BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048642
(782 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 459 bits (1180), Expect = e-129, Method: Compositional matrix adjust.
Identities = 267/661 (40%), Positives = 380/661 (57%), Gaps = 51/661 (7%)
Query: 118 TTRSWDFMLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWK 177
TTRSWDF+ + + + +I++ LDTG+WPES SF DEG+ P P +WK
Sbjct: 1 TTRSWDFLGFP-------LTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWK 53
Query: 178 GTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGG 237
GTC+ T RCNRK+IGAR +Y IS N RD GHGTHT STA G
Sbjct: 54 GTCE--TSNNFRCNRKIIGAR-------SYHIGRPISPGDVNGPRDTNGHGTHTASTAAG 104
Query: 238 NLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVI 297
LV N++G+G GTA+GG P AR+AAYKVCW +DG C D DIL +D AI DGVD+I
Sbjct: 105 GLVSQANLYGLGLGTARGGVPLARIAAYKVCW---NDG-CSDTDILAAYDDAIADGVDII 160
Query: 298 SVSLGG-DPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTL 356
S+S+GG +P YF D AIG+FHAV+ GI+ SA N GP T ++SPW+++V AST+
Sbjct: 161 SLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTM 220
Query: 357 DREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQXXXXXXXXXXXSLCKNGALDHE 416
DR+F V++ NGQ F+G S++ ++ +YPL++G C + +++
Sbjct: 221 DRKFVTQVQIGNGQSFQGVSINTF--DNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPN 278
Query: 417 KVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDG 476
+KGKI+VC + + ++ GA G+++ +S AD + LP+S + D
Sbjct: 279 LLKGKIVVC---EASFGPHEFFKSLDGAAGVLM----TSNTRDYADSYPLPSSVLDPNDL 331
Query: 477 VKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNXX 536
+ L YI S +P I +T LNA +P + SFSS GPN+ T +++KPDI+ PGV
Sbjct: 332 LATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATKDVIKPDISGPGVEIL 390
Query: 537 XXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTT 596
+ R +NI+SGTSMSCPH+ G+ +KT +P WSP+AI+SA+MTT
Sbjct: 391 AAWPSVAPVGGI---RRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTT 447
Query: 597 ARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQT 656
A + NP + F+YGSGH+ P +A+ PGLVYD +E DY+ FLC GYN
Sbjct: 448 ASPMNARFNPQAE--------FAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQ 499
Query: 657 TIKRFFGTQYECS--KSANLEDFNYPSISV---PMISGSVTLSRKLKNVG-SPSNYAASV 710
++R G C+ + + D NYPS + P + + +R L +V S Y A +
Sbjct: 500 AVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMI 559
Query: 711 REPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWTDGKHYVRSPIV 770
P G+++SV P +L+F +G+ KSF +T++ G + L W+DG HYVRSPI
Sbjct: 560 SAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSIKGFVVS---ASLVWSDGVHYVRSPIT 616
Query: 771 V 771
+
Sbjct: 617 I 617
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 380 bits (976), Expect = e-105, Method: Compositional matrix adjust.
Identities = 252/671 (37%), Positives = 364/671 (54%), Gaps = 48/671 (7%)
Query: 118 TTRSWDFMLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWK 177
TT + DF+ L SS W G+D+I+A LD+G+WPES SF D+G +P RWK
Sbjct: 1 TTHTSDFLKLN-----PSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWK 55
Query: 178 GTCQNSTK-EGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAG 236
G C+ T+ CNRKLIGA YFN+ A NI++N +ARD +GHGTH S
Sbjct: 56 GICKPGTQFNASMCNRKLIGANYFNKGILANDPTVNITMN---SARDTDGHGTHCASITA 112
Query: 237 GNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDV 296
GN GV+ FG GTA+G +P+AR+A YK + + F +D++ D A+ DGVD+
Sbjct: 113 GNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNE----GTFTSDLIAAMDQAVADGVDM 168
Query: 297 ISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTL 356
IS+S G + D +I +F A+ G++V SA N GP +G++ N SPWI+ V +
Sbjct: 169 ISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHT 228
Query: 357 DREFQNFVELRNGQRFKGTSL--SKSLPNDTFYPLITGLQXXXXXXXXXXXSLCKNGAL- 413
DR F + L NG + +G SL +++ D+ P+I S C + L
Sbjct: 229 DRTFAGTLTLGNGLKIRGWSLFPARAFVRDS--PVI----------YNKTLSDCSSEELL 276
Query: 414 -DHEKVKGKILVCL-RGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQI 471
E + I++C GD + D+ R A I ++ P+ P +
Sbjct: 277 SQVENPENTIVICDDNGDFS--DQMRIITRARLKAAIFISEDPGVFRSATFPN--PGVVV 332
Query: 472 TYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAP 531
K+G +V++Y+K+S P IT TYL+ KP+P +A+ S+ GP++ I KPDI AP
Sbjct: 333 NKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAP 392
Query: 532 GVNXXXXXXXXXXXXELPYDTR-RIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIR 590
GV + + Y + SGTSM+ PH AG+ +LK AHP+WSPSAIR
Sbjct: 393 GVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIR 452
Query: 591 SAIMTTARTRDNTANPMRDG-SFKKATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLC 649
SA+MTTA DNT P++D + K ATP G+GH+ PNRA+DPGLVYD + DY++ LC
Sbjct: 453 SAMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLC 512
Query: 650 SIGYNQTTIKRFFGTQYECSKSANLEDFNYPS-ISVPMISGSVTL-----SRKLKNVGS- 702
S+ + + K + + S D NYPS I++ I G+ TL R + NVG
Sbjct: 513 SLNFTEEQFKTIARSSASHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKG 572
Query: 703 PSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYR-FGELTWTD- 760
+ Y A ++ P ++SV P+IL FK E++S+ +T+ ++ G R G +TW +
Sbjct: 573 AATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTI--RYIGDEGQSRNVGSITWVEQ 630
Query: 761 -GKHYVRSPIV 770
G H VRSPIV
Sbjct: 631 NGNHSVRSPIV 641
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 122/463 (26%), Positives = 192/463 (41%), Gaps = 94/463 (20%)
Query: 166 DEGYGPVPSRWKGT----CQNSTKEGVRCNRKLIGARY---FNRAYAAYVKQHNISVNFN 218
D G+ W+ T + +KE + +K G Y N A Y H+ S +
Sbjct: 34 DAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYY---HDYSKD-G 89
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
TA D E HGTH GN P +G P+A++ +V ++ +G
Sbjct: 90 KTAVDQE-HGTHVSGILSGN-APSETKEPY---RLEGAMPEAQLLLMRV---EIVNGL-- 139
Query: 279 DADILKGFDMAIHDGVD----VISVSLGGDPADYFN--DGTAIGAFHAVKHGIVVVCSAA 332
AD + + AI D V+ VI++S G Y N D T +A G+ +V SA
Sbjct: 140 -ADYARNYAQAIRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAG 198
Query: 333 NSG-------------PELGTVTN--VSPWIITVGASTLDREFQNFVELR----NGQRFK 373
N P+ G V + +TV + + D++ ++ +
Sbjct: 199 NDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETATVKTDDHQAKEMP 258
Query: 374 GTSLSKSLPNDTF-YPLIT-GLQXXXXXXXXXXXSLCKNGALDHEKVKGKILVCLRGDTA 431
S ++ PN + Y G++ D + VKGKI + RGD
Sbjct: 259 VLSTNRFEPNKAYDYAYANRGMKED-----------------DFKDVKGKIALIERGDID 301
Query: 432 RVDKGRQAAVAGAVGMILCNDKSSGNEITADPHF--LPASQITYKDGVKVLDYIKSSDNP 489
DK A AGAVG+++ +++ G I P+ +PA+ I+ KDG+ + D +S
Sbjct: 302 FKDKIANAKKAGAVGVLIYDNQDKGFPIEL-PNVDQMPAAFISRKDGLLLKD---NSKKT 357
Query: 490 MGYITSPSTYLNAKPSPFMASFSSAGPNKITPE-ILKPDITAPGVNXXXXXXXXXXXXEL 548
+ + +P A + ++ FSS G +T + +KPDI APG +
Sbjct: 358 ITFNATPKVLPTASDTK-LSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK----- 408
Query: 549 PYDTRRIPYNIMSGTSMSCPHVAGVVGLLK----TAHPDWSPS 587
Y +SGTSMS P VAG++GLL+ T +PD +PS
Sbjct: 409 --------YAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPS 443
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 123/464 (26%), Positives = 185/464 (39%), Gaps = 96/464 (20%)
Query: 166 DEGYGPVPSRWKGT----CQNSTKEGVRCNRKLIGARY---FNRAYAAYVKQHNISVNFN 218
D G+ W+ T + +KE + +K G Y N A Y H+ S +
Sbjct: 25 DAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYY---HDYSKD-G 80
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
TA D E HGTH GN P +G P+A++ +V ++ +G
Sbjct: 81 KTAVDQE-HGTHVSGILSGN-APSETKEPY---RLEGAXPEAQLLLXRV---EIVNGL-- 130
Query: 279 DADILKGFDMAIHD----GVDVISVSLGGDPADYFN--DGTAIGAFHAVKHGIVVVCSAA 332
AD + + AI D G VI+ S G Y N D T +A G+ +V SA
Sbjct: 131 -ADYARNYAQAIRDAINLGAKVINXSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAG 189
Query: 333 NSG-------------PELGTVTN--VSPWIITVGASTLDREFQNFVELRNGQRFKGTSL 377
N P+ G V + +TV + + D++ V ++ +
Sbjct: 190 NDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQ------ 243
Query: 378 SKSLPNDTFYPLITGLQXXXXXXXXXXXSLCKNGALDHEKVKGKILVCLRGDTARVDKGR 437
D P+++ + + D + VKGKI + RGD DK
Sbjct: 244 -----QDKEXPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIA 298
Query: 438 QAAVAGAVGMILCNDKSSGNEITADPHF--LPASQITYKDGVKVLDYIKSSDNPMGYITS 495
+A AGAVG+++ +++ G I P+ PA+ I+ KDG+ + DNP IT
Sbjct: 299 KAKKAGAVGVLIYDNQDKGFPIEL-PNVDQXPAAFISRKDGLLL------KDNPQKTIT- 350
Query: 496 PSTYLNAKPSPF-------MASFSSAGPNKITPE-ILKPDITAPGVNXXXXXXXXXXXXE 547
NA P ++ FSS G +T + +KPDI APG +
Sbjct: 351 ----FNATPKVLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNK---- 399
Query: 548 LPYDTRRIPYNIMSGTSMSCPHVAGVVGLLK----TAHPDWSPS 587
Y +SGTS S P VAG+ GLL+ T +PD +PS
Sbjct: 400 ---------YAKLSGTSXSAPLVAGIXGLLQKQYETQYPDXTPS 434
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 69/145 (47%), Gaps = 16/145 (11%)
Query: 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSD 274
VN T D GHGTH S A G NG KG +P A++ KV Q
Sbjct: 168 VNGKTTPYDDNGHGTHVASIAAG-------TGAASNGKYKGMAPGAKLVGIKVLNGQ--- 217
Query: 275 GQCFDADILKGFDMAIHD----GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCS 330
G +DI+ G D A+ + G+ VI++SLG + D + +A G+VVV +
Sbjct: 218 GSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVA 277
Query: 331 AANSGPELGTVTN--VSPWIITVGA 353
A NSGP TV + + +ITVGA
Sbjct: 278 AGNSGPNKYTVGSPAAASKVITVGA 302
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 508 MASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSC 567
+ FSS GP LKP++ APG N P + Y GT+M+
Sbjct: 309 ITDFSSRGPT--ADNRLKPEVVAPG-NWIIAARASGTSMGQPINDY---YTAAPGTAMAT 362
Query: 568 PHVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597
PHVAG+ LL AHP W+P +++A++ TA
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALIETA 392
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 57/131 (43%), Gaps = 27/131 (20%)
Query: 479 VLDYIKSSDNPMGYITSPSTYLNAKP------SPFMASFSSAGPNKITPEILKPDITAPG 532
VL S ++ G I+ P+ Y NA + ASFS G DI APG
Sbjct: 145 VLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGL--------DIVAPG 196
Query: 533 VNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSA 592
VN P T Y ++GTSM+ PHVAGV L+K +P WS IR+
Sbjct: 197 VNVQS---------TYPGST----YASLNGTSMATPHVAGVAALVKQKNPSWSNVQIRNH 243
Query: 593 IMTTARTRDNT 603
+ TA NT
Sbjct: 244 LKNTATGLGNT 254
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 21/172 (12%)
Query: 222 RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDAD 281
+D GHGTH T L + V G+ +P A + A KV + G +
Sbjct: 57 QDGNGHGTHVAGTIAA-LNNSIGVLGV--------APSAELYAVKVL---GASGSGSVSS 104
Query: 282 ILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTV 341
I +G + A ++G+ V ++SL G P+ A+ + A G++VV ++ NSG G++
Sbjct: 105 IAQGLEWAGNNGMHVANLSL-GSPSPSATLEQAVNS--ATSRGVLVVAASGNSGA--GSI 159
Query: 342 TNVSPW--IITVGASTLDREFQNFVELRNGQRF--KGTSLSKSLPNDTFYPL 389
+ + + + VGA+ + +F + G G ++ + P T+ L
Sbjct: 160 SYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASL 211
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 21/95 (22%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y SGTSM+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICST---------LPGNK----YGAKSGTSMASP 216
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNT 603
HVAG L+ + HP+W+ + +RS++ T N+
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGNS 251
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 21/85 (24%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH GT +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLG---ADGSGQ 94
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 95 YSWIINGIEWAIANNMDVINMSLGG 119
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 55/122 (45%), Gaps = 35/122 (28%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGNK----YGAKSGTSMASP 225
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPN 628
HVAG L+ + HP+W+ + +RS++ +NT + D F YG G I
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGD-------SFYYGKGLINVQ 271
Query: 629 RA 630
A
Sbjct: 272 AA 273
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH T L + V G+ +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVAGTVAA-LNNSIGVLGV--------APCASLYAVKVLG---ADGSGQ 103
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 56/122 (45%), Gaps = 35/122 (28%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXST---------LPGNK----YGAYSGTSMASP 225
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPN 628
HVAG L+ + HP+W+ + +RS++ +NT + D F YG G I
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGD-------SFYYGKGLINVQ 271
Query: 629 RA 630
A
Sbjct: 272 AA 273
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH T L + V G+ +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVAGTVAA-LDNSIGVLGV--------APSASLYAVKVLG---ADGSGQ 103
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 46/88 (52%), Gaps = 21/88 (23%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXST---------LPGNK----YGAYSGTSMASP 225
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTT 596
HVAG L+ + HP+W+ + +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENT 253
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH T L + V G+ +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVAGTVAA-LDNSIGVLGV--------APSASLYAVKVLG---ADGSGQ 103
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 55/122 (45%), Gaps = 35/122 (28%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICS---------TLPGNK----YGAKSGTSMASP 225
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPN 628
HVAG L+ + HP+W+ + +RS++ +NT + D F YG G I
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGD-------SFYYGKGLINVQ 271
Query: 629 RA 630
A
Sbjct: 272 AA 273
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH T L + V G+ +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVAGTVAA-LNNSIGVLGV--------APCASLYAVKVLG---ADGSGQ 103
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 55/122 (45%), Gaps = 35/122 (28%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y SGTSM+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICST---------LPGNK----YGAKSGTSMASP 216
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPN 628
HVAG L+ + HP+W+ + +RS++ +NT + D F YG G I
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGD-------SFYYGKGLINVE 262
Query: 629 RA 630
A
Sbjct: 263 AA 264
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 21/85 (24%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH GT +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLG---ADGSGQ 94
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 95 YSWIINGIEWAIANNMDVINMSLGG 119
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 35/118 (29%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
A FSS GP + D+ APGV+ LP Y +SGTSM+ P
Sbjct: 178 APFSSVGP--------ELDVMAPGVSICST---------LPGGK----YGALSGTSMASP 216
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIR 626
HVAG L+ + HP+W+ + +RS++ +NTA + D F YG G I
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSL-------ENTATKLGDS-------FYYGKGLIN 260
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 21/84 (25%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH GT +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLG---ADGSGQ 94
Query: 279 DADILKGFDMAIHDGVDVISVSLG 302
+ I+ G + AI + +DVI++SLG
Sbjct: 95 ASWIINGIEWAIANNMDVINMSLG 118
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 55/122 (45%), Gaps = 35/122 (28%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y SGTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICST---------LPGNK----YGAKSGTSMASP 225
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPN 628
HVAG L+ + HP+W+ + +RS++ +NT + D F YG G I
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGD-------SFYYGKGLINVQ 271
Query: 629 RA 630
A
Sbjct: 272 AA 273
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH T L + V G+ +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVAGTVAA-LDNSIGVLGV--------APSASLYAVKVLG---ADGSGQ 103
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLGG 128
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 21/88 (23%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQS---------TLPGNK----YGAYNGTSMASP 225
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTT 596
HVAG L+ + HP+W+ + +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNT 253
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH T L + V G+ +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVAGTVAA-LNNSIGVLGV--------APSASLYAVKVLG---ADGSGQ 103
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLGG 128
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 21/88 (23%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQS---------TLPGNK----YGAYNGTSMASP 225
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTT 596
HVAG L+ + HP+W+ + +RS++ T
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNT 253
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 222 RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDAD 281
+D HGTH T L + V G+ +P + + A KV S +
Sbjct: 59 QDDNSHGTHVAGTVAA-LNNSIGVLGV--------APSSALYAVKVLGDAGSGQYSW--- 106
Query: 282 ILKGFDMAIHDGVDVISVSLGG 303
I+ G + AI + +DVI++SLGG
Sbjct: 107 IINGIEWAIANNMDVINMSLGG 128
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 35/122 (28%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGNK----YGAYNGTSMASP 225
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPN 628
HVAG L+ + HP+W+ + +RS++ +NT + D F YG G I
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGD-------SFYYGKGLINVQ 271
Query: 629 RA 630
A
Sbjct: 272 AA 273
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH T L + V G+ +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVAGTVAA-LNNSIGVLGV--------APSASLYAVKVLG---ADGSGQ 103
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 35/122 (28%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y SGT+M+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIVST---------LPGNK----YGAKSGTAMASP 216
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPN 628
HVAG L+ + HP+W+ + +RS++ +NT + D F YG G I
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGDS-------FYYGKGLINVQ 262
Query: 629 RA 630
A
Sbjct: 263 AA 264
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 21/85 (24%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH GT +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLG---ADGSGQ 94
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 95 YSWIINGIEWAIANNMDVINMSLGG 119
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 35/118 (29%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGNK----YGAYNGTSMASP 225
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIR 626
HVAG L+ + HP+W+ + +RS++ +NT + D F YG G I
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGD-------SFYYGKGLIN 269
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH T L + V G+ +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVAGTVAA-LNNSIGVLGV--------APSASLYAVKVLG---ADGSGQ 103
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 35/118 (29%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y SGT+M+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIVST---------LPGNK----YGAKSGTAMASP 216
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIR 626
HVAG L+ + HP+W+ + +RS++ +NT + D F YG G I
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGDS-------FYYGKGLIN 260
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 21/85 (24%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH GT +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLG---ADGSGQ 94
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 95 YSWIINGIEWAIANNMDVINMSLGG 119
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 35/122 (28%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y SGT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGNK----YGAKSGTXMASP 225
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPN 628
HVAG L+ + HP+W+ + +RS++ +NT + D F YG G I
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGD-------SFYYGKGLINVQ 271
Query: 629 RA 630
A
Sbjct: 272 AA 273
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH T L + V G+ +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVAGTVAA-LNNSIGVLGV--------APSASLYAVKVLG---ADGSGQ 103
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 35/122 (28%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y SGT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGNK----YGAYSGTXMASP 225
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPN 628
HVAG L+ + HP+W+ + +RS++ +NT + D F YG G I
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGD-------SFYYGKGLINVQ 271
Query: 629 RA 630
A
Sbjct: 272 AA 273
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH T L + V G+ +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVAGTVAA-LNNSIGVLGV--------APSASLYAVKVLG---ADGSGQ 103
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 35/118 (29%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y +GTSM+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQS---------TLPGNK----YGAYNGTSMASP 225
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIR 626
HVAG L+ + HP+W+ + +RS++ +NT + D F YG G I
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGD-------SFYYGKGLIN 269
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH T L + V G+ +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVAGTVAA-LNNSIGVLGV--------APSASLYAVKVLG---ADGSGQ 103
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLGG 128
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 35/118 (29%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
A FSS GP + D+ APGV+ LP Y +SGT+M+ P
Sbjct: 178 APFSSVGP--------ELDVMAPGVSICST---------LPGGK----YGALSGTAMASP 216
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIR 626
HVAG L+ + HP+W+ + +RS++ +NTA + D F YG G I
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSL-------ENTATKLGDS-------FYYGKGLIN 260
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 21/84 (25%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH GT +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLG---ADGSGQ 94
Query: 279 DADILKGFDMAIHDGVDVISVSLG 302
+ I+ G + AI + +DVI++SLG
Sbjct: 95 ASWIINGIEWAIANNMDVINMSLG 118
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 57/131 (43%), Gaps = 27/131 (20%)
Query: 479 VLDYIKSSDNPMGYITSPSTYLNAKP------SPFMASFSSAGPNKITPEILKPDITAPG 532
VL S ++ G I+ P+ Y NA + ASFS G DI APG
Sbjct: 145 VLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGL--------DIVAPG 196
Query: 533 VNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSA 592
VN P T Y ++GTSM+ PHVAG L+K +P WS IR+
Sbjct: 197 VNVQS---------TYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNH 243
Query: 593 IMTTARTRDNT 603
+ TA + +T
Sbjct: 244 LKNTATSLGST 254
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 35/122 (28%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y SGT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGNK----YGAYSGTXMASP 225
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPN 628
HVAG L+ + HP+W+ + +RS++ +NT + D F YG G I
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGD-------SFYYGKGLINVQ 271
Query: 629 RA 630
A
Sbjct: 272 AA 273
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH T L + V G+ +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVAGTVAA-LNNSIGVLGV--------APCASLYAVKVLG---ADGSGQ 103
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 35/122 (28%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y SGT M+ P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICST---------LPGNK----YGAKSGTXMASP 216
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPN 628
HVAG L+ + HP+W+ + +RS++ +NT + D F YG G I
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGD-------SFYYGKGLINVE 262
Query: 629 RA 630
A
Sbjct: 263 AA 264
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 21/85 (24%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH GT +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLG---ADGSGQ 94
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 95 YSWIINGIEWAIANNMDVINMSLGG 119
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 57/131 (43%), Gaps = 27/131 (20%)
Query: 479 VLDYIKSSDNPMGYITSPSTYLNAKP------SPFMASFSSAGPNKITPEILKPDITAPG 532
VL S ++ G I+ P+ Y NA + ASFS G DI APG
Sbjct: 145 VLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGL--------DIVAPG 196
Query: 533 VNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSA 592
VN P T Y ++GTSM+ PHVAG L+K +P WS IR+
Sbjct: 197 VNVQS---------TYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNH 243
Query: 593 IMTTARTRDNT 603
+ TA + +T
Sbjct: 244 LKNTATSLGST 254
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 21/172 (12%)
Query: 222 RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDAD 281
+D GHGTH T L + V G+ +P A + A KV + G +
Sbjct: 57 QDGNGHGTHVAGTIAA-LNNSIGVLGV--------APNAELYAVKVL---GASGSGSVSS 104
Query: 282 ILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTV 341
I +G + A ++G+ V ++SL G P+ A+ + A G++VV ++ NSG G++
Sbjct: 105 IAQGLEWAGNNGMHVANLSL-GSPSPSATLEQAVNS--ATSRGVLVVAASGNSGA--GSI 159
Query: 342 TNVSPW--IITVGASTLDREFQNFVELRNGQRF--KGTSLSKSLPNDTFYPL 389
+ + + + VGA+ + +F + G G ++ + P T+ L
Sbjct: 160 SYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASL 211
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 57/131 (43%), Gaps = 27/131 (20%)
Query: 479 VLDYIKSSDNPMGYITSPSTYLNAKP------SPFMASFSSAGPNKITPEILKPDITAPG 532
VL S ++ G I+ P+ Y NA + ASFS G DI APG
Sbjct: 145 VLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGL--------DIVAPG 196
Query: 533 VNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSA 592
VN P T Y ++GTSM+ PHVAG L+K +P WS IR+
Sbjct: 197 VNVQS---------TYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNH 243
Query: 593 IMTTARTRDNT 603
+ TA + +T
Sbjct: 244 LKNTATSLGST 254
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 21/172 (12%)
Query: 222 RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDAD 281
+D GHGTH T L + V G+ +P A + A KV + G ++
Sbjct: 57 QDGNGHGTHVAGTIAA-LNNSIGVLGV--------APNAELYAVKVL---GASGGGSNSS 104
Query: 282 ILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTV 341
I +G + A ++G+ V ++SL G P+ A+ + A G++VV ++ NSG G++
Sbjct: 105 IAQGLEWAGNNGMHVANLSL-GSPSPSATLEQAVNS--ATSRGVLVVAASGNSGA--GSI 159
Query: 342 TNVSPW--IITVGASTLDREFQNFVELRNGQRF--KGTSLSKSLPNDTFYPL 389
+ + + + VGA+ + +F + G G ++ + P T+ L
Sbjct: 160 SYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASL 211
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 57/131 (43%), Gaps = 27/131 (20%)
Query: 479 VLDYIKSSDNPMGYITSPSTYLNAKP------SPFMASFSSAGPNKITPEILKPDITAPG 532
VL S ++ G I+ P+ Y NA + ASFS G DI APG
Sbjct: 145 VLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGL--------DIVAPG 196
Query: 533 VNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSA 592
VN P T Y ++GTSM+ PHVAG L+K +P WS IR+
Sbjct: 197 VNVQS---------TYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNH 243
Query: 593 IMTTARTRDNT 603
+ TA + +T
Sbjct: 244 LKNTATSLGST 254
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 21/172 (12%)
Query: 222 RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDAD 281
+D GHGTH T L + V G+ +P A + A KV + G +
Sbjct: 57 QDGNGHGTHVAGTIAA-LNNSIGVLGV--------APSAELYAVKVL---GASGSGSVSS 104
Query: 282 ILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTV 341
I +G + A ++G+ V ++SL G P+ A+ + A G++VV ++ NSG G++
Sbjct: 105 IAQGLEWAGNNGMHVANLSL-GSPSPSATLEQAVNS--ATSRGVLVVAASGNSGA--GSI 159
Query: 342 TNVSPW--IITVGASTLDREFQNFVELRNGQRF--KGTSLSKSLPNDTFYPL 389
+ + + + VGA+ + +F + G G ++ + P T+ L
Sbjct: 160 SYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASL 211
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 35/118 (29%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y SGT M+ P
Sbjct: 175 ASFSSVGP--------ELDVMAPGVSIWST---------LPGNK----YGAKSGTXMASP 213
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIR 626
HVAG L+ + HP+W+ + +RS++ +NT + D F YG G I
Sbjct: 214 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGD-------SFYYGKGLIN 257
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 21/85 (24%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH GT +P A + A KV +DG
Sbjct: 53 NPFQDNNSHGTHVA------------------GTVLAVAPSASLYAVKVLG---ADGSGQ 91
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 92 YSWIINGIEWAIANNMDVINMSLGG 116
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 35/122 (28%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y +GT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGNK----YGAYNGTXMASP 225
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPN 628
HVAG L+ + HP+W+ + +RS++ +NT + D F YG G I
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGD-------SFYYGKGLINVQ 271
Query: 629 RA 630
A
Sbjct: 272 AA 273
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH T L + V G+ +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVAGTVAA-LNNSIGVLGV--------APSASLYAVKVLG---ADGSGQ 103
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 35/122 (28%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y +GT M+ P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGNK----YGAYNGTXMASP 225
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPN 628
HVAG L+ + HP+W+ + +RS++ +NT + D F YG G I
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGD-------SFYYGKGLINVQ 271
Query: 629 RA 630
A
Sbjct: 272 AA 273
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 12/85 (14%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH T L + V G+ +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVAGTVAA-LNNSIGVLGV--------APSASLYAVKVLG---ADGSGQ 103
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + +DVI++SLGG
Sbjct: 104 YSWIINGIEWAIANNMDVINMSLGG 128
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 56/131 (42%), Gaps = 27/131 (20%)
Query: 479 VLDYIKSSDNPMGYITSPSTYLNAKP------SPFMASFSSAGPNKITPEILKPDITAPG 532
VL S ++ G I+ P+ Y NA + ASFS G DI APG
Sbjct: 145 VLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGL--------DIVAPG 196
Query: 533 VNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSA 592
VN P T Y ++GT M+ PHVAG L+K +P WS IR+
Sbjct: 197 VNVQS---------TYPGST----YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNH 243
Query: 593 IMTTARTRDNT 603
+ TA + +T
Sbjct: 244 LKNTATSLGST 254
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 18/201 (8%)
Query: 201 NRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGG--------NLVPGVNVFGMGNGT 252
N A+ + +S + A D GHGTH + T + PGV ++ +
Sbjct: 59 NIAWCVSTLRGKVSTKLRDCA-DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLD 117
Query: 253 AKGGSPKARVA---AYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYF 309
A+G + +A A + P + D I D D +VIS+SLGG D +
Sbjct: 118 ARGSGSYSDIAIGIAQAILGPDGVADKDGDGIIAGDPD---DDAAEVISMSLGGPADDSY 174
Query: 310 NDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNG 369
I A++A GIV+V ++ N G + P +I VGA + +F +
Sbjct: 175 LYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPE 231
Query: 370 QRFKGTSLSKSLPNDTFYPLI 390
G + + P+D++ L+
Sbjct: 232 VSAPGVDILSTYPDDSYETLM 252
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 525 KPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH 581
+P+++APGV+ P D+ Y + GT+M+ PHV+GVV L++ A+
Sbjct: 229 QPEVSAPGVDILST---------YPDDS----YETLMGTAMATPHVSGVVALIQAAY 272
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSSAG + D+ APGV+ LP T Y +GTSM+ P
Sbjct: 187 ASFSSAGS--------ELDVMAPGVSIQS---------TLPGGT----YGAYNGTSMATP 225
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597
HVAG L+ + HP W+ + +R + +TA
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTA 254
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 74/179 (41%), Gaps = 31/179 (17%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D HGTH T L + V G+ +P A + A KV S G
Sbjct: 56 NPYQDGSSHGTHVAGTIAA-LNNSIGVLGV--------APSASLYAVKVL---DSTGSGQ 103
Query: 279 DADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAF--HAVKHGIVVVCSAANSGP 336
+ I+ G + AI + +DVI++SLGG TA+ AV GIVV +A N G
Sbjct: 104 YSWIINGIEWAISNNMDVINMSLGGPTGS-----TALKTVVDKAVSSGIVVAAAAGNEGS 158
Query: 337 ELGTVTNVS-----PWIITVGASTLDREFQNFVELRNGQRFK----GTSLSKSLPNDTF 386
G+ + V P I VGA + +F G G S+ +LP T+
Sbjct: 159 S-GSTSTVGYPAKYPSTIAVGAVNSANQRASFSSA--GSELDVMAPGVSIQSTLPGGTY 214
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 56/131 (42%), Gaps = 27/131 (20%)
Query: 479 VLDYIKSSDNPMGYITSPSTYLNAKP------SPFMASFSSAGPNKITPEILKPDITAPG 532
VL S ++ G I+ P+ Y NA + ASFS G DI APG
Sbjct: 145 VLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGL--------DIVAPG 196
Query: 533 VNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSA 592
VN P T Y ++GT M+ PHVAG L+K +P WS IR+
Sbjct: 197 VNVQS---------TYPGST----YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNH 243
Query: 593 IMTTARTRDNT 603
+ TA + +T
Sbjct: 244 LKNTATSLGST 254
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 21/172 (12%)
Query: 222 RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDAD 281
+D GHGTH T L + V G+ +P A + A KV + G +
Sbjct: 57 QDGNGHGTHVAGTIAA-LNNSIGVLGV--------APNAELYAVKVL---GASGSGSVSS 104
Query: 282 ILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTV 341
I +G + A ++G+ V ++SL G P+ A+ + A G++VV ++ NSG G++
Sbjct: 105 IAQGLEWAGNNGMHVANLSL-GSPSPSATLEQAVNS--ATSRGVLVVAASGNSGA--GSI 159
Query: 342 TNVSPW--IITVGASTLDREFQNFVELRNGQRF--KGTSLSKSLPNDTFYPL 389
+ + + + VGA+ + +F + G G ++ + P T+ L
Sbjct: 160 SYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASL 211
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 56/131 (42%), Gaps = 27/131 (20%)
Query: 479 VLDYIKSSDNPMGYITSPSTYLNAKP------SPFMASFSSAGPNKITPEILKPDITAPG 532
VL S ++ G I+ P+ Y NA + ASFS G DI APG
Sbjct: 145 VLVVAASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGL--------DIVAPG 196
Query: 533 VNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSA 592
VN P T Y ++GT M+ PHVAG L+K +P WS IR+
Sbjct: 197 VNVQS---------TYPGST----YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNH 243
Query: 593 IMTTARTRDNT 603
+ TA + +T
Sbjct: 244 LKNTATSLGST 254
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 78/172 (45%), Gaps = 21/172 (12%)
Query: 222 RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDAD 281
+D GHGTH T L + V G+ +P A + A KV + G +
Sbjct: 57 QDGNGHGTHVAGTIAA-LDNSIGVLGV--------APSAELYAVKVLG---ASGSGAISS 104
Query: 282 ILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTV 341
I +G + A ++G+ V ++SL G P+ A+ + A G++VV ++ NSG G++
Sbjct: 105 IAQGLEWAGNNGMHVANLSL-GSPSPSATLEQAVNS--ATSRGVLVVAASGNSGA--GSI 159
Query: 342 TNVSPW--IITVGASTLDREFQNFVELRNGQRF--KGTSLSKSLPNDTFYPL 389
+ + + + VGA+ + +F + G G ++ + P T+ L
Sbjct: 160 SYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASL 211
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 35/122 (28%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS GP + D+ APGV+ LP + Y +GTS + P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQST---------LPGNK----YGAYNGTSXASP 225
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPN 628
HVAG L+ + HP+W+ + +RS++ +NT + D F YG G I
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSL-------ENTTTKLGD-------SFYYGKGLINVQ 271
Query: 629 RA 630
A
Sbjct: 272 AA 273
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D+ HGTH T L + V G+ +P A + A KV +DG
Sbjct: 56 NPFQDNNSHGTHVAGTVAA-LNNSIGVLGV--------APSASLYAVKVLG---ADGSGQ 103
Query: 279 DADILKGFDMAIHDGVDVISVSLGG 303
+ I+ G + AI + DVI+ SLGG
Sbjct: 104 YSWIINGIEWAIANNXDVINXSLGG 128
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 13/77 (16%)
Query: 527 DITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSP 586
DI APGVN P T Y ++GTSM+ PHVAG L+K +P WS
Sbjct: 191 DIVAPGVNVQS---------TYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 587 SAIRSAIMTTARTRDNT 603
IR+ + TA + +T
Sbjct: 238 VQIRNHLKNTATSLGST 254
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 222 RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDAD 281
+D GHGTH T L + V G+ +P A + A KV +DG+ +
Sbjct: 57 QDGNGHGTHVAGTIAA-LNNSIGVLGV--------APSAELYAVKVLG---ADGRGAISS 104
Query: 282 ILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSG 335
I +G + A ++G+ V ++SL G P+ A+ + A G++VV ++ NSG
Sbjct: 105 IAQGLEWAGNNGMHVANLSL-GSPSPSATLEQAVNS--ATSRGVLVVAASGNSG 155
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 18/201 (8%)
Query: 201 NRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGG--------NLVPGVNVFGMGNGT 252
N A+ + +S + A D GHGTH + T + PGV ++ +
Sbjct: 128 NIAWCVSTLRGKVSTKLRDCA-DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLD 186
Query: 253 AKGGSPKARVA---AYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYF 309
A+G + +A + P + D I D D +VIS+SLGG D +
Sbjct: 187 ARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPD---DDAAEVISMSLGGPADDSY 243
Query: 310 NDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNG 369
I A++A GIV+V ++ N G + P +I VGA + +F +
Sbjct: 244 LYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPE 300
Query: 370 QRFKGTSLSKSLPNDTFYPLI 390
G + + P+D++ L+
Sbjct: 301 VSAPGVDILSTYPDDSYETLM 321
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 525 KPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH 581
+P+++APGV+ P D+ Y + GT+M+ PHV+GVV L++ A+
Sbjct: 298 QPEVSAPGVDILST---------YPDDS----YETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 18/201 (8%)
Query: 201 NRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGG--------NLVPGVNVFGMGNGT 252
N A+ + +S + A D GHGTH + T + PGV ++ +
Sbjct: 128 NIAWCVSTLRGKVSTKLRDCA-DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLD 186
Query: 253 AKGGSPKARVA---AYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYF 309
A+G + +A + P + D I D D +VIS+SLGG D +
Sbjct: 187 ARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPD---DDAAEVISMSLGGPADDSY 243
Query: 310 NDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNG 369
I A++A GIV+V ++ N G + P +I VGA + +F +
Sbjct: 244 LYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPE 300
Query: 370 QRFKGTSLSKSLPNDTFYPLI 390
G + + P+D++ L+
Sbjct: 301 VSAPGVDILSTYPDDSYETLM 321
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 525 KPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH 581
+P+++APGV+ P D+ Y + GT+M+ PHV+GVV L++ A+
Sbjct: 298 QPEVSAPGVDILST---------YPDDS----YETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 18/201 (8%)
Query: 201 NRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGG--------NLVPGVNVFGMGNGT 252
N A+ + +S + A D GHGTH + T + PGV ++ +
Sbjct: 128 NIAWCVSTLRGKVSTKLRDCA-DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLD 186
Query: 253 AKGGSPKARVA---AYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYF 309
A+G + +A + P + D I D D +VIS+SLGG D +
Sbjct: 187 ARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDA---DAAEVISMSLGGPADDSY 243
Query: 310 NDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNG 369
I A++A GIV+V ++ N G + P +I VGA + +F +
Sbjct: 244 LYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPE 300
Query: 370 QRFKGTSLSKSLPNDTFYPLI 390
G + + P+D++ L+
Sbjct: 301 VSAPGVDILSTYPDDSYETLM 321
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 525 KPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH 581
+P+++APGV+ P D+ Y + GT+M+ PHV+GVV L++ A+
Sbjct: 298 QPEVSAPGVDILST---------YPDDS----YETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 18/201 (8%)
Query: 201 NRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGG--------NLVPGVNVFGMGNGT 252
N A+ + +S + A D GHGTH + T + PGV ++ +
Sbjct: 48 NIAWCVSTLRGKVSTKLRDCA-DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLD 106
Query: 253 AKGGSPKARVA---AYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYF 309
A+G + +A + P + D I D D +VIS+SLGG D +
Sbjct: 107 ARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPD---DDAAEVISMSLGGPADDSY 163
Query: 310 NDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNG 369
I A++A GIV+V ++ N G + P +I VGA + +F +
Sbjct: 164 LYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPE 220
Query: 370 QRFKGTSLSKSLPNDTFYPLI 390
G + + P+D++ L+
Sbjct: 221 VSAPGVDILSTYPDDSYETLM 241
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 525 KPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH 581
+P+++APGV+ P D+ Y + GT M+ PHV+GVV L++ A+
Sbjct: 218 QPEVSAPGVDILST---------YPDDS----YETLMGTCMATPHVSGVVALIQAAY 261
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 18/201 (8%)
Query: 201 NRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGG--------NLVPGVNVFGMGNGT 252
N A+ + +S + A D GHGTH + T + PGV ++ +
Sbjct: 48 NIAWCVSTLRGKVSTKLRDCA-DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLD 106
Query: 253 AKGGSPKARVA---AYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYF 309
A+G + +A + P + D I D D +VIS+SLGG D +
Sbjct: 107 ARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPD---DDAAEVISMSLGGPADDSY 163
Query: 310 NDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNG 369
I A++A GIV+V ++ N G + P +I VGA + +F +
Sbjct: 164 LYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPE 220
Query: 370 QRFKGTSLSKSLPNDTFYPLI 390
G + + P+D++ L+
Sbjct: 221 VSAPGVDILSTYPDDSYETLM 241
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 525 KPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH 581
+P+++APGV+ P D+ Y + GT M+ PHV+GVV L++ A+
Sbjct: 218 QPEVSAPGVDILST---------YPDDS----YETLMGTXMATPHVSGVVALIQAAY 261
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 18/201 (8%)
Query: 201 NRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGG--------NLVPGVNVFGMGNGT 252
N A+ + +S + A D GHGTH + T + PGV ++ +
Sbjct: 48 NIAWCVSTLRGKVSTKLRDCA-DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLD 106
Query: 253 AKGGSPKARVA---AYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYF 309
A+G + +A + P + D I D D +VIS+SLGG D +
Sbjct: 107 ARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPD---DDAAEVISMSLGGPADDSY 163
Query: 310 NDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNG 369
I A++A GIV+V ++ N G + P +I VGA + +F +
Sbjct: 164 LYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPE 220
Query: 370 QRFKGTSLSKSLPNDTFYPLI 390
G + + P+D++ L+
Sbjct: 221 VSAPGVDILSTYPDDSYETLM 241
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 525 KPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH 581
+P+++APGV+ P D+ Y + GT+M+ PHV+GVV L++ A+
Sbjct: 218 QPEVSAPGVDILST---------YPDDS----YETLMGTAMATPHVSGVVALIQAAY 261
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 18/201 (8%)
Query: 201 NRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGG--------NLVPGVNVFGMGNGT 252
N A+ + +S + A D GHGTH + T + PGV ++ +
Sbjct: 125 NIAWCVSTLRGKVSTKLRDCA-DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLD 183
Query: 253 AKGGSPKARVA---AYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYF 309
A+G + +A + P + D I D D +VIS+SLGG D +
Sbjct: 184 ARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPD---DDAAEVISMSLGGPADDSY 240
Query: 310 NDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNG 369
I A++A GIV+V ++ N G + P +I VGA + +F +
Sbjct: 241 LYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPE 297
Query: 370 QRFKGTSLSKSLPNDTFYPLI 390
G + + P+D++ L+
Sbjct: 298 VSAPGVDILSTYPDDSYETLM 318
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 525 KPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH 581
+P+++APGV+ P D+ Y + GT+M+ PHV+GVV L++ A+
Sbjct: 295 QPEVSAPGVDILST---------YPDDS----YETLMGTAMATPHVSGVVALIQAAY 338
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 18/201 (8%)
Query: 201 NRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGG--------NLVPGVNVFGMGNGT 252
N A+ + +S + A D GHGTH + T + PGV ++ +
Sbjct: 50 NIAWCVSTLRGKVSTKLRDCA-DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLD 108
Query: 253 AKGGSPKARVA---AYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYF 309
A+G + +A + P + D I D D +VIS+SLGG D +
Sbjct: 109 ARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPD---DDAAEVISMSLGGPADDSY 165
Query: 310 NDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNG 369
I A++A GIV+V ++ N G + P +I VGA + +F +
Sbjct: 166 LYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPE 222
Query: 370 QRFKGTSLSKSLPNDTFYPLI 390
G + + P+D++ L+
Sbjct: 223 VSAPGVDILSTYPDDSYETLM 243
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 525 KPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH 581
+P+++APGV+ P D+ Y + GT+M+ PHV+GVV L++ A+
Sbjct: 220 QPEVSAPGVDILST---------YPDDS----YETLMGTAMATPHVSGVVALIQAAY 263
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 21/95 (22%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSSAG + D+ APGV+ LP T Y +GT M+ P
Sbjct: 187 ASFSSAGS--------ELDVMAPGVSIQS---------TLPGGT----YGAYNGTCMATP 225
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNT 603
HVAG L+ + HP W+ + +R + +TA N+
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS 260
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 74/179 (41%), Gaps = 31/179 (17%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D HGTH T L + V G+ SP A + A KV S G
Sbjct: 56 NPYQDGSSHGTHVAGTIAA-LNNSIGVLGV--------SPSASLYAVKVL---DSTGSGQ 103
Query: 279 DADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAF--HAVKHGIVVVCSAANSGP 336
+ I+ G + AI + +DVI++SLGG TA+ AV GIVV +A N G
Sbjct: 104 YSWIINGIEWAISNNMDVINMSLGGPTGS-----TALKTVVDKAVSSGIVVAAAAGNEGS 158
Query: 337 ELGTVTNVS-----PWIITVGASTLDREFQNFVELRNGQRFK----GTSLSKSLPNDTF 386
G+ + V P I VGA + +F G G S+ +LP T+
Sbjct: 159 S-GSTSTVGYPAKYPSTIAVGAVNSSNQRASFSSA--GSELDVMAPGVSIQSTLPGGTY 214
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 54/131 (41%), Gaps = 27/131 (20%)
Query: 479 VLDYIKSSDNPMGYITSPSTYLNAKP------SPFMASFSSAGPNKITPEILKPDITAPG 532
VL S + G I P+ Y NA + ASFS G DI APG
Sbjct: 145 VLVVAASGNEGAGSIDYPARYANAMAVGATDQNNNRASFSQYGAGL--------DIVAPG 196
Query: 533 VNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSA 592
VN P T Y ++GT M+ PHVAG L+K +P WS IR+
Sbjct: 197 VNVQST---------YPGST----YASLNGTXMATPHVAGAAALVKQKNPSWSNVQIRNH 243
Query: 593 IMTTARTRDNT 603
+ TA + +T
Sbjct: 244 LKNTATSLGST 254
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 15/114 (13%)
Query: 222 RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDAD 281
+D GHGTH T L + V G+ +P A + A KV + G +
Sbjct: 57 QDGNGHGTHVAGTIAA-LDNSIGVLGV--------APSAELYAVKVLG---ASGSGAISS 104
Query: 282 ILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSG 335
I +G + A ++G+ V ++SL G P+ A+ + A G++VV ++ N G
Sbjct: 105 IAQGLEWAGNNGMHVANLSL-GSPSPSATLEQAVNS--ATSRGVLVVAASGNEG 155
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 18/201 (8%)
Query: 201 NRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGG--------NLVPGVNVFGMGNGT 252
N A+ + +S + A D GHGTH + T + PGV ++ +
Sbjct: 59 NIAWCVSTLRGKVSTKLRDCA-DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLD 117
Query: 253 AKGGSPKARVA---AYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYF 309
A+G + +A + P + D I D D +VIS+SLGG D +
Sbjct: 118 ARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPD---DDAAEVISMSLGGPADDSY 174
Query: 310 NDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNG 369
I A++A GIV+V ++ N G + P +I VGA + +F +
Sbjct: 175 LYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPE 231
Query: 370 QRFKGTSLSKSLPNDTFYPLI 390
G + + P+D++ L+
Sbjct: 232 VSAPGVDILSTYPDDSYETLM 252
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 525 KPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH 581
+P+++APGV+ P D+ Y + GT+M+ PHV+GVV L++ A+
Sbjct: 229 QPEVSAPGVDILST---------YPDDS----YETLMGTAMATPHVSGVVALIQAAY 272
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 21/95 (22%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS G + D+ APGV+ LP T Y +GT M+ P
Sbjct: 187 ASFSSVGS--------ELDVMAPGVSIQS---------TLPGGT----YGAYNGTXMATP 225
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNT 603
HVAG L+ + HP W+ + +R + +TA N+
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS 260
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 75/179 (41%), Gaps = 31/179 (17%)
Query: 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCF 278
N +D HGTH T L + V G+ +P A + A KV S G
Sbjct: 56 NPYQDGSSHGTHVAGTIAA-LNNSIGVLGV--------APSASLYAVKVL---DSTGSGQ 103
Query: 279 DADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAF--HAVKHGIVVVCSAANSGP 336
+ I+ G + AI + +DVI++SLGG TA+ AV GIVV +A N G
Sbjct: 104 YSWIINGIEWAISNNMDVINMSLGGPTGS-----TALKTVVDKAVSSGIVVAAAAGNEGS 158
Query: 337 ELGTVTNVS-----PWIITVGASTLDREFQNFVELRNGQRFK----GTSLSKSLPNDTF 386
G+ + V P I VGA + +F + G G S+ +LP T+
Sbjct: 159 S-GSTSTVGYPAKYPSTIAVGAVNSSNQRASFSSV--GSELDVMAPGVSIQSTLPGGTY 214
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 82/201 (40%), Gaps = 18/201 (8%)
Query: 201 NRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGG--------NLVPGVNVFGMGNGT 252
N A+ + +S + A D GHGTH + T + PGV ++ +
Sbjct: 128 NIAWCVSTLRGKVSTKLRDCA-DQNGHGTHVIGTIAALNNDIGVVGVAPGVQIYSVRVLD 186
Query: 253 AKGGSPKARVA---AYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYF 309
A+G + +A + P + D I D A +VIS+SLGG D +
Sbjct: 187 ARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDA---AAEVISMSLGGPADDSY 243
Query: 310 NDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNG 369
I A++A GIV+V ++ N G + P +I VGA + +F +
Sbjct: 244 LYDMIIQAYNA---GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPE 300
Query: 370 QRFKGTSLSKSLPNDTFYPLI 390
G + + P+D++ L+
Sbjct: 301 VSAPGVDILSTYPDDSYETLM 321
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 525 KPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH 581
+P+++APGV+ P D+ Y + GT+M+ PHV+GVV L++ A+
Sbjct: 298 QPEVSAPGVDILST---------YPDDS----YETLMGTAMATPHVSGVVALIQAAY 341
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 558 NIMSGTSMSCPHVAGVVGL----LKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFK 613
+ +GTS + PHVAG V L LK + ++SP +I+ AI TA
Sbjct: 456 QLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTA------------TKLG 503
Query: 614 KATPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYN 654
PF+ G G + +A + + S+D+ L F +G N
Sbjct: 504 YVDPFAQGHGLLNVEKAFEHLTEHRQSKDNXLRFSVRVGNN 544
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 60/144 (41%), Gaps = 34/144 (23%)
Query: 227 HGTHTLSTAGGN--------LVPGVNVFGMGNGTAKGGSPK---ARVAAYKVCWPQVSDG 275
HGTH S A GN + P + G + GS + A V A DG
Sbjct: 272 HGTHVSSIASGNHSSRDVDGVAPNAKIVSXTIGDGRLGSXETGTALVRAXTKVXELCRDG 331
Query: 276 QCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAV--KHGIVVVCSAAN 333
+ +DVI+ S G + A++ N G + V K+G+V V SA N
Sbjct: 332 R----------------RIDVINXSYG-EHANWSNSGRIGELXNEVVNKYGVVWVASAGN 374
Query: 334 SGPEL---GTVTNVS-PWIITVGA 353
GP L GT ++S P +I VGA
Sbjct: 375 HGPALCTVGTPPDISQPSLIGVGA 398
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597
Y ++GTSM+ PHVAG L+ + HP+ S S +R+ + +TA
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597
Y ++GTSM+ PHVAG L+ + HP+ S S +R+ + +TA
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597
Y ++GTSM+ PHVAG L+ + HP+ S S +R+ + +TA
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597
Y ++GTSM+ PHVAG L+ + HP+ S S +R+ + +TA
Sbjct: 214 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 254
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597
Y ++GTSM+ PHVAG L+ + HP+ S S +R+ + +TA
Sbjct: 214 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 254
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597
Y ++GTSM+ PHVAG L+ + HP+ S S +R+ + +TA
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597
Y +GTSM+ PHV+GV L+ + HP+ S S +R+A+ TA
Sbjct: 362 YEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATA 402
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597
Y ++GT M+ PHVAG L+ + HP+ S S +R+ + +TA
Sbjct: 213 YATLNGTXMASPHVAGAAALILSKHPNLSASQVRNRLSSTA 253
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 78/176 (44%), Gaps = 27/176 (15%)
Query: 223 DHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAK-GGSPKARVAAYKVCWPQVSDGQCFDAD 281
D GHGTH T V + N T G +P + A KV S G +
Sbjct: 59 DGNGHGTHVAGT----------VAALDNTTGVLGVAPNVSLYAIKVLN---SSGSGSYSA 105
Query: 282 ILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTV 341
I+ G + A +G+DVI++SLGG P+ A+ +A GIVVV +A NSG
Sbjct: 106 IVSGIEWATQNGLDVINMSLGG-PSGSTALKQAVDKAYA--SGIVVVAAAGNSGNSGSQN 162
Query: 342 TNVSPW----IITVGASTLDREFQNFVELRNGQRFK----GTSLSKSLPNDTFYPL 389
T P +I VGA ++ +F + G + G S+ + P++T+ L
Sbjct: 163 TIGYPAKYDSVIAVGAVDSNKNRASFSSV--GSELEVMAPGVSVYSTYPSNTYTSL 216
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 21/89 (23%)
Query: 509 ASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMSCP 568
ASFSS G + ++ APGV+ P +T Y ++GTSM+ P
Sbjct: 186 ASFSSVGS--------ELEVMAPGVSVYS---------TYPSNT----YTSLNGTSMASP 224
Query: 569 HVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597
HVAG L+ + +P S S +R+ + +TA
Sbjct: 225 HVAGAAALILSKYPTLSASQVRNRLSSTA 253
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 24/133 (18%)
Query: 217 FNNTARDHEGHGTHTLSTA---GGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVS 273
NN+ D GHGTH TA GG+ G ++G+ +P A + AYKV +
Sbjct: 61 INNSCTDRNGHGTHVAGTALADGGSDQAG--IYGV--------APDADLWAYKVL---LD 107
Query: 274 DGQCFDADILKGF----DMAIHDGVD-VISVSLGGDPADYFNDGTAIGAFHAVKHGIVVV 328
G + DI D A G +IS+SLG + + +A G+++V
Sbjct: 108 SGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSL---ISSAVNYAYSKGVLIV 164
Query: 329 CSAANSGPELGTV 341
+A NSG GT+
Sbjct: 165 AAAGNSGYSQGTI 177
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRD 601
YN +SGTSM+ PHV+G+ + +P S + +RS + A++ D
Sbjct: 243 YNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 24/133 (18%)
Query: 217 FNNTARDHEGHGTHTLSTA---GGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVS 273
NN+ D GHGTH TA GG+ G ++G+ +P A + AYKV +
Sbjct: 61 INNSCTDRNGHGTHVAGTALADGGSDQAG--IYGV--------APDADLWAYKVL---LD 107
Query: 274 DGQCFDADILKGF----DMAIHDGVD-VISVSLGGDPADYFNDGTAIGAFHAVKHGIVVV 328
G + DI D A G +IS+SLG + + +A G+++V
Sbjct: 108 SGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSL---ISSAVNYAYSKGVLIV 164
Query: 329 CSAANSGPELGTV 341
+A NSG GT+
Sbjct: 165 AAAGNSGYSQGTI 177
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRD 601
YN +SGT M+ PHV+G+ + +P S + +RS + A++ D
Sbjct: 243 YNTISGTXMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597
Y +SGTSM+ PHVAGV GLL A S S IR+AI TA
Sbjct: 218 YASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTA 256
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 69/191 (36%), Gaps = 56/191 (29%)
Query: 159 PESKSFSDEGYGP----VPSRWKGTCQNSTK-----EGVRCNR-----KLIGARYFNRAY 204
P FS YGP P W + K GV+ N K++G F
Sbjct: 3 PNDPYFSSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDF---- 58
Query: 205 AAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAA 264
V+ ++T ++ GHGTH A V G A G +PKA + A
Sbjct: 59 ----------VDNDSTPQNGNGHGTHCAGIAAA-------VTNNSTGIA-GTAPKASILA 100
Query: 265 YKV-------CWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGA 317
+V W V++G + AD G VIS+SLGG N G
Sbjct: 101 VRVLDNSGSGTWTAVANGITYAAD----------QGAKVISLSLGGTVG---NSGLQQAV 147
Query: 318 FHAVKHGIVVV 328
+A G VVV
Sbjct: 148 NYAWNKGSVVV 158
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597
Y +SGTSM+ PHVAGV GLL A S S IR+AI TA
Sbjct: 218 YASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTA 256
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 69/191 (36%), Gaps = 56/191 (29%)
Query: 159 PESKSFSDEGYGP----VPSRWKGTCQNSTK-----EGVRCNR-----KLIGARYFNRAY 204
P FS YGP P W + K GV+ N K++G F
Sbjct: 3 PNDPYFSSRQYGPQKIQAPQAWDIAEGSGAKIAIVDTGVQSNHPDLAGKVVGGWDF---- 58
Query: 205 AAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAA 264
V+ ++T ++ GHGTH A V G A G +PKA + A
Sbjct: 59 ----------VDNDSTPQNGNGHGTHCAGIAAA-------VTNNSTGIA-GTAPKASILA 100
Query: 265 YKV-------CWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGA 317
+V W V++G + AD G VIS+SLGG N G
Sbjct: 101 VRVLDNSGSGTWTAVANGITYAAD----------QGAKVISLSLGGTVG---NSGLQQAV 147
Query: 318 FHAVKHGIVVV 328
+A G VVV
Sbjct: 148 NYAWNKGSVVV 158
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 40/149 (26%)
Query: 209 KQHNISVNF-NNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKV 267
K + NF +N+ D +GHGTH +A N G V+G+ +P+A + AYKV
Sbjct: 52 KDFTVGTNFTDNSCTDRQGHGTHVAGSALANGGTGSGVYGV--------APEADLWAYKV 103
Query: 268 CWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAF--------- 318
DG + DI + A GD A N I
Sbjct: 104 LG---DDGSGYADDIAEAIRHA-------------GDQATALNTKVVINMSLGSSGESSL 147
Query: 319 ------HAVKHGIVVVCSAANSGPELGTV 341
+A G++++ +A NSGP+ G++
Sbjct: 148 ITNAVDYAYDKGVLIIAAAGNSGPKPGSI 176
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRD 601
Y +SGTSM+ PH AG+ + P S +R + T A D
Sbjct: 242 YATISGTSMASPHAAGLAAKIWAQSPAASNVDVRGELQTRASVND 286
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 560 MSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTART 599
++GTSM+ PHVAGV L +P +P+++ SAI+ A T
Sbjct: 218 LNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATT 257
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 552 TRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597
T N +SGTSM+ PHVAGV L +P+ SP+ + + + T A
Sbjct: 212 TSNSATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRA 257
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTA 597
Y+ GTSM+ PHV GVV +L P+ P IR + TA
Sbjct: 374 YDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTA 414
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKAT 616
Y MSGTSM+ PHVAG+ LL A + IR AI TA T + G
Sbjct: 219 YAYMSGTSMASPHVAGLAALL--ASQGRNNIEIRQAIEQTADKISGTGTYFKYGRINSYN 276
Query: 617 PFSY 620
+Y
Sbjct: 277 AVTY 280
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 51/132 (38%), Gaps = 31/132 (23%)
Query: 475 DGVKVLDYIKSSDNPM-----------GYITSPSTYLNA---------KPS--------P 506
D V DY++ +D + G I++P T NA +PS
Sbjct: 141 DSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNIN 200
Query: 507 FMASFSSAGPNKITPEILKPDITAPGVNXXXXXXXXXXXXELPYDTRRIPYNIMSGTSMS 566
+A FSS GP K +KPD+ APG + Y M GTSM+
Sbjct: 201 HVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSF-WANHDSKYAYMGGTSMA 257
Query: 567 CPHVAGVVGLLK 578
P VAG V L+
Sbjct: 258 TPIVAGNVAQLR 269
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTA----HPDWSPSAIRSAIMTT 596
Y+ M+GTSM+ PHV+GV L+ +A + + +P+ ++ +++T
Sbjct: 269 YSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVST 312
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 557 YN-IMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPM 607
YN +M+GTS + P +G + LL +A+PD S +R + +A D P+
Sbjct: 328 YNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPV 379
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTA----HPDWSPSAIRSAIMTT 596
Y+ M+GTSM+ PHV+GV L+ +A + + +P+ ++ +++T
Sbjct: 269 YSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVST 312
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%), Gaps = 4/44 (9%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTA----HPDWSPSAIRSAIMTT 596
Y+ M+GTSM+ PHV+GV L+ +A + + +P+ ++ +++T
Sbjct: 269 YSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVST 312
>pdb|3ZXX|A Chain A, Structure Of Self-cleaved Protease Domain Of Pata
Length = 307
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 19/131 (14%)
Query: 227 HGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQ--CFDADILK 284
HGTH S +FG + G +P+ R + P SD + D+ +
Sbjct: 70 HGTHVASI----------IFGQPETSVPGIAPQCR----GLIVPIFSDDRRRITQLDLAR 115
Query: 285 GFDMAIHDGVDVISVSLGGDPADYFN-DGTAIGAFHAVKHG-IVVVCSAANSGPELGTVT 342
G + A++ G +I++S GG+ D+ DG A + +++V +A N+G + V
Sbjct: 116 GIERAVNAGAHIINIS-GGELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVP 174
Query: 343 NVSPWIITVGA 353
P ++ VGA
Sbjct: 175 AALPAVLAVGA 185
>pdb|4H6V|A Chain A, Structure Of Patellamide Maturation Protease Pata
Length = 306
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 19/131 (14%)
Query: 227 HGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQ--CFDADILK 284
HGTH S +FG + G +P+ R + P SD + D+ +
Sbjct: 61 HGTHVASI----------IFGQPETSVPGIAPQCR----GLIVPIFSDDRRRITQLDLAR 106
Query: 285 GFDMAIHDGVDVISVSLGGDPADYFN-DGTAIGAFHAVKHG-IVVVCSAANSGPELGTVT 342
G + A++ G +I++S GG+ D+ DG A + +++V +A N+G + V
Sbjct: 107 GIERAVNAGAHIINIS-GGELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVP 165
Query: 343 NVSPWIITVGA 353
P ++ VGA
Sbjct: 166 AALPAVLAVGA 176
>pdb|2EK8|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1
pdb|2EK9|A Chain A, Aminopeptidase From Aneurinibacillus Sp. Strain Am-1 With
Bestatin
Length = 421
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 418 VKGKILVCLRGDTARVDKGRQAAVAGAVGMILCND---KSSGNEITADPHFLPASQITYK 474
+ GKI + RG+ + DK R AA GA +I+ N+ K +G +D F+ A IT +
Sbjct: 113 LNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQ 172
Query: 475 DG 476
+G
Sbjct: 173 EG 174
>pdb|3ZXY|A Chain A, Structure Of S218a Mutant Of The Protease Domain Of Pata
Length = 282
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 19/131 (14%)
Query: 227 HGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQ--CFDADILK 284
HGTH S +FG + G +P+ R + P SD + D+ +
Sbjct: 51 HGTHVASI----------IFGQPETSVPGIAPQCR----GLIVPIFSDDRRRITQLDLAR 96
Query: 285 GFDMAIHDGVDVISVSLGGDPADYFN-DGTAIGAFHAVKHG-IVVVCSAANSGPELGTVT 342
G + A++ G +I++S GG+ D+ DG A + +++V +A N+G + V
Sbjct: 97 GIERAVNAGAHIINIS-GGELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVP 155
Query: 343 NVSPWIITVGA 353
P ++ VGA
Sbjct: 156 AALPAVLAVGA 166
>pdb|1R64|A Chain A, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
pdb|1R64|B Chain B, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
Length = 481
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 558 NIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRS-AIMTTARTRDNTANPMRDGSFKKAT 616
N GTS + P AGV LL A+P+ + ++ +I++ N RD + K
Sbjct: 259 NSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKY 318
Query: 617 PFSYGSGHIRPNRAMD 632
YG G I ++ ++
Sbjct: 319 SHRYGFGKIDAHKLIE 334
>pdb|1OT5|A Chain A, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
A Peptidyl- Boronic Acid Inhibitor
pdb|1OT5|B Chain B, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
A Peptidyl- Boronic Acid Inhibitor
Length = 477
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 558 NIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRS-AIMTTARTRDNTANPMRDGSFKKAT 616
N GTS + P AGV LL A+P+ + ++ +I++ N RD + K
Sbjct: 257 NSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKY 316
Query: 617 PFSYGSGHIRPNRAMD 632
YG G I ++ ++
Sbjct: 317 SHRYGFGKIDAHKLIE 332
>pdb|2ID4|A Chain A, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor.
pdb|2ID4|B Chain B, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor
Length = 503
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 558 NIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRS-AIMTTARTRDNTANPMRDGSFKKAT 616
N GTS + P AGV LL A+P+ + ++ +I++ N RD + K
Sbjct: 266 NSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKY 325
Query: 617 PFSYGSGHIRPNRAMD 632
YG G I ++ ++
Sbjct: 326 SHRYGFGKIDAHKLIE 341
>pdb|3FEC|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Iii
(GcpiiiNAALADASE II), PSEUDO-Unliganded
pdb|3FED|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH A TRANSITION STATE ANALOG OF Glu-Glu
pdb|3FEE|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH QUISQUALIC ACID
pdb|3FF3|A Chain A, The High Resolution Structure Of Human Glutamate
Carboxypeptidase Iii (GcpiiiNAALADASE II) IN COMPLEX
WITH L-Glutamate
Length = 707
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 420 GKILVCLRGDTARVDKGRQAAVAGAVGMILCND 452
GKI++ G R +K + A +AGA+G+IL +D
Sbjct: 155 GKIVIARYGKIFRGNKVKNAMLAGAIGIILYSD 187
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 554 RIPYNIMSGTSMSCPHVAGVVGLLKTA 580
R Y + +GTSM+ PHV+GV L+ +A
Sbjct: 267 RSSYGMKAGTSMAAPHVSGVAALVISA 293
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 557 YNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMR 608
Y +SGTSM+ PHVAGV L + +P ++ + +R +N + R
Sbjct: 213 YKTISGTSMATPHVAGVAALYLQENNGLTP--LQLTGLLNSRASENKVSDTR 262
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 554 RIPYNIMSGTSMSCPHVAGVVGLLKTA 580
R Y + +GTSM+ PHV+GV L+ +A
Sbjct: 267 RSSYGMKAGTSMAAPHVSGVAALVISA 293
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 560 MSGTSMSCPHVAGVVGLLKTAHPDWSPSAIR 590
+SGTSM+ PHVAG+ L T + SA R
Sbjct: 220 ISGTSMATPHVAGLAAYLMTLGKTTAASACR 250
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 560 MSGTSMSCPHVAGVVGLLKTAHPDWSPSAIR 590
+SGTSM+ PHVAG+ L T + SA R
Sbjct: 220 ISGTSMATPHVAGLAAYLMTLGKTTAASACR 250
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 560 MSGTSMSCPHVAGVVGLLKTAHPDWSPSAIR 590
+SGTSM+ PHVAG+ L T + SA R
Sbjct: 220 ISGTSMATPHVAGLAAYLMTLGKTTAASACR 250
>pdb|3SO0|A Chain A, Crystal Structure Of A Mutant T41s Of A
Betagamma-Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO0|B Chain B, Crystal Structure Of A Mutant T41s Of A
Betagamma-Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO0|C Chain C, Crystal Structure Of A Mutant T41s Of A
Betagamma-Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO0|D Chain D, Crystal Structure Of A Mutant T41s Of A
Betagamma-Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO0|E Chain E, Crystal Structure Of A Mutant T41s Of A
Betagamma-Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO0|F Chain F, Crystal Structure Of A Mutant T41s Of A
Betagamma-Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO0|G Chain G, Crystal Structure Of A Mutant T41s Of A
Betagamma-Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO0|H Chain H, Crystal Structure Of A Mutant T41s Of A
Betagamma-Crystallin Domain From Clostridium
Beijerinckii
Length = 97
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 675 EDFNYPSISVPMISGSVTLSRKLKNVGSPSNYAASVREPLGISVSV 720
ED NY SV + G+ TLS+ L P+++ +S++ P G +V V
Sbjct: 10 EDINYGGASVSLQPGNYTLSQ-LNTAKIPNDWMSSLKVPSGWTVDV 54
>pdb|3SO1|A Chain A, Crystal Structure Of A Double Mutant T41s T82s Of A
Betagamma- Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO1|B Chain B, Crystal Structure Of A Double Mutant T41s T82s Of A
Betagamma- Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO1|C Chain C, Crystal Structure Of A Double Mutant T41s T82s Of A
Betagamma- Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO1|D Chain D, Crystal Structure Of A Double Mutant T41s T82s Of A
Betagamma- Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO1|E Chain E, Crystal Structure Of A Double Mutant T41s T82s Of A
Betagamma- Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO1|F Chain F, Crystal Structure Of A Double Mutant T41s T82s Of A
Betagamma- Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO1|G Chain G, Crystal Structure Of A Double Mutant T41s T82s Of A
Betagamma- Crystallin Domain From Clostridium
Beijerinckii
pdb|3SO1|H Chain H, Crystal Structure Of A Double Mutant T41s T82s Of A
Betagamma- Crystallin Domain From Clostridium
Beijerinckii
Length = 97
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 675 EDFNYPSISVPMISGSVTLSRKLKNVGSPSNYAASVREPLGISVSV 720
ED NY SV + G+ TLS+ L P+++ +S++ P G +V V
Sbjct: 10 EDINYGGASVSLQPGNYTLSQ-LNTAKIPNDWMSSLKVPSGWTVDV 54
>pdb|1NFG|A Chain A, Structure Of D-Hydantoinase
pdb|1NFG|B Chain B, Structure Of D-Hydantoinase
pdb|1NFG|C Chain C, Structure Of D-Hydantoinase
pdb|1NFG|D Chain D, Structure Of D-Hydantoinase
Length = 457
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 279 DADILKGFDMAIHDGVDVISVSLGGDPADYFND-----GTAIGAFHAVKHGIVVVCSAAN 333
D +LK D A+ G V+ + GD ADY D G +HA+ V A
Sbjct: 161 DVTLLKTLDKAVKTGSLVMVHAENGDAADYLRDKFVAEGKTAPIYHALSRPPRVEAEATA 220
Query: 334 SGPELGTVTNVSPWIITV 351
L + N +I+ V
Sbjct: 221 RALALAEIVNAPIYIVHV 238
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 61/155 (39%), Gaps = 31/155 (20%)
Query: 223 DHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADI 282
D GHGTH T G G AK K ++ KV + G + I
Sbjct: 68 DGNGHGTHCAGTIGSKTY----------GVAK----KTKIYGVKVL---DNSGSGSYSGI 110
Query: 283 LKGFDMAIHD--------GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANS 334
+ G D A+ D GV V ++SLGG A NDG A ++ G+ + +A N
Sbjct: 111 ISGMDFAVQDSKSRSCPKGV-VANMSLGGGKAQSVNDGAAA----MIRAGVFLAVAAGND 165
Query: 335 GPELGTVTNVS-PWIITVGASTLDREFQNFVELRN 368
+ S P + TVGA+T +F N
Sbjct: 166 NANAANYSPASEPTVCTVGATTSSDARSSFSNYGN 200
>pdb|3QUF|A Chain A, The Structure Of A Family 1 Extracellular Solute-Binding
Protein From Bifidobacterium Longum Subsp. Infantis
pdb|3QUF|B Chain B, The Structure Of A Family 1 Extracellular Solute-Binding
Protein From Bifidobacterium Longum Subsp. Infantis
Length = 414
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Query: 101 KHPDVVSIFPNKGKKLHTTRSWDFMLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPE 160
K P F GKK+++ S F+ N + S + +GE +LD +W
Sbjct: 155 KFPKTWDEFIEXGKKINSNGSTAFLEDFNTQIAGSFTGLLASYYGEQGKSGDLDADIWSG 214
Query: 161 SKSFSDEGYGPVPSRWKGTCQ 181
+F+ + + PV RW+ +
Sbjct: 215 KSTFTKD-WTPVFKRWEAAAK 234
>pdb|3SNY|A Chain A, Crystal Structure Of A Mutant T82r Of A
Betagamma-Crystallin Domain From Clostridium
Beijerinckii
Length = 97
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 675 EDFNYPSISVPMISGSVTLSRKLKNVGSPSNYAASVREPLGISVSV 720
ED NY SV + G+ TLS+ L P+++ S++ P G +V V
Sbjct: 10 EDINYGGASVSLQPGNYTLSQ-LNTAKIPNDWMTSLKVPSGWTVDV 54
>pdb|3IAJ|A Chain A, Crystal Structure Of A Betagamma-Crystallin Domain From
Clostridium Beijerinckii-In Alternate Space Group I422
Length = 87
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 675 EDFNYPSISVPMISGSVTLSRKLKNVGSPSNYAASVREPLGISVSV 720
ED NY SV + G+ TLS+ L P+++ S++ P G +V V
Sbjct: 7 EDINYGGASVSLQPGNYTLSQ-LNTAKIPNDWMTSLKVPSGWTVDV 51
>pdb|3I9H|A Chain A, Crystal Structure Of A Betagamma-Crystallin Domain From
Clostridium Beijerinckii
pdb|3I9H|B Chain B, Crystal Structure Of A Betagamma-Crystallin Domain From
Clostridium Beijerinckii
pdb|3I9H|C Chain C, Crystal Structure Of A Betagamma-Crystallin Domain From
Clostridium Beijerinckii
pdb|3I9H|D Chain D, Crystal Structure Of A Betagamma-Crystallin Domain From
Clostridium Beijerinckii
pdb|3I9H|E Chain E, Crystal Structure Of A Betagamma-Crystallin Domain From
Clostridium Beijerinckii
pdb|3I9H|F Chain F, Crystal Structure Of A Betagamma-Crystallin Domain From
Clostridium Beijerinckii
pdb|3I9H|G Chain G, Crystal Structure Of A Betagamma-Crystallin Domain From
Clostridium Beijerinckii
pdb|3I9H|H Chain H, Crystal Structure Of A Betagamma-Crystallin Domain From
Clostridium Beijerinckii
Length = 88
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 675 EDFNYPSISVPMISGSVTLSRKLKNVGSPSNYAASVREPLGISVSV 720
ED NY SV + G+ TLS+ L P+++ S++ P G +V V
Sbjct: 8 EDINYGGASVSLQPGNYTLSQ-LNTAKIPNDWMTSLKVPSGWTVDV 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,328,848
Number of Sequences: 62578
Number of extensions: 1055655
Number of successful extensions: 2525
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 2218
Number of HSP's gapped (non-prelim): 215
length of query: 782
length of database: 14,973,337
effective HSP length: 106
effective length of query: 676
effective length of database: 8,340,069
effective search space: 5637886644
effective search space used: 5637886644
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)