Query 048642
Match_columns 782
No_of_seqs 467 out of 3127
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 11:33:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 3.4E-52 7.5E-57 448.0 27.3 306 114-598 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 3.6E-51 7.8E-56 455.7 21.8 303 124-637 295-618 (639)
3 cd07479 Peptidases_S8_SKI-1_li 100.0 5.6E-49 1.2E-53 410.2 22.8 244 139-601 1-254 (255)
4 cd07497 Peptidases_S8_14 Pepti 100.0 1.3E-48 2.8E-53 416.2 23.4 287 145-597 1-311 (311)
5 cd05562 Peptidases_S53_like Pe 100.0 2.7E-48 5.8E-53 407.9 22.9 270 142-632 1-274 (275)
6 cd07475 Peptidases_S8_C5a_Pept 100.0 1.2E-47 2.6E-52 420.4 26.2 317 137-632 1-346 (346)
7 cd07489 Peptidases_S8_5 Peptid 100.0 1.8E-47 3.9E-52 412.5 25.2 294 136-635 3-301 (312)
8 cd07478 Peptidases_S8_CspA-lik 100.0 3.4E-47 7.3E-52 425.5 25.9 408 143-623 1-455 (455)
9 cd07476 Peptidases_S8_thiazoli 100.0 1.9E-46 4.1E-51 392.8 23.4 249 138-603 2-255 (267)
10 cd05561 Peptidases_S8_4 Peptid 100.0 7E-46 1.5E-50 383.4 22.8 238 148-623 1-239 (239)
11 cd07474 Peptidases_S8_subtilis 100.0 1.9E-45 4.1E-50 394.3 25.6 291 145-630 1-295 (295)
12 cd07483 Peptidases_S8_Subtilis 100.0 6.2E-45 1.3E-49 387.5 22.8 267 146-598 1-291 (291)
13 cd07493 Peptidases_S8_9 Peptid 100.0 1.3E-44 2.8E-49 380.4 22.3 245 147-598 1-261 (261)
14 cd07481 Peptidases_S8_Bacillop 100.0 1.7E-44 3.7E-49 379.9 22.9 247 145-598 1-264 (264)
15 KOG1153 Subtilisin-related pro 100.0 7.9E-45 1.7E-49 376.8 16.9 332 28-598 78-461 (501)
16 cd07485 Peptidases_S8_Fervidol 100.0 5.1E-44 1.1E-48 378.2 23.3 264 137-596 1-273 (273)
17 cd04857 Peptidases_S8_Tripepti 100.0 1.2E-43 2.6E-48 384.5 25.5 223 222-600 182-412 (412)
18 cd07487 Peptidases_S8_1 Peptid 100.0 2.5E-43 5.5E-48 371.8 24.2 257 145-598 1-264 (264)
19 cd04077 Peptidases_S8_PCSK9_Pr 100.0 8.4E-43 1.8E-47 365.5 23.2 233 138-599 17-255 (255)
20 cd07484 Peptidases_S8_Thermita 100.0 2.2E-42 4.8E-47 363.5 23.2 242 135-600 18-259 (260)
21 cd04847 Peptidases_S8_Subtilis 100.0 1.1E-42 2.3E-47 371.6 19.5 266 149-598 2-291 (291)
22 cd07490 Peptidases_S8_6 Peptid 100.0 3.5E-42 7.6E-47 360.8 22.5 253 147-598 1-254 (254)
23 cd07494 Peptidases_S8_10 Pepti 100.0 4.3E-42 9.4E-47 365.4 21.3 252 135-602 10-287 (298)
24 cd07496 Peptidases_S8_13 Pepti 100.0 1.2E-41 2.5E-46 362.5 23.0 207 220-596 66-285 (285)
25 cd07498 Peptidases_S8_15 Pepti 100.0 1.4E-41 3.1E-46 353.5 20.9 240 148-596 1-242 (242)
26 cd04842 Peptidases_S8_Kp43_pro 100.0 2.6E-41 5.6E-46 362.0 23.0 279 141-598 2-293 (293)
27 cd04843 Peptidases_S8_11 Pepti 100.0 2.1E-41 4.5E-46 356.1 20.5 245 135-598 4-277 (277)
28 cd07480 Peptidases_S8_12 Pepti 100.0 3.4E-41 7.5E-46 360.7 22.3 264 141-628 3-296 (297)
29 cd07473 Peptidases_S8_Subtilis 100.0 1.1E-40 2.3E-45 350.7 24.1 250 146-598 2-259 (259)
30 cd07477 Peptidases_S8_Subtilis 100.0 7.1E-41 1.5E-45 345.4 22.2 227 147-596 1-229 (229)
31 cd07491 Peptidases_S8_7 Peptid 100.0 1.9E-40 4.2E-45 343.2 18.1 161 145-356 2-171 (247)
32 cd07492 Peptidases_S8_8 Peptid 100.0 1.3E-39 2.8E-44 334.2 21.4 222 147-598 1-222 (222)
33 PF00082 Peptidase_S8: Subtila 100.0 1.6E-40 3.5E-45 353.9 14.6 274 149-632 1-282 (282)
34 cd07482 Peptidases_S8_Lantibio 100.0 1.5E-39 3.2E-44 348.6 20.9 254 147-596 1-294 (294)
35 cd04059 Peptidases_S8_Protein_ 100.0 8.4E-40 1.8E-44 350.9 18.7 248 135-598 28-297 (297)
36 KOG4266 Subtilisin kexin isozy 100.0 4.2E-38 9.1E-43 334.5 25.0 360 30-633 49-466 (1033)
37 cd04848 Peptidases_S8_Autotran 100.0 2.4E-38 5.1E-43 334.3 21.1 244 144-598 1-267 (267)
38 cd07488 Peptidases_S8_2 Peptid 100.0 1.8E-33 3.9E-38 290.0 17.8 193 220-596 32-246 (247)
39 KOG1114 Tripeptidyl peptidase 100.0 6.1E-33 1.3E-37 307.7 20.9 359 224-776 309-691 (1304)
40 cd00306 Peptidases_S8_S53 Pept 100.0 5.1E-31 1.1E-35 272.9 21.9 197 220-596 39-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 5E-24 1.1E-28 245.0 21.7 274 135-632 129-420 (508)
42 KOG3526 Subtilisin-like propro 99.9 7.4E-24 1.6E-28 214.9 10.8 300 135-643 150-468 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 3.6E-17 7.7E-22 179.3 13.6 101 251-358 81-198 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.3 1.6E-11 3.5E-16 116.4 11.8 117 384-518 25-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.3 4E-11 8.6E-16 111.4 12.9 123 364-492 2-125 (126)
46 PF05922 Inhibitor_I9: Peptida 98.9 3.2E-09 6.9E-14 90.5 6.9 78 32-117 1-82 (82)
47 cd02129 PA_hSPPL_like PA_hSPPL 98.9 1.2E-08 2.6E-13 92.1 9.8 83 403-485 28-114 (120)
48 cd02122 PA_GRAIL_like PA _GRAI 98.9 1.4E-08 2.9E-13 95.0 10.2 91 403-493 42-138 (138)
49 cd04816 PA_SaNapH_like PA_SaNa 98.8 1.3E-08 2.9E-13 93.6 9.7 88 405-492 29-121 (122)
50 cd02127 PA_hPAP21_like PA_hPAP 98.8 1.8E-08 3.9E-13 91.6 10.2 89 405-494 21-117 (118)
51 cd04818 PA_subtilisin_1 PA_sub 98.7 4.7E-08 1E-12 89.5 9.8 89 403-492 25-117 (118)
52 cd02130 PA_ScAPY_like PA_ScAPY 98.7 1.1E-07 2.5E-12 87.5 12.1 86 406-492 32-121 (122)
53 cd02126 PA_EDEM3_like PA_EDEM3 98.7 5.4E-08 1.2E-12 89.9 9.6 86 405-491 27-124 (126)
54 PF02225 PA: PA domain; Inter 98.7 1.7E-08 3.7E-13 89.7 5.9 80 404-483 18-101 (101)
55 cd00538 PA PA: Protease-associ 98.7 1.1E-07 2.3E-12 88.2 9.4 88 404-491 29-124 (126)
56 cd02132 PA_GO-like PA_GO-like: 98.6 1.3E-07 2.8E-12 88.9 9.5 84 405-491 48-137 (139)
57 cd04817 PA_VapT_like PA_VapT_l 98.6 1.2E-07 2.7E-12 88.0 8.8 75 412-486 49-134 (139)
58 PF06280 DUF1034: Fn3-like dom 98.6 3.2E-07 6.9E-12 83.1 10.8 88 682-770 1-112 (112)
59 cd02125 PA_VSR PA_VSR: Proteas 98.6 2.2E-07 4.7E-12 85.7 9.4 89 404-492 21-126 (127)
60 cd02124 PA_PoS1_like PA_PoS1_l 98.6 2.5E-07 5.5E-12 85.5 9.8 89 403-492 39-128 (129)
61 cd04813 PA_1 PA_1: Protease-as 98.6 2.5E-07 5.5E-12 83.9 8.8 82 403-486 25-112 (117)
62 KOG3525 Subtilisin-like propro 98.5 3.9E-07 8.5E-12 101.1 10.6 156 135-337 22-187 (431)
63 cd02123 PA_C_RZF_like PA_C-RZF 98.5 5.5E-07 1.2E-11 86.0 9.5 84 405-488 50-142 (153)
64 COG4934 Predicted protease [Po 98.4 3.3E-06 7.2E-11 100.7 14.2 95 252-353 287-395 (1174)
65 cd04819 PA_2 PA_2: Protease-as 98.3 6.8E-06 1.5E-10 76.1 12.2 78 411-488 36-122 (127)
66 cd04815 PA_M28_2 PA_M28_2: Pro 97.7 0.00018 3.8E-09 67.3 8.3 79 413-491 33-132 (134)
67 cd04814 PA_M28_1 PA_M28_1: Pro 96.9 0.0023 5E-08 59.9 6.8 63 385-454 20-100 (142)
68 cd02128 PA_TfR PA_TfR: Proteas 96.9 0.0022 4.7E-08 62.5 6.6 71 415-485 51-155 (183)
69 KOG2442 Uncharacterized conser 96.8 0.0045 9.8E-08 67.3 8.8 82 415-496 91-178 (541)
70 cd04820 PA_M28_1_1 PA_M28_1_1: 96.5 0.004 8.7E-08 57.9 5.3 50 405-454 35-96 (137)
71 cd04822 PA_M28_1_3 PA_M28_1_3: 96.3 0.0066 1.4E-07 57.5 5.5 50 405-454 33-100 (151)
72 PF14874 PapD-like: Flagellar- 96.2 0.11 2.3E-06 45.9 12.5 80 689-772 20-100 (102)
73 PF10633 NPCBM_assoc: NPCBM-as 95.8 0.043 9.2E-07 46.0 7.4 63 689-751 5-69 (78)
74 cd02121 PA_GCPII_like PA_GCPII 95.7 0.015 3.3E-07 58.6 5.1 48 407-454 54-106 (220)
75 cd02131 PA_hNAALADL2_like PA_h 95.6 0.015 3.3E-07 54.3 4.4 39 416-454 37-75 (153)
76 KOG3920 Uncharacterized conser 95.5 0.021 4.6E-07 52.7 4.8 92 403-495 72-173 (193)
77 KOG4628 Predicted E3 ubiquitin 94.3 0.1 2.2E-06 55.8 6.9 80 406-485 63-149 (348)
78 PF11614 FixG_C: IG-like fold 90.6 4.6 0.0001 36.6 11.8 54 690-744 32-86 (118)
79 cd04821 PA_M28_1_2 PA_M28_1_2: 90.0 0.49 1.1E-05 45.3 5.0 44 411-454 41-103 (157)
80 PF06030 DUF916: Bacterial pro 87.7 7.4 0.00016 35.6 10.8 68 689-759 27-119 (121)
81 COG1470 Predicted membrane pro 87.6 3.3 7.2E-05 45.7 9.7 71 689-760 397-469 (513)
82 KOG1114 Tripeptidyl peptidase 79.9 1.2 2.6E-05 52.8 2.6 24 142-165 77-100 (1304)
83 PF00345 PapD_N: Pili and flag 72.7 25 0.00055 31.9 8.9 68 689-759 14-89 (122)
84 PF07718 Coatamer_beta_C: Coat 68.8 41 0.00088 31.4 9.1 67 690-759 70-138 (140)
85 COG1470 Predicted membrane pro 68.1 61 0.0013 36.3 11.7 62 689-751 284-352 (513)
86 TIGR02745 ccoG_rdxA_fixG cytoc 64.8 43 0.00094 37.8 10.3 54 690-744 347-401 (434)
87 PF00635 Motile_Sperm: MSP (Ma 59.7 41 0.0009 29.5 7.5 53 689-744 18-71 (109)
88 PF07705 CARDB: CARDB; InterP 54.7 72 0.0016 27.2 8.1 51 689-743 19-72 (101)
89 PF00927 Transglut_C: Transglu 45.5 1.6E+02 0.0034 25.9 8.8 55 688-744 14-78 (107)
90 PRK15098 beta-D-glucoside gluc 45.4 50 0.0011 40.4 7.3 53 689-744 667-729 (765)
91 PF12690 BsuPI: Intracellular 45.4 1.3E+02 0.0027 25.4 7.6 21 723-744 52-72 (82)
92 smart00635 BID_2 Bacterial Ig- 42.8 76 0.0016 26.4 6.0 39 717-761 4-42 (81)
93 KOG2018 Predicted dinucleotide 40.7 52 0.0011 34.9 5.3 80 253-333 137-246 (430)
94 smart00237 Calx_beta Domains i 39.3 2.4E+02 0.0052 24.0 9.7 61 680-743 9-76 (90)
95 PF05753 TRAP_beta: Translocon 36.9 2.2E+02 0.0049 28.0 9.0 64 689-755 38-107 (181)
96 TIGR00845 caca sodium/calcium 36.3 3.9E+02 0.0085 33.2 12.5 62 680-744 407-476 (928)
97 PLN03080 Probable beta-xylosid 35.1 89 0.0019 38.3 7.2 52 690-742 685-744 (779)
98 PF07610 DUF1573: Protein of u 34.2 1.2E+02 0.0025 22.2 5.0 43 695-740 2-45 (45)
99 PF05506 DUF756: Domain of unk 33.7 2.9E+02 0.0064 23.3 8.8 47 689-740 18-65 (89)
100 PF02845 CUE: CUE domain; Int 31.5 48 0.001 23.8 2.5 23 574-596 5-27 (42)
101 PF08260 Kinin: Insect kinin p 29.4 25 0.00054 16.0 0.4 6 510-515 3-8 (8)
102 PF13940 Ldr_toxin: Toxin Ldr, 27.8 48 0.001 22.6 1.8 13 565-577 14-26 (35)
103 PF03160 Calx-beta: Calx-beta 27.3 4E+02 0.0086 22.8 9.1 66 678-744 16-87 (100)
104 PRK15019 CsdA-binding activato 26.1 63 0.0014 30.6 3.0 32 559-591 78-109 (147)
105 TIGR03391 FeS_syn_CsdE cystein 24.5 71 0.0015 29.9 3.0 34 558-592 72-105 (138)
106 PF04255 DUF433: Protein of un 21.7 77 0.0017 24.5 2.2 38 557-594 11-54 (56)
107 PRK09296 cysteine desufuration 21.7 87 0.0019 29.3 3.0 32 559-591 68-99 (138)
108 PF08821 CGGC: CGGC domain; I 21.6 2.5E+02 0.0054 25.0 5.7 41 258-304 36-76 (107)
109 COG4808 Uncharacterized protei 21.1 3.7E+02 0.008 25.0 6.6 35 72-106 91-125 (152)
110 smart00546 CUE Domain that may 20.5 1.4E+02 0.0031 21.4 3.4 24 573-596 5-28 (43)
111 PF02657 SufE: Fe-S metabolism 20.3 1E+02 0.0022 28.3 3.1 33 559-592 59-91 (125)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.4e-52 Score=447.99 Aligned_cols=306 Identities=55% Similarity=0.875 Sum_probs=258.0
Q ss_pred ccccccccccccccccCCcccCCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCC-Ccccccc
Q 048642 114 KKLHTTRSWDFMLLENNGVIHSSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTK-EGVRCNR 192 (782)
Q Consensus 114 ~~~~~~~s~~~~g~~~~~~~~~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~-~~~~~~~ 192 (782)
+++++++++.++|+...- ...+|..+.+|+||+|||||||||++||+|.+.+..+++..|.+.|..+.. ....|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAW---GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNN 77 (307)
T ss_pred CCccccCCHHHcCCCCCC---CcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCC
Confidence 468899999999988542 122577799999999999999999999999999899999999999998877 5677999
Q ss_pred cccccccchhhHhhhcccccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCC
Q 048642 193 KLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQV 272 (782)
Q Consensus 193 ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~ 272 (782)
|+++.++|.+++....+ .+... +..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++..
T Consensus 78 ki~g~~~~~~~~~~~~~-~~~~~-~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~- 154 (307)
T cd04852 78 KLIGARYFSDGYDAYGG-FNSDG-EYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPD- 154 (307)
T ss_pred eEEEEEEcccchhhccC-ccccc-CCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCC-
Confidence 99999999877654322 11111 3567789999999999999999877666666667788999999999999999874
Q ss_pred CCCCCChhHHHHHHHHhhhCCCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEc
Q 048642 273 SDGQCFDADILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVG 352 (782)
Q Consensus 273 ~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVg 352 (782)
+.+..+++++||++|++++++|||||||......+.+.+..++.++.++|++||+||||+|+...+.++..||+++||
T Consensus 155 --~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vg 232 (307)
T cd04852 155 --GGCFGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVA 232 (307)
T ss_pred --CCccHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEE
Confidence 368899999999999999999999999998545567788888889999999999999999988778888899999999
Q ss_pred cccCCccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcch
Q 048642 353 ASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTAR 432 (782)
Q Consensus 353 as~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~ 432 (782)
|++
T Consensus 233 a~~----------------------------------------------------------------------------- 235 (307)
T cd04852 233 AST----------------------------------------------------------------------------- 235 (307)
T ss_pred ecc-----------------------------------------------------------------------------
Confidence 621
Q ss_pred hhhhHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCcccccc
Q 048642 433 VDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFS 512 (782)
Q Consensus 433 ~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fS 512 (782)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHH
Q 048642 513 SAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSA 592 (782)
Q Consensus 513 s~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~ 592 (782)
+||||+|||.+|+++++... ..........|..++|||||||+|||++|||+|++|+|+|.|||++
T Consensus 236 -----------~~~di~apG~~i~~~~~~~~---~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~ 301 (307)
T cd04852 236 -----------LKPDIAAPGVDILAAWTPEG---ADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSA 301 (307)
T ss_pred -----------CccceeeccCceeecccCcc---ccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 46799999999999987531 1112233458999999999999999999999999999999999999
Q ss_pred HHhccc
Q 048642 593 IMTTAR 598 (782)
Q Consensus 593 L~~TA~ 598 (782)
|++||+
T Consensus 302 L~~tA~ 307 (307)
T cd04852 302 LMTTAY 307 (307)
T ss_pred HHHhcC
Confidence 999984
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=3.6e-51 Score=455.74 Aligned_cols=303 Identities=18% Similarity=0.135 Sum_probs=215.3
Q ss_pred ccccccCCcccCCCccc--cCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccch
Q 048642 124 FMLLENNGVIHSSSAWG--KGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFN 201 (782)
Q Consensus 124 ~~g~~~~~~~~~~~~w~--~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~ 201 (782)
.|+++..+ ...+|. .+.+|+||+|||||||||++||||.++-... +....|.. +-+ .+++..+ +..
T Consensus 295 qWgLd~i~---~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~Grd--giD---dD~nG~v---dd~ 362 (639)
T PTZ00262 295 QWGLDLTR---LDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGRK--GID---DDNNGNV---DDE 362 (639)
T ss_pred CcCcchhC---chHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCcc--ccc---cccCCcc---ccc
Confidence 34555443 345555 4568999999999999999999998641000 00000100 000 0000000 000
Q ss_pred hhHhhhcccccccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhH
Q 048642 202 RAYAAYVKQHNISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDAD 281 (782)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~ 281 (782)
.+|++.. +...|.|..||||||||||||...+ +..+.||||+|+|+++|+++.. |.+..++
T Consensus 363 ~G~nfVd--------~~~~P~D~~GHGTHVAGIIAA~gnN--------~~Gi~GVAP~AkLi~vKVld~~---G~G~~sd 423 (639)
T PTZ00262 363 YGANFVN--------NDGGPMDDNYHGTHVSGIISAIGNN--------NIGIVGVDKRSKLIICKALDSH---KLGRLGD 423 (639)
T ss_pred ccccccC--------CCCCCCCCCCcchHHHHHHhccccC--------CCceeeeecccccceEEEecCC---CCccHHH
Confidence 1222221 2345789999999999999997432 3346899999999999999876 4678999
Q ss_pred HHHHHHHhhhCCCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCc--------------ccC----
Q 048642 282 ILKGFDMAIHDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGT--------------VTN---- 343 (782)
Q Consensus 282 i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~---- 343 (782)
+++||+||++.|++|||||||.. .....+..++.+|.++|++||+||||+|+.... ++.
T Consensus 424 I~~AI~yA~~~GA~VINmSlG~~---~~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~ 500 (639)
T PTZ00262 424 MFKCFDYCISREAHMINGSFSFD---EYSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSK 500 (639)
T ss_pred HHHHHHHHHHCCCCEEEeccccC---CccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhc
Confidence 99999999999999999999976 234567778889999999999999999854211 111
Q ss_pred CCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEE
Q 048642 344 VSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKIL 423 (782)
Q Consensus 344 ~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv 423 (782)
..|++|+|||++.+..
T Consensus 501 ~~~nVIaVGAv~~d~~---------------------------------------------------------------- 516 (639)
T PTZ00262 501 KLRNVITVSNLIKDKN---------------------------------------------------------------- 516 (639)
T ss_pred cCCCEEEEeeccCCCC----------------------------------------------------------------
Confidence 2367888887542210
Q ss_pred EEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCC
Q 048642 424 VCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAK 503 (782)
Q Consensus 424 l~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~ 503 (782)
T Consensus 517 -------------------------------------------------------------------------------- 516 (639)
T PTZ00262 517 -------------------------------------------------------------------------------- 516 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCC
Q 048642 504 PSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPD 583 (782)
Q Consensus 504 ~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~ 583 (782)
.....+.||++|.. ++||+|||++|+|+++.+ .|..++|||||||||||+||||++++|+
T Consensus 517 ~~~s~s~~Snyg~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~ 576 (639)
T PTZ00262 517 NQYSLSPNSFYSAK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPS 576 (639)
T ss_pred CcccccccccCCCC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCC
Confidence 00123456677632 349999999999998865 8999999999999999999999999999
Q ss_pred CCHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCccc-ccccCccccCCCCccc
Q 048642 584 WSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYG-SGHIRPNRAMDPGLVY 637 (782)
Q Consensus 584 ~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G-~G~vd~~~A~~~~lv~ 637 (782)
|++.||+++|++||.++... +..+| .|+||+++|++..+-+
T Consensus 577 LT~~qV~~iL~~TA~~l~~~-------------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 577 LSYEEVIRILKESIVQLPSL-------------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred CCHHHHHHHHHHhCccCCCC-------------CCccccCcEEcHHHHHHHHHhc
Confidence 99999999999999876321 22233 3899999999876644
No 3
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=5.6e-49 Score=410.17 Aligned_cols=244 Identities=25% Similarity=0.393 Sum_probs=199.7
Q ss_pred cccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCC
Q 048642 139 WGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFN 218 (782)
Q Consensus 139 w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~ 218 (782)
|+++++|+||+|||||||||.+||+|.+. +...+|. +.
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~---------------~~ 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV---------------------------KERTNWT---------------NE 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc---------------------------ccccccC---------------CC
Confidence 89999999999999999999999999742 1111121 12
Q ss_pred CCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEE
Q 048642 219 NTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVIS 298 (782)
Q Consensus 219 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn 298 (782)
....|..||||||||||+|+. ....||||+|+|+.+|++.+. +.+..+.++++|+||++++++|||
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~-----------~~~~GvAp~a~l~~~~v~~~~---~~~~~~~~~~a~~~a~~~~~~Vin 104 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSR-----------EQCLGFAPDAEIYIFRVFTNN---QVSYTSWFLDAFNYAILTKIDVLN 104 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccC-----------CCceeECCCCEEEEEEeecCC---CCchHHHHHHHHHhhhhcCCCEEE
Confidence 245578899999999999974 134899999999999999876 346677899999999999999999
Q ss_pred EccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcc--cCCCCcEEEEccccCCccceeeEEecCCeEEeeee
Q 048642 299 VSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTV--TNVSPWIITVGASTLDREFQNFVELRNGQRFKGTS 376 (782)
Q Consensus 299 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~ 376 (782)
||||... +...++..++.++.++|++||+||||+|+...+. +...+++|+|||++.
T Consensus 105 ~S~G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~-------------------- 162 (255)
T cd07479 105 LSIGGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDF-------------------- 162 (255)
T ss_pred eeccCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeecc--------------------
Confidence 9999862 3345666777788899999999999999765443 345688999997432
Q ss_pred ccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCC
Q 048642 377 LSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSG 456 (782)
Q Consensus 377 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 456 (782)
T Consensus 163 -------------------------------------------------------------------------------- 162 (255)
T cd07479 163 -------------------------------------------------------------------------------- 162 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCC----CCCCcCCeEEeCC
Q 048642 457 NEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKI----TPEILKPDITAPG 532 (782)
Q Consensus 457 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~~KPDI~APG 532 (782)
.+.++.|||+|++.. ..+++||||.|||
T Consensus 163 ------------------------------------------------~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG 194 (255)
T cd07479 163 ------------------------------------------------DDNIARFSSRGMTTWELPGGYGRVKPDIVTYG 194 (255)
T ss_pred ------------------------------------------------CCccccccCCCCCcccccCCCCCcCccEEecC
Confidence 246789999996421 2678899999999
Q ss_pred ceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCC----CCCHHHHHHHHHhcccccc
Q 048642 533 VNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHP----DWSPSAIRSAIMTTARTRD 601 (782)
Q Consensus 533 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p----~~sp~~ik~~L~~TA~~~~ 601 (782)
.+|+++.... .|..++|||||||||||++|||+|++| .++|.+||++|++||+++.
T Consensus 195 ~~i~~~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 195 SGVYGSKLKG-------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred CCeeccccCC-------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 9999886643 788999999999999999999999998 7899999999999999863
No 4
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-48 Score=416.20 Aligned_cols=287 Identities=28% Similarity=0.296 Sum_probs=191.3
Q ss_pred CCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCC
Q 048642 145 GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDH 224 (782)
Q Consensus 145 G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 224 (782)
|+||+|||||||||++||||.++.. ..|.-. +.+..++. .+++.... ....+.|.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~~--------~d~~~~~~------~g~d~~~~-------~~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLK--------FDYKAYLL------PGMDKWGG-------FYVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCcccc--------cCcCCCcc------CCcCCCCC-------ccCCCCCc
Confidence 8999999999999999999975310 000000 00001111 11111110 12346789
Q ss_pred CCccchhhhhhhccCCCCcccccc-CCCcceecCccccccccccccCCCCCCCCChhHHHH-------HHHHh--hhCCC
Q 048642 225 EGHGTHTLSTAGGNLVPGVNVFGM-GNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILK-------GFDMA--IHDGV 294 (782)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~G~-~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~-------ai~~a--~~~g~ 294 (782)
+||||||||||||....+.+.+++ ....+.||||+|+|+.+|++... +.+....+.. +++|. .++++
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 132 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFG---DVIYAWLWTAGFDPVDRKLSWIYTGGPRV 132 (311)
T ss_pred cccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecC---CcchhhhhhhccchhhhhhhhhhccCCCc
Confidence 999999999999986433332222 13457999999999999998644 1232222332 34443 36899
Q ss_pred eEEEEccCCCCCCC-----CCCHHHHHHHH-HHhcCcEEEEecCCCCCCCCccc--CCCCcEEEEccccCCccceeeEEe
Q 048642 295 DVISVSLGGDPADY-----FNDGTAIGAFH-AVKHGIVVVCSAANSGPELGTVT--NVSPWIITVGASTLDREFQNFVEL 366 (782)
Q Consensus 295 dVIn~SlG~~~~~~-----~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~~--~~~p~vitVgas~~~~~~~~~~~~ 366 (782)
+|||||||.....+ ..+..+..... +.++|+++|+||||+|+...+.. ..++++|+|||++..+....
T Consensus 133 ~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~---- 208 (311)
T cd07497 133 DVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPF---- 208 (311)
T ss_pred eEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccch----
Confidence 99999999863211 11233333333 24899999999999997655444 35789999999764321000
Q ss_pred cCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceE
Q 048642 367 RNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVG 446 (782)
Q Consensus 367 ~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g 446 (782)
+.+..
T Consensus 209 --------------------~~~~~------------------------------------------------------- 213 (311)
T cd07497 209 --------------------YLFGY------------------------------------------------------- 213 (311)
T ss_pred --------------------hhhcc-------------------------------------------------------
Confidence 00000
Q ss_pred EEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCC
Q 048642 447 MILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKP 526 (782)
Q Consensus 447 ~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KP 526 (782)
.....+.++.||||||+. ++++||
T Consensus 214 ------------------------------------------------------~~~~~~~~~~fSs~Gp~~--~g~~kP 237 (311)
T cd07497 214 ------------------------------------------------------LPGGSGDVVSWSSRGPSI--AGDPKP 237 (311)
T ss_pred ------------------------------------------------------ccCCCCCccccccCCCCc--ccCCCC
Confidence 001135789999999998 899999
Q ss_pred eEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 048642 527 DITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHP------DWSPSAIRSAIMTTA 597 (782)
Q Consensus 527 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p------~~sp~~ik~~L~~TA 597 (782)
||+|||++|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 238 dv~ApG~~i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 238 DLAAIGAFAWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred ceeccCcceEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 99999999999877542100 011224799999999999999999999999986 589999999999997
No 5
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=2.7e-48 Score=407.86 Aligned_cols=270 Identities=23% Similarity=0.212 Sum_probs=201.5
Q ss_pred CCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCC
Q 048642 142 GRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTA 221 (782)
Q Consensus 142 ~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (782)
+++|+||+|||||||||.+||++.+-.. .++.+...+.. .....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~----------------------~~l~~~~~~~~--------------~~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQAS----------------------GDLPGNVNVLG--------------DLDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccC----------------------CCCCcceeecc--------------ccCCC
Confidence 5689999999999999999986532211 11111111111 11234
Q ss_pred CCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEcc
Q 048642 222 RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSL 301 (782)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~Sl 301 (782)
.|..+|||||||||+ ||||+|+|+.+|+. ...+++++||+|++++|++||||||
T Consensus 45 ~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~--------~~~~~i~~ai~~a~~~g~~Vin~S~ 98 (275)
T cd05562 45 SGGGDEGRAMLEIIH------------------DIAPGAELAFHTAG--------GGELDFAAAIRALAAAGADIIVDDI 98 (275)
T ss_pred CCCCchHHHHHHHHh------------------ccCCCCEEEEEecC--------CCHHHHHHHHHHHHHcCCCEEEecc
Confidence 578899999999994 67999999998873 3478899999999999999999999
Q ss_pred CCCCCCC-CCCHHHHHHHHHHhc-CcEEEEecCCCCCCCCc-ccCCCCcEEEEccccCCccceeeEEecCCeEEeeeecc
Q 048642 302 GGDPADY-FNDGTAIGAFHAVKH-GIVVVCSAANSGPELGT-VTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLS 378 (782)
Q Consensus 302 G~~~~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~-~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~ 378 (782)
|.....+ .+..+..++.++.++ |++||+||||+|+.... .+...|++|+|||++...........+
T Consensus 99 g~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~----------- 167 (275)
T cd05562 99 GYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPA----------- 167 (275)
T ss_pred cccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccc-----------
Confidence 9874333 344677788888887 99999999999975432 345689999999976543110000000
Q ss_pred CCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCc
Q 048642 379 KSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNE 458 (782)
Q Consensus 379 ~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~ 458 (782)
T Consensus 168 -------------------------------------------------------------------------------- 167 (275)
T cd05562 168 -------------------------------------------------------------------------------- 167 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCc-eEEE
Q 048642 459 ITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGV-NIIA 537 (782)
Q Consensus 459 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~-~I~s 537 (782)
........+.||++||+. ++++||||+|||+ ++.+
T Consensus 168 ------------------------------------------~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~ 203 (275)
T cd05562 168 ------------------------------------------PGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTV 203 (275)
T ss_pred ------------------------------------------cCCCcccccCCcccCcCC--CCCcCCeEEcCCcccccC
Confidence 000012345678899987 7899999999975 4454
Q ss_pred eecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCCCCC
Q 048642 538 AFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATP 617 (782)
Q Consensus 538 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~ 617 (782)
....+ .|..++|||||||||||++|||+|++|+|++++||++|++||+++... ..+
T Consensus 204 ~~~~~-------------~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~-----------g~d 259 (275)
T cd05562 204 DGDGD-------------GPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEP-----------GYD 259 (275)
T ss_pred CCcCC-------------ceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCC-----------CCC
Confidence 44332 789999999999999999999999999999999999999999987432 346
Q ss_pred CcccccccCccccCC
Q 048642 618 FSYGSGHIRPNRAMD 632 (782)
Q Consensus 618 ~~~G~G~vd~~~A~~ 632 (782)
..||||+||+.+|++
T Consensus 260 ~~~G~G~vda~~Av~ 274 (275)
T cd05562 260 NASGSGLVDADRAVA 274 (275)
T ss_pred CCcCcCcccHHHHhh
Confidence 789999999999986
No 6
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=1.2e-47 Score=420.44 Aligned_cols=317 Identities=29% Similarity=0.363 Sum_probs=235.5
Q ss_pred CccccCC-CCCceEEEEecCCcCcCCCCccCCCCCCCCC---CccccccCCCCCcccccccccccccchhhHhhhccccc
Q 048642 137 SAWGKGR-FGEDIIIANLDTGVWPESKSFSDEGYGPVPS---RWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHN 212 (782)
Q Consensus 137 ~~w~~~~-~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~---~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~ 212 (782)
++|+++. +|+||+|||||||||++||+|.+....+... .+............+.+.+++..++|.++..
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNND------- 73 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCC-------
Confidence 3788888 9999999999999999999998764332111 0011111111134566778877777765411
Q ss_pred ccccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhC
Q 048642 213 ISVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD 292 (782)
Q Consensus 213 ~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~ 292 (782)
+.....|..+|||||||||+|...+.. .+..+.||||+|+|+.+|++.... .+.+....+++|++++++.
T Consensus 74 ----~~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~-~~~~~~~~~~~ai~~a~~~ 143 (346)
T cd07475 74 ----DILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPE-GGSTYDDAYAKAIEDAVKL 143 (346)
T ss_pred ----ccCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCC-CCCCCHHHHHHHHHHHHHc
Confidence 111245789999999999999863321 134679999999999999997411 1367888899999999999
Q ss_pred CCeEEEEccCCCCC-CCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCccc----------------CCCCcEEEEcccc
Q 048642 293 GVDVISVSLGGDPA-DYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVT----------------NVSPWIITVGAST 355 (782)
Q Consensus 293 g~dVIn~SlG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~----------------~~~p~vitVgas~ 355 (782)
|++|||||||.... ......+..++.++.++|++||+||||+|....... ...+++|+||++.
T Consensus 144 g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~ 223 (346)
T cd07475 144 GADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASAN 223 (346)
T ss_pred CCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecc
Confidence 99999999999832 245567778888899999999999999985432211 1245666666533
Q ss_pred CCccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhh
Q 048642 356 LDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDK 435 (782)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~ 435 (782)
...
T Consensus 224 ~~~----------------------------------------------------------------------------- 226 (346)
T cd07475 224 KKV----------------------------------------------------------------------------- 226 (346)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 100
Q ss_pred hHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCC
Q 048642 436 GRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAG 515 (782)
Q Consensus 436 ~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~G 515 (782)
.....+.++.||+||
T Consensus 227 -----------------------------------------------------------------~~~~~~~~~~~S~~G 241 (346)
T cd07475 227 -----------------------------------------------------------------PNPNGGQMSGFSSWG 241 (346)
T ss_pred -----------------------------------------------------------------CCCCCCccCCCcCCC
Confidence 011235788999999
Q ss_pred CCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhh----CCCCCHHH---
Q 048642 516 PNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTA----HPDWSPSA--- 588 (782)
Q Consensus 516 p~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~p~~sp~~--- 588 (782)
|+. .+++||||+|||.+|+++.... .|..++|||||||+|||++|||+|+ +|.|++.+
T Consensus 242 ~~~--~~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~ 306 (346)
T cd07475 242 PTP--DLDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVD 306 (346)
T ss_pred CCc--ccCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 987 8899999999999999988764 7899999999999999999999998 78999876
Q ss_pred -HHHHHHhccccccCCCCCCCCCCCCCCCCCcccccccCccccCC
Q 048642 589 -IRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMD 632 (782)
Q Consensus 589 -ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 632 (782)
||++|++||.+.... ...+.++.+..+|+|+||+.+|++
T Consensus 307 ~ik~~l~~ta~~~~~~-----~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 307 LVKNLLMNTATPPLDS-----EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHHhcCCccccc-----CCCCccCCccccCcchhcHHHhhC
Confidence 788999999853211 112456778899999999999985
No 7
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-47 Score=412.49 Aligned_cols=294 Identities=29% Similarity=0.370 Sum_probs=229.4
Q ss_pred CCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhh-Hhhhccccccc
Q 048642 136 SSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRA-YAAYVKQHNIS 214 (782)
Q Consensus 136 ~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~-~~~~~~~~~~~ 214 (782)
+.+|+.+++|+||+|||||+|||++||+|.+.-. .+.++.+.++|..+ +.....+.
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~--------------------~~~~~~~~~d~~~~~~~~~~~~~--- 59 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFG--------------------PGCKVAGGYDFVGDDYDGTNPPV--- 59 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCC--------------------CCceeccccccCCcccccccCCC---
Confidence 5799999999999999999999999999986411 11222233333211 11000000
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCC
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV 294 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~ 294 (782)
+...+.|..+|||||||||+|...+ ..+.||||+|+|+.+|++... +....+.++++|++|+++++
T Consensus 60 --~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~~~---~~~~~~~~~~ai~~a~~~~~ 125 (312)
T cd07489 60 --PDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFGCS---GSTTEDTIIAAFLRAYEDGA 125 (312)
T ss_pred --CCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeecCC---CCCCHHHHHHHHHHHHhcCC
Confidence 2345667899999999999998632 345899999999999999865 45778889999999999999
Q ss_pred eEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCC---cccCCCCcEEEEccccCCccceeeEEecCCeE
Q 048642 295 DVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELG---TVTNVSPWIITVGASTLDREFQNFVELRNGQR 371 (782)
Q Consensus 295 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~ 371 (782)
+|||||||... .+..+.+...+.++.++|+++|+||||+|.... ..+...+++|+||+++
T Consensus 126 ~iIn~S~g~~~-~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~---------------- 188 (312)
T cd07489 126 DVITASLGGPS-GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD---------------- 188 (312)
T ss_pred CEEEeCCCcCC-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec----------------
Confidence 99999999873 344577777888899999999999999986532 2234568888888621
Q ss_pred EeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEec
Q 048642 372 FKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCN 451 (782)
Q Consensus 372 ~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n 451 (782)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeC
Q 048642 452 DKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAP 531 (782)
Q Consensus 452 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 531 (782)
+.||+|||+. +...||||+||
T Consensus 189 ---------------------------------------------------------~~~s~~g~~~--~~~~kpdv~Ap 209 (312)
T cd07489 189 ---------------------------------------------------------SYFSSWGPTN--ELYLKPDVAAP 209 (312)
T ss_pred ---------------------------------------------------------CCccCCCCCC--CCCcCccEEcC
Confidence 4689999987 78899999999
Q ss_pred CceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhC-CCCCHHHHHHHHHhccccccCCCCCCCCC
Q 048642 532 GVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH-PDWSPSAIRSAIMTTARTRDNTANPMRDG 610 (782)
Q Consensus 532 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-p~~sp~~ik~~L~~TA~~~~~~g~~~~~~ 610 (782)
|++|+++++.... .|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++.........
T Consensus 210 G~~i~~~~~~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~- 277 (312)
T cd07489 210 GGNILSTYPLAGG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL- 277 (312)
T ss_pred CCCEEEeeeCCCC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc-
Confidence 9999999887521 68999999999999999999999999 9999999999999999987543211100
Q ss_pred CCCCCCCCcccccccCccccCCCCc
Q 048642 611 SFKKATPFSYGSGHIRPNRAMDPGL 635 (782)
Q Consensus 611 ~~~~~~~~~~G~G~vd~~~A~~~~l 635 (782)
..+++...+|+|+||+.+|++..-
T Consensus 278 -~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 278 -PDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred -cCCCCHhhcCcceeeHHHHhcCCc
Confidence 114667899999999999999644
No 8
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=3.4e-47 Score=425.51 Aligned_cols=408 Identities=23% Similarity=0.265 Sum_probs=239.9
Q ss_pred CCCCceEEEEecCCcCcCCCCccC-CCCCCCCCCccccccCCCCCcccccccccccccchh-hHhhhcccccccccCCCC
Q 048642 143 RFGEDIIIANLDTGVWPESKSFSD-EGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNR-AYAAYVKQHNISVNFNNT 220 (782)
Q Consensus 143 ~~G~gV~VaVIDtGid~~Hp~f~~-~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~-~~~~~~~~~~~~~~~~~~ 220 (782)
.+|+||+|||||||||+.||+|++ ++.+++...|++....+... ....+...+.. ..+......++. +...
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~p~--~~~~ 73 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPP-----GGYYGGGEYTEEIINAALASDNPY--DIVP 73 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCC-----ccccCceEEeHHHHHHHHhcCCcc--ccCc
Confidence 379999999999999999999986 56789999999876654320 11111111111 111110000100 2345
Q ss_pred CCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCC-------CCCChhHHHHHHHHhhhC-
Q 048642 221 ARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSD-------GQCFDADILKGFDMAIHD- 292 (782)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~-------g~~~~~~i~~ai~~a~~~- 292 (782)
..|..||||||||||||+..+ +..+.||||+|+|+++|++...... ..+...++++||+|+++.
T Consensus 74 ~~D~~GHGThvAGIiag~~~~--------~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a 145 (455)
T cd07478 74 SRDENGHGTHVAGIAAGNGDN--------NPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKA 145 (455)
T ss_pred CCCCCCchHHHHHHHhcCCCC--------CCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHH
Confidence 678999999999999998532 3456899999999999999876210 016788999999999874
Q ss_pred ----CCeEEEEccCCC-CCCCCCCHHHHHHHHHHhc-CcEEEEecCCCCCCCCcccCC-----CC--cEEEEccccCCcc
Q 048642 293 ----GVDVISVSLGGD-PADYFNDGTAIGAFHAVKH-GIVVVCSAANSGPELGTVTNV-----SP--WIITVGASTLDRE 359 (782)
Q Consensus 293 ----g~dVIn~SlG~~-~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~-----~p--~vitVgas~~~~~ 359 (782)
.+.|||||||.. ..+...++++.++..+..+ |++||+||||+|......... .. --+.|+... ..
T Consensus 146 ~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~--~~ 223 (455)
T cd07478 146 LELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE--KG 223 (455)
T ss_pred HHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC--cc
Confidence 478999999987 3455677888888887766 999999999999654333321 00 012233211 11
Q ss_pred ceeeEEe--cCCeEEe-----eeeccCCCCC---CcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCC
Q 048642 360 FQNFVEL--RNGQRFK-----GTSLSKSLPN---DTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGD 429 (782)
Q Consensus 360 ~~~~~~~--~~~~~~~-----g~~~~~~~~~---~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~ 429 (782)
+.-.+-. .+...+. |+....-... ...+.+.... ...|... ..+....|.-.+.-+
T Consensus 224 ~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~-----------t~i~v~y-~~~~~~~g~~~i~i~-- 289 (455)
T cd07478 224 FNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEG-----------TTVYVYY-YLPEPYTGDQLIFIR-- 289 (455)
T ss_pred eEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECC-----------eEEEEEE-cCCCCCCCCeEEEEE--
Confidence 1000000 0000000 0000000000 0000000000 0000000 001111111111111
Q ss_pred cchhhhhHHHHHcCceEEEEeccCC-CCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCee------eccC
Q 048642 430 TARVDKGRQAAVAGAVGMILCNDKS-SGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPST------YLNA 502 (782)
Q Consensus 430 ~~~~~~~~~~~~~Ga~g~i~~n~~~-~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~------~~~~ 502 (782)
.. -...|-..+.++.... .+. ...|+|.-.+...+..++ +.. +..++..+.. +...
T Consensus 290 ------~~-~~~~GiW~i~~~~~~~~~g~----~~~Wlp~~~~~~~~t~f~----~~~--~~~tit~Pa~~~~vitVga~ 352 (455)
T cd07478 290 ------FK-NIKPGIWKIRLTGVSITDGR----FDAWLPSRGLLSENTRFL----EPD--PYTTLTIPGTARSVITVGAY 352 (455)
T ss_pred ------cc-CCCccceEEEEEeccCCCce----EEEEecCcCcCCCCCEee----cCC--CCceEecCCCCCCcEEEEEE
Confidence 11 1233555555554322 111 123444333322222111 122 2223332211 1112
Q ss_pred C-CCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhC
Q 048642 503 K-PSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH 581 (782)
Q Consensus 503 ~-~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~ 581 (782)
. ..+.++.||||||+. ++++||||+|||++|+++.+.+ .|..++|||||||||||++|||+|++
T Consensus 353 ~~~~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~ 417 (455)
T cd07478 353 NQNNNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWG 417 (455)
T ss_pred eCCCCcccCccCCCcCC--CCCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhc
Confidence 2 235699999999998 8999999999999999999864 89999999999999999999999975
Q ss_pred ------CCCCHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCccccc
Q 048642 582 ------PDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSG 623 (782)
Q Consensus 582 ------p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 623 (782)
|.+++++||++|++||+++.. ..+++++||||
T Consensus 418 ~~~~~~p~~~~~~ik~~L~~tA~~~~~----------~~~pn~~~GyG 455 (455)
T cd07478 418 IVRGNDPYLYGEKIKTYLIRGARRRPG----------DEYPNPEWGYG 455 (455)
T ss_pred hhccCCCCCCHHHHHHHHHHhCccCCC----------CCCCCCCCCCC
Confidence 567999999999999998742 24678899998
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=1.9e-46 Score=392.85 Aligned_cols=249 Identities=26% Similarity=0.291 Sum_probs=203.5
Q ss_pred ccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccC
Q 048642 138 AWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNF 217 (782)
Q Consensus 138 ~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~ 217 (782)
+|..+.+|+||+|||||+|||++||+|++..+.+ ...+.. .
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~-------------------------~~~~~~--------------~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTP-------------------------LFTYAA--------------A 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCcccc-------------------------ccCccc--------------c
Confidence 7999999999999999999999999998642111 001100 1
Q ss_pred CCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEE
Q 048642 218 NNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVI 297 (782)
Q Consensus 218 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVI 297 (782)
.....|..+|||||||||+|+. ...+.||||+|+|+.+|++.... +.++..++++||+||+++|++||
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~----------~~~~~GvAp~a~i~~~~v~~~~~--~~~~~~~i~~ai~~a~~~g~~VI 110 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQP----------CSSVEGIAPLCRGLNIPIFAEDR--RGCSQLDLARAINLALEQGAHII 110 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCC----------CCCceeECcCCeEEEEEEEeCCC--CCCCHHHHHHHHHHHHHCCCCEE
Confidence 2244577899999999999874 22468999999999999987652 13456789999999999999999
Q ss_pred EEccCCCC-CCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCCeEEeeee
Q 048642 298 SVSLGGDP-ADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTS 376 (782)
Q Consensus 298 n~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~ 376 (782)
|||||... .......+..++.+|.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 111 N~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------- 171 (267)
T cd07476 111 NISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD------------------- 171 (267)
T ss_pred EecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC-------------------
Confidence 99999763 2234556788888899999999999999997766667778999999985421
Q ss_pred ccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCC
Q 048642 377 LSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSG 456 (782)
Q Consensus 377 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 456 (782)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEE
Q 048642 457 NEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNII 536 (782)
Q Consensus 457 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~ 536 (782)
+.++.||+||+.. .||||+|||.+|+
T Consensus 172 -------------------------------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~ 197 (267)
T cd07476 172 -------------------------------------------------GLPLKFSNWGADY-----RKKGILAPGENIL 197 (267)
T ss_pred -------------------------------------------------CCeeeecCCCCCC-----CCceEEecCCCce
Confidence 3557899999754 3889999999999
Q ss_pred EeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCC----CCHHHHHHHHHhccccccCC
Q 048642 537 AAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPD----WSPSAIRSAIMTTARTRDNT 603 (782)
Q Consensus 537 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~----~sp~~ik~~L~~TA~~~~~~ 603 (782)
++.+.+ .|..++|||||||||||++|||+|++|. ++|++||++|++||+++...
T Consensus 198 ~~~~~~-------------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 198 GAALGG-------------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred eecCCC-------------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 998764 8899999999999999999999999887 89999999999999998543
No 10
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7e-46 Score=383.37 Aligned_cols=238 Identities=26% Similarity=0.368 Sum_probs=193.9
Q ss_pred eEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCCc
Q 048642 148 IIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGH 227 (782)
Q Consensus 148 V~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 227 (782)
|+|||||||||++||+|++. ++..+++. .....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~--------------------------~~~~~~~~----------------~~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAV--------------------------VIARLFFA----------------GPGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccC--------------------------ccccccCC----------------CCCCCCCCCC
Confidence 78999999999999999753 11111111 1135577899
Q ss_pred cchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCCCCCC
Q 048642 228 GTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPAD 307 (782)
Q Consensus 228 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 307 (782)
||||||||+|...+ . .||||+|+|+.+|++......+.++..++++||+||++.|++|||||||...
T Consensus 39 GT~vAgiia~~~~~---------~--~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-- 105 (239)
T cd05561 39 GTAVASLLAGAGAQ---------R--PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-- 105 (239)
T ss_pred HHHHHHHHhCCCCC---------C--cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--
Confidence 99999999998521 1 7999999999999988653222467888999999999999999999999752
Q ss_pred CCCCHHHHHHHHHHhcCcEEEEecCCCCCCC-CcccCCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCCcc
Q 048642 308 YFNDGTAIGAFHAVKHGIVVVCSAANSGPEL-GTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTF 386 (782)
Q Consensus 308 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 386 (782)
...+..++.++.++|++||+||||+|+.. ..++...+++|+||+++.
T Consensus 106 --~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~------------------------------ 153 (239)
T cd05561 106 --NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA------------------------------ 153 (239)
T ss_pred --CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC------------------------------
Confidence 34677788889999999999999999753 345556789999997542
Q ss_pred cceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCCcc
Q 048642 387 YPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFL 466 (782)
Q Consensus 387 ~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ 466 (782)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCC
Q 048642 467 PASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGAT 546 (782)
Q Consensus 467 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 546 (782)
.+.++.||++|+.. ||.|||.+|+++.+.+
T Consensus 154 --------------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~---- 183 (239)
T cd05561 154 --------------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPGG---- 183 (239)
T ss_pred --------------------------------------CCCccccCCCCCcc--------eEEccccceecccCCC----
Confidence 13567899999976 9999999999977653
Q ss_pred CCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCccccc
Q 048642 547 ELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSYGSG 623 (782)
Q Consensus 547 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G 623 (782)
.|..++|||||||||||++|||+|++| ++++|||++|++||+++... ..+..||||
T Consensus 184 ---------~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~-----------~~d~~~G~G 239 (239)
T cd05561 184 ---------GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPP-----------GRDPVFGYG 239 (239)
T ss_pred ---------CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCC-----------CcCCCcCCC
Confidence 899999999999999999999999999 99999999999999987543 346789998
No 11
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-45 Score=394.33 Aligned_cols=291 Identities=38% Similarity=0.518 Sum_probs=216.8
Q ss_pred CCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccc-cccccCCCCCCC
Q 048642 145 GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQH-NISVNFNNTARD 223 (782)
Q Consensus 145 G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~-~~~~~~~~~~~d 223 (782)
|+||+|||||+|||++||+|.+.. ..+.++...++|........... ...........|
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG--------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGD 60 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC--------------------CCCCceeeeeECccCCCCcccccccccccccCCCCC
Confidence 899999999999999999998541 12233333333332110000000 000000123456
Q ss_pred CCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCC
Q 048642 224 HEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGG 303 (782)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~ 303 (782)
..+|||||||+|+|...+ ...+.||||+|+|+.+|++... +.+...++++||+++++++++|||||||.
T Consensus 61 ~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~~~---~~~~~~~~~~ai~~a~~~~~~Iin~S~g~ 129 (295)
T cd07474 61 ATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLGPG---GSGTTDVIIAAIEQAVDDGMDVINLSLGS 129 (295)
T ss_pred CCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeecCC---CCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 899999999999998532 3455899999999999999754 36788999999999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcc--cCCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCC
Q 048642 304 DPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTV--TNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSL 381 (782)
Q Consensus 304 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~ 381 (782)
... ...+.+..++.++.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 130 ~~~-~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~---------------------- 186 (295)
T cd07474 130 SVN-GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV---------------------- 186 (295)
T ss_pred CCC-CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc----------------------
Confidence 732 2456788888899999999999999998665544 345789999998541100
Q ss_pred CCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCcccc
Q 048642 382 PNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITA 461 (782)
Q Consensus 382 ~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 461 (782)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCC-CCCCCCCCCcCCeEEeCCceEEEeec
Q 048642 462 DPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSA-GPNKITPEILKPDITAPGVNIIAAFT 540 (782)
Q Consensus 462 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~-Gp~~~~~~~~KPDI~APG~~I~sa~~ 540 (782)
........|+++ |+.. ...+||||+|||++|++++.
T Consensus 187 -----------------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~ 223 (295)
T cd07474 187 -----------------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAP 223 (295)
T ss_pred -----------------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeecc
Confidence 001233445555 4544 78899999999999999987
Q ss_pred CCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCcc
Q 048642 541 GAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSY 620 (782)
Q Consensus 541 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 620 (782)
.. ...|..++|||||||+|||++|||+|++|.|++++||++|++||++....+. ..+++..+
T Consensus 224 ~~-----------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-------~~~~~~~~ 285 (295)
T cd07474 224 GS-----------GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-------VVYPVSRQ 285 (295)
T ss_pred CC-----------CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-------CcCChhcc
Confidence 63 1278999999999999999999999999999999999999999998765432 12356789
Q ss_pred cccccCcccc
Q 048642 621 GSGHIRPNRA 630 (782)
Q Consensus 621 G~G~vd~~~A 630 (782)
|+|+||+.+|
T Consensus 286 G~G~l~~~~A 295 (295)
T cd07474 286 GAGRVDALRA 295 (295)
T ss_pred CcceeccccC
Confidence 9999999987
No 12
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=6.2e-45 Score=387.50 Aligned_cols=267 Identities=22% Similarity=0.308 Sum_probs=190.3
Q ss_pred CceEEEEecCCcCcCCCCccCCCCCCCCCCccccccC---CCC-CcccccccccccccchhhHhhh----ccccccc---
Q 048642 146 EDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQN---STK-EGVRCNRKLIGARYFNRAYAAY----VKQHNIS--- 214 (782)
Q Consensus 146 ~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~---~~~-~~~~~~~ki~g~~~~~~~~~~~----~~~~~~~--- 214 (782)
|+|+|||||||||++||+|++. .|.+..+. +.+ +....-+++ ++++|...+... ..+.+..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd~-~g~~f~~~~~~~~~~~~~~~~~~~~~ 72 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDDV-NGWNFLGQYDPRRIVGDDPYDLTEKG 72 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCccccc-cCeeccCCcccccccccCcccccccc
Confidence 6899999999999999999865 34332221 111 111111122 233333211100 0000000
Q ss_pred --ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhC
Q 048642 215 --VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD 292 (782)
Q Consensus 215 --~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~ 292 (782)
.++...+.+..+|||||||||+|...+ ...+.||||+|+|+.+|++... .....++++||+||++.
T Consensus 73 ~g~~~~~~~~~~~gHGT~VAGiIaa~~~n--------~~g~~GvAp~a~i~~~k~~~~g----~~~~~~i~~Ai~~a~~~ 140 (291)
T cd07483 73 YGNNDVNGPISDADHGTHVAGIIAAVRDN--------GIGIDGVADNVKIMPLRIVPNG----DERDKDIANAIRYAVDN 140 (291)
T ss_pred ccccccCCCCCCCCcHHHHHHHHhCcCCC--------CCceEEECCCCEEEEEEEecCC----CcCHHHHHHHHHHHHHC
Confidence 001234557899999999999998532 2235899999999999998543 46778899999999999
Q ss_pred CCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCc---cc--------CCCCcEEEEccccCCccce
Q 048642 293 GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGT---VT--------NVSPWIITVGASTLDREFQ 361 (782)
Q Consensus 293 g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~~p~vitVgas~~~~~~~ 361 (782)
|++|||||||.... .....+..++..+.++|+++|+||||+|..... ++ ...+++|+|||++...
T Consensus 141 g~~IiN~S~G~~~~-~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~--- 216 (291)
T cd07483 141 GAKVINMSFGKSFS-PNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY--- 216 (291)
T ss_pred CCcEEEeCCCCCCC-CccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC---
Confidence 99999999997632 223456677778899999999999999854211 11 1235677777643221
Q ss_pred eeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHH
Q 048642 362 NFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAV 441 (782)
Q Consensus 362 ~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~ 441 (782)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCC
Q 048642 442 AGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITP 521 (782)
Q Consensus 442 ~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~ 521 (782)
....++.||++|+.
T Consensus 217 --------------------------------------------------------------~~~~~~~~Sn~G~~---- 230 (291)
T cd07483 217 --------------------------------------------------------------ENNLVANFSNYGKK---- 230 (291)
T ss_pred --------------------------------------------------------------CcccccccCCCCCC----
Confidence 01257889999974
Q ss_pred CCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 048642 522 EILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTAR 598 (782)
Q Consensus 522 ~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 598 (782)
+|||.|||.+|+++.+.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 231 ---~vdi~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 231 ---NVDVFAPGERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred ---ceEEEeCCCCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 359999999999998764 8999999999999999999999999999999999999999984
No 13
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-44 Score=380.38 Aligned_cols=245 Identities=30% Similarity=0.369 Sum_probs=194.9
Q ss_pred ceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCC-CCCCC
Q 048642 147 DIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNT-ARDHE 225 (782)
Q Consensus 147 gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~ 225 (782)
||+|||||||||++||+|.... ...+.++.+.++|.+. ... ..|..
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~-------------------~~~~~~i~~~~~~~~~--------------~~~~~~~~~ 47 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH-------------------LFKNLRILGEYDFVDN--------------SNNTNYTDD 47 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc-------------------cccCCceeeeecCccC--------------CCCCCCCCC
Confidence 7999999999999999994220 1123445555555432 112 36788
Q ss_pred CccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCCCC
Q 048642 226 GHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDP 305 (782)
Q Consensus 226 gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 305 (782)
+|||||||||+|+. .+.+.||||+|+|+.+|+...... .......++.|++++.+.+++|||||||...
T Consensus 48 ~HGT~vagiia~~~----------~~~~~GvAp~a~l~~~~~~~~~~~-~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~ 116 (261)
T cd07493 48 DHGTAVLSTMAGYT----------PGVMVGTAPNASYYLARTEDVASE-TPVEEDNWVAAAEWADSLGVDIISSSLGYTT 116 (261)
T ss_pred CchhhhheeeeeCC----------CCCEEEeCCCCEEEEEEecccCCc-ccccHHHHHHHHHHHHHcCCCEEEeCCCcCC
Confidence 99999999999984 234689999999999998754321 1345667899999999999999999999873
Q ss_pred CCCC------------CCHHHHHHHHHHhcCcEEEEecCCCCCCC---CcccCCCCcEEEEccccCCccceeeEEecCCe
Q 048642 306 ADYF------------NDGTAIGAFHAVKHGIVVVCSAANSGPEL---GTVTNVSPWIITVGASTLDREFQNFVELRNGQ 370 (782)
Q Consensus 306 ~~~~------------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~ 370 (782)
.... ...+..++..+.++|+++|+||||+|... ...+...+++|+|||.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~-------------- 182 (261)
T cd07493 117 FDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA-------------- 182 (261)
T ss_pred CCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc--------------
Confidence 2111 23567788889999999999999999763 344556789999998432
Q ss_pred EEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEe
Q 048642 371 RFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILC 450 (782)
Q Consensus 371 ~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~ 450 (782)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEe
Q 048642 451 NDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITA 530 (782)
Q Consensus 451 n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~A 530 (782)
.+.++.||++||+. ++++||||+|
T Consensus 183 ------------------------------------------------------~~~~~~~S~~G~~~--~~~~~pdi~a 206 (261)
T cd07493 183 ------------------------------------------------------NGNKASFSSIGPTA--DGRLKPDVMA 206 (261)
T ss_pred ------------------------------------------------------CCCCCccCCcCCCC--CCCcCCceEe
Confidence 13678899999987 8899999999
Q ss_pred CCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 048642 531 PGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTAR 598 (782)
Q Consensus 531 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 598 (782)
||.+|++..... .|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 207 ~G~~~~~~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 207 LGTGIYVINGDG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred cCCCeEEEcCCC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999855432 7899999999999999999999999999999999999999984
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=1.7e-44 Score=379.90 Aligned_cols=247 Identities=35% Similarity=0.417 Sum_probs=194.6
Q ss_pred CCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCC
Q 048642 145 GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDH 224 (782)
Q Consensus 145 G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 224 (782)
|+||+|||||+|||++||+|.+. |.+... .++...+.+.+. .. ....+.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~----------~~~~~~~~~~d~----------~~-~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGG----------GSADHDYNWFDP----------VG-NTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCC----------CCcccccccccC----------CC-CCCCCCCC
Confidence 89999999999999999999864 111000 000000001000 00 23356688
Q ss_pred CCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhh------------C
Q 048642 225 EGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIH------------D 292 (782)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~------------~ 292 (782)
.+|||||||||+|... .+...||||+|+|+.+|++... .+...+++++++++++ .
T Consensus 52 ~~HGT~vagii~g~~~---------~~~~~GvAp~a~i~~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 118 (264)
T cd07481 52 NGHGTHTMGTMVGNDG---------DGQQIGVAPGARWIACRALDRN----GGNDADYLRCAQWMLAPTDSAGNPADPDL 118 (264)
T ss_pred CCchhhhhhheeecCC---------CCCceEECCCCeEEEEEeecCC----CCcHHHHHHHHHHHHhccccccccccccc
Confidence 8999999999998742 2223899999999999999876 4778899999999975 7
Q ss_pred CCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCc---ccCCCCcEEEEccccCCccceeeEEecCC
Q 048642 293 GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGT---VTNVSPWIITVGASTLDREFQNFVELRNG 369 (782)
Q Consensus 293 g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVgas~~~~~~~~~~~~~~~ 369 (782)
+++|||||||.... ....+..++..+.++|++||+||||++..... .+...+++|+||+++.
T Consensus 119 ~~~Iin~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~------------- 183 (264)
T cd07481 119 APDVINNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR------------- 183 (264)
T ss_pred CCeEEEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC-------------
Confidence 89999999998732 24456666677889999999999999865433 3456789999998542
Q ss_pred eEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEE
Q 048642 370 QRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMIL 449 (782)
Q Consensus 370 ~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~ 449 (782)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEE
Q 048642 450 CNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDIT 529 (782)
Q Consensus 450 ~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~ 529 (782)
.+.++.||++||.. .+++||||+
T Consensus 184 -------------------------------------------------------~~~~~~~S~~g~~~--~~~~~~dv~ 206 (264)
T cd07481 184 -------------------------------------------------------NDVLADFSSRGPST--YGRIKPDIS 206 (264)
T ss_pred -------------------------------------------------------CCCCccccCCCCCC--CCCcCceEE
Confidence 24678999999987 789999999
Q ss_pred eCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 048642 530 APGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPD--WSPSAIRSAIMTTAR 598 (782)
Q Consensus 530 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~--~sp~~ik~~L~~TA~ 598 (782)
|||.+|+++.+.+ .|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 207 ApG~~i~s~~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 207 APGVNIRSAVPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred ECCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 9999999998764 8899999999999999999999999999 999999999999985
No 15
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-45 Score=376.83 Aligned_cols=332 Identities=25% Similarity=0.350 Sum_probs=258.2
Q ss_pred CCCCeEEEEeCCCCCCCCccccccccchhhHHHHHHHhhCCccccc--c----------------cEeEEec---cceee
Q 048642 28 AIKQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEKAR--D----------------AIFYSYQ---NHING 86 (782)
Q Consensus 28 ~~~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~----------------~i~~~y~---~~~ng 86 (782)
..+.+|||.|++... .+....|.++++...+...... . .+.+.|. .+|+|
T Consensus 78 ~~~~~YiV~f~~~~~---------q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~ 148 (501)
T KOG1153|consen 78 ALPSRYIVVFKPDAS---------QQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRG 148 (501)
T ss_pred ccccceEEEeCCCcc---------HHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhc
Confidence 345789999996655 3667778888877654221100 0 1334443 37889
Q ss_pred EEEEcCHHHHHHHhCCCCeEEEEecccccccc-----cccccccccccCCccc-------CCCccccCCCCCceEEEEec
Q 048642 87 FAATLEEEEAAEIAKHPDVVSIFPNKGKKLHT-----TRSWDFMLLENNGVIH-------SSSAWGKGRFGEDIIIANLD 154 (782)
Q Consensus 87 ~s~~~~~~~~~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~~~~~-------~~~~w~~~~~G~gV~VaVID 154 (782)
+....+.+-+..++++|-++.++++..++... .+....|||..+.+.. ...+++ -..|+||...|+|
T Consensus 149 y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~-~~aG~gvtaYv~D 227 (501)
T KOG1153|consen 149 YTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYE-IDAGKGVTAYVLD 227 (501)
T ss_pred cccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEee-cccCCCeEEEEec
Confidence 99999999999999999999999988776543 2233334555444332 111222 2389999999999
Q ss_pred CCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCCccchhhhh
Q 048642 155 TGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHGTHTLST 234 (782)
Q Consensus 155 tGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGi 234 (782)
|||+.+||+|.++ +.| |.| +. ......|++||||||||+
T Consensus 228 TGVni~H~dFegR------a~w-Ga~-------------------i~---------------~~~~~~D~nGHGTH~AG~ 266 (501)
T KOG1153|consen 228 TGVNIEHPDFEGR------AIW-GAT-------------------IP---------------PKDGDEDCNGHGTHVAGL 266 (501)
T ss_pred ccccccccccccc------eec-ccc-------------------cC---------------CCCcccccCCCcceeeee
Confidence 9999999999876 333 111 00 122456899999999999
Q ss_pred hhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhC---------CCeEEEEccCCCC
Q 048642 235 AGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD---------GVDVISVSLGGDP 305 (782)
Q Consensus 235 iag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~---------g~dVIn~SlG~~~ 305 (782)
|++.. .|||.+++|+++||++++ |.+..+++++++|++++. +..|.|||+|+..
T Consensus 267 I~sKt--------------~GvAK~s~lvaVKVl~~d---GsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~ 329 (501)
T KOG1153|consen 267 IGSKT--------------FGVAKNSNLVAVKVLRSD---GSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR 329 (501)
T ss_pred eeccc--------------cccccccceEEEEEeccC---CcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc
Confidence 99986 688999999999999999 789999999999999986 5799999999973
Q ss_pred CCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccC-CCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCC
Q 048642 306 ADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTN-VSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPND 384 (782)
Q Consensus 306 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~-~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 384 (782)
.-++..|+++|.+.|+++++||||+..+.+..++ .+..+|||||++..
T Consensus 330 ----S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~~--------------------------- 378 (501)
T KOG1153|consen 330 ----SAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTKN--------------------------- 378 (501)
T ss_pred ----cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEecccccc---------------------------
Confidence 4467788889999999999999999977665554 68899999997532
Q ss_pred cccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCC
Q 048642 385 TFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPH 464 (782)
Q Consensus 385 ~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 464 (782)
T Consensus 379 -------------------------------------------------------------------------------- 378 (501)
T KOG1153|consen 379 -------------------------------------------------------------------------------- 378 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCC
Q 048642 465 FLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIG 544 (782)
Q Consensus 465 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~ 544 (782)
+.+|.||+||+|+ ||.|||++|+|+|.+...
T Consensus 379 -----------------------------------------D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~ 409 (501)
T KOG1153|consen 379 -----------------------------------------DTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN 409 (501)
T ss_pred -----------------------------------------cchhhhcCcccee--------eeecCchhhhhhhhcCcc
Confidence 5899999999999 999999999999998633
Q ss_pred CCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCC---------CCHHHHHHHHHhccc
Q 048642 545 ATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPD---------WSPSAIRSAIMTTAR 598 (782)
Q Consensus 545 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~---------~sp~~ik~~L~~TA~ 598 (782)
....+||||||+|||||++|..++++|. .+|.++|..++.-..
T Consensus 410 -----------at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 410 -----------ATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred -----------chheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 6678999999999999999999999883 378888887776544
No 16
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=5.1e-44 Score=378.23 Aligned_cols=264 Identities=28% Similarity=0.357 Sum_probs=201.9
Q ss_pred CccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccccc
Q 048642 137 SAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVN 216 (782)
Q Consensus 137 ~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~ 216 (782)
++|..+.+|+||+|||||||||++||+|.+.... .+...+...+.......+
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~---- 52 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDG------------------------DGYDPAVNGYNFVPNVGD---- 52 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCC------------------------CCcccccCCcccccccCC----
Confidence 4799999999999999999999999999865100 000011111100000000
Q ss_pred CCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeE
Q 048642 217 FNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDV 296 (782)
Q Consensus 217 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dV 296 (782)
......|..||||||||||+|...+.....|. ....|+||+|+|+.+|++... +.+....++++|+++++.|++|
T Consensus 53 ~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i--~~~~gvap~a~l~~~~v~~~~---~~~~~~~~~~ai~~a~~~g~~V 127 (273)
T cd07485 53 IDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGI--AGAGGVAPGVKIMSIQIFAGR---YYVGDDAVAAAIVYAADNGAVI 127 (273)
T ss_pred cCCCCCCCCCCHHHHHHHHHcccCCCcceecc--ccccccCCCCEEEEEEEECCC---CCccHHHHHHHHHHHHHcCCcE
Confidence 12345578899999999999975332211111 134679999999999999876 3678889999999999999999
Q ss_pred EEEccCCCCCCCCCCHHHHHHHHHHhc-------CcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCC
Q 048642 297 ISVSLGGDPADYFNDGTAIGAFHAVKH-------GIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNG 369 (782)
Q Consensus 297 In~SlG~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~ 369 (782)
||||||......+...+..++..+.++ |++||+||||++......+...+++|+||+++.+
T Consensus 128 in~S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------------ 195 (273)
T cd07485 128 LQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------------ 195 (273)
T ss_pred EEecCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC------------
Confidence 999999874334555677777788877 9999999999998766666678999999985421
Q ss_pred eEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEE
Q 048642 370 QRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMIL 449 (782)
Q Consensus 370 ~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~ 449 (782)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEE
Q 048642 450 CNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDIT 529 (782)
Q Consensus 450 ~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~ 529 (782)
+.++.||++|+.. ||.
T Consensus 196 --------------------------------------------------------~~~~~~S~~g~~~--------~i~ 211 (273)
T cd07485 196 --------------------------------------------------------DNKASFSNYGRWV--------DIA 211 (273)
T ss_pred --------------------------------------------------------CCcCccccCCCce--------EEE
Confidence 3667899999987 999
Q ss_pred eCCc-eEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 048642 530 APGV-NIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPD-WSPSAIRSAIMTT 596 (782)
Q Consensus 530 APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~-~sp~~ik~~L~~T 596 (782)
|||. .|+++.+.... .....|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 212 apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 212 APGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred eCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999 89888765321 11237899999999999999999999999999 9999999999986
No 17
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=1.2e-43 Score=384.49 Aligned_cols=223 Identities=27% Similarity=0.340 Sum_probs=167.5
Q ss_pred CCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEcc
Q 048642 222 RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSL 301 (782)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~Sl 301 (782)
.|+.+|||||||||||+.. +...+.||||+|+|+.+|+++.... ..+....+++||++|++.|++||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~--------~~~~~~GVAP~A~I~svkv~d~~~g-s~~t~~~l~~ai~~ai~~gadVIN~Sl 252 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFP--------EEPERNGVAPGAQIVSIKIGDTRLG-SMETGTALVRAMIAAIETKCDLINMSY 252 (412)
T ss_pred CCCCCCHHHHHHHHhCCCC--------CCCceEEecCCCeEEEEEeccCCCC-CccchHHHHHHHHHHHHcCCCEEEecC
Confidence 4788999999999999842 2345689999999999999865421 012345799999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHH-HHhcCcEEEEecCCCCCCCCcccC---CCCcEEEEccccCCccceeeEEecCCeEEeeeec
Q 048642 302 GGDPADYFNDGTAIGAFH-AVKHGIVVVCSAANSGPELGTVTN---VSPWIITVGASTLDREFQNFVELRNGQRFKGTSL 377 (782)
Q Consensus 302 G~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~~~---~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~ 377 (782)
|..........+..++.+ +.++|+++|+||||+|+...++.. ..+++|+|||..........
T Consensus 253 G~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~-------------- 318 (412)
T cd04857 253 GEATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE-------------- 318 (412)
T ss_pred CcCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc--------------
Confidence 987331122233334443 457999999999999987776553 35799999985432110000
Q ss_pred cCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCC
Q 048642 378 SKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGN 457 (782)
Q Consensus 378 ~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~ 457 (782)
|.+
T Consensus 319 ---------y~~-------------------------------------------------------------------- 321 (412)
T cd04857 319 ---------YSL-------------------------------------------------------------------- 321 (412)
T ss_pred ---------ccc--------------------------------------------------------------------
Confidence 000
Q ss_pred ccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEE
Q 048642 458 EITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIA 537 (782)
Q Consensus 458 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s 537 (782)
.....+.++.||||||+. ++.+||||+|||+.|.+
T Consensus 322 -------------------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s 356 (412)
T cd04857 322 -------------------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIAS 356 (412)
T ss_pred -------------------------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEE
Confidence 001135689999999998 99999999999999987
Q ss_pred eecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccc
Q 048642 538 AFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKT----AHPDWSPSAIRSAIMTTARTR 600 (782)
Q Consensus 538 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~sp~~ik~~L~~TA~~~ 600 (782)
.-... ...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 357 ~p~~~-----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 357 VPNWT-----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred cccCC-----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 53221 12789999999999999999999985 478999999999999999864
No 18
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.5e-43 Score=371.78 Aligned_cols=257 Identities=34% Similarity=0.469 Sum_probs=204.9
Q ss_pred CCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCC
Q 048642 145 GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDH 224 (782)
Q Consensus 145 G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 224 (782)
|+||+|+|||+|||++||+|.+... ....+.... . ......|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~--------------------------~~~~~~~~~--~---------~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRII--------------------------RFADFVNTV--N---------GRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCcccccccc--------------------------ccccccccc--c---------CCCCCCCC
Confidence 8999999999999999999986411 111111000 0 23456678
Q ss_pred CCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhC----CCeEEEEc
Q 048642 225 EGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD----GVDVISVS 300 (782)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~----g~dVIn~S 300 (782)
.+|||||||+|+|...+. ...+.||||+|+|+.+|+++.. +.+...++++||+|+++. +++|||||
T Consensus 44 ~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~---~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S 113 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDS---GSGSESDIIAGIDWVVENNEKYNIRVVNLS 113 (264)
T ss_pred CCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCC---CCccHHHHHHHHHHHHhhccccCceEEEec
Confidence 899999999999985321 3446999999999999999876 467888999999999998 99999999
Q ss_pred cCCCCC-CCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCC--cccCCCCcEEEEccccCCccceeeEEecCCeEEeeeec
Q 048642 301 LGGDPA-DYFNDGTAIGAFHAVKHGIVVVCSAANSGPELG--TVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSL 377 (782)
Q Consensus 301 lG~~~~-~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~ 377 (782)
||.... ....+.+..++.++.++|++||+||||++.... ..+...+++|+|||++.+..
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------ 175 (264)
T cd07487 114 LGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------------ 175 (264)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC------------------
Confidence 998832 456678888899999999999999999997765 34446789999998654320
Q ss_pred cCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCC
Q 048642 378 SKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGN 457 (782)
Q Consensus 378 ~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~ 457 (782)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEE
Q 048642 458 EITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIA 537 (782)
Q Consensus 458 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s 537 (782)
....++.||++||+. ++++||||+|||.+|++
T Consensus 176 ----------------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~ 207 (264)
T cd07487 176 ----------------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVS 207 (264)
T ss_pred ----------------------------------------------CCccccccccCCCCC--CCCcCCCEEccccceEe
Confidence 002478899999988 89999999999999999
Q ss_pred eecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 048642 538 AFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTAR 598 (782)
Q Consensus 538 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 598 (782)
+.+.... ........|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 208 ~~~~~~~----~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 208 CRSPGGN----PGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ccccccc----cCCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 8664311 11122347899999999999999999999999999999999999999984
No 19
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=8.4e-43 Score=365.53 Aligned_cols=233 Identities=33% Similarity=0.471 Sum_probs=195.0
Q ss_pred ccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccC
Q 048642 138 AWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNF 217 (782)
Q Consensus 138 ~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~ 217 (782)
+|..+.+|+||+|||||+||+++||+|.++ +...+.+..
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~--------------------------~~~~~~~~~--------------- 55 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR--------------------------AIWGADFVG--------------- 55 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC--------------------------eeeeeecCC---------------
Confidence 777889999999999999999999999754 111222211
Q ss_pred CCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhC-----
Q 048642 218 NNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD----- 292 (782)
Q Consensus 218 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~----- 292 (782)
.....|..+|||||||||++.. .||||+|+|+.+|+++.. +....+.++++|+++++.
T Consensus 56 ~~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~---~~~~~~~~~~ai~~~~~~~~~~~ 118 (255)
T cd04077 56 GDPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCN---GSGTLSGIIAGLEWVANDATKRG 118 (255)
T ss_pred CCCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCC---CCcCHHHHHHHHHHHHhcccccC
Confidence 1125678899999999999874 689999999999999876 457788999999999987
Q ss_pred CCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCC-CcccCCCCcEEEEccccCCccceeeEEecCCeE
Q 048642 293 GVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPEL-GTVTNVSPWIITVGASTLDREFQNFVELRNGQR 371 (782)
Q Consensus 293 g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~ 371 (782)
+++|||||||... ...+..++.++.++|+++|+||||+|... ...+...+++|+||+++.+
T Consensus 119 ~~~iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~-------------- 180 (255)
T cd04077 119 KPAVANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD-------------- 180 (255)
T ss_pred CCeEEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC--------------
Confidence 4899999999873 45677778889999999999999999765 3444567899999985432
Q ss_pred EeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEec
Q 048642 372 FKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCN 451 (782)
Q Consensus 372 ~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n 451 (782)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeC
Q 048642 452 DKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAP 531 (782)
Q Consensus 452 ~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~AP 531 (782)
+.++.||++||.. ||+||
T Consensus 181 ------------------------------------------------------~~~~~~S~~g~~~--------~i~ap 198 (255)
T cd04077 181 ------------------------------------------------------DARASFSNYGSCV--------DIFAP 198 (255)
T ss_pred ------------------------------------------------------CCccCcccCCCCC--------cEEeC
Confidence 3578899999987 99999
Q ss_pred CceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 048642 532 GVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTART 599 (782)
Q Consensus 532 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~ 599 (782)
|.+|+++.... ...|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 199 G~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 199 GVDILSAWIGS-----------DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred CCCeEecccCC-----------CCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 99999988742 1288999999999999999999999999999999999999999974
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=2.2e-42 Score=363.49 Aligned_cols=242 Identities=34% Similarity=0.426 Sum_probs=203.2
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
...+|..+ +|+||+|||||+|||++||+|... ++...+++.+
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~-------------------------~~~~~~~~~~------------ 59 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV-------------------------KFVLGYDFVD------------ 59 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC-------------------------CcccceeccC------------
Confidence 56889988 999999999999999999998432 2222223321
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCC
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV 294 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~ 294 (782)
....+.|..+|||||||||++...+ ...+.|+||+|+|+.+|+++.. +.+...+++++|+++++.++
T Consensus 60 --~~~~~~d~~~HGT~vagii~~~~~~--------~~~~~Giap~a~l~~~~v~~~~---~~~~~~~~~~ai~~a~~~~~ 126 (260)
T cd07484 60 --NDSDAMDDNGHGTHVAGIIAAATNN--------GTGVAGVAPKAKIMPVKVLDAN---GSGSLADIANGIRYAADKGA 126 (260)
T ss_pred --CCCCCCCCCCcHHHHHHHHhCccCC--------CCceEeECCCCEEEEEEEECCC---CCcCHHHHHHHHHHHHHCCC
Confidence 1224567889999999999987422 2345899999999999999876 46788899999999999999
Q ss_pred eEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCCeEEee
Q 048642 295 DVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKG 374 (782)
Q Consensus 295 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g 374 (782)
+|||||||... ....+..++..+.++|++||+||||+|.....++...+++|+||+.+.+
T Consensus 127 ~iin~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~----------------- 186 (260)
T cd07484 127 KVINLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD----------------- 186 (260)
T ss_pred eEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC-----------------
Confidence 99999999873 4556777777888999999999999998877788888999999985421
Q ss_pred eeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCC
Q 048642 375 TSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 375 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCce
Q 048642 455 SGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVN 534 (782)
Q Consensus 455 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~ 534 (782)
+..+.||++|+.. |++|||.+
T Consensus 187 ---------------------------------------------------~~~~~~s~~g~~~--------~~~apG~~ 207 (260)
T cd07484 187 ---------------------------------------------------DKRASFSNYGKWV--------DVSAPGGG 207 (260)
T ss_pred ---------------------------------------------------CCcCCcCCCCCCc--------eEEeCCCC
Confidence 3567899999876 99999999
Q ss_pred EEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 048642 535 IIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTR 600 (782)
Q Consensus 535 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~ 600 (782)
|+++.+.. .|..++|||||||+|||++|||++++| +++++||++|++||+++
T Consensus 208 i~~~~~~~-------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 208 ILSTTPDG-------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred cEeecCCC-------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99987663 889999999999999999999999999 99999999999999875
No 21
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-42 Score=371.61 Aligned_cols=266 Identities=23% Similarity=0.228 Sum_probs=188.1
Q ss_pred EEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCCcc
Q 048642 149 IIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGHG 228 (782)
Q Consensus 149 ~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHG 228 (782)
+|||||||||.+||+|.+. +.....+.. ......|..|||
T Consensus 2 ~VaviDtGi~~~hp~l~~~--------------------------~~~~~~~~~--------------~~~~~~d~~gHG 41 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPA--------------------------LAEDDLDSD--------------EPGWTADDLGHG 41 (291)
T ss_pred EEEEecCCCCCCChhhhhh--------------------------hcccccccc--------------CCCCcCCCCCCh
Confidence 7999999999999999753 111111110 011156899999
Q ss_pred chhhhhhhccCCCCccccccCCCcceecCccccccccccccCCC-CCCCCChhHHHHHHHHhhhCC---CeEEEEccCCC
Q 048642 229 THTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQV-SDGQCFDADILKGFDMAIHDG---VDVISVSLGGD 304 (782)
Q Consensus 229 ThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~-~~g~~~~~~i~~ai~~a~~~g---~dVIn~SlG~~ 304 (782)
|||||||++.... .....|+||+|+|+.+|++...+ ..+.....++++||+|+++.+ ++|||||||..
T Consensus 42 T~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~ 113 (291)
T cd04847 42 TAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSP 113 (291)
T ss_pred HHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCC
Confidence 9999999976421 23458999999999999998762 112356778999999999853 59999999998
Q ss_pred CCCCC--CCHHHHHHHH-HHhcCcEEEEecCCCCCCCCcc------------cCCCCcEEEEccccCCccceeeEEecCC
Q 048642 305 PADYF--NDGTAIGAFH-AVKHGIVVVCSAANSGPELGTV------------TNVSPWIITVGASTLDREFQNFVELRNG 369 (782)
Q Consensus 305 ~~~~~--~~~~~~a~~~-a~~~Gi~vV~AAGN~g~~~~~~------------~~~~p~vitVgas~~~~~~~~~~~~~~~ 369 (782)
..... ...+..++.+ +.++|++||+||||++...... +..++++|+|||++...........
T Consensus 114 ~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~--- 190 (291)
T cd04847 114 LPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARY--- 190 (291)
T ss_pred CCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCcccc---
Confidence 32211 1245555543 5689999999999999765432 2346799999997654321000000
Q ss_pred eEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEE
Q 048642 370 QRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMIL 449 (782)
Q Consensus 370 ~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~ 449 (782)
T Consensus 191 -------------------------------------------------------------------------------- 190 (291)
T cd04847 191 -------------------------------------------------------------------------------- 190 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEE
Q 048642 450 CNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDIT 529 (782)
Q Consensus 450 ~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~ 529 (782)
+.......+.||+|||.. ++.+||||+
T Consensus 191 ---------------------------------------------------~~~~~~~~~~fs~~Gp~~--~~~~KPDl~ 217 (291)
T cd04847 191 ---------------------------------------------------SAVGPAPAGATTSSGPGS--PGPIKPDVV 217 (291)
T ss_pred ---------------------------------------------------cccccccCCCccccCCCC--CCCcCCcEE
Confidence 000011233499999988 899999999
Q ss_pred eCCceEEEeecCCCCC-----CCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 048642 530 APGVNIIAAFTGAIGA-----TELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTAR 598 (782)
Q Consensus 530 APG~~I~sa~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 598 (782)
|||++|.+..+..... ...........|..++|||||||||||++|||+|++|+++|++||++|++||+
T Consensus 218 apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 218 AFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred eeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9999998865431100 00001122348999999999999999999999999999999999999999984
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.5e-42 Score=360.83 Aligned_cols=253 Identities=33% Similarity=0.409 Sum_probs=188.0
Q ss_pred ceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCC
Q 048642 147 DIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEG 226 (782)
Q Consensus 147 gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 226 (782)
||+|||||+|||++||+|.+. +.....|..+.. . ......|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~--------------------------~~~~~~~~~~~~------~----~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR--------------------------VAQWADFDENRR------I----SATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc--------------------------cCCceeccCCCC------C----CCCCCCCCCC
Confidence 799999999999999999754 222222221100 0 2234567889
Q ss_pred ccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCCCCC
Q 048642 227 HGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPA 306 (782)
Q Consensus 227 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 306 (782)
|||||||||+|+.. ++...||||+|+|+.+|++... .+..++++++|+|+++.+++|||||||....
T Consensus 45 HGT~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~~~----~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~ 111 (254)
T cd07490 45 HGTHVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLDDG----GGSLSQIIAGMEWAVEKDADVVSMSLGGTYY 111 (254)
T ss_pred cHHHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEecCC----CCcHHHHHHHHHHHHhCCCCEEEECCCcCCC
Confidence 99999999999852 3345799999999999999876 3788999999999999999999999998743
Q ss_pred CCCCCHHHHHHHHHHh-cCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCCc
Q 048642 307 DYFNDGTAIGAFHAVK-HGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDT 385 (782)
Q Consensus 307 ~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 385 (782)
. .+.+..++....+ +|++||+||||+|......+...+++|+|||++.+.........
T Consensus 112 ~--~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~~------------------- 170 (254)
T cd07490 112 S--EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSSF------------------- 170 (254)
T ss_pred C--CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccCC-------------------
Confidence 2 5566655555554 69999999999998766666678999999997643210000000
Q ss_pred ccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCCc
Q 048642 386 FYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHF 465 (782)
Q Consensus 386 ~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~ 465 (782)
T Consensus 171 -------------------------------------------------------------------------------- 170 (254)
T cd07490 171 -------------------------------------------------------------------------------- 170 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCC
Q 048642 466 LPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGA 545 (782)
Q Consensus 466 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 545 (782)
.......++.+|.. .....||||+|||.+|+++....
T Consensus 171 ---------------------------------------g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~--- 207 (254)
T cd07490 171 ---------------------------------------GSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA--- 207 (254)
T ss_pred ---------------------------------------cccccccccCCCCC-ccCCcCceEEeccCCeEccccCC---
Confidence 00112222333432 25568999999999999865321
Q ss_pred CCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 048642 546 TELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTAR 598 (782)
Q Consensus 546 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 598 (782)
.....|..++|||||||+|||++|||+|++|++++.+||++|++||+
T Consensus 208 ------~~~~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 208 ------NGDGQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred ------CCCCCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 11237999999999999999999999999999999999999999984
No 23
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.3e-42 Score=365.40 Aligned_cols=252 Identities=29% Similarity=0.382 Sum_probs=183.4
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
+..+|+++.+|+||+||||||||+..|| |...++ .+ +. .+..+
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~-------~~--------------~~----~~~~~----------- 52 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGY-------QV--------------RV----VLAPG----------- 52 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCc-------cc--------------ee----ecCCC-----------
Confidence 5689999999999999999999999998 754311 00 00 00000
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCC
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV 294 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~ 294 (782)
......|+.||||||||++ .||||+|+|+.+|+++. ..+.+++||+||+++++
T Consensus 53 --~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~-------~~~~~~~ai~~a~~~g~ 105 (298)
T cd07494 53 --ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP-------DLVNSVGAFKKAISLSP 105 (298)
T ss_pred --CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC-------CcHHHHHHHHHHHhcCC
Confidence 1224567889999999865 47899999999999753 45678999999999999
Q ss_pred eEEEEccCCCCCCC----------CCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeE
Q 048642 295 DVISVSLGGDPADY----------FNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFV 364 (782)
Q Consensus 295 dVIn~SlG~~~~~~----------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~ 364 (782)
+|||||||...... ....+..++.+|.++|++||+||||++. .++...|++|+|||++.+..-
T Consensus 106 dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~g---- 178 (298)
T cd07494 106 DIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDEDG---- 178 (298)
T ss_pred CEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCCC----
Confidence 99999999862111 1235777888899999999999999974 457788999999996543200
Q ss_pred EecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCc
Q 048642 365 ELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGA 444 (782)
Q Consensus 365 ~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga 444 (782)
..
T Consensus 179 -----~~------------------------------------------------------------------------- 180 (298)
T cd07494 179 -----AR------------------------------------------------------------------------- 180 (298)
T ss_pred -----cc-------------------------------------------------------------------------
Confidence 00
Q ss_pred eEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCc
Q 048642 445 VGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEIL 524 (782)
Q Consensus 445 ~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~ 524 (782)
......+.|++ . ..+++.
T Consensus 181 ----------------------------------------------------------~~~~~~~~~~s---~-~~~g~~ 198 (298)
T cd07494 181 ----------------------------------------------------------RASSYASGFRS---K-IYPGRQ 198 (298)
T ss_pred ----------------------------------------------------------cccccccCccc---c-cCCCCc
Confidence 00000111221 1 125667
Q ss_pred CCeE----------------EeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHH
Q 048642 525 KPDI----------------TAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSA 588 (782)
Q Consensus 525 KPDI----------------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ 588 (782)
|||+ +|||..|.++...... .......|..++|||||||||||++|||+|++|.|++++
T Consensus 199 ~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~ 273 (298)
T cd07494 199 VPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPER 273 (298)
T ss_pred cCccccccCcCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 7877 4799998766542100 011124799999999999999999999999999999999
Q ss_pred HHHHHHhccccccC
Q 048642 589 IRSAIMTTARTRDN 602 (782)
Q Consensus 589 ik~~L~~TA~~~~~ 602 (782)
||.+|++||+++..
T Consensus 274 v~~~l~~ta~~~~~ 287 (298)
T cd07494 274 ARSLLNKTARDVTK 287 (298)
T ss_pred HHHHHHHhCcccCC
Confidence 99999999998743
No 24
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.2e-41 Score=362.53 Aligned_cols=207 Identities=29% Similarity=0.360 Sum_probs=167.4
Q ss_pred CCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhh---------
Q 048642 220 TARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAI--------- 290 (782)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~--------- 290 (782)
...+..+|||||||||+|...+ ...+.||||+|+|+.+|+++.. +...+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~--------~~~~~GvAp~a~i~~~~v~~~~----~~~~~~i~~a~~~a~~~~~~~~~~ 133 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNN--------GVGVAGVAWGARILPVRVLGKC----GGTLSDIVDGMRWAAGLPVPGVPV 133 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCC--------CCCceeecCCCeEEEEEEecCC----CCcHHHHHHHHHHHhccCcCCCcc
Confidence 4557889999999999998532 2345899999999999999876 347889999999998
Q ss_pred -hCCCeEEEEccCCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCC-CcccCCCCcEEEEccccCCccceeeEEecC
Q 048642 291 -HDGVDVISVSLGGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPEL-GTVTNVSPWIITVGASTLDREFQNFVELRN 368 (782)
Q Consensus 291 -~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~~p~vitVgas~~~~~~~~~~~~~~ 368 (782)
.++++|||||||..... ...+..++..+.++|++||+||||++... ...+...+++|+|||++.+
T Consensus 134 ~~~~~~Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------- 200 (285)
T cd07496 134 NPNPAKVINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR----------- 200 (285)
T ss_pred cCCCCeEEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC-----------
Confidence 46799999999987321 45677788889999999999999999765 4455677899999985432
Q ss_pred CeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEE
Q 048642 369 GQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMI 448 (782)
Q Consensus 369 ~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i 448 (782)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeE
Q 048642 449 LCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDI 528 (782)
Q Consensus 449 ~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI 528 (782)
+.++.||++|+.. ||
T Consensus 201 ---------------------------------------------------------~~~~~~S~~g~~v--------di 215 (285)
T cd07496 201 ---------------------------------------------------------GQRASYSNYGPAV--------DV 215 (285)
T ss_pred ---------------------------------------------------------CCcccccCCCCCC--------CE
Confidence 3678899999987 99
Q ss_pred EeCCceEEEeecCCCCCC--CCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 048642 529 TAPGVNIIAAFTGAIGAT--ELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTT 596 (782)
Q Consensus 529 ~APG~~I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~T 596 (782)
.|||++|.++........ ..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 216 ~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 216 SAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred EeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999999998876532110 00111223478999999999999999999999999999999999999986
No 25
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-41 Score=353.53 Aligned_cols=240 Identities=29% Similarity=0.389 Sum_probs=190.1
Q ss_pred eEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCCc
Q 048642 148 IIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGH 227 (782)
Q Consensus 148 V~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 227 (782)
|+|||||+|||++||+|++. .++...+.+.. ......|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~------------------------~~~~~~~~~~~--------------~~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGK------------------------PKLVPGWNFVS--------------NNDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccC------------------------cCccCCccccC--------------CCCCCCCCCCC
Confidence 68999999999999999863 01111111111 11245678999
Q ss_pred cchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCCCCC-
Q 048642 228 GTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPA- 306 (782)
Q Consensus 228 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~- 306 (782)
||||||||+|+..+ ...+.||||+|+|+.+|++... +.+...++.++++++++.+++|||||||....
T Consensus 43 GT~vAgiiag~~~~--------~~~~~Gvap~a~i~~~~~~~~~---~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~ 111 (242)
T cd07498 43 GTACAGVAAAVGNN--------GLGVAGVAPGAKLMPVRIADSL---GYAYWSDIAQAITWAADNGADVISNSWGGSDST 111 (242)
T ss_pred HHHHHHHHHhccCC--------CceeEeECCCCEEEEEEEECCC---CCccHHHHHHHHHHHHHCCCeEEEeccCCCCCC
Confidence 99999999998522 2345899999999999999866 35688899999999999999999999998732
Q ss_pred CCCCCHHHHHHHHHHh-cCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCCc
Q 048642 307 DYFNDGTAIGAFHAVK-HGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDT 385 (782)
Q Consensus 307 ~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 385 (782)
......+..++.++.+ +|++||+||||+|......+...+++|+||+++..
T Consensus 112 ~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~---------------------------- 163 (242)
T cd07498 112 ESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN---------------------------- 163 (242)
T ss_pred chHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC----------------------------
Confidence 2335567777777888 99999999999997766666778999999985431
Q ss_pred ccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCCc
Q 048642 386 FYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHF 465 (782)
Q Consensus 386 ~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~ 465 (782)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCC
Q 048642 466 LPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGA 545 (782)
Q Consensus 466 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~ 545 (782)
+.++.||++||.. |++|||.++.+.......
T Consensus 164 ----------------------------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~- 194 (242)
T cd07498 164 ----------------------------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGS- 194 (242)
T ss_pred ----------------------------------------CCccCcCCCCCCe--------EEEeCcCCcccCCccccc-
Confidence 3578999999987 999999999887544211
Q ss_pred CCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 048642 546 TELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTT 596 (782)
Q Consensus 546 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~T 596 (782)
..+.....|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 195 ---~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 195 ---AGDYPGGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred ---cccCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 111223478999999999999999999999999999999999999976
No 26
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=2.6e-41 Score=361.99 Aligned_cols=279 Identities=28% Similarity=0.303 Sum_probs=199.9
Q ss_pred cCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCC
Q 048642 141 KGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNT 220 (782)
Q Consensus 141 ~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 220 (782)
++++|+||+|||||||||++||+|.+.... ......+++.....+ ...
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~---------------~~~~~~~~~~~~~~~-----------------~~~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN---------------KTNLFHRKIVRYDSL-----------------SDT 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC---------------cCccCcccEEEeecc-----------------CCC
Confidence 578999999999999999999999764210 001112333222211 112
Q ss_pred CCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEc
Q 048642 221 ARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVS 300 (782)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~S 300 (782)
..|..+|||||||||+|...+... ...+.||||+|+|+.+|++..... ......+..+++++.+.+++|||||
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Vin~S 122 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGN--LSSPPDLNKLFSPMYDAGARISSNS 122 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCcc--ccCCccHHHHHHHHHHhCCEEEecc
Confidence 237899999999999998633211 114699999999999999886621 3567779999999999999999999
Q ss_pred cCCCCCCCCCCHHHHHHHHHH-h-cCcEEEEecCCCCCCCC---cccCCCCcEEEEccccCCccceeeEEecCCeEEeee
Q 048642 301 LGGDPADYFNDGTAIGAFHAV-K-HGIVVVCSAANSGPELG---TVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGT 375 (782)
Q Consensus 301 lG~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~ 375 (782)
||..... .......++.++. + +|++||+||||++.... ..+...+++|+|||++.......
T Consensus 123 ~G~~~~~-~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~------------- 188 (293)
T cd04842 123 WGSPVNN-GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNG------------- 188 (293)
T ss_pred CCCCCcc-ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCcccc-------------
Confidence 9998432 1233333444333 3 89999999999997654 45556899999999765431000
Q ss_pred eccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCC
Q 048642 376 SLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSS 455 (782)
Q Consensus 376 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 455 (782)
..|..
T Consensus 189 ------------------------------~~~~~--------------------------------------------- 193 (293)
T cd04842 189 ------------------------------EGGLG--------------------------------------------- 193 (293)
T ss_pred ------------------------------ccccc---------------------------------------------
Confidence 00000
Q ss_pred CCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceE
Q 048642 456 GNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNI 535 (782)
Q Consensus 456 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I 535 (782)
.......++.||++||+. ++++||||+|||++|
T Consensus 194 ---------------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i 226 (293)
T cd04842 194 ---------------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGI 226 (293)
T ss_pred ---------------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCe
Confidence 001135789999999987 899999999999999
Q ss_pred EEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 048642 536 IAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAH-----P---DWSPSAIRSAIMTTAR 598 (782)
Q Consensus 536 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-----p---~~sp~~ik~~L~~TA~ 598 (782)
+++.+... .........|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 227 ~~~~~~~~----~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 227 LSARSGGG----GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred EeccCCCC----CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 99975530 0111223478999999999999999999999985 4 6667799999999985
No 27
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-41 Score=356.10 Aligned_cols=245 Identities=20% Similarity=0.230 Sum_probs=178.3
Q ss_pred CCCccccCC-CCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccc
Q 048642 135 SSSAWGKGR-FGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNI 213 (782)
Q Consensus 135 ~~~~w~~~~-~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~ 213 (782)
+..+|+... .|+||+|+|||+|||.+||+|.++.. .. .
T Consensus 4 ~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~--------------------------~~---~------------ 42 (277)
T cd04843 4 ARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGI--------------------------TL---I------------ 42 (277)
T ss_pred hHHHHHhcCCCCCcEEEEEecCCCCCCChhhccccc--------------------------cc---c------------
Confidence 567898754 59999999999999999999986411 00 0
Q ss_pred cccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhh--
Q 048642 214 SVNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIH-- 291 (782)
Q Consensus 214 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~-- 291 (782)
....+.|+.+|||||||||+|.. +...+.||||+|+|+.+|++. .++++++|++|++
T Consensus 43 ---~~~~~~d~~gHGT~VAGiIaa~~---------n~~G~~GvAp~a~l~~i~v~~---------~~~~~~ai~~A~~~~ 101 (277)
T cd04843 43 ---SGLTDQADSDHGTAVLGIIVAKD---------NGIGVTGIAHGAQAAVVSSTR---------VSNTADAILDAADYL 101 (277)
T ss_pred ---CCCCCCCCCCCcchhheeeeeec---------CCCceeeeccCCEEEEEEecC---------CCCHHHHHHHHHhcc
Confidence 01124578899999999999973 122358999999999999974 2335556666655
Q ss_pred --CCCeEEEEccCCCCCCC------CCCHHHHHHHHHHhcCcEEEEecCCCCCCCCccc-------------CCCCcEEE
Q 048642 292 --DGVDVISVSLGGDPADY------FNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVT-------------NVSPWIIT 350 (782)
Q Consensus 292 --~g~dVIn~SlG~~~~~~------~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~-------------~~~p~vit 350 (782)
.++.+||||||...... ....+..++.++.++|+++|+||||++....... ...+++|+
T Consensus 102 ~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~ 181 (277)
T cd04843 102 SPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIM 181 (277)
T ss_pred CCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEE
Confidence 46778999999873211 2234556777888999999999999986421111 12357888
Q ss_pred EccccCCccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCc
Q 048642 351 VGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDT 430 (782)
Q Consensus 351 Vgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~ 430 (782)
|||++.+.
T Consensus 182 VgA~~~~~------------------------------------------------------------------------ 189 (277)
T cd04843 182 VGAGSSTT------------------------------------------------------------------------ 189 (277)
T ss_pred EEeccCCC------------------------------------------------------------------------
Confidence 88754321
Q ss_pred chhhhhHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCcccc
Q 048642 431 ARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMAS 510 (782)
Q Consensus 431 ~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 510 (782)
...++.
T Consensus 190 --------------------------------------------------------------------------~~~~~~ 195 (277)
T cd04843 190 --------------------------------------------------------------------------GHTRLA 195 (277)
T ss_pred --------------------------------------------------------------------------CCcccc
Confidence 013789
Q ss_pred ccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHh----h-CCCCC
Q 048642 511 FSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKT----A-HPDWS 585 (782)
Q Consensus 511 fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~p~~s 585 (782)
||++|+.. ||.|||++|+++.+..... ..+.....|..++|||||||||||++|||++ + +|+|+
T Consensus 196 fSn~G~~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt 264 (277)
T cd04843 196 FSNYGSRV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLT 264 (277)
T ss_pred ccCCCCcc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCC
Confidence 99999987 9999999999998764211 0111122457899999999999999999975 3 49999
Q ss_pred HHHHHHHHHhccc
Q 048642 586 PSAIRSAIMTTAR 598 (782)
Q Consensus 586 p~~ik~~L~~TA~ 598 (782)
|+|||++|++|+.
T Consensus 265 ~~~v~~~L~~t~~ 277 (277)
T cd04843 265 PIEMRELLTATGT 277 (277)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999973
No 28
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.4e-41 Score=360.69 Aligned_cols=264 Identities=30% Similarity=0.350 Sum_probs=184.5
Q ss_pred cCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCC
Q 048642 141 KGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNT 220 (782)
Q Consensus 141 ~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~ 220 (782)
.+++|+||+|||||+|||++||+|.+. .+...+|.+ ...
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~--------------------------~~~~~~~~~---------------~~~ 41 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGR--------------------------DITTKSFVG---------------GED 41 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCC--------------------------cccCcccCC---------------CCC
Confidence 567999999999999999999999754 111122221 123
Q ss_pred CCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEc
Q 048642 221 ARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVS 300 (782)
Q Consensus 221 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~S 300 (782)
..|..||||||||||+|+..+ +...||||+|+|+.+|++... +.+....+++||+||++.|++|||||
T Consensus 42 ~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~---~~~~~~~i~~ai~~a~~~g~~Vin~S 109 (297)
T cd07480 42 VQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGD---GGGGDGGILAGIQWAVANGADVISMS 109 (297)
T ss_pred CCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCC---CCCcHHHHHHHHHHHHHcCCCEEEec
Confidence 567899999999999998532 334799999999999998766 35677789999999999999999999
Q ss_pred cCCCCCCC----------CCCHHHHHHHHH---------------HhcCcEEEEecCCCCCCCCcccC-----CCCcEEE
Q 048642 301 LGGDPADY----------FNDGTAIGAFHA---------------VKHGIVVVCSAANSGPELGTVTN-----VSPWIIT 350 (782)
Q Consensus 301 lG~~~~~~----------~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~~-----~~p~vit 350 (782)
||...... ....++.....+ .++|++||+||||++........ ..+.+++
T Consensus 110 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~ 189 (297)
T cd07480 110 LGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMG 189 (297)
T ss_pred cCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccE
Confidence 99863111 111222222233 67999999999999854332211 1123333
Q ss_pred EccccCCccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCc
Q 048642 351 VGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDT 430 (782)
Q Consensus 351 Vgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~ 430 (782)
|++....
T Consensus 190 V~~V~~~------------------------------------------------------------------------- 196 (297)
T cd07480 190 VAAVGAL------------------------------------------------------------------------- 196 (297)
T ss_pred EEEECCC-------------------------------------------------------------------------
Confidence 3332111
Q ss_pred chhhhhHHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCcccc
Q 048642 431 ARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMAS 510 (782)
Q Consensus 431 ~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 510 (782)
+....
T Consensus 197 ---------------------------------------------------------------------------~~~~~ 201 (297)
T cd07480 197 ---------------------------------------------------------------------------GRTGN 201 (297)
T ss_pred ---------------------------------------------------------------------------CCCCC
Confidence 11122
Q ss_pred ccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHH
Q 048642 511 FSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIR 590 (782)
Q Consensus 511 fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik 590 (782)
|+++.+ ....||||+|||.+|+++.+.. .|..++|||||||+|||++|||+|++|.+++.+++
T Consensus 202 ~~~~~~----~~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~ 264 (297)
T cd07480 202 FSAVAN----FSNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALA 264 (297)
T ss_pred ccccCC----CCCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHH
Confidence 333322 2235789999999999988764 89999999999999999999999999999998888
Q ss_pred HHHHhccccccCCCCCCCCCCCCCCCCCcccccccCcc
Q 048642 591 SAIMTTARTRDNTANPMRDGSFKKATPFSYGSGHIRPN 628 (782)
Q Consensus 591 ~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~ 628 (782)
.+|++......... .........+|+|++++.
T Consensus 265 ~~l~~~l~~~~~~~------~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 265 ALLQARLTAARTTQ------FAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HHHHHHHhhcccCC------CCCCCChhhcCCceeecC
Confidence 88884432210000 011234668999999875
No 29
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-40 Score=350.69 Aligned_cols=250 Identities=29% Similarity=0.408 Sum_probs=191.5
Q ss_pred CceEEEEecCCcCcCCCCccCCCCCCCCCCcccc---ccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCC
Q 048642 146 EDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGT---CQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTAR 222 (782)
Q Consensus 146 ~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~---~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (782)
+||+|||||||||++||+|.+. .|... +..+.+ .+....+.. ..+|+... ...++.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~~~~--------~~~~~~ 60 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGID---DDGNGYVDD---IYGWNFVN--------NDNDPM 60 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcc---cCCCCcccC---CCcccccC--------CCCCCC
Confidence 6899999999999999999874 23211 111111 000000000 00111110 234567
Q ss_pred CCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccC
Q 048642 223 DHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLG 302 (782)
Q Consensus 223 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG 302 (782)
|..+|||||||||+|...+ ...+.||||+|+|+.+|++... +.+...+++++|+++++.+++|||+|||
T Consensus 61 d~~~HGT~va~ii~~~~~~--------~~~~~GvAp~a~l~~~~~~~~~---~~~~~~~~~~a~~~a~~~~~~vin~S~G 129 (259)
T cd07473 61 DDNGHGTHVAGIIGAVGNN--------GIGIAGVAWNVKIMPLKFLGAD---GSGTTSDAIKAIDYAVDMGAKIINNSWG 129 (259)
T ss_pred CCCCcHHHHHHHHHCcCCC--------CCceEEeCCCCEEEEEEEeCCC---CCcCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 8899999999999998532 2335899999999999999876 3578899999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCC---CcccC--CCCcEEEEccccCCccceeeEEecCCeEEeeeec
Q 048642 303 GDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPEL---GTVTN--VSPWIITVGASTLDREFQNFVELRNGQRFKGTSL 377 (782)
Q Consensus 303 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~ 377 (782)
... ....+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+.+
T Consensus 130 ~~~---~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~-------------------- 186 (259)
T cd07473 130 GGG---PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN-------------------- 186 (259)
T ss_pred CCC---CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC--------------------
Confidence 883 256777888889999999999999998652 22333 35789999975421
Q ss_pred cCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCC
Q 048642 378 SKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGN 457 (782)
Q Consensus 378 ~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~ 457 (782)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEE
Q 048642 458 EITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIA 537 (782)
Q Consensus 458 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s 537 (782)
+.++.||++||. +||+.|||.++++
T Consensus 187 ------------------------------------------------~~~~~~s~~g~~-------~~~~~apG~~~~~ 211 (259)
T cd07473 187 ------------------------------------------------DALASFSNYGKK-------TVDLAAPGVDILS 211 (259)
T ss_pred ------------------------------------------------CCcCcccCCCCC-------CcEEEeccCCeEe
Confidence 356679999985 3699999999999
Q ss_pred eecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 048642 538 AFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTAR 598 (782)
Q Consensus 538 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 598 (782)
..+.. .|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 212 ~~~~~-------------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 212 TSPGG-------------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ccCCC-------------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 76553 8899999999999999999999999999999999999999984
No 30
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=7.1e-41 Score=345.41 Aligned_cols=227 Identities=33% Similarity=0.490 Sum_probs=188.2
Q ss_pred ceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCC
Q 048642 147 DIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEG 226 (782)
Q Consensus 147 gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 226 (782)
||+|||||+||+++||+|.+. +.....|... ......|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~--------------------------~~~~~~~~~~-------------~~~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN--------------------------IVGGANFTGD-------------DNNDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc--------------------------ccCcccccCC-------------CCCCCCCCCC
Confidence 799999999999999999754 2222223211 1124567889
Q ss_pred ccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCCCCC
Q 048642 227 HGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPA 306 (782)
Q Consensus 227 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 306 (782)
|||||||||++... ...+.|+||+|+|+.+|+++.. +.+...+++++++++++.+++|||||||..
T Consensus 42 HGT~vA~ii~~~~~---------~~~~~giap~a~i~~~~~~~~~---~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~-- 107 (229)
T cd07477 42 HGTHVAGIIAALDN---------GVGVVGVAPEADLYAVKVLNDD---GSGTYSDIIAGIEWAIENGMDIINMSLGGP-- 107 (229)
T ss_pred CHHHHHHHHhcccC---------CCccEeeCCCCEEEEEEEECCC---CCcCHHHHHHHHHHHHHCCCCEEEECCccC--
Confidence 99999999999852 2255899999999999999876 456778999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcc--cCCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCC
Q 048642 307 DYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTV--TNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPND 384 (782)
Q Consensus 307 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 384 (782)
.....+..++..+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 108 -~~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~--------------------------- 159 (229)
T cd07477 108 -SDSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN--------------------------- 159 (229)
T ss_pred -CCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC---------------------------
Confidence 2344566777788999999999999999776554 6678999999985432
Q ss_pred cccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCC
Q 048642 385 TFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPH 464 (782)
Q Consensus 385 ~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 464 (782)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCC
Q 048642 465 FLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIG 544 (782)
Q Consensus 465 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~ 544 (782)
+.++.||++|+.. |+.|||.+|+++++..
T Consensus 160 -----------------------------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~-- 188 (229)
T cd07477 160 -----------------------------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPNN-- 188 (229)
T ss_pred -----------------------------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCCC--
Confidence 3567899999976 9999999999998764
Q ss_pred CCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 048642 545 ATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTT 596 (782)
Q Consensus 545 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~T 596 (782)
.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 189 -----------~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 189 -----------DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred -----------CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 88999999999999999999999999999999999999986
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.9e-40 Score=343.19 Aligned_cols=161 Identities=22% Similarity=0.239 Sum_probs=119.7
Q ss_pred CCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCC
Q 048642 145 GEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDH 224 (782)
Q Consensus 145 G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 224 (782)
+++|+|||||||||++||+|+++ +...+.|......... ......|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~--------------------------i~~~~~~~~~~~~~~~-------~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK--------------------------IIGGKSFSPYEGDGNK-------VSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc--------------------------cccCCCCCCCCCCccc-------CCCCCCCC
Confidence 78999999999999999999753 2222233221000000 11123578
Q ss_pred CCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCC---CCCChhHHHHHHHHhhhCCCeEEEEcc
Q 048642 225 EGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSD---GQCFDADILKGFDMAIHDGVDVISVSL 301 (782)
Q Consensus 225 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~---g~~~~~~i~~ai~~a~~~g~dVIn~Sl 301 (782)
.||||||||||+ |+||+|+|+.+|+++..... ..+....+++||+||+++|+|||||||
T Consensus 49 ~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~ 110 (247)
T cd07491 49 DGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSW 110 (247)
T ss_pred CCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeee
Confidence 899999999996 45999999999999866311 135677899999999999999999999
Q ss_pred CCCCCC---CCCCHHHHHHHHHHhcCcEEEEecCCCCCCCC-ccc--CCCCcEEEEccccC
Q 048642 302 GGDPAD---YFNDGTAIGAFHAVKHGIVVVCSAANSGPELG-TVT--NVSPWIITVGASTL 356 (782)
Q Consensus 302 G~~~~~---~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~-~~~--~~~p~vitVgas~~ 356 (782)
|..... .....+..++.+|.++|++||+||||+|.... .+. ...|++|+|||++.
T Consensus 111 g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~ 171 (247)
T cd07491 111 TIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE 171 (247)
T ss_pred ecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC
Confidence 987321 12566788888999999999999999997654 333 35689999998653
No 32
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.3e-39 Score=334.19 Aligned_cols=222 Identities=23% Similarity=0.282 Sum_probs=174.7
Q ss_pred ceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCC
Q 048642 147 DIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEG 226 (782)
Q Consensus 147 gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 226 (782)
||+|||||||||++||+|.+.- ...+.+..+ ... . +.....|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~--------------------------~~~~~~~~~-~~~----~----~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLA--------------------------LDGEVTIDL-EII----V----VSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccc--------------------------ccccccccc-ccc----c----CCCCCCCCCC
Confidence 7999999999999999998641 111111100 000 0 2335568899
Q ss_pred ccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCCCCC
Q 048642 227 HGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPA 306 (782)
Q Consensus 227 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 306 (782)
|||||||||++. +|+++|+.+|+++.. +.+..+.+++||+|++++|++|||||||....
T Consensus 46 HGT~vAgiia~~------------------~p~~~i~~~~v~~~~---~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~ 104 (222)
T cd07492 46 HGTACAGIIKKY------------------APEAEIGSIKILGED---GRCNSFVLEKALRACVENDIRIVNLSLGGPGD 104 (222)
T ss_pred cHHHHHHHHHcc------------------CCCCeEEEEEEeCCC---CCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC
Confidence 999999999875 699999999999876 46788899999999999999999999998732
Q ss_pred CCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCCCCCCcc
Q 048642 307 DYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKSLPNDTF 386 (782)
Q Consensus 307 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 386 (782)
.....+..++.++.++|+++|+||||++.... .+...+++|+||+....+
T Consensus 105 -~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~---------------------------- 154 (222)
T cd07492 105 -RDFPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD---------------------------- 154 (222)
T ss_pred -CcCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC----------------------------
Confidence 22345677778888999999999999986433 355678899999743211
Q ss_pred cceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccCCCcc
Q 048642 387 YPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITADPHFL 466 (782)
Q Consensus 387 ~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~ 466 (782)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeecCCCCCC
Q 048642 467 PASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFTGAIGAT 546 (782)
Q Consensus 467 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 546 (782)
.. +.+++ ++|+.|||.+|+++.+..
T Consensus 155 ----------------------------------------~~---~~~~~--------~~~~~apg~~i~~~~~~~---- 179 (222)
T cd07492 155 ----------------------------------------PK---SFWYI--------YVEFSADGVDIIAPAPHG---- 179 (222)
T ss_pred ----------------------------------------Cc---ccccC--------CceEEeCCCCeEeecCCC----
Confidence 11 11233 349999999999988764
Q ss_pred CCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 048642 547 ELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTAR 598 (782)
Q Consensus 547 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 598 (782)
.|..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 180 ---------~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 ---------RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ---------CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999984
No 33
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=1.6e-40 Score=353.88 Aligned_cols=274 Identities=32% Similarity=0.472 Sum_probs=206.8
Q ss_pred EEEEecCCcCcCCCCcc-CCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCCc
Q 048642 149 IIANLDTGVWPESKSFS-DEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEGH 227 (782)
Q Consensus 149 ~VaVIDtGid~~Hp~f~-~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 227 (782)
+|||||||||++||+|. .+ + ...++.+.+.|.++. . ......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~--------------------~~~~~~~~~~~~~~~------~-----~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F--------------------IWSKVPGGYNFVDGN------P-----NPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E--------------------EEEEEEEEEETTTTB------S-----TTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCC-c--------------------ccccccceeeccCCC------C-----CcCccccCCCc
Confidence 69999999999999998 33 0 011122223332221 0 23456688899
Q ss_pred cchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhh-hCCCeEEEEccCCCC-
Q 048642 228 GTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAI-HDGVDVISVSLGGDP- 305 (782)
Q Consensus 228 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~-~~g~dVIn~SlG~~~- 305 (782)
||||||||+|.. . . ......|+||+|+|+.+|++... ......++++|++++ +++++|||||||...
T Consensus 49 GT~va~ii~~~~-~-~-----~~~~~~Gva~~a~l~~~~i~~~~----~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~ 117 (282)
T PF00082_consen 49 GTHVAGIIAGNG-G-N-----NGPGINGVAPNAKLYSYKIFDNS----GGTSSDLIEAIEYAVKNDGVDVINLSFGSNSG 117 (282)
T ss_dssp HHHHHHHHHHTT-S-S-----SSSSETCSSTTSEEEEEECSSTT----SEEHHHHHHHHHHHHHHTTSSEEEECEEBEES
T ss_pred cchhhhhccccc-c-c-----ccccccccccccccccccccccc----ccccccccchhhhhhhccCCcccccccccccc
Confidence 999999999985 2 1 23345899999999999998766 367888999999999 899999999999831
Q ss_pred --CCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCc---ccCCCCcEEEEccccCCccceeeEEecCCeEEeeeeccCC
Q 048642 306 --ADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGT---VTNVSPWIITVGASTLDREFQNFVELRNGQRFKGTSLSKS 380 (782)
Q Consensus 306 --~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~~ 380 (782)
.....+.+..+...+.++|+++|+||||+|..... .+...+++|+||+++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~------------------------ 173 (282)
T PF00082_consen 118 PPDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN------------------------ 173 (282)
T ss_dssp SSHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET------------------------
T ss_pred ccccccccccccccccccccCcceeecccccccccccccccccccccccccccccc------------------------
Confidence 11223345566668889999999999999876553 3334588899997432
Q ss_pred CCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccc
Q 048642 381 LPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEIT 460 (782)
Q Consensus 381 ~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 460 (782)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEeec
Q 048642 461 ADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAFT 540 (782)
Q Consensus 461 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~~ 540 (782)
.+.++.||++|+.. .++++||||+|||.+|+++++
T Consensus 174 --------------------------------------------~~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~ 208 (282)
T PF00082_consen 174 --------------------------------------------NGQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVP 208 (282)
T ss_dssp --------------------------------------------TSSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEET
T ss_pred --------------------------------------------cccccccccccccc-ccccccccccccccccccccc
Confidence 13568899997543 278999999999999999887
Q ss_pred CCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCcc
Q 048642 541 GAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKATPFSY 620 (782)
Q Consensus 541 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~~~~~~ 620 (782)
.... ..|..++|||||||+|||++|||+|++|++++.+||.+|++||.++...+ ....+..|
T Consensus 209 ~~~~----------~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~--------~~~~~~~~ 270 (282)
T PF00082_consen 209 GSDR----------GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN--------GEGYDNSY 270 (282)
T ss_dssp TTES----------EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT--------SSSSHHHH
T ss_pred cccc----------ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC--------CCCCCCCc
Confidence 6410 26888999999999999999999999999999999999999999886211 23456789
Q ss_pred cccccCccccCC
Q 048642 621 GSGHIRPNRAMD 632 (782)
Q Consensus 621 G~G~vd~~~A~~ 632 (782)
|||+||+.+|++
T Consensus 271 G~G~in~~~a~~ 282 (282)
T PF00082_consen 271 GWGLINAEKALN 282 (282)
T ss_dssp TTSBE-HHHHHH
T ss_pred cCChhCHHHHhC
Confidence 999999999874
No 34
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=1.5e-39 Score=348.57 Aligned_cols=254 Identities=25% Similarity=0.282 Sum_probs=175.7
Q ss_pred ceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCCCCC
Q 048642 147 DIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARDHEG 226 (782)
Q Consensus 147 gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 226 (782)
.|+|||||||||++||+|++.-. ...+.+............... +.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSIS-------------------------SYSKNLVPKGGYDGKEAGETG-DINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccc-------------------------ccccccccCCCcCCccccccC-CCCcCCCCCC
Confidence 38999999999999999985310 000111000000000000000 1234567899
Q ss_pred ccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCCCCC
Q 048642 227 HGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGDPA 306 (782)
Q Consensus 227 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 306 (782)
|||||||+|+|... ..||||+|+|+.+|+++.. +.....+++++|++|++++++|||||||....
T Consensus 55 HGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~---~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~ 119 (294)
T cd07482 55 HGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSC---GSAESSWIIKAIIDAADDGVDVINLSLGGYLI 119 (294)
T ss_pred cHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCC---CCcCHHHHHHHHHHHHHCCCCEEEeCCccCCC
Confidence 99999999998731 2499999999999999876 34578899999999999999999999998632
Q ss_pred CCC--------CCHHHHHHHHHHhcCcEEEEecCCCCCCCCc----------------------ccCCCCcEEEEccccC
Q 048642 307 DYF--------NDGTAIGAFHAVKHGIVVVCSAANSGPELGT----------------------VTNVSPWIITVGASTL 356 (782)
Q Consensus 307 ~~~--------~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~----------------------~~~~~p~vitVgas~~ 356 (782)
... .+.+..++..+.++|++||+||||+|..... .+...+++|+|||++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~~ 199 (294)
T cd07482 120 IGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATDN 199 (294)
T ss_pred CCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeCC
Confidence 111 1345666677889999999999999864311 1123345555555322
Q ss_pred CccceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhh
Q 048642 357 DREFQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKG 436 (782)
Q Consensus 357 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~ 436 (782)
T Consensus 200 -------------------------------------------------------------------------------- 199 (294)
T cd07482 200 -------------------------------------------------------------------------------- 199 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCC
Q 048642 437 RQAAVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGP 516 (782)
Q Consensus 437 ~~~~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp 516 (782)
.+.++.||++|+
T Consensus 200 --------------------------------------------------------------------~~~~~~~S~~g~ 211 (294)
T cd07482 200 --------------------------------------------------------------------NGNLSSFSNYGN 211 (294)
T ss_pred --------------------------------------------------------------------CCCcCccccCCC
Confidence 246778999987
Q ss_pred CCCCCCCcCCeEEeCCceEEEeecCCCCC---CC------CCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCH-
Q 048642 517 NKITPEILKPDITAPGVNIIAAFTGAIGA---TE------LPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSP- 586 (782)
Q Consensus 517 ~~~~~~~~KPDI~APG~~I~sa~~~~~~~---~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp- 586 (782)
.. +|++|||+++....+..... .. .......+.|..++|||||||+|||++|||+|++|.+++
T Consensus 212 ~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~ 284 (294)
T cd07482 212 SR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPP 284 (294)
T ss_pred Cc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcH
Confidence 54 49999999985332211100 00 001123457899999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 048642 587 SAIRSAIMTT 596 (782)
Q Consensus 587 ~~ik~~L~~T 596 (782)
.|||++|++|
T Consensus 285 ~~v~~~L~~T 294 (294)
T cd07482 285 DEAIRILYNT 294 (294)
T ss_pred HHHHHHHhhC
Confidence 9999999987
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=8.4e-40 Score=350.88 Aligned_cols=248 Identities=23% Similarity=0.252 Sum_probs=182.3
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
...+|..+.+|+||+|+|||||||++||+|.+.... ...+.|..+.
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~------------------------~~~~~~~~~~---------- 73 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP------------------------EASYDFNDND---------- 73 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc------------------------cccccccCCC----------
Confidence 678999999999999999999999999999764110 0111222110
Q ss_pred ccCCCCC--CCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhC
Q 048642 215 VNFNNTA--RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD 292 (782)
Q Consensus 215 ~~~~~~~--~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~ 292 (782)
....+ .|..||||||||||+|+..+. ....||||+|+|+.+|++... .....+..++.++.+
T Consensus 74 --~~~~~~~~~~~gHGT~vAgiiag~~~~~--------~~~~GvAp~a~l~~~~~~~~~-----~~~~~~~~~~~~~~~- 137 (297)
T cd04059 74 --PDPTPRYDDDNSHGTRCAGEIAAVGNNG--------ICGVGVAPGAKLGGIRMLDGD-----VTDVVEAESLGLNPD- 137 (297)
T ss_pred --CCCCCccccccccCcceeeEEEeecCCC--------cccccccccceEeEEEecCCc-----cccHHHHHHHhcccC-
Confidence 01122 278899999999999985221 134899999999999998754 344455666666554
Q ss_pred CCeEEEEccCCCCCC----CCCCHHHHHHHHHHh-----cCcEEEEecCCCCCCCCc--c--cCCCCcEEEEccccCCcc
Q 048642 293 GVDVISVSLGGDPAD----YFNDGTAIGAFHAVK-----HGIVVVCSAANSGPELGT--V--TNVSPWIITVGASTLDRE 359 (782)
Q Consensus 293 g~dVIn~SlG~~~~~----~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~~~~--~--~~~~p~vitVgas~~~~~ 359 (782)
.++|||||||..... ........++.++.+ +|++||+||||+|..... . ....+++|+|||++.+
T Consensus 138 ~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~-- 215 (297)
T cd04059 138 YIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN-- 215 (297)
T ss_pred CceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC--
Confidence 569999999987321 122334444555543 699999999999973221 1 2346889999985432
Q ss_pred ceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHH
Q 048642 360 FQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQA 439 (782)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~ 439 (782)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCC
Q 048642 440 AVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKI 519 (782)
Q Consensus 440 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 519 (782)
+.++.||++|+..
T Consensus 216 ------------------------------------------------------------------g~~~~~s~~g~~~- 228 (297)
T cd04059 216 ------------------------------------------------------------------GVRASYSEVGSSV- 228 (297)
T ss_pred ------------------------------------------------------------------CCCcCCCCCCCcE-
Confidence 4678899999987
Q ss_pred CCCCcCCeEEeCCce-------EEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHH
Q 048642 520 TPEILKPDITAPGVN-------IIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSA 592 (782)
Q Consensus 520 ~~~~~KPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~ 592 (782)
++.|||.. |+++.... ....|..++|||||||+|||++|||+|+||+|++.|||++
T Consensus 229 -------~~~a~g~~~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~ 291 (297)
T cd04059 229 -------LASAPSGGSGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHI 291 (297)
T ss_pred -------EEEecCCCCCCCCCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHH
Confidence 99999987 66665441 0126788999999999999999999999999999999999
Q ss_pred HHhccc
Q 048642 593 IMTTAR 598 (782)
Q Consensus 593 L~~TA~ 598 (782)
|++||+
T Consensus 292 L~~TA~ 297 (297)
T cd04059 292 LALTAR 297 (297)
T ss_pred HHHhcC
Confidence 999984
No 36
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-38 Score=334.50 Aligned_cols=360 Identities=23% Similarity=0.354 Sum_probs=273.1
Q ss_pred CCeEEEEeCCCCCCCCccccccccchhhHHHHHHHhhCCccc------ccccEeEEeccceeeEEEEcCH-----HHHHH
Q 048642 30 KQSYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGSTEK------ARDAIFYSYQNHINGFAATLEE-----EEAAE 98 (782)
Q Consensus 30 ~~~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~i~~~y~~~~ng~s~~~~~-----~~~~~ 98 (782)
+..|||+|+..-. ...++..+++.+..... .+...-..|...|.-+.++-.. -++++
T Consensus 49 e~EyIv~F~~y~~------------Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ier 116 (1033)
T KOG4266|consen 49 ESEYIVRFKQYKP------------AKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIER 116 (1033)
T ss_pred cceeEEEeccccc------------chHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeee
Confidence 4679999998554 35566777776653321 2334455676777777666543 34799
Q ss_pred HhCCCCeEEEEecccccccc------------ccccccc-cc-------------ccCC-----------cccCCCcccc
Q 048642 99 IAKHPDVVSIFPNKGKKLHT------------TRSWDFM-LL-------------ENNG-----------VIHSSSAWGK 141 (782)
Q Consensus 99 L~~~p~V~~V~~~~~~~~~~------------~~s~~~~-g~-------------~~~~-----------~~~~~~~w~~ 141 (782)
|..+|.|+.|.|.+.+..-. +....++ |. .... ...++.+|.+
T Consensus 117 Le~hp~vk~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~ 196 (1033)
T KOG4266|consen 117 LEMHPDVKVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKK 196 (1033)
T ss_pred hhcCCCceeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhc
Confidence 99999999999987753210 0000000 00 0000 1146889999
Q ss_pred CCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCC
Q 048642 142 GRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTA 221 (782)
Q Consensus 142 ~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (782)
|+||++|+|||.|||+.-+||.|+.- ..-.+++ +...-
T Consensus 197 GyTGa~VkvAiFDTGl~~~HPHFrnv---------------------------KERTNWT---------------NE~tL 234 (1033)
T KOG4266|consen 197 GYTGAKVKVAIFDTGLRADHPHFRNV---------------------------KERTNWT---------------NEDTL 234 (1033)
T ss_pred cccCCceEEEEeecccccCCccccch---------------------------hhhcCCc---------------Ccccc
Confidence 99999999999999999999999742 1111111 12345
Q ss_pred CCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEcc
Q 048642 222 RDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSL 301 (782)
Q Consensus 222 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~Sl 301 (782)
.|..||||.|||+|||.. ...|.||+++|+++|||.+. .-..++.+++|+.||+...+||+|+|+
T Consensus 235 dD~lgHGTFVAGvia~~~------------ec~gfa~d~e~~~frvft~~---qVSYTSWFLDAFNYAI~~kidvLNLSI 299 (1033)
T KOG4266|consen 235 DDNLGHGTFVAGVIAGRN------------ECLGFASDTEIYAFRVFTDA---QVSYTSWFLDAFNYAIATKIDVLNLSI 299 (1033)
T ss_pred ccCcccceeEeeeeccch------------hhcccCCccceeEEEeeccc---eeehhhHHHHHHHHHHhhhcceEeecc
Confidence 678899999999999873 34788999999999999877 246789999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCCCC--cEEEEccccCCccceeeEEecCCeEEeeeeccC
Q 048642 302 GGDPADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNVSP--WIITVGASTLDREFQNFVELRNGQRFKGTSLSK 379 (782)
Q Consensus 302 G~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~~p--~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~ 379 (782)
|++ ++.+.|+-.-+.......|++|.|+||+||-.++..+++. .||.||..+.
T Consensus 300 GGP--DfmD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVGGIdf----------------------- 354 (1033)
T KOG4266|consen 300 GGP--DFMDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVGGIDF----------------------- 354 (1033)
T ss_pred CCc--ccccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeeccccc-----------------------
Confidence 998 4667777767778889999999999999999999888764 5677764221
Q ss_pred CCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCcc
Q 048642 380 SLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEI 459 (782)
Q Consensus 380 ~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 459 (782)
T Consensus 355 -------------------------------------------------------------------------------- 354 (1033)
T KOG4266|consen 355 -------------------------------------------------------------------------------- 354 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCC----CCCCCcCCeEEeCCceE
Q 048642 460 TADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNK----ITPEILKPDITAPGVNI 535 (782)
Q Consensus 460 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~----~~~~~~KPDI~APG~~I 535 (782)
.+.+|.|||||-+. ...||+||||++-|.+|
T Consensus 355 ---------------------------------------------dD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v 389 (1033)
T KOG4266|consen 355 ---------------------------------------------DDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDV 389 (1033)
T ss_pred ---------------------------------------------cchhhhhccCCcceeecCCcccccCCceEeecccc
Confidence 36899999999654 24789999999999999
Q ss_pred EEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccccCCCCCCCCCC
Q 048642 536 IAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKT----AHPDWSPSAIRSAIMTTARTRDNTANPMRDGS 611 (782)
Q Consensus 536 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~ 611 (782)
....... +...+||||.|+|.|||+++||.+ +.--+.|+.+|++|+..|.++...+
T Consensus 390 ~GS~v~~-------------GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~N------- 449 (1033)
T KOG4266|consen 390 MGSKVST-------------GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGPN------- 449 (1033)
T ss_pred ccCcccc-------------cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCCc-------
Confidence 8765543 778999999999999999999976 3345689999999999999986432
Q ss_pred CCCCCCCcccccccCccccCCC
Q 048642 612 FKKATPFSYGSGHIRPNRAMDP 633 (782)
Q Consensus 612 ~~~~~~~~~G~G~vd~~~A~~~ 633 (782)
-+.||+|++|+.++++-
T Consensus 450 -----MfEQGaGkldLL~syqi 466 (1033)
T KOG4266|consen 450 -----MFEQGAGKLDLLESYQI 466 (1033)
T ss_pred -----hhhccCcchhHHHHHHH
Confidence 47899999999998873
No 37
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=2.4e-38 Score=334.28 Aligned_cols=244 Identities=25% Similarity=0.319 Sum_probs=187.0
Q ss_pred CCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhcccccccccCCCCCCC
Q 048642 144 FGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNISVNFNNTARD 223 (782)
Q Consensus 144 ~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~~~~~~~~d 223 (782)
+|+||+|+|||+||+++||+|.+.... ...+...... ......|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~--------------------------~~~~~~~~~~----------~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSE--------------------------ASYYVAVNDA----------GYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccc--------------------------cccccccccc----------cCCCCCC
Confidence 699999999999999999999864110 0000000000 0124557
Q ss_pred CCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCC
Q 048642 224 HEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGG 303 (782)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~ 303 (782)
..+|||||||+|+|...+ ....|+||+|+|+.+|+++... ..+....+.++++++++.+++|||||||.
T Consensus 45 ~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Vin~S~g~ 113 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAG--STFSDADIAAAYDFLAASGVRIINNSWGG 113 (267)
T ss_pred CCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCC--cccchHHHHHHHHHHHhCCCeEEEccCCC
Confidence 889999999999998522 4568999999999999998752 14667889999999999999999999998
Q ss_pred CCCC------------CCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCccc---------CCCCcEEEEccccCCcccee
Q 048642 304 DPAD------------YFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVT---------NVSPWIITVGASTLDREFQN 362 (782)
Q Consensus 304 ~~~~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~---------~~~p~vitVgas~~~~~~~~ 362 (782)
.... .....+......+.++|+++|+||||++....... ...+++|+||+++.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~---- 189 (267)
T cd04848 114 NPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG---- 189 (267)
T ss_pred CCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC----
Confidence 8421 14455667777888999999999999986543322 2357899999865432
Q ss_pred eEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHc
Q 048642 363 FVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVA 442 (782)
Q Consensus 363 ~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~ 442 (782)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCcccc--ccCCCCCCCC
Q 048642 443 GAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMAS--FSSAGPNKIT 520 (782)
Q Consensus 443 Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~~~~ 520 (782)
.... ||++|+..
T Consensus 190 ----------------------------------------------------------------~~~~~~~s~~~~~~-- 203 (267)
T cd04848 190 ----------------------------------------------------------------TIASYSYSNRCGVA-- 203 (267)
T ss_pred ----------------------------------------------------------------Ccccccccccchhh--
Confidence 2223 48888643
Q ss_pred CCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 048642 521 PEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTAR 598 (782)
Q Consensus 521 ~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~ 598 (782)
..+++.|||.+|+++.+.. ...|..++|||||||+|||++|||+|++|++++++||++|++||+
T Consensus 204 ---~~~~~~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 204 ---ANWCLAAPGENIYSTDPDG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred ---hhheeecCcCceeecccCC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 2347999999999998731 127889999999999999999999999999999999999999985
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-33 Score=290.04 Aligned_cols=193 Identities=23% Similarity=0.220 Sum_probs=142.0
Q ss_pred CCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHh--hhCCCeEE
Q 048642 220 TARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMA--IHDGVDVI 297 (782)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a--~~~g~dVI 297 (782)
...|..+|||||||||||. .|++|+|+|+..++.. .....+.++++|+ .+.+++||
T Consensus 32 ~~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~-------~~~~~~~~~i~~~~~~~~gv~VI 89 (247)
T cd07488 32 RNNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI-------KSNNGQWQECLEAQQNGNNVKII 89 (247)
T ss_pred CCCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC-------CCCCccHHHHHHHHHhcCCceEE
Confidence 3457899999999999997 3567999999766632 2333466778888 66899999
Q ss_pred EEccCCCCCCC------CCCHHHHHHHHHHhc-CcEEEEecCCCCCCCCc-----ccCCCCcEEEEccccCCccceeeEE
Q 048642 298 SVSLGGDPADY------FNDGTAIGAFHAVKH-GIVVVCSAANSGPELGT-----VTNVSPWIITVGASTLDREFQNFVE 365 (782)
Q Consensus 298 n~SlG~~~~~~------~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~~-----~~~~~p~vitVgas~~~~~~~~~~~ 365 (782)
|||||...... ..+.+..++..+.++ |+++|+||||+|..... .+..++++|+|||++....
T Consensus 90 NmS~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~------ 163 (247)
T cd07488 90 NHSYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD------ 163 (247)
T ss_pred EeCCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC------
Confidence 99999873221 223466666776666 99999999999975322 2335688999998654321
Q ss_pred ecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCce
Q 048642 366 LRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAV 445 (782)
Q Consensus 366 ~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~ 445 (782)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCC--CCCCCCCCC
Q 048642 446 GMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSA--GPNKITPEI 523 (782)
Q Consensus 446 g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~--Gp~~~~~~~ 523 (782)
....+.||++ +|+. ++.
T Consensus 164 -----------------------------------------------------------~~~~s~~sn~~~~~~~--~~~ 182 (247)
T cd07488 164 -----------------------------------------------------------RFFASDVSNAGSEINS--YGR 182 (247)
T ss_pred -----------------------------------------------------------cceecccccccCCCCC--CCC
Confidence 0123455665 4443 778
Q ss_pred cCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCH------HHHHHHHHhc
Q 048642 524 LKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSP------SAIRSAIMTT 596 (782)
Q Consensus 524 ~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp------~~ik~~L~~T 596 (782)
.||||+|||++|++ +.+ .|..++|||||||||||++|||++++|++.+ .++|.+|+.|
T Consensus 183 ~~~di~APG~~i~s--~~~-------------~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 183 RKVLIVAPGSNYNL--PDG-------------KDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred ceeEEEEeeeeEEC--CCC-------------ceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 99999999999998 322 7889999999999999999999999887764 4567776665
No 39
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.1e-33 Score=307.74 Aligned_cols=359 Identities=22% Similarity=0.291 Sum_probs=231.8
Q ss_pred CCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCC
Q 048642 224 HEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGG 303 (782)
Q Consensus 224 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~ 303 (782)
..-|||||||||+|+.-. .....||||+|+|+.+++.+..-.. --+...+.+|+..++++++||||||+|-
T Consensus 309 Sg~HGTHVAgIa~anhpe--------~p~~NGvAPgaqIvSl~IGD~RLgs-METgtaltRA~~~v~e~~vDiINmSyGE 379 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPE--------TPELNGVAPGAQIVSLKIGDGRLGS-METGTALTRAMIEVIEHNVDIINMSYGE 379 (1304)
T ss_pred CCCCcceehhhhccCCCC--------CccccCCCCCCEEEEEEecCccccc-cccchHHHHHHHHHHHhcCCEEEeccCc
Confidence 346999999999999733 2345789999999999997654211 2345678999999999999999999998
Q ss_pred CC-CCCCCCHHHHHHHHHHhcCcEEEEecCCCCCCCCcccCC---CCcEEEEccccCCccceeeEEecCCeEEeeeeccC
Q 048642 304 DP-ADYFNDGTAIGAFHAVKHGIVVVCSAANSGPELGTVTNV---SPWIITVGASTLDREFQNFVELRNGQRFKGTSLSK 379 (782)
Q Consensus 304 ~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~~---~p~vitVgas~~~~~~~~~~~~~~~~~~~g~~~~~ 379 (782)
.. -+.....++..-..+.+.|+++|.||||+||...+++.+ ...+|.|||--......
T Consensus 380 ~a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm~------------------ 441 (1304)
T KOG1114|consen 380 DAHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMMQ------------------ 441 (1304)
T ss_pred cCCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHHH------------------
Confidence 73 223334455444445599999999999999998888764 35789999832211000
Q ss_pred CCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCcc
Q 048642 380 SLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEI 459 (782)
Q Consensus 380 ~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 459 (782)
..|.+.
T Consensus 442 -----a~y~~~--------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 442 -----AEYSVR--------------------------------------------------------------------- 447 (1304)
T ss_pred -----hhhhhh---------------------------------------------------------------------
Confidence 000000
Q ss_pred ccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCCCcCCeEEeCCceEEEee
Q 048642 460 TADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPEILKPDITAPGVNIIAAF 539 (782)
Q Consensus 460 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~sa~ 539 (782)
.+-....-.+|||||+. ||.+--.|+|||+.|.+--
T Consensus 448 ------------------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsVP 483 (1304)
T KOG1114|consen 448 ------------------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASVP 483 (1304)
T ss_pred ------------------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCCc
Confidence 00023577899999998 9999999999999996543
Q ss_pred cCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccccCCCCCCCCCCCCCC
Q 048642 540 TGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKT----AHPDWSPSAIRSAIMTTARTRDNTANPMRDGSFKKA 615 (782)
Q Consensus 540 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~p~~sp~~ik~~L~~TA~~~~~~g~~~~~~~~~~~ 615 (782)
.... ..-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||.++++.
T Consensus 484 ~~tl-----------q~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i------------ 540 (1304)
T KOG1114|consen 484 QYTL-----------QNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI------------ 540 (1304)
T ss_pred hhhh-----------hhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc------------
Confidence 2221 1567899999999999999999965 467899999999999999998643
Q ss_pred CCCcccccccCccccCCCCccccCCcchhhhhcccCCCCccceeeeccceecccCCC---CCCCCCCCcEEeeccCceEE
Q 048642 616 TPFSYGSGHIRPNRAMDPGLVYDLSEDDYLDFLCSIGYNQTTIKRFFGTQYECSKSA---NLEDFNYPSISVPMISGSVT 692 (782)
Q Consensus 616 ~~~~~G~G~vd~~~A~~~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~n~ps~~~~~~~~~~t 692 (782)
.++.||.|+|++.+|.+--. +.-..|.-.++| |..-.|+ +|...- .+-..+- ...
T Consensus 541 d~faqG~GmlqVdkAyEyL~------q~~~~f~~~l~f----~~v~VgN--~~srGIyLRep~~~~~----------p~e 598 (1304)
T KOG1114|consen 541 DSFAQGQGMLQVDKAYEYLA------QSDFSFPNALGF----INVNVGN--SCSRGIYLREPTQVCS----------PSE 598 (1304)
T ss_pred chhccCcceeehhHHHHHHH------HhhhcCCcccee----EEEeecc--ccccceEecCCcccCC----------ccc
Confidence 37899999999999986100 000111122222 0001110 121110 0000000 011
Q ss_pred EEEE----EEecCC----CCeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEEEecCCCCCCceEEEEEEEEc----
Q 048642 693 LSRK----LKNVGS----PSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWTD---- 760 (782)
Q Consensus 693 ~~~t----v~n~~~----~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~G~i~~~~---- 760 (782)
+++- +.|--. ...|.+.+.-...-.+--.|+.+-+ .++.+.|.|+|++.. ...+.++++|.--|
T Consensus 599 ~~i~VePiF~~~~e~~keki~Fe~~L~L~st~pwVq~p~~l~l--~~~~R~i~VrVDpt~--l~~G~hy~eV~gyD~~~p 674 (1304)
T KOG1114|consen 599 HTIGVEPIFENGEENEKEKISFEVQLSLASTQPWVQCPEYLML--ANQGRGINVRVDPTG--LAPGVHYTEVLGYDTANP 674 (1304)
T ss_pred cceeccccccCccccccccccceeeEeeecCCcceeCchhhee--ccCCceeEEEECCcC--CCCCcceEEEEEeecCCc
Confidence 1111 111110 1122222221111123334777776 466789999999875 66677778888654
Q ss_pred -CCcEEEEEEEEEEccc
Q 048642 761 -GKHYVRSPIVVNQAQA 776 (782)
Q Consensus 761 -~~~~v~~P~~~~~~~~ 776 (782)
-++..|||+.|..+.-
T Consensus 675 ~~gplFrIPVTVi~P~~ 691 (1304)
T KOG1114|consen 675 SRGPLFRIPVTVIKPKV 691 (1304)
T ss_pred ccCceEEeeeEEEcccc
Confidence 2689999999876543
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.97 E-value=5.1e-31 Score=272.90 Aligned_cols=197 Identities=36% Similarity=0.504 Sum_probs=158.5
Q ss_pred CCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhh-hCCCeEEE
Q 048642 220 TARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAI-HDGVDVIS 298 (782)
Q Consensus 220 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~-~~g~dVIn 298 (782)
...+..+||||||++|++...+ ....|+||+++|+.+|+.... +......+++++++++ ..+++|||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~---------~~~~g~a~~a~i~~~~~~~~~---~~~~~~~~~~ai~~~~~~~~~~iin 106 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANN---------GGGVGVAPGAKLIPVKVLDGD---GSGSSSDIAAAIDYAAADQGADVIN 106 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCC---------CCCEEeCCCCEEEEEEEecCC---CCcCHHHHHHHHHHHHhccCCCEEE
Confidence 4557889999999999998522 222899999999999998766 2467888999999999 89999999
Q ss_pred EccCCCCCCCCCCHHHHHHHHHHhc-CcEEEEecCCCCCCCC---cccCCCCcEEEEccccCCccceeeEEecCCeEEee
Q 048642 299 VSLGGDPADYFNDGTAIGAFHAVKH-GIVVVCSAANSGPELG---TVTNVSPWIITVGASTLDREFQNFVELRNGQRFKG 374 (782)
Q Consensus 299 ~SlG~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~~p~vitVgas~~~~~~~~~~~~~~~~~~~g 374 (782)
||||..... ....+...+.++.++ |+++|+||||.+.... ..+...+++|+||+++...
T Consensus 107 ~S~g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~---------------- 169 (241)
T cd00306 107 LSLGGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG---------------- 169 (241)
T ss_pred eCCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC----------------
Confidence 999998332 345567777778777 9999999999997765 4566789999999865432
Q ss_pred eeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCC
Q 048642 375 TSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 375 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccc-cccCCCCCCCCCCCcCCeEEeCCc
Q 048642 455 SGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMA-SFSSAGPNKITPEILKPDITAPGV 533 (782)
Q Consensus 455 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSs~Gp~~~~~~~~KPDI~APG~ 533 (782)
... .++++|+ |||+.|||.
T Consensus 170 ----------------------------------------------------~~~~~~~~~~~--------~~~~~apg~ 189 (241)
T cd00306 170 ----------------------------------------------------TPASPSSNGGA--------GVDIAAPGG 189 (241)
T ss_pred ----------------------------------------------------CccCCcCCCCC--------CceEEeCcC
Confidence 111 4455554 569999999
Q ss_pred eEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 048642 534 NIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTT 596 (782)
Q Consensus 534 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~T 596 (782)
++.+.... ....+..++|||||||+|||++||++|++|++++.++|++|++|
T Consensus 190 ~~~~~~~~-----------~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 190 DILSSPTT-----------GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred CccCcccC-----------CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 99875111 12388999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5e-24 Score=245.00 Aligned_cols=274 Identities=31% Similarity=0.424 Sum_probs=199.2
Q ss_pred CCCcccc--CCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccc
Q 048642 135 SSSAWGK--GRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHN 212 (782)
Q Consensus 135 ~~~~w~~--~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~ 212 (782)
....|.. +.+|+||+|+|||+||+..||+|.+.. ...++|.++
T Consensus 129 ~~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~--------------------------~~~~~~~~~--------- 173 (508)
T COG1404 129 VGALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSA--------------------------VAGGDFVDG--------- 173 (508)
T ss_pred cccccccccCCCCCCeEEEEeccCCCCCChhhhccc--------------------------ccccccccC---------
Confidence 4567887 889999999999999999999998641 001122211
Q ss_pred ccccCCC-CCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhh
Q 048642 213 ISVNFNN-TARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIH 291 (782)
Q Consensus 213 ~~~~~~~-~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~ 291 (782)
... ...|..+|||||+|++++.... +.....|+||+++++.+|++.... |.....+++++|+++++
T Consensus 174 ----~~~~~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~~~~--g~~~~~~~~~~i~~~~~ 240 (508)
T COG1404 174 ----DPEPPFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLGSGG--GSGELSDVAEGIEGAAN 240 (508)
T ss_pred ----CCCCCCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEeccCCC--CcccHHHHHHHHHHHHh
Confidence 111 2568999999999999984211 123458999999999999998653 36778888999999999
Q ss_pred CC--CeEEEEccCCCCCCCCCCHHHHHHHHHHhcC-cEEEEecCCCCCCCCc----ccCCC--CcEEEEccccCCcccee
Q 048642 292 DG--VDVISVSLGGDPADYFNDGTAIGAFHAVKHG-IVVVCSAANSGPELGT----VTNVS--PWIITVGASTLDREFQN 362 (782)
Q Consensus 292 ~g--~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g~~~~~----~~~~~--p~vitVgas~~~~~~~~ 362 (782)
.+ +++||||+|..........+..++..++..| +++|+++||.+..... .+... +.+++||+.+.
T Consensus 241 ~~~~~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~------ 314 (508)
T COG1404 241 LGGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL------ 314 (508)
T ss_pred cCCCCcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC------
Confidence 99 9999999998512223445666666777777 9999999999866421 11111 35666665321
Q ss_pred eEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHc
Q 048642 363 FVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVA 442 (782)
Q Consensus 363 ~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~ 442 (782)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCCCCC
Q 048642 443 GAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKITPE 522 (782)
Q Consensus 443 Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~ 522 (782)
.+.++.||++|+..
T Consensus 315 --------------------------------------------------------------~~~~~~~s~~g~~~---- 328 (508)
T COG1404 315 --------------------------------------------------------------SDTVASFSNDGSPT---- 328 (508)
T ss_pred --------------------------------------------------------------CCccccccccCCCC----
Confidence 14678899999741
Q ss_pred CcCCeEEeCCceEEE-----eecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCC-CCCHHHHHHHHHhc
Q 048642 523 ILKPDITAPGVNIIA-----AFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHP-DWSPSAIRSAIMTT 596 (782)
Q Consensus 523 ~~KPDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p-~~sp~~ik~~L~~T 596 (782)
..+++|||.+|.+ ++++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..+
T Consensus 329 --~~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~ 395 (508)
T COG1404 329 --GVDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTT 395 (508)
T ss_pred --CcceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhc
Confidence 2299999999988 554431 2499999999999999999999999999 89999999998888
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccccccCccccCC
Q 048642 597 ARTRDNTANPMRDGSFKKATPFSYGSGHIRPNRAMD 632 (782)
Q Consensus 597 A~~~~~~g~~~~~~~~~~~~~~~~G~G~vd~~~A~~ 632 (782)
+.. .. .......++.|..+...+..
T Consensus 396 ~~~-~~----------~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 396 AGL-TP----------LSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred ccc-cc----------CCccccccccCccccccccc
Confidence 763 00 01124456666665555444
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=7.4e-24 Score=214.92 Aligned_cols=300 Identities=19% Similarity=0.258 Sum_probs=184.9
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
...+|..+++|++|++||+|.||||-|||++.+ +|. -..++|... +|.+
T Consensus 150 v~~awa~g~tgknvttaimddgvdymhpdlk~n----------------------yna--easydfssn-----dpfp-- 198 (629)
T KOG3526|consen 150 VAEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN----------------------YNA--EASYDFSSN-----DPFP-- 198 (629)
T ss_pred HHHHHhhcccCCCceEEeecCCchhcCcchhcc----------------------cCc--eeecccccC-----CCCC--
Confidence 567999999999999999999999999999743 111 112233211 1111
Q ss_pred ccCCCCCCC--CCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhh-
Q 048642 215 VNFNNTARD--HEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIH- 291 (782)
Q Consensus 215 ~~~~~~~~d--~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~- 291 (782)
++...| .+.|||.|||-+++...++ .+| .|||.+.++..+|+++. ....++++|-....+
T Consensus 199 ---yprytddwfnshgtrcagev~aardng--icg------vgvaydskvagirmldq------pymtdlieansmghep 261 (629)
T KOG3526|consen 199 ---YPRYTDDWFNSHGTRCAGEVVAARDNG--ICG------VGVAYDSKVAGIRMLDQ------PYMTDLIEANSMGHEP 261 (629)
T ss_pred ---CCcccchhhhccCccccceeeeeccCC--cee------eeeeeccccceeeecCC------chhhhhhhhcccCCCC
Confidence 111112 5789999999988876443 344 59999999999999974 466777776444332
Q ss_pred CCCeEEEEccCCCCC-CCCC---CHHHHHHHHHHh-----cCcEEEEecCCCCCC-CCcc--cCCCCcEEEEccccCCcc
Q 048642 292 DGVDVISVSLGGDPA-DYFN---DGTAIGAFHAVK-----HGIVVVCSAANSGPE-LGTV--TNVSPWIITVGASTLDRE 359 (782)
Q Consensus 292 ~g~dVIn~SlG~~~~-~~~~---~~~~~a~~~a~~-----~Gi~vV~AAGN~g~~-~~~~--~~~~p~vitVgas~~~~~ 359 (782)
..++|.+-|||.... ...+ ++..+++-+-++ .|-+.|.|+|..|.. .+.. ...+-|.|++-+.-.+.+
T Consensus 262 ~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaindg~ 341 (629)
T KOG3526|consen 262 SKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAINDGE 341 (629)
T ss_pred ceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcCCc
Confidence 467999999998732 2222 223333333332 456899999988743 1222 223456666654211110
Q ss_pred ceeeEEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHH
Q 048642 360 FQNFVELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQA 439 (782)
Q Consensus 360 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~ 439 (782)
.....+.|.
T Consensus 342 -----------------------------------------nahydescs------------------------------ 350 (629)
T KOG3526|consen 342 -----------------------------------------NAHYDESCS------------------------------ 350 (629)
T ss_pred -----------------------------------------cccccchhh------------------------------
Confidence 001112222
Q ss_pred HHcCceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCCC
Q 048642 440 AVAGAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNKI 519 (782)
Q Consensus 440 ~~~Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~ 519 (782)
.-..+.||+-|..+
T Consensus 351 -----------------------------------------------------------------stlastfsng~rnp- 364 (629)
T KOG3526|consen 351 -----------------------------------------------------------------STLASTFSNGGRNP- 364 (629)
T ss_pred -----------------------------------------------------------------HHHHHHhhcCCcCC-
Confidence 11345677766443
Q ss_pred CCCCcCCeEEeCCceEEEeecCCCCCCCCCCCCCCcceeeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 048642 520 TPEILKPDITAPGVNIIAAFTGAIGATELPYDTRRIPYNIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSAIMTTART 599 (782)
Q Consensus 520 ~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~L~~TA~~ 599 (782)
+- |+. .+ |-+.......||||.|||-.||+.||.++++|.|+..+++.+-.-|+++
T Consensus 365 -------et---gva--tt------------dlyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskr 420 (629)
T KOG3526|consen 365 -------ET---GVA--TT------------DLYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKR 420 (629)
T ss_pred -------Cc---cee--ee------------ccccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeeccc
Confidence 11 111 11 1112255678999999999999999999999999999999988888766
Q ss_pred ccCCC--CC--CCCCCCCCCCCCcccccccCccccCCCCccccCCcch
Q 048642 600 RDNTA--NP--MRDGSFKKATPFSYGSGHIRPNRAMDPGLVYDLSEDD 643 (782)
Q Consensus 600 ~~~~g--~~--~~~~~~~~~~~~~~G~G~vd~~~A~~~~lv~~~~~~~ 643 (782)
..-.. .. +.-..-....+..+|+|.+|+.+-+....-+...+.-
T Consensus 421 nslfd~~~rf~w~mngvglefnhlfgfgvldagamv~lak~wktvppr 468 (629)
T KOG3526|consen 421 NSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAMVMLAKAWKTVPPR 468 (629)
T ss_pred chhhcccceEEEeccccceeeecccccccccHHHHHHHHHHhccCCCc
Confidence 32110 00 0011123445678999999998877655545444433
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.72 E-value=3.6e-17 Score=179.33 Aligned_cols=101 Identities=25% Similarity=0.276 Sum_probs=79.5
Q ss_pred CcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhC---CCeEEEEccCCCCCCC---CCCHHHHHHHHHHhcC
Q 048642 251 GTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHD---GVDVISVSLGGDPADY---FNDGTAIGAFHAVKHG 324 (782)
Q Consensus 251 ~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~---g~dVIn~SlG~~~~~~---~~~~~~~a~~~a~~~G 324 (782)
..+.||||+|+|+.|++++. ....++.++.+++.+ +++|||+|||...... +.+.+..++.+|..+|
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~-------~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~G 153 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGT-------VTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQG 153 (361)
T ss_pred HHHHhccCCCeEEEEEECCc-------CccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCC
Confidence 45689999999999999753 245577888888877 9999999999983221 2355777778889999
Q ss_pred cEEEEecCCCCCCCC-----------cccCCCCcEEEEccccCCc
Q 048642 325 IVVVCSAANSGPELG-----------TVTNVSPWIITVGASTLDR 358 (782)
Q Consensus 325 i~vV~AAGN~g~~~~-----------~~~~~~p~vitVgas~~~~ 358 (782)
|+||+|+||+|.... ..+...|+|++||+++...
T Consensus 154 itvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 154 ITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred eEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 999999999997653 2345689999999987654
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.30 E-value=1.6e-11 Score=116.43 Aligned_cols=117 Identities=30% Similarity=0.359 Sum_probs=90.5
Q ss_pred CcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccccC-
Q 048642 384 DTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITAD- 462 (782)
Q Consensus 384 ~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~- 462 (782)
....++++.+ .|...++...+++|||+||+|+.|.+.+|..+++++||.++|++|+..........
T Consensus 25 ~~~~~lv~~g-------------~g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~ 91 (143)
T cd02133 25 GKTYELVDAG-------------LGTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGE 91 (143)
T ss_pred CcEEEEEEcc-------------CCchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCC
Confidence 3466777733 35556676778999999999999999999999999999999999987542222111
Q ss_pred CCcccEEEEehhhHHHHHHHHhcCCCceEEEecCeeeccCCCCCccccccCCCCCC
Q 048642 463 PHFLPASQITYKDGVKVLDYIKSSDNPMGYITSPSTYLNAKPSPFMASFSSAGPNK 518 (782)
Q Consensus 463 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 518 (782)
...+|+++|+.++|+.|.+++++ .+++.+..+.. ..+.+.++.||||||..
T Consensus 92 ~~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 92 AVFIPVVFISKEDGEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred CCeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 24689999999999999999988 44555444444 45667899999999963
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.28 E-value=4e-11 Score=111.39 Aligned_cols=123 Identities=45% Similarity=0.740 Sum_probs=98.7
Q ss_pred EEecCCeEEeeeeccCCCCCCcccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCc-chhhhhHHHHHc
Q 048642 364 VELRNGQRFKGTSLSKSLPNDTFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDT-ARVDKGRQAAVA 442 (782)
Q Consensus 364 ~~~~~~~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~-~~~~~~~~~~~~ 442 (782)
++++|+..+.|++++.... ..+++++.... ........|.+..+...+++||||||+|+.| .+.+|..+++++
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~----~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~ 75 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSAN----SGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAA 75 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCc----CCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHc
Confidence 6789999999999996554 45677763221 1234457899888888999999999999999 999999999999
Q ss_pred CceEEEEeccCCCCCccccCCCcccEEEEehhhHHHHHHHHhcCCCceEE
Q 048642 443 GAVGMILCNDKSSGNEITADPHFLPASQITYKDGVKVLDYIKSSDNPMGY 492 (782)
Q Consensus 443 Ga~g~i~~n~~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 492 (782)
||.|+|++++.............+|.+.|+.++|+.|++|++++.+++++
T Consensus 76 GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 76 GGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred CCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999999987643333333567999999999999999999988766554
No 46
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.90 E-value=3.2e-09 Score=90.47 Aligned_cols=78 Identities=35% Similarity=0.560 Sum_probs=58.1
Q ss_pred eEEEEeCCCCCCCCccccccccchhhHHHHHHHhhCCc----ccccccEeEEeccceeeEEEEcCHHHHHHHhCCCCeEE
Q 048642 32 SYVVYLGSHAHGPEVTTADLDRVTDSHHEFLGSFLGST----EKARDAIFYSYQNHINGFAATLEEEEAAEIAKHPDVVS 107 (782)
Q Consensus 32 ~yiV~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~p~V~~ 107 (782)
+|||+|++.... ......+.+++.+++.+. .....++.+.|...||||+++++++++++|+++|+|++
T Consensus 1 ~YIV~~k~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~ 72 (82)
T PF05922_consen 1 RYIVVFKDDASA--------ASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKS 72 (82)
T ss_dssp EEEEEE-TTSTH--------HCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEE
T ss_pred CEEEEECCCCCc--------chhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEE
Confidence 699999998664 234667777777554321 23567899999999999999999999999999999999
Q ss_pred EEeccccccc
Q 048642 108 IFPNKGKKLH 117 (782)
Q Consensus 108 V~~~~~~~~~ 117 (782)
|+||+.++++
T Consensus 73 Ve~D~~v~l~ 82 (82)
T PF05922_consen 73 VEPDQVVSLH 82 (82)
T ss_dssp EEEECEEEE-
T ss_pred EEeCceEecC
Confidence 9999988764
No 47
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.87 E-value=1.2e-08 Score=92.08 Aligned_cols=83 Identities=23% Similarity=0.382 Sum_probs=69.6
Q ss_pred ccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCc--cc--cCCCcccEEEEehhhHHH
Q 048642 403 TAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNE--IT--ADPHFLPASQITYKDGVK 478 (782)
Q Consensus 403 ~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~~--~~~~~~p~~~i~~~~g~~ 478 (782)
+....|...++...+++|||+|++||.|+|.+|..+++++||.++|++|+...... .. .....||+++|+.++|+.
T Consensus 28 ~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~ 107 (120)
T cd02129 28 TSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLD 107 (120)
T ss_pred CCcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHH
Confidence 44578999998888999999999999999999999999999999999998753111 11 133568999999999999
Q ss_pred HHHHHhc
Q 048642 479 VLDYIKS 485 (782)
Q Consensus 479 l~~~~~~ 485 (782)
|.+.+.+
T Consensus 108 i~~~l~~ 114 (120)
T cd02129 108 IQQTFGD 114 (120)
T ss_pred HHHHhcc
Confidence 9988864
No 48
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.86 E-value=1.4e-08 Score=94.98 Aligned_cols=91 Identities=20% Similarity=0.199 Sum_probs=74.8
Q ss_pred ccccccCCCCC--CCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccc----cCCCcccEEEEehhhH
Q 048642 403 TAASLCKNGAL--DHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEIT----ADPHFLPASQITYKDG 476 (782)
Q Consensus 403 ~~~~~c~~~~~--~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~g 476 (782)
.....|.+... .+.++.|+|+|++||.|+|.+|..+++++||.++|+||+...+.... .....+|+++|+..+|
T Consensus 42 ~~~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G 121 (138)
T cd02122 42 NDHYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKG 121 (138)
T ss_pred CCcCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHH
Confidence 34578998776 56789999999999999999999999999999999999986322221 1124689999999999
Q ss_pred HHHHHHHhcCCCceEEE
Q 048642 477 VKVLDYIKSSDNPMGYI 493 (782)
Q Consensus 477 ~~l~~~~~~~~~~~~~i 493 (782)
+.|++++..+.+.+++|
T Consensus 122 ~~l~~~l~~G~~Vtv~~ 138 (138)
T cd02122 122 MEILELLERGISVTMVI 138 (138)
T ss_pred HHHHHHHHcCCcEEEeC
Confidence 99999999987766543
No 49
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.85 E-value=1.3e-08 Score=93.65 Aligned_cols=88 Identities=26% Similarity=0.328 Sum_probs=72.9
Q ss_pred ccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCc---ccc--CCCcccEEEEehhhHHHH
Q 048642 405 ASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNE---ITA--DPHFLPASQITYKDGVKV 479 (782)
Q Consensus 405 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~---~~~--~~~~~p~~~i~~~~g~~l 479 (782)
...|.+..+...+++|||+||+||.|.|.+|..+++++||.++|++|+...... ... ....+|+++|+.++|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 467998888888999999999999999999999999999999999998663211 111 234699999999999999
Q ss_pred HHHHhcCCCceEE
Q 048642 480 LDYIKSSDNPMGY 492 (782)
Q Consensus 480 ~~~~~~~~~~~~~ 492 (782)
++++..+.+.+++
T Consensus 109 ~~~l~~g~~v~~~ 121 (122)
T cd04816 109 RRRLGAGETLELD 121 (122)
T ss_pred HHHHcCCCEEEEe
Confidence 9999888665443
No 50
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.84 E-value=1.8e-08 Score=91.60 Aligned_cols=89 Identities=19% Similarity=0.260 Sum_probs=72.8
Q ss_pred ccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCC-CCcc---cc----CCCcccEEEEehhhH
Q 048642 405 ASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSS-GNEI---TA----DPHFLPASQITYKDG 476 (782)
Q Consensus 405 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~~~---~~----~~~~~p~~~i~~~~g 476 (782)
...|.+... ..+++|||+|++||.|+|.+|..+++++||.++|+||+... .... .. ....+|+++|+..+|
T Consensus 21 ~~gC~~~~~-~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELRN-IHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCCC-ccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 467987543 56899999999999999999999999999999999998653 1111 12 234799999999999
Q ss_pred HHHHHHHhcCCCceEEEe
Q 048642 477 VKVLDYIKSSDNPMGYIT 494 (782)
Q Consensus 477 ~~l~~~~~~~~~~~~~i~ 494 (782)
+.|++.+..+..+++.|.
T Consensus 100 ~~L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 100 YMIRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHHHcCCceEEeee
Confidence 999999999988877653
No 51
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.75 E-value=4.7e-08 Score=89.52 Aligned_cols=89 Identities=24% Similarity=0.241 Sum_probs=71.8
Q ss_pred ccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccc----cCCCcccEEEEehhhHHH
Q 048642 403 TAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEIT----ADPHFLPASQITYKDGVK 478 (782)
Q Consensus 403 ~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~----~~~~~~p~~~i~~~~g~~ 478 (782)
.....|.+.... .+++|||+||+|+.|.|.+|..+++++||.++|++|+........ .....+|+++|+.++|..
T Consensus 25 ~~~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~ 103 (118)
T cd04818 25 SNTDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDA 103 (118)
T ss_pred CcccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHH
Confidence 345689888763 469999999999999999999999999999999999876421111 123469999999999999
Q ss_pred HHHHHhcCCCceEE
Q 048642 479 VLDYIKSSDNPMGY 492 (782)
Q Consensus 479 l~~~~~~~~~~~~~ 492 (782)
|++|++.+...+++
T Consensus 104 l~~~l~~g~~v~v~ 117 (118)
T cd04818 104 LKAALAAGGTVTVT 117 (118)
T ss_pred HHHHHhcCCcEEEe
Confidence 99999987765543
No 52
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.74 E-value=1.1e-07 Score=87.51 Aligned_cols=86 Identities=22% Similarity=0.334 Sum_probs=69.9
Q ss_pred cccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCc--c--ccCCCcccEEEEehhhHHHHHH
Q 048642 406 SLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNE--I--TADPHFLPASQITYKDGVKVLD 481 (782)
Q Consensus 406 ~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~--~--~~~~~~~p~~~i~~~~g~~l~~ 481 (782)
..|.+..+ +.+++|||+|++||.|.|.+|..+++++||.++|+||+...+.. . ......+|+++|+.++|+.|++
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 46887655 35799999999999999999999999999999999998732211 1 1123569999999999999999
Q ss_pred HHhcCCCceEE
Q 048642 482 YIKSSDNPMGY 492 (782)
Q Consensus 482 ~~~~~~~~~~~ 492 (782)
.++++.+.+++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99988776554
No 53
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.73 E-value=5.4e-08 Score=89.88 Aligned_cols=86 Identities=31% Similarity=0.431 Sum_probs=69.3
Q ss_pred ccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCC----Cc---ccc-----CCCcccEEEEe
Q 048642 405 ASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSG----NE---ITA-----DPHFLPASQIT 472 (782)
Q Consensus 405 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~----~~---~~~-----~~~~~p~~~i~ 472 (782)
...|.+..+ +.+++|||+|++||.|+|.+|..+++++||.++|++|+.... .. +.. +...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467987654 557899999999999999999999999999999999876531 01 111 23578999999
Q ss_pred hhhHHHHHHHHhcCCCceE
Q 048642 473 YKDGVKVLDYIKSSDNPMG 491 (782)
Q Consensus 473 ~~~g~~l~~~~~~~~~~~~ 491 (782)
..+|+.|++++..+...++
T Consensus 106 ~~dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHHHhCCceEE
Confidence 9999999999988766544
No 54
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.72 E-value=1.7e-08 Score=89.65 Aligned_cols=80 Identities=35% Similarity=0.493 Sum_probs=64.6
Q ss_pred cccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCC----CCCccccCCCcccEEEEehhhHHHH
Q 048642 404 AASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKS----SGNEITADPHFLPASQITYKDGVKV 479 (782)
Q Consensus 404 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~----~~~~~~~~~~~~p~~~i~~~~g~~l 479 (782)
....|........+++||||||+||.|.|.+|..+++++||.|+|++|... ...........+|+++|+.++|+.|
T Consensus 18 ~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L 97 (101)
T PF02225_consen 18 DEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEAL 97 (101)
T ss_dssp ECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHH
T ss_pred CcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhh
Confidence 345677778889999999999999999999999999999999999999221 1122334457899999999999999
Q ss_pred HHHH
Q 048642 480 LDYI 483 (782)
Q Consensus 480 ~~~~ 483 (782)
++|+
T Consensus 98 ~~~i 101 (101)
T PF02225_consen 98 LAYI 101 (101)
T ss_dssp HHHH
T ss_pred hccC
Confidence 9875
No 55
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.66 E-value=1.1e-07 Score=88.22 Aligned_cols=88 Identities=25% Similarity=0.363 Sum_probs=72.1
Q ss_pred cccccCCCC--CCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCcc-c-----cCCCcccEEEEehhh
Q 048642 404 AASLCKNGA--LDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEI-T-----ADPHFLPASQITYKD 475 (782)
Q Consensus 404 ~~~~c~~~~--~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-~-----~~~~~~p~~~i~~~~ 475 (782)
....|.... +...+++||||||+|+.|.+.+|..+++++||.|+|++++....... . .....+|++.|+.++
T Consensus 29 ~~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~ 108 (126)
T cd00538 29 PLVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYAD 108 (126)
T ss_pred ceEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHH
Confidence 345698877 77889999999999999999999999999999999999987632111 1 134579999999999
Q ss_pred HHHHHHHHhcCCCceE
Q 048642 476 GVKVLDYIKSSDNPMG 491 (782)
Q Consensus 476 g~~l~~~~~~~~~~~~ 491 (782)
|..|.+++.++.+.++
T Consensus 109 g~~l~~~~~~~~~v~~ 124 (126)
T cd00538 109 GEALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHHhcCCceEE
Confidence 9999999998665443
No 56
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.64 E-value=1.3e-07 Score=88.89 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=68.6
Q ss_pred ccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCccc------cCCCcccEEEEehhhHHH
Q 048642 405 ASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEIT------ADPHFLPASQITYKDGVK 478 (782)
Q Consensus 405 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~------~~~~~~p~~~i~~~~g~~ 478 (782)
...|.+.. .+++|||+|++||.|+|.+|..+++++||.++|+||+........ .....||+++|+..+|+.
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 46798764 379999999999999999999999999999999999765321111 113579999999999999
Q ss_pred HHHHHhcCCCceE
Q 048642 479 VLDYIKSSDNPMG 491 (782)
Q Consensus 479 l~~~~~~~~~~~~ 491 (782)
|++++..+...+.
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999998776544
No 57
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.63 E-value=1.2e-07 Score=88.04 Aligned_cols=75 Identities=24% Similarity=0.363 Sum_probs=62.0
Q ss_pred CCCCCCccceEEEEeeCCcc-----hhhhhHHHHHcCceEEEEeccCCC-CC--ccccC---CCcccEEEEehhhHHHHH
Q 048642 412 ALDHEKVKGKILVCLRGDTA-----RVDKGRQAAVAGAVGMILCNDKSS-GN--EITAD---PHFLPASQITYKDGVKVL 480 (782)
Q Consensus 412 ~~~~~~~~gkivl~~~g~~~-----~~~~~~~~~~~Ga~g~i~~n~~~~-~~--~~~~~---~~~~p~~~i~~~~g~~l~ 480 (782)
++.+.+++|||+|++||.|. |.+|.++++++||.++|+||+... +. ....+ ...+|+++|+.++|+.|+
T Consensus 49 d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~ 128 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALL 128 (139)
T ss_pred cccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHH
Confidence 45567899999999999999 999999999999999999999731 21 12222 358999999999999999
Q ss_pred HHHhcC
Q 048642 481 DYIKSS 486 (782)
Q Consensus 481 ~~~~~~ 486 (782)
+.+..+
T Consensus 129 ~~l~~~ 134 (139)
T cd04817 129 AALGQS 134 (139)
T ss_pred HHhcCC
Confidence 988654
No 58
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.61 E-value=3.2e-07 Score=83.13 Aligned_cols=88 Identities=24% Similarity=0.357 Sum_probs=61.1
Q ss_pred EEeeccCceEEEEEEEEecCC-CCeEEEEEeC--------CCC----------c-eEEEEecEEEEccCCcEEEEEEEEE
Q 048642 682 ISVPMISGSVTLSRKLKNVGS-PSNYAASVRE--------PLG----------I-SVSVEPKILAFKKIGEEKSFKVTLK 741 (782)
Q Consensus 682 ~~~~~~~~~~t~~~tv~n~~~-~~ty~~~~~~--------~~g----------~-~v~v~p~~~~~~~~~~~~~~~vt~~ 741 (782)
|+|++.....+++++|+|.|+ ..+|+++... ..| . .+...|.++++ ++|++++|+|+++
T Consensus 1 i~L~d~~~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~ 79 (112)
T PF06280_consen 1 ISLKDTGNKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTIT 79 (112)
T ss_dssp EEEEEE-SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE
T ss_pred CCccccCCceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEE
Confidence 345666667999999999999 9999998661 111 1 57778899999 8899999999999
Q ss_pred ecCCC--CCCceEEEEEEEEcC-C-cEEEEEEE
Q 048642 742 PKWSG--APDNYRFGELTWTDG-K-HYVRSPIV 770 (782)
Q Consensus 742 ~~~~~--~~~~~~~G~i~~~~~-~-~~v~~P~~ 770 (782)
+++.. ..+.+++|+|.+++. . +.++|||+
T Consensus 80 ~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 80 PPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp --GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 85422 447899999999874 4 48999997
No 59
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.59 E-value=2.2e-07 Score=85.67 Aligned_cols=89 Identities=19% Similarity=0.140 Sum_probs=69.1
Q ss_pred cccccCCCCCC--CC----CccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCc-c----------ccCCCcc
Q 048642 404 AASLCKNGALD--HE----KVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNE-I----------TADPHFL 466 (782)
Q Consensus 404 ~~~~c~~~~~~--~~----~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~-~----------~~~~~~~ 466 (782)
+...|.+.... +. ...++|+|++||.|+|.+|..+|+++||.++|++|+.+.... . ......+
T Consensus 21 ~~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~I 100 (127)
T cd02125 21 NRTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITI 100 (127)
T ss_pred ccccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceE
Confidence 45678876442 22 378899999999999999999999999999999998653111 1 0112368
Q ss_pred cEEEEehhhHHHHHHHHhcCCCceEE
Q 048642 467 PASQITYKDGVKVLDYIKSSDNPMGY 492 (782)
Q Consensus 467 p~~~i~~~~g~~l~~~~~~~~~~~~~ 492 (782)
|+++|+.++|+.|+..+..+...+++
T Consensus 101 P~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 101 PSALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred eEEEECHHHHHHHHHHHhcCCeEEEe
Confidence 99999999999999999988766543
No 60
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.59 E-value=2.5e-07 Score=85.49 Aligned_cols=89 Identities=22% Similarity=0.261 Sum_probs=69.2
Q ss_pred ccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCcc-ccCCCcccEEEEehhhHHHHHH
Q 048642 403 TAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEI-TADPHFLPASQITYKDGVKVLD 481 (782)
Q Consensus 403 ~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-~~~~~~~p~~~i~~~~g~~l~~ 481 (782)
.....|.+...+..+++|||+|++||.|.|.+|..+++++||.++|+||+....... ......+|.+.+ .++|+.|++
T Consensus 39 ~~~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~ 117 (129)
T cd02124 39 VADDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWID 117 (129)
T ss_pred CCcccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHH
Confidence 345689977666568999999999999999999999999999999999987543222 222334566666 999999999
Q ss_pred HHhcCCCceEE
Q 048642 482 YIKSSDNPMGY 492 (782)
Q Consensus 482 ~~~~~~~~~~~ 492 (782)
.++.+...+++
T Consensus 118 ~l~~G~~vtv~ 128 (129)
T cd02124 118 ALAAGSNVTVD 128 (129)
T ss_pred HHhcCCeEEEe
Confidence 99887665443
No 61
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.56 E-value=2.5e-07 Score=83.88 Aligned_cols=82 Identities=22% Similarity=0.301 Sum_probs=66.1
Q ss_pred ccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCC-C-ccc----cCCCcccEEEEehhhH
Q 048642 403 TAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSG-N-EIT----ADPHFLPASQITYKDG 476 (782)
Q Consensus 403 ~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-~-~~~----~~~~~~p~~~i~~~~g 476 (782)
.....|.+. +..+++|||+|++||.|+|.+|..+++++||.++|++|+.... . .+. .....+|+++|+.++|
T Consensus 25 ~p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g 102 (117)
T cd04813 25 SPTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSY 102 (117)
T ss_pred CCCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHH
Confidence 345789766 5588999999999999999999999999999999999876532 1 111 2234799999999999
Q ss_pred HHHHHHHhcC
Q 048642 477 VKVLDYIKSS 486 (782)
Q Consensus 477 ~~l~~~~~~~ 486 (782)
+.|+.++...
T Consensus 103 ~~L~~l~~~~ 112 (117)
T cd04813 103 HLLSSLLPKS 112 (117)
T ss_pred HHHHHhcccc
Confidence 9999877643
No 62
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=3.9e-07 Score=101.09 Aligned_cols=156 Identities=17% Similarity=0.208 Sum_probs=97.8
Q ss_pred CCCccccCCCCCceEEEEecCCcCcCCCCccCCCCCCCCCCccccccCCCCCcccccccccccccchhhHhhhccccccc
Q 048642 135 SSSAWGKGRFGEDIIIANLDTGVWPESKSFSDEGYGPVPSRWKGTCQNSTKEGVRCNRKLIGARYFNRAYAAYVKQHNIS 214 (782)
Q Consensus 135 ~~~~w~~~~~G~gV~VaVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~ 214 (782)
....|..+++|+++.++|.|.|+...||+.... +. ..+..++... ...+.
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-~~-----------------------~~~s~d~~~~------~~~p~ 71 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-YD-----------------------PLGSYDVNRH------DNDPE 71 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-cC-----------------------cceeEeeecC------CCCcc
Confidence 468999999999999999999999999998753 11 1111121111 00000
Q ss_pred ccCCCCCCCCCCccchhhhhhhccCCCCccccccCCCcceecCccccccccccccCCCCCCCCChhHHHHHHHHhhh-CC
Q 048642 215 VNFNNTARDHEGHGTHTLSTAGGNLVPGVNVFGMGNGTAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIH-DG 293 (782)
Q Consensus 215 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~-~g 293 (782)
.-.+......|||-||+-.+....+ ..-..|+++++++..++++... ..+...+...... .-
T Consensus 72 --~~~~~~~~~~~g~~Ca~~~a~~~~~--------~~C~vg~~~~~~~~g~~~l~~~-------v~~~~~~~~~~~~~~~ 134 (431)
T KOG3525|consen 72 --PRCDGTNENKHGTRCAGCVAARANN--------LTCGVGVAYNATIGGIRMLAGC-------VSDAVEAPSLGFGPCH 134 (431)
T ss_pred --cccCCCCccccCCCCCcccccccCC--------CcCCCCcccCccccceeeeeee-------cccceecccccCCCCC
Confidence 1112224588999999999988522 2234789999999999997633 1133333333332 35
Q ss_pred CeEEEEccCCCCC-CC---CCCHHHHHHHH-----HHhcCcEEEEecCCCCCC
Q 048642 294 VDVISVSLGGDPA-DY---FNDGTAIGAFH-----AVKHGIVVVCSAANSGPE 337 (782)
Q Consensus 294 ~dVIn~SlG~~~~-~~---~~~~~~~a~~~-----a~~~Gi~vV~AAGN~g~~ 337 (782)
++|-+.|||.... .. .......+... ...+|-+.|++.||.|..
T Consensus 135 ~di~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~ 187 (431)
T KOG3525|consen 135 IDIYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTC 187 (431)
T ss_pred ceeecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccc
Confidence 7999999998731 11 11222223333 236778999999998744
No 63
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.49 E-value=5.5e-07 Score=86.05 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=69.6
Q ss_pred ccccCCCCCCC---CCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCC-ccccC-----CCcccEEEEehhh
Q 048642 405 ASLCKNGALDH---EKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGN-EITAD-----PHFLPASQITYKD 475 (782)
Q Consensus 405 ~~~c~~~~~~~---~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~-~~~~~-----~~~~p~~~i~~~~ 475 (782)
...|.+....+ .++.|+|+|++||.|+|.+|..+|+++||.++|++|+..... ....+ ...+|+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 56798777644 889999999999999999999999999999999999865321 22221 3479999999999
Q ss_pred HHHHHHHHhcCCC
Q 048642 476 GVKVLDYIKSSDN 488 (782)
Q Consensus 476 g~~l~~~~~~~~~ 488 (782)
|+.|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999987654
No 64
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.3e-06 Score=100.73 Aligned_cols=95 Identities=19% Similarity=0.180 Sum_probs=57.8
Q ss_pred cceecCccccccccccccCCCCCCCCChhHHHHHHHHhhhCCC-eEEEEccCCCC---CCC--CCCHHHHHHHHHHhcCc
Q 048642 252 TAKGGSPKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGV-DVISVSLGGDP---ADY--FNDGTAIGAFHAVKHGI 325 (782)
Q Consensus 252 ~~~GvAP~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~-dVIn~SlG~~~---~~~--~~~~~~~a~~~a~~~Gi 325 (782)
...-+||+|+|..+-.-. .....+..|+.+-..+=+ -+|-.||+... ... .-+.+......|..+||
T Consensus 287 ~s~A~AP~A~I~lvvap~-------~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGI 359 (1174)
T COG4934 287 WSHAMAPKANIDLVVAPN-------PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGI 359 (1174)
T ss_pred hhhccCccCceEEEEcCC-------CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccce
Confidence 345679999999987722 233333333333222111 34445666541 111 23344555567889999
Q ss_pred EEEEecCCCCCCCCc--------ccCCCCcEEEEcc
Q 048642 326 VVVCSAANSGPELGT--------VTNVSPWIITVGA 353 (782)
Q Consensus 326 ~vV~AAGN~g~~~~~--------~~~~~p~vitVga 353 (782)
.+++|+|.+|....+ .+..+|++++||.
T Consensus 360 Ti~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 360 TIFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EEEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 999999999865533 3346899999997
No 65
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.33 E-value=6.8e-06 Score=76.14 Aligned_cols=78 Identities=27% Similarity=0.399 Sum_probs=63.1
Q ss_pred CCCCCCCccceEEEEeeCCc--chhhhhHHHHHcCceEEEEeccCCCCCcc-----c--cCCCcccEEEEehhhHHHHHH
Q 048642 411 GALDHEKVKGKILVCLRGDT--ARVDKGRQAAVAGAVGMILCNDKSSGNEI-----T--ADPHFLPASQITYKDGVKVLD 481 (782)
Q Consensus 411 ~~~~~~~~~gkivl~~~g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~-----~--~~~~~~p~~~i~~~~g~~l~~ 481 (782)
.++...+++|||+|++++.+ .+..|..++.++||.++|++|+....... . .....+|++.|+.++|+.|.+
T Consensus 36 ~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP~v~Is~edg~~L~~ 115 (127)
T cd04819 36 KDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIPAASVSGEDGLRLAR 115 (127)
T ss_pred HHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCCEEEEeHHHHHHHHH
Confidence 34556789999999999999 88999999999999999999876542211 1 223579999999999999999
Q ss_pred HHhcCCC
Q 048642 482 YIKSSDN 488 (782)
Q Consensus 482 ~~~~~~~ 488 (782)
.++.+..
T Consensus 116 ~l~~g~~ 122 (127)
T cd04819 116 VAERNDT 122 (127)
T ss_pred HHhcCCc
Confidence 9987543
No 66
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=97.65 E-value=0.00018 Score=67.29 Aligned_cols=79 Identities=19% Similarity=0.117 Sum_probs=62.1
Q ss_pred CCCCCccceEEEEeeCCc------chhhh-------hHHHHHcCceEEEEeccCCC-------CCccc-cCCCcccEEEE
Q 048642 413 LDHEKVKGKILVCLRGDT------ARVDK-------GRQAAVAGAVGMILCNDKSS-------GNEIT-ADPHFLPASQI 471 (782)
Q Consensus 413 ~~~~~~~gkivl~~~g~~------~~~~~-------~~~~~~~Ga~g~i~~n~~~~-------~~~~~-~~~~~~p~~~i 471 (782)
+...+++|||||+.++.| .|..| ...+.++||.++|++|.... |.... .....+|++.|
T Consensus 33 ~~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~i 112 (134)
T cd04815 33 APAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAI 112 (134)
T ss_pred cchhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEe
Confidence 345689999999999999 88888 69999999999999986422 21111 22346999999
Q ss_pred ehhhHHHHHHHHhcCCCceE
Q 048642 472 TYKDGVKVLDYIKSSDNPMG 491 (782)
Q Consensus 472 ~~~~g~~l~~~~~~~~~~~~ 491 (782)
+.+++..|...++.+..+..
T Consensus 113 s~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 113 SVEDADMLERLAARGKPIRV 132 (134)
T ss_pred chhcHHHHHHHHhCCCCeEE
Confidence 99999999999988765544
No 67
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=96.92 E-value=0.0023 Score=59.87 Aligned_cols=63 Identities=27% Similarity=0.256 Sum_probs=50.6
Q ss_pred cccceEecccccccCCCcccccccCCCCCCCCCccceEEEEeeCCc------------------chhhhhHHHHHcCceE
Q 048642 385 TFYPLITGLQAKAANADDTAASLCKNGALDHEKVKGKILVCLRGDT------------------ARVDKGRQAAVAGAVG 446 (782)
Q Consensus 385 ~~~pl~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~------------------~~~~~~~~~~~~Ga~g 446 (782)
...|+++.+... ....|...++...|++|||||+.++.| .+..|..++.++||.|
T Consensus 20 ~~aelVfvGyGi-------~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~g 92 (142)
T cd04814 20 KDAPLVFVGYGI-------KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAG 92 (142)
T ss_pred cceeeEEecCCc-------CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcE
Confidence 356777654321 234688889999999999999999877 4678999999999999
Q ss_pred EEEeccCC
Q 048642 447 MILCNDKS 454 (782)
Q Consensus 447 ~i~~n~~~ 454 (782)
+|++++..
T Consensus 93 vIii~~~~ 100 (142)
T cd04814 93 VLIVHELA 100 (142)
T ss_pred EEEEeCCC
Confidence 99999865
No 68
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=96.89 E-value=0.0022 Score=62.54 Aligned_cols=71 Identities=24% Similarity=0.368 Sum_probs=56.5
Q ss_pred CCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCC------------------CCcccc---------------
Q 048642 415 HEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSS------------------GNEITA--------------- 461 (782)
Q Consensus 415 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~------------------~~~~~~--------------- 461 (782)
..+++|||+|+++|.|.+.+|..+|+++||.|+|+|++... |+.+..
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 56899999999999999999999999999999999998421 110000
Q ss_pred -CCCcccEEEEehhhHHHHHHHHhc
Q 048642 462 -DPHFLPASQITYKDGVKVLDYIKS 485 (782)
Q Consensus 462 -~~~~~p~~~i~~~~g~~l~~~~~~ 485 (782)
....||+.-|+..++..|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 013589999999999999998753
No 69
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=96.80 E-value=0.0045 Score=67.26 Aligned_cols=82 Identities=29% Similarity=0.482 Sum_probs=67.6
Q ss_pred CCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCC------CCccccCCCcccEEEEehhhHHHHHHHHhcCCC
Q 048642 415 HEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSS------GNEITADPHFLPASQITYKDGVKVLDYIKSSDN 488 (782)
Q Consensus 415 ~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~------~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~ 488 (782)
...+++|+++..||.|.|.+|.+.++++||.++++.|+... ++........||+++|..++++.+..-..++.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 45789999999999999999999999999999999998542 233344456899999999999999987777777
Q ss_pred ceEEEecC
Q 048642 489 PMGYITSP 496 (782)
Q Consensus 489 ~~~~i~~~ 496 (782)
.++.+..+
T Consensus 171 V~~~lYaP 178 (541)
T KOG2442|consen 171 VELALYAP 178 (541)
T ss_pred EEEEEECC
Confidence 66666544
No 70
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.52 E-value=0.004 Score=57.89 Aligned_cols=50 Identities=40% Similarity=0.464 Sum_probs=43.7
Q ss_pred ccccCCCCCCCCCccceEEEEeeCCcc------------hhhhhHHHHHcCceEEEEeccCC
Q 048642 405 ASLCKNGALDHEKVKGKILVCLRGDTA------------RVDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 405 ~~~c~~~~~~~~~~~gkivl~~~g~~~------------~~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
...|...++...+++|||||+.++.|. +..|..++.++||.++|++++..
T Consensus 35 ~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~ 96 (137)
T cd04820 35 APELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPR 96 (137)
T ss_pred ccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCc
Confidence 356888888889999999999998873 66899999999999999999855
No 71
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=96.30 E-value=0.0066 Score=57.50 Aligned_cols=50 Identities=28% Similarity=0.297 Sum_probs=43.0
Q ss_pred ccccCCCCCCCCCccceEEEEeeCC------------------cchhhhhHHHHHcCceEEEEeccCC
Q 048642 405 ASLCKNGALDHEKVKGKILVCLRGD------------------TARVDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 405 ~~~c~~~~~~~~~~~gkivl~~~g~------------------~~~~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
...|...++...+++|||||+.|+. |.+..|..++.+.||.++|++++..
T Consensus 33 ~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~~ 100 (151)
T cd04822 33 APELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGPN 100 (151)
T ss_pred ccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCCc
Confidence 3557777888899999999998874 5678899999999999999999865
No 72
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.18 E-value=0.11 Score=45.94 Aligned_cols=80 Identities=24% Similarity=0.250 Sum_probs=60.9
Q ss_pred ceEEEEEEEEecCC-CCeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEEEecCCCCCCceEEEEEEEEcCCcEEEE
Q 048642 689 GSVTLSRKLKNVGS-PSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWTDGKHYVRS 767 (782)
Q Consensus 689 ~~~t~~~tv~n~~~-~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~G~i~~~~~~~~v~~ 767 (782)
...+.+++|+|.+. ...|++.........++++|..-.+ ++|++.++.|++.+.. .. +.+.+.|...-.+..+.+
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~--~~-g~~~~~l~i~~e~~~~~i 95 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK--PL-GDYEGSLVITTEGGSFEI 95 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC--CC-ceEEEEEEEEECCeEEEE
Confidence 56778889999999 9999998755345567788877666 7899999999999643 33 345788888665568888
Q ss_pred EEEEE
Q 048642 768 PIVVN 772 (782)
Q Consensus 768 P~~~~ 772 (782)
|+-..
T Consensus 96 ~v~a~ 100 (102)
T PF14874_consen 96 PVKAE 100 (102)
T ss_pred EEEEE
Confidence 88654
No 73
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.76 E-value=0.043 Score=45.99 Aligned_cols=63 Identities=29% Similarity=0.419 Sum_probs=39.9
Q ss_pred ceEEEEEEEEecCC-C-CeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEEEecCCCCCCce
Q 048642 689 GSVTLSRKLKNVGS-P-SNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNY 751 (782)
Q Consensus 689 ~~~t~~~tv~n~~~-~-~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~ 751 (782)
...+++++|+|.|. . ...++++..|.|-.+...|..+.-.++|++.+++++|+++.....+.|
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y 69 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTY 69 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEE
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceE
Confidence 57889999999997 4 568889999999888888888765589999999999998764444544
No 74
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=95.65 E-value=0.015 Score=58.64 Aligned_cols=48 Identities=33% Similarity=0.438 Sum_probs=41.0
Q ss_pred ccCCCCCC-----CCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCC
Q 048642 407 LCKNGALD-----HEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 407 ~c~~~~~~-----~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
.|...+++ ..+++|||||+++|.+.+..|..+|+++||.|+|+|++..
T Consensus 54 yG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 54 YGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 45554443 6789999999999999889999999999999999999864
No 75
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=95.59 E-value=0.015 Score=54.33 Aligned_cols=39 Identities=23% Similarity=0.190 Sum_probs=36.8
Q ss_pred CCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCC
Q 048642 416 EKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 416 ~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
.+++|||+|++.|...+..|.++|++.||.|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 679999999999999999999999999999999998854
No 76
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=95.49 E-value=0.021 Score=52.70 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=67.5
Q ss_pred ccccccCCCCCCCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCcc------c----cCCCcccEEEEe
Q 048642 403 TAASLCKNGALDHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEI------T----ADPHFLPASQIT 472 (782)
Q Consensus 403 ~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~------~----~~~~~~p~~~i~ 472 (782)
.....|.... +..+..|.+.|++||+|+|..|..++.++||.++|+.++....... + .+...+|+..+-
T Consensus 72 dPp~aC~elr-N~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~AniPa~fll 150 (193)
T KOG3920|consen 72 DPPHACEELR-NEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRANIPAVFLL 150 (193)
T ss_pred CChhHHHHHh-hcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccCCceEEEe
Confidence 3456776542 2346788999999999999999999999999999998876543221 2 234689999999
Q ss_pred hhhHHHHHHHHhcCCCceEEEec
Q 048642 473 YKDGVKVLDYIKSSDNPMGYITS 495 (782)
Q Consensus 473 ~~~g~~l~~~~~~~~~~~~~i~~ 495 (782)
..+|..+..-++.-...-+.|.-
T Consensus 151 g~~Gy~ir~sL~r~~r~ha~i~I 173 (193)
T KOG3920|consen 151 GVTGYYIRVSLKRYFRDHAKIDI 173 (193)
T ss_pred ccceEEEehhHHHhCCccEEEec
Confidence 88888777666655554444443
No 77
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.1 Score=55.80 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=62.0
Q ss_pred cccCCCCC---CCCCccceEEEEeeCCcchhhhhHHHHHcCceEEEEeccCCCCCcccc----CCCcccEEEEehhhHHH
Q 048642 406 SLCKNGAL---DHEKVKGKILVCLRGDTARVDKGRQAAVAGAVGMILCNDKSSGNEITA----DPHFLPASQITYKDGVK 478 (782)
Q Consensus 406 ~~c~~~~~---~~~~~~gkivl~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~----~~~~~p~~~i~~~~g~~ 478 (782)
.+|++... ....-...++|+.||+|+|.+|..+|+++|..++|+||+....+.... ....++.++++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 45665432 134556689999999999999999999999999999998776543322 23468999999999999
Q ss_pred HHHHHhc
Q 048642 479 VLDYIKS 485 (782)
Q Consensus 479 l~~~~~~ 485 (782)
|..|...
T Consensus 143 l~~~~~~ 149 (348)
T KOG4628|consen 143 LSSYAGR 149 (348)
T ss_pred HHHhhcc
Confidence 9887544
No 78
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=90.57 E-value=4.6 Score=36.60 Aligned_cols=54 Identities=20% Similarity=0.228 Sum_probs=38.5
Q ss_pred eEEEEEEEEecCC-CCeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEEEecC
Q 048642 690 SVTLSRKLKNVGS-PSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKW 744 (782)
Q Consensus 690 ~~t~~~tv~n~~~-~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 744 (782)
.-.++++|.|.+. +.+|++++..++|+.+......+++ ++|++.++.|.+..+.
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECH
Confidence 5678899999999 9999999999889998655588888 7899999999998876
No 79
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=90.00 E-value=0.49 Score=45.26 Aligned_cols=44 Identities=30% Similarity=0.357 Sum_probs=35.6
Q ss_pred CCCCCCCccceEEEEeeCCcch-------------------hhhhHHHHHcCceEEEEeccCC
Q 048642 411 GALDHEKVKGKILVCLRGDTAR-------------------VDKGRQAAVAGAVGMILCNDKS 454 (782)
Q Consensus 411 ~~~~~~~~~gkivl~~~g~~~~-------------------~~~~~~~~~~Ga~g~i~~n~~~ 454 (782)
.++...|++||||++.+++..+ ..|...+.+.||.|+|++++..
T Consensus 41 dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~~~ 103 (157)
T cd04821 41 DDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHETE 103 (157)
T ss_pred ccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeCCC
Confidence 4677889999999999765432 2499999999999999997643
No 80
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=87.69 E-value=7.4 Score=35.56 Aligned_cols=68 Identities=22% Similarity=0.241 Sum_probs=48.8
Q ss_pred ceEEEEEEEEecCC-CCeEEEEEeC----CCC----------c----------eEEEEecEEEEccCCcEEEEEEEEEec
Q 048642 689 GSVTLSRKLKNVGS-PSNYAASVRE----PLG----------I----------SVSVEPKILAFKKIGEEKSFKVTLKPK 743 (782)
Q Consensus 689 ~~~t~~~tv~n~~~-~~ty~~~~~~----~~g----------~----------~v~v~p~~~~~~~~~~~~~~~vt~~~~ 743 (782)
...+++++|+|.++ ..+|.+++.. ..| . -+++ |..+++ +++++++++++++.+
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEcC
Confidence 68899999999998 8999987642 111 0 0223 445888 789999999999987
Q ss_pred CCCCCCceEEEEEEEE
Q 048642 744 WSGAPDNYRFGELTWT 759 (782)
Q Consensus 744 ~~~~~~~~~~G~i~~~ 759 (782)
. ..-.+.+-|.|.++
T Consensus 105 ~-~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 105 K-KAFDGIILGGIYFS 119 (121)
T ss_pred C-CCcCCEEEeeEEEE
Confidence 6 44455566777775
No 81
>COG1470 Predicted membrane protein [Function unknown]
Probab=87.60 E-value=3.3 Score=45.73 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=57.9
Q ss_pred ceEEEEEEEEecCC-C-CeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEEEecCCCCCCceEEEEEEEEc
Q 048642 689 GSVTLSRKLKNVGS-P-SNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWTD 760 (782)
Q Consensus 689 ~~~t~~~tv~n~~~-~-~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~G~i~~~~ 760 (782)
.+.++...+.|.|+ + ..-++++..|+|-++.|+|.++-..++|++.++++|++++....++.| +-+|.-+.
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY-~i~i~~ks 469 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDY-RITITAKS 469 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcE-EEEEEEee
Confidence 57889999999998 4 567899999999999999998766689999999999999875666666 44555543
No 82
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=79.92 E-value=1.2 Score=52.80 Aligned_cols=24 Identities=38% Similarity=0.459 Sum_probs=21.8
Q ss_pred CCCCCceEEEEecCCcCcCCCCcc
Q 048642 142 GRFGEDIIIANLDTGVWPESKSFS 165 (782)
Q Consensus 142 ~~~G~gV~VaVIDtGid~~Hp~f~ 165 (782)
.+.|+||+|||+|||||+.-|-+.
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 568999999999999999988875
No 83
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=72.67 E-value=25 Score=31.85 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=45.3
Q ss_pred ceEEEEEEEEecCC-CCeEEEEEeC---CC----CceEEEEecEEEEccCCcEEEEEEEEEecCCCCCCceEEEEEEEE
Q 048642 689 GSVTLSRKLKNVGS-PSNYAASVRE---PL----GISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWT 759 (782)
Q Consensus 689 ~~~t~~~tv~n~~~-~~ty~~~~~~---~~----g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~G~i~~~ 759 (782)
...+.+++|+|.++ +..+.+.+.. .. .-.+-++|..+.+ ++|+++++.| +.... .+.+....=+|.++
T Consensus 14 ~~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~-~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 14 SQRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSK-LPIDRESLYRLSFR 89 (122)
T ss_dssp TSSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSG-S-SSS-EEEEEEEE
T ss_pred CCCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCC-CCCCceEEEEEEEE
Confidence 45677899999997 6666666653 11 1268899999999 7899999999 66433 34443333345554
No 84
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=68.83 E-value=41 Score=31.43 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=51.2
Q ss_pred eEEEEEEEEecCC--CCeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEEEecCCCCCCceEEEEEEEE
Q 048642 690 SVTLSRKLKNVGS--PSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWT 759 (782)
Q Consensus 690 ~~t~~~tv~n~~~--~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~G~i~~~ 759 (782)
...+.+-+-|-.+ -...+++......+++--.|..+++ .+++.++++.++.+.+ ...+.+||.|++.
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsS--tetGvIfG~I~Yd 138 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSS--TETGVIFGNIVYD 138 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEe--ccCCEEEEEEEEe
Confidence 4556666677665 3455566666667888888999998 7889999999998876 6678899999984
No 85
>COG1470 Predicted membrane protein [Function unknown]
Probab=68.10 E-value=61 Score=36.26 Aligned_cols=62 Identities=23% Similarity=0.442 Sum_probs=47.2
Q ss_pred ceEEEEEEEEecCC-CCeEEEEEe-CCCCceEEEEe-----cEEEEccCCcEEEEEEEEEecCCCCCCce
Q 048642 689 GSVTLSRKLKNVGS-PSNYAASVR-EPLGISVSVEP-----KILAFKKIGEEKSFKVTLKPKWSGAPDNY 751 (782)
Q Consensus 689 ~~~t~~~tv~n~~~-~~ty~~~~~-~~~g~~v~v~p-----~~~~~~~~~~~~~~~vt~~~~~~~~~~~~ 751 (782)
.+..|++++.|.|. +.+|.+++. .|++-.....- +++.+ .+||+++|+|.+.++...-.+.|
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~na~pG~Y 352 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLNATPGTY 352 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCCCCCCce
Confidence 46789999999999 999999998 77765554332 34556 68999999999998764444444
No 86
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=64.80 E-value=43 Score=37.75 Aligned_cols=54 Identities=26% Similarity=0.244 Sum_probs=45.8
Q ss_pred eEEEEEEEEecCC-CCeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEEEecC
Q 048642 690 SVTLSRKLKNVGS-PSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKW 744 (782)
Q Consensus 690 ~~t~~~tv~n~~~-~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 744 (782)
...+++++.|.+. +.+|+++++..++..+...+..+++ ++|+..++.|.+..+.
T Consensus 347 ~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 347 ENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 5678889999998 9999999999889888876457888 7899999999888764
No 87
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=59.72 E-value=41 Score=29.51 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=39.5
Q ss_pred ceEEEEEEEEecCC-CCeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEEEecC
Q 048642 689 GSVTLSRKLKNVGS-PSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTLKPKW 744 (782)
Q Consensus 689 ~~~t~~~tv~n~~~-~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 744 (782)
......++|+|.++ ..-|.+....+.. ..|.|..-.+ .++++.++.|++....
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~--y~v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNR--YRVKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTT--EEEESSEEEE--TTEEEEEEEEE-SSS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCce--EEecCCCEEE-CCCCEEEEEEEEEecc
Confidence 45777889999998 8899998887765 5677988766 7899999999998744
No 88
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=54.71 E-value=72 Score=27.19 Aligned_cols=51 Identities=25% Similarity=0.363 Sum_probs=31.9
Q ss_pred ceEEEEEEEEecCC--CCeEEEEEeCCCCceEEEEecEE-EEccCCcEEEEEEEEEec
Q 048642 689 GSVTLSRKLKNVGS--PSNYAASVREPLGISVSVEPKIL-AFKKIGEEKSFKVTLKPK 743 (782)
Q Consensus 689 ~~~t~~~tv~n~~~--~~ty~~~~~~~~g~~v~v~p~~~-~~~~~~~~~~~~vt~~~~ 743 (782)
...+++.+|+|.|. ...+.+.+... |..+ .-..+ .+ ++|++.++++++...
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 68899999999998 45566665443 2222 22222 34 688999888888874
No 89
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=45.53 E-value=1.6e+02 Score=25.89 Aligned_cols=55 Identities=31% Similarity=0.398 Sum_probs=36.2
Q ss_pred CceEEEEEEEEecCC-C-CeEEEE-----EeCCCCce---EEEEecEEEEccCCcEEEEEEEEEecC
Q 048642 688 SGSVTLSRKLKNVGS-P-SNYAAS-----VREPLGIS---VSVEPKILAFKKIGEEKSFKVTLKPKW 744 (782)
Q Consensus 688 ~~~~t~~~tv~n~~~-~-~ty~~~-----~~~~~g~~---v~v~p~~~~~~~~~~~~~~~vt~~~~~ 744 (782)
+...++.++++|..+ . .+-++. +..+ |+. +......+++ +++++.++++++.+.+
T Consensus 14 G~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~yt-G~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 14 GQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYT-GLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp TSEEEEEEEEEE-SSS-EECEEEEEEEEEEECT-TTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCCEEEEEEEEeCCcCccccceeEEEEEEEEEC-CcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 368899999999987 5 442222 2333 653 5666677777 7899999999998865
No 90
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=45.43 E-value=50 Score=40.36 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=34.9
Q ss_pred ceEEEEEEEEecCC-C--CeEEEEEeCCCCceEEEEe-------cEEEEccCCcEEEEEEEEEecC
Q 048642 689 GSVTLSRKLKNVGS-P--SNYAASVREPLGISVSVEP-------KILAFKKIGEEKSFKVTLKPKW 744 (782)
Q Consensus 689 ~~~t~~~tv~n~~~-~--~ty~~~~~~~~g~~v~v~p-------~~~~~~~~~~~~~~~vt~~~~~ 744 (782)
+..+++++|+|+|+ . .+-.+.+..|.+- +. .| +.+.+ ++||++++++++...+
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~-~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~~ 729 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTAS-MS-RPVKELKGFEKIML-KPGETQTVSFPIDIEA 729 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCCC-CC-CHHHhccCceeEeE-CCCCeEEEEEeecHHH
Confidence 46889999999998 4 4444555555321 11 12 23455 7899999999998754
No 91
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=45.42 E-value=1.3e+02 Score=25.44 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=13.3
Q ss_pred cEEEEccCCcEEEEEEEEEecC
Q 048642 723 KILAFKKIGEEKSFKVTLKPKW 744 (782)
Q Consensus 723 ~~~~~~~~~~~~~~~vt~~~~~ 744 (782)
...++ ++||+.+|..+++..+
T Consensus 52 ~~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 52 QEETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEEE--TT-EEEEEEEESS--
T ss_pred eEEEE-CCCCEEEEEEEECCCC
Confidence 34566 7899999999987654
No 92
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=42.83 E-value=76 Score=26.42 Aligned_cols=39 Identities=33% Similarity=0.501 Sum_probs=28.4
Q ss_pred eEEEEecEEEEccCCcEEEEEEEEEecCCCCCCceEEEEEEEEcC
Q 048642 717 SVSVEPKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGELTWTDG 761 (782)
Q Consensus 717 ~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~G~i~~~~~ 761 (782)
.+++.|..+++ ..|++..|++++.+.. .. . ...+.|+..
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~--~~-~--~~~v~w~Ss 42 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSS--AK-V--TGKVTWTSS 42 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCC--CC-c--cceEEEEEC
Confidence 57888999888 6899999999976543 22 1 466778654
No 93
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=40.74 E-value=52 Score=34.86 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=50.9
Q ss_pred ceecCccccccccccccCCCCCC---CCChhH----------HHHHHHHhhhCCCeEEEEccCCCC------------CC
Q 048642 253 AKGGSPKARVAAYKVCWPQVSDG---QCFDAD----------ILKGFDMAIHDGVDVISVSLGGDP------------AD 307 (782)
Q Consensus 253 ~~GvAP~A~l~~~kv~~~~~~~g---~~~~~~----------i~~ai~~a~~~g~dVIn~SlG~~~------------~~ 307 (782)
++-+||-+.|-+...+|...+.- .+..+- -+.-+++|+++|.+||+ |.|... +.
T Consensus 137 ~skiaPw~eIdar~~l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Vis-s~GaaaksDPTrv~v~Dis~ 215 (430)
T KOG2018|consen 137 FSKIAPWCEIDARNMLWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVIS-STGAAAKSDPTRVNVADISE 215 (430)
T ss_pred HHhhCccceecHHHhhcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEe-ccCccccCCCceeehhhccc
Confidence 46789999998887777543210 112222 23446689999999996 566541 23
Q ss_pred CCCCHHHHHHHH-HH----hcCcEEEEecCC
Q 048642 308 YFNDGTAIGAFH-AV----KHGIVVVCSAAN 333 (782)
Q Consensus 308 ~~~~~~~~a~~~-a~----~~Gi~vV~AAGN 333 (782)
...||+++...+ .+ ..||.||+|+--
T Consensus 216 t~~DPlsR~vRrrLrk~GI~~GIpVVFS~Ek 246 (430)
T KOG2018|consen 216 TEEDPLSRSVRRRLRKRGIEGGIPVVFSLEK 246 (430)
T ss_pred cccCcHHHHHHHHHHHhccccCCceEEecCC
Confidence 456888877764 33 457889998643
No 94
>smart00237 Calx_beta Domains in Na-Ca exchangers and integrin-beta4. Domain in Na-Ca exchangers and integrin subunit beta4 (and some cyanobacterial proteins)
Probab=39.30 E-value=2.4e+02 Score=23.95 Aligned_cols=61 Identities=18% Similarity=0.234 Sum_probs=35.5
Q ss_pred CcEEeeccCceEEEEEEEEecCC-CCeEEEEEe-----CCCCceEEEEecEEEEccCCc-EEEEEEEEEec
Q 048642 680 PSISVPMISGSVTLSRKLKNVGS-PSNYAASVR-----EPLGISVSVEPKILAFKKIGE-EKSFKVTLKPK 743 (782)
Q Consensus 680 ps~~~~~~~~~~t~~~tv~n~~~-~~ty~~~~~-----~~~g~~v~v~p~~~~~~~~~~-~~~~~vt~~~~ 743 (782)
+++++.+- ..+++++|...++ ....++.+. +-.|.+.....-+|+| ++|+ +++|+|.+.-+
T Consensus 9 ~~~~V~E~--~g~~~v~V~R~g~~~~~~~V~~~t~~gtA~~g~Dy~~~~g~l~F-~~ge~~k~i~i~i~dD 76 (90)
T smart00237 9 PVYTVSES--DGEVEVCVVRTGGARGTVVVPYRTEDGTATAGSDYEPVEGTLTF-PPGETEKCIRIKIIDD 76 (90)
T ss_pred CeEEEEEC--CeEEEEEEEecCCCCcEEEEEEEEcCCcCCCCCCccccceEEEE-CCCCEEEEEEEEEeCC
Confidence 45556553 3456666666665 555555443 3345666666788899 4555 56666666543
No 95
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=36.90 E-value=2.2e+02 Score=27.95 Aligned_cols=64 Identities=22% Similarity=0.348 Sum_probs=40.8
Q ss_pred ceEEEEEEEEecCCCCeEEEEEeC----CCCceEEEE--ecEEEEccCCcEEEEEEEEEecCCCCCCceEEEE
Q 048642 689 GSVTLSRKLKNVGSPSNYAASVRE----PLGISVSVE--PKILAFKKIGEEKSFKVTLKPKWSGAPDNYRFGE 755 (782)
Q Consensus 689 ~~~t~~~tv~n~~~~~ty~~~~~~----~~g~~v~v~--p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~~~G~ 755 (782)
...+++.+|-|.|+..-|.+++.. ++.+++.-- ..++.-.++|++.+.++++.+. ..+.|.++.
T Consensus 38 ~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~---~~G~f~~~~ 107 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPK---KSGYFNFTP 107 (181)
T ss_pred cEEEEEEEEEECCCCeEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeee---eeEEEEccC
Confidence 678999999999997778888765 233332111 1112222788988888888874 355555443
No 96
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=36.31 E-value=3.9e+02 Score=33.21 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=37.5
Q ss_pred CcEEeeccCceEEEEEEEEecC-C-CCeEEEEEe-----CCCCceEEEEecEEEEccCCc-EEEEEEEEEecC
Q 048642 680 PSISVPMISGSVTLSRKLKNVG-S-PSNYAASVR-----EPLGISVSVEPKILAFKKIGE-EKSFKVTLKPKW 744 (782)
Q Consensus 680 ps~~~~~~~~~~t~~~tv~n~~-~-~~ty~~~~~-----~~~g~~v~v~p~~~~~~~~~~-~~~~~vt~~~~~ 744 (782)
++..+.+ ...+++++|+..| + ..+.+|... +..|.+.....-+|+| ++|| +++++|.+.-++
T Consensus 407 ~~Y~V~E--n~GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~~sGTLtF-~PGEt~KtItV~IIDDd 476 (928)
T TIGR00845 407 GHYTCLE--NCGTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGTLVF-KPGETQKEFRIGIIDDD 476 (928)
T ss_pred CeEEEee--cCcEEEEEEEEccCCCCceEEEEEEccCCccCCCCCccccCceEEE-CCCceEEEEEEEEccCC
Confidence 4455544 3456677776666 3 444555443 3456777777789999 5666 467777765443
No 97
>PLN03080 Probable beta-xylosidase; Provisional
Probab=35.11 E-value=89 Score=38.27 Aligned_cols=52 Identities=15% Similarity=0.130 Sum_probs=32.8
Q ss_pred eEEEEEEEEecCC-CC--eEEEEEeCCCC-----ceEEEEecEEEEccCCcEEEEEEEEEe
Q 048642 690 SVTLSRKLKNVGS-PS--NYAASVREPLG-----ISVSVEPKILAFKKIGEEKSFKVTLKP 742 (782)
Q Consensus 690 ~~t~~~tv~n~~~-~~--ty~~~~~~~~g-----~~v~v~p~~~~~~~~~~~~~~~vt~~~ 742 (782)
..+++++|||+|+ .. +-.+-+..|.. ++--+--+.+.+ ++||+++++++++.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 4789999999998 44 44445554432 111111233455 78999999999876
No 98
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=34.21 E-value=1.2e+02 Score=22.24 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=22.3
Q ss_pred EEEEecCC-CCeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEE
Q 048642 695 RKLKNVGS-PSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTL 740 (782)
Q Consensus 695 ~tv~n~~~-~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~ 740 (782)
.+++|.|+ ...- -.+...=|-.. ++...-.+ ++||+..+.|++
T Consensus 2 F~~~N~g~~~L~I-~~v~tsCgCt~-~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVI-TDVQTSCGCTT-AEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEE-EEeeEccCCEE-eeCCcceE-CCCCEEEEEEEC
Confidence 56888886 3322 22322223222 22222334 789998888864
No 99
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=33.68 E-value=2.9e+02 Score=23.32 Aligned_cols=47 Identities=19% Similarity=0.151 Sum_probs=30.9
Q ss_pred ceEEEEEEEEecCC-CCeEEEEEeCCCCceEEEEecEEEEccCCcEEEEEEEE
Q 048642 689 GSVTLSRKLKNVGS-PSNYAASVREPLGISVSVEPKILAFKKIGEEKSFKVTL 740 (782)
Q Consensus 689 ~~~t~~~tv~n~~~-~~ty~~~~~~~~g~~v~v~p~~~~~~~~~~~~~~~vt~ 740 (782)
....+.++++|.|. ..++++.-..-. .-.|.++++ ++|++.+..+.+
T Consensus 18 ~~g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v-~ag~~~~~~w~l 65 (89)
T PF05506_consen 18 ATGNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTV-AAGQTVSLTWPL 65 (89)
T ss_pred CCCEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEE-CCCCEEEEEEee
Confidence 34588999999987 777777652211 113556677 678877766666
No 100
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=31.54 E-value=48 Score=23.84 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=18.8
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhc
Q 048642 574 VGLLKTAHPDWSPSAIRSAIMTT 596 (782)
Q Consensus 574 aALl~q~~p~~sp~~ik~~L~~T 596 (782)
+--|++.+|++++..|+..|...
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~ 27 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQAN 27 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHc
Confidence 34678899999999999999765
No 101
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=29.39 E-value=25 Score=15.99 Aligned_cols=6 Identities=50% Similarity=0.789 Sum_probs=4.1
Q ss_pred cccCCC
Q 048642 510 SFSSAG 515 (782)
Q Consensus 510 ~fSs~G 515 (782)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 477776
No 102
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=27.79 E-value=48 Score=22.56 Aligned_cols=13 Identities=31% Similarity=0.782 Sum_probs=10.7
Q ss_pred chhhHHHHHHHHH
Q 048642 565 MSCPHVAGVVGLL 577 (782)
Q Consensus 565 mAaP~VAG~aALl 577 (782)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998744
No 103
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=27.27 E-value=4e+02 Score=22.79 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=31.6
Q ss_pred CCCcEEeeccCceEEEEEEEEecCC-CCeEEEEEe-----CCCCceEEEEecEEEEccCCcEEEEEEEEEecC
Q 048642 678 NYPSISVPMISGSVTLSRKLKNVGS-PSNYAASVR-----EPLGISVSVEPKILAFKKIGEEKSFKVTLKPKW 744 (782)
Q Consensus 678 n~ps~~~~~~~~~~t~~~tv~n~~~-~~ty~~~~~-----~~~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 744 (782)
.-+++++.+-.+...+.+++++ +. .....+.+. +-.|.+....+.+++|.+...++++.|++..+.
T Consensus 16 ~~~~~~v~E~~~~~~v~V~~~~-~~~~~~v~v~~~~~~gtA~~~~Dy~~~~~~v~f~~g~t~~~i~i~i~dD~ 87 (100)
T PF03160_consen 16 SSPSYTVSEGDGTVTVTVTRSG-GSLDGPVTVNYSTVDGTATAGSDYSPTSGTVTFPPGETSKTINITIIDDD 87 (100)
T ss_dssp SSSEEEEETTSSEEEEEEEEES-S-TSSEEEEEEEEEESSSETTTSBE--EEEEEE-TT-SEEEEEEEB---S
T ss_pred eCCEEEEEeCCCEEEEEEEEcc-cCCCcceEEEEEEeCCccccccccccceeEEEECCCCeEEEEEEEEeCCC
Confidence 3345555554444455554444 32 232222222 234777788888899954444677777765433
No 104
>PRK15019 CsdA-binding activator; Provisional
Probab=26.10 E-value=63 Score=30.58 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=27.3
Q ss_pred eeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 048642 559 IMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRS 591 (782)
Q Consensus 559 ~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~ 591 (782)
.+.|.| =|+.|-|.+|||.+.+-..+|++|.+
T Consensus 78 ~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 78 HFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 344555 67999999999999999999999876
No 105
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=24.55 E-value=71 Score=29.90 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=28.3
Q ss_pred eeeccccchhhHHHHHHHHHHhhCCCCCHHHHHHH
Q 048642 558 NIMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSA 592 (782)
Q Consensus 558 ~~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~ 592 (782)
..+.|.| =|+.|-|.+|||.+.+-+.+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 3445666 589999999999999999999998744
No 106
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=21.73 E-value=77 Score=24.48 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=22.0
Q ss_pred eeeeccccchhhHHHHHH------HHHHhhCCCCCHHHHHHHHH
Q 048642 557 YNIMSGTSMSCPHVAGVV------GLLKTAHPDWSPSAIRSAIM 594 (782)
Q Consensus 557 y~~~sGTSmAaP~VAG~a------ALl~q~~p~~sp~~ik~~L~ 594 (782)
--.+.||=+..=.|.... .-+.+.||.+++++|+++|.
T Consensus 11 ~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 11 QPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp --EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred cceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 345566666655554442 23456699999999999984
No 107
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=21.68 E-value=87 Score=29.31 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=27.3
Q ss_pred eeccccchhhHHHHHHHHHHhhCCCCCHHHHHH
Q 048642 559 IMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRS 591 (782)
Q Consensus 559 ~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~ 591 (782)
.+.|.| =|+.|-|.+||+.+.+-..+|++|.+
T Consensus 68 ~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 68 ELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 444556 68999999999999999999999865
No 108
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=21.58 E-value=2.5e+02 Score=25.03 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=33.9
Q ss_pred ccccccccccccCCCCCCCCChhHHHHHHHHhhhCCCeEEEEccCCC
Q 048642 258 PKARVAAYKVCWPQVSDGQCFDADILKGFDMAIHDGVDVISVSLGGD 304 (782)
Q Consensus 258 P~A~l~~~kv~~~~~~~g~~~~~~i~~ai~~a~~~g~dVIn~SlG~~ 304 (782)
++++|+.+--+ |+|....++.-+++..+.|+++|-+|--..
T Consensus 36 ~~~elvgf~~C------gGCpg~~~~~~~~~l~~~~~d~IHlssC~~ 76 (107)
T PF08821_consen 36 EDVELVGFFTC------GGCPGRKLVRRIKKLKKNGADVIHLSSCMV 76 (107)
T ss_pred CCeEEEEEeeC------CCCChhHHHHHHHHHHHCCCCEEEEcCCEe
Confidence 56888887555 368999999999999999999999987655
No 109
>COG4808 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.08 E-value=3.7e+02 Score=24.96 Aligned_cols=35 Identities=6% Similarity=0.103 Sum_probs=26.4
Q ss_pred ccccEeEEeccceeeEEEEcCHHHHHHHhCCCCeE
Q 048642 72 ARDAIFYSYQNHINGFAATLEEEEAAEIAKHPDVV 106 (782)
Q Consensus 72 ~~~~i~~~y~~~~ng~s~~~~~~~~~~L~~~p~V~ 106 (782)
...++.|.-+....-+.+.+++-....|.++|++.
T Consensus 91 v~ekidY~D~yA~E~vdId~tkvd~k~L~k~~G~s 125 (152)
T COG4808 91 VEEKLDYKDTYAQENVDIDMTKVDFKALQKISGIS 125 (152)
T ss_pred cceeeeeecccceeeeccceeeecHHHHhcCcCcc
Confidence 34455555556777888888999999999999974
No 110
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=20.49 E-value=1.4e+02 Score=21.38 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=21.0
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhc
Q 048642 573 VVGLLKTAHPDWSPSAIRSAIMTT 596 (782)
Q Consensus 573 ~aALl~q~~p~~sp~~ik~~L~~T 596 (782)
.+..|++.+|+++...|+..|...
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~ 28 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEAN 28 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHc
Confidence 456788999999999999999965
No 111
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=20.34 E-value=1e+02 Score=28.31 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=26.5
Q ss_pred eeccccchhhHHHHHHHHHHhhCCCCCHHHHHHH
Q 048642 559 IMSGTSMSCPHVAGVVGLLKTAHPDWSPSAIRSA 592 (782)
Q Consensus 559 ~~sGTSmAaP~VAG~aALl~q~~p~~sp~~ik~~ 592 (782)
.+.|.|= |+.|-|++||+.+.+-+.+|++|.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4556655 67999999999999999999998764
Done!