 Identities=29% Similarity=0.403 Sum_probs=36.2
Q ss_pred cEEEEeE-EEECCCCCCCccccceeEEecC---CCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 256 NIDIRDV-CFAYPSRPDQLILKGFSLSIPA---GKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 256 ~i~~~~v-~~~y~~~~~~~~l~~is~~i~~---g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.++++|+ +|+|++ +.++|+|+||++++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 35699999999999 9999999999999999999999865
No 325
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.22 E-value=2.4e-07 Score=97.46 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=42.7
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcC
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVG 356 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g 356 (1139)
=++++|++++|+|++||||||+++.|.+.++ .+.+++|++.++++ +|+.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 3567899999999999999999999999874 37899999988875 566554
No 326
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.22 E-value=2e-07 Score=97.47 Aligned_cols=60 Identities=18% Similarity=0.156 Sum_probs=43.0
Q ss_pred eEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCC
Q 048639 279 SLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPS 343 (1139)
Q Consensus 279 s~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~ 343 (1139)
.++.++|++++|+|||||||||++++|++.+ |.+.++|.++... ....+..+++++|++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDED 82 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcc
Confidence 4667899999999999999999999999987 9999999776421 1112234677777643
No 327
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.21 E-value=5.1e-08 Score=115.38 Aligned_cols=127 Identities=20% Similarity=0.252 Sum_probs=91.1
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCC-CCcc-cHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPS-LFTG-SLM 350 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~-l~~~-ti~ 350 (1139)
.+++++++++++| +.|+||+|+|||||+++|++... .|.+.++|.++.+.......+++..++|+.. ..+. .+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~I 129 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFI 129 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEE
Confidence 4789999999999 99999999999999999999975 7899999988866544444566778888864 3333 566
Q ss_pred HHHh-cCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 048639 351 DNIK-VGNMDA-----DDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS 424 (1139)
Q Consensus 351 ~ni~-~g~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts 424 (1139)
|+|. ++.... ..++..+.. ...+. .|||||+|+..+++|...+|++ |||+.-
T Consensus 130 DEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 130 DEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp ECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred ehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 7773 332111 112111111 11221 3788999999999999999988 899876
Q ss_pred C
Q 048639 425 A 425 (1139)
Q Consensus 425 ~ 425 (1139)
.
T Consensus 188 r 188 (499)
T 2dhr_A 188 R 188 (499)
T ss_dssp S
T ss_pred c
Confidence 3
No 328
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.21 E-value=8.5e-08 Score=100.36 Aligned_cols=60 Identities=27% Similarity=0.442 Sum_probs=46.8
Q ss_pred eEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEE--EECCcccC
Q 048639 890 NIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII--LIDGKGIK 953 (1139)
Q Consensus 890 nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I--~idG~di~ 953 (1139)
|++..+. ...+.+..++..++|+.++|+|+|||||||++++|.+.+. ..|.+ ++||.++.
T Consensus 4 ~~~~~~~---~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 4 NIKWHEC---SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp ------C---CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCccccc---ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 4554442 2346788889999999999999999999999999999987 77988 99987665
No 329
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.20 E-value=4.9e-07 Score=103.80 Aligned_cols=45 Identities=29% Similarity=0.420 Sum_probs=34.8
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc--cccCCccEEEECC
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLR--FYDPNEGIILIDG 949 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r--l~~p~~G~I~idG 949 (1139)
.+|++++++++ .|+|||++|||||||++.|.| +.++.+|.+.-..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 47999999998 999999999999999999999 6777777665433
No 330
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.20 E-value=4e-07 Score=95.17 Aligned_cols=61 Identities=18% Similarity=0.255 Sum_probs=46.0
Q ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH-HhhhceEEccccccc
Q 048639 908 SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR-LRSQIGLVQQEPLLF 974 (1139)
Q Consensus 908 sl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~-lR~~i~~V~Qdp~LF 974 (1139)
.++-++|+.++|+|++||||||++++|.+.+ |.+.+||.++.. ... .+...++++|++.++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcccc
Confidence 3667889999999999999999999999987 899999988753 222 234678999986544
No 331
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.19 E-value=6.1e-07 Score=102.96 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=34.2
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHh--ccCCCccEEEE
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVAR--FYDPSNGDILI 318 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g--~~~~~~G~i~~ 318 (1139)
.+|++++++++ .++|||++|||||||++.|.| ++++.+|.+.-
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~ 69 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTR 69 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccC
Confidence 48999999998 999999999999999999999 66777776643
No 332
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.18 E-value=1.1e-06 Score=100.49 Aligned_cols=143 Identities=13% Similarity=0.222 Sum_probs=83.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhccC-----------CCccEEEECCccCCCCCHHHHhcceEEEecCCCC----CcccHH-
Q 048639 287 MVALVGSSGCGKSTVISLVARFYD-----------PSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSL----FTGSLM- 350 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~-----------~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l----~~~ti~- 350 (1139)
.++|+|++|||||||++.|.|... |+.|.|.++|.++. +....|++.|.|.- |..|..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 499999999999999999999865 67799999986542 22345666664431 111211
Q ss_pred ----HHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhC--CCCCCccccccCCCCChHHHHHHHHH----HHH-ccCCCEEE
Q 048639 351 ----DNIKVGN-MDADDEQIYNASMMANAHSFISQL--PDQYSTELGQRGVQLSGGQKQRIAIA----RAI-VKNPPILL 418 (1139)
Q Consensus 351 ----~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l--~~g~~t~i~~~g~~LSgGqkqRi~lA----Ral-~~~~~ill 418 (1139)
|++.+.- .........+... ...+.+..+ ++.---.++.+...+|+|++||+.++ +++ ..+|++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~-- 330 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV-- 330 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE--
T ss_pred HHhCCEEEEEEECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE--
Confidence 1222210 0111100111111 112233332 11111234566667898899988887 766 445554
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHH
Q 048639 419 LDEATSALDSESEKLVQEALERA 441 (1139)
Q Consensus 419 lDEpts~LD~~~~~~i~~~l~~~ 441 (1139)
+|+|++|......+.+.|.+.
T Consensus 331 --~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 --IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp --EECBTTTTBSHHHHHHHHHHH
T ss_pred --EEEECCCCcCHHHHHHHHHHH
Confidence 899999999888888877654
No 333
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.18 E-value=3.5e-06 Score=99.07 Aligned_cols=119 Identities=23% Similarity=0.376 Sum_probs=76.5
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHH
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNN 981 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreN 981 (1139)
..++++++.+++| +.|+||+|+|||||++++.+.... |+ +.-+..
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~------------------------------~f-~~is~~-- 83 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV------------------------------PF-FHISGS-- 83 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC------------------------------CE-EEEEGG--
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC------------------------------Ce-eeCCHH--
Confidence 3677888888888 999999999999999999984310 10 000000
Q ss_pred hccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeecccc--------
Q 048639 982 ICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATS-------- 1053 (1139)
Q Consensus 982 L~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS-------- 1053 (1139)
+++... +| .+++++|-.+++|....|.||++||+.+
T Consensus 84 -----------------------~~~~~~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 84 -----------------------DFVELF-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp -----------------------GTTTCC-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----
T ss_pred -----------------------HHHHHH-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc
Confidence 010000 11 2678899999999999999999999944
Q ss_pred --CCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh
Q 048639 1054 --ALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV 1096 (1139)
Q Consensus 1054 --~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti 1096 (1139)
+.|.+.++.+.+.+...-+- ....+..||..||+.+.+
T Consensus 128 ~~g~~~~~~~~l~~LL~~ld~~-----~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVEMDGF-----DSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp -----CHHHHHHHHHHHHHHHS-----CGGGTEEEEEEESCGGGS
T ss_pred cCcCcHHHHHHHHHHHHHHhcc-----CCCCCEEEEEecCChhhh
Confidence 56766666666666543100 002345689999998654
No 334
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.17 E-value=8.7e-08 Score=100.27 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=46.4
Q ss_pred eEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEE--EECCccCC
Q 048639 261 DVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI--LIDSLNIK 324 (1139)
Q Consensus 261 ~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i--~~~g~~~~ 324 (1139)
|++..+. .....+..++..++|++++|+|||||||||++++|++.+. ..|.+ .+||.++.
T Consensus 4 ~~~~~~~---~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 4 NIKWHEC---SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp ------C---CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCccccc---ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 4554442 3457788999999999999999999999999999999987 77988 88876553
No 335
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.15 E-value=1.1e-06 Score=100.36 Aligned_cols=138 Identities=18% Similarity=0.264 Sum_probs=83.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccc-----------CCccEEEECCcccCCCChHHHhhhceEEcccccc----ccccHHH
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYD-----------PNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLL----FSCSIRN 980 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~-----------p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~L----F~gTIre 980 (1139)
+|+|+|++|||||||++.|.+... |..|.|.++|.++. +....|++.|.|.- |..|+ +
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHH-H
Confidence 399999999999999999999765 67799999997653 22346666665431 22232 2
Q ss_pred Hhcc----------CCCcC-CHHH---HHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHH----HHh-cC
Q 048639 981 NICY----------GNEAA-SEAE---IVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIA----RTL-LK 1041 (1139)
Q Consensus 981 NL~~----------~~~~~-sd~e---i~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalA----RAL-lr 1041 (1139)
.+.- .++.. .++. +.+.++..++. ..| --.|......+|+|++|++.++ +++ ..
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~----~~p---~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~ 326 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVS----GKP---ILVTLNKIDKINGDLYKKLDLVEKLSKELYSP 326 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCC----SCC---EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSC
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcC----CCC---EEEEEECCCCCCchHHHHHHHHHHHHHHhcCC
Confidence 2211 11100 1122 23334333321 111 1122334445788888888877 666 44
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhC
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALN 1071 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~ 1071 (1139)
+|++ +|||++|.+.-..+.+.|.+..
T Consensus 327 ~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 327 IFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred CCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 4554 8999999999988888887643
No 336
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.13 E-value=4.4e-07 Score=95.52 Aligned_cols=82 Identities=24% Similarity=0.270 Sum_probs=61.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccccC-CccEEE----------ECCcccCCCChHHHhhhceEEccccccccccHHH
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYDP-NEGIIL----------IDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRN 980 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-~~G~I~----------idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIre 980 (1139)
++|+.++|+||||||||||++.|.+.+++ ..+.+. .+|++...++...+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999976 333332 467777777888877765 6788888888887
Q ss_pred HhccCCCcCCHHHHHHHHHH
Q 048639 981 NICYGNEAASEAEIVEVSKK 1000 (1139)
Q Consensus 981 NL~~~~~~~sd~ei~~al~~ 1000 (1139)
| .||. +.+.+.+.++.
T Consensus 83 ~-~yg~---~~~~i~~~l~~ 98 (208)
T 3tau_A 83 N-YYGT---PLEYVEEKLAA 98 (208)
T ss_dssp E-EEEE---EHHHHHHHHHT
T ss_pred c-cCCC---cHHHHHHHHHc
Confidence 7 3553 34555555543
No 337
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.13 E-value=2.3e-07 Score=111.21 Aligned_cols=89 Identities=20% Similarity=0.279 Sum_probs=64.2
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc-EEE-ECCcccCC-------CCh---HHHhhhceEEccccccccc
Q 048639 909 LQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG-IIL-IDGKGIKE-------YNL---RRLRSQIGLVQQEPLLFSC 976 (1139)
Q Consensus 909 l~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G-~I~-idG~di~~-------~~l---~~lR~~i~~V~Qdp~LF~g 976 (1139)
..+++|+.++|+|+||||||||+++|.+.+.|.+| +|. +||.++.. ++. ...++++++++|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 35789999999999999999999999999999887 784 99977642 122 23456789999973
Q ss_pred cHHHHhccCC---C-cCCHHHHHHHHHHcC
Q 048639 977 SIRNNICYGN---E-AASEAEIVEVSKKAN 1002 (1139)
Q Consensus 977 TIreNL~~~~---~-~~sd~ei~~al~~~~ 1002 (1139)
+..+|+.+.. + ....++..++++..+
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 3445554321 1 223456777788766
No 338
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.13 E-value=6.6e-07 Score=100.25 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=56.1
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh----HHH-----hhhceEE-cccc
Q 048639 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL----RRL-----RSQIGLV-QQEP 971 (1139)
Q Consensus 903 vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l----~~l-----R~~i~~V-~Qdp 971 (1139)
+++++||++++|+.++|+|++|+||||++..|.+.+.+.+|+|.+.+.|+..... ..+ +.++.++ +|.+
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 3567888899999999999999999999999999999999999999888865431 334 5668888 5653
No 339
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.12 E-value=7.4e-07 Score=99.82 Aligned_cols=69 Identities=17% Similarity=0.250 Sum_probs=55.3
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCH----HHH-----hcceEEE-ecCC
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDL----KSL-----RKNIGAV-SQEP 342 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~----~~~-----~~~i~~v-~Q~~ 342 (1139)
++++++|++++|++++++|++||||||++..|++.+.+..|+|.+.+.|+..... ..+ +.++.++ +|.+
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 3467888899999999999999999999999999999999999998887754321 233 5678888 6654
No 340
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.12 E-value=8.5e-07 Score=92.58 Aligned_cols=45 Identities=22% Similarity=0.181 Sum_probs=25.1
Q ss_pred ECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 894 NYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 894 ~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
+|+..+..++++||||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 466556668999999999999999999999999999999999876
No 341
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.12 E-value=7.8e-07 Score=93.30 Aligned_cols=61 Identities=20% Similarity=0.240 Sum_probs=39.7
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCC
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPS 343 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~ 343 (1139)
+++++|++++|+|||||||||++++|.+.+.|+.| +.+ +....... ...+..++|++|++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRD 61 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHH
Confidence 46889999999999999999999999999977655 111 11111111 111234778887653
No 342
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.12 E-value=1.7e-07 Score=110.92 Aligned_cols=139 Identities=18% Similarity=0.197 Sum_probs=93.6
Q ss_pred EEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceE
Q 048639 887 EFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGL 966 (1139)
Q Consensus 887 ~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~ 966 (1139)
+++++...|. +..+++++++++++| +.|+||+|+|||||++++.+... .|.+.++|.++.+......++++..
T Consensus 42 ~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 4455555453 224799999999999 99999999999999999999875 7899999999877666666777888
Q ss_pred Eccccc-ccc-ccHHHHhccCCCcC------CHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 048639 967 VQQEPL-LFS-CSIRNNICYGNEAA------SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIART 1038 (1139)
Q Consensus 967 V~Qdp~-LF~-gTIreNL~~~~~~~------sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARA 1038 (1139)
++|+.. .+. -.+.|+++...+.. ..++..+.+.. ++. .|||||+|+..+++|
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~-----LL~---------------~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ-----LLV---------------EMDGFEKDTAIVVMA 174 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH-----HHH---------------HGGGCCSSCCCEEEE
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH-----HHH---------------HhcccccCccEEEEE
Confidence 888864 222 24567775321110 12222222211 111 256777777777777
Q ss_pred hcCCCCEEEeeccccC
Q 048639 1039 LLKRPAIMLLDEATSA 1054 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~ 1054 (1139)
...+|++ ||||.-.
T Consensus 175 atn~p~~--LD~aLlr 188 (499)
T 2dhr_A 175 ATNRPDI--LDPALLR 188 (499)
T ss_dssp CCSCGGG--SCTTTSS
T ss_pred ecCChhh--cCccccc
Confidence 7777776 6777653
No 343
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=1e-06 Score=91.97 Aligned_cols=45 Identities=24% Similarity=0.138 Sum_probs=25.2
Q ss_pred ECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 265 AYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 265 ~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+|+.++..++++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 455555678999999999999999999999999999999999876
No 344
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.07 E-value=2e-06 Score=97.19 Aligned_cols=66 Identities=21% Similarity=0.253 Sum_probs=46.5
Q ss_pred cccceeE--EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEE-EECCccCCCCCHHHHhcceEEEecCC
Q 048639 274 ILKGFSL--SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDI-LIDSLNIKDLDLKSLRKNIGAVSQEP 342 (1139)
Q Consensus 274 ~l~~is~--~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i-~~~g~~~~~~~~~~~~~~i~~v~Q~~ 342 (1139)
.|+.+-= -+++|+++.|.||+|||||||+..+++...+..|.+ ++++.+..+ . .+.+++++.+|+.
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~--~-~ra~rlgv~~~~l 116 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD--P-VYAKNLGVDLKSL 116 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC--H-HHHHHHTCCGGGC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc--h-HHHHHcCCchhhh
Confidence 4554422 488999999999999999999999999988877865 566543221 1 2344566665543
No 345
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.04 E-value=4.9e-06 Score=104.52 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=52.7
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHhHHHHHHHHHHHcC-CCeEEE-EecCccchhc
Q 048639 393 GVQLSGGQKQRIAIARAIVKNPPILLLDEATS-ALDSESEKLVQEALERAMQ-GRTVIL-IAHRMSTIVN 459 (1139)
Q Consensus 393 g~~LSgGqkqRi~lARal~~~~~illlDEpts-~LD~~~~~~i~~~l~~~~~-~~tvi~-itH~~~~~~~ 459 (1139)
..-+|+|+.+|..++++++.+++++|+|||.. +||.+....+.+.+..... .+++++ .||+.+.+..
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 45688999999999999999999999999997 8998776666666655554 456666 4898776643
No 346
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.04 E-value=1.1e-06 Score=90.07 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=48.5
Q ss_pred cceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCc--cCCCCCH----HHHhcceEEEecCCC
Q 048639 276 KGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL--NIKDLDL----KSLRKNIGAVSQEPS 343 (1139)
Q Consensus 276 ~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~--~~~~~~~----~~~~~~i~~v~Q~~~ 343 (1139)
+++++++.+| +++|+||||||||||+++|.+.+.+..|...-.+. ++-.... ...+..|.+++|+|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 7899999999 99999999999999999999998887765433221 1111110 012457999999863
No 347
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.02 E-value=4e-07 Score=97.45 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=50.6
Q ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCC------ChHH----HhhhceEEcccccccc
Q 048639 908 SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY------NLRR----LRSQIGLVQQEPLLFS 975 (1139)
Q Consensus 908 sl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~------~l~~----lR~~i~~V~Qdp~LF~ 975 (1139)
+.+.++|+.++|+|++||||||++++|.++ .|+|.++|.|.... .+.. .++++++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 345578999999999999999999999998 78999999886432 2221 2567899999887654
No 348
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.01 E-value=3.8e-06 Score=94.90 Aligned_cols=61 Identities=16% Similarity=0.253 Sum_probs=47.5
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEE-EECCcccCCCChHHHhhhceEEcccccc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII-LIDGKGIKEYNLRRLRSQIGLVQQEPLL 973 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I-~idG~di~~~~l~~lR~~i~~V~Qdp~L 973 (1139)
-+++|+.+.|.||+|||||||+..+.+...+..|.+ +||+.+... ....+++++.+|+..+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~i 118 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLLI 118 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhhh
Confidence 488999999999999999999999999988777765 777764332 2355678887776543
No 349
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.98 E-value=1.2e-06 Score=98.09 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=50.7
Q ss_pred ccccEEEEeEEEECCCCCCccccc--------------ceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 882 IKGRIEFQNIKFNYPSRPEVTVLN--------------NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 882 ~~g~I~~~nvsf~Y~~~~~~~vL~--------------~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
.+|.|.|+||++.||. +..+|+ |+++.|.+||+++|+|++|+|||||++.|.|+..
T Consensus 130 ~~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 130 ARNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HTTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 4678999999999985 356888 8999999999999999999999999999999863
No 350
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.94 E-value=1.2e-05 Score=92.04 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=48.4
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHhHHHHHHHHHHHcCCCeEEEEe--cCc
Q 048639 393 GVQLSGGQKQRIAIARAIVKNPPILLLD-EATSALDSESEKLVQEALERAMQGRTVILIA--HRM 454 (1139)
Q Consensus 393 g~~LSgGqkqRi~lARal~~~~~illlD-Epts~LD~~~~~~i~~~l~~~~~~~tvi~it--H~~ 454 (1139)
...+|+|++|++. +.+...++-++++| ++.+++|.+....+.+.+.....++.+|+|. ||+
T Consensus 229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl 292 (357)
T 2e87_A 229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDV 292 (357)
T ss_dssp STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTT
T ss_pred hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECccc
Confidence 4468999999887 66666788889999 9999999988777777776655578888888 554
No 351
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.91 E-value=2.8e-06 Score=89.04 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=42.7
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccch---hccCEEEEEe
Q 048639 396 LSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTI---VNADMIAVVE 467 (1139)
Q Consensus 396 LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~---~~~d~i~~l~ 467 (1139)
.+.|+.+|..+++.++.+|+.+..+ .+.++|...+.+.+.+... .+.++|+-+|.+... ..||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 4688999999999998888644333 3345666655555555432 356888888877553 4599998885
No 352
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.91 E-value=1.3e-05 Score=100.75 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=51.3
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEeecccc-CCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEE-EecCchhhhc
Q 048639 1024 QLSGGQKQRIAIARTLLKRPAIMLLDEATS-ALDAESERVIVSALEALNPKSSSCGELASRTTQIT-VAHRLATVIN 1098 (1139)
Q Consensus 1024 ~LSgGQrQrlalARALlr~p~ILlLDEaTS-~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~-IaHrl~ti~~ 1098 (1139)
-+|.|+.+|..++++++.+++++|+|||.. ++|.+.-..+.+.+.+.. .+..++++ .||..+.+..
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~---------~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR---------PDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC---------TTCEEEEEESCSCCHHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC---------CCceEEEEeccccHHHHHH
Confidence 578999999999999999999999999997 899877666666665544 33444555 5898776654
No 353
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.86 E-value=1.5e-05 Score=89.34 Aligned_cols=127 Identities=13% Similarity=0.193 Sum_probs=79.2
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHH
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNI 353 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni 353 (1139)
-|+.+.--+.+|+++.|.|++|+|||||+.-++.......+ .+.|++=+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-------------------~Vl~fSlE------------ 83 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-------------------GVAVFSLE------------ 83 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------------EEEEEESS------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------eEEEEeCC------------
Confidence 57776667999999999999999999999988866533222 23443322
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHH
Q 048639 354 KVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESEKL 433 (1139)
Q Consensus 354 ~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~ 433 (1139)
.+.+++...+... ...++. + .+- . ..||++++||++.|...+.++++++.|+|...+| .
T Consensus 84 ------ms~~ql~~Rlls~-----~~~v~~--~-~l~-~-g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~-----~ 142 (338)
T 4a1f_A 84 ------MSAEQLALRALSD-----LTSINM--H-DLE-S-GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE-----Q 142 (338)
T ss_dssp ------SCHHHHHHHHHHH-----HHCCCH--H-HHH-H-TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-----H
T ss_pred ------CCHHHHHHHHHHH-----hhCCCH--H-HHh-c-CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-----H
Confidence 2233333222111 111110 0 010 1 2699999999999999999999999999865433 3
Q ss_pred HHHHHHHH--cC-CCeEEEEec
Q 048639 434 VQEALERA--MQ-GRTVILIAH 452 (1139)
Q Consensus 434 i~~~l~~~--~~-~~tvi~itH 452 (1139)
+...++.+ .. +..+|+|-|
T Consensus 143 i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 143 IRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEec
Confidence 33333332 12 567777755
No 354
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.85 E-value=2.1e-05 Score=90.00 Aligned_cols=123 Identities=20% Similarity=0.193 Sum_probs=77.3
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHH
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEI 994 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei 994 (1139)
-+++++|++|+|||||++.|.+.. + .+++.+..+.+ ..++.++++..
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~-~-----~~~~~~~~t~~-----~~~~~~~~~~~---------------------- 214 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK-P-----EIASYPFTTRG-----INVGQFEDGYF---------------------- 214 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC-C-----EEECCTTCSSC-----EEEEEEEETTE----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-C-----ccCCCCCeeec-----eeEEEEEecCc----------------------
Confidence 479999999999999999998864 2 22222222111 11222222210
Q ss_pred HHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEee-ccccCCCHHHHHHHHHHHHhhCCC
Q 048639 995 VEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLD-EATSALDAESERVIVSALEALNPK 1073 (1139)
Q Consensus 995 ~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLD-EaTS~LD~~te~~I~~~l~~~~~~ 1073 (1139)
...+.| .|+-.+. ....+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+..
T Consensus 215 -----~~~l~D----t~G~~~~----~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-- 278 (357)
T 2e87_A 215 -----RYQIID----TPGLLDR----PISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-- 278 (357)
T ss_dssp -----EEEEEE----CTTTSSS----CSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--
T ss_pred -----eEEEEe----CCCcccc----chhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--
Confidence 011111 1322221 22358999999887 66666788899999 9999999998888888777654
Q ss_pred CCCccccCCCeEEEEEe--cCch
Q 048639 1074 SSSCGELASRTTQITVA--HRLA 1094 (1139)
Q Consensus 1074 ~~~~~~~~~~tTvI~Ia--Hrl~ 1094 (1139)
.+.. +|+|. |++.
T Consensus 279 -------~~~p-iilV~NK~Dl~ 293 (357)
T 2e87_A 279 -------KDLP-FLVVINKIDVA 293 (357)
T ss_dssp -------TTSC-EEEEECCTTTC
T ss_pred -------CCCC-EEEEEECcccC
Confidence 2334 78888 7664
No 355
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.85 E-value=8.7e-06 Score=85.29 Aligned_cols=126 Identities=17% Similarity=0.233 Sum_probs=73.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCHHHHH
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASEAEIV 995 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd~ei~ 995 (1139)
.+||+|++||||||+.+.|.++ |...+|+ +.+.+.+. ..+. +.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~--------d~~~~~~~-----------------~~~~-----~~~~ 48 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA--------DVVAREVV-----------------AKDS-----PLLS 48 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH--------HHHHHHTT-----------------CSSC-----HHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch--------HHHHHHHc-----------------cCCh-----HHHH
Confidence 5999999999999999999983 5555654 22221111 0010 1122
Q ss_pred HHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCC
Q 048639 996 EVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSS 1075 (1139)
Q Consensus 996 ~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~ 1075 (1139)
+..+..|. . .-.+.|+.+|..+++.+..+|..+-.+ ++.+++...+.+.+.++..
T Consensus 49 ~i~~~~g~-----------------~-~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~----- 103 (206)
T 1jjv_A 49 KIVEHFGA-----------------Q-ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ----- 103 (206)
T ss_dssp HHHHHHCT-----------------T-CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHhCH-----------------H-HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-----
Confidence 22222111 1 113678999999999998888654433 3456777777777766532
Q ss_pred CccccCCCeEEEEEecCchhh---hcCCEEEEEeC
Q 048639 1076 SCGELASRTTQITVAHRLATV---INSDVIVVMDK 1107 (1139)
Q Consensus 1076 ~~~~~~~~tTvI~IaHrl~ti---~~~DrI~vl~~ 1107 (1139)
.+. ++|+-+|.+... ..||++++++.
T Consensus 104 -----~~~-~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 104 -----TAP-YTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp -----CSS-EEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred -----CCC-EEEEEechhhhcCcHhhCCEEEEEEC
Confidence 223 477778877654 45999999863
No 356
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.84 E-value=3.3e-06 Score=88.74 Aligned_cols=29 Identities=34% Similarity=0.460 Sum_probs=27.7
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccCC
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYDP 311 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~~ 311 (1139)
++|++++|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999987
No 357
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.81 E-value=2.9e-06 Score=94.96 Aligned_cols=56 Identities=14% Similarity=0.207 Sum_probs=50.1
Q ss_pred CCccEEEEeEEEECCCCCCCcccc--------------ceeEEecCCCEEEEECCCCCcHHHHHHHHHhccC
Q 048639 253 IDGNIDIRDVCFAYPSRPDQLILK--------------GFSLSIPAGKMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 253 ~~~~i~~~~v~~~y~~~~~~~~l~--------------~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
..+.+.|+|+++.||. ++..|+ |+++.+.+|+.++|+||+|+|||||++.|.+...
T Consensus 130 ~~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 130 ARNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HTTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 3467999999999985 456888 9999999999999999999999999999999763
No 358
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.80 E-value=1.3e-05 Score=90.38 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=26.4
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
-+++|+++.|.||+|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58899999999999999999999988754
No 359
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.69 E-value=1.7e-05 Score=80.69 Aligned_cols=54 Identities=22% Similarity=0.275 Sum_probs=42.1
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhh-hceEEcccc
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRS-QIGLVQQEP 971 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~-~i~~V~Qdp 971 (1139)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+-++.. ...+++ .+++.+|++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~ 60 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDD 60 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCcc
Confidence 468999999999999999999999876 889999877753 222333 467777653
No 360
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.69 E-value=2.4e-06 Score=102.42 Aligned_cols=44 Identities=27% Similarity=0.249 Sum_probs=39.1
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccCCCcc-EEE-ECCccC
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG-DIL-IDSLNI 323 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G-~i~-~~g~~~ 323 (1139)
..+++|++++|+|+||||||||+++|+|.+.|++| ++. +||.++
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 36789999999999999999999999999999987 785 888654
No 361
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.68 E-value=1.2e-05 Score=83.80 Aligned_cols=47 Identities=11% Similarity=0.154 Sum_probs=40.0
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCC
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLD 327 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~ 327 (1139)
..++|++++|+|+|||||||+++.|.+.+++..|.|.+.+.|....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 35689999999999999999999999999988999988776654433
No 362
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.67 E-value=5.8e-05 Score=87.26 Aligned_cols=144 Identities=19% Similarity=0.184 Sum_probs=86.0
Q ss_pred EEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHH-Hhhhc
Q 048639 886 IEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRR-LRSQI 964 (1139)
Q Consensus 886 I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~-lR~~i 964 (1139)
+..++++..|... . ++++|+ +|+.++++|++||||||++..|.+.+.+..|+|.+.+.|+......+ |+..
T Consensus 77 ~v~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~- 148 (425)
T 2ffh_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL- 148 (425)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-
Confidence 3345566667422 1 567787 89999999999999999999999999999999999888876543322 2210
Q ss_pred eEEccccccccccHHHHhccC--CCcCCHHHH-HHHHHHcCchHHHhhCCCCccccccCCCCCCC---hHHHHHHHHHHH
Q 048639 965 GLVQQEPLLFSCSIRNNICYG--NEAASEAEI-VEVSKKANIHDFISSLPDGYDTVVGEKGCQLS---GGQKQRIAIART 1038 (1139)
Q Consensus 965 ~~V~Qdp~LF~gTIreNL~~~--~~~~sd~ei-~~al~~~~l~~~i~~lp~gldt~v~e~G~~LS---gGQrQrlalARA 1038 (1139)
+ -+.|+++. .+..+..++ .++++.+. .+++|..+-+.+..++ .-..++..++++
T Consensus 149 ~------------~~~gv~v~~~~~~~~p~~i~~~~l~~~~--------~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~ 208 (425)
T 2ffh_A 149 G------------EKVGVPVLEVMDGESPESIRRRVEEKAR--------LEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (425)
T ss_dssp H------------HHHTCCEEECCTTCCHHHHHHHHHHHHH--------HTTCSEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred c------------ccCCccEEecCCCCCHHHHHHHHHHHHH--------HCCCCEEEEcCCCcccccHHHHHHHHHhhhc
Confidence 0 01122211 111233344 33333320 1345544433322232 345677788888
Q ss_pred hcCCCCEEEeeccccCCCHH
Q 048639 1039 LLKRPAIMLLDEATSALDAE 1058 (1139)
Q Consensus 1039 Llr~p~ILlLDEaTS~LD~~ 1058 (1139)
+.-++-+|++| ++++.|..
T Consensus 209 ~~pd~vlLVvD-a~tgq~av 227 (425)
T 2ffh_A 209 LGPDEVLLVLD-AMTGQEAL 227 (425)
T ss_dssp HCCSEEEEEEE-GGGTTHHH
T ss_pred cCCceEEEEEe-ccchHHHH
Confidence 86666788888 45555443
No 363
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.67 E-value=1.4e-05 Score=83.49 Aligned_cols=48 Identities=13% Similarity=0.031 Sum_probs=41.6
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCCh
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNL 957 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l 957 (1139)
..++|+.++|+|++||||||+++.|.+++++..|.|.+.+.|....+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~ 65 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER 65 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH
Confidence 357899999999999999999999999998889999888777655544
No 364
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.66 E-value=0.00011 Score=84.97 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=90.4
Q ss_pred EeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHH-H---hcc-
Q 048639 260 RDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKS-L---RKN- 334 (1139)
Q Consensus 260 ~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~-~---~~~- 334 (1139)
+++++.|+.. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|.......+ + ++.
T Consensus 80 ~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~ 152 (425)
T 2ffh_A 80 EALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKV 152 (425)
T ss_dssp HHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccC
Confidence 3455556422 1 567777 89999999999999999999999999999999999877764422211 1 111
Q ss_pred -eEEEecCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhC-CCCCCccccccCCCC---ChHHHHHHHHHHH
Q 048639 335 -IGAVSQEPSLFTGSLMDNIKVGNMDADDEQIYNASMMANAHSFISQL-PDQYSTELGQRGVQL---SGGQKQRIAIARA 409 (1139)
Q Consensus 335 -i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l-~~g~~t~i~~~g~~L---SgGqkqRi~lARa 409 (1139)
+-+++.. +..+..++.. +.++.+ ..++|..+=+.+..+ ..-..+...++++
T Consensus 153 gv~v~~~~----------------~~~~p~~i~~--------~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~ 208 (425)
T 2ffh_A 153 GVPVLEVM----------------DGESPESIRR--------RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (425)
T ss_dssp TCCEEECC----------------TTCCHHHHHH--------HHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred CccEEecC----------------CCCCHHHHHH--------HHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhc
Confidence 1111111 1122233311 122222 235665443333233 2346677788888
Q ss_pred HccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEec
Q 048639 410 IVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAH 452 (1139)
Q Consensus 410 l~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 452 (1139)
+..++-++++| ++++.|.... + +.+... -+.+-|++|+
T Consensus 209 ~~pd~vlLVvD-a~tgq~av~~--a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 209 LGPDEVLLVLD-AMTGQEALSV--A-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HCCSEEEEEEE-GGGTTHHHHH--H-HHHHHH-TCCCEEEEES
T ss_pred cCCceEEEEEe-ccchHHHHHH--H-HHHHhc-CCceEEEEeC
Confidence 87676777787 5566554322 1 222221 2456677776
No 365
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.66 E-value=3.6e-05 Score=86.73 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=31.7
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccc-cC------CccEEEECCc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFY-DP------NEGIILIDGK 950 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~-~p------~~G~I~idG~ 950 (1139)
-+++|+.+.|.||+||||||++..+..-. .| ..+.++|+..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 58999999999999999999998887643 33 2344666654
No 366
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.62 E-value=6.5e-05 Score=86.97 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=32.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCc
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL 321 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~ 321 (1139)
++.+++++|++||||||++..|++.+.+..++|.+-+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 57799999999999999999999999888777766443
No 367
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.57 E-value=1.6e-05 Score=88.50 Aligned_cols=44 Identities=18% Similarity=0.358 Sum_probs=36.0
Q ss_pred ccccceeEEecCCC------EEEEECCCCCcHHHHHHHHHhccC--CCccEE
Q 048639 273 LILKGFSLSIPAGK------MVALVGSSGCGKSTVISLVARFYD--PSNGDI 316 (1139)
Q Consensus 273 ~~l~~is~~i~~g~------~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i 316 (1139)
..|++++..+.+++ ++||+||||||||||+++|.+++. |++|.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v 125 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV 125 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE
Confidence 36777777777766 999999999999999999999987 455553
No 368
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.56 E-value=2.4e-05 Score=83.45 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=46.5
Q ss_pred eeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCC------CHHH----HhcceEEEecCCCCC
Q 048639 278 FSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDL------DLKS----LRKNIGAVSQEPSLF 345 (1139)
Q Consensus 278 is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~------~~~~----~~~~i~~v~Q~~~l~ 345 (1139)
-+.+.++|++++|+|++||||||++++|.|. .|+|.+.+.+.... .... .++.+++++|.+.++
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~ 86 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTL 86 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHH
Confidence 3445679999999999999999999999998 78899988765321 1111 134567777765443
No 369
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.54 E-value=1.8e-05 Score=88.16 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=37.6
Q ss_pred ccccceeEEEeCCc------EEEEEcCCCCCHHHHHHHHhcccc--CCccEEEE
Q 048639 902 TVLNNFSLQIEPGL------KVALVGPSGAGKSSVLALLLRFYD--PNEGIILI 947 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge------~vaIvG~sGSGKSTL~~lL~rl~~--p~~G~I~i 947 (1139)
+.|++++..+.+++ .+||+|+|||||||+++.|.++++ |.+|.+.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 46777887887776 899999999999999999999987 45565433
No 370
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.54 E-value=0.00024 Score=81.92 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=32.7
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHc----CCCeEEEEecCccc
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAM----QGRTVILIAHRMST 456 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~~~~ 456 (1139)
.+|.++++||+... |......+.+.+.... .+.++|++||+.+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45889999999876 8777777766664432 36688889998754
No 371
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.48 E-value=4.3e-05 Score=77.62 Aligned_cols=38 Identities=32% Similarity=0.365 Sum_probs=33.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCC
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIK 324 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~ 324 (1139)
.+|++++|+|++||||||+++.|.+.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999976 88899886654
No 372
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.47 E-value=0.00018 Score=80.70 Aligned_cols=104 Identities=19% Similarity=0.278 Sum_probs=68.0
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHH
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNN 981 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreN 981 (1139)
+.|+.+.--+++|+.+.|.||+|+||||++.-++.-.....+.+.+ |+.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~--------------------------fSl----- 82 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV--------------------------FSL----- 82 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE--------------------------EES-----
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE--------------------------EeC-----
Confidence 4577776679999999999999999999998887654322222222 111
Q ss_pred hccCCCcCCHHHHHHH----HHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEeeccccCCC
Q 048639 982 ICYGNEAASEAEIVEV----SKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLLKRPAIMLLDEATSALD 1056 (1139)
Q Consensus 982 L~~~~~~~sd~ei~~a----l~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALlr~p~ILlLDEaTS~LD 1056 (1139)
+.+.+++..- ...+.+..+.. | .||.+++||++.|...+.++++.|.|+|+.++|
T Consensus 83 ------Ems~~ql~~Rlls~~~~v~~~~l~~-------------g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 83 ------EMSAEQLALRALSDLTSINMHDLES-------------G-RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ------SSCHHHHHHHHHHHHHCCCHHHHHH-------------T-CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ------CCCHHHHHHHHHHHhhCCCHHHHhc-------------C-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 1233333222 12222222211 1 588999999999988888889999998876544
No 373
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.45 E-value=0.0001 Score=85.33 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=36.3
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccC
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK 953 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~ 953 (1139)
++..++++|++||||||++..|.+.+.+..++|.+-+.|+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 47899999999999999999999999988889988666654
No 374
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.44 E-value=4.8e-05 Score=89.34 Aligned_cols=68 Identities=15% Similarity=0.269 Sum_probs=44.9
Q ss_pred CCCEEEeeccccCCCH-HHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCc-hhhhc-CCEEEE-EeCCEEEEecChh
Q 048639 1042 RPAIMLLDEATSALDA-ESERVIVSALEALNPKSSSCGELASRTTQITVAHRL-ATVIN-SDVIVV-MDKGEVVEMGSHS 1117 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~-~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl-~ti~~-~DrI~v-l~~G~ive~G~~~ 1117 (1139)
++++|++||+..-.+. .+...+...+.+.. ..++.+|+.+|+. ..+.. .+++.- ++.|.+++.+.|.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~---------~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELH---------DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHH---------TTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHH---------HCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 8999999999987765 67777878877654 2334488889984 33322 233332 4667777777664
Q ss_pred H
Q 048639 1118 T 1118 (1139)
Q Consensus 1118 e 1118 (1139)
.
T Consensus 265 ~ 265 (440)
T 2z4s_A 265 E 265 (440)
T ss_dssp H
T ss_pred H
Confidence 3
No 375
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.42 E-value=2.2e-05 Score=80.10 Aligned_cols=41 Identities=37% Similarity=0.489 Sum_probs=34.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccccCCcc--EEEECCcccC
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYDPNEG--IILIDGKGIK 953 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G--~I~idG~di~ 953 (1139)
++|+.++|+|++||||||++++|.+.+.+ .| .|.+||..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998866 57 6777876554
No 376
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.41 E-value=3e-06 Score=88.46 Aligned_cols=32 Identities=34% Similarity=0.576 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKG 951 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~d 951 (1139)
..|+|+|++||||||+.+.|.+. |-..+|.-+
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 57999999999999999999985 667776543
No 377
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.41 E-value=0.00011 Score=83.46 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=26.1
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhc
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999999885
No 378
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.38 E-value=0.00037 Score=80.32 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=25.8
Q ss_pred CCc--EEEEEcCCCCCHHHHHHHHhccccCC
Q 048639 913 PGL--KVALVGPSGAGKSSVLALLLRFYDPN 941 (1139)
Q Consensus 913 ~Ge--~vaIvG~sGSGKSTL~~lL~rl~~p~ 941 (1139)
++. .+.|+||+|+||||+++.+.+...+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~ 71 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDK 71 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhh
Confidence 456 89999999999999999999988765
No 379
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.36 E-value=0.00011 Score=83.18 Aligned_cols=42 Identities=26% Similarity=0.228 Sum_probs=32.1
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccc-cC------CccEEEECCcc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFY-DP------NEGIILIDGKG 951 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~-~p------~~G~I~idG~d 951 (1139)
-+++|+.+.|.||+|||||||+..+..-. .| ..+.++||...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 58899999999999999999999888752 22 23456666543
No 380
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.33 E-value=0.00013 Score=81.67 Aligned_cols=129 Identities=11% Similarity=0.169 Sum_probs=77.0
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDN 352 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~n 352 (1139)
+.|+++.--+++|+++.|.|++|+|||||+.-++...-. .| ..+.|+.=+
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE----------- 105 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE----------- 105 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS-----------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC-----------
Confidence 467777766999999999999999999999888754311 11 134444322
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccC-CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhH
Q 048639 353 IKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRG-VQLSGGQKQRIAIARAIVKNPPILLLDEATSALDSESE 431 (1139)
Q Consensus 353 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g-~~LSgGqkqRi~lARal~~~~~illlDEpts~LD~~~~ 431 (1139)
.+.+++...+... ...++ ... + ..+ ..||++++||++.|...+.++++++.|+|...+
T Consensus 106 -------~s~~~l~~R~~~~-----~~~i~--~~~-l-~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~----- 164 (315)
T 3bh0_A 106 -------MGKKENIKRLIVT-----AGSIN--AQK-I-KAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSV----- 164 (315)
T ss_dssp -------SCHHHHHHHHHHH-----HTTCC--HHH-H-HSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH-----
T ss_pred -------CCHHHHHHHHHHH-----HcCCC--HHH-H-hcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH-----
Confidence 2233333222111 01111 000 0 011 139999999999999999999999999986432
Q ss_pred HHHHHHHHHHc--CCCe--EEEEec
Q 048639 432 KLVQEALERAM--QGRT--VILIAH 452 (1139)
Q Consensus 432 ~~i~~~l~~~~--~~~t--vi~itH 452 (1139)
..+...++.+. .+.. +|+|-|
T Consensus 165 ~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 165 NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 22333333321 2445 666665
No 381
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.32 E-value=0.00091 Score=74.05 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=43.5
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHh----------HHHHHHHHHHHc-----CCCeEEEEecCccchh---
Q 048639 397 SGGQKQRIAIARAIVKNPPILLLDEATSALDSES----------EKLVQEALERAM-----QGRTVILIAHRMSTIV--- 458 (1139)
Q Consensus 397 SgGqkqRi~lARal~~~~~illlDEpts~LD~~~----------~~~i~~~l~~~~-----~~~tvi~itH~~~~~~--- 458 (1139)
+++++.|..++++...+|.++++||+.+.++... ...+...+.... .+..+|.+|++++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3678888888888888999999999988765422 122333343322 1235667788765432
Q ss_pred --ccCEEEEE
Q 048639 459 --NADMIAVV 466 (1139)
Q Consensus 459 --~~d~i~~l 466 (1139)
++++++.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 35555443
No 382
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.31 E-value=0.00032 Score=82.34 Aligned_cols=43 Identities=16% Similarity=0.332 Sum_probs=34.0
Q ss_pred cCCCEEEEeCCCCCCCH-HhHHHHHHHHHHHc-CCCeEEEEecCc
Q 048639 412 KNPPILLLDEATSALDS-ESEKLVQEALERAM-QGRTVILIAHRM 454 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~-~~~~~i~~~l~~~~-~~~tvi~itH~~ 454 (1139)
.+|++|++||+..-.+. .++..+...+..+. .++.+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 38999999999887765 56777778877654 478899999974
No 383
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.28 E-value=0.00085 Score=74.29 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=45.6
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEeeccccCCCHHH----------HHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchh
Q 048639 1026 SGGQKQRIAIARTLLKRPAIMLLDEATSALDAES----------ERVIVSALEALNPKSSSCGELASRTTQITVAHRLAT 1095 (1139)
Q Consensus 1026 SgGQrQrlalARALlr~p~ILlLDEaTS~LD~~t----------e~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~t 1095 (1139)
+++++++-.+++|...+|.+|++||+.+-.+... ...+...+...... ...++..+|..|++.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-----~~~~~v~vi~~tn~~~~ 171 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN-----PDGDRIVVLAATNRPQE 171 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----------CEEEEEEESCGGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc-----CCCCcEEEEeecCChhh
Confidence 3577788888888888999999999988766432 12233444432200 00123557788888654
Q ss_pred h-----hcCCEEEEEe
Q 048639 1096 V-----INSDVIVVMD 1106 (1139)
Q Consensus 1096 i-----~~~DrI~vl~ 1106 (1139)
+ ..+|+++.+.
T Consensus 172 l~~~l~~R~~~~i~~~ 187 (297)
T 3b9p_A 172 LDEAALRRFTKRVYVS 187 (297)
T ss_dssp BCHHHHHHCCEEEECC
T ss_pred CCHHHHhhCCeEEEeC
Confidence 3 2467665553
No 384
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.26 E-value=6.3e-05 Score=90.75 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=43.0
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCc
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL 321 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~ 321 (1139)
.+++++++++ +|+.++|+||+|+|||||+++|++...+..|.|.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 4678888888 89999999999999999999999999999999887763
No 385
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.25 E-value=9.5e-05 Score=83.91 Aligned_cols=42 Identities=24% Similarity=0.356 Sum_probs=37.7
Q ss_pred ccccceeEEEeCCcE--EEEEcCCCCCHHHHHHHHhccccCCcc
Q 048639 902 TVLNNFSLQIEPGLK--VALVGPSGAGKSSVLALLLRFYDPNEG 943 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~--vaIvG~sGSGKSTL~~lL~rl~~p~~G 943 (1139)
.+++.++..|+.|+. +.+.||+|+||||+++++.+...+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 488999999999998 999999999999999999998766544
No 386
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.25 E-value=4.4e-05 Score=96.39 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=39.2
Q ss_pred ceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC
Q 048639 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE 954 (1139)
Q Consensus 906 ~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~ 954 (1139)
..++.+++|+.+.++||+|+|||||++++.+... .+-+.+++-++..
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLT 549 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTT
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhh
Confidence 4567789999999999999999999999999875 4567777777644
No 387
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.25 E-value=5.9e-05 Score=85.63 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=38.0
Q ss_pred ccccceeEEecCCCE--EEEECCCCCcHHHHHHHHHhccCCCcc
Q 048639 273 LILKGFSLSIPAGKM--VALVGSSGCGKSTVISLVARFYDPSNG 314 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~--~~ivG~sGsGKSTll~~l~g~~~~~~G 314 (1139)
.+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 488999999999998 999999999999999999999876554
No 388
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.22 E-value=0.0014 Score=70.04 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=24.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCCCccE
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDPSNGD 315 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~ 315 (1139)
.++|+|++|+|||||++.|+|...+.+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999987766553
No 389
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.20 E-value=0.00031 Score=80.70 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=26.4
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccccCC
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYDPN 941 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~ 941 (1139)
.++..+.|.||+|+|||||++.+.+...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457889999999999999999999987654
No 390
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.20 E-value=0.00014 Score=91.93 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=28.6
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhccccC
Q 048639 909 LQIEPGLKVALVGPSGAGKSSVLALLLRFYDP 940 (1139)
Q Consensus 909 l~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p 940 (1139)
|.+++|+.+.|+||+|||||||+++|.+.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 45789999999999999999999999998643
No 391
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.19 E-value=0.00014 Score=85.61 Aligned_cols=61 Identities=28% Similarity=0.408 Sum_probs=40.4
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc------------cCCccEEEECCcccCCCChHHHhhhceEEcccccccc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFY------------DPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFS 975 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~------------~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~ 975 (1139)
-+++|+|++|+|||||++.|.|.. ++.+|.+.++|.++.-++...+|+..++.+|....|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 479999999999999999999974 3678999999998776666666777777777665553
No 392
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.19 E-value=9.6e-05 Score=76.71 Aligned_cols=58 Identities=26% Similarity=0.411 Sum_probs=39.7
Q ss_pred EEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc----cc----cCCccEEEECCccc
Q 048639 892 KFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLR----FY----DPNEGIILIDGKGI 952 (1139)
Q Consensus 892 sf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r----l~----~p~~G~I~idG~di 952 (1139)
+++|++ -.++++++|+..+++ +|+++|++|+|||||++.+.+ .+ .+..+.+.++|.++
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 456764 236899999998877 699999999999999999986 22 23456777776543
No 393
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.18 E-value=6.3e-05 Score=85.26 Aligned_cols=53 Identities=17% Similarity=0.174 Sum_probs=46.4
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCC
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKE 954 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~ 954 (1139)
.+++++++++++|.+++|+|++|+||||+++.|.+.+.+..|++.+-+.|...
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 47899999999999999999999999999999999998888888876666543
No 394
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.18 E-value=0.0001 Score=81.97 Aligned_cols=143 Identities=14% Similarity=0.108 Sum_probs=73.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEE-CCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCH
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI-DSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADD 362 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~ 362 (1139)
++.+++|+|++|+|||||++.|.|.- +.+ .+.+-. ..++..++++++..-+. +.| .|....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~--~iD-----TpG~~~ 68 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAI--YVD-----TPGLHM 68 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEE--EES-----SSSCCH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEE--EEE-----CcCCCc
Confidence 44589999999999999999999863 211 111100 11234677777643110 111 111110
Q ss_pred HHHHHHHHHhcHHHHHHhCCCCC---Cc--cccccCCCCChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHh-HHHH
Q 048639 363 EQIYNASMMANAHSFISQLPDQY---ST--ELGQRGVQLSGGQKQRIAIARAIV--KNPPILLLDEATSALDSES-EKLV 434 (1139)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~l~~g~---~t--~i~~~g~~LSgGqkqRi~lARal~--~~~~illlDEpts~LD~~~-~~~i 434 (1139)
+...... .++.......+ |. .+-+.. ++|+|++ .+++++. ..|.++++ +-+|... ...+
T Consensus 69 -~~~~~l~----~~~~~~~~~~l~~~D~vl~Vvd~~-~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~ 135 (301)
T 1ega_A 69 -EEKRAIN----RLMNKAASSSIGDVELVIFVVEGT-RWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADL 135 (301)
T ss_dssp -HHHHHHH----HHHTCCTTSCCCCEEEEEEEEETT-CCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHH
T ss_pred -cchhhHH----HHHHHHHHHHHhcCCEEEEEEeCC-CCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHH
Confidence 0111111 01111111111 11 111222 3999987 5566665 67888888 7888876 5566
Q ss_pred HHHHHHHcC--C--CeEEEEecCccch
Q 048639 435 QEALERAMQ--G--RTVILIAHRMSTI 457 (1139)
Q Consensus 435 ~~~l~~~~~--~--~tvi~itH~~~~~ 457 (1139)
.+.+..+.+ + .++.+.+|+-..+
T Consensus 136 ~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 136 LPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp HHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 666665543 2 2444455554444
No 395
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.17 E-value=0.00026 Score=81.41 Aligned_cols=30 Identities=20% Similarity=0.332 Sum_probs=26.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccCCC
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYDPS 312 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~~~ 312 (1139)
.++..+.|.||+|+|||||++.+.+...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 457899999999999999999999987654
No 396
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.16 E-value=0.00051 Score=73.33 Aligned_cols=128 Identities=12% Similarity=0.180 Sum_probs=66.1
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEEccccccc-cccHHHHhccCCCcC
Q 048639 911 IEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLF-SCSIRNNICYGNEAA 989 (1139)
Q Consensus 911 I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF-~gTIreNL~~~~~~~ 989 (1139)
+..|+.+.++|+|||||||++.++..-.....|. ...+.++.|.|... .-++.+|+.-.....
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4579999999999999999877654321111111 13467777777543 235556653211000
Q ss_pred CHHHHHHHHHHcCchHHHhhCCCCccccccCCCC---CCChHHHHHHHHHHHhcCCCCEEEeecccc-CCCHHHHHHHHH
Q 048639 990 SEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGC---QLSGGQKQRIAIARTLLKRPAIMLLDEATS-ALDAESERVIVS 1065 (1139)
Q Consensus 990 sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~---~LSgGQrQrlalARALlr~p~ILlLDEaTS-~LD~~te~~I~~ 1065 (1139)
+ -..++.. ...+......+. --+.|.-.+. .+..+++-+++|+||+-. ++|......+.+
T Consensus 137 ----~---~~~~g~~-------~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~ 200 (235)
T 3llm_A 137 ----P---GKSCGYS-------VRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLR 200 (235)
T ss_dssp ----T---TSSEEEE-------ETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHH
T ss_pred ----c---CceEEEe-------echhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHH
Confidence 0 0000000 000111110111 1244554444 344689999999999976 466665543444
Q ss_pred HHHhh
Q 048639 1066 ALEAL 1070 (1139)
Q Consensus 1066 ~l~~~ 1070 (1139)
.+...
T Consensus 201 ~i~~~ 205 (235)
T 3llm_A 201 DVVQA 205 (235)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 44433
No 397
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.16 E-value=9.1e-05 Score=89.37 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=50.6
Q ss_pred EEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCCChHHHhhhceEE
Q 048639 888 FQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEYNLRRLRSQIGLV 967 (1139)
Q Consensus 888 ~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~~l~~lR~~i~~V 967 (1139)
++++..+|. +..+++++++++ +|+.+.|+||+|+|||||+++|.+...+..|.|.++|.....--....++.++..
T Consensus 86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~ 161 (543)
T 3m6a_A 86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM 161 (543)
T ss_dssp CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC
Confidence 456666663 235788899988 8999999999999999999999999999999999888543221122334566776
Q ss_pred cccc
Q 048639 968 QQEP 971 (1139)
Q Consensus 968 ~Qdp 971 (1139)
+|..
T Consensus 162 ~~~~ 165 (543)
T 3m6a_A 162 PGRI 165 (543)
T ss_dssp --CH
T ss_pred chHH
Confidence 6653
No 398
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.13 E-value=0.00051 Score=76.30 Aligned_cols=151 Identities=19% Similarity=0.133 Sum_probs=77.0
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEE-CCcccCCCChHHHhhhceEEccccccccccHHHHhccCCCcCCH
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILI-DGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNICYGNEAASE 991 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~i-dG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~~~~~~~sd 991 (1139)
++.+|+|+|++|+|||||++.|.+.- +.+ .+.+-. ..++..++++|+..-+ ++.| ++| ...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i--~~iD--TpG---~~~ 68 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQA--IYVD--TPG---LHM 68 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEE--EEES--SSS---CCH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeE--EEEE--CcC---CCc
Confidence 34489999999999999999999852 222 111111 1234567888765321 1111 123 210
Q ss_pred HHHHHHHHHcCchHHHhhCCCCccccc--cCCCCCCChHHHHHHHHHHHhc--CCCCEEEeeccccCCCHHH-HHHHHHH
Q 048639 992 AEIVEVSKKANIHDFISSLPDGYDTVV--GEKGCQLSGGQKQRIAIARTLL--KRPAIMLLDEATSALDAES-ERVIVSA 1066 (1139)
Q Consensus 992 ~ei~~al~~~~l~~~i~~lp~gldt~v--~e~G~~LSgGQrQrlalARALl--r~p~ILlLDEaTS~LD~~t-e~~I~~~ 1066 (1139)
+-...+...-.......+ ...|..+ -+... +|+|++ .+++++. ..|.||++ +-+|... ...+.+.
T Consensus 69 -~~~~~l~~~~~~~~~~~l-~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~ 138 (301)
T 1ega_A 69 -EEKRAINRLMNKAASSSI-GDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPH 138 (301)
T ss_dssp -HHHHHHHHHHTCCTTSCC-CCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHH
T ss_pred -cchhhHHHHHHHHHHHHH-hcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHH
Confidence 111111110000000111 1222211 12223 899987 4556555 67889998 6889876 5556666
Q ss_pred HHhhCCCCCCccccCC-CeEEEEEecCchhhhc
Q 048639 1067 LEALNPKSSSCGELAS-RTTQITVAHRLATVIN 1098 (1139)
Q Consensus 1067 l~~~~~~~~~~~~~~~-~tTvI~IaHrl~ti~~ 1098 (1139)
++++.. ..+ ..++.+.||.-..+..
T Consensus 139 l~~l~~-------~~~~~~~i~iSA~~g~~v~~ 164 (301)
T 1ega_A 139 LQFLAS-------QMNFLDIVPISAETGLNVDT 164 (301)
T ss_dssp HHHHHT-------TSCCSEEEECCTTTTTTHHH
T ss_pred HHHHHH-------hcCcCceEEEECCCCCCHHH
Confidence 665431 012 2346666777665543
No 399
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.12 E-value=0.00011 Score=74.76 Aligned_cols=40 Identities=35% Similarity=0.386 Sum_probs=32.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccCCCcc--EEEECCccC
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYDPSNG--DILIDSLNI 323 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G--~i~~~g~~~ 323 (1139)
++|++++|+|++||||||+++.|.+.+.+ .| .+.+|+..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998866 56 666665443
No 400
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.10 E-value=7.6e-05 Score=84.58 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=43.5
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCc
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL 321 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~ 321 (1139)
.+++++++.+++|.+++|+|++|+|||||++.|++.+.+..|++.+-+.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 4789999999999999999999999999999999999888777766443
No 401
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.10 E-value=0.0022 Score=69.37 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=28.7
Q ss_pred ccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCc
Q 048639 275 LKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSL 321 (1139)
Q Consensus 275 l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~ 321 (1139)
++++++..++| +.|+||+|+|||||++++++.+... -+.+++.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~ 79 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGS 79 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSC
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHH
Confidence 44455555555 8999999999999999999987432 3555543
No 402
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.09 E-value=0.00015 Score=82.22 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=37.1
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCC
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY 955 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~ 955 (1139)
+++.+|+|+|++|||||||++.|.+.+.+.+|+|.|.+.|....
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 34678999999999999999999999988899999888776643
No 403
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.06 E-value=0.00024 Score=71.72 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDP 311 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~ 311 (1139)
.|++++|+|++||||||+++.|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999999998754
No 404
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.05 E-value=0.00016 Score=75.50 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=45.5
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccC-CccEE----------EECCcccCCCChHHHhhhceEEccccccccccH
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDP-NEGII----------LIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSI 978 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p-~~G~I----------~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTI 978 (1139)
+..+|..++|+|+|||||||+++.|...++. ..+.+ .+||.+..-++.+.+++.+ .|..+++.+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~ 84 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL---KEGQFLEFDKY 84 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHH---HTTCEEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHH---HcCCCEEeHHh
Confidence 4568999999999999999999999987742 12222 2467777666777766542 34444444444
Q ss_pred HHH
Q 048639 979 RNN 981 (1139)
Q Consensus 979 reN 981 (1139)
..|
T Consensus 85 ~~~ 87 (204)
T 2qor_A 85 ANN 87 (204)
T ss_dssp TTE
T ss_pred CCC
Confidence 344
No 405
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.03 E-value=0.00025 Score=75.37 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=31.9
Q ss_pred ccceeEEec---CCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEE
Q 048639 275 LKGFSLSIP---AGKMVALVGSSGCGKSTVISLVARFYDPSNGDILI 318 (1139)
Q Consensus 275 l~~is~~i~---~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~ 318 (1139)
|.++|+.+. +|.+++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 556666665 8999999999999999999999999988 666654
No 406
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.03 E-value=0.0003 Score=82.71 Aligned_cols=59 Identities=24% Similarity=0.364 Sum_probs=37.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhccC------------CCccEEEECCccCCCCCHHHHhcceEEEecCCCCC
Q 048639 287 MVALVGSSGCGKSTVISLVARFYD------------PSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLF 345 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~------------~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 345 (1139)
.++|+|++|+|||||++.|+|... |.+|.+.++|.++.-++....++..++.+|....|
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~ 252 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKY 252 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCS
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHH
Confidence 799999999999999999999853 67899999998664444433344445554544443
No 407
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.00 E-value=0.00033 Score=74.47 Aligned_cols=46 Identities=17% Similarity=0.301 Sum_probs=33.4
Q ss_pred ccceeEEEe---CCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCc
Q 048639 904 LNNFSLQIE---PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGK 950 (1139)
Q Consensus 904 L~~vsl~I~---~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~ 950 (1139)
|.++|+.+. +|..|.|.|++||||||+++.|...+.+ .+.+.....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~ 61 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTRE 61 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecC
Confidence 556666665 8999999999999999999999999987 667655443
No 408
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.98 E-value=0.00015 Score=76.05 Aligned_cols=44 Identities=30% Similarity=0.376 Sum_probs=38.5
Q ss_pred EEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc--EEEECCccc
Q 048639 909 LQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG--IILIDGKGI 952 (1139)
Q Consensus 909 l~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G--~I~idG~di 952 (1139)
+.+++|..+.|+|++||||||+++.|.+.+.|..| .+.+||-++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45778999999999999999999999999988888 888886443
No 409
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.97 E-value=0.00015 Score=76.22 Aligned_cols=42 Identities=24% Similarity=0.185 Sum_probs=37.3
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccCCCcc--EEEECCc
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNG--DILIDSL 321 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G--~i~~~g~ 321 (1139)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.++|.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 45778999999999999999999999999988888 8888753
No 410
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.97 E-value=0.00029 Score=71.18 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECC
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDG 949 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG 949 (1139)
.|+.++|+|++||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 66765
No 411
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.96 E-value=0.00041 Score=71.31 Aligned_cols=48 Identities=27% Similarity=0.414 Sum_probs=28.4
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc----cc----cCCccEEEECCcc
Q 048639 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLR----FY----DPNEGIILIDGKG 951 (1139)
Q Consensus 903 vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r----l~----~p~~G~I~idG~d 951 (1139)
+++++|+..++. +|+++|++|+|||||++.+.+ .+ .+..+.+.++|..
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 68 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK 68 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEE
Confidence 789999998877 899999999999999999987 22 2334566666643
No 412
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.96 E-value=0.0018 Score=68.95 Aligned_cols=127 Identities=17% Similarity=0.182 Sum_probs=67.2
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCC
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFT-GSLMDNIKVGNMDA 360 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ti~~ni~~g~~~~ 360 (1139)
+.+|+.++++||+||||||++.+++.......|. ...+.++.|.|.... .++.+|+.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4578999999999999999888765432111111 124677777775432 24555543211000
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCCCCc----ccccc---CCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHhHH
Q 048639 361 DDEQIYNASMMANAHSFISQLPDQYST----ELGQR---GVQLSGGQKQRIAIARAIVKNPPILLLDEATS-ALDSESEK 432 (1139)
Q Consensus 361 ~~~~~~~~~~~~~~~~~i~~l~~g~~t----~i~~~---g~~LSgGqkqRi~lARal~~~~~illlDEpts-~LD~~~~~ 432 (1139)
+ ....|+.. ..... ..--+.|+-.+.. +.-+.+-+++++||+=. ++|.....
T Consensus 137 -----------------~-~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 137 -----------------P-GKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp -----------------T-TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred -----------------c-CceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHH
Confidence 0 00001100 00000 1113456665553 34689999999999976 46666553
Q ss_pred HHHHHHHHHcCC
Q 048639 433 LVQEALERAMQG 444 (1139)
Q Consensus 433 ~i~~~l~~~~~~ 444 (1139)
...+.+.....+
T Consensus 197 ~~l~~i~~~~~~ 208 (235)
T 3llm_A 197 VVLRDVVQAYPE 208 (235)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHhhCCC
Confidence 344444343333
No 413
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.93 E-value=0.00012 Score=77.62 Aligned_cols=70 Identities=26% Similarity=0.338 Sum_probs=46.2
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc---cccCCccEE--------EECCcccCCCC-hHHHhhhceEEc------ccccccc
Q 048639 914 GLKVALVGPSGAGKSSVLALLLR---FYDPNEGII--------LIDGKGIKEYN-LRRLRSQIGLVQ------QEPLLFS 975 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~r---l~~p~~G~I--------~idG~di~~~~-l~~lR~~i~~V~------Qdp~LF~ 975 (1139)
.-.++|+||+||||||+.+.|.+ +.-.+.|.+ .-.|+|..+.. +..+-+.+.+.. |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 35899999999999999999984 433455655 23566665542 445666666665 4445555
Q ss_pred ccHHHHhc
Q 048639 976 CSIRNNIC 983 (1139)
Q Consensus 976 gTIreNL~ 983 (1139)
..|.+||.
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 56655553
No 414
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.92 E-value=0.0024 Score=68.19 Aligned_cols=28 Identities=36% Similarity=0.452 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccCCcc
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDPNEG 943 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p~~G 943 (1139)
+|+|+|++|+|||||++.|+|-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6999999999999999999986655444
No 415
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.92 E-value=0.00025 Score=80.47 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=35.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI 323 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~ 323 (1139)
++.+++|+|++|||||||++.|.|.+.+.+|+|.+.+.|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 5679999999999999999999999999889888766554
No 416
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.88 E-value=0.00055 Score=69.09 Aligned_cols=27 Identities=41% Similarity=0.512 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
++|.+|+|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999999864
No 417
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.87 E-value=0.00025 Score=73.58 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=31.6
Q ss_pred EEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHh
Q 048639 263 CFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 263 ~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++|++ -.++++++|++.+++ .++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 456664 246899999998887 589999999999999999986
No 418
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.86 E-value=0.0013 Score=73.86 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=24.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDPS 312 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~~ 312 (1139)
++..+.|.||+|+|||||++.+.+.+.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35689999999999999999999877543
No 419
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.85 E-value=0.00059 Score=67.20 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=25.4
Q ss_pred cceeEEecCCCEEEEECCCCCcHHHHHHHHHh
Q 048639 276 KGFSLSIPAGKMVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 276 ~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g 307 (1139)
++.++++.+| +++|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455666655 999999999999999999873
No 420
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.85 E-value=0.00026 Score=73.85 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=26.4
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHhccC
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
..+|.+++|+|||||||||+.+.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999998874
No 421
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.83 E-value=0.00012 Score=77.69 Aligned_cols=70 Identities=20% Similarity=0.217 Sum_probs=43.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHHh---ccCCCccEEE--------ECCccCCCCC-HHHHhcceEEEec------CCCCCc
Q 048639 285 GKMVALVGSSGCGKSTVISLVAR---FYDPSNGDIL--------IDSLNIKDLD-LKSLRKNIGAVSQ------EPSLFT 346 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g---~~~~~~G~i~--------~~g~~~~~~~-~~~~~~~i~~v~Q------~~~l~~ 346 (1139)
.-+++|.||+||||||+.+.|+. +...+.|.++ -.|.++.+.. ...+...+.+.++ ..+|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 45899999999999999999984 4344555552 2455544332 3345556666663 334444
Q ss_pred ccHHHHHh
Q 048639 347 GSLMDNIK 354 (1139)
Q Consensus 347 ~ti~~ni~ 354 (1139)
..|.++|.
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 45555554
No 422
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.82 E-value=0.0046 Score=69.97 Aligned_cols=37 Identities=30% Similarity=0.436 Sum_probs=30.1
Q ss_pred ccccceeEE---ecCCCEEEEECCCCCcHHHHHHHHHhccC
Q 048639 273 LILKGFSLS---IPAGKMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 273 ~~l~~is~~---i~~g~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
+.|+.+ +. +++|+++.|.|++|||||||+..++....
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356665 33 88999999999999999999988876543
No 423
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.81 E-value=0.0012 Score=68.49 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=23.9
Q ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Q 048639 286 KMVALVGSSGCGKSTVISLVARFYDPS 312 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~~~~ 312 (1139)
..+.|.||+|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999876543
No 424
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.78 E-value=0.0015 Score=73.43 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccC
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFYDP 940 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~~p 940 (1139)
+..+.|.||+|+|||||++++.+...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 467999999999999999999987654
No 425
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.78 E-value=0.0028 Score=70.31 Aligned_cols=38 Identities=26% Similarity=0.424 Sum_probs=30.4
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEEC
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID 319 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~ 319 (1139)
+.++++..+.|.||+|+|||||++++++... .+-+.++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 3467889999999999999999999999863 3444443
No 426
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.77 E-value=0.0034 Score=68.92 Aligned_cols=28 Identities=32% Similarity=0.357 Sum_probs=24.8
Q ss_pred ecCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 282 IPAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 282 i~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
++++.-+.|.||+|+|||||++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999999875
No 427
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.75 E-value=0.00013 Score=75.89 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=38.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc------ccCCccEEEECCc--ccCCCCh--------HHHhhhceEEccccccccccHH
Q 048639 916 KVALVGPSGAGKSSVLALLLRF------YDPNEGIILIDGK--GIKEYNL--------RRLRSQIGLVQQEPLLFSCSIR 979 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl------~~p~~G~I~idG~--di~~~~l--------~~lR~~i~~V~Qdp~LF~gTIr 979 (1139)
.|+|+|++||||||+++.|.+. .+|..|...++.. |-...+. ..++.....+.|+.++++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 6899999999999999999983 4444443322211 1100110 0123334566777788888888
Q ss_pred HHhcc
Q 048639 980 NNICY 984 (1139)
Q Consensus 980 eNL~~ 984 (1139)
+|+.+
T Consensus 82 ~~~~~ 86 (205)
T 2jaq_A 82 EDPIF 86 (205)
T ss_dssp THHHH
T ss_pred hhHHH
Confidence 87765
No 428
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.74 E-value=0.00083 Score=75.08 Aligned_cols=36 Identities=14% Similarity=0.105 Sum_probs=31.1
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
+.|+.+.--+++|+.+.|.|++|+||||++.-+..-
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 467777767999999999999999999998877643
No 429
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.67 E-value=0.00095 Score=68.54 Aligned_cols=33 Identities=21% Similarity=0.447 Sum_probs=20.9
Q ss_pred cccceeEEecCCCEEEEECCCCCcHHHHHHHHHh
Q 048639 274 ILKGFSLSIPAGKMVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 274 ~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g 307 (1139)
++++++++.++. .++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 788999998877 789999999999999999997
No 430
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.61 E-value=0.0011 Score=70.65 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDP 311 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~ 311 (1139)
++..+.|.||+|+|||||++.+......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999987643
No 431
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.61 E-value=0.0059 Score=66.96 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=24.8
Q ss_pred EeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 911 IEPGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 911 I~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
++++..+.|.||+|+||||+++++.+..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4667789999999999999999998864
No 432
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.61 E-value=0.01 Score=67.20 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=33.5
Q ss_pred ccccceeE---EEeCCcEEEEEcCCCCCHHHHHHHHhccccCC-ccEEEECC
Q 048639 902 TVLNNFSL---QIEPGLKVALVGPSGAGKSSVLALLLRFYDPN-EGIILIDG 949 (1139)
Q Consensus 902 ~vL~~vsl---~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~-~G~I~idG 949 (1139)
+.|+.+ + -+++|+.+.|.|++|+|||||+..+..-.... ..-++||.
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 345555 3 38899999999999999999998777544322 23455554
No 433
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.57 E-value=0.0048 Score=68.54 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=27.3
Q ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCccEE
Q 048639 286 KMVALVGSSGCGKSTVISLVARFYDPSNGDI 316 (1139)
Q Consensus 286 ~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i 316 (1139)
..+.++||+|+||||+++.|.+...+.+|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5789999999999999999999987776644
No 434
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.56 E-value=0.0005 Score=75.96 Aligned_cols=62 Identities=16% Similarity=0.204 Sum_probs=49.0
Q ss_pred EEeEEEECCCCCCcccccc-eeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccCCC
Q 048639 888 FQNIKFNYPSRPEVTVLNN-FSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIKEY 955 (1139)
Q Consensus 888 ~~nvsf~Y~~~~~~~vL~~-vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~~~ 955 (1139)
.+++...|... .++ ++++.+ |+.++++|++|+||||++..|.+.+.+..|++.+.+.|+..-
T Consensus 77 ~~~l~~~~~~~-----~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 77 YDELSNLFGGD-----KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHHHTTCS-----CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHHHhccc-----cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 44455556321 145 777776 999999999999999999999999998889999988887653
No 435
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.55 E-value=0.0013 Score=66.43 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.6
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
++|.+++|+|++|+|||||++.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 436
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.48 E-value=0.0012 Score=67.45 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=26.8
Q ss_pred ceeEEecCCCEEEEECCCCCcHHHHHHHHHhc
Q 048639 277 GFSLSIPAGKMVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 277 ~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999876
No 437
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.48 E-value=0.00051 Score=75.90 Aligned_cols=47 Identities=21% Similarity=0.273 Sum_probs=40.7
Q ss_pred cc-eeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccC
Q 048639 276 KG-FSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI 323 (1139)
Q Consensus 276 ~~-is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~ 323 (1139)
++ ++++.+ |++++++|++|+||||++..|++.+.+..|++.+.+.|.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45 777766 999999999999999999999999998888888866554
No 438
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.48 E-value=0.0015 Score=64.30 Aligned_cols=31 Identities=29% Similarity=0.543 Sum_probs=24.6
Q ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc
Q 048639 905 NNFSLQIEPGLKVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 905 ~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r 936 (1139)
++.++++.+| ..+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 3445555555 889999999999999999863
No 439
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.47 E-value=0.00066 Score=77.15 Aligned_cols=43 Identities=16% Similarity=0.310 Sum_probs=32.9
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccc
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMST 456 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 456 (1139)
++.|+++|| ...+++.....+.+.+.+...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 6778888888888888775555567777776654
No 440
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.45 E-value=0.0013 Score=74.89 Aligned_cols=41 Identities=29% Similarity=0.515 Sum_probs=34.8
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhcc-----------ccCCccEEEECCc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRF-----------YDPNEGIILIDGK 950 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl-----------~~p~~G~I~idG~ 950 (1139)
.+..|.++||||++|+|||||+++|.+. .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567899999999999999999999998 6788899988764
No 441
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.44 E-value=0.0068 Score=67.15 Aligned_cols=39 Identities=23% Similarity=0.407 Sum_probs=31.1
Q ss_pred eEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEC
Q 048639 908 SLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILID 948 (1139)
Q Consensus 908 sl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~id 948 (1139)
++.++++..+.|.||+|+||||+++++.+... .+-+.++
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 34578899999999999999999999998763 3444444
No 442
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.43 E-value=0.002 Score=68.53 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCCCHHHHHHHHhccccC
Q 048639 913 PGLKVALVGPSGAGKSSVLALLLRFYDP 940 (1139)
Q Consensus 913 ~Ge~vaIvG~sGSGKSTL~~lL~rl~~p 940 (1139)
++..+.|+||+|+||||+++.+.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999887653
No 443
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.39 E-value=0.0011 Score=67.94 Aligned_cols=37 Identities=27% Similarity=0.388 Sum_probs=31.9
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEE
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDIL 317 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~ 317 (1139)
...+|.+++|+|++||||||+++.|.+.+.+..|.+.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 3457899999999999999999999999887777653
No 444
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.37 E-value=0.00043 Score=78.96 Aligned_cols=58 Identities=26% Similarity=0.320 Sum_probs=36.5
Q ss_pred ccccEEEEeEEEECCCCCCcccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEEC
Q 048639 882 IKGRIEFQNIKFNYPSRPEVTVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILID 948 (1139)
Q Consensus 882 ~~g~I~~~nvsf~Y~~~~~~~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~id 948 (1139)
..|.|.|+|++..|.. ..++++++|+| +|||++|+|||||++.|++...+..|.+..+
T Consensus 14 ~~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~ 71 (361)
T 2qag_A 14 TPGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGA 71 (361)
T ss_dssp -------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC---------
T ss_pred CCceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCC
Confidence 3567999999988852 35889999976 9999999999999999988765555544333
No 445
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.36 E-value=0.0032 Score=74.28 Aligned_cols=58 Identities=7% Similarity=0.040 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHhcCCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh
Q 048639 1027 GGQKQRIAIARTLLKRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV 1096 (1139)
Q Consensus 1027 gGQrQrlalARALlr~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti 1096 (1139)
+.|++....++..+++++++|+......-....+..+.+.+++ .+.. +|++.++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-----------~~~p-vilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR-----------TKKP-VVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-----------CCSC-EEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-----------cCCC-EEEEEECccch
Confidence 3588888888888999988777765554444556667777763 2334 88888887754
No 446
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.36 E-value=0.0027 Score=65.79 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCC
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFYDPN 941 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~~p~ 941 (1139)
..+.|.|++|+|||||++++.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999876543
No 447
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.36 E-value=0.0011 Score=75.15 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=32.8
Q ss_pred CCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh
Q 048639 1042 RPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV 1096 (1139)
Q Consensus 1042 ~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti 1096 (1139)
+++|+++|| .-.++......+.+.+++.. ..+.+|+++++...+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~----------~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYS----------GVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTT----------TTEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcC----------CCceEEEEeCchhhC
Confidence 668999999 56788888888888888642 334477788776644
No 448
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.36 E-value=0.0015 Score=66.84 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=26.7
Q ss_pred ceeEEEeCCcEEEEEcCCCCCHHHHHHHHhcc
Q 048639 906 NFSLQIEPGLKVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 906 ~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
++|+..++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999886
No 449
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.32 E-value=0.009 Score=58.24 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=24.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccCCC
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYDPS 312 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~~~ 312 (1139)
+.+.-+.|.||+|+|||++++.|.......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 455678999999999999999998876543
No 450
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.25 E-value=0.003 Score=63.00 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
-+++|+|++|+|||||++.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 451
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.19 E-value=0.0023 Score=72.90 Aligned_cols=40 Identities=20% Similarity=0.395 Sum_probs=32.4
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhc-----------cCCCccEEEECC
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARF-----------YDPSNGDILIDS 320 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~-----------~~~~~G~i~~~g 320 (1139)
.+..|..++|||++|+|||||++.|.|. .+|+.|.+.+++
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4567889999999999999999999998 567777777665
No 452
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.17 E-value=0.0023 Score=64.58 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=29.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC---ccEEEECCcc
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFYDPS---NGDILIDSLN 322 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~~~g~~ 322 (1139)
-..++|+|+||||||||++.|.+.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3589999999999999999999986543 3566665543
No 453
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.14 E-value=0.0025 Score=64.81 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRF 937 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl 937 (1139)
-+|+++|++|+|||||++.|.+-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999983
No 454
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.13 E-value=0.0026 Score=64.22 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCCHHHHHHHHhccccCC---ccEEEECCcc
Q 048639 915 LKVALVGPSGAGKSSVLALLLRFYDPN---EGIILIDGKG 951 (1139)
Q Consensus 915 e~vaIvG~sGSGKSTL~~lL~rl~~p~---~G~I~idG~d 951 (1139)
..++|+|+||||||||++.|.+.+.+. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 579999999999999999999886543 3778887654
No 455
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.12 E-value=0.0018 Score=66.19 Aligned_cols=40 Identities=30% Similarity=0.493 Sum_probs=33.4
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEE-EECC
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGII-LIDG 949 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I-~idG 949 (1139)
..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345789999999999999999999999988776765 4554
No 456
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.12 E-value=0.0063 Score=64.34 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=33.0
Q ss_pred CCCCEEEeeccccCCCHHHHHHHHHHHHhhCCCCCCccccCCCeEEEEEecCchhh
Q 048639 1041 KRPAIMLLDEATSALDAESERVIVSALEALNPKSSSCGELASRTTQITVAHRLATV 1096 (1139)
Q Consensus 1041 r~p~ILlLDEaTS~LD~~te~~I~~~l~~~~~~~~~~~~~~~~tTvI~IaHrl~ti 1096 (1139)
.++.+|++||+-. +|.+....+.+.+++. ..+..+|+++++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~----------~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP----------PEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC----------CTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC----------CCceEEEEEeCChHhC
Confidence 4678999999876 7888777787777642 2345588888876654
No 457
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.10 E-value=0.0031 Score=65.51 Aligned_cols=31 Identities=19% Similarity=0.460 Sum_probs=25.1
Q ss_pred cceeEEecCCCEEEEECCCCCcHHHHHHHHHh
Q 048639 276 KGFSLSIPAGKMVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 276 ~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g 307 (1139)
++.++.+.+| +++|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 3455666654 999999999999999999863
No 458
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.09 E-value=0.013 Score=68.64 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=66.1
Q ss_pred ccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHH
Q 048639 273 LILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDN 352 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~n 352 (1139)
+-|+.+.--+++|+++.|.|++|+|||||+.-++.......| ..+.|+.=+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g------------------~~vl~~slE----------- 238 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG------------------VGVGIYSLE----------- 238 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC------------------CCEEEEESS-----------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC------------------CeEEEEECC-----------
Confidence 357777656899999999999999999999988876533222 123333322
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC
Q 048639 353 IKVGNMDADDEQIYNASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIVKNPPILLLDEATS 424 (1139)
Q Consensus 353 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~~~~~illlDEpts 424 (1139)
.+.+++...... ....++. + .+. . ..|+..+.+|+.-|-..+.+.++++.|+|..
T Consensus 239 -------~~~~~l~~R~~~-----~~~~i~~--~-~l~-~-g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ 293 (444)
T 2q6t_A 239 -------MPAAQLTLRMMC-----SEARIDM--N-RVR-L-GQLTDRDFSRLVDVASRLSEAPIYIDDTPDL 293 (444)
T ss_dssp -------SCHHHHHHHHHH-----HHTTCCT--T-TCC-G-GGCCHHHHHHHHHHHHHHHTSCEEEECCTTC
T ss_pred -------CCHHHHHHHHHH-----HHcCCCH--H-HHh-C-CCCCHHHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 223333222110 0111211 0 111 1 2699999999988888788888998887643
No 459
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.08 E-value=0.002 Score=69.58 Aligned_cols=41 Identities=24% Similarity=0.359 Sum_probs=33.2
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccC
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNI 323 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~ 323 (1139)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+++-.+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 345678999999999999999999999875 35677777544
No 460
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.07 E-value=0.002 Score=69.53 Aligned_cols=42 Identities=26% Similarity=0.533 Sum_probs=34.6
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccC
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK 953 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~ 953 (1139)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+||-+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 456788999999999999999999998875 356888886554
No 461
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.06 E-value=0.002 Score=66.76 Aligned_cols=32 Identities=31% Similarity=0.437 Sum_probs=26.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECC
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDS 320 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g 320 (1139)
..+++|+|++||||||+++.|.+.+ |...+++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 4689999999999999999999876 4455554
No 462
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.05 E-value=0.0059 Score=71.94 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCcc
Q 048639 398 GGQKQRIAIARAIVKNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMS 455 (1139)
Q Consensus 398 gGqkqRi~lARal~~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 455 (1139)
+.|++-...++..+.+++++|+......-.......+.+.+++ .++.+|++.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D 142 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLD 142 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC-
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECcc
Confidence 3488888889999999998877654443223333455555533 4778888887665
No 463
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.05 E-value=0.01 Score=62.74 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=32.0
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCccch
Q 048639 412 KNPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRMSTI 457 (1139)
Q Consensus 412 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~ 457 (1139)
.++.++++||+-. +|......+.+.+.....+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4578999999765 67777777777665443456788888876544
No 464
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.04 E-value=0.00056 Score=78.00 Aligned_cols=57 Identities=25% Similarity=0.271 Sum_probs=36.3
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEecCCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEECC
Q 048639 255 GNIDIRDVCFAYPSRPDQLILKGFSLSIPAGKMVALVGSSGCGKSTVISLVARFYDPSNGDILIDS 320 (1139)
Q Consensus 255 ~~i~~~~v~~~y~~~~~~~~l~~is~~i~~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g 320 (1139)
+.+.++|++..|.. +.++++++|+| +|+|++|+|||||++.|.|...+..|.+..++
T Consensus 16 ~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 16 GYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp -----CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred ceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 46888888887752 45889999977 99999999999999999988666666554433
No 465
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.03 E-value=0.018 Score=63.76 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCccEE
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFYDPNEGII 945 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I 945 (1139)
...+.|+||+|+||||+++++.+...+.+|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35799999999999999999999987766643
No 466
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.03 E-value=0.0021 Score=66.63 Aligned_cols=35 Identities=31% Similarity=0.468 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccc
Q 048639 914 GLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGI 952 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di 952 (1139)
...|+|+|++||||||+++.|.+.+ |...+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4679999999999999999998876 5566765444
No 467
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.01 E-value=0.0033 Score=70.50 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=24.7
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~r 936 (1139)
-+++|+.+.|.|++||||||++.-+..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999987775
No 468
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.99 E-value=0.0049 Score=61.39 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhccC
Q 048639 287 MVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
+++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998643
No 469
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.97 E-value=0.021 Score=55.54 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhcccc
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYD 939 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~ 939 (1139)
+.+.-|-|.|++|+|||++++++.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 4566799999999999999999987654
No 470
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.95 E-value=0.0031 Score=64.29 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHHhcc
Q 048639 288 VALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 288 ~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
+.|+||||||||||++.|...+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999998665
No 471
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.95 E-value=0.037 Score=59.53 Aligned_cols=25 Identities=36% Similarity=0.503 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
..-+.|.||+|+||||+++.++..+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4458899999999999999999865
No 472
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.92 E-value=0.0036 Score=63.84 Aligned_cols=75 Identities=31% Similarity=0.549 Sum_probs=49.1
Q ss_pred EEEEcCCCCCHHHHHHHHhcccc-------------CCccEEEECCcccCCCChHHHhhhceEEccccccccccHHHHhc
Q 048639 917 VALVGPSGAGKSSVLALLLRFYD-------------PNEGIILIDGKGIKEYNLRRLRSQIGLVQQEPLLFSCSIRNNIC 983 (1139)
Q Consensus 917 vaIvG~sGSGKSTL~~lL~rl~~-------------p~~G~I~idG~di~~~~l~~lR~~i~~V~Qdp~LF~gTIreNL~ 983 (1139)
|.|+||||||||||++.|+.-++ |..|+ +||+|.--++.+...+.+ -++-++-.+.+..|.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~i---~~g~flE~~~~~g~~- 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGNY- 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HTTCEEEEEEETTEE-
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHHH---HcCCEEEEEEEcCce-
Confidence 78999999999999999875432 34566 489988888877776543 344455444444442
Q ss_pred cCCCcCCHHHHHHHHHH
Q 048639 984 YGNEAASEAEIVEVSKK 1000 (1139)
Q Consensus 984 ~~~~~~sd~ei~~al~~ 1000 (1139)
||. +.+.+.++++.
T Consensus 78 YGt---~~~~v~~~l~~ 91 (186)
T 1ex7_A 78 YGS---TVASVKQVSKS 91 (186)
T ss_dssp EEE---EHHHHHHHHHH
T ss_pred eee---ecceeeehhhC
Confidence 342 34556555544
No 473
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.88 E-value=0.0015 Score=73.06 Aligned_cols=38 Identities=32% Similarity=0.402 Sum_probs=34.5
Q ss_pred ccccceeEEecCCCE--EEEECCCCCcHHHHHHHHHhccC
Q 048639 273 LILKGFSLSIPAGKM--VALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 273 ~~l~~is~~i~~g~~--~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 378889999999999 99999999999999999998763
No 474
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.87 E-value=0.027 Score=63.91 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=24.0
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.+..-+.|.||+|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999875
No 475
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.86 E-value=0.01 Score=63.63 Aligned_cols=123 Identities=16% Similarity=0.130 Sum_probs=0.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCCCccEEEECCccCCCCCHHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCHHHHH
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDPSNGDILIDSLNIKDLDLKSLRKNIGAVSQEPSLFTGSLMDNIKVGNMDADDEQIY 366 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~ 366 (1139)
.++|+|++|+|||||++.|+|.-....+.-...-..-.......+...--.+-..|-++.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~-------------------- 82 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFS-------------------- 82 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSS--------------------
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCC--------------------
Q ss_pred HHHHHhcHHHHHHhCCCCCCccccccCCCCChHHHHHHHHHHHHc---cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHcC
Q 048639 367 NASMMANAHSFISQLPDQYSTELGQRGVQLSGGQKQRIAIARAIV---KNPPILLLDEATSALDSESEKLVQEALERAMQ 443 (1139)
Q Consensus 367 ~~~~~~~~~~~i~~l~~g~~t~i~~~g~~LSgGqkqRi~lARal~---~~~~illlDEpts~LD~~~~~~i~~~l~~~~~ 443 (1139)
...+.|++.+-.+.|+++ .+++++|+--+.+.++......+.........
T Consensus 83 ---------------------------~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~ 135 (247)
T 3lxw_A 83 ---------------------------SQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE 135 (247)
T ss_dssp ---------------------------TTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG
T ss_pred ---------------------------CCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh
Q ss_pred ---CCeEEEEecCccc
Q 048639 444 ---GRTVILIAHRMST 456 (1139)
Q Consensus 444 ---~~tvi~itH~~~~ 456 (1139)
+.++|+++|..+.
T Consensus 136 ~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 136 DVLKWMVIVFTRKEDL 151 (247)
T ss_dssp GGGGGEEEEEECGGGG
T ss_pred hhhccEEEEEEchHhc
No 476
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.85 E-value=0.0021 Score=69.54 Aligned_cols=47 Identities=23% Similarity=0.374 Sum_probs=32.0
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCcccC
Q 048639 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGIK 953 (1139)
Q Consensus 903 vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di~ 953 (1139)
.++++++.+++| +.|+||+|+||||+++++.+..... -+.+++.++.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~ 82 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFV 82 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSST
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHH
Confidence 345555555555 9999999999999999999987532 4677766553
No 477
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.79 E-value=0.0042 Score=63.17 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhc
Q 048639 287 MVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
.++++|++|+|||||++.+.|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 478
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.75 E-value=0.0041 Score=64.44 Aligned_cols=21 Identities=43% Similarity=0.789 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHh
Q 048639 287 MVALVGSSGCGKSTVISLVAR 307 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g 307 (1139)
+++|+|++||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 479
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.73 E-value=0.015 Score=64.04 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=25.7
Q ss_pred EEecCCCEEEEECCCCCcHHHHHHHHHhc
Q 048639 280 LSIPAGKMVALVGSSGCGKSTVISLVARF 308 (1139)
Q Consensus 280 ~~i~~g~~~~ivG~sGsGKSTll~~l~g~ 308 (1139)
--+++|..+.|.||+|+|||||+..++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 35788999999999999999999999864
No 480
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.65 E-value=0.0051 Score=62.52 Aligned_cols=25 Identities=32% Similarity=0.644 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhccccC
Q 048639 916 KVALVGPSGAGKSSVLALLLRFYDP 940 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~rl~~p 940 (1139)
+|+|+|++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 7999999999999999999997543
No 481
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.65 E-value=0.019 Score=65.70 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=25.2
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhccCC
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFYDP 311 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~~~ 311 (1139)
..+..+.|.||+|+|||||++.+......
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45778999999999999999999987643
No 482
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.62 E-value=0.0054 Score=63.57 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 048639 916 KVALVGPSGAGKSSVLALLLR 936 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r 936 (1139)
+|+|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 483
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.59 E-value=0.0054 Score=62.32 Aligned_cols=25 Identities=24% Similarity=0.521 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhccCC
Q 048639 287 MVALVGSSGCGKSTVISLVARFYDP 311 (1139)
Q Consensus 287 ~~~ivG~sGsGKSTll~~l~g~~~~ 311 (1139)
+++|+|++|+|||||++.+.|...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999997544
No 484
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.59 E-value=0.024 Score=64.51 Aligned_cols=41 Identities=24% Similarity=0.421 Sum_probs=32.0
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccccCCccEEEECCccc
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFYDPNEGIILIDGKGI 952 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G~I~idG~di 952 (1139)
.+|..+.|.||+|+||||+++.+.+.......-+.+++..+
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 108 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEI 108 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhh
Confidence 45678999999999999999999998764444556655443
No 485
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.53 E-value=0.0071 Score=61.01 Aligned_cols=27 Identities=26% Similarity=0.457 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
.|.++.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357899999999999999999998764
No 486
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.51 E-value=0.002 Score=71.91 Aligned_cols=37 Identities=35% Similarity=0.524 Sum_probs=33.9
Q ss_pred ccccceeEEEeCCcE--EEEEcCCCCCHHHHHHHHhccc
Q 048639 902 TVLNNFSLQIEPGLK--VALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~--vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
.+++.+++.+++|++ ++|+|++||||||+.++|.+.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478899999999998 9999999999999999998864
No 487
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.50 E-value=0.012 Score=61.66 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=33.9
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHcCCCeEEEEecCc-----------cchhccCEEEEEe
Q 048639 413 NPPILLLDEATSALDSESEKLVQEALERAMQGRTVILIAHRM-----------STIVNADMIAVVE 467 (1139)
Q Consensus 413 ~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~-----------~~~~~~d~i~~l~ 467 (1139)
+++++++||.-- |+.+.-+.+ ..+.+ .+.+||++-|+. +.+..||+|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 665432222 22322 388999999932 2234599998876
No 488
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.49 E-value=0.071 Score=58.91 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHHhccC
Q 048639 285 GKMVALVGSSGCGKSTVISLVARFYD 310 (1139)
Q Consensus 285 g~~~~ivG~sGsGKSTll~~l~g~~~ 310 (1139)
+..+.|.||+|+||||+++.++..+.
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999888763
No 489
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.49 E-value=0.0088 Score=67.48 Aligned_cols=36 Identities=31% Similarity=0.634 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCCCHHHHHHHHhc-----------cccCCccEEEECC
Q 048639 914 GLKVALVGPSGAGKSSVLALLLR-----------FYDPNEGIILIDG 949 (1139)
Q Consensus 914 Ge~vaIvG~sGSGKSTL~~lL~r-----------l~~p~~G~I~idG 949 (1139)
|-+++|||++|+|||||++.|.+ -.+|..|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4567788888776
No 490
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.49 E-value=0.0084 Score=65.98 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=35.0
Q ss_pred cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhc----cccCCccEEEECC
Q 048639 903 VLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLR----FYDPNEGIILIDG 949 (1139)
Q Consensus 903 vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~r----l~~p~~G~I~idG 949 (1139)
++++..+.+ .|.-++|+|+||+||||++..|.+ +...+...|...|
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 567777777 788999999999999999999987 5544444454433
No 491
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.48 E-value=0.017 Score=67.72 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=71.5
Q ss_pred ccccceeEEEeCCcEEEEEcCCCCCHHHHHHHHhccccCCcc--EEEECCcccCCCChHHHhhhce----EEcccccccc
Q 048639 902 TVLNNFSLQIEPGLKVALVGPSGAGKSSVLALLLRFYDPNEG--IILIDGKGIKEYNLRRLRSQIG----LVQQEPLLFS 975 (1139)
Q Consensus 902 ~vL~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~~p~~G--~I~idG~di~~~~l~~lR~~i~----~V~Qdp~LF~ 975 (1139)
+.|+.+.--+++|+.+.|.||+|+||||++.-+..-.-...| -++++. +.+...+..++- -++.+.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl----E~~~~~l~~R~~~~~~~i~~~~---- 259 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL----EMPAAQLTLRMMCSEARIDMNR---- 259 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES----SSCHHHHHHHHHHHHTTCCTTT----
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC----CCCHHHHHHHHHHHHcCCCHHH----
Confidence 457777656999999999999999999999888776543223 333433 355666655531 122111
Q ss_pred ccHHHHhccCCCcCCHHHHHHHHHHcCchHHHhhCCCCccccccCCCCCCChHHHHHHHHHHHhc--CCCCEEEeecccc
Q 048639 976 CSIRNNICYGNEAASEAEIVEVSKKANIHDFISSLPDGYDTVVGEKGCQLSGGQKQRIAIARTLL--KRPAIMLLDEATS 1053 (1139)
Q Consensus 976 gTIreNL~~~~~~~sd~ei~~al~~~~l~~~i~~lp~gldt~v~e~G~~LSgGQrQrlalARALl--r~p~ILlLDEaTS 1053 (1139)
++. ...++++.....+.+ +.+...| -.+.+. ..+|..+ ..+.+|.+. .+++++|+|..+.
T Consensus 260 --l~~------g~l~~~~~~~~~~a~---~~l~~~~----l~i~d~-~~~s~~~--l~~~~~~l~~~~~~~lIvID~l~~ 321 (444)
T 2q6t_A 260 --VRL------GQLTDRDFSRLVDVA---SRLSEAP----IYIDDT-PDLTLME--VRARARRLVSQNQVGLIIIDYLQL 321 (444)
T ss_dssp --CCG------GGCCHHHHHHHHHHH---HHHHTSC----EEEECC-TTCBHHH--HHHHHHHHHHHSCCCEEEEECGGG
T ss_pred --HhC------CCCCHHHHHHHHHHH---HHHhcCC----EEEECC-CCCCHHH--HHHHHHHHHHHcCCCEEEEcChhh
Confidence 111 123444422222111 1122111 111111 2456554 456667666 3789999999887
Q ss_pred CCCH
Q 048639 1054 ALDA 1057 (1139)
Q Consensus 1054 ~LD~ 1057 (1139)
-.+.
T Consensus 322 ~~~~ 325 (444)
T 2q6t_A 322 MSGP 325 (444)
T ss_dssp CBCC
T ss_pred cCCC
Confidence 6543
No 492
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.47 E-value=0.0059 Score=62.12 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=23.6
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
No 493
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.44 E-value=0.085 Score=59.73 Aligned_cols=29 Identities=24% Similarity=0.459 Sum_probs=25.4
Q ss_pred EecCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 281 SIPAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 281 ~i~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
-+++|+++.|.||+|||||||+..++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 47899999999999999999998776544
No 494
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.44 E-value=0.01 Score=60.32 Aligned_cols=36 Identities=36% Similarity=0.604 Sum_probs=27.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-c----ccCCcc----EEEECCcc
Q 048639 916 KVALVGPSGAGKSSVLALLLR-F----YDPNEG----IILIDGKG 951 (1139)
Q Consensus 916 ~vaIvG~sGSGKSTL~~lL~r-l----~~p~~G----~I~idG~d 951 (1139)
+|+|+|++|+|||||++.+.+ - +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 699999999999999976554 3 566666 66777743
No 495
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.43 E-value=0.008 Score=62.37 Aligned_cols=30 Identities=27% Similarity=0.461 Sum_probs=23.7
Q ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHHh
Q 048639 905 NNFSLQIEPGLKVALVGPSGAGKSSVLALLL 935 (1139)
Q Consensus 905 ~~vsl~I~~Ge~vaIvG~sGSGKSTL~~lL~ 935 (1139)
++.++++.+ ...+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 344555555 488999999999999999875
No 496
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.37 E-value=0.098 Score=56.09 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=22.8
Q ss_pred eCCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 912 EPGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 912 ~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
++..-+.|.||+|+||||+++++.+..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344568999999999999999998754
No 497
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.34 E-value=0.096 Score=58.38 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=23.8
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHHhcc
Q 048639 283 PAGKMVALVGSSGCGKSTVISLVARFY 309 (1139)
Q Consensus 283 ~~g~~~~ivG~sGsGKSTll~~l~g~~ 309 (1139)
.+..-+.|.||+|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 345678999999999999999999876
No 498
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.33 E-value=0.085 Score=60.95 Aligned_cols=29 Identities=28% Similarity=0.623 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDPS 312 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~~ 312 (1139)
++.+++++|++||||||++..|+..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 45689999999999999999999887653
No 499
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.31 E-value=0.073 Score=60.26 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=25.0
Q ss_pred EEeCCcEEEEEcCCCCCHHHHHHHHhccc
Q 048639 910 QIEPGLKVALVGPSGAGKSSVLALLLRFY 938 (1139)
Q Consensus 910 ~I~~Ge~vaIvG~sGSGKSTL~~lL~rl~ 938 (1139)
-+++|+.+.|.||.|+|||||+..+..-.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 47899999999999999999997776543
No 500
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.31 E-value=0.0072 Score=69.72 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=32.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCccEEEEC
Q 048639 284 AGKMVALVGSSGCGKSTVISLVARFYDPSNGDILID 319 (1139)
Q Consensus 284 ~g~~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~~~ 319 (1139)
.+..++|+|++||||||+++.+++.+.+..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 577899999999999999999999888888888773
Done!