Query 048641
Match_columns 121
No_of_seqs 125 out of 568
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 20:09:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048641.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048641hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tzy_C Histone H3; histone-fol 100.0 4.4E-56 1.5E-60 326.0 4.0 121 1-121 1-136 (136)
2 2yfv_A Histone H3-like centrom 100.0 2.9E-42 9.8E-47 241.5 5.9 81 37-117 2-100 (100)
3 3r45_A Histone H3-like centrom 100.0 3.2E-42 1.1E-46 256.8 5.9 97 22-120 38-152 (156)
4 3nqu_A Histone H3-like centrom 100.0 7.8E-42 2.7E-46 251.3 6.7 96 23-120 23-136 (140)
5 3nqj_A Histone H3-like centrom 100.0 4.2E-38 1.4E-42 213.6 7.1 69 52-120 8-78 (82)
6 2hue_B Histone H3; mini beta s 100.0 5.8E-38 2E-42 210.7 6.6 70 52-121 8-77 (77)
7 2l5a_A Histone H3-like centrom 100.0 1.1E-35 3.7E-40 233.7 6.7 69 52-120 16-87 (235)
8 2ly8_A Budding yeast chaperone 99.9 1.7E-27 5.9E-32 171.4 7.2 68 52-119 6-114 (121)
9 1b67_A Protein (histone HMFA); 99.8 2.7E-20 9.4E-25 120.3 4.4 60 52-116 7-66 (68)
10 1ku5_A HPHA, archaeal histon; 99.6 2.4E-16 8.3E-21 102.5 4.8 59 52-115 11-69 (70)
11 1n1j_A NF-YB; histone-like PAI 99.4 4.4E-13 1.5E-17 91.2 4.8 64 52-118 13-76 (93)
12 1tzy_B Histone H2B; histone-fo 99.0 6.3E-10 2.2E-14 80.3 6.6 66 52-117 37-102 (126)
13 2r10_A Chromatin structure-rem 98.9 1.3E-10 4.6E-15 95.2 1.3 48 3-50 3-50 (361)
14 2nqb_D Histone H2B; nucleosome 98.9 1.6E-09 5.3E-14 78.0 6.5 66 52-117 34-99 (123)
15 2yfw_B Histone H4, H4; cell cy 98.7 1.3E-08 4.5E-13 70.5 5.3 64 52-120 34-97 (103)
16 1tzy_D Histone H4-VI; histone- 98.7 1.8E-08 6.1E-13 69.8 5.4 63 52-119 34-96 (103)
17 3b0c_W CENP-W, centromere prot 98.7 2.5E-08 8.5E-13 65.5 5.0 60 57-116 10-69 (76)
18 3b0c_T CENP-T, centromere prot 98.6 5.2E-08 1.8E-12 68.5 6.2 63 56-119 12-74 (111)
19 1id3_B Histone H4; nucleosome 98.6 7.5E-08 2.5E-12 66.8 5.5 64 52-120 33-96 (102)
20 4dra_A Centromere protein S; D 98.5 1.4E-07 4.7E-12 67.0 5.5 62 52-115 32-93 (113)
21 2hue_C Histone H4; mini beta s 98.5 8.3E-08 2.8E-12 64.2 4.0 62 57-119 16-77 (84)
22 1taf_A TFIID TBP associated fa 98.5 3.2E-07 1.1E-11 59.7 6.5 62 55-117 5-66 (68)
23 3v9r_A MHF1, uncharacterized p 98.5 2.6E-07 9E-12 63.0 5.5 60 56-115 17-78 (90)
24 3b0b_B CENP-S, centromere prot 98.4 2.5E-07 8.6E-12 64.9 4.7 60 54-115 26-85 (107)
25 3vh5_A CENP-S; histone fold, c 98.4 3E-07 1E-11 67.3 5.2 59 57-115 25-85 (140)
26 2jss_A Chimera of histone H2B. 98.4 8.7E-07 3E-11 67.2 6.8 66 52-117 4-69 (192)
27 1f1e_A Histone fold protein; a 98.3 1.1E-06 3.8E-11 65.1 5.9 60 52-116 87-146 (154)
28 1taf_B TFIID TBP associated fa 98.2 1.9E-06 6.4E-11 56.3 5.5 59 57-116 12-70 (70)
29 2x4w_B Histone H3.2; transcrip 98.2 3.6E-07 1.2E-11 48.3 1.2 25 24-48 2-26 (26)
30 1f1e_A Histone fold protein; a 98.1 4.7E-06 1.6E-10 61.7 6.1 64 52-119 9-72 (154)
31 1n1j_B NF-YC; histone-like PAI 98.1 4E-06 1.4E-10 57.2 4.9 63 52-115 21-83 (97)
32 4g92_C HAPE; transcription fac 98.0 8E-06 2.7E-10 57.8 5.5 63 52-115 43-105 (119)
33 2byk_B Chrac-14; nucleosome sl 98.0 1.6E-05 5.3E-10 57.0 6.1 62 57-118 15-77 (128)
34 1jfi_B DR1 protein, transcript 97.8 3.4E-05 1.1E-09 58.4 6.4 63 52-118 20-82 (179)
35 1jfi_A Transcription regulator 97.6 3.5E-05 1.2E-09 52.7 3.5 63 52-115 13-75 (98)
36 1h3o_B Transcription initiatio 97.5 0.00027 9.3E-09 46.7 6.0 60 52-115 10-69 (76)
37 2byk_A Chrac-16; nucleosome sl 97.2 0.00025 8.5E-09 51.5 3.8 63 52-115 21-84 (140)
38 2l5a_A Histone H3-like centrom 97.1 0.0004 1.4E-08 54.5 4.4 67 52-119 154-228 (235)
39 2nqb_C Histone H2A; nucleosome 97.0 0.0011 3.7E-08 47.1 5.7 63 52-115 25-87 (123)
40 2f8n_G Core histone macro-H2A. 97.0 0.0012 4.2E-08 46.7 5.6 49 67-115 38-86 (120)
41 1tzy_A Histone H2A-IV; histone 97.0 0.0013 4.6E-08 47.1 5.7 63 52-115 27-89 (129)
42 1id3_C Histone H2A.1; nucleoso 96.8 0.0014 4.7E-08 47.1 4.7 63 52-115 27-89 (131)
43 2f8n_K Histone H2A type 1; nuc 96.8 0.0016 5.5E-08 47.8 5.1 63 52-115 46-108 (149)
44 1f66_C Histone H2A.Z; nucleoso 96.8 0.0026 8.8E-08 45.5 5.6 63 52-115 29-92 (128)
45 3avr_B Histone H3; cupin super 96.1 0.0014 4.9E-08 34.2 0.7 25 18-42 1-25 (26)
46 2jss_A Chimera of histone H2B. 96.0 0.0087 3E-07 45.1 5.0 49 67-115 122-170 (192)
47 3a1b_A DNA (cytosine-5)-methyl 94.8 0.0061 2.1E-07 45.2 0.4 22 2-23 1-22 (159)
48 2k3y_A Chromatin modification- 92.6 0.042 1.4E-06 39.7 1.5 26 18-43 110-136 (136)
49 1r4v_A Hypothetical protein AQ 54.9 11 0.00037 28.1 3.4 60 52-116 31-90 (171)
50 1wwi_A Hypothetical protein TT 53.7 16 0.00055 26.5 4.1 60 52-116 7-66 (148)
51 4dra_E Centromere protein X; D 51.7 46 0.0016 21.7 5.8 58 54-111 15-74 (84)
52 3b0b_C CENP-X, centromere prot 47.4 54 0.0019 21.1 5.7 58 54-111 11-70 (81)
53 3uk6_A RUVB-like 2; hexameric 41.4 72 0.0025 24.0 6.4 60 57-116 264-329 (368)
54 1h3o_A Transcription initiatio 39.0 40 0.0014 21.7 3.8 47 52-99 7-53 (75)
55 3kw6_A 26S protease regulatory 35.9 13 0.00045 22.6 1.1 40 76-115 28-71 (78)
56 1g8p_A Magnesium-chelatase 38 34.8 89 0.003 23.2 5.9 50 67-116 265-321 (350)
57 3k1j_A LON protease, ATP-depen 32.3 1.2E+02 0.0042 25.2 6.9 50 67-116 312-374 (604)
58 1kn1_B Allophycocyanin; helix- 27.8 61 0.0021 23.1 3.7 32 57-88 112-143 (161)
59 3l0f_B C-phycocyanin beta chai 25.9 60 0.0021 23.5 3.4 32 57-88 113-144 (172)
60 2vml_A Phycocyanin alpha chain 25.2 59 0.002 23.2 3.2 32 57-88 113-144 (162)
61 3ksy_A SOS-1, SON of sevenless 24.7 1.4E+02 0.0049 27.0 6.3 62 52-115 106-167 (1049)
62 1kn1_A Allophycocyanin; helix- 23.3 51 0.0017 23.6 2.5 32 57-88 111-142 (160)
63 2c7l_B Phycoerythrocyanin beta 21.5 90 0.0031 22.5 3.6 31 57-87 113-143 (172)
64 1xg0_C B-phycoerythrin beta ch 20.7 88 0.003 22.8 3.4 32 57-88 113-144 (177)
No 1
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=100.00 E-value=4.4e-56 Score=326.04 Aligned_cols=121 Identities=79% Similarity=1.079 Sum_probs=77.8
Q ss_pred CCCccccccccCCCCCCchhhhhhhhhhccCCCCCCCCcccCCCCCCCcC-------------C--chHHHHHHHHHhhh
Q 048641 1 MARMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLE-------------R--DLKRLVREIAQDFK 65 (121)
Q Consensus 1 MartK~~a~kstg~kaprk~~~~k~~~ks~p~~~~~kk~~r~rpgt~alr-------------r--pF~RLVreI~~~~~ 65 (121)
||||||+|+|++|||+|+|+++++++++++|+++++++||||+|||++|+ + ||+||||||+++|+
T Consensus 1 MARtk~tarkstggkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~ 80 (136)
T 1tzy_C 1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 80 (136)
T ss_dssp -----------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHC
T ss_pred CCCCccccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999998 4 99999999999999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccCC
Q 048641 66 TDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 121 (121)
Q Consensus 66 ~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~~ 121 (121)
+|+|||++||+|||||+|+|||+||||+|+||+||||||||++|||||++|||+++
T Consensus 81 ~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 136 (136)
T 1tzy_C 81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 136 (136)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCCC
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999999863
No 2
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=100.00 E-value=2.9e-42 Score=241.51 Aligned_cols=81 Identities=56% Similarity=0.819 Sum_probs=63.7
Q ss_pred CCcccCCCCCCCcC-------------C--chHHHHHHHHHhhhc---cccchHHHHHHHHHHHHHHHHHHhhhhhHhhh
Q 048641 37 EETTPFQAGNSGLE-------------R--DLKRLVREIAQDFKT---DMRFQSSAVAALQEAAEAYLVGLFEDTNLCAI 98 (121)
Q Consensus 37 kk~~r~rpgt~alr-------------r--pF~RLVreI~~~~~~---~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~ 98 (121)
++||||+|||+||+ + ||+||||||+++|++ ++|||++|++|||||+|+|||+||||+|+||+
T Consensus 2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~ 81 (100)
T 2yfv_A 2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLAL 81 (100)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999998 5 999999999999987 89999999999999999999999999999999
Q ss_pred hcCccccCcccHHHHHHHh
Q 048641 99 HAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 99 hakRvTi~~kDi~la~rir 117 (121)
||||||||++|||||++||
T Consensus 82 HAkRvTi~~kDiqLa~rir 100 (100)
T 2yfv_A 82 HAKRITIMRKDMQLARRIR 100 (100)
T ss_dssp HTTCSEECHHHHHHHHHCC
T ss_pred HcCCccCCHHHHHHHHHhC
Confidence 9999999999999999986
No 3
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.2e-42 Score=256.80 Aligned_cols=97 Identities=48% Similarity=0.688 Sum_probs=67.7
Q ss_pred hhhhhhhccCCCCCCCCc-ccCCCCCCCcC-------------C--chHHHHHHHHHhhh--ccccchHHHHHHHHHHHH
Q 048641 22 ATKAARKVRSSNGRSEET-TPFQAGNSGLE-------------R--DLKRLVREIAQDFK--TDMRFQSSAVAALQEAAE 83 (121)
Q Consensus 22 ~~k~~~ks~p~~~~~kk~-~r~rpgt~alr-------------r--pF~RLVreI~~~~~--~~~rf~~~Al~aLQeaaE 83 (121)
+++++++++|.+|+++++ +||+||+ |+ + ||+||||||+++|+ .++|||++||+|||||+|
T Consensus 38 ~~~aa~ksap~~g~~~~~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaE 115 (156)
T 3r45_A 38 PTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAE 115 (156)
T ss_dssp ---------------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHH
Confidence 577889999999988766 8899997 65 4 99999999999998 589999999999999999
Q ss_pred HHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccC
Q 048641 84 AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 120 (121)
Q Consensus 84 ~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~ 120 (121)
+|||+||||+|+||+||||||||++|||||++|||+.
T Consensus 116 ayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~~ 152 (156)
T 3r45_A 116 AFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 152 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHcccc
Confidence 9999999999999999999999999999999999973
No 4
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=100.00 E-value=7.8e-42 Score=251.33 Aligned_cols=96 Identities=49% Similarity=0.688 Sum_probs=66.5
Q ss_pred hhhhhhccCCCCCCCCcc-cCCCCCCCcC-------------C--chHHHHHHHHHhhh--ccccchHHHHHHHHHHHHH
Q 048641 23 TKAARKVRSSNGRSEETT-PFQAGNSGLE-------------R--DLKRLVREIAQDFK--TDMRFQSSAVAALQEAAEA 84 (121)
Q Consensus 23 ~k~~~ks~p~~~~~kk~~-r~rpgt~alr-------------r--pF~RLVreI~~~~~--~~~rf~~~Al~aLQeaaE~ 84 (121)
.+++++++|.+|++++++ ||+||+ |+ + ||+||||||+++|+ .++|||++||+|||||+|+
T Consensus 23 ~~aa~~~~~~~g~~~~~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEa 100 (140)
T 3nqu_A 23 TPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEA 100 (140)
T ss_dssp --------------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHH
Confidence 467889999999887654 889997 65 4 99999999999998 5899999999999999999
Q ss_pred HHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccC
Q 048641 85 YLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 120 (121)
Q Consensus 85 ~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~ 120 (121)
|||+||||+|+||+||||||||++|||||++|||+.
T Consensus 101 yLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~~ 136 (140)
T 3nqu_A 101 FLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 136 (140)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHcCcccccHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999974
No 5
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.2e-38 Score=213.56 Aligned_cols=69 Identities=58% Similarity=0.858 Sum_probs=66.2
Q ss_pred chHHHHHHHHHhhh--ccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccC
Q 048641 52 DLKRLVREIAQDFK--TDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 120 (121)
Q Consensus 52 pF~RLVreI~~~~~--~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~ 120 (121)
||+||||||+++|+ +++|||++|++|||||+|+|||+||||+|+||+||||||||++|||||+||||++
T Consensus 8 PF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~ 78 (82)
T 3nqj_A 8 PFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE 78 (82)
T ss_dssp HHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence 99999999999998 6899999999999999999999999999999999999999999999999999985
No 6
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=100.00 E-value=5.8e-38 Score=210.67 Aligned_cols=70 Identities=90% Similarity=1.241 Sum_probs=68.3
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccCC
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 121 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~~ 121 (121)
||+||||||+++|++++|||++|+.|||||+|+|||+||||+|+||+||||||||++|||||++|||+++
T Consensus 8 PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~~~ 77 (77)
T 2hue_B 8 PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 77 (77)
T ss_dssp HHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCC-
T ss_pred hHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999863
No 7
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=233.73 Aligned_cols=69 Identities=65% Similarity=0.968 Sum_probs=67.5
Q ss_pred chHHHHHHHHHhhhc---cccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccC
Q 048641 52 DLKRLVREIAQDFKT---DMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 120 (121)
Q Consensus 52 pF~RLVreI~~~~~~---~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~ 120 (121)
|||||||||+++|++ ++|||++||.|||||+|+|||+||||+|+||+|||||||||+|||||+||||+.
T Consensus 16 PFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~ 87 (235)
T 2l5a_A 16 PFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQF 87 (235)
T ss_dssp HHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSC
T ss_pred cHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhcc
Confidence 999999999999986 899999999999999999999999999999999999999999999999999975
No 8
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.7e-27 Score=171.43 Aligned_cols=68 Identities=53% Similarity=0.792 Sum_probs=64.9
Q ss_pred chHHHHHHHHHhhhc---cccchHHHHHHHHHHHHHHHHHHhhhhhHhhhh-----------------------------
Q 048641 52 DLKRLVREIAQDFKT---DMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIH----------------------------- 99 (121)
Q Consensus 52 pF~RLVreI~~~~~~---~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~h----------------------------- 99 (121)
||+||||||++++++ ++|||++||.|||||+|+|||+||||+|+||+|
T Consensus 6 PF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~~~l~~i~ 85 (121)
T 2ly8_A 6 PFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSFLESVI 85 (121)
T ss_dssp HHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 899999999999999999999999999999998
Q ss_pred ---------cCccccCcccHHHHHHHhcc
Q 048641 100 ---------AKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 100 ---------akRvTi~~kDi~la~rirg~ 119 (121)
|+|.||+..||.++.+-.|.
T Consensus 86 rdav~yaehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 86 RDSVTYTEHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp HHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence 68889999999999988875
No 9
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.80 E-value=2.7e-20 Score=120.30 Aligned_cols=60 Identities=28% Similarity=0.342 Sum_probs=57.5
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 116 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ri 116 (121)
||+||+||+ ++.+|+++|+.+||+++|.|++.||+|+|.||.|+||+||+++||++|++.
T Consensus 7 ~v~Ri~k~~-----~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 7 PIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp HHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred HHHHHHhcC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 899999998 579999999999999999999999999999999999999999999999764
No 10
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.63 E-value=2.4e-16 Score=102.48 Aligned_cols=59 Identities=31% Similarity=0.380 Sum_probs=56.2
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
||.||+|+. ...||+++|+++|||++|.|+..+++|++.||.|+||.||+++|++|+.+
T Consensus 11 ~v~Rl~r~~-----g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 11 PVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHc-----CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 999999986 46899999999999999999999999999999999999999999999964
No 11
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.37 E-value=4.4e-13 Score=91.24 Aligned_cols=64 Identities=19% Similarity=0.262 Sum_probs=58.0
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhc
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 118 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg 118 (121)
|+.|+++++.. .+.+|+.+|+.+||+++|.|+..|+++|+.||.|++|.||+++||..|.+-.|
T Consensus 13 ~i~ri~K~~~~---~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~ 76 (93)
T 1n1j_A 13 NVARIMKNAIP---QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLG 76 (93)
T ss_dssp HHHHHHHHTSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTT
T ss_pred HHHHHHHHhCC---ccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 88888888754 35899999999999999999999999999999999999999999999987443
No 12
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=99.01 E-value=6.3e-10 Score=80.28 Aligned_cols=66 Identities=20% Similarity=0.226 Sum_probs=64.8
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
.|..+|+.|+.++++|+++++.|+..|....+|++..+-.++..++.|+||.||+.+|||.|.||.
T Consensus 37 sy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 102 (126)
T 1tzy_B 37 SYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL 102 (126)
T ss_dssp CCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999999999985
No 13
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=98.95 E-value=1.3e-10 Score=95.19 Aligned_cols=48 Identities=40% Similarity=0.482 Sum_probs=11.5
Q ss_pred CccccccccCCCCCCchhhhhhhhhhccCCCCCCCCcccCCCCCCCcC
Q 048641 3 RMKQTARKSTGGKAPRKQLATKAARKVRSSNGRSEETTPFQAGNSGLE 50 (121)
Q Consensus 3 rtK~~a~kstg~kaprk~~~~k~~~ks~p~~~~~kk~~r~rpgt~alr 50 (121)
||||+|+|++||++|+|++++++++++.|.++++++||||+|||+|+.
T Consensus 3 ~tk~tarkstggkaprk~~~~k~~rk~~~~~~~~kkp~R~rPGt~a~~ 50 (361)
T 2r10_A 3 DPFTTARKSTGGKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKN 50 (361)
T ss_dssp ------------------------------------CCSSCCSCCBCC
T ss_pred cccccccCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCccccc
Confidence 799999999999999999999999998888899999999999999987
No 14
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.94 E-value=1.6e-09 Score=77.95 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=64.8
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
.|..+|+.|+.++++|+++++.|+..|....+|++..+-.++..++.|+||.||+.+|||.|.||.
T Consensus 34 sy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl 99 (123)
T 2nqb_D 34 SYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL 99 (123)
T ss_dssp CSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence 899999999999999999999999999999999999999999999999999999999999999985
No 15
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.73 E-value=1.3e-08 Score=70.51 Aligned_cols=64 Identities=22% Similarity=0.319 Sum_probs=54.6
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccC
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 120 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~ 120 (121)
+..||.+ ...- -|++.+|.+.|++..|.|+..+.+|+..++-|++|-||++.||++|.+-.|+.
T Consensus 34 ~I~Rlar----~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~ 97 (103)
T 2yfw_B 34 AIRRLAR----RGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRT 97 (103)
T ss_dssp HHHHHHH----HTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC--
T ss_pred HHHHHHH----HcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCC
Confidence 5555554 3333 59999999999999999999999999999999999999999999999987753
No 16
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.71 E-value=1.8e-08 Score=69.80 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=55.0
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
+..||. ....- -|++.+|.+.|++..|.|+..+.+|+..++-|++|-||++.||++|.+-.|+
T Consensus 34 ~I~Rla----r~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~ 96 (103)
T 1tzy_D 34 AIRRLA----RRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 96 (103)
T ss_dssp HHHHHH----HHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred HHHHHH----HHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCC
Confidence 555554 44433 5999999999999999999999999999999999999999999999997775
No 17
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.67 E-value=2.5e-08 Score=65.49 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=53.6
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHH
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 116 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ri 116 (121)
|..|+.+..++.+++.+|.++|++++|.|+..|-.+|+..+.|.+|-||..+||+.|.+.
T Consensus 10 V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 10 LRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp HHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 344555555689999999999999999999999999999999999999999999998875
No 18
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.64 E-value=5.2e-08 Score=68.50 Aligned_cols=63 Identities=22% Similarity=0.351 Sum_probs=56.9
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 56 LVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 56 LVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
.|+.|+..+ ...+++.+++++|+++.+.|+..+..|++..|-||+|.||+..|+.++.+-.|.
T Consensus 12 ~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 12 LIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp HHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred HHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 466677766 568999999999999999999999999999999999999999999999886654
No 19
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.58 E-value=7.5e-08 Score=66.81 Aligned_cols=64 Identities=22% Similarity=0.313 Sum_probs=56.4
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhccC
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER 120 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~~ 120 (121)
|..||.+.. ...|++.+|.++|++..|.|+..+.+|+..++-|++|-||+..||.+|++-.|+.
T Consensus 33 ~I~Rlar~~-----Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~ 96 (102)
T 1id3_B 33 AIRRLARRG-----GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRT 96 (102)
T ss_dssp HHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCC
T ss_pred HHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCC
Confidence 656666543 3479999999999999999999999999999999999999999999999987753
No 20
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.51 E-value=1.4e-07 Score=66.96 Aligned_cols=62 Identities=32% Similarity=0.423 Sum_probs=53.6
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
...|+|++...+. +..++.+++.+|-|.++.|+..+-.|+...|-||+|.||.+.|+.|+.|
T Consensus 32 ~V~rIvke~gaer--~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~R 93 (113)
T 4dra_A 32 TVGCLCEEVALDK--EMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLAR 93 (113)
T ss_dssp HHHHHHHHHHHHH--TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 3445666655543 5679999999999999999999999999999999999999999999865
No 21
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.51 E-value=8.3e-08 Score=64.18 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=54.3
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
|+.|+... ...|++.+|.++|++..|.|+..+.+|+..++-|++|-||+..|+.+|.+-.|+
T Consensus 16 I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~ 77 (84)
T 2hue_C 16 IRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGR 77 (84)
T ss_dssp HHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCE
T ss_pred HHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCC
Confidence 44444544 347999999999999999999999999999999999999999999999887765
No 22
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.50 E-value=3.2e-07 Score=59.65 Aligned_cols=62 Identities=23% Similarity=0.437 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 55 RLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 55 RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
++|..|+.+..- -+|+..++..|-|.+|.|..++..|+..+|-||+|.||...|++||...+
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 567777777653 49999999999999999999999999999999999999999999998765
No 23
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.45 E-value=2.6e-07 Score=63.05 Aligned_cols=60 Identities=27% Similarity=0.231 Sum_probs=51.9
Q ss_pred HHHHHHHhhh--ccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 56 LVREIAQDFK--TDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 56 LVreI~~~~~--~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
-|-.|+++.. .+..|+.+++.+|-|.++.|+..+-.|+...|-||+|.||.+.|+.|+.|
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~R 78 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLR 78 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 3455555542 24789999999999999999999999999999999999999999999865
No 24
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.41 E-value=2.5e-07 Score=64.94 Aligned_cols=60 Identities=32% Similarity=0.419 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 54 KRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 54 ~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
.|++++...+ .+.+++.+++.+|-|.++.|+..+..|+...|-||+|.||...|+.|+.|
T Consensus 26 ~rI~~~~g~~--~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~R 85 (107)
T 3b0b_B 26 GCLCQDVAED--KGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLAR 85 (107)
T ss_dssp HHHHHHHHHH--HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred HHHHHHHhhh--cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHH
Confidence 3455554442 35799999999999999999999999999999999999999999999875
No 25
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.41 E-value=3e-07 Score=67.31 Aligned_cols=59 Identities=32% Similarity=0.397 Sum_probs=51.8
Q ss_pred HHHHHHhhh--ccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 57 VREIAQDFK--TDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 57 VreI~~~~~--~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|-.|+++.. .++.|+.+++.+|-|.++.|+..+-.|+...|-||+|.||.+.||.|+.|
T Consensus 25 VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~R 85 (140)
T 3vh5_A 25 TGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLAR 85 (140)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 444555442 36789999999999999999999999999999999999999999999976
No 26
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.35 E-value=8.7e-07 Score=67.25 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=63.7
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIR 117 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rir 117 (121)
.|..+++.|+.+.++|.+++.+|+..|....++++..+-.++..++.|.+|.||+++|||.+.+|-
T Consensus 4 ~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 4 TYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp TTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999999999999999999999999999874
No 27
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.29 E-value=1.1e-06 Score=65.08 Aligned_cols=60 Identities=20% Similarity=0.114 Sum_probs=55.2
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 116 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ri 116 (121)
|..|+.|+- ...|++++|-++|+++.|.|+..+.++|+..|.|++|.||++.||++|.+.
T Consensus 87 ~V~Ri~k~~-----g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 87 TVRRILKRA-----GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp HHHHHHHHT-----TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 777777775 567999999999999999999999999999999999999999999999765
No 28
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.24 E-value=1.9e-06 Score=56.31 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=51.9
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHH
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 116 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ri 116 (121)
|+.|++...- -+.+.+|..+|-+-.|.++-.+.+++..|+.|+||-||+..||.+|.++
T Consensus 12 v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk~ 70 (70)
T 1taf_B 12 MKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLKV 70 (70)
T ss_dssp HHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC-
T ss_pred HHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHcC
Confidence 5666676642 3889999999999999999999999999999999999999999999763
No 29
>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B*
Probab=98.20 E-value=3.6e-07 Score=48.33 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=20.7
Q ss_pred hhhhhccCCCCCCCCcccCCCCCCC
Q 048641 24 KAARKVRSSNGRSEETTPFQAGNSG 48 (121)
Q Consensus 24 k~~~ks~p~~~~~kk~~r~rpgt~a 48 (121)
+++++++|.+++++++|||+|||+|
T Consensus 2 k~ark~~p~~~~~kk~~RyRPGtvA 26 (26)
T 2x4w_B 2 KAARKSAPATGGVXKPHRYRXXXXX 26 (26)
T ss_pred CccccCCCCCCccccccccccccCC
Confidence 3455677888899999999999986
No 30
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.12 E-value=4.7e-06 Score=61.71 Aligned_cols=64 Identities=9% Similarity=0.091 Sum_probs=55.1
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
|..|++|+-+ +..|++.+|-++|+++.|.|+..+-.+|+-.|.|++|.||++.|+..+..-+|-
T Consensus 9 ~V~Riik~~l----g~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~ 72 (154)
T 1f1e_A 9 AIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMV 72 (154)
T ss_dssp HHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTC
T ss_pred HHHHHHHhcC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhccc
Confidence 4455555443 458999999999999999999999999999999999999999999999866553
No 31
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.09 E-value=4e-06 Score=57.24 Aligned_cols=63 Identities=21% Similarity=0.213 Sum_probs=55.4
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|..|. +.|++.-...-+++.+|..+|..|+|.|+..|.+.|+.+|.+.||.||.++||++|.+
T Consensus 21 P~arI-krImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~ 83 (97)
T 1n1j_B 21 PLARI-KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT 83 (97)
T ss_dssp CHHHH-HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred CHHHH-HHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHh
Confidence 66664 6777765444689999999999999999999999999999999999999999999864
No 32
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=98.02 E-value=8e-06 Score=57.76 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=57.4
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|..| |+.|++.-....+++.+|..++..|+|.|+..|.+.|+.+|...||.||+++||..|.+
T Consensus 43 PvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~ 105 (119)
T 4g92_C 43 PLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALS 105 (119)
T ss_dssp CHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred CHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHh
Confidence 8888 78888865555799999999999999999999999999999999999999999999864
No 33
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.96 E-value=1.6e-05 Score=57.05 Aligned_cols=62 Identities=18% Similarity=0.159 Sum_probs=53.4
Q ss_pred HHHHHHhh-hccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhc
Q 048641 57 VREIAQDF-KTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 118 (121)
Q Consensus 57 VreI~~~~-~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg 118 (121)
|+.|+.+. ....+++.+|..+|++++|.|+..|-..|+..+.|.+|.||...||..|..-.|
T Consensus 15 I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 15 IGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELD 77 (128)
T ss_dssp HHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 34455543 346899999999999999999999999999999999999999999999876544
No 34
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.84 E-value=3.4e-05 Score=58.40 Aligned_cols=63 Identities=14% Similarity=0.271 Sum_probs=55.8
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhc
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 118 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg 118 (121)
+..|+++++.. +.+++.+|.++|+++++.|+.-|-..||-.+.|.+|.||...||..|..=.|
T Consensus 20 ~V~RImK~alp----~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~Lg 82 (179)
T 1jfi_B 20 AINKMIKETLP----NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLG 82 (179)
T ss_dssp HHHHHHHHHST----TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcC
Confidence 66677776653 6899999999999999999999999999999999999999999999876444
No 35
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.64 E-value=3.5e-05 Score=52.71 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=51.8
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|..|. +.|++.-...-++..+|...|-.+.|.|+..|.+.+..+|.+.+|-||.++||+++.+
T Consensus 13 PvaRI-krimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~ 75 (98)
T 1jfi_A 13 PPARI-KKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIE 75 (98)
T ss_dssp CHHHH-HHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC
T ss_pred ChHHH-HHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHh
Confidence 76764 6677754443699999999999999999999999999999999999999999998753
No 36
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.48 E-value=0.00027 Score=46.67 Aligned_cols=60 Identities=25% Similarity=0.355 Sum_probs=53.4
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
-.+.||++| .+...+..++-+.|.+.|++|+.+..+.+-.+|.|-+--||.++|+||...
T Consensus 10 ~L~~Lv~~i----dp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Le 69 (76)
T 1h3o_B 10 KLQDLVREV----DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLE 69 (76)
T ss_dssp HHHHHHHHH----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 455666666 467899999999999999999999999999999999999999999999854
No 37
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=97.22 E-value=0.00025 Score=51.53 Aligned_cols=63 Identities=11% Similarity=0.063 Sum_probs=49.9
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhh-hhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCA-IHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a-~hakRvTi~~kDi~la~r 115 (121)
|..| |+.|++.-...-++..+|..++..|+|-|+..|.+.|+.++ ...||-||.++||..|..
T Consensus 21 PlaR-IKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~ 84 (140)
T 2byk_A 21 PLSR-VRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN 84 (140)
T ss_dssp ---------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred CHHH-HHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHh
Confidence 6666 47777765444689999999999999999999999999999 999999999999999875
No 38
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.0004 Score=54.52 Aligned_cols=67 Identities=19% Similarity=0.310 Sum_probs=59.7
Q ss_pred chHHHHHHHHHhhh--------ccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHHhcc
Q 048641 52 DLKRLVREIAQDFK--------TDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE 119 (121)
Q Consensus 52 pF~RLVreI~~~~~--------~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~rirg~ 119 (121)
+...+++++.+ .. .--|++.++.+.+.++.|.||..+..||...+-||+|.||++.|+.+|.+-.|.
T Consensus 154 r~~~vLrD~i~-i~~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~gr 228 (235)
T 2l5a_A 154 KYTSVLRDIID-ISDEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 228 (235)
T ss_dssp THHHHHHHHHH-HTCCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhc-ccHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcCC
Confidence 67788888887 42 235899999999999999999999999999999999999999999999987764
No 39
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=97.05 E-value=0.0011 Score=47.15 Aligned_cols=63 Identities=24% Similarity=0.262 Sum_probs=52.1
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|..|+-|=+ ++-....|+.++|-..|-.+-|.+...++|.+...|.|+++.+|+|+||+||.+
T Consensus 25 PV~ri~R~L-k~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 87 (123)
T 2nqb_C 25 PVGRIHRLL-RKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIR 87 (123)
T ss_dssp CHHHHHHHH-HHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cHHHHHHHH-HccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHh
Confidence 555544333 333333599999999999999999999999999999999999999999999976
No 40
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=97.00 E-value=0.0012 Score=46.68 Aligned_cols=49 Identities=20% Similarity=0.179 Sum_probs=46.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 67 DMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 67 ~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
..|+..+|-..|-..-|.+...++|.+...|.|+++.+|+|+||+||.+
T Consensus 38 a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~ 86 (120)
T 2f8n_G 38 KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVA 86 (120)
T ss_dssp SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 3599999999999999999999999999999999999999999999975
No 41
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=96.98 E-value=0.0013 Score=47.08 Aligned_cols=63 Identities=24% Similarity=0.259 Sum_probs=52.2
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|..|+-|=+ ++-....|+.++|-..|-.+-|.+...++|.+...|.|+++.+|+|+||+||.+
T Consensus 27 PV~rI~R~L-k~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~ 89 (129)
T 1tzy_A 27 PVGRVHRLL-RKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (129)
T ss_dssp CHHHHHHHH-HHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cHHHHHHHH-HccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 555544333 333233599999999999999999999999999999999999999999999975
No 42
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=96.83 E-value=0.0014 Score=47.12 Aligned_cols=63 Identities=25% Similarity=0.272 Sum_probs=52.4
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|-.|+-|-+ ++-....|+..+|-..|-.+-|.+...++|.+...|.|+++.+|+|+||+||.+
T Consensus 27 PV~rI~R~L-k~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~ 89 (131)
T 1id3_C 27 PVGRVHRLL-RRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIR 89 (131)
T ss_dssp CHHHHHHHH-HTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CHHHHHHHH-HccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHh
Confidence 555544433 433333499999999999999999999999999999999999999999999976
No 43
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=96.83 E-value=0.0016 Score=47.84 Aligned_cols=63 Identities=24% Similarity=0.263 Sum_probs=52.4
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|..|+-|-+ ++-....|+..+|-..|-..-|.+...++|.+...|.|+++.+|+|+||+||.+
T Consensus 46 PVgrI~R~L-K~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~ 108 (149)
T 2f8n_K 46 PVGRVHRLL-RKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIR 108 (149)
T ss_dssp CHHHHHHHH-HHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cHHHHHHHH-HccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHh
Confidence 555544433 433333599999999999999999999999999999999999999999999976
No 44
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=96.76 E-value=0.0026 Score=45.54 Aligned_cols=63 Identities=21% Similarity=0.215 Sum_probs=51.8
Q ss_pred chHHHHHHHHHhhh-ccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFK-TDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~-~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|..|+-|=+ ++-. ...|+.++|-..|-..-|.+...++|.+.-.|.|.++.+|+|+||+||.+
T Consensus 29 PV~ri~R~L-k~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~ 92 (128)
T 1f66_C 29 PVGRIHRHL-KSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR 92 (128)
T ss_dssp CHHHHHHHH-HHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHH
T ss_pred ChHHHHHHH-HHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHh
Confidence 555544433 3322 23599999999999999999999999999999999999999999999975
No 45
>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
Probab=96.10 E-value=0.0014 Score=34.25 Aligned_cols=25 Identities=44% Similarity=0.492 Sum_probs=20.8
Q ss_pred chhhhhhhhhhccCCCCCCCCcccC
Q 048641 18 RKQLATKAARKVRSSNGRSEETTPF 42 (121)
Q Consensus 18 rk~~~~k~~~ks~p~~~~~kk~~r~ 42 (121)
+|+++++++++++|.++++++|||.
T Consensus 1 rK~la~Kaarks~p~~~g~kk~hR~ 25 (26)
T 3avr_B 1 RKQLATKAARXSAPATGGVKKPXXX 25 (26)
T ss_pred CcccccccccCCCCCCccccccCCC
Confidence 4677888888888889999999985
No 46
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.02 E-value=0.0087 Score=45.09 Aligned_cols=49 Identities=29% Similarity=0.247 Sum_probs=46.3
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 67 DMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 67 ~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
..|+..+|-..|-..-|.+...++|.+...|.|+++.+|+|+||+||.+
T Consensus 122 ~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~ 170 (192)
T 2jss_A 122 RTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIR 170 (192)
T ss_dssp SCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred ccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 3689999999999999999999999999999999999999999999965
No 47
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=94.78 E-value=0.0061 Score=45.24 Aligned_cols=22 Identities=86% Similarity=1.063 Sum_probs=13.1
Q ss_pred CCccccccccCCCCCCchhhhh
Q 048641 2 ARMKQTARKSTGGKAPRKQLAT 23 (121)
Q Consensus 2 artK~~a~kstg~kaprk~~~~ 23 (121)
|||||+|+|++|||++.+++..
T Consensus 1 ~~~~~~~r~s~~~K~~~~~~r~ 22 (159)
T 3a1b_A 1 ARTKQTARKSTGGKAPRKQLRE 22 (159)
T ss_dssp CEEEECCCC-------CHHHHH
T ss_pred CccccccccccCCCcchHHHHH
Confidence 7999999999999999999843
No 48
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=92.57 E-value=0.042 Score=39.74 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=20.1
Q ss_pred chhhhhhh-hhhccCCCCCCCCcccCC
Q 048641 18 RKQLATKA-ARKVRSSNGRSEETTPFQ 43 (121)
Q Consensus 18 rk~~~~k~-~~ks~p~~~~~kk~~r~r 43 (121)
+++|..+. +.+|+|.+||+|+|||||
T Consensus 110 qKeL~~kak~~Ks~p~tgGvkk~hr~r 136 (136)
T 2k3y_A 110 KKRLANEAGSTGSAPATGGVXKPHRYR 136 (136)
T ss_dssp HHHHHHHSCSCCCSTTCTTSCCCSSCC
T ss_pred HHHHHHHHHhhccCCCCCCccCCCcCC
Confidence 35555554 368899999999999997
No 49
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=54.87 E-value=11 Score=28.09 Aligned_cols=60 Identities=17% Similarity=0.217 Sum_probs=51.9
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 116 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ri 116 (121)
-|++|.|+-+. +-...+=+.=+-+.+|.-|-+||+-+..-|-...|=.|.+.|+.+-..+
T Consensus 31 kferlFR~aag-----LDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DLPITKGl 90 (171)
T 1r4v_A 31 KLDHYFRTELD-----IDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADLNITKAL 90 (171)
T ss_dssp HHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGSCCCHHH
T ss_pred HHHHHHHHHhc-----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHHH
Confidence 78899988874 5566777788889999999999999999999999999999998765544
No 50
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=53.66 E-value=16 Score=26.50 Aligned_cols=60 Identities=18% Similarity=0.269 Sum_probs=48.4
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 116 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ri 116 (121)
-|+++.|+-+. +-...+=+.=+-+.+|.-|.+||+-++.-|-...|=.|.+.|+.+-..+
T Consensus 7 ~~e~lFR~aa~-----LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DLPITkGl 66 (148)
T 1wwi_A 7 EFERLFRQAAG-----LDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDLPIAKGL 66 (148)
T ss_dssp HHHHHHHHHHC-----CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGSCCCHHH
T ss_pred HHHHHHHHHhc-----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccCCccHHH
Confidence 37788887764 4444555666778999999999999999999999999999998765544
No 51
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=51.72 E-value=46 Score=21.73 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhh--ccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHH
Q 048641 54 KRLVREIAQDFK--TDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 111 (121)
Q Consensus 54 ~RLVreI~~~~~--~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~ 111 (121)
..||.+|.+.+- ..++++.+|+.++++-.+-|...-+.-+..-|---.-.+|...|+.
T Consensus 15 ~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LE 74 (84)
T 4dra_E 15 KELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLE 74 (84)
T ss_dssp HHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHH
T ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 468888888642 6799999999988887776665554443332221224456666654
No 52
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=47.43 E-value=54 Score=21.13 Aligned_cols=58 Identities=10% Similarity=0.058 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhh--ccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHH
Q 048641 54 KRLVREIAQDFK--TDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 111 (121)
Q Consensus 54 ~RLVreI~~~~~--~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~ 111 (121)
..||..|.+... ...|++++|+.++.|--+-|...-+.-|..-|---.-..|...|+.
T Consensus 11 ~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LE 70 (81)
T 3b0b_C 11 KETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVE 70 (81)
T ss_dssp HHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHH
Confidence 367888888753 4789999999888877766666555444333221233345555553
No 53
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=41.45 E-value=72 Score=23.98 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=47.0
Q ss_pred HHHHHHhhh--ccccchHHHHHHHHHHHH----HHHHHHhhhhhHhhhhcCccccCcccHHHHHHH
Q 048641 57 VREIAQDFK--TDMRFQSSAVAALQEAAE----AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 116 (121)
Q Consensus 57 VreI~~~~~--~~~rf~~~Al~aLQeaaE----~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ri 116 (121)
+++|+...- .+..|..+++..|-+.++ .++..+++.+...|.-..+-.|...|+.-+...
T Consensus 264 ~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 264 TKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 445554332 457799999999998887 388899999988888888889999999887654
No 54
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=39.02 E-value=40 Score=21.65 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=36.2
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhh
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIH 99 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~h 99 (121)
|.|+=+.||+..+. =--+.++++..+--|+|..|-+|+|.-...|-|
T Consensus 7 ~Lqkri~~I~~k~g-l~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~ 53 (75)
T 1h3o_A 7 PLQRRILEIGKKHG-ITELHPDVVSYVSHATQQRLQNLVEKISETAQQ 53 (75)
T ss_dssp HHHHHHHHHHHTTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhcC-CCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 77888889998753 135788999999999999999999987776666
No 55
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=35.91 E-value=13 Score=22.64 Aligned_cols=40 Identities=20% Similarity=0.384 Sum_probs=30.6
Q ss_pred HHHHHHHH----HHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 76 AALQEAAE----AYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 76 ~aLQeaaE----~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
..|-+.+| +=|..+..++.+.|+...+..|+..|+.-|..
T Consensus 28 ~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~ 71 (78)
T 3kw6_A 28 RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 71 (78)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 34444455 44888888999999999999999999987753
No 56
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=34.76 E-value=89 Score=23.16 Aligned_cols=50 Identities=8% Similarity=0.019 Sum_probs=39.8
Q ss_pred cccchHHHHHHHHHHHHH-------HHHHHhhhhhHhhhhcCccccCcccHHHHHHH
Q 048641 67 DMRFQSSAVAALQEAAEA-------YLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 116 (121)
Q Consensus 67 ~~rf~~~Al~aLQeaaE~-------~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ri 116 (121)
++.|..+++..|.+.+.. .+..+.+.+...|.-..+-+|.+.|+.-+..+
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 458999999998887764 56778887777777778888999999877654
No 57
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=32.35 E-value=1.2e+02 Score=25.25 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=40.2
Q ss_pred cccchHHHHHHHHHHH-------------HHHHHHHhhhhhHhhhhcCccccCcccHHHHHHH
Q 048641 67 DMRFQSSAVAALQEAA-------------EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI 116 (121)
Q Consensus 67 ~~rf~~~Al~aLQeaa-------------E~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~ri 116 (121)
...|+.+|+..|.+.+ ...|.++.+.+...|....+-.|...|++-|...
T Consensus 312 ~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 312 IPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 3589999999988754 4578888888888887778888999999888653
No 58
>1kn1_B Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 1all_B* 3dbj_B* 2v8a_B* 1b33_B* 2vjt_B*
Probab=27.79 E-value=61 Score=23.11 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=26.0
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHH
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVG 88 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~ 88 (121)
+|||.+.+..+.-+...+|..|++++..+|..
T Consensus 112 lreiy~algvp~~~~~~~~~~mk~~~~~~l~~ 143 (161)
T 1kn1_B 112 LKETYNSLGVPIGATIQAIQAMKEVTSGLVGP 143 (161)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHHcCH
Confidence 47888888777888889999999988877654
No 59
>3l0f_B C-phycocyanin beta chain; photosynthesis, photosystem II, light harvesting proteins, thermostability, bIle pigment; HET: CYC; 1.35A {Thermosynechococcus elongatus} SCOP: a.1.1.3 PDB: 1i7y_B* 1ktp_B* 1on7_B* 1jbo_B* 3o18_B* 3o2c_B* 1phn_B* 3kvs_B* 3brp_B* 1gh0_B* 1cpc_B* 1ha7_B* 2bv8_B* 2uul_D* 2uum_X* 1f99_B* 2uum_B* 2uul_B* 2uun_B* 2uul_H* ...
Probab=25.89 E-value=60 Score=23.53 Aligned_cols=32 Identities=25% Similarity=0.178 Sum_probs=24.9
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHH
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVG 88 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~ 88 (121)
+|||.+.+..+..+...|+..|++++-+||..
T Consensus 113 lrE~y~algvp~~~~v~al~~mk~~~~~~~~~ 144 (172)
T 3l0f_B 113 LRETYQALGTPGSSVAVAIQKMKDAAIAIAND 144 (172)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHcCc
Confidence 47888877777888888899999888766543
No 60
>2vml_A Phycocyanin alpha chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_A*
Probab=25.16 E-value=59 Score=23.23 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=24.2
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHH
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVG 88 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~ 88 (121)
+|||.+.+..+.-+...++..|++++..+|..
T Consensus 113 lreiy~algvp~~~~~~a~~~mk~~~~~~l~~ 144 (162)
T 2vml_A 113 LREVNRTFNLSPSWYIEALKHIKGKVGSQLSG 144 (162)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHcCH
Confidence 47777777766777778888899988776644
No 61
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=24.70 E-value=1.4e+02 Score=27.01 Aligned_cols=62 Identities=8% Similarity=0.122 Sum_probs=48.7
Q ss_pred chHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhhHhhhhcCccccCcccHHHHHH
Q 048641 52 DLKRLVREIAQDFKTDMRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 115 (121)
Q Consensus 52 pF~RLVreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~lfe~a~l~a~hakRvTi~~kDi~la~r 115 (121)
|-.|.=|-+ ... ...|..+.|-.=|--.-|.....++|-|.-.+...++..|.|+|+++|.+
T Consensus 106 pv~~~~~~l-~~~-~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 106 PVEKIHPLL-KEV-LGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp CHHHHHHHH-HHH-HCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred cHHHHHHHh-hcc-cccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 777766666 322 23488888877777777888888999998888889999999999999975
No 62
>1kn1_A Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 3dbj_A* 2v8a_A* 1b33_A* 2vjt_A* 1all_A*
Probab=23.27 E-value=51 Score=23.56 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=25.0
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHH
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVG 88 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~ 88 (121)
+|||.+.+..+.-+...+|..|++++..+|..
T Consensus 111 lreiy~algvp~~~~~~~~~~mk~~~~~~l~~ 142 (160)
T 1kn1_A 111 VREMYKSLGTPISAVAEGVKCMKSVASSLLSG 142 (160)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHcCH
Confidence 47888877777888889999999988766544
No 63
>2c7l_B Phycoerythrocyanin beta chain; phycoviolobilin, phycocyanobilin, bIle pigment, chromophore, electron transport, photosynthesis; HET: BLA CYC; 2.85A {Mastigocladus laminosus} PDB: 2c7k_B* 2c7j_B*
Probab=21.48 E-value=90 Score=22.55 Aligned_cols=31 Identities=26% Similarity=0.177 Sum_probs=24.1
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHH
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLV 87 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv 87 (121)
+|||.+.+..+.-+...++..|++++.++|.
T Consensus 113 lrE~y~algvp~~~~~~a~~~mk~~~~~~l~ 143 (172)
T 2c7l_B 113 LRETYQALGTPGDAVASGIKKMKEAALKIAN 143 (172)
T ss_dssp HHHHHHHHTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHh
Confidence 5777777776677777888889998887764
No 64
>1xg0_C B-phycoerythrin beta chain; light-harvesting protein, cryptophyte, photosynthesis; HET: LYZ DBV PEB; 0.97A {Rhodomonas SP} SCOP: a.1.1.3 PDB: 1qgw_C* 1xf6_C* 1lia_B* 1eyx_B* 2vjh_B* 1b8d_B*
Probab=20.69 E-value=88 Score=22.75 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=24.5
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHHHHH
Q 048641 57 VREIAQDFKTDMRFQSSAVAALQEAAEAYLVG 88 (121)
Q Consensus 57 VreI~~~~~~~~rf~~~Al~aLQeaaE~~Lv~ 88 (121)
+|||.+.+..+.-+...++..|++++.++|..
T Consensus 113 lrEiy~algvp~~~~~~a~~~mk~~~~~~l~~ 144 (177)
T 1xg0_C 113 LKETYSSLGVPANSNARAVSIMKACAVAFVNN 144 (177)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHhcc
Confidence 57777777666777788888899988887754
Done!