BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048643
(506 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBF|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RBL|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Apo Form
pdb|3RCH|B Chain B, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 392 bits (1007), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/487 (40%), Positives = 287/487 (58%), Gaps = 31/487 (6%)
Query: 20 LDPEEFRRQAHMVIDFIADYYKNVDKYPVRSQVEPGYLRKRLPECAPYNPESMETILQDV 79
++ EFRR+ ++D++A+Y + ++ V VEPGYLR +P AP P++ E I+ DV
Sbjct: 1 MNASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDV 60
Query: 80 QEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISSPAATELENIVMD 139
++ I+PGVTHW SP +FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 140 WLGQMLKLPKSFL--FSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGREN--------I 189
WLG+ML+LPK+FL +G GGGVIQG+ EA L L AAR +V++++ + +
Sbjct: 121 WLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIM 180
Query: 190 SKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLV 249
KLV Y SDQ H ++++A I G+ LK AI + ++ + +L + D AGL+
Sbjct: 181 EKLVAYSSDQAHSSVERAGLIGGVKLK---AIPS--DGNFAMRASALQEALERDKAAGLI 235
Query: 250 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVEGAD 309
P F+ AT+GTT + D L + + + IW+HVDAAYAGSA ICPEF+H ++GVE AD
Sbjct: 236 PFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD 295
Query: 310 SFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQITLSR 369
SF+ N HKW DC +WVK + L + +P YLK+ +S + DY+ WQI L R
Sbjct: 296 SFNFNPHKWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGR 355
Query: 370 RFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKRVSPSAVMDKLKPKYENCH 429
RFRSLK+W V R YGV L+ ++R HV ++ FE LV D P++E C
Sbjct: 356 RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQD-------------PRFEICV 402
Query: 430 SQQL---VTEEEAINEFNRELLESINASGKAYMTHAVCGGIYAMRFAVGATLTEERHVMV 486
L + N+ N LL+ IN++ K ++ + +RFA+ + E HV
Sbjct: 403 EVILGLVCFRLKGSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQR 462
Query: 487 AWTMVQE 493
AW ++E
Sbjct: 463 AWEHIKE 469
>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid
Decarboxylase (Aadc) In The Open Conformation With Llp
And Plp Bound To Chain-A And Chain- B Respectively
Length = 480
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/487 (40%), Positives = 286/487 (58%), Gaps = 31/487 (6%)
Query: 20 LDPEEFRRQAHMVIDFIADYYKNVDKYPVRSQVEPGYLRKRLPECAPYNPESMETILQDV 79
++ EFRR+ ++D++A+Y + ++ V VEPGYLR +P AP P++ E I+ DV
Sbjct: 1 MNASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDV 60
Query: 80 QEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISSPAATELENIVMD 139
++ I+PGVTHW SP +FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 140 WLGQMLKLPKSFL--FSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGREN--------I 189
WLG+ML+LPK+FL +G GGGVIQG+ EA L L AAR +V++++ + +
Sbjct: 121 WLGKMLELPKAFLNEKAGEGGGVIQGSASEATLVALLAARTKVIHRLQAASPELTQAAIM 180
Query: 190 SKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLV 249
KLV Y SDQ H ++++A I G+ LK AI + ++ + +L + D AGL+
Sbjct: 181 EKLVAYSSDQAHSSVERAGLIGGVKLK---AIPS--DGNFAMRASALQEALERDKAAGLI 235
Query: 250 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVEGAD 309
P F+ AT+GTT + D L + + + IW+HVDAAYAGSA ICPEF+H ++GVE AD
Sbjct: 236 PFFMVATLGTTTCCSFDNLLEVGPICNKEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD 295
Query: 310 SFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQITLSR 369
SF+ N H W DC +WVK + L + +P YLK+ +S + DY+ WQI L R
Sbjct: 296 SFNFNPHXWLLVNFDCSAMWVKKRTDLTGAFRLDPTYLKHSHQDSGLITDYRHWQIPLGR 355
Query: 370 RFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKRVSPSAVMDKLKPKYENCH 429
RFRSLK+W V R YGV L+ ++R HV ++ FE LV D P++E C
Sbjct: 356 RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFESLVRQD-------------PRFEICV 402
Query: 430 SQQL---VTEEEAINEFNRELLESINASGKAYMTHAVCGGIYAMRFAVGATLTEERHVMV 486
L + N+ N LL+ IN++ K ++ + +RFA+ + E HV
Sbjct: 403 EVILGLVCFRLKGSNKVNEALLQRINSAKKIHLVPCHLRDKFVLRFAICSRTVESAHVQR 462
Query: 487 AWTMVQE 493
AW ++E
Sbjct: 463 AWEHIKE 469
>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS3|B Chain B, Crystal Structure Of Dopa Decarboxylase In Complex With
The Inhibitor Carbidopa
pdb|1JS6|A Chain A, Crystal Structure Of Dopa Decarboxylase
pdb|1JS6|B Chain B, Crystal Structure Of Dopa Decarboxylase
Length = 486
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/486 (39%), Positives = 282/486 (58%), Gaps = 31/486 (6%)
Query: 20 LDPEEFRRQAHMVIDFIADYYKNVDKYPVRSQVEPGYLRKRLPECAPYNPESMETILQDV 79
++ +FRR+ ++D++ADY + ++ V V+PGYLR +P AP P++ E ILQDV
Sbjct: 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60
Query: 80 QEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISSPAATELENIVMD 139
++ I+PGVTHW SP +FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 140 WLGQMLKLPKSFLFSGNGGG--VIQGTTCEAILCTLTAARDRVLNKIGREN--------I 189
WLG+ML+LP++FL G G VIQG+ EA L L AAR +V+ ++ + +
Sbjct: 121 WLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVL 180
Query: 190 SKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLV 249
KLV Y SDQ H ++++A I G+ LK AI + + + +L + D AGL+
Sbjct: 181 EKLVAYASDQAHSSVERAGLIGGVKLK---AIPS--DGKFAMRASALQEALERDKAAGLI 235
Query: 250 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVEGAD 309
P F+ AT+GTT+ + D L + + + IW+HVDAAYAGSA ICPEF+H ++GVE AD
Sbjct: 236 PFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD 295
Query: 310 SFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQITLSR 369
SF+ N HKW DC +WVK + L + +P YLK+ S + DY+ WQ+ L R
Sbjct: 296 SFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGR 355
Query: 370 RFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKRVSPSAVMDKLKPKYENCH 429
RFRSLK+W V R YGV L+ ++R HV ++ FE V D P++E C
Sbjct: 356 RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD-------------PRFEVCA 402
Query: 430 SQQL---VTEEEAINEFNRELLESINASGKAYMTHAVCGGIYAMRFAVGATLTEERHVMV 486
L + + N LLE IN++ K ++ G + +RFA+ + E HV +
Sbjct: 403 EVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRL 462
Query: 487 AWTMVQ 492
AW ++
Sbjct: 463 AWEHIR 468
>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|B Chain B, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|C Chain C, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|D Chain D, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|E Chain E, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
pdb|4E1O|F Chain F, Human Histidine Decarboxylase Complex With Histidine
Methyl Ester (Hme)
Length = 481
Score = 359 bits (921), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 193/501 (38%), Positives = 275/501 (54%), Gaps = 40/501 (7%)
Query: 17 INPLDPEEFRRQAHMVIDFIADYYKNVDKYPVRSQVEPGYLRKRLPECAPYNPESMETIL 76
+ ++PEE+R + ++D+I Y V + V V+PGYLR +LPE AP +P+S ++I
Sbjct: 3 LGSMEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIF 62
Query: 77 QDVQEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISSPAATELENI 136
D++ I+PGV HWQSP+ AY+P+ S LG+ML+ N +GF W SSPA TELE
Sbjct: 63 GDIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMN 122
Query: 137 VMDWLGQMLKLPKSFLF---SGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENIS--- 190
VMDWL +ML LP+ FL S GGGV+Q T E+ L L AAR NKI S
Sbjct: 123 VMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARK---NKILEMKTSEPD 179
Query: 191 --------KLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINL 242
+LV Y SDQ H +++KA I + +K ++ L ++L I
Sbjct: 180 ADESSLNARLVAYASDQAHSSVEKAGLISLVKMKFLPV-----DDNFSLRGEALQKAIEE 234
Query: 243 DVEAGLVPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFI 302
D + GLVP+F+CAT+GTT + A D L L + + G+W+H+DAAYAG+A +CPEF+ F+
Sbjct: 235 DKQRGLVPVFVCATLGTTGVCAFDXLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFL 294
Query: 303 DGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKD 362
G+E ADSF+ N KW DC WVKD L + S NP YL++ S D+
Sbjct: 295 KGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRH--ANSGVATDFMH 352
Query: 363 WQITLSRRFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKRVSPSAVMDKLK 422
WQI LSRRFRS+KLW VIR++GV NL+ +R MAK FE LV +D
Sbjct: 353 WQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND------------- 399
Query: 423 PKYE---NCHSQQLVTEEEAINEFNRELLESINASGKAYMTHAVCGGIYAMRFAVGATLT 479
P +E H +V + N +L+ I +G+ ++ A +RF V + T
Sbjct: 400 PSFEIPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFT 459
Query: 480 EERHVMVAWTMVQEQLEAFLT 500
++ W ++++ L+
Sbjct: 460 TRDDILRDWNLIRDAATLILS 480
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 355 bits (911), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 185/482 (38%), Positives = 276/482 (57%), Gaps = 28/482 (5%)
Query: 20 LDPEEFRRQAHMVIDFIADYYKNVDKYPVRSQVEPGYLRKRLPECAPYNPESMETILQDV 79
++ EF+ A ++DFIA+Y +N+ + V +V+PGYL+ +P+ AP PE + ++QD+
Sbjct: 1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDI 60
Query: 80 QEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISSPAATELENIVMD 139
+ I+PGVTHW SP + AYFP++ S + +MLS +GF WI+SPA TELE ++MD
Sbjct: 61 ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMD 120
Query: 140 WLGQMLKLPKSFLFSG--NGGGVIQGTTCEAILCTLTAARDRVLNKIGREN--------I 189
WLG+ML+LP FL GGGVIQGT E+ L L A+ + L ++ + +
Sbjct: 121 WLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTIL 180
Query: 190 SKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLV 249
KLV Y SDQ H ++++A + G+ L ++ +S ++ + +L I DV GL+
Sbjct: 181 GKLVGYCSDQAHSSVERAGLLGGVKL------RSVQSENHRMRGAALEKAIEQDVAEGLI 234
Query: 250 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVEGAD 309
P + T+GTT A D L V + +W+HVDAAYAGSA ICPE++H + G+E AD
Sbjct: 235 PFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESAD 294
Query: 310 SFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQITLSR 369
SF+ N H W DC +W+KDPS +V++ + +P YLK+ S DY+ WQI L R
Sbjct: 295 SFNFNPHXWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAP--DYRHWQIPLGR 352
Query: 370 RFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKRVSPSAVMDKLKPKYENCH 429
RFR+LKLW V+R YGV NL+ +R H N AK F L +D R +A ++
Sbjct: 353 RFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEIN---------- 402
Query: 430 SQQLVTEEEAINEFNRELLESINASGKAYMTHAVCGGIYAMRFAVGATLTEERHVMVAWT 489
+ + NE N LL+ IN G ++ A +Y +R A+ + T+ + +W
Sbjct: 403 MGLVCFRLKGSNERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWK 462
Query: 490 MV 491
V
Sbjct: 463 EV 464
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 91/363 (25%), Positives = 164/363 (45%), Gaps = 14/363 (3%)
Query: 68 NPESMETILQDVQEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISS 127
+PES+E IL D ++ + GV P +F + I G GE L+S N F + +
Sbjct: 72 HPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIA 130
Query: 128 PAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI--- 184
P +E I + + +++ S +G G+ + + ++ AAR + ++
Sbjct: 131 PVFVLMEQITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTK 185
Query: 185 GRENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDV 244
G + KLV++ S+Q+H +++KA +G N IK + + P +I
Sbjct: 186 GMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGK--IIPADFEAKILEAK 243
Query: 245 EAGLVPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDG 304
+ G VP ++ AT GTT A DP++ + D+ +++ +W+HVDAA+ G + + +H ++G
Sbjct: 244 QKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNG 303
Query: 305 VEGADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQ 364
+E A+S + N H L C + VK+ L + YL + D D
Sbjct: 304 IERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKA 363
Query: 365 ITLSRRFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKRVSPSAVMDKLKPK 424
I R K WL+ + G + + + +A E L A K ++ +P+
Sbjct: 364 IQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELA---EYLYAKIKNREEFEMVFNGEPE 420
Query: 425 YEN 427
+ N
Sbjct: 421 HTN 423
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/363 (25%), Positives = 163/363 (44%), Gaps = 14/363 (3%)
Query: 68 NPESMETILQDVQEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISS 127
+PES+E IL D ++ + GV P +F + I G GE L+S N F + +
Sbjct: 69 HPESLEQILVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIA 127
Query: 128 PAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI--- 184
P +E I + + +++ S +G G+ + + ++ AAR + ++
Sbjct: 128 PVFVLMEQITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTK 182
Query: 185 GRENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDV 244
G + KLV++ S+Q+H +++KA +G N IK + + P +I
Sbjct: 183 GMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGK--IIPADFEAKILEAK 240
Query: 245 EAGLVPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDG 304
+ G VP ++ AT GTT A DP++ + D+ +++ +W+HVDAA+ G + + +H ++G
Sbjct: 241 QKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNG 300
Query: 305 VEGADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQ 364
+E A+S + N H L C + VK+ L YL + D D
Sbjct: 301 IERANSVTWNPHXMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKA 360
Query: 365 ITLSRRFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKRVSPSAVMDKLKPK 424
I R K WL+ + G + + + +A E L A K ++ +P+
Sbjct: 361 IQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELA---EYLYAKIKNREEFEMVFNGEPE 417
Query: 425 YEN 427
+ N
Sbjct: 418 HTN 420
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/351 (25%), Positives = 150/351 (42%), Gaps = 12/351 (3%)
Query: 53 EPGYLRKRLPECAPYNPESMETILQDVQEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEM 112
EP L++ L ES + IL+ + I V P +F S G +
Sbjct: 70 EPEELKQLLDLELRSQGESQKQILERCRAVIRYSVKTGH-PRFFNQLFSGLDPHALAGRI 128
Query: 113 LSSGFNVVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCT 172
++ N + + +P +E V+ KL +S G G + +
Sbjct: 129 ITESLNTSQYTYEIAPVFVLMEEEVLR------KLRALVGWSSGDGIFCPGGSISNMYAV 182
Query: 173 LTAARDRV--LNKIGRENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYG 230
A R + G + L ++ S + H ++QK A +G+ + R +K +
Sbjct: 183 NLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKADERGK-- 240
Query: 231 LSPDSLLTQINLDVEAGLVPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAG 290
+ P+ L QI + G VP + AT GTT + A DPL+ + DV ++ G+W+HVDAA+ G
Sbjct: 241 MVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGG 300
Query: 291 SACICPEFQHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSL-STNPEYLKN 349
S + +H +DG++ ADS + N HK L C L ++D S L+ + YL
Sbjct: 301 SVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQ 360
Query: 350 KATESKQVVDYKDWQITLSRRFRSLKLWLVIRNYGVANLRHFLRSHVNMAK 400
+ +D D + RR LKLWL+ + G L + +A+
Sbjct: 361 QDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLAR 411
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 118 bits (296), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 87/363 (23%), Positives = 157/363 (43%), Gaps = 14/363 (3%)
Query: 68 NPESMETILQDVQEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISS 127
P+++E IL Q + + P YF + + G + L+S N F + +
Sbjct: 65 QPQNLEEILMHCQTTLKYAIKT-GHPRYFNQLSTGLDMVGLAADWLTSTANTNMFTYEIA 123
Query: 128 PAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI--- 184
P LE + + + +++ P G+G G+ + + + AR ++ ++
Sbjct: 124 PVFVLLEYVTLKKMREIIGWP-----GGSGDGIFSPGGAISNMYAMMIARFKMFPEVKEK 178
Query: 185 GRENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDV 244
G + +L+ + S+ +H +L+K A +GI + IK + + P L +I
Sbjct: 179 GMAALPRLIAFTSEHSHFSLKKGAAALGIGTDSVILIKCDERGK--MIPSDLERRILEAK 236
Query: 245 EAGLVPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDG 304
+ G VP + AT GTT A DPL + D+ K++ IW+HVDAA+ G + + + + G
Sbjct: 237 QKGFVPFLVSATAGTTVYGAFDPLLAVADICKKYKIWMHVDAAWGGGLLMSRKHKWKLSG 296
Query: 305 VEGADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQ 364
VE A+S + N H L C L V++ + + + YL + D D
Sbjct: 297 VERANSVTWNPHXMMGVPLQCSALLVREEGLMQNCNQMHASYLFQQDKHYDLSYDTGDKA 356
Query: 365 ITLSRRFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKRVSPSAVMDKLKPK 424
+ R KLWL+ R G + + +A+ ++ + R V D KP+
Sbjct: 357 LQCGRHVDVFKLWLMWRAKGTTGFEAHVDKCLELAEYLYNIIKN--REGYEMVFDG-KPQ 413
Query: 425 YEN 427
+ N
Sbjct: 414 HTN 416
>pdb|2QMA|A Chain A, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
pdb|2QMA|B Chain B, Crystal Structure Of Glutamate Decarboxylase Domain Of
Diaminobutyrate-Pyruvate Transaminase And
L-2,4-Diaminobutyrate Decarboxylase From Vibrio
Parahaemolyticus
Length = 497
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 102/417 (24%), Positives = 173/417 (41%), Gaps = 38/417 (9%)
Query: 72 METILQDVQEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISSPAAT 131
+++++ DV E + Q P+ A+ + E + N +W + +AT
Sbjct: 80 LKSVIDDVAELVAKNAIFTQHPDCIAHLHTPPLXPAVAAEAXIAALNQSXDSWDQASSAT 139
Query: 132 ELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENI-- 189
+E V++WL L S G+ ++ L ARD + +K+ +I
Sbjct: 140 YVEQKVVNWLCDKYDL------SEKADGIFTSGGTQSNQXGLXLARDWIADKLSGHSIQK 193
Query: 190 -------SKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINL 242
KL + S ++H +QK+A G+ K A+ T +++ G + L ++
Sbjct: 194 LGLPDYADKLRIVCSKKSHFTVQKSASWXGLGEK---AVXTVDANADGTXDITKLDEVIA 250
Query: 243 DVEA-GLVPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHF 301
+A GL+P + T GTT A+D L + D A + W HVD AY G A I +
Sbjct: 251 QAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADXAVKHDXWXHVDGAYGG-ALILSSHKSR 309
Query: 302 IDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYK 361
+ GVE A S S++ HK F+ T+ C L V D S L + +YL + E +VD
Sbjct: 310 LKGVERAHSISVDFHKLFYQTISCGALLVNDKSNF-KFLLHHADYLNREHDELPNLVDK- 367
Query: 362 DWQITLSRRFRSLKLWLVIRNYGVANL----RHFLRSHVNMAKLFERLVASDKRVSPSAV 417
I ++RF +LK++ +N G L H L + +A + PS
Sbjct: 368 --SIATTKRFDALKVFXTXQNVGPKALGDXYDHLLAQTLEVADXIRTNDQFELLAEPSLS 425
Query: 418 MDKLKPKYENCHSQQLVTEEEAINEFNRELLESINASGKAYMTHAVCGGIYAMRFAV 474
+ +E ++E N+ L G A + + G A++F +
Sbjct: 426 TVLFRATHETAD----------LDELNKALRLEALTRGIAVLGETIVDGKTALKFTI 472
>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
pdb|3F9T|B Chain B, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec
4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At
2.11 A Resolution
Length = 397
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 258 GTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVE-------GADS 310
GTT + +D ++ L +AK+ I++HVDAA+ G + ++ GV G DS
Sbjct: 180 GTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDS 239
Query: 311 FSLNAHK 317
+++ HK
Sbjct: 240 ITIDPHK 246
>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 72/197 (36%), Gaps = 35/197 (17%)
Query: 157 GGGVIQGTTC--------EAILCTLTAARDRVLNKIGRENISKLVVYGSDQTHCALQKAA 208
GG GT C E++L + RD G +V + H A KAA
Sbjct: 157 GGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSA---HAAFDKAA 213
Query: 209 QIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQI--NLDVEAGLVPLFLCATIGTTAITAVD 266
Q GI L ++T + Y ++ I N V AG P + VD
Sbjct: 214 QYFGIKL-----VRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGV--------VD 260
Query: 267 PLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQH-------FIDGVEGADSFSLNAHKWF 319
P+ + +A + GI HVDA G I P + F +EG S S + HK+
Sbjct: 261 PIPEIAALAAEHGIGCHVDACLGG--FILPWAERLGYPVPPFDFRLEGVTSVSADTHKYG 318
Query: 320 FTTLDCCCLWVKDPSAL 336
+ + + P L
Sbjct: 319 YGAKGTSVILYRRPDLL 335
>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
pdb|3MBB|B Chain B, Crystal Structure Of Stspl - Apo Form, After Treatment
With Semicarbazide
Length = 514
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 71/197 (36%), Gaps = 35/197 (17%)
Query: 157 GGGVIQGTTC--------EAILCTLTAARDRVLNKIGRENISKLVVYGSDQTHCALQKAA 208
GG GT C E++L + RD G +V + H A KAA
Sbjct: 153 GGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSA---HAAFDKAA 209
Query: 209 QIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQI--NLDVEAGLVPLFLCATIGTTAITAVD 266
Q GI L ++T + Y ++ I N V AG P VD
Sbjct: 210 QYFGIKL-----VRTPLDADYRADVAAMREAITPNTVVVAGSAP--------GXPHGVVD 256
Query: 267 PLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQH-------FIDGVEGADSFSLNAHKWF 319
P+ + +A + GI HVDA G I P + F +EG S S + HK+
Sbjct: 257 PIPEIAALAAEHGIGCHVDACLGG--FILPWAERLGYPVPPFDFRLEGVTSVSADTHKYG 314
Query: 320 FTTLDCCCLWVKDPSAL 336
+ + + P L
Sbjct: 315 YGAKGTSVILYRRPDLL 331
>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form)
Length = 518
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 71/197 (36%), Gaps = 35/197 (17%)
Query: 157 GGGVIQGTTC--------EAILCTLTAARDRVLNKIGRENISKLVVYGSDQTHCALQKAA 208
GG GT C E++L + RD G +V + H A KAA
Sbjct: 157 GGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSA---HAAFDKAA 213
Query: 209 QIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQI--NLDVEAGLVPLFLCATIGTTAITAVD 266
Q GI L ++T + Y ++ I N V AG P + VD
Sbjct: 214 QYFGIKL-----VRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGV--------VD 260
Query: 267 PLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQH-------FIDGVEGADSFSLNAHKWF 319
P+ + +A + GI HVDA G I P + F +EG S S + H +
Sbjct: 261 PIPEIAALAAEHGIGCHVDACLGG--FILPWAERLGYPVPPFDFRLEGVTSVSADTHXYG 318
Query: 320 FTTLDCCCLWVKDPSAL 336
+ + + P L
Sbjct: 319 YGAKGTSVILYRRPDLL 335
>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|B Chain B, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|C Chain C, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
pdb|3MAU|D Chain D, Crystal Structure Of Stspl In Complex With
Phosphoethanolamine
Length = 514
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 71/197 (36%), Gaps = 35/197 (17%)
Query: 157 GGGVIQGTTC--------EAILCTLTAARDRVLNKIGRENISKLVVYGSDQTHCALQKAA 208
GG GT C E++L + RD G +V + H A KAA
Sbjct: 153 GGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSA---HAAFDKAA 209
Query: 209 QIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQI--NLDVEAGLVPLFLCATIGTTAITAVD 266
Q GI L ++T + Y ++ I N V AG P + VD
Sbjct: 210 QYFGIKL-----VRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGV--------VD 256
Query: 267 PLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQH-------FIDGVEGADSFSLNAHKWF 319
P+ + +A + GI HVDA G I P + F +EG S S + H +
Sbjct: 257 PIPEIAALAAEHGIGCHVDACLGG--FILPWAERLGYPVPPFDFRLEGVTSVSADTHAYG 314
Query: 320 FTTLDCCCLWVKDPSAL 336
+ + + P L
Sbjct: 315 YGAKGTSVILYRRPDLL 331
>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form)
pdb|3MAD|B Chain B, Crystal Structure Of Stspl (Symmetric Form)
Length = 514
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 71/197 (36%), Gaps = 35/197 (17%)
Query: 157 GGGVIQGTTC--------EAILCTLTAARDRVLNKIGRENISKLVVYGSDQTHCALQKAA 208
GG GT C E++L + RD G +V + H A KAA
Sbjct: 153 GGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSA---HAAFDKAA 209
Query: 209 QIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQI--NLDVEAGLVPLFLCATIGTTAITAVD 266
Q GI L ++T + Y ++ I N V AG P + VD
Sbjct: 210 QYFGIKL-----VRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGV--------VD 256
Query: 267 PLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQH-------FIDGVEGADSFSLNAHKWF 319
P+ + +A + GI HVDA G I P + F +EG S S + H +
Sbjct: 257 PIPEIAALAAEHGIGCHVDACLGG--FILPWAERLGYPVPPFDFRLEGVTSVSADTHXYG 314
Query: 320 FTTLDCCCLWVKDPSAL 336
+ + + P L
Sbjct: 315 YGAKGTSVILYRRPDLL 331
>pdb|2FM1|A Chain A, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|B Chain B, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|C Chain C, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
pdb|2FM1|D Chain D, Crystal Structure Of L-allo-threonine Aldolase (tm1744)
From Thermotoga Maritima At 2.25 A Resolution
Length = 355
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 262 ITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIC-----PEFQHFIDGV 305
+ ++ +K +C +AK+ GI VH+D A +A I E+ + D V
Sbjct: 157 VVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSV 205
>pdb|1JG8|A Chain A, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|B Chain B, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|C Chain C, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1JG8|D Chain D, Crystal Structure Of Threonine Aldolase (Low-Specificity)
pdb|1M6S|A Chain A, Crystal Structure Of Threonine Aldolase
pdb|1M6S|B Chain B, Crystal Structure Of Threonine Aldolase
pdb|1M6S|C Chain C, Crystal Structure Of Threonine Aldolase
pdb|1M6S|D Chain D, Crystal Structure Of Threonine Aldolase
Length = 347
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 262 ITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIC 295
+ ++ +K +C +AK+ GI VH+D A +A I
Sbjct: 149 VVPLENIKEICTIAKEHGINVHIDGARIFNASIA 182
>pdb|1LW4|A Chain A, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|B Chain B, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|C Chain C, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW4|D Chain D, X-Ray Structure Of L-Threonine Aldolase (Low-Specificity)
In Complex With L-Allo-Threonine
pdb|1LW5|A Chain A, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|B Chain B, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|C Chain C, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
pdb|1LW5|D Chain D, X-ray Structure Of L-threonine Aldolase (low-specificity)
In Complex With Glycine
Length = 347
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 262 ITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACIC 295
+ ++ +K +C +AK+ GI VH+D A +A I
Sbjct: 149 VVPLENIKEICTIAKEHGINVHIDGARIFNASIA 182
>pdb|1VK4|A Chain A, Crystal Structure Of Pfkb Carbohydrate Kinase (tm0415)
From Thermotoga Maritima At 1.91 A Resolution
Length = 298
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 16/79 (20%)
Query: 157 GGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLVVYGSDQTHCALQKAAQIVGIDLK 216
GGGV+ G AI +L + +V+ K RE++SK + K+ + I+
Sbjct: 36 GGGVVXG----AITSSLLGVKTKVITKCTREDVSKFSFLRDNGVEVVFLKSPRTTSIE-- 89
Query: 217 NFRAIKTTKSSSYGLSPDS 235
+ YG PD+
Sbjct: 90 ----------NRYGSDPDT 98
>pdb|2BWO|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWO|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
pdb|2BWP|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
pdb|2BWP|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Glycine
Length = 401
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 267 PLKPLCDVAKQFGIWVHVDAAYA 289
P+K +CD+A++FG ++D +A
Sbjct: 196 PIKEICDIAEEFGALTYIDEVHA 218
>pdb|2BWN|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|D Chain D, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWN|E Chain E, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus
pdb|2BWO|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In
Complex With Succinyl-Coa
Length = 401
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 267 PLKPLCDVAKQFGIWVHVDAAYA 289
P+K +CD+A++FG ++D +A
Sbjct: 196 PIKEICDIAEEFGALTYIDEVHA 218
>pdb|3PI6|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
pdb|3PI6|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H177y Mutation
Length = 301
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 38 DYYKNVDKYPVRSQVEPGYLRKRLPECA----------PYNPESMETILQDVQEHIVPGV 87
+YY+ +++ VR E R ++P + E M+ +DV+ H++PG
Sbjct: 213 EYYRALNE-SVRQNAELAKTRLQMPTMTLAGGGHGGMGTFQLEQMKAYAEDVEGHVLPGC 271
Query: 88 THW 90
HW
Sbjct: 272 GHW 274
>pdb|3KD2|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif
pdb|3KD2|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif
Length = 301
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 38 DYYKNVDKYPVRSQVEPGYLRKRLPECA----------PYNPESMETILQDVQEHIVPGV 87
+YY+ +++ VR E R ++P + E M+ +DV+ H++PG
Sbjct: 213 EYYRALNE-SVRQNAELAKTRLQMPTMTLAGGGHGGMGTFQLEQMKAYAEDVEGHVLPGC 271
Query: 88 THW 90
HW
Sbjct: 272 GHW 274
>pdb|3KDA|A Chain A, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|B Chain B, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|C Chain C, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
pdb|3KDA|D Chain D, Crystal Structure Of The Cftr Inhibitory Factor Cif With
The H269a Mutation
Length = 301
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 38 DYYKNVDKYPVRSQVEPGYLRKRLPECA----------PYNPESMETILQDVQEHIVPGV 87
+YY+ +++ VR E R ++P + E M+ +DV+ H++PG
Sbjct: 213 EYYRALNE-SVRQNAELAKTRLQMPTMTLAGGGAGGMGTFQLEQMKAYAEDVEGHVLPGC 271
Query: 88 THW 90
HW
Sbjct: 272 GHW 274
>pdb|4EU1|A Chain A, Structure Of A Mitochondrial Aspartate Aminotransferase
From Trypanosoma Brucei
pdb|4EU1|B Chain B, Structure Of A Mitochondrial Aspartate Aminotransferase
From Trypanosoma Brucei
Length = 409
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 16/145 (11%)
Query: 183 KIGRENISKLV-----VYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLL 237
+IG + +++ V +YG D + + G++L + ++ GL+ +L
Sbjct: 118 RIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGMELTPY---SYYDPATKGLNLAGML 174
Query: 238 TQINLDVEAGLVPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPE 297
++ E ++ + CA T D + +CDV K+ VD AY G A +
Sbjct: 175 ECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLD 234
Query: 298 F-----QHFIDGVEG---ADSFSLN 314
+ +H +D V A SFS N
Sbjct: 235 YDAFVPRHLVDMVPNLIVAQSFSXN 259
>pdb|2CRP|A Chain A, Solution Structure Of The Rgs Domain Of Regulator Of G-
Protein Signalling 5 (Rgs 5)
Length = 150
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 338 SSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWLVIRNYGVANLRHFLRSHVN 397
SS S+ PE K T+ + + W+ +L + L+ NYG+A+ + FL+S +
Sbjct: 2 SSGSSGPE--KPAKTQKTSLDEALQWRDSLDK--------LLQNNYGLASFKSFLKSEFS 51
Query: 398 MAKLFERLVASD--KRVSPSAVMDKLKPKYENCHSQQLVTEEEAINEFNREL 447
L + D K SP+ + +K K YE Q +E I+ F +++
Sbjct: 52 EENLEFWIACEDYKKIKSPAKMAEKAKQIYEE-FIQTEAPKEVNIDHFTKDI 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,089,921
Number of Sequences: 62578
Number of extensions: 618928
Number of successful extensions: 1536
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1479
Number of HSP's gapped (non-prelim): 30
length of query: 506
length of database: 14,973,337
effective HSP length: 103
effective length of query: 403
effective length of database: 8,527,803
effective search space: 3436704609
effective search space used: 3436704609
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)