BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048641
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In
Complex With Its Chaperone Daxx
Length = 136
Score = 143 bits (360), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/136 (58%), Positives = 86/136 (63%), Gaps = 15/136 (11%)
Query: 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER--------- 51
MAR KQTARKSTGGKAPRKQLATKAARK S G ++ ++ G L
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 52 ------DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 105
+RLVREIAQDFKTD+RF GLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 106 MPKDIQLARRIRGERA 121
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.3
Length = 139
Score = 143 bits (360), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/136 (58%), Positives = 86/136 (63%), Gaps = 15/136 (11%)
Query: 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER--------- 51
MAR KQTARKSTGGKAPRKQLATKAARK S G ++ ++ G L
Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 63
Query: 52 ------DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 105
+RLVREIAQDFKTD+RF GLFEDTNLCAIHAKRVTI
Sbjct: 64 LLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTI 123
Query: 106 MPKDIQLARRIRGERA 121
MPKDIQLARRIRGERA
Sbjct: 124 MPKDIQLARRIRGERA 139
>pdb|3AV1|A Chain A, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|E Chain E, The Human Nucleosome Structure Containing The Histone
Variant H3.2
Length = 139
Score = 142 bits (359), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/136 (58%), Positives = 86/136 (63%), Gaps = 15/136 (11%)
Query: 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER--------- 51
MAR KQTARKSTGGKAPRKQLATKAARK + G ++ ++ G L
Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 63
Query: 52 ------DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 105
+RLVREIAQDFKTD+RF GLFEDTNLCAIHAKRVTI
Sbjct: 64 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 123
Query: 106 MPKDIQLARRIRGERA 121
MPKDIQLARRIRGERA
Sbjct: 124 MPKDIQLARRIRGERA 139
>pdb|2HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein
pdb|1EQZ|C Chain C, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|G Chain G, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|C Chain C, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|G Chain G, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|C Chain C, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|G Chain G, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|C Chain C, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|G Chain G, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2F8N|A Chain A, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
pdb|2F8N|E Chain E, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 136
Score = 142 bits (359), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/136 (58%), Positives = 86/136 (63%), Gaps = 15/136 (11%)
Query: 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER--------- 51
MAR KQTARKSTGGKAPRKQLATKAARK + G ++ ++ G L
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 52 ------DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 105
+RLVREIAQDFKTD+RF GLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 106 MPKDIQLARRIRGERA 121
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>pdb|3AZE|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
Length = 139
Score = 142 bits (359), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 79/136 (58%), Positives = 87/136 (63%), Gaps = 15/136 (11%)
Query: 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGL----------- 49
MAR KQTARKSTGGKAPRKQLATKAARK + G ++ ++ G L
Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 63
Query: 50 ----ERDLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 105
+ +RLVREIAQDFKTD+RF GLFEDTNLCAIHAKRVTI
Sbjct: 64 LLIRQLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 123
Query: 106 MPKDIQLARRIRGERA 121
MPKDIQLARRIRGERA
Sbjct: 124 MPKDIQLARRIRGERA 139
>pdb|2CV5|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
pdb|1U35|A Chain A, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|E Chain E, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
Length = 136
Score = 142 bits (357), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 79/136 (58%), Positives = 86/136 (63%), Gaps = 15/136 (11%)
Query: 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER--------- 51
MAR KQTARKSTGGKAPRKQLATKAARK + G ++ ++ G L
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 52 ------DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 105
+RLVREIAQDFKTD+RF GLFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 120
Query: 106 MPKDIQLARRIRGERA 121
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>pdb|3AYW|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
Length = 139
Score = 142 bits (357), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 79/136 (58%), Positives = 86/136 (63%), Gaps = 15/136 (11%)
Query: 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER--------- 51
MAR KQTARKSTGGKAPRKQLATKAARK + G ++ ++ G L
Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQQSTE 63
Query: 52 ------DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 105
+RLVREIAQDFKTD+RF GLFEDTNLCAIHAKRVTI
Sbjct: 64 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 123
Query: 106 MPKDIQLARRIRGERA 121
MPKDIQLARRIRGERA
Sbjct: 124 MPKDIQLARRIRGERA 139
>pdb|3AFA|A Chain A, The Human Nucleosome Structure
pdb|3AFA|E Chain E, The Human Nucleosome Structure
pdb|3AZI|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 139
Score = 142 bits (357), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 79/136 (58%), Positives = 86/136 (63%), Gaps = 15/136 (11%)
Query: 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER--------- 51
MAR KQTARKSTGGKAPRKQLATKAARK + G ++ ++ G L
Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 63
Query: 52 ------DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 105
+RLVREIAQDFKTD+RF GLFEDTNLCAIHAKRVTI
Sbjct: 64 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 123
Query: 106 MPKDIQLARRIRGERA 121
MPKDIQLARRIRGERA
Sbjct: 124 MPKDIQLARRIRGERA 139
>pdb|1F66|A Chain A, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|E Chain E, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 136
Score = 141 bits (356), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 85/136 (62%), Gaps = 15/136 (11%)
Query: 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER--------- 51
MAR KQTARKSTGGKAPRKQLATKAARK + G ++ ++ G L
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGEVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 52 ------DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 105
+RLVREIAQDFKTD+RF LFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTI 120
Query: 106 MPKDIQLARRIRGERA 121
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>pdb|1P3B|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 141 bits (356), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 78/135 (57%), Positives = 85/135 (62%), Gaps = 15/135 (11%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER---------- 51
AR KQTARKSTGGKAPRKQLATKAARK + G S++ ++ G L
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 52 -----DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIM 106
+RLVREIAQDFKTD+RF LFEDTNLCAIHAKRVTIM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 120
Query: 107 PKDIQLARRIRGERA 121
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|3AZH|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
Length = 139
Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 86/136 (63%), Gaps = 15/136 (11%)
Query: 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER--------- 51
MAR KQTARKSTGGKAPRKQLATKAARK + G ++ ++ G L
Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 63
Query: 52 ------DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 105
+RLVREIAQDFKTD+RF GLFEDTNLCAIHAKRVTI
Sbjct: 64 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 123
Query: 106 MPKDIQLARRIRGERA 121
MP+DIQLARRIRGERA
Sbjct: 124 MPQDIQLARRIRGERA 139
>pdb|3AZG|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
Length = 139
Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 86/136 (63%), Gaps = 15/136 (11%)
Query: 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER--------- 51
MAR KQTARKSTGGKAPRKQLATKAARK + G ++ ++ G L
Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 63
Query: 52 ------DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 105
+RLVREIAQDFKTD+RF GLFEDTNLCAIHA+RVTI
Sbjct: 64 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAQRVTI 123
Query: 106 MPKDIQLARRIRGERA 121
MPKDIQLARRIRGERA
Sbjct: 124 MPKDIQLARRIRGERA 139
>pdb|3AZF|A Chain A, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|E Chain E, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
Length = 139
Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 86/136 (63%), Gaps = 15/136 (11%)
Query: 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER--------- 51
MAR KQTARKSTGGKAPRKQLATKAARK + G ++ ++ G L
Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 63
Query: 52 ------DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 105
+RLVREIAQDF+TD+RF GLFEDTNLCAIHAKRVTI
Sbjct: 64 LLIRKLPFQRLVREIAQDFQTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTI 123
Query: 106 MPKDIQLARRIRGERA 121
MPKDIQLARRIRGERA
Sbjct: 124 MPKDIQLARRIRGERA 139
>pdb|3LEL|A Chain A, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|E Chain E, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|K Chain K, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|O Chain O, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
Length = 136
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/136 (57%), Positives = 85/136 (62%), Gaps = 15/136 (11%)
Query: 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER--------- 51
MAR KQTARKSTGGKAPRKQLATKAARK + G ++ ++ G L
Sbjct: 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 52 ------DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 105
+RLVREIAQDFKTD+RF LFEDTNLCAIHAKRVTI
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTI 120
Query: 106 MPKDIQLARRIRGERA 121
MPKDIQLARRIRGERA
Sbjct: 121 MPKDIQLARRIRGERA 136
>pdb|2IO5|B Chain B, Crystal Structure Of The Cia- Histone H3-H4 Complex
pdb|2NQB|A Chain A, Drosophila Nucleosome Structure
pdb|2NQB|E Chain E, Drosophila Nucleosome Structure
pdb|2PYO|A Chain A, Drosophila Nucleosome Core
pdb|2PYO|E Chain E, Drosophila Nucleosome Core
pdb|3C9K|C Chain C, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|G Chain G, Model Of Histone Octamer Tubular Crystals
Length = 135
Score = 140 bits (353), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/135 (57%), Positives = 85/135 (62%), Gaps = 15/135 (11%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER---------- 51
AR KQTARKSTGGKAPRKQLATKAARK + G ++ ++ G L
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 52 -----DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIM 106
+RLVREIAQDFKTD+RF GLFEDTNLCAIHAKRVTIM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 120
Query: 107 PKDIQLARRIRGERA 121
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|1P3A|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 139 bits (351), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 84/135 (62%), Gaps = 15/135 (11%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER---------- 51
AR KQTARKSTGGKAPRKQLATKAARK + G S++ ++ G L
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 52 -----DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIM 106
+RLVREIAQDFKTD+RF LFEDTNLCAIHAK VTIM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKHVTIM 120
Query: 107 PKDIQLARRIRGERA 121
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|1P3K|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 139 bits (351), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 84/135 (62%), Gaps = 15/135 (11%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER---------- 51
AR KQTARKSTGGKAPRKQLATKAARK + G S++ ++ G L
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 52 -----DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIM 106
+RLVREIAQDFKTD+RF LFEDTNLCAIHAKRV IM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVAIM 120
Query: 107 PKDIQLARRIRGERA 121
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|1P3M|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 139 bits (350), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 84/135 (62%), Gaps = 15/135 (11%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER---------- 51
AR KQTARKSTGGKAPRKQLATKAARK + G S++ ++ G L
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 52 -----DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIM 106
+RLVREIAQDFKTD+RF LFEDTNLCAIHAKRV IM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVIIM 120
Query: 107 PKDIQLARRIRGERA 121
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|1P3L|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 84/135 (62%), Gaps = 15/135 (11%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER---------- 51
AR KQTARKSTGGKAPRKQLATKAARK + G S++ ++ G L
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 52 -----DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIM 106
+RLVREIAQDFKTD+RF LFEDTNLCAIHAKRV IM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVHIM 120
Query: 107 PKDIQLARRIRGERA 121
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|1P34|A Chain A, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|E Chain E, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 135
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 84/135 (62%), Gaps = 15/135 (11%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER---------- 51
AR KQTARKSTGGKAPRKQLATKAARK + G S++ ++ G L
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 52 -----DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIM 106
+RLVREIAQDFKTD+RF LFEDTNLCAIHAK VTIM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKAVTIM 120
Query: 107 PKDIQLARRIRGERA 121
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|3KXB|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
Length = 135
Score = 138 bits (348), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 84/135 (62%), Gaps = 15/135 (11%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER---------- 51
AR KQTARKSTGGKAPRKQLATKAARK + G ++ ++ G L
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQESTEL 60
Query: 52 -----DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIM 106
+RLVREIAQDFKTD+RF LFEDTNLCAIHAKRVTIM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 120
Query: 107 PKDIQLARRIRGERA 121
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|1KX3|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|E Chain E, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|A Chain A, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|E Chain E, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1S32|A Chain A, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|E Chain E, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1ZBB|A Chain A, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|E Chain E, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|AA Chain a, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|EE Chain e, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|A Chain A, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|E Chain E, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2NZD|A Chain A, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|E Chain E, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3B6F|A Chain A, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|E Chain E, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|A Chain A, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|E Chain E, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3C1B|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3KUY|A Chain A, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|E Chain E, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3LJA|A Chain A, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|E Chain E, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3MGP|A Chain A, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|E Chain E, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|A Chain A, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|E Chain E, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|A Chain A, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|E Chain E, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|A Chain A, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|E Chain E, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MVD|A Chain A, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|E Chain E, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3LZ0|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|A Chain A, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|E Chain E, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3O62|A Chain A, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|E Chain E, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3MNN|A Chain A, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|E Chain E, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3TU4|A Chain A, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|E Chain E, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|A Chain A, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|E Chain E, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|A Chain A, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|E Chain E, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|A Chain A, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|E Chain E, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|A Chain A, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|E Chain E, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|A Chain A, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|E Chain E, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|A Chain A, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|E Chain E, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 135
Score = 138 bits (347), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 84/135 (62%), Gaps = 15/135 (11%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER---------- 51
AR KQTARKSTGGKAPRKQLATKAARK + G ++ ++ G L
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 52 -----DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIM 106
+RLVREIAQDFKTD+RF LFEDTNLCAIHAKRVTIM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 120
Query: 107 PKDIQLARRIRGERA 121
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|3A6N|A Chain A, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|E Chain E, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
Length = 139
Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/136 (55%), Positives = 84/136 (61%), Gaps = 15/136 (11%)
Query: 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER--------- 51
MAR KQTARKSTGGKAPRKQLATK ARK + G ++ ++ G L
Sbjct: 4 MARTKQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 63
Query: 52 ------DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTI 105
+RL+REIAQDFKTD+RF GLFEDTNLC IHAKRVTI
Sbjct: 64 LLIRKLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTI 123
Query: 106 MPKDIQLARRIRGERA 121
MPKDIQLARRIRGERA
Sbjct: 124 MPKDIQLARRIRGERA 139
>pdb|1M18|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|A Chain A, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|E Chain E, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
Length = 135
Score = 136 bits (342), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/135 (55%), Positives = 83/135 (61%), Gaps = 15/135 (11%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER---------- 51
AR KQTARKSTGGKAPRKQL TKAA+K + G ++ ++ G L
Sbjct: 1 ARTKQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 52 -----DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIM 106
+RLVREIAQDFKTD+RF LFEDTNLCAIHAKRVTIM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 120
Query: 107 PKDIQLARRIRGERA 121
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|1ZLA|A Chain A, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|E Chain E, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 135
Score = 135 bits (341), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 83/135 (61%), Gaps = 15/135 (11%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER---------- 51
AR KQTARKSTGGKAPRKQLATKAARK + G ++ ++ G L
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 52 -----DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIM 106
+RLVREIAQDFKTD+RF LFEDTNLCAIHAKRV IM
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVHIM 120
Query: 107 PKDIQLARRIRGERA 121
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|4H9O|A Chain A, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4
Length = 135
Score = 134 bits (338), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 82/135 (60%), Gaps = 15/135 (11%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER---------- 51
AR KQTARKSTGGKAPRKQLATKAARK S G ++ ++ G L
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 52 -----DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIM 106
+RLVREIAQDFKTD+RF LFEDTNLC IHAKRVTI
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSAAIMALQEAAEAFLVALFEDTNLCTIHAKRVTIF 120
Query: 107 PKDIQLARRIRGERA 121
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|4H9N|A Chain A, Complex Structure 1 Of DaxxH3.3(SUB5)H4
pdb|4H9Q|A Chain A, Complex Structure 4 Of Daxx(E225a)H3.3(SUB5)H4
Length = 135
Score = 134 bits (336), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 82/135 (60%), Gaps = 15/135 (11%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER---------- 51
AR KQTARKSTGGKAPRKQLATKAARK S G ++ ++ G L
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 52 -----DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIM 106
+RLVREIAQDFKTD+RF LFEDTNLC IHAKRVTI
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAFLVALFEDTNLCTIHAKRVTIF 120
Query: 107 PKDIQLARRIRGERA 121
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|4H9P|A Chain A, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4
pdb|4H9R|A Chain A, Complex Structure 5 Of Daxx(E225a)H3.3(SUB5,G90A)H4
Length = 135
Score = 133 bits (335), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 82/135 (60%), Gaps = 15/135 (11%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER---------- 51
AR KQTARKSTGGKAPRKQLATKAARK S G ++ ++ G L
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 52 -----DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIM 106
+RLVREIAQDFKTD+RF LFEDTNLC IHAKRVTI
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAFLVALFEDTNLCTIHAKRVTIF 120
Query: 107 PKDIQLARRIRGERA 121
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|3C1C|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|E Chain E, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 135
Score = 132 bits (333), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/135 (55%), Positives = 82/135 (60%), Gaps = 15/135 (11%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER---------- 51
AR KQTARKSTGGKAPRKQLATKAARK + G ++ ++ G L
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 52 -----DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIM 106
+RLVREIAQDF TD+RF LFEDTNL AIHAKRVTIM
Sbjct: 61 LIRKLPFQRLVREIAQDFXTDLRFQSSAVMALQEASEAYLVALFEDTNLAAIHAKRVTIM 120
Query: 107 PKDIQLARRIRGERA 121
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|4H9S|A Chain A, Complex Structure 6 Of DaxxH3.3(SUB7)H4
pdb|4H9S|B Chain B, Complex Structure 6 Of DaxxH3.3(SUB7)H4
Length = 135
Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/135 (54%), Positives = 81/135 (60%), Gaps = 15/135 (11%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER---------- 51
AR KQTARKSTGGKAPRKQLATKAARK S G ++ ++ G L
Sbjct: 1 ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 52 -----DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIM 106
+RLVREI QDFKTD+R+ LFEDTNLC IHAKRVTI
Sbjct: 61 LIRKLPFQRLVREICQDFKTDLRWQSAAIGALQEAAEAFLVALFEDTNLCTIHAKRVTIF 120
Query: 107 PKDIQLARRIRGERA 121
PKDIQLARRIRGERA
Sbjct: 121 PKDIQLARRIRGERA 135
>pdb|1ID3|A Chain A, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|E Chain E, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 135
Score = 121 bits (304), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 70/135 (51%), Positives = 81/135 (60%), Gaps = 15/135 (11%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLER---------- 51
AR KQTARKSTGGKAPRKQLA+KAARK S G ++ ++ G L
Sbjct: 1 ARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTEL 60
Query: 52 -----DLKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIM 106
+RLVREIAQDFKTD+RF LFEDTNL AIHAKRVTI
Sbjct: 61 LIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQ 120
Query: 107 PKDIQLARRIRGERA 121
K+I+LARR+RGER+
Sbjct: 121 KKEIKLARRLRGERS 135
>pdb|1AOI|A Chain A, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|E Chain E, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 116
Score = 105 bits (261), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 67/116 (57%), Gaps = 15/116 (12%)
Query: 21 LATKAARKVRSSNGRSEETTPFQAGNSGL---------------ERDLKRLVREIAQDFK 65
LATKAARK + G ++ ++ G L + +RLVREIAQDFK
Sbjct: 1 LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 60
Query: 66 TDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 121
TD+RF LFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct: 61 TDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 116
>pdb|1HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 93
Score = 101 bits (251), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 56/82 (68%), Gaps = 2/82 (2%)
Query: 42 FQAGNSGLERDL--KRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIH 99
+Q L R L +RLVREIAQDFKTD+RF GLFEDTNLCAIH
Sbjct: 12 YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIH 71
Query: 100 AKRVTIMPKDIQLARRIRGERA 121
AKRVTIMPKDI+LARRIRGERA
Sbjct: 72 AKRVTIMPKDIELARRIRGERA 93
>pdb|3KWQ|A Chain A, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|E Chain E, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 98
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 55/82 (67%), Gaps = 2/82 (2%)
Query: 42 FQAGNSGLERDL--KRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIH 99
+Q L R L +RLVREIAQDFKTD+RF LFEDTNLCAIH
Sbjct: 17 YQESTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIH 76
Query: 100 AKRVTIMPKDIQLARRIRGERA 121
AKRVTIMPKDIQLARRIRGERA
Sbjct: 77 AKRVTIMPKDIQLARRIRGERA 98
>pdb|4EO5|B Chain B, Yeast Asf1 Bound To H3H4G94P MUTANT
Length = 76
Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 50/69 (72%)
Query: 53 LKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 112
+RLVREIAQDFKTD+RF LFEDTNLCAIHAKRVTIMPKDIQL
Sbjct: 8 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQL 67
Query: 113 ARRIRGERA 121
ARRIRGERA
Sbjct: 68 ARRIRGERA 76
>pdb|2HUE|B Chain B, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones H3
And H4
Length = 77
Score = 100 bits (248), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 50/69 (72%)
Query: 53 LKRLVREIAQDFKTDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQL 112
+RLVREIAQDFKTD+RF LFEDTNLCAIHAKRVTIMPKDIQL
Sbjct: 9 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQL 68
Query: 113 ARRIRGERA 121
ARRIRGERA
Sbjct: 69 ARRIRGERA 77
>pdb|2L5A|A Chain A, Structural Basis For Recognition Of Centromere Specific
Histone H3 Variant By Nonhistone Scm3
Length = 235
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 55 RLVREIAQDFKT---DMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQ 111
RLV+E+ +F T D+R+ GL E TNL A+HAKR+TIM KD+Q
Sbjct: 19 RLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQ 78
Query: 112 LARRIRGE 119
LARRIRG+
Sbjct: 79 LARRIRGQ 86
>pdb|2YFW|A Chain A, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|C Chain C, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|E Chain E, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|G Chain G, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
Length = 92
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 55 RLVREIAQDFKTD---MRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQ 111
RLV+E+ F T+ +R+ GL E TNL A+HAKR+TIM KD+Q
Sbjct: 23 RLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQ 82
Query: 112 LARRIRGE 119
LARRIRG+
Sbjct: 83 LARRIRGQ 90
>pdb|2YFV|A Chain A, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3,
Cse4 And H4
Length = 100
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 55 RLVREIAQDFKTD---MRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQ 111
RLV+E+ F T+ +R+ GL E TNL A+HAKR+TIM KD+Q
Sbjct: 35 RLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQ 94
Query: 112 LARRIR 117
LARRIR
Sbjct: 95 LARRIR 100
>pdb|3AN2|A Chain A, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|E Chain E, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
Length = 143
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 21 LATKAARKVRSSNGRSEETTPFQAGNSGLERDL--KRLVREIAQDFK--TDMRFXXXXXX 76
L + + R G +E Q L R L RL REI F D +
Sbjct: 36 LGASSHQHSRRRQGWLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALL 95
Query: 77 XXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 118
LFED L +HA RVT+ PKD+QLARRIRG
Sbjct: 96 ALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 137
>pdb|3NQU|A Chain A, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2
HETEROTETRAMER
Length = 140
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 21 LATKAARKVRSSNGRSEETTPFQAGNSGLERDL--KRLVREIAQDFK--TDMRFXXXXXX 76
L + + R G +E Q L R L RL REI F D +
Sbjct: 33 LGASSHQHSRRRQGWLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALL 92
Query: 77 XXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 118
LFED L +HA RVT+ PKD+QLARRIRG
Sbjct: 93 ALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 134
>pdb|3R45|A Chain A, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex
With Chaperone Hjurp
Length = 156
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 21 LATKAARKVRSSNGRSEETTPFQAGNSGLERDL--KRLVREIAQDFK--TDMRFXXXXXX 76
L + + R G +E Q L R L RL REI F D +
Sbjct: 49 LGASSHQHSRRRQGWLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALL 108
Query: 77 XXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 118
LFED L +HA RVT+ PKD+QLARRIRG
Sbjct: 109 ALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 150
>pdb|3NQJ|A Chain A, Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER
Length = 82
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 53 LKRLVREIAQDFK--TDMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIHAKRVTIMPKDI 110
RL REI F D + LFED L +HA RVT+ PKD+
Sbjct: 9 FSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDV 68
Query: 111 QLARRIRG 118
QLARRIRG
Sbjct: 69 QLARRIRG 76
>pdb|4FT4|P Chain P, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|Q Chain Q, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 32
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/27 (92%), Positives = 25/27 (92%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARK 28
AR KQTAR STGGKAPRKQLATKAARK
Sbjct: 1 ARTKQTARXSTGGKAPRKQLATKAARK 27
>pdb|4HSU|C Chain C, Crystal Structure Of Lsd2-npac With H3(1-26)in Space
Group P21
Length = 30
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/27 (92%), Positives = 25/27 (92%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARK 28
AR QTARKSTGGKAPRKQLATKAARK
Sbjct: 1 ARTMQTARKSTGGKAPRKQLATKAARK 27
>pdb|3N9P|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2
Peptide And Nog
pdb|3N9P|C Chain C, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2
Peptide And Nog
Length = 32
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/26 (92%), Positives = 24/26 (92%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAAR 27
AR QTARKSTGGKAPRKQLATKAAR
Sbjct: 1 ARTXQTARKSTGGKAPRKQLATKAAR 26
>pdb|3N9N|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2
Peptide And Nog
pdb|3N9N|C Chain C, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2
Peptide And Nog
Length = 32
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/27 (88%), Positives = 24/27 (88%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARK 28
AR QTAR STGGKAPRKQLATKAARK
Sbjct: 1 ARTXQTARXSTGGKAPRKQLATKAARK 27
>pdb|4GU0|E Chain E, Crystal Structure Of Lsd2 With H3
pdb|4GU0|F Chain F, Crystal Structure Of Lsd2 With H3
Length = 26
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/26 (92%), Positives = 24/26 (92%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAAR 27
AR QTARKSTGGKAPRKQLATKAAR
Sbjct: 1 ARTMQTARKSTGGKAPRKQLATKAAR 26
>pdb|3A1B|A Chain A, Crystal Structure Of The Dnmt3a Add Domain In Complex
With Histone H3
Length = 159
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 12/77 (15%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGN-----------SGLE 50
AR KQTARKSTGGKAPRKQL + +VR R+ E G+ G+
Sbjct: 1 ARTKQTARKSTGGKAPRKQLRERLVYEVRQK-CRNIEDICISCGSLNVTLEHPLFVGGMC 59
Query: 51 RDLKRLVREIAQDFKTD 67
++ K E A + D
Sbjct: 60 QNCKNCFLECAYQYDDD 76
>pdb|3U5P|I Chain I, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|J Chain J, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|K Chain K, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|L Chain L, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|M Chain M, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|N Chain N, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|O Chain O, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|P Chain P, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 28
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/27 (81%), Positives = 22/27 (81%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKAARK 28
AR KQTAR STGG APR QLAT AARK
Sbjct: 1 ARTKQTARXSTGGXAPRXQLATXAARK 27
>pdb|3KV4|B Chain B, Structure Of Phf8 In Complex With Histone H3
Length = 24
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 21/24 (87%)
Query: 2 ARMKQTARKSTGGKAPRKQLATKA 25
AR QTAR STGGKAPRKQLATKA
Sbjct: 1 ARTXQTARXSTGGKAPRKQLATKA 24
>pdb|2KFT|B Chain B, Nmr Solution Structure Of The First Phd Finger Domain Of
Human Autoimmune Regulator (Aire) In Complex With
Histone H3(1-20cys) Peptide
Length = 21
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/21 (90%), Positives = 19/21 (90%)
Query: 2 ARMKQTARKSTGGKAPRKQLA 22
AR KQTARKSTGGKAPRKQL
Sbjct: 1 ARTKQTARKSTGGKAPRKQLC 21
>pdb|2KWK|B Chain B, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3b Bound To A H3 Peptide
Wild Type
Length = 20
Score = 38.5 bits (88), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/20 (95%), Positives = 19/20 (95%)
Query: 2 ARMKQTARKSTGGKAPRKQL 21
AR KQTARKSTGGKAPRKQL
Sbjct: 1 ARTKQTARKSTGGKAPRKQL 20
>pdb|2UXN|E Chain E, Structural Basis Of Histone Demethylation By Lsd1
Revealed By Suicide Inactivation
Length = 21
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/21 (90%), Positives = 19/21 (90%)
Query: 2 ARMKQTARKSTGGKAPRKQLA 22
AR QTARKSTGGKAPRKQLA
Sbjct: 1 ARTXQTARKSTGGKAPRKQLA 21
>pdb|2V1D|C Chain C, Structural Basis Of Lsd1-Corest Selectivity In Histone
H3 Recognition
pdb|4GUR|C Chain C, Crystal Structure Of Lsd2-npac With H3 In Space Group
P21
pdb|4GUS|C Chain C, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
Length = 21
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/21 (90%), Positives = 19/21 (90%)
Query: 2 ARMKQTARKSTGGKAPRKQLA 22
AR QTARKSTGGKAPRKQLA
Sbjct: 1 ARTMQTARKSTGGKAPRKQLA 21
>pdb|1PU9|B Chain B, Crystal Structure Of Tetrahymena Gcn5 With Bound
Coenzyme A And A 19-Residue Histone H3 Peptide
Length = 19
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/19 (94%), Positives = 19/19 (100%)
Query: 6 QTARKSTGGKAPRKQLATK 24
QTARKSTGGKAPRKQLA+K
Sbjct: 1 QTARKSTGGKAPRKQLASK 19
>pdb|1M1D|B Chain B, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
pdb|1M1D|D Chain D, Tetrahymena Gcn5 With Bound Bisubstrate Analog Inhibitor
pdb|2KTB|A Chain A, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone
3
pdb|2KWJ|B Chain B, Solution Structures Of The Double Phd Fingers Of Human
Transcriptional Protein Dpf3 Bound To A Histone Peptide
Containing Acetylation At Lysine 14
Length = 20
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 18/20 (90%)
Query: 2 ARMKQTARKSTGGKAPRKQL 21
AR KQTARKSTGG APRKQL
Sbjct: 1 ARTKQTARKSTGGXAPRKQL 20
>pdb|2YBA|C Chain C, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|D Chain D, Crystal Structure Of Nurf55 In Complex With Histone H3
Length = 19
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/19 (94%), Positives = 18/19 (94%)
Query: 2 ARMKQTARKSTGGKAPRKQ 20
AR KQTARKSTGGKAPRKQ
Sbjct: 1 ARTKQTARKSTGGKAPRKQ 19
>pdb|3U5O|I Chain I, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|J Chain J, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|K Chain K, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|L Chain L, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|M Chain M, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|N Chain N, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|O Chain O, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|P Chain P, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
Length = 22
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/22 (81%), Positives = 18/22 (81%)
Query: 2 ARMKQTARKSTGGKAPRKQLAT 23
AR KQTAR STGG APR QLAT
Sbjct: 1 ARTKQTARXSTGGXAPRXQLAT 22
>pdb|4FWF|E Chain E, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
Length = 20
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 18/20 (90%)
Query: 2 ARMKQTARKSTGGKAPRKQL 21
AR QTARKSTGGKAPRKQL
Sbjct: 1 ARTMQTARKSTGGKAPRKQL 20
>pdb|1PUA|B Chain B, Crystal Structure Of Tetrahymena Gcn5 With Bound
Coenzyme A And A Phosphorylated, 19-Residue Histone H3
Peptide
Length = 19
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/19 (89%), Positives = 18/19 (94%)
Query: 6 QTARKSTGGKAPRKQLATK 24
QTARK TGGKAPRKQLA+K
Sbjct: 1 QTARKXTGGKAPRKQLASK 19
>pdb|2B2W|D Chain D, Tandem Chromodomains Of Human Chd1 Complexed With
Histone H3 Tail Containing Trimethyllysine 4
Length = 20
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 17/20 (85%)
Query: 2 ARMKQTARKSTGGKAPRKQL 21
AR QTARKSTGGKAPRKQ
Sbjct: 1 ARTXQTARKSTGGKAPRKQY 20
>pdb|2B2T|D Chain D, Tandem Chromodomains Of Human Chd1 Complexed With
Histone H3 Tail Containing Trimethyllysine 4 And
Phosphothreonine 3
Length = 20
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 17/20 (85%)
Query: 2 ARMKQTARKSTGGKAPRKQL 21
AR QTARKSTGGKAPRKQ
Sbjct: 1 ARXXQTARKSTGGKAPRKQY 20
>pdb|3U5N|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
Length = 20
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 17/20 (85%)
Query: 2 ARMKQTARKSTGGKAPRKQL 21
AR KQTAR STGG APRKQL
Sbjct: 1 ARTKQTARXSTGGXAPRKQL 20
>pdb|3V43|Q Chain Q, Crystal Structure Of Moz
Length = 18
Score = 32.7 bits (73), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 16/18 (88%), Positives = 16/18 (88%)
Query: 2 ARMKQTARKSTGGKAPRK 19
AR KQTARKSTGG APRK
Sbjct: 1 ARTKQTARKSTGGXAPRK 18
>pdb|2LY8|A Chain A, The Budding Yeast Chaperone Scm3 Recognizes The
Partially Unfolded Dimer Of The Centromere-specific
Cse4/h4 Histone Variant
Length = 121
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 55 RLVREIAQDFKT---DMRFXXXXXXXXXXXXXXXXXGLFEDTNLCAIH 99
RLV+E+ +F T D+R+ GL E TNL A+H
Sbjct: 9 RLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALH 56
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain
Histone Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain
Histone Chimera
Length = 361
Score = 32.3 bits (72), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 7 TARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAG 45
TARKSTGG APRK RK+ + G S+E + G
Sbjct: 7 TARKSTGGXAPRKGGMVVKKRKLATEAGGSDERPKYLPG 45
>pdb|2IIJ|B Chain B, Structure Of Human Asf1a In Complex With Histone H3
Length = 18
Score = 32.0 bits (71), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 106 MPKDIQLARRIRGERA 121
M KDIQLARRIRGERA
Sbjct: 3 MGKDIQLARRIRGERA 18
>pdb|2RSN|B Chain B, Solution Structure Of The Chromodomain Of Chp1 In
Complex With H3k9me3 Peptide
Length = 18
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/17 (88%), Positives = 15/17 (88%)
Query: 2 ARMKQTARKSTGGKAPR 18
AR KQTAR STGGKAPR
Sbjct: 1 ARTKQTARXSTGGKAPR 17
>pdb|3N9O|C Chain C, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|4GY5|E Chain E, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|F Chain F, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 17
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/17 (88%), Positives = 15/17 (88%)
Query: 2 ARMKQTARKSTGGKAPR 18
AR KQTAR STGGKAPR
Sbjct: 1 ARTKQTARXSTGGKAPR 17
>pdb|2VPG|P Chain P, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
pdb|2VPG|R Chain R, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 18
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/18 (83%), Positives = 15/18 (83%)
Query: 2 ARMKQTARKSTGGKAPRK 19
A QTARKSTGGKAPRK
Sbjct: 1 AXTXQTARKSTGGKAPRK 18
>pdb|2G46|C Chain C, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
pdb|2G46|D Chain D, Structure Of Vset In Complex With Mek27 H3 Pept. And
Cofactor Product Sah
Length = 21
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 14 GKAPRKQLATKAARKVRSSNG 34
GKAPRKQLATKAAR + G
Sbjct: 1 GKAPRKQLATKAARXSAPATG 21
>pdb|2X0L|C Chain C, Crystal Structure Of A Neuro-Specific Splicing Variant
Of Human Histone Lysine Demethylase Lsd1
Length = 16
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 14/16 (87%), Positives = 14/16 (87%)
Query: 2 ARMKQTARKSTGGKAP 17
AR QTARKSTGGKAP
Sbjct: 1 ARTMQTARKSTGGKAP 16
>pdb|3O34|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
Length = 22
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 14 GKAPRKQLATKAARK 28
GKAPRKQLAT AARK
Sbjct: 1 GKAPRKQLATXAARK 15
>pdb|4A7J|B Chain B, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 16
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/16 (87%), Positives = 14/16 (87%)
Query: 1 MARMKQTARKSTGGKA 16
MA KQTARKSTGGKA
Sbjct: 1 MAXTKQTARKSTGGKA 16
>pdb|1PEG|P Chain P, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|Q Chain Q, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|2CO0|B Chain B, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
pdb|2CO0|D Chain D, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
pdb|3QLC|C Chain C, Complex Structure Of Atrx Add Domain Bound To Unmodified
H3 1-15 Peptide
pdb|3QLC|D Chain D, Complex Structure Of Atrx Add Domain Bound To Unmodified
H3 1-15 Peptide
pdb|4GNF|C Chain C, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3 Peptide 1-15
Length = 15
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 2 ARMKQTARKSTGGKA 16
AR KQTARKSTGGKA
Sbjct: 1 ARTKQTARKSTGGKA 15
>pdb|3UIG|P Chain P, Crystal Structure Of Human Survivin In Complex With T3
Phosphorylated H3(1-15) Peptide
pdb|3UIG|Q Chain Q, Crystal Structure Of Human Survivin In Complex With T3
Phosphorylated H3(1-15) Peptide
Length = 15
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/15 (93%), Positives = 14/15 (93%)
Query: 2 ARMKQTARKSTGGKA 16
AR KQTARKSTGGKA
Sbjct: 1 ARXKQTARKSTGGKA 15
>pdb|1GUW|B Chain B, Structure Of The Chromodomain From Mouse Hp1beta In
Complex With The Lysine 9-Methyl Histone H3 N-Terminal
Peptide, Nmr, 25 Structures
Length = 18
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 13/16 (81%)
Query: 2 ARMKQTARKSTGGKAP 17
AR QTAR STGGKAP
Sbjct: 1 ARTXQTARXSTGGKAP 16
>pdb|3ZV0|C Chain C, Structure Of The Shq1p-Cbf5p Complex
pdb|3ZV0|D Chain D, Structure Of The Shq1p-Cbf5p Complex
Length = 195
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 35 RSEETTPFQAGNSGLERDLKRLV 57
RS TP AG+S L+RDLK +
Sbjct: 41 RSGHYTPIPAGSSPLKRDLKSYI 63
>pdb|3Q33|D Chain D, Structure Of The Rtt109-AccoaVPS75 COMPLEX AND
IMPLICATIONS FOR Chaperone-Mediated Histone Acetylation
Length = 15
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 2 ARMKQTARKSTGGK 15
AR KQTARKSTGGK
Sbjct: 1 ARTKQTARKSTGGK 14
>pdb|2B2V|D Chain D, Crystal Structure Analysis Of Human Chd1 Chromodomains 1
And 2 Bound To Histone H3 Resi 1-15 Mek4
Length = 16
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 13/15 (86%)
Query: 2 ARMKQTARKSTGGKA 16
AR QTARKSTGGKA
Sbjct: 1 ARTXQTARKSTGGKA 15
>pdb|1KNA|P Chain P, Chromo Domain Of Hp1 Complexed With Histone H3 Tail
Containing Dimethyllysine 9.
pdb|1KNE|P Chain P, Chromo Domain Of Hp1 Complexed With Histone H3 Tail
Containing Trimethyllysine 9
pdb|1Q3L|P Chain P, Chromodomain Of Hp1 Complexed With Histone H3 Tail
Containing Monomethyllysine 9.
pdb|3G7L|P Chain P, Chromodomain Of Chp1 In Complex With Histone H3k9me3
Peptide
Length = 16
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 13/15 (86%)
Query: 2 ARMKQTARKSTGGKA 16
AR KQTAR STGGKA
Sbjct: 1 ARTKQTARXSTGGKA 15
>pdb|2Q8C|F Chain F, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8C|G Chain G, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|3B95|P Chain P, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|2RNW|B Chain B, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|3FDT|T Chain T, Crystal Structure Of The Complex Of Human Chromobox
Homolog 5 (Cbx5) With H3k9(Me)3 Peptide
pdb|3GV6|B Chain B, Crystal Structure Of Human Chromobox Homolog 6 (Cbx6)
With H3k9 Peptide
pdb|2L11|B Chain B, Solution Nmr Structure Of The Cbx3 In Complex With
H3k9me3 Peptide
pdb|2L12|B Chain B, Solution Nmr Structure Of The Chromobox Protein 7 With
H3k9me3
pdb|3QO2|P Chain P, Structural Insights For Mpp8 Chromodomain Interaction
With Histone H3 Lysine 9
pdb|3QO2|Q Chain Q, Structural Insights For Mpp8 Chromodomain Interaction
With Histone H3 Lysine 9
pdb|3QO2|R Chain R, Structural Insights For Mpp8 Chromodomain Interaction
With Histone H3 Lysine 9
pdb|3QO2|S Chain S, Structural Insights For Mpp8 Chromodomain Interaction
With Histone H3 Lysine 9
pdb|3R93|E Chain E, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|F Chain F, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|G Chain G, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|3R93|H Chain H, Crystal Structure Of The Chromo Domain Of M-Phase
Phosphoprotein 8 Bound To H3k9me3 Peptide
pdb|2LBM|C Chain C, Solution Structure Of The Add Domain Of Atrx Complexed
With Histone Tail H3 1-15 K9me3
pdb|3QL9|C Chain C, Monoclinic Complex Structure Of Atrx Add Bound To
Histone H3k9me3 Peptide
pdb|3QLA|C Chain C, Hexagonal Complex Structure Of Atrx Add Bound To H3k9me3
Peptide
pdb|3QLA|F Chain F, Hexagonal Complex Structure Of Atrx Add Bound To H3k9me3
Peptide
pdb|4FT2|P Chain P, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4GNG|B Chain B, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
pdb|4GNG|F Chain F, Crystal Structure Of Nsd3 Tandem Phd5-C5hch Domains
Complexed With H3k9me3 Peptide
Length = 15
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 13/15 (86%)
Query: 2 ARMKQTARKSTGGKA 16
AR KQTAR STGGKA
Sbjct: 1 ARTKQTARXSTGGKA 15
>pdb|2F6J|P Chain P, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2FSA|P Chain P, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FUU|B Chain B, Nmr Solution Structure Of The Phd Domain From The Human
Bptf In Complex With H3(1-15)k4me3 Peptide
pdb|3N9L|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9O|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9Q|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
Length = 15
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/15 (86%), Positives = 13/15 (86%)
Query: 2 ARMKQTARKSTGGKA 16
AR QTARKSTGGKA
Sbjct: 1 ARTXQTARKSTGGKA 15
>pdb|2R0Y|B Chain B, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 13
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/13 (92%), Positives = 12/13 (92%)
Query: 7 TARKSTGGKAPRK 19
TARKSTGG APRK
Sbjct: 1 TARKSTGGXAPRK 13
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 3 RMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLE-RDLKRLVREIA 61
R+ Q A + +GG+A R +LAT+ R +GR +GL D++RL R++
Sbjct: 723 RLGQPATELSGGEAQRIKLATELRR-----SGRGGTVYVLDEPTTGLHPADVERLQRQLV 777
Query: 62 Q 62
+
Sbjct: 778 K 778
>pdb|3U28|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
pdb|3UAI|A Chain A, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
Length = 400
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 35 RSEETTPFQAGNSGLERDLKRLV 57
RS TP AG+S L+RDLK +
Sbjct: 35 RSGHYTPIPAGSSPLKRDLKSYI 57
>pdb|1PDQ|B Chain B, Polycomb Chromodomain Complexed With The Histone H3 Tail
Containing Trimethyllysine 27
Length = 18
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/12 (100%), Positives = 12/12 (100%)
Query: 16 APRKQLATKAAR 27
APRKQLATKAAR
Sbjct: 1 APRKQLATKAAR 12
>pdb|4F56|C Chain C, The Bicyclic Intermediate Structure Provides Insights
Into The Desuccinylation Mechanism Of Sirt5
pdb|4F56|D Chain D, The Bicyclic Intermediate Structure Provides Insights
Into The Desuccinylation Mechanism Of Sirt5
Length = 12
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/12 (100%), Positives = 12/12 (100%)
Query: 5 KQTARKSTGGKA 16
KQTARKSTGGKA
Sbjct: 1 KQTARKSTGGKA 12
>pdb|2KVM|B Chain B, Solution Structure Of The Cbx7 Chromodomain In Complex
With A H3k27me2 Peptide
Length = 16
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/12 (100%), Positives = 12/12 (100%)
Query: 16 APRKQLATKAAR 27
APRKQLATKAAR
Sbjct: 1 APRKQLATKAAR 12
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.130 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,602,630
Number of Sequences: 62578
Number of extensions: 68004
Number of successful extensions: 298
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 97
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)