Query 048641
Match_columns 121
No_of_seqs 125 out of 568
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 11:32:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00018 histone H3; Provision 100.0 3.9E-51 8.5E-56 300.6 8.8 120 1-120 1-135 (136)
2 PLN00121 histone H3; Provision 100.0 4.9E-51 1.1E-55 300.1 8.6 120 1-120 1-135 (136)
3 PLN00161 histone H3; Provision 100.0 1.8E-49 3.9E-54 291.1 8.2 113 1-120 1-129 (135)
4 KOG1745 Histones H3 and H4 [Ch 100.0 1E-48 2.2E-53 287.4 6.8 121 1-121 1-137 (137)
5 smart00428 H3 Histone H3. 100.0 8.6E-41 1.9E-45 236.8 7.3 87 34-120 1-104 (105)
6 PLN00160 histone H3; Provision 100.0 3.3E-40 7.1E-45 230.9 6.2 84 37-120 9-95 (97)
7 COG2036 HHT1 Histones H3 and H 99.8 2.1E-20 4.5E-25 129.7 5.1 83 33-120 3-87 (91)
8 PF00125 Histone: Core histone 99.8 2E-19 4.3E-24 117.9 6.3 66 52-117 10-75 (75)
9 cd07981 TAF12 TATA Binding Pro 99.3 6.7E-12 1.5E-16 83.1 6.2 59 57-115 7-65 (72)
10 PLN00158 histone H2B; Provisio 98.7 4.1E-08 9E-13 70.9 7.3 66 52-117 28-93 (116)
11 PTZ00463 histone H2B; Provisio 98.6 1.6E-07 3.4E-12 67.9 7.2 66 52-117 29-94 (117)
12 smart00427 H2B Histone H2B. 98.6 2.6E-07 5.7E-12 64.0 6.6 66 52-117 2-67 (89)
13 smart00803 TAF TATA box bindin 98.4 5.5E-07 1.2E-11 58.7 5.0 59 56-115 7-65 (65)
14 PF00808 CBFD_NFYB_HMF: Histon 98.4 9.3E-07 2E-11 56.6 5.6 58 57-114 8-65 (65)
15 cd07979 TAF9 TATA Binding Prot 98.3 1.5E-06 3.2E-11 62.5 6.4 66 53-119 3-68 (117)
16 KOG1744 Histone H2B [Chromatin 98.2 2.7E-06 5.9E-11 62.3 5.8 66 52-117 38-103 (127)
17 cd00076 H4 Histone H4, one of 98.2 2.3E-06 4.9E-11 58.8 5.0 64 52-120 18-81 (85)
18 PLN00035 histone H4; Provision 98.2 2.9E-06 6.2E-11 60.3 5.1 63 52-119 34-96 (103)
19 PTZ00015 histone H4; Provision 98.1 6.9E-06 1.5E-10 58.2 5.1 63 52-119 35-97 (102)
20 PF15630 CENP-S: Kinetochore c 98.1 7.7E-06 1.7E-10 55.0 4.6 61 55-115 9-71 (76)
21 PF03847 TFIID_20kDa: Transcri 97.7 0.00012 2.6E-09 48.3 5.5 59 57-115 5-63 (68)
22 smart00576 BTP Bromodomain tra 97.7 0.00023 5E-09 47.2 6.7 51 69-119 23-73 (77)
23 smart00417 H4 Histone H4. 97.6 5.1E-05 1.1E-09 50.9 2.9 56 52-112 18-73 (74)
24 PF02291 TFIID-31kDa: Transcri 97.5 0.00029 6.3E-09 51.7 6.2 65 54-119 15-79 (129)
25 PF02969 TAF: TATA box binding 97.5 0.00036 7.7E-09 45.8 5.8 60 55-115 7-66 (66)
26 cd08050 TAF6 TATA Binding Prot 97.5 0.00034 7.4E-09 58.0 6.4 64 55-119 3-66 (343)
27 PF15511 CENP-T: Centromere ki 97.4 0.00021 4.6E-09 60.8 5.0 56 54-109 354-414 (414)
28 KOG0870 DNA polymerase epsilon 97.3 0.00039 8.5E-09 53.2 5.0 61 53-115 16-76 (172)
29 KOG1142 Transcription initiati 96.6 0.0023 5E-08 51.9 3.8 63 52-114 155-217 (258)
30 cd00074 H2A Histone 2A; H2A is 96.5 0.014 3E-07 42.1 7.0 63 52-115 22-84 (115)
31 KOG3334 Transcription initiati 95.7 0.044 9.5E-07 41.2 6.3 65 55-120 17-81 (148)
32 PF07524 Bromo_TP: Bromodomain 95.0 0.066 1.4E-06 35.1 4.9 53 67-119 20-73 (77)
33 KOG3467 Histone H4 [Chromatin 89.7 0.69 1.5E-05 32.4 4.2 51 69-119 46-96 (103)
34 COG5262 HTA1 Histone H2A [Chro 88.3 0.76 1.7E-05 33.7 3.8 65 52-119 28-92 (132)
35 PF02269 TFIID-18kDa: Transcri 87.7 0.42 9.2E-06 32.9 2.1 59 57-115 7-65 (93)
36 KOG0869 CCAAT-binding factor, 85.9 2.7 5.9E-05 32.2 5.7 66 52-118 34-100 (168)
37 KOG2549 Transcription initiati 82.0 3.7 8.1E-05 36.9 5.8 64 54-118 14-77 (576)
38 cd08045 TAF4 TATA Binding Prot 81.6 4 8.6E-05 31.6 5.3 53 48-101 44-97 (212)
39 PF05236 TAF4: Transcription i 81.4 2 4.4E-05 34.2 3.7 58 45-103 40-98 (264)
40 smart00414 H2A Histone 2A. 78.9 3.9 8.5E-05 29.0 4.0 49 67-115 25-73 (106)
41 COG5094 TAF9 Transcription ini 78.2 3.6 7.8E-05 30.6 3.8 61 55-116 18-81 (145)
42 PLN00154 histone H2A; Provisio 77.1 13 0.00028 27.7 6.5 49 67-115 55-103 (136)
43 cd07978 TAF13 The TATA Binding 75.9 14 0.00031 25.3 6.1 62 53-115 4-65 (92)
44 PTZ00017 histone H2A; Provisio 74.9 4.4 9.6E-05 30.1 3.5 63 52-115 29-91 (134)
45 KOG2389 Predicted bromodomain 74.3 8.5 0.00018 32.8 5.5 61 57-118 35-95 (353)
46 KOG4336 TBP-associated transcr 73.0 9.7 0.00021 32.0 5.4 54 66-119 16-72 (323)
47 KOG0871 Class 2 transcription 72.3 13 0.00028 28.2 5.5 62 54-118 19-80 (156)
48 PLN00156 histone H2AX; Provisi 71.9 13 0.00029 27.7 5.5 63 52-115 31-93 (139)
49 PF09123 DUF1931: Domain of un 67.1 12 0.00025 28.0 4.3 60 53-117 1-60 (138)
50 KOG1658 DNA polymerase epsilon 64.5 5.2 0.00011 30.6 2.0 60 52-113 61-121 (162)
51 PLN00157 histone H2A; Provisio 64.3 8.7 0.00019 28.5 3.1 63 52-115 28-90 (132)
52 KOG1756 Histone 2A [Chromatin 61.4 16 0.00034 27.1 4.0 63 52-115 29-91 (131)
53 PLN00153 histone H2A; Provisio 61.3 32 0.0007 25.4 5.7 63 52-115 26-88 (129)
54 COG5248 TAF19 Transcription in 59.1 43 0.00094 24.4 5.9 62 52-115 10-71 (126)
55 KOG3901 Transcription initiati 50.2 79 0.0017 22.7 6.0 61 52-115 10-70 (109)
56 PTZ00252 histone H2A; Provisio 46.5 69 0.0015 23.8 5.4 63 52-115 27-91 (134)
57 COG5095 TAF6 Transcription ini 44.3 39 0.00085 29.1 4.3 61 57-118 11-71 (450)
58 COG5150 Class 2 transcription 43.1 68 0.0015 24.0 4.9 60 52-114 16-75 (148)
59 PRK07452 DNA polymerase III su 39.3 69 0.0015 25.5 4.9 59 54-114 136-196 (326)
60 KOG1757 Histone 2A [Chromatin 38.3 63 0.0014 23.6 4.0 66 52-119 32-97 (131)
61 PF13581 HATPase_c_2: Histidin 35.7 96 0.0021 20.7 4.5 43 55-97 9-51 (125)
62 PRK14562 haloacid dehalogenase 34.4 55 0.0012 25.3 3.5 26 65-90 70-95 (204)
63 PHA03159 hypothetical protein; 34.3 93 0.002 23.4 4.5 48 52-99 5-54 (160)
64 TIGR02902 spore_lonB ATP-depen 33.1 98 0.0021 27.2 5.2 58 57-114 268-329 (531)
65 PF13654 AAA_32: AAA domain; P 31.4 1.8E+02 0.004 25.7 6.6 65 52-117 431-506 (509)
66 PF10911 DUF2717: Protein of u 30.3 94 0.002 21.1 3.6 43 54-96 19-64 (77)
67 PF04604 L_biotic_typeA: Type- 29.7 49 0.0011 20.7 2.0 20 73-92 7-26 (51)
68 PF07105 DUF1367: Protein of u 29.1 87 0.0019 24.7 3.7 16 76-91 91-106 (196)
69 TIGR01924 rsbW_low_gc serine-p 27.3 1.5E+02 0.0033 21.5 4.6 43 52-94 17-59 (159)
70 PF05258 DUF721: Protein of un 26.7 1.5E+02 0.0032 18.5 4.1 63 52-117 1-65 (89)
71 TIGR00764 lon_rel lon-related 23.3 3.1E+02 0.0066 24.7 6.6 49 68-116 329-390 (608)
72 cd00913 PCD_DCoH_subfamily_a P 22.7 41 0.00089 21.8 0.8 12 105-116 62-73 (76)
73 COG1224 TIP49 DNA helicase TIP 22.5 1.9E+02 0.004 25.5 4.8 66 52-117 360-432 (450)
74 PF06075 DUF936: Plant protein 22.0 1.1E+02 0.0024 27.7 3.6 54 41-97 310-368 (579)
75 PF07278 DUF1441: Protein of u 21.9 3E+02 0.0065 20.8 5.4 43 52-94 98-147 (152)
76 COG5304 Uncharacterized protei 21.7 66 0.0014 22.5 1.7 14 52-65 76-89 (92)
77 PRK08487 DNA polymerase III su 21.0 2.3E+02 0.005 22.9 5.0 57 54-114 141-197 (328)
78 COG5624 TAF61 Transcription in 20.9 36 0.00078 30.0 0.2 57 57-113 389-446 (505)
79 PF09415 CENP-X: CENP-S associ 20.4 1.2E+02 0.0025 19.9 2.6 57 55-111 3-62 (72)
80 PRK04069 serine-protein kinase 20.2 2.5E+02 0.0055 20.2 4.6 43 52-94 17-59 (161)
81 KOG2680 DNA helicase TIP49, TB 20.1 2.9E+02 0.0063 24.0 5.5 66 52-117 357-429 (454)
82 PRK05907 hypothetical protein; 20.0 1.8E+02 0.004 23.8 4.2 61 53-113 136-199 (311)
No 1
>PTZ00018 histone H3; Provisional
Probab=100.00 E-value=3.9e-51 Score=300.64 Aligned_cols=120 Identities=78% Similarity=1.073 Sum_probs=115.6
Q ss_pred CCCccccccccCCCCCCchhhhhhhhhhccCCCCCCCCcccCCCCCCCcC-------------C--chHHHHHHHHHhhh
Q 048641 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLE-------------R--DLKRLVREIAQDFK 65 (121)
Q Consensus 1 MartK~~a~kstg~kaprk~~~~k~~~ks~p~~~~~kk~~r~rpgt~alr-------------r--pF~RLVreI~~~~~ 65 (121)
|||||+++++++|+++|++++++++++++.+.+++.++++||+|||+||+ + ||+||||||+++|.
T Consensus 1 MaRtk~~~~k~~~~~~prk~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~ 80 (136)
T PTZ00018 1 MARTKQTARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_pred CCCCCcCccCCCCCCCCcccccccccccCCCCCCCCCCCcccCCchhHHHHHHHHcccchhccccccHHHHHHHHHHHcC
Confidence 99999999999999999999998888888888889999999999999998 3 99999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccC
Q 048641 66 TDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 120 (121)
Q Consensus 66 ~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~ 120 (121)
+++|||++||+|||||+|+|||+||||+|+||+||||||||++||||++||||+.
T Consensus 81 ~~~rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~~ 135 (136)
T PTZ00018 81 TDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
T ss_pred CcceeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHhcccC
Confidence 9999999999999999999999999999999999999999999999999999985
No 2
>PLN00121 histone H3; Provisional
Probab=100.00 E-value=4.9e-51 Score=300.11 Aligned_cols=120 Identities=79% Similarity=1.083 Sum_probs=115.9
Q ss_pred CCCccccccccCCCCCCchhhhhhhhhhccCCCCCCCCcccCCCCCCCcC-------------C--chHHHHHHHHHhhh
Q 048641 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLE-------------R--DLKRLVREIAQDFK 65 (121)
Q Consensus 1 MartK~~a~kstg~kaprk~~~~k~~~ks~p~~~~~kk~~r~rpgt~alr-------------r--pF~RLVreI~~~~~ 65 (121)
|||||+++++++|+++|++++++++.+++.+..++.++++||+|||+||+ + ||+||||||+++|.
T Consensus 1 MaRtk~~~~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~ 80 (136)
T PLN00121 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_pred CCCCCcCccCCCCCCCCcccccccccccCCCCCCCCCCCcccCchhHHHHHHHHhccccccccccccHHHHHHHHHHHhC
Confidence 99999999999999999999999888888888889999999999999998 3 99999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccC
Q 048641 66 TDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 120 (121)
Q Consensus 66 ~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~ 120 (121)
+++|||++||+|||||+|+|||+||||+|+||+||||||||++||+|+++|||+.
T Consensus 81 ~~~Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~~ 135 (136)
T PLN00121 81 TDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 135 (136)
T ss_pred ccceeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999999986
No 3
>PLN00161 histone H3; Provisional
Probab=100.00 E-value=1.8e-49 Score=291.10 Aligned_cols=113 Identities=49% Similarity=0.741 Sum_probs=104.3
Q ss_pred CCCccccccccCCCCCCchhhhhhhhhhccCCCCCCCCcccCCCCCCCcC-------------C--chHHHHHHHHHhhh
Q 048641 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLE-------------R--DLKRLVREIAQDFK 65 (121)
Q Consensus 1 MartK~~a~kstg~kaprk~~~~k~~~ks~p~~~~~kk~~r~rpgt~alr-------------r--pF~RLVreI~~~~~ 65 (121)
||||||+ +++++||.|+|.+..+ ...+++++||||+|||+||+ + ||+||||||++++.
T Consensus 1 mar~k~~-~~~~~~~~~~~~~~~~------~~~~~~kk~~r~rpGtvaLrEIR~yQkst~lLIpklPF~RLVREI~~~~~ 73 (135)
T PLN00161 1 MARRLQG-KRFRKGKKPQKEASGV------TRQELDKKPHRYRPGTVALREIRKYQKSTELLIRKLPFARLVREISNEML 73 (135)
T ss_pred CCccccc-ccccCCCCCcccCCCC------CCCCCCCCCccCCCcchHHHHHHHHccccccccccccHHHHHHHHHHhcC
Confidence 9999999 7888999998887553 25577899999999999999 3 99999999999996
Q ss_pred -ccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccC
Q 048641 66 -TDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 120 (121)
Q Consensus 66 -~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~ 120 (121)
+++|||++||+|||||+|+|||+||||+|+||+||||||||++||+||++|||+.
T Consensus 74 ~~~~Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~rirg~~ 129 (135)
T PLN00161 74 REPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARRIRGPI 129 (135)
T ss_pred CCCcEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcccc
Confidence 5899999999999999999999999999999999999999999999999999974
No 4
>KOG1745 consensus Histones H3 and H4 [Chromatin structure and dynamics]
Probab=100.00 E-value=1e-48 Score=287.41 Aligned_cols=121 Identities=79% Similarity=1.087 Sum_probs=114.4
Q ss_pred CCCccccccccCCCCCCchhhhhhhhhhc-cCCCCCCCCcccCCCCCCCcC--------------C-chHHHHHHHHHhh
Q 048641 1 MARMKQTARKSTGGKAPRKQLATKAARKV-RSSNGRSEETTPFQAGNSGLE--------------R-DLKRLVREIAQDF 64 (121)
Q Consensus 1 MartK~~a~kstg~kaprk~~~~k~~~ks-~p~~~~~kk~~r~rpgt~alr--------------r-pF~RLVreI~~~~ 64 (121)
|+|+++++++++++++|++..+.++.++. .|..+.+++++||+||+++|+ + ||+||||||+|+|
T Consensus 1 m~r~~~t~~k~~~~~~~r~~~a~~~~~~~~~~~~~~~~k~~r~rpg~~al~eirkyQkstdLlI~K~PFqRlvrei~q~f 80 (137)
T KOG1745|consen 1 MARTKQTARKSTGGKAPRKQLAGKAARKSAAPRTGRVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDF 80 (137)
T ss_pred CCCCCcccccccCCCCCccccccccccccccccccccCccccccCchHHHHHHHHHHhhhHHHhhcCcHHHHhHHHHhcc
Confidence 89999999999999999999999888776 455678899999999999998 3 9999999999999
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccCC
Q 048641 65 KTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 121 (121)
Q Consensus 65 ~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~~ 121 (121)
.+|+|||+.||.|||||+|+|||+||||+|+||+|||||||||+|||||++|+|++.
T Consensus 81 ~~dLrfqs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTimpkdiQlArrirg~~~ 137 (137)
T KOG1745|consen 81 KTDLRFQSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 137 (137)
T ss_pred cccceehHHHHHHHHHHHHHHHHHhccccchhhhccceeEecccceehhhhcccCCC
Confidence 999999999999999999999999999999999999999999999999999999863
No 5
>smart00428 H3 Histone H3.
Probab=100.00 E-value=8.6e-41 Score=236.80 Aligned_cols=87 Identities=74% Similarity=1.047 Sum_probs=83.2
Q ss_pred CCCCCcccCCCCCCCcC-------------C--chHHHHHHHHHhhhc--cccchHHHHHHHHHHHHHHHHHHhhhhhHh
Q 048641 34 GRSEETTPFQAGNSGLE-------------R--DLKRLVREIAQDFKT--DMRFQSSAVAALQEAAEAYLVGLFEDTNLC 96 (121)
Q Consensus 34 ~~~kk~~r~rpgt~alr-------------r--pF~RLVreI~~~~~~--~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~ 96 (121)
+++++||||+|||+||+ + ||+||||||++++.+ ++|||++|++|||||+|+|||++|||+|+|
T Consensus 1 ~~~~~~~r~rpg~~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~ 80 (105)
T smart00428 1 GGKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLL 80 (105)
T ss_pred CCCCCCcCCCCcchHHHHHHHHccCcccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999 3 999999999999987 999999999999999999999999999999
Q ss_pred hhhcCccccCcccHHHHHHHhccC
Q 048641 97 AIHAKRVTIMPKDIQLARRIRGER 120 (121)
Q Consensus 97 a~hakRvTi~~kDi~la~rirg~~ 120 (121)
|+||||||||++||+||.+|||+.
T Consensus 81 a~HAkRvTl~~kDi~La~rir~~~ 104 (105)
T smart00428 81 AIHAKRVTIMPKDIQLARRIRGER 104 (105)
T ss_pred HHHhCCccCcHhhHHHHHHHhccC
Confidence 999999999999999999999985
No 6
>PLN00160 histone H3; Provisional
Probab=100.00 E-value=3.3e-40 Score=230.93 Aligned_cols=84 Identities=62% Similarity=0.880 Sum_probs=75.8
Q ss_pred CCcccCCCCCCCcCC--chHHHHHHHHHhhh-ccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHH
Q 048641 37 EETTPFQAGNSGLER--DLKRLVREIAQDFK-TDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 113 (121)
Q Consensus 37 kk~~r~rpgt~alrr--pF~RLVreI~~~~~-~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la 113 (121)
+..++|+.+|..|.+ ||+||||||++++. +++|||++||+|||||+|+|||++|||+|+||+||||||||++||||+
T Consensus 9 rEIR~yQkst~lLI~k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~ 88 (97)
T PLN00160 9 KEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLA 88 (97)
T ss_pred HHHHHHccchhhhhccccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHH
Confidence 455666666665555 99999999999996 569999999999999999999999999999999999999999999999
Q ss_pred HHHhccC
Q 048641 114 RRIRGER 120 (121)
Q Consensus 114 ~rirg~~ 120 (121)
++|||+.
T Consensus 89 ~rirg~~ 95 (97)
T PLN00160 89 RRIRGQT 95 (97)
T ss_pred HHhhccc
Confidence 9999974
No 7
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=99.81 E-value=2.1e-20 Score=129.68 Aligned_cols=83 Identities=36% Similarity=0.436 Sum_probs=75.7
Q ss_pred CCCCCCcccCCCCCCCcCC--chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccH
Q 048641 33 NGRSEETTPFQAGNSGLER--DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDI 110 (121)
Q Consensus 33 ~~~~kk~~r~rpgt~alrr--pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi 110 (121)
+.+.+..++|...+..+.+ ||+|++|+...+ ||+.+|+++||++.|.|++.++++++.||.|+||+||+++||
T Consensus 3 ~~~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~-----Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI 77 (91)
T COG2036 3 AVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-----RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDI 77 (91)
T ss_pred cchHHHHHhhhhhhhhhcCchHHHHHHHHHhHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHH
Confidence 4556778888888877776 999999999986 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccC
Q 048641 111 QLARRIRGER 120 (121)
Q Consensus 111 ~la~rirg~~ 120 (121)
+|+.+.+|..
T Consensus 78 ~la~~~~~~~ 87 (91)
T COG2036 78 KLALKRLGRR 87 (91)
T ss_pred HHHHHHhccc
Confidence 9999998853
No 8
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=99.79 E-value=2e-19 Score=117.95 Aligned_cols=66 Identities=45% Similarity=0.613 Sum_probs=64.3
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
||.|+++||..++..++||+++|+.+||+++|+|++.+||+|+.||.|+||+||+++|||+|.+++
T Consensus 10 ~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~~ 75 (75)
T PF00125_consen 10 PFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRID 75 (75)
T ss_dssp HHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred EEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence 999999999999888899999999999999999999999999999999999999999999999985
No 9
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=99.30 E-value=6.7e-12 Score=83.09 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=53.4
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
+.|.+.++.+..+++.+|.++||+.+|+|+.++++++..||.|++|.||.++||+|+..
T Consensus 7 l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~ 65 (72)
T cd07981 7 LQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLE 65 (72)
T ss_pred HHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 44555666677999999999999999999999999999999999999999999999864
No 10
>PLN00158 histone H2B; Provisional
Probab=98.75 E-value=4.1e-08 Score=70.88 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=64.5
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
.|..+|..|+.++++|+.+++.|+..|.....|++..+-.++..++.+.||.||.++|||.+.||.
T Consensus 28 sy~~YI~kVLKQVhPd~gIS~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLv 93 (116)
T PLN00158 28 TYKIYIYKVLKQVHPDTGISSKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLI 93 (116)
T ss_pred cHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999999999985
No 11
>PTZ00463 histone H2B; Provisional
Probab=98.62 E-value=1.6e-07 Score=67.94 Aligned_cols=66 Identities=11% Similarity=0.139 Sum_probs=64.6
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
.|..+|..++.++++|+.+++.|+..|.....|++..+-.++..++.+.||.||.++|||.+.||.
T Consensus 29 sy~~YI~KVLKqVhPd~gIS~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLl 94 (117)
T PTZ00463 29 SYGLYIFKVLKQVHPDTGISRKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLV 94 (117)
T ss_pred hHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhc
Confidence 899999999999999999999999999999999999999999999999999999999999999986
No 12
>smart00427 H2B Histone H2B.
Probab=98.56 E-value=2.6e-07 Score=64.02 Aligned_cols=66 Identities=15% Similarity=0.205 Sum_probs=63.5
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
.|..+|..|+.++++|+.+++.|+..|.....|++..+-.++..++.+.||-||.++|||.|.||.
T Consensus 2 sy~~Yi~kvLKqVhpd~giS~kam~imnSfvnDiferIa~EAs~L~~~nkr~TltsreIqtAvrl~ 67 (89)
T smart00427 2 TYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASKLARYNKKSTLSSREIQTAVRLI 67 (89)
T ss_pred cHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999999999985
No 13
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=98.41 E-value=5.5e-07 Score=58.73 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=51.7
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 56 LVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 56 LVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
-|+.|+....- -|.+.++...|.+..|.++-.+.+++..++.|+||-||++.||.+|.+
T Consensus 7 ~i~ria~~~Gi-~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 7 TIKDVAESLGI-GNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred HHHHHHHHCCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence 35666666543 389999999999999999999999999999999999999999998863
No 14
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=98.39 E-value=9.3e-07 Score=56.65 Aligned_cols=58 Identities=33% Similarity=0.342 Sum_probs=50.2
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHH
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 114 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ 114 (121)
|+.|++....+.+++.+|+.+|+.++|.|+..|-.+++..+-+.+|-||++.||..|.
T Consensus 8 vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 8 VKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp HHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred HHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 5667776656678999999999999999999999999999999999999999998763
No 15
>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi
Probab=98.35 E-value=1.5e-06 Score=62.55 Aligned_cols=66 Identities=21% Similarity=0.339 Sum_probs=60.2
Q ss_pred hHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 53 LKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 53 F~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
..++|..|+.+.. ..+++..++..|-|.++.|..++..|+...|-||+|.||...||.||...+++
T Consensus 3 d~~~v~~iLk~~G-v~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~ 68 (117)
T cd07979 3 DARVIAAILKSMG-ITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD 68 (117)
T ss_pred HHHHHHHHHHHCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 3578888888763 45999999999999999999999999999999999999999999999998875
No 16
>KOG1744 consensus Histone H2B [Chromatin structure and dynamics]
Probab=98.24 E-value=2.7e-06 Score=62.33 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=63.9
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
.|..+|+.++.++++|+.+.+.|+.++.....+++..+..+++.+|.+.||-||..+|||+|.+|.
T Consensus 38 ~~s~yv~kvlk~Vhpd~gis~~a~~vmnsf~ndife~iA~ea~rla~y~krstisSreiqta~rLl 103 (127)
T KOG1744|consen 38 SYSEYVYKVLKQVHPDLGISSKAMGVMNSFVNDIFERIASEAGRLAHYNKRSTISSREIQTAVRLL 103 (127)
T ss_pred ceeeehhhhhhcccCCCCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCcccHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999999999985
No 17
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=98.24 E-value=2.3e-06 Score=58.80 Aligned_cols=64 Identities=23% Similarity=0.345 Sum_probs=56.2
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccC
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 120 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~ 120 (121)
|-.||+|.- .--|++.++.+.+.++.|.||..+..|+...+-||+|.||+..||.++.+-.|..
T Consensus 18 ~I~RLarr~-----GvkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~ 81 (85)
T cd00076 18 AIRRLARRG-----GVKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT 81 (85)
T ss_pred HHHHHHHHc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence 555666532 3469999999999999999999999999999999999999999999999988863
No 18
>PLN00035 histone H4; Provisional
Probab=98.20 E-value=2.9e-06 Score=60.27 Aligned_cols=63 Identities=21% Similarity=0.285 Sum_probs=56.2
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
|-.||.|.- .--|++.+|.+.|.++.|.||..+..|+...+-||+|.||+..||.+|.+-.|.
T Consensus 34 ~IrRLARr~-----GvkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~g~ 96 (103)
T PLN00035 34 AIRRLARRG-----GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGR 96 (103)
T ss_pred HHHHHHHHc-----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHcCC
Confidence 666776543 246999999999999999999999999999999999999999999999988775
No 19
>PTZ00015 histone H4; Provisional
Probab=98.08 E-value=6.9e-06 Score=58.20 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=55.7
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
|-.||.|.- .--|++.++.+.+.+..|.||..+..|+..+|-||+|.||+..||.+|.+-.|.
T Consensus 35 ~IrRLarr~-----GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~ 97 (102)
T PTZ00015 35 AIRRLARRG-----GVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKRQGR 97 (102)
T ss_pred HHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC
Confidence 666666532 346999999999999999999999999999999999999999999999988775
No 20
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=98.05 E-value=7.7e-06 Score=55.05 Aligned_cols=61 Identities=30% Similarity=0.298 Sum_probs=51.1
Q ss_pred HHHHHHHHhh--hccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 55 RLVREIAQDF--KTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 55 RLVreI~~~~--~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
--|-+|+++. ..++.|+.+.+.||-|.+=.++..+-.|--..|.||||.||++.|+.|..|
T Consensus 9 ~~v~ki~ee~~~~~~~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~R 71 (76)
T PF15630_consen 9 YTVGKIVEEEAKEKGVEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLAR 71 (76)
T ss_dssp HHHHHHHHHCCCCTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTT
T ss_pred HHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhh
Confidence 3466677765 367899999999999999999999999999999999999999999999754
No 21
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=97.70 E-value=0.00012 Score=48.27 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=46.4
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
+.|+++++.++..+..++.+.|.+.|++|+.+..+.+-.+|.|-+--||..+|+|+...
T Consensus 5 l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Le 63 (68)
T PF03847_consen 5 LQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLE 63 (68)
T ss_dssp HHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 34555556788999999999999999999999999999999999999999999999854
No 22
>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins. subdomain of archael histone-like transcription factors
Probab=97.67 E-value=0.00023 Score=47.24 Aligned_cols=51 Identities=27% Similarity=0.238 Sum_probs=48.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 69 RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 69 rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
+++.+|++.|.+..|.|+..|-+.+...+-|++|.+..+.|+.++..-.|.
T Consensus 23 ~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~~gi 73 (77)
T smart00576 23 SFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALENLGI 73 (77)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCc
Confidence 889999999999999999999999999999999999999999999876554
No 23
>smart00417 H4 Histone H4.
Probab=97.61 E-value=5.1e-05 Score=50.92 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=48.0
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 112 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~l 112 (121)
|..||.|. . .--|++.++.+.|.++.|.||..+..|+..++-||+|.||+..|+..
T Consensus 18 ~IrRLaRr----~-GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~ 73 (74)
T smart00417 18 AIRRLARR----G-GVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVY 73 (74)
T ss_pred HHHHHHHH----c-CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHhee
Confidence 55555542 2 34699999999999999999999999999999999999999999853
No 24
>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []. TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.
Probab=97.53 E-value=0.00029 Score=51.70 Aligned_cols=65 Identities=29% Similarity=0.386 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 54 KRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 54 ~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
.++|..|+.+..- ..|+...+.-|-|.+-.|..++++||...|-||+|.+|...|++||-..+.+
T Consensus 15 a~~i~~iL~~~Gv-~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~r~~ 79 (129)
T PF02291_consen 15 ARVIHLILKSMGV-TEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQSRLD 79 (129)
T ss_dssp HHHHHHHHHHTT----B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHHT--
T ss_pred HHHHHHHHHHcCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHh
Confidence 5788999988752 3589999999999999999999999999999999999999999999887643
No 25
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=97.51 E-value=0.00036 Score=45.85 Aligned_cols=60 Identities=27% Similarity=0.336 Sum_probs=47.3
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 55 RLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 55 RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
.-|+-|++.+.- -..+.++..+|.+-+|.-|-.+.+++..++.|+||-+|++.||..|.|
T Consensus 7 esvk~iAes~Gi-~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 7 ESVKDIAESLGI-SNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp HHHHHHHHHTT----B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred HHHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 346677776542 247889999999999999999999999999999999999999999865
No 26
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=97.46 E-value=0.00034 Score=58.03 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 55 RLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 55 RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
..|+.|++... --+...+|..+|-+-+|.++-.+.++|..++.|+||.||+..||.+|.+.++.
T Consensus 3 ~~i~~ia~~~G-i~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~~n~ 66 (343)
T cd08050 3 ESIKLIAESLG-IDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRLRNV 66 (343)
T ss_pred hHHHHHHHHcC-CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHhCC
Confidence 45778887663 23889999999999999999999999999999999999999999999999864
No 27
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=97.43 E-value=0.00021 Score=60.81 Aligned_cols=56 Identities=32% Similarity=0.456 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhh-----ccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCccc
Q 048641 54 KRLVREIAQDFK-----TDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD 109 (121)
Q Consensus 54 ~RLVreI~~~~~-----~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kD 109 (121)
+-+|+.+++.|- ...++..+||.||..|+|-|+-+|-+|-.-.|.||+|.||...|
T Consensus 354 ~~~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD 414 (414)
T PF15511_consen 354 PGVVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD 414 (414)
T ss_dssp HHHHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred ccHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence 345666666662 56899999999999999999999999999999999999998776
No 28
>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]
Probab=97.34 E-value=0.00039 Score=53.17 Aligned_cols=61 Identities=28% Similarity=0.326 Sum_probs=55.9
Q ss_pred hHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 53 LKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 53 F~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
-.|||+|++++. ++-++.+|+.||+++|--|+.-|.--++-.|.-.+|.||++.|+-=++.
T Consensus 16 I~rlvke~l~E~--~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~ 76 (172)
T KOG0870|consen 16 ITRLVKEVLPES--NVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALD 76 (172)
T ss_pred HHHHHHHhCccc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHH
Confidence 458999999876 6899999999999999999999999999999999999999999876654
No 29
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.62 E-value=0.0023 Score=51.88 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=55.5
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 114 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ 114 (121)
-+.|.+.|.++++..+-.+..++-+.|.|.|++|+.++-.-+-.+|.|-|--||.++||+|..
T Consensus 155 l~k~kl~dLvqqId~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhL 217 (258)
T KOG1142|consen 155 LSKRKLDDLVQQIDGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHL 217 (258)
T ss_pred ccccchhHHHHhhcCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeee
Confidence 455666666666677788899999999999999999999999999999999999999999974
No 30
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=96.52 E-value=0.014 Score=42.08 Aligned_cols=63 Identities=24% Similarity=0.246 Sum_probs=51.5
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|..|.-|-+ .+-....|...+|...|-..-|.+...++|-+.-.+.|+++.+|+|+||+||.+
T Consensus 22 PV~ri~R~L-k~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~ 84 (115)
T cd00074 22 PVGRIHRYL-KKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVR 84 (115)
T ss_pred cHHHHHHHH-HcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHh
Confidence 444444333 222233799999999999999999999999999999999999999999999964
No 31
>KOG3334 consensus Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.69 E-value=0.044 Score=41.21 Aligned_cols=65 Identities=25% Similarity=0.427 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccC
Q 048641 55 RLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 120 (121)
Q Consensus 55 RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~ 120 (121)
++|-.|+.++. ---|....+.-|=|.+=.|.+.+++||...+-||+.-||...|++||...+++.
T Consensus 17 ~~i~~iL~s~G-I~eyEprVi~qlLefa~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~~~~~ 81 (148)
T KOG3334|consen 17 RVIASILKSLG-IQEYEPRVINQLLEFAYRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQMRVDH 81 (148)
T ss_pred HHHHHHHHHcC-ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHhcc
Confidence 56666666553 125677889999999999999999999999999999999999999999888753
No 32
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=95.04 E-value=0.066 Score=35.06 Aligned_cols=53 Identities=25% Similarity=0.214 Sum_probs=48.2
Q ss_pred cc-cchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 67 DM-RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 67 ~~-rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
+| .++.+||+.|-+.++.||..+...+...+-|+.|-...+.|+.++..=.|.
T Consensus 20 GF~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~~~gi 73 (77)
T PF07524_consen 20 GFDSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALEEMGI 73 (77)
T ss_pred CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCC
Confidence 44 688999999999999999999999999999999999999999998765553
No 33
>KOG3467 consensus Histone H4 [Chromatin structure and dynamics]
Probab=89.68 E-value=0.69 Score=32.39 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=41.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 69 RFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 69 rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
|+..-..+-...++..||.+...++..-+-||||.||+.-|+--+..-.|.
T Consensus 46 Ri~G~~yeE~~~~~k~fl~n~i~~A~~yt~HAKRKTvT~~dvv~~LKR~G~ 96 (103)
T KOG3467|consen 46 RISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 96 (103)
T ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeHHHHHHHHHHcCc
Confidence 455555566778888999999999999999999999999999877665443
No 34
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=88.27 E-value=0.76 Score=33.73 Aligned_cols=65 Identities=26% Similarity=0.346 Sum_probs=54.5
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
|..| |+.++..-...+|+.+.|...|--..|...-.++|-+.-.|.-.|-..|||+-+||| |||+
T Consensus 28 pvgr-vkr~lk~~~~~~Rig~~A~Vyl~AvleYL~aEilelAgNaA~d~kkkri~PrHlqlA--IrnD 92 (132)
T COG5262 28 PVGR-VKRLLKKGNYRMRIGAGAPVYLAAVLEYLAAEILELAGNAARDNKKKRIIPRHLQLA--IRND 92 (132)
T ss_pred cHHH-HHHHHHcCccceeecCCcHHHHHHHHHHHHHHHHHHhhhhhhhcCcceechHHHHHH--hcCc
Confidence 6665 455666445678999999999998888888899999999999999999999999998 5554
No 35
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=87.75 E-value=0.42 Score=32.87 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=29.1
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|++++--|...-.=..+.+..|.+..-.|++.+...|..+|.+.++-.|...|+-.+.|
T Consensus 7 I~~mMy~fGD~~~P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR 65 (93)
T PF02269_consen 7 IRQMMYGFGDVEEPLPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLR 65 (93)
T ss_dssp CHHHHHCTTS-SS--HHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHh
Confidence 44555555544455678889999999999999999999999999999999999988754
No 36
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=85.91 E-value=2.7 Score=32.21 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=52.3
Q ss_pred chHHHHHHHHHh-hhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhc
Q 048641 52 DLKRLVREIAQD-FKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 118 (121)
Q Consensus 52 pF~RLVreI~~~-~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg 118 (121)
|-.-++| |+.. +..+-.+..+|-+.+||.+-.|+-=+-.+|+--..--||.||+-.||..|+--.|
T Consensus 34 PIANV~R-IMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~tLG 100 (168)
T KOG0869|consen 34 PIANVSR-IMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMSTLG 100 (168)
T ss_pred cHHHHHH-HHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHHcC
Confidence 6665544 4443 4467899999999999999998887777777666778999999999999987665
No 37
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=82.03 E-value=3.7 Score=36.91 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhc
Q 048641 54 KRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 118 (121)
Q Consensus 54 ~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg 118 (121)
..-|+-+++... --.+..+|..+|-+=.|.-+-.+.+|+..++.|+||-+++..|+.-|.|.+.
T Consensus 14 ~Es~k~vAEslG-i~nl~deaa~~La~dv~yrikEI~Q~aaKfm~hskR~kLtv~DV~~ALr~~n 77 (576)
T KOG2549|consen 14 KESVKVVAESLG-ITNLNDEAALLLAEDVEYRIKEIVQDAAKFMVHSKRTKLTVDDVDYALRSLN 77 (576)
T ss_pred HHHHHHHHHHhC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHhhcc
Confidence 344555665543 2346789999999999999999999999999999999999999999988763
No 38
>cd08045 TAF4 TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryote. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are
Probab=81.58 E-value=4 Score=31.59 Aligned_cols=53 Identities=21% Similarity=0.197 Sum_probs=45.9
Q ss_pred CcCC-chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcC
Q 048641 48 GLER-DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAK 101 (121)
Q Consensus 48 alrr-pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hak 101 (121)
.|.+ |++..+..|+.+..-. .+..+.+..|..|+|.||-+|.++.-.++-|-.
T Consensus 44 fl~~~~l~~~~~~i~~~~g~~-~~~~d~~~lis~a~e~rlr~li~k~~~~s~hR~ 97 (212)
T cd08045 44 FLNPSPLAKKIRKIAKKHGLK-EVDEDVLDLISLALEERLRNLLEKLIEVSEHRV 97 (212)
T ss_pred ccCHHHHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3335 9999999999976533 889999999999999999999999999999963
No 39
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Probab=81.44 E-value=2 Score=34.23 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=37.8
Q ss_pred CCCCcCC-chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCcc
Q 048641 45 GNSGLER-DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRV 103 (121)
Q Consensus 45 gt~alrr-pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRv 103 (121)
....|.. |++..+.+|+.... ...+..+.+..|--|+|.+|-+|.|++...+.|-...
T Consensus 40 ~~~fL~~~~L~~~i~~i~~~~g-~~~~~~d~l~llS~A~e~rLr~lie~~~~~s~hR~~~ 98 (264)
T PF05236_consen 40 EEPFLNPSPLQKRIQKIAKKHG-LKSVDEDVLELLSLATEERLRNLIEKAIVLSRHRRDS 98 (264)
T ss_dssp ----S-HHHHHHHHHHHHHCTT---EE-TCHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred cccccCHHHHHHHHHHHHHHcC-CcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3344555 99999999997765 5678999999999999999999999999999995443
No 40
>smart00414 H2A Histone 2A.
Probab=78.85 E-value=3.9 Score=28.97 Aligned_cols=49 Identities=27% Similarity=0.262 Sum_probs=42.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 67 DMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 67 ~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
..|+.+.|..-|--.-|...-.++|-+...+...++..|+|+|++++.+
T Consensus 25 ~~Rv~~~A~VyLaAvLEYLtaEILeLagn~a~~~k~~rItp~hi~lAi~ 73 (106)
T smart00414 25 AKRVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKRRITPRHLQLAIR 73 (106)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHhhhcc
Confidence 4589999988888888888889999888888888999999999999853
No 41
>COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=78.18 E-value=3.6 Score=30.56 Aligned_cols=61 Identities=26% Similarity=0.346 Sum_probs=44.7
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCc---ccHHHHHHH
Q 048641 55 RLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMP---KDIQLARRI 116 (121)
Q Consensus 55 RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~---kDi~la~ri 116 (121)
||+-=|+....- -.+......-|-+.|--|-.++++|+...|-|+.|-.+.+ .|+.||.--
T Consensus 18 rlihliL~Slgi-~~ye~~VplQLl~FAhRYTq~vl~Dalvya~htgrg~~a~l~veDvrLA~at 81 (145)
T COG5094 18 RLIHLILRSLGI-EEYEPKVPLQLLEFAHRYTQDVLEDALVYAKHTGRGHIATLGVEDVRLALAT 81 (145)
T ss_pred hHHHHHHHhcCc-hhhCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHHHHHH
Confidence 555555554321 1334455566779999999999999999999998877666 999998654
No 42
>PLN00154 histone H2A; Provisional
Probab=77.08 E-value=13 Score=27.67 Aligned_cols=49 Identities=22% Similarity=0.188 Sum_probs=43.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 67 DMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 67 ~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
..|+.+.|..-|--.-|.....++|-+.-.+...|+..|+|++||||.+
T Consensus 55 ~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIr 103 (136)
T PLN00154 55 HGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 103 (136)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhcc
Confidence 3588889988888888988889999999999999999999999999954
No 43
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=75.93 E-value=14 Score=25.32 Aligned_cols=62 Identities=16% Similarity=0.250 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 53 LKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 53 F~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|..=++.++--|...-.=..+.+..|.+..-.|++.+.-.|..+|. ..+--+.+.|+-.+.|
T Consensus 4 f~~ei~~mmy~~GD~~~P~~eTv~llE~iv~~~i~~l~~~a~~~A~-~r~~k~~~eD~~FliR 65 (92)
T cd07978 4 FTKEIRQMMYGFGDVQNPLPETVDLLEDIVVEYIIELCHKAAEVAQ-RRRGKVKVEDLIFLLR 65 (92)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHh
Confidence 4444445555554433445688889999999999999999999998 5566669999988754
No 44
>PTZ00017 histone H2A; Provisional
Probab=74.85 E-value=4.4 Score=30.06 Aligned_cols=63 Identities=25% Similarity=0.250 Sum_probs=49.1
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|-.|.=|-+ .+-....|+.+.|..-|--.-|.....++|-+.-.+...+...|+|++|+||.+
T Consensus 29 PVgRi~R~L-k~g~~a~RV~a~A~VYLAAVLEYLtaEILELAgNaa~d~kk~RItPrHi~lAI~ 91 (134)
T PTZ00017 29 PVGRVHRYL-KKGRYAKRVGAGAPVYLAAVLEYLTAEVLELAGNAAKDNKKKRITPRHIQLAIR 91 (134)
T ss_pred chHHHHHHH-hccchhccccccchhhhHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHhhcc
Confidence 555544333 222233588888988888888999999999999999999999999999999954
No 45
>KOG2389 consensus Predicted bromodomain transcription factor [Transcription]
Probab=74.32 E-value=8.5 Score=32.77 Aligned_cols=61 Identities=25% Similarity=0.182 Sum_probs=50.6
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhc
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 118 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg 118 (121)
|-.|++.+. --.++.+|++-|+-.+--|+-+|-++|...+-|++|+-....||-+|..-.|
T Consensus 35 vaQIcqslg-~~~~~~sale~Ltd~~~qyvQ~lgk~a~~~~n~anR~epnl~Div~Al~dls 95 (353)
T KOG2389|consen 35 VAQICQSLG-YSSTQNSALETLTDVLQQYVQNLGKTAHRYSNLANRTEPNLFDIVLALQDLS 95 (353)
T ss_pred HHHHHHhcC-CcccccHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCccHHHHHHHHHHhh
Confidence 334444432 2367888999999999999999999999999999999999999999877654
No 46
>KOG4336 consensus TBP-associated transcription factor Prodos [Transcription]
Probab=73.00 E-value=9.7 Score=32.01 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=43.4
Q ss_pred ccccch---HHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 66 TDMRFQ---SSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 66 ~~~rf~---~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
.+..|+ ..|++-|=|+.-.|+-.+|+.+....-|++|.-.++.|+.|.....|.
T Consensus 16 ~~~gfd~is~~aletlvell~~yi~eigrq~~n~celagRT~pT~~Dv~l~Li~mnI 72 (323)
T KOG4336|consen 16 KTKGFDSISNAALETLVELLQSYIREIGRQLHNYCELAGRTIPTQGDVKLTLIEMNI 72 (323)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHhCC
Confidence 344454 445555666666799999999999999999999999999999888775
No 47
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=72.29 E-value=13 Score=28.24 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhc
Q 048641 54 KRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 118 (121)
Q Consensus 54 ~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg 118 (121)
+..|.||+. .|+||..+|-+.|++++=.|+--+-..+|..+---.+-||.+.-+.=|..-.|
T Consensus 19 ~KmIke~lP---~d~rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~Lg 80 (156)
T KOG0871|consen 19 NKMIKEMLP---KDVRVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALENLG 80 (156)
T ss_pred HHHHHHhCC---cccccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHcc
Confidence 344444432 49999999999999999999999999999999999999999998887766554
No 48
>PLN00156 histone H2AX; Provisional
Probab=71.90 E-value=13 Score=27.74 Aligned_cols=63 Identities=27% Similarity=0.267 Sum_probs=48.9
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|-.|.=|-+ .+-....|+.+.|..-|--.-|...-.++|-+.-.+...+...|+|+.|+|+.+
T Consensus 31 PVgRi~R~L-k~g~ya~RVga~ApVYLAAVLEYLtaEVLELAgNaa~d~kk~RItPrHi~lAIr 93 (139)
T PLN00156 31 PVGRIARFL-KAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVR 93 (139)
T ss_pred chHHHHHHH-hcCChhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHhhcc
Confidence 555544433 222233588899988888888888889999999999999999999999999854
No 49
>PF09123 DUF1931: Domain of unknown function (DUF1931); InterPro: IPR015207 This entry represents a set of hypothetical bacterial proteins containing a core of six alpha-helices, where one central helix is surrounded by the other five. The exact function of this family has not, as yet, been determined []. ; PDB: 1WWS_A 1WWI_A 1R4V_A.
Probab=67.08 E-value=12 Score=28.04 Aligned_cols=60 Identities=20% Similarity=0.293 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 53 LKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 53 F~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
|++|.|+-+. +-...+=+.=+-+.+|.-|-+||+-++.-|....|=.|.+.|+.+-..+.
T Consensus 1 fe~lFR~aa~-----LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~ngRdvI~~~DLPITkGlq 60 (138)
T PF09123_consen 1 FERLFRKAAG-----LDVDKNDAKRYSDFVEKKLYDLLLVAQENAKANGRDVIEPRDLPITKGLQ 60 (138)
T ss_dssp HHHHHHHHHS---------HHHHHHHHHHHHHHHHHCCCCHHHHHHHTT-SEE-GGGS---HHHH
T ss_pred ChHHHHHHhc-----cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeccccCCccHHHH
Confidence 6777777653 55556667778899999999999999999999999999999998876653
No 50
>KOG1658 consensus DNA polymerase epsilon, subunit C [Replication, recombination and repair]
Probab=64.46 E-value=5.2 Score=30.57 Aligned_cols=60 Identities=23% Similarity=0.315 Sum_probs=47.2
Q ss_pred chHHHHHHHHHhhhccccchH-HHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQS-SAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 113 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~-~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la 113 (121)
|.+|. ++|.. ..+|++|-. +|+.++-.|+|.|+-.|-.+++.|+--.||+|+..+|+..+
T Consensus 61 pL~ri-k~vvk-l~pdl~l~~dea~~l~a~aaelfi~~Ln~~~~~~~q~~k~kt~qr~d~D~a 121 (162)
T KOG1658|consen 61 PLARI-KQVVK-LDPDLTLLNDEASQLIAKAAELFIQELNDVAYTTAQLRKRKTEQRRDYDTA 121 (162)
T ss_pred cHHHH-Hhhcc-CCcchhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhhhhccccc
Confidence 66553 33332 347888765 45667889999999999999999999999999999998654
No 51
>PLN00157 histone H2A; Provisional
Probab=64.32 E-value=8.7 Score=28.46 Aligned_cols=63 Identities=27% Similarity=0.285 Sum_probs=49.0
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|-.|.=|-+ .+-....|+.+.|..-|--.-|...-.++|-+.-.+...+..-|+|++|+|+.+
T Consensus 28 PVgRi~R~L-k~g~~a~RIg~~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~ 90 (132)
T PLN00157 28 PVGRIARYL-KAGKYATRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKSRIVPRHIQLAVR 90 (132)
T ss_pred chHHHHHHH-hcCchhhhcCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHhhccc
Confidence 555544443 222233588888888888888888889999999999999999999999999853
No 52
>KOG1756 consensus Histone 2A [Chromatin structure and dynamics]
Probab=61.43 E-value=16 Score=27.11 Aligned_cols=63 Identities=24% Similarity=0.242 Sum_probs=48.0
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|..|+-|- +.+-....|+.+.|...|--.-|...-.++|.+-..|.-.+...|+|+-++||.+
T Consensus 29 Pvgri~r~-Lr~~~~~~ri~~gapV~laavLeYL~Aeile~agnaardnkk~ri~PrH~~lAI~ 91 (131)
T KOG1756|consen 29 PVGRIHRL-LRKGRYAQRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRITPRHLQLAIR 91 (131)
T ss_pred CHHHHHHH-HHccchhhhccCCChHHHHHHHHHHHHHHHHHhHHHhhhcCccccChHHHHHHHh
Confidence 55544332 2333345788888888888666666678999999999999999999999999954
No 53
>PLN00153 histone H2A; Provisional
Probab=61.32 E-value=32 Score=25.36 Aligned_cols=63 Identities=27% Similarity=0.278 Sum_probs=49.3
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|-.|.=|-+ .+-....|+.+.|..-|--.-|...-.++|-+.-.+...|..-|+|+.|+|+.+
T Consensus 26 pVgRi~R~L-r~g~~a~Rvga~A~VYLAAVLEYLtaEVLELAgnaa~d~kk~RItPrHi~lAI~ 88 (129)
T PLN00153 26 PVGRIARYL-KKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIR 88 (129)
T ss_pred chHHHHHHH-hcCchhhccCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccChHHHHhhcc
Confidence 555554444 222233588899988888888888889999999999999999999999999854
No 54
>COG5248 TAF19 Transcription initiation factor TFIID, subunit TAF13 [Transcription]
Probab=59.13 E-value=43 Score=24.40 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=48.3
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
-|..=|..++--|..+.-=..+.++||.|-+-+|++.+..++--.|- .|=.+...|...+.|
T Consensus 10 LF~KDikslmYayGDvv~P~~dt~~~L~e~V~dY~~~~ctna~~~Aq--~rnK~k~eDfkfaLr 71 (126)
T COG5248 10 LFMKDIKSLMYAYGDVVAPRYDTAEALHEYVLDYMSILCTNAHNMAQ--VRNKTKTEDFKFALR 71 (126)
T ss_pred HHHHHHHHHHHHhCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH--hcccchHHHHHHHHh
Confidence 46666777777777666666788999999999999999888777766 566677788888865
No 55
>KOG3901 consensus Transcription initiation factor IID subunit [Transcription]
Probab=50.15 E-value=79 Score=22.72 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=47.1
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
-|++=++..+-.|..+--=-.+.+++|.+-+=+|++.+...+... ++|=-+...|+..+.|
T Consensus 10 lF~Kdl~~mmYgfGDd~nP~~~tv~~Le~iV~~Yi~elt~~a~~~---g~rgk~~veD~~f~lR 70 (109)
T KOG3901|consen 10 LFSKDLRSMMYGFGDDVNPYPETVDLLEDIVLEYITELTHAAMEI---GKRGKVKVEDFKFLLR 70 (109)
T ss_pred HHHHHHHHHHHhcCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHh---cccCceeHHHHHHHHH
Confidence 678888888888876655557889999999999999995554444 4777888899987754
No 56
>PTZ00252 histone H2A; Provisional
Probab=46.52 E-value=69 Score=23.81 Aligned_cols=63 Identities=19% Similarity=0.186 Sum_probs=46.5
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhh--cCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIH--AKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~h--akRvTi~~kDi~la~r 115 (121)
|-.|.-|-+ .+-.-..|+.+.|..-|--.-|.....++|-+.-.|.. .|...|+|++|||+.+
T Consensus 27 PVgRi~R~L-r~g~ya~RIga~ApVYLAAVLEYLtaEVLELAgnaa~d~~~kk~RItPrHi~lAIr 91 (134)
T PTZ00252 27 PVGRVGSLL-RRGQYARRIGASGAVYMAAVLEYLTAELLELSVKAAAQQAKKPKRLTPRTVTLAVR 91 (134)
T ss_pred chHHHHHHH-HcCCcccccCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHhhcc
Confidence 655554444 22233459999998888888888888899988887754 6778899999999854
No 57
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=44.31 E-value=39 Score=29.07 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=49.5
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhc
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 118 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg 118 (121)
++.+++... ---+..+++-||---.|.-+-.+-+++.....|.||--++..||.-|.|-+.
T Consensus 11 ~KdvAeslG-i~Ni~Dd~l~alamDlEYRI~ev~qea~KFmvhSKRtvLt~dDis~ALr~lN 71 (450)
T COG5095 11 LKDVAESLG-ISNIDDDALRALAMDLEYRIKEVCQEASKFMVHSKRTVLTIDDISYALRSLN 71 (450)
T ss_pred HHHHHHHcC-CcccccHHHHHHHHhHHHHHHHHHHHHHHHhhcccceeeeHHhHHHHHHhcC
Confidence 445554432 1245678899999999999999999999999999999999999999988764
No 58
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=43.05 E-value=68 Score=23.98 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=47.6
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 114 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ 114 (121)
-.|..|-+|+. .|+-|+.+|-+.+++++=.|+--|-..+|..+---...||-+.-+--|.
T Consensus 16 TVqKMvS~iLp---~dl~ftKearei~in~cieFi~~lsseAne~ce~EaKKTIa~EHviKAL 75 (148)
T COG5150 16 TVQKMVSSILP---KDLVFTKEAREIFINACIEFINMLSSEANEACEEEAKKTIAYEHVIKAL 75 (148)
T ss_pred HHHHHHHHhcc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34566666654 7899999999999999999999998889888777777888777655443
No 59
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=39.29 E-value=69 Score=25.52 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=45.9
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhh--cCccccCcccHHHHH
Q 048641 54 KRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIH--AKRVTIMPKDIQLAR 114 (121)
Q Consensus 54 ~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~h--akRvTi~~kDi~la~ 114 (121)
.+.|++.++. .++.+..+|+..|-+.++.=|..+-.+...++.+ ++.-+|+..|++.+.
T Consensus 136 ~~~i~~~~~~--~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v 196 (326)
T PRK07452 136 KQLVERTAQE--LGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALV 196 (326)
T ss_pred HHHHHHHHHH--cCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHh
Confidence 4455555543 4678999999999999998888888888888888 567788999988653
No 60
>KOG1757 consensus Histone 2A [Chromatin structure and dynamics]
Probab=38.33 E-value=63 Score=23.64 Aligned_cols=66 Identities=23% Similarity=0.276 Sum_probs=44.1
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
|..|.-|.+-+.....-|.-+.|..-+-..-|..-...+|-+.-.+---|-..|+|+-+||| |||+
T Consensus 32 pVgRihr~LK~r~t~h~rVGataavy~aaileYLTaEVLeLAgNasKdLKvKRitprHlqLA--iRGD 97 (131)
T KOG1757|consen 32 PVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLA--IRGD 97 (131)
T ss_pred chHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHcccccccceeeeccchhheee--ecCc
Confidence 77787777766655556766665544444445444566777766666666677889999998 5665
No 61
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=35.69 E-value=96 Score=20.74 Aligned_cols=43 Identities=16% Similarity=0.156 Sum_probs=33.4
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhh
Q 048641 55 RLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCA 97 (121)
Q Consensus 55 RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a 97 (121)
+.+|+.+..+-....|..+.+..+.-|.+..+++.++.++...
T Consensus 9 ~~~r~~~~~~~~~~~~~~~~~~~~~lav~E~~~Nav~H~~~~~ 51 (125)
T PF13581_consen 9 REARAFLREFLERLGLPEEDRDDLELAVSEALTNAVEHGYPGD 51 (125)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4566666666666888888888888899988999888877643
No 62
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=34.37 E-value=55 Score=25.32 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=20.6
Q ss_pred hccccchHHHHHHHHHHHHHHHHHHh
Q 048641 65 KTDMRFQSSAVAALQEAAEAYLVGLF 90 (121)
Q Consensus 65 ~~~~rf~~~Al~aLQeaaE~~Lv~lf 90 (121)
.++++|+...-.++||.+|++..-.|
T Consensus 70 ~~~~~y~~~~~~~lQEyvEA~~f~~~ 95 (204)
T PRK14562 70 HPELYYAGYVGTALQEYVEALLVYSL 95 (204)
T ss_pred CchhhhhhhcchHHHHHHHHHHHHHH
Confidence 36788888888899999998665544
No 63
>PHA03159 hypothetical protein; Provisional
Probab=34.27 E-value=93 Score=23.41 Aligned_cols=48 Identities=21% Similarity=0.420 Sum_probs=37.5
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHH--HHHHhhhhhHhhhh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAY--LVGLFEDTNLCAIH 99 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~--Lv~lfe~a~l~a~h 99 (121)
-||..|-.|+.++...--=|.+-+-|+...-..| +..|+.|-.+|+.-
T Consensus 5 ~fq~~ie~il~~cq~~~~~~dsivraihsvi~qynkfe~lmpdfs~c~hd 54 (160)
T PHA03159 5 KFQKIIENILKECQDCHHQQDSIVRAIHSVIHQYNKFEALMPDFSICAHD 54 (160)
T ss_pred cHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHhCCCchhhhhh
Confidence 4899999999888655555667777888887765 67888999999864
No 64
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=33.07 E-value=98 Score=27.23 Aligned_cols=58 Identities=19% Similarity=0.268 Sum_probs=42.7
Q ss_pred HHHHHHhhh--ccccchHHHHHHHHHHHH--HHHHHHhhhhhHhhhhcCccccCcccHHHHH
Q 048641 57 VREIAQDFK--TDMRFQSSAVAALQEAAE--AYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 114 (121)
Q Consensus 57 VreI~~~~~--~~~rf~~~Al~aLQeaaE--~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ 114 (121)
+.+|++..- .++.|..++++.|-.-+. ..++.+++.+...|..-++.+|..+|+.-+.
T Consensus 268 i~~Il~~~a~k~~i~is~~al~~I~~y~~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl 329 (531)
T TIGR02902 268 IKEIAKNAAEKIGINLEKHALELIVKYASNGREAVNIVQLAAGIALGEGRKRILAEDIEWVA 329 (531)
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHh
Confidence 344444432 357788899888755554 3788888888888888889999999998775
No 65
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=31.36 E-value=1.8e+02 Score=25.67 Aligned_cols=65 Identities=26% Similarity=0.296 Sum_probs=49.0
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHH-----------HHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAE-----------AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE-----------~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
.|.++|..|+++.+ -.-|+.+|+..|=+.+- ..|.+|+..|+..|--.+.-.|...||+-|..-|
T Consensus 431 ~~~~~i~~~~~~~~-L~~~~~~Av~~li~~~~R~~q~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~r 506 (509)
T PF13654_consen 431 QYARFIASICQKEG-LPPFDRSAVARLIEYSARLDQDKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIEER 506 (509)
T ss_dssp HHHHHHHHHHHHHS-S--BBHHHHHHHHHHHHHCC-SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH-
T ss_pred HHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHHHhCCEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHcc
Confidence 77888888888663 24789999988655543 5889999999999998889999999999886544
No 66
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=30.26 E-value=94 Score=21.07 Aligned_cols=43 Identities=23% Similarity=0.399 Sum_probs=33.3
Q ss_pred HHHHHHHHHh-hhccccchHHHHHHHHH--HHHHHHHHHhhhhhHh
Q 048641 54 KRLVREIAQD-FKTDMRFQSSAVAALQE--AAEAYLVGLFEDTNLC 96 (121)
Q Consensus 54 ~RLVreI~~~-~~~~~rf~~~Al~aLQe--aaE~~Lv~lfe~a~l~ 96 (121)
.|.+.|-++. |+.++-.++..+..|+. -+|+||-++.+..+.|
T Consensus 19 pra~aeyLqvrfN~~yl~~sG~i~~lr~~G~SE~~I~Gfl~Gl~~A 64 (77)
T PF10911_consen 19 PRAAAEYLQVRFNAAYLMASGIISALRKQGWSESYILGFLAGLQYA 64 (77)
T ss_pred cHHHHHHHHHHhcHHHHHHhhhHHHHHHccccHHHHHHHHHHHHHH
Confidence 3566666653 56777788888888875 4899999999998887
No 67
>PF04604 L_biotic_typeA: Type-A lantibiotic; InterPro: IPR007682 Lantibiotics are antibiotic peptides distinguished by the presence of the rare thioether amino acids lanthionine and/or methyllanthionine. They are produced by Gram-positive bacteria as gene-encoded precursor peptides and undergo post-translational modification to generate the mature peptide. Based on their structural and functional features lantibiotics are currently divided into two major groups: the flexible amphiphilic type-A and the rather rigid and globular type-B. Type-A lantibiotics act primarily by pore formation in the bacterial membrane by a mechanism involving the interaction with specific docking molecules such as the membrane precursor lipid II [].; GO: 0019748 secondary metabolic process, 0005576 extracellular region
Probab=29.70 E-value=49 Score=20.74 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 048641 73 SAVAALQEAAEAYLVGLFED 92 (121)
Q Consensus 73 ~Al~aLQeaaE~~Lv~lfe~ 92 (121)
+++.+|||.++.-|..+...
T Consensus 7 ea~~~lqevs~eELd~ilGg 26 (51)
T PF04604_consen 7 EALNSLQEVSDEELDQILGG 26 (51)
T ss_pred HHHHHHHhcCHHHHHHHhCC
Confidence 89999999999999998875
No 68
>PF07105 DUF1367: Protein of unknown function (DUF1367); InterPro: IPR009797 This entry is represented by Bacteriophage VT2phi_272, P37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several highly conserved, hypothetical bacterial and phage proteins of around 200 resides in length. The function of this family is unknown.
Probab=29.08 E-value=87 Score=24.69 Aligned_cols=16 Identities=50% Similarity=0.650 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 048641 76 AALQEAAEAYLVGLFE 91 (121)
Q Consensus 76 ~aLQeaaE~~Lv~lfe 91 (121)
.+||++|+.||-.+-+
T Consensus 91 ~~l~~~A~~yL~~va~ 106 (196)
T PF07105_consen 91 DALQEAADQYLAKVAK 106 (196)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7999999999988764
No 69
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=27.26 E-value=1.5e+02 Score=21.48 Aligned_cols=43 Identities=9% Similarity=0.124 Sum_probs=35.8
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTN 94 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~ 94 (121)
-+-+.||..+..+-....|..+.+.-|+-+++..+++.++.++
T Consensus 17 ~~~~~vr~~~~~~a~~~g~~~~~~~~l~lav~Ea~~Nai~ha~ 59 (159)
T TIGR01924 17 EYVGLIRLTLSGIASRAGYTYDDIEDLKIAVSEACTNAVKHAY 59 (159)
T ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHhcc
Confidence 4667888888888778889999998899999888888887765
No 70
>PF05258 DUF721: Protein of unknown function (DUF721); InterPro: IPR007922 This family contains several actinomycete proteins of unknown function, and related sequences from other species.
Probab=26.67 E-value=1.5e+02 Score=18.52 Aligned_cols=63 Identities=19% Similarity=0.188 Sum_probs=43.8
Q ss_pred chHHHHHHHHHhhhccccc-hHHHHHHHHHHHHHHH-HHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 52 DLKRLVREIAQDFKTDMRF-QSSAVAALQEAAEAYL-VGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf-~~~Al~aLQeaaE~~L-v~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
|+..++.++... ..-+ +...+..|+..=+..+ -.+.+.+....+..+..+|...|--.+..|+
T Consensus 1 pl~~~L~~~~~~---~~~~~~~~~~~~l~~~w~~ivg~~l~~~~~~~~i~~g~L~i~v~~~~~~~~L~ 65 (89)
T PF05258_consen 1 PLGDLLEELLKK---SGLKKRALQLARLQQNWKQIVGPELAQHTRPVSIKDGTLVIEVDSSAWAQELR 65 (89)
T ss_pred CHHHHHHHHHhh---hhHHHhhHHHHHHHHHHHHHhCHHHHccEEEEEEECCEEEEEECCHHHHHHHH
Confidence 455555555432 1223 4556666777777777 5778888888999999999999987777765
No 71
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=23.33 E-value=3.1e+02 Score=24.74 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=38.2
Q ss_pred ccchHHHHHHHHH-HH------------HHHHHHHhhhhhHhhhhcCccccCcccHHHHHHH
Q 048641 68 MRFQSSAVAALQE-AA------------EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 116 (121)
Q Consensus 68 ~rf~~~Al~aLQe-aa------------E~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ri 116 (121)
..|+.+|+..|-+ ++ +..|.++...++..|...+..+|..+|++-|...
T Consensus 329 ~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~ 390 (608)
T TIGR00764 329 PHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKL 390 (608)
T ss_pred CcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHH
Confidence 3799999998864 23 3678888888888787778899999999866443
No 72
>cd00913 PCD_DCoH_subfamily_a PCD_DCoH: The bifunctional protein pterin-4alpha-carbinolamine dehydratase (PCD), also known as DCoH (dimerization cofactor of hepatocyte nuclear factor-1), is both a transcription activator and a metabolic enzyme. DCoH stimulates gene expression by associating with specific DNA binding proteins such as HNF-1alpha (hepatocyte nuclear factor-1) and Xenopus enhancer of rudimentary homologue (XERH). DCoH also catalyzes the dehydration of 4alpha- hydroxy- tetrahydrobiopterin (4alpha-OH-BH4) to quinoiddihydrobiopterin, a percursor of the phenylalanine hydroxylase cofactor BH4 (tetrahydrobiopterin). The DCoH homodimer has a saddle-shaped structure similar to that of TBP (TATA binding protein).
Probab=22.66 E-value=41 Score=21.77 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=10.9
Q ss_pred cCcccHHHHHHH
Q 048641 105 IMPKDIQLARRI 116 (121)
Q Consensus 105 i~~kDi~la~ri 116 (121)
|+.+|+.||.+|
T Consensus 62 lT~~D~~lA~~i 73 (76)
T cd00913 62 LSENDFIMAAKI 73 (76)
T ss_pred CCHHHHHHHHHH
Confidence 788999999988
No 73
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=22.50 E-value=1.9e+02 Score=25.53 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=54.2
Q ss_pred chH-HHHHHHHHhh--hccccchHHHHHHHHHHHH----HHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 52 DLK-RLVREIAQDF--KTDMRFQSSAVAALQEAAE----AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 52 pF~-RLVreI~~~~--~~~~rf~~~Al~aLQeaaE----~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
||. .=++||..-= -.++-.+.+|++-|-...| -|-++|++-++..|.-.+.-+|...|+.-|..|-
T Consensus 360 py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF 432 (450)
T COG1224 360 PYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELF 432 (450)
T ss_pred CCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHH
Confidence 887 4688887643 2678899999999876655 4999999999999999999999999998876653
No 74
>PF06075 DUF936: Plant protein of unknown function (DUF936); InterPro: IPR010341 This family consists of several hypothetical proteins from plants. The function of this family is unknown.
Probab=22.03 E-value=1.1e+02 Score=27.69 Aligned_cols=54 Identities=31% Similarity=0.391 Sum_probs=36.0
Q ss_pred cCCCCCCCcC--C-chHHHHHHHHHhhhccccchHHHHHHHHHHH--HHHHHHHhhhhhHhh
Q 048641 41 PFQAGNSGLE--R-DLKRLVREIAQDFKTDMRFQSSAVAALQEAA--EAYLVGLFEDTNLCA 97 (121)
Q Consensus 41 r~rpgt~alr--r-pF~RLVreI~~~~~~~~rf~~~Al~aLQeaa--E~~Lv~lfe~a~l~a 97 (121)
++--+.+.+- + ....|-+|+++.=. + =+.-|++|||||+ |..|-.|=.-++||.
T Consensus 310 k~td~sisw~sLP~sL~kLGKEa~~~Rd--~-A~~aA~eALqEASAaE~lir~Ls~fseL~s 368 (579)
T PF06075_consen 310 KWTDGSISWDSLPSSLAKLGKEAMQQRD--A-AQKAAVEALQEASAAESLIRCLSMFSELCS 368 (579)
T ss_pred CcccccCccccCCHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444443 4 88899999998432 1 2457999999975 566666666677773
No 75
>PF07278 DUF1441: Protein of unknown function (DUF1441); InterPro: IPR009901 This entry is represented by Bacteriophage VT1-Sakai, H0025. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown.
Probab=21.94 E-value=3e+02 Score=20.75 Aligned_cols=43 Identities=16% Similarity=0.261 Sum_probs=35.6
Q ss_pred chHHHHHHHHHhhh-------ccccchHHHHHHHHHHHHHHHHHHhhhhh
Q 048641 52 DLKRLVREIAQDFK-------TDMRFQSSAVAALQEAAEAYLVGLFEDTN 94 (121)
Q Consensus 52 pF~RLVreI~~~~~-------~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~ 94 (121)
-|..+++-|.|.+. .|..++.+++..+|++.-+...+|-+...
T Consensus 98 ~~s~~~Kav~q~LetlPD~LERd~gL~p~~v~~vQ~~iD~lR~~l~~~i~ 147 (152)
T PF07278_consen 98 EMSEMAKAVVQVLETLPDILERDAGLPPEQVARVQSVIDDLRDQLAERIQ 147 (152)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888763 47899999999999999998888876543
No 76
>COG5304 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.67 E-value=66 Score=22.46 Aligned_cols=14 Identities=21% Similarity=0.517 Sum_probs=12.2
Q ss_pred chHHHHHHHHHhhh
Q 048641 52 DLKRLVREIAQDFK 65 (121)
Q Consensus 52 pF~RLVreI~~~~~ 65 (121)
|+|+++|||+....
T Consensus 76 pYQtyIreiLh~~~ 89 (92)
T COG5304 76 PYQTYIREILHKYS 89 (92)
T ss_pred cHHHHHHHHHHhhc
Confidence 99999999998653
No 77
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=20.97 E-value=2.3e+02 Score=22.88 Aligned_cols=57 Identities=23% Similarity=0.158 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHH
Q 048641 54 KRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLAR 114 (121)
Q Consensus 54 ~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ 114 (121)
.+.|++.+++ .+..++.+|+.-|-+..+.=|..+-.+-..+..+.+ +|+..|++.+.
T Consensus 141 ~~~i~~~~~~--~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~--~It~edV~~~v 197 (328)
T PRK08487 141 LELLQERAKE--LGLDIDQNALNHLYFIHNEDLALAANELEKLAILNE--PITLKDIQELV 197 (328)
T ss_pred HHHHHHHHHH--hCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcC--CCCHHHHHHHh
Confidence 3444444443 467899999999999999888888888888888876 68888887653
No 78
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.87 E-value=36 Score=30.03 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=45.4
Q ss_pred HHHHHHhh-hccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHH
Q 048641 57 VREIAQDF-KTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLA 113 (121)
Q Consensus 57 VreI~~~~-~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la 113 (121)
.+|..+.. ...-.+..+.-+.|-+-|..|....-+=+-.+|.|.|--||.++|+||-
T Consensus 389 L~el~~~~vd~eekie~eveelll~~ad~fve~vt~FsCrlakhrkSdtlevrD~qlh 446 (505)
T COG5624 389 LEELQHGGVDEEEKIENEVEELLLSRADGFVEPVTEFSCRLAKHRKSDTLEVRDGQLH 446 (505)
T ss_pred HHHHHhhccCcceeccchHHHHHHhhhcccccccchheeEeeccCCCCceeeccceee
Confidence 45555544 4556777888888888888888887777777999999999999999985
No 79
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=20.41 E-value=1.2e+02 Score=19.91 Aligned_cols=57 Identities=7% Similarity=0.091 Sum_probs=31.3
Q ss_pred HHHHHHHHhh--hccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccc-cCcccHH
Q 048641 55 RLVREIAQDF--KTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVT-IMPKDIQ 111 (121)
Q Consensus 55 RLVreI~~~~--~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvT-i~~kDi~ 111 (121)
-+|.+|.+.. +.+.+++.+|+..+.+-.+-|...-+.-|..-+---+--. |.+.|+.
T Consensus 3 ~li~rll~~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LE 62 (72)
T PF09415_consen 3 ELIARLLHEHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLE 62 (72)
T ss_dssp HHHHHHHCTTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHH
T ss_pred HHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 4667777753 2678999999988887766666555444443332223223 5555543
No 80
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=20.17 E-value=2.5e+02 Score=20.18 Aligned_cols=43 Identities=9% Similarity=0.155 Sum_probs=32.1
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTN 94 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~ 94 (121)
-+-++||..+..+...+.|..+.+..|+-|.+..+.+..+.++
T Consensus 17 ~~~~~vr~~v~~~~~~~g~~~~~~~~l~lav~Ea~~Nai~Hg~ 59 (161)
T PRK04069 17 EYVSIIRLTLSGVANRMGFSYDDIEDMKIAVSEACTNAVQHAY 59 (161)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567888888888777888888877777777766666665554
No 81
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=20.08 E-value=2.9e+02 Score=24.05 Aligned_cols=66 Identities=20% Similarity=0.292 Sum_probs=53.9
Q ss_pred chH-HHHHHHHHhh--hccccchHHHHHHHHHHHHH----HHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 52 DLK-RLVREIAQDF--KTDMRFQSSAVAALQEAAEA----YLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 52 pF~-RLVreI~~~~--~~~~rf~~~Al~aLQeaaE~----~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
|+. +=+++|+.-- ..|.-.+.+|+.-|-...|+ |-..|...+++.+...|--++...||+-|-+|-
T Consensus 357 py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~LF 429 (454)
T KOG2680|consen 357 PYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRLF 429 (454)
T ss_pred cCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHHH
Confidence 665 4566666532 26788999999988776665 999999999999999999999999999988874
No 82
>PRK05907 hypothetical protein; Provisional
Probab=20.03 E-value=1.8e+02 Score=23.81 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=46.8
Q ss_pred hHHHHHHHHHhhh-ccccchHHHHHHHHHHH-HHHHHHHhhhhhHhhhh-cCccccCcccHHHH
Q 048641 53 LKRLVREIAQDFK-TDMRFQSSAVAALQEAA-EAYLVGLFEDTNLCAIH-AKRVTIMPKDIQLA 113 (121)
Q Consensus 53 F~RLVreI~~~~~-~~~rf~~~Al~aLQeaa-E~~Lv~lfe~a~l~a~h-akRvTi~~kDi~la 113 (121)
-+.|.+-|.+.++ .+..++.+|+.-|=+.+ +.-|-.+..+-..+..+ +.+-+|+..|++.+
T Consensus 136 e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~l 199 (311)
T PRK05907 136 DKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSF 199 (311)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHH
Confidence 3677777777775 57899999998888877 56666777667777777 66888999998765
Done!