RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 048643
(506 letters)
>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase.
Length = 490
Score = 674 bits (1740), Expect = 0.0
Identities = 288/497 (57%), Positives = 372/497 (74%), Gaps = 15/497 (3%)
Query: 11 GNSGLVINPLDPEEFRRQAHMVIDFIADYYKNVDKYPVRSQVEPGYLRKRLPECAPYNPE 70
G + P+D E+ R H ++DFIADYYK+++ +PV SQV+PGYLR+ LP+ AP PE
Sbjct: 1 GGGEEWLRPMDAEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPE 60
Query: 71 SMETILQDVQEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISSPAA 130
+++ +L DVQ I+PGVTHWQSPNYFAY+PS+ S+AGFLGEMLS+G N+VGF+WI+SPAA
Sbjct: 61 TLDQVLDDVQAKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSPAA 120
Query: 131 TELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENIS 190
TELE IV+DWL ++L LP+ FL +GNGGGVIQGT EA+L L AARDRVL K+G+ +
Sbjct: 121 TELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALE 180
Query: 191 KLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLVP 250
KLVVY SDQTH ALQKA QI GI +N R +KT S++Y L+P+ L I+ D+ +GL+P
Sbjct: 181 KLVVYASDQTHSALQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIP 240
Query: 251 LFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVEGADS 310
FLCAT+GTT+ TAVDPL L +AK G+W HVDAAYAGSACICPE++H+IDGVE ADS
Sbjct: 241 FFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADS 300
Query: 311 FSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQITLSRR 370
F++NAHKWF T DC LWVKD +AL+ SLSTNPE+LKNKA+++ VVDYKDWQI L RR
Sbjct: 301 FNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRR 360
Query: 371 FRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKR---VSP---SAVMDKLKPK 424
FRSLKLW+V+R YGV NL+ ++R+H+ +AK FE+LVA D R V+P S V +L P
Sbjct: 361 FRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTPRIFSLVCFRLVPP 420
Query: 425 YENCHSQQLVTEEEAINEFNRELLESINASGKAYMTHAVCGGIYAMRFAVGATLTEERHV 484
N E+ N+ N +LL+++N+SGK +++H V G Y +RFAVGA LTEERHV
Sbjct: 421 KNN---------EDNGNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHV 471
Query: 485 MVAWTMVQEQLEAFLTT 501
AW ++Q++ L
Sbjct: 472 TAAWKVLQDEASKLLGK 488
>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase.
Length = 539
Score = 577 bits (1487), Expect = 0.0
Identities = 267/498 (53%), Positives = 363/498 (72%), Gaps = 13/498 (2%)
Query: 8 QLDGNSGLVINPLDPEEFRRQAHMVIDFIADYYKNVDK----YPVRSQVEPGYLRKRLPE 63
+ +G + + P+D E R Q H+++DFIADYYKN+ +PV SQV+PGYLR LP+
Sbjct: 42 KANGAKVVKMKPMDSELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPD 101
Query: 64 CAPYNPESMETILQDVQEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFN 123
AP PES++ +L DV + I+PG+THWQSP+YFAY+ SS S+AGFLGEML++G +VVGF
Sbjct: 102 SAPERPESLKELLDDVSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFT 161
Query: 124 WISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNK 183
W++SPAATELE IV+DWL ++L+LP FL +GNGGGVIQGT CEA+L + AARDR+L K
Sbjct: 162 WLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKK 221
Query: 184 IGRENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLD 243
+G+ + +LVVYGSDQTH + +KA I GI +N R +KT S++YG+ P+SL I+ D
Sbjct: 222 VGKTLLPQLVVYGSDQTHSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHD 281
Query: 244 VEAGLVPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFID 303
+ G +P F+CAT+GTT+ AVDPL PL ++AK++GIW+HVDAAYAG+ACICPE++ FID
Sbjct: 282 LAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFID 341
Query: 304 GVEGADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDW 363
G+E ADSF++NAHKW F C LWVKD +L+ +L TNPEYL+ K ++ VV+YKDW
Sbjct: 342 GIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDW 401
Query: 364 QITLSRRFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKRVSPSAVMDKLKP 423
QI+LSRRFRSLKLW+V+R YG NLR+F+R HVN+AK FE VA D + +
Sbjct: 402 QISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPS------FEVVTT 455
Query: 424 KYENCHSQQLVT---EEEAINEFNRELLESINASGKAYMTHAVCGGIYAMRFAVGATLTE 480
+Y + +L +E+ NE NRELL ++N++GK +++H G + +RFAVGA LTE
Sbjct: 456 RYFSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTE 515
Query: 481 ERHVMVAWTMVQEQLEAF 498
E+HV AW ++Q+ F
Sbjct: 516 EKHVTEAWQIIQKHASKF 533
>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase
conserved domain.
Length = 373
Score = 479 bits (1236), Expect = e-168
Identities = 189/361 (52%), Positives = 241/361 (66%), Gaps = 8/361 (2%)
Query: 54 PGYLRKRLPECAPYNPESMETILQDVQEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEML 113
PGYLR LPE AP PE + IL D++++I+PGVT W SPN+ AYFP+ S LG+ML
Sbjct: 1 PGYLRPLLPEAAPIIPEPLLDILGDIRKNIMPGVTTWHSPNFHAYFPAGNSYPSLLGDML 60
Query: 114 SSGFNVVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTL 173
S N GF W SSPA TELEN+VMDWL +ML LPK FL SG GGGV+QG + E+ L L
Sbjct: 61 SDAINCNGFTWESSPACTELENVVMDWLAKMLGLPKEFLGSGEGGGVLQGGSSESNLLAL 120
Query: 174 TAARDRVLNKI---GRENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYG 230
AAR + + ++ G+ ++ KLV Y SDQ H +++KAA I G++L R I T ++
Sbjct: 121 LAARTKWIRRMKAAGKPSLGKLVAYTSDQAHSSIEKAALIAGVEL---REIPTDEN--GK 175
Query: 231 LSPDSLLTQINLDVEAGLVPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAG 290
+ L I D E GL+P F+CAT+GTT A DPL+ L D+ ++ +W+HVDAAYAG
Sbjct: 176 MRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKYDLWLHVDAAYAG 235
Query: 291 SACICPEFQHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNK 350
SA ICPEF+H++ G+E ADSFS N HKW LDC LWV+D AL +L NPEYL +
Sbjct: 236 SAFICPEFRHWLFGIERADSFSFNPHKWMLVLLDCSALWVRDKGALQQALQFNPEYLGHN 295
Query: 351 ATESKQVVDYKDWQITLSRRFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDK 410
+S VDY DWQI LSRRFR LKLW V+R+YGV L++ +R HV +AK FE LV D
Sbjct: 296 DKQSDVAVDYGDWQIPLSRRFRILKLWFVLRSYGVEGLQNQIRRHVELAKYFEALVRKDS 355
Query: 411 R 411
R
Sbjct: 356 R 356
>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to DOPA/tyrosine decarboxylase
(DDC), histidine decarboxylase (HDC), and glutamate
decarboxylase (GDC). DDC is active as a dimer and
catalyzes the decarboxylation of tyrosine. GDC catalyzes
the decarboxylation of glutamate and HDC catalyzes the
decarboxylation of histidine.
Length = 345
Score = 300 bits (771), Expect = 2e-98
Identities = 114/403 (28%), Positives = 173/403 (42%), Gaps = 73/403 (18%)
Query: 95 YFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFS 154
+ A F ++ L EML+S N + F W SPAATE+E V++WL ++ LP S
Sbjct: 1 FLAGFVTTMDPPALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLP-----S 55
Query: 155 GNGGGVIQGTTCEAILCTLTAARDRVLNK---IGRENISKLVVYGSDQTHCALQKAAQIV 211
+ GV E+ L L AARDR + G I KLV+ SDQ H +++KAA +
Sbjct: 56 EDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYL 115
Query: 212 GIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLVPLFLCATIGTTAITAVDPLKPL 271
+ R + + + P++L I+ D GL P+ + AT GTT A+DPL+ +
Sbjct: 116 DV---KVRLVPVDEDGR--MDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEI 170
Query: 272 CDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVK 331
D+A+++ +W+HVDAAY G PE +H G+E DS S++ HK+ L C + V
Sbjct: 171 ADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLV- 229
Query: 332 DPSALVSSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWLVIRNYGVANLRHF 391
R+LKLW +R +G
Sbjct: 230 ----------------------------------------RALKLWATLRRFGRDGYGEH 249
Query: 392 LRSHVNMAKLFERLVASDKRVSP------SAVMDKLKPKYENCHSQQLVTEEEAINEFNR 445
+ V++AK L+ +D S V +LKP ++E N
Sbjct: 250 IDRIVDLAKYLAELIRADPGFELLGEPNLSLVCFRLKP-------------SVKLDELNY 296
Query: 446 ELLESINASGKAYMTHAVCGGIYAMRFAVGATLTEERHVMVAW 488
+L + +N G ++ GG +RF V LT
Sbjct: 297 DLSDRLNERGGWHVPATTLGGPNVLRFVVTNPLTTRDDADALL 339
>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent
proteins [Amino acid transport and metabolism].
Length = 460
Score = 204 bits (521), Expect = 3e-60
Identities = 106/463 (22%), Positives = 175/463 (37%), Gaps = 39/463 (8%)
Query: 33 IDFIADYYKNVDKYPVRSQVEPGYLRKRLPECAPYNPESMETILQDVQE-HIVPGVTHWQ 91
ID + D K + P + AP E +E +L ++ E I +
Sbjct: 1 IDGLIDKDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDG 60
Query: 92 SPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISSPAATELENIVMDWLGQMLKLPKSF 151
P + E+L S N + SPAA ELE V++ L +L P+
Sbjct: 61 HPRANLAGFCPTRVPPVAAELLVSALNKNLGDPDESPAAAELEERVVNMLSDLLGAPEEA 120
Query: 152 LFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENI---SKLVVYGSDQTHCALQKAA 208
G G T EA L L AAR+R + E+ K + S+ H + +KAA
Sbjct: 121 S-----GTFTSGGT-EANLLALLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAA 174
Query: 209 QIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLVPLFLCATIGTTAITAVDPL 268
+ +G+ L+ + T Y + D+L I+ + G+V T GTT ++D +
Sbjct: 175 RYLGLGLRRVPTVPTD----YRIDVDALEEAIDENTIGGVV----VGTAGTTDTGSIDDI 226
Query: 269 KPLCDVAKQFGIWVHVDAAYAGSACICPEF-QHFIDGVEGADSFSLNAHKWFFTTLDCCC 327
+ L D+A+++GIW+HVDAA+ G E + G+EG DS +++ HK+ + C
Sbjct: 227 EELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGV 286
Query: 328 LWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWLVIRNYGVAN 387
+ +D AL L YL + ++ R ++L L+ +R G
Sbjct: 287 VLFRDEEALRRILIFADYYL-----PGGGIPNFTILGSRPGR--QALALYANLRRLGREG 339
Query: 388 LRHFLRSHVNMAKLFERLVASDKRVSP------SAVMDKLKPKYENCHSQQLVTEEEAIN 441
R L + +A+ + V +LK + L E ++
Sbjct: 340 YRKLLDRTLELARYLAEELEKLGDFELVNEPELPIVAFRLKDDED-----TLADLSERLD 394
Query: 442 EFNRELLESINASGKAY--MTHAVCGGIYAMRFAVGATLTEER 482
++ + G A TH A E
Sbjct: 395 RRGWQVPAQLLPKGLAIVFGTHVTGRQGLKFIVANLLITDREE 437
>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate
1-decarboxylase. This enzyme is proposed here to be a
form of aspartate 1-decarboxylase, pyridoxal-dependent,
that represents a non-orthologous displacement to the
more widely distributed pyruvoyl-dependent form
(TIGR00223). Aspartate 1-decarboxylase makes
beta-alanine, used usually in pathothenate biosynthesis,
by decarboxylation from asparatate. A number of species
with the PanB and PanC enzymes, however, lack PanD. This
protein family occurs in a number of Proteobacteria that
lack PanD. This enzyme family appears to be a
pyridoxal-dependent enzyme (see pfam00282). The family
was identified by Partial Phylogenetic Profiling;
members in Geobacter sulfurreducens, G. metallireducens,
and Pseudoalteromonas atlantica are clustered with the
genes for PanB and PanC. We suggest the gene symbol panP
(panthothenate biosynthesis enzyme, Pyridoxal-dependent)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 522
Score = 94.0 bits (234), Expect = 2e-20
Identities = 90/328 (27%), Positives = 150/328 (45%), Gaps = 46/328 (14%)
Query: 50 SQVEPGYLRKRLPECAPYNPESMETILQDVQEHIVPGVTHWQSPNYFAYFPSSGSIAGFL 109
S++E + +PE + E + +L + H V H SP++ + S+ + F
Sbjct: 51 SEIEKDFSSAEIPEQPTFVSEHTQFLLDKLVAHSV----HTASPSFIGHMTSA--LPYF- 103
Query: 110 GEMLSSGFNVVGFNW-----ISSPAATELENIVMDWLGQMLKLP--------KSFLFSGN 156
ML +V N +S A T LE V LG M L + ++ S +
Sbjct: 104 --MLPLSKLMVALNQNLVKIETSKAFTPLERQV---LGMMHHLVYGQDDDFYRKWMHSAD 158
Query: 157 G--GGVIQGTTCEAILCTLTAARDRVL------NKIGRENI---------SKLVVYGSDQ 199
G G T A + L AR+R+L + RE + L + S++
Sbjct: 159 HSLGAFCSGGTV-ANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSER 217
Query: 200 THCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLVPLFLCATIGT 259
H +L KAA ++GI N AIKT ++ + D+L + E + PL + GT
Sbjct: 218 GHYSLGKAADVLGIGRDNLIAIKTDANNR--IDVDALRDKCAELAEQNIKPLAIVGVAGT 275
Query: 260 TAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVEGADSFSLNAHKWF 319
T +DPL + D+A++ G HVDAA+ G+ + ++H + G+E ADS +++AHK
Sbjct: 276 TETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQL 335
Query: 320 FTTLDCCCLWVKDPSALVSSLSTNPEYL 347
+ + + KDP AL+S++ + EY+
Sbjct: 336 YVPMGAGMVLFKDP-ALMSAIEHHAEYI 362
>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA. Members
of this protein family are the archaeal form, MnfA, of
tyrosine decarboxylase, and are involved in methanofuran
biosynthesis. Members show clear homology to the
Enterococcus form, Tdc, that is involved in tyrosine
decarboxylation for resistance to acidic conditions
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 373
Score = 74.3 bits (183), Expect = 2e-14
Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 32/233 (13%)
Query: 128 PAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRE 187
P ++E V+ LG +L LP ++ G ++ G T EA + + AA++ L + +
Sbjct: 55 PGTKKIEEEVVGSLGNLLHLPDAY------GYIVSGGT-EANIQAVRAAKN--LAREEKR 105
Query: 188 NISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAG 247
++V S H + +KAA+++G++L Y + + I+ D G
Sbjct: 106 T-PNIIVPES--AHFSFEKAAEMLGLEL-----RYAPLDEDYTVDVKDVEDLID-DNTIG 156
Query: 248 LVPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGS----ACICPEFQHFID 303
+V GTT + +D ++ L +A + GI++HVDAA+ G F
Sbjct: 157 IV-----GIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDF 211
Query: 304 GVEGADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQ 356
+ G S +++ HK + + + + S L LS + YL T KQ
Sbjct: 212 SLPGVQSITIDPHKMGLSPIPAGGILFRSKSYL-KYLSVDAPYL----TVKKQ 259
>gnl|CDD|235068 PRK02769, PRK02769, histidine decarboxylase; Provisional.
Length = 380
Score = 67.0 bits (164), Expect = 5e-12
Identities = 76/314 (24%), Positives = 135/314 (42%), Gaps = 61/314 (19%)
Query: 109 LGEMLSSGFNVVGFNWISSP----AATELENIVMDWLGQMLKLP--KSFLFSGNGGGVIQ 162
L S N G + S + + E VM++ ++ K+P +S+ + NGG
Sbjct: 39 LKRFFSFSINNCG-DPYSKSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGG---- 93
Query: 163 GTTCEAILCTLTAARDRVLNKIGRENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIK 222
E L AR+ + +Y S TH ++ K A+++ I R I
Sbjct: 94 ---TEGNLYGCYLARELFPDGT---------LYYSKDTHYSVSKIARLLRIK---SRVIT 138
Query: 223 TTKSSSYGLSPDSLLTQINLDVEAGLVPLFLCATIGTTAITAVDPLKPLCDVAKQFGI-- 280
+ + D L+++I + P + A IGTT A+D +K + ++ K+ GI
Sbjct: 139 SLPNGEIDY--DDLISKIKENKNQ---PPIIFANIGTTMTGAIDNIKEIQEILKKIGIDD 193
Query: 281 -WVHVDAAYAGSACICPEFQHFIDGV------EGADSFSLNAHKWFFTTLDCCCLWVKDP 333
++H DAA +G I P F++ +G DS +++ HK+ + + C + K
Sbjct: 194 YYIHADAALSGM--ILP----FVNNPPPFSFADGIDSIAISGHKFIGSPMPCGIVLAK-- 245
Query: 334 SALVSSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKLWLVIRNYGVANLRHFL 392
V +S + +Y + +D I+ SR +L LW IR+ G LR +
Sbjct: 246 KKYVERISVDVDY-----------IGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRV 294
Query: 393 RSHVNMAK-LFERL 405
+ ++MA+ +RL
Sbjct: 295 QHCLDMAQYAVDRL 308
>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
Length = 371
Score = 66.4 bits (163), Expect = 8e-12
Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 35/233 (15%)
Query: 128 PAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRE 187
P +LE ++ LG++L LP ++ G + G T EA + + AAR+ K +
Sbjct: 55 PGTAKLEEEAVEMLGELLHLPDAY------GYITSGGT-EANIQAVRAARNLA--KAEKP 105
Query: 188 NISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAG 247
NI VV S H + KAA ++G++L R Y + ++ I+ D G
Sbjct: 106 NI---VVPES--AHFSFDKAADMLGVEL---RRAPLDDD--YRVDVKAVEDLID-DNTIG 154
Query: 248 LVPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICP---EFQHFIDG 304
+V GTT + VDP+ L +A + GI++HVDAA+ G + P + +F
Sbjct: 155 IV-----GIAGTTELGQVDPIPELSKIALENGIFLHVDAAFGG--FVIPFLDDPPNFDFS 207
Query: 305 VEGADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQV 357
+ G DS +++ HK + + +D S L +L+ + YL T KQ
Sbjct: 208 LPGVDSITIDPHKMGLAPIPAGGILFRDESYL-DALAVDTPYL----TSKKQA 255
>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold
type I) of pyridoxal phosphate (PLP)-dependent enzymes.
PLP combines with an alpha-amino acid to form a compound
called a Schiff base or aldimine intermediate, which
depending on the reaction, is the substrate in four
kinds of reactions (1) transamination (movement of amino
groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
Structure and sequence analysis has revealed that the
PLP dependent enzymes can be classified into four major
groups of different evolutionary origin: aspartate
aminotransferase superfamily (fold type I), tryptophan
synthase beta superfamily (fold type II), alanine
racemase superfamily (fold type III), and D-amino acid
superfamily (fold type IV) and Glycogen phophorylase
family (fold type V).
Length = 170
Score = 53.2 bits (128), Expect = 3e-08
Identities = 36/171 (21%), Positives = 51/171 (29%), Gaps = 21/171 (12%)
Query: 149 KSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLVVYGSDQTHCALQKAA 208
L GN V + A L A V H +
Sbjct: 10 ARLLQPGNDKAVFVPSGTGANEAALLALL-----------GPGDEVIVDANGH-----GS 53
Query: 209 QIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLVPLFLCATIGTTAITAVDPL 268
+ G + L +A + T TT+ + PL
Sbjct: 54 RYWVAAELAGAKPVPVPVDDAGYGGLDVAILEEL--KAKPNVALIVITPNTTSGGVLVPL 111
Query: 269 KPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVEGADSFSLNAHKWF 319
K + +AK++GI + VDAA AG A P I GAD + + HK
Sbjct: 112 KEIRKIAKEYGILLLVDAASAGGASPAPG--VLIP-EGGADVVTFSLHKNL 159
>gnl|CDD|163523 TIGR03811, tyr_de_CO2_Ent, tyrosine decarboxylase, Enterococcus
type. This model represents tyrosine decarboxylases in
the family of the Enterococcus faecalis enzyme Tdc.
These enzymes often are encoded next to
tyrosine/tyramine antiporter, together comprising a
system in which tyrosine decarboxylation can protect
against exposure to acid conditions. This clade differs
from the archaeal tyrosine decarboxylases associated
with methanofuran biosynthesis [Cellular processes,
Adaptations to atypical conditions].
Length = 608
Score = 46.4 bits (110), Expect = 3e-05
Identities = 64/271 (23%), Positives = 109/271 (40%), Gaps = 56/271 (20%)
Query: 72 METILQDVQEHIVPGVTHWQSPN-YFAYFPSSG---SIAGFLGEMLSSGFNVVGFNWISS 127
M+ +L ++ + W S Y+ + S +I + ML +G NV + SS
Sbjct: 62 MKDVLDELSSRLRTESVPWHSAGRYWGHMNSETLMPAILAYNYAMLWNGNNVA---YESS 118
Query: 128 PAATELE------------------NIVMD---------WLGQMLK-LP------KSFLF 153
PA +++E +IV D W + +K LP K L
Sbjct: 119 PATSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELV 178
Query: 154 SGNGGGVIQGTTCEAILCTLTAARDRVLNKI------GRENISKLVVYGSDQT-HCALQK 206
+G + + I+ L +A D++ ++I +++ KL + QT H + K
Sbjct: 179 AGKSDWELLNMPTKEIMDLLESAGDQI-DEIKAHSARSGKDLQKLGKWLVPQTKHYSWLK 237
Query: 207 AAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLVPLFLCATIGTTAITAVD 266
AA I+GI L + I S+Y + + L I L + +G+T AVD
Sbjct: 238 AADIIGIGLD--QVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVD 295
Query: 267 PLKPLCDVAKQF---GIW--VHVDAAYAGSA 292
+ + + + GI+ +HVDAAY G
Sbjct: 296 GIDKIVALRNKLMKEGIYFYLHVDAAYGGYG 326
>gnl|CDD|166673 PLN03032, PLN03032, serine decarboxylase; Provisional.
Length = 374
Score = 45.2 bits (107), Expect = 4e-05
Identities = 57/244 (23%), Positives = 93/244 (38%), Gaps = 49/244 (20%)
Query: 184 IGRENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLD 243
+GRE ++Y S ++H ++ KAA++ ++ P +I+ D
Sbjct: 104 VGREVFPDGILYASRESHYSVFKAARMYRMEAVKV--------------PTLPSGEIDYD 149
Query: 244 -VEAGLV-----PLFLCATIGTTAITAVDPLKPLCDVAKQFGI-----WVHVDAAYAGSA 292
+E L P L IGTT AVD L + + K+ G ++H D A G
Sbjct: 150 DLERALAKNRDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLM 209
Query: 293 CICPEFQHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKAT 352
+ + S S++ HK+ + C + V +LS N EYL +
Sbjct: 210 MPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKH--VKALSQNVEYLNS--- 264
Query: 353 ESKQVVDYKDWQITLSRRFRS-LKLWLVIRNYGVANLR----------HFLRSHVNMAKL 401
+D I SR + L LW +R G ++ H+L+ + A L
Sbjct: 265 --------RDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGL 316
Query: 402 FERL 405
RL
Sbjct: 317 TCRL 320
>gnl|CDD|130848 TIGR01788, Glu-decarb-GAD, glutamate decarboxylase. This model
represents the pyridoxal phosphate-dependent glutamate
(alpha) decarboxylase found in bacteria (low and hi-GC
gram positive, proteobacteria and cyanobacteria),
plants, fungi and at least one archaon (Methanosarcina).
The product of the enzyme is gamma-aminobutyrate (GABA).
Length = 431
Score = 37.4 bits (87), Expect = 0.014
Identities = 52/255 (20%), Positives = 90/255 (35%), Gaps = 61/255 (23%)
Query: 123 NWISS---PAATELENIVMDWLGQMLKLPKSFLFSGNGG-----GVIQGTTCEAILCTLT 174
N I P E+EN ++ L L+ G + EAI+
Sbjct: 68 NMIDKDEYPQTAEIENRCVNMLAD--------LWHAPAKDAEAVGTSTIGSSEAIMLGGL 119
Query: 175 AARDRVLNK-------IGRENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSS 227
A + R + + N+ V GS+ +K A+ ++L R +
Sbjct: 120 AMKWRWRKRMEAAGKPTDKPNL----VMGSN-VQVCWEKFARYFDVEL---REVPMDPGR 171
Query: 228 SYGLSPDSLLTQINLDVEAGLVPLFLCATIGTTAITAVDPLKPLCDVAKQFG------IW 281
Y + P+ ++ ++ + + + +GTT + +K L D ++ I
Sbjct: 172 -YVIDPEQVVEAVDENT------IGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIP 224
Query: 282 VHVDAAYAGSACICPEFQHFIDGVEGAD-------SFSLNAHKWFFTTLDCCCLWV--KD 332
+HVDAA G I P F+ D S +++ HK+ WV +D
Sbjct: 225 IHVDAASGG--FIAP----FVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVG--WVIWRD 276
Query: 333 PSALVSSLSTNPEYL 347
AL L + YL
Sbjct: 277 EEALPEELIFHVNYL 291
>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase
[Posttranslational modification, protein turnover,
chaperones].
Length = 405
Score = 37.3 bits (87), Expect = 0.019
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 267 PLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHF-ID-GVEGADSFSLNAHKWFFTTLD 324
P+K + ++A + G V VDAA A H ID G D + + HKW
Sbjct: 180 PVKEIAELAHEHGALVLVDAAQA--------AGHLPIDVQELGCDFLAFSGHKWLLGPTG 231
Query: 325 CCCLWVKD 332
L+V+
Sbjct: 232 IGVLYVRK 239
>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase
and related enzymes [Amino acid transport and
metabolism].
Length = 386
Score = 34.8 bits (81), Expect = 0.099
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 13/63 (20%)
Query: 257 IGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYA-GSACICPEFQHFIDGVEGADSFSLNA 315
GT + P+ + ++ K+ GI HVDA A G I E G D S +A
Sbjct: 154 TGT-----IQPIAEIGEICKERGILFHVDAVQAVGKIPIDLE-------ELGVDLLSFSA 201
Query: 316 HKW 318
HK+
Sbjct: 202 HKF 204
>gnl|CDD|237836 PRK14855, nhaA, pH-dependent sodium/proton antiporter; Provisional.
Length = 423
Score = 34.5 bits (79), Expect = 0.12
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 25/104 (24%)
Query: 47 PVRSQVEPGYLRKRLPECAPYNPESMETILQDVQ-------------EHIV-PGVTHWQS 92
P+R + YL L AP PE + L+D++ EH + P T
Sbjct: 241 PIRRRDPLPYLASLLDAAAPGRPEVVGARLRDLEDLLERAQSPLHRLEHALHPWSTFLIL 300
Query: 93 PNYFAYFPSSGSIAG----------FLGEMLSSGFNVVGFNWIS 126
P FA F + S++G FLG +L VVG W++
Sbjct: 301 P-VFALFNAGVSVSGGGLGTVSLGVFLGLLLGKPLGVVGGAWLA 343
>gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein,
VC1184 subfamily. This model describes a subfamily of
probable pyridoxal phosphate-dependent enzymes in the
aminotransferase class V family (pfam00266). The most
closely related characterized proteins are active as
cysteine desulfurases, selenocysteine lyases, or both;
some are involved in FeS cofactor biosynthesis and are
designated NifS. An active site Cys residue present in
those sequences, in motifs resembling GHHC or GSAC, is
not found in this family. The function of members of
this family is unknown, but seems unlike to be as an
aminotransferase [Unknown function, Enzymes of unknown
specificity].
Length = 397
Score = 33.6 bits (77), Expect = 0.21
Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 11/73 (15%)
Query: 263 TAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVE-GADSFSLNAHKWFFT 321
+ VD L + ++ G V VDA + ID GAD + +A+K+F
Sbjct: 171 SIVD-LAAITELVHAAGALVVVDAVHYAP-------HGLIDVQATGADFLTCSAYKFFGP 222
Query: 322 TLDCCCLWVKDPS 334
+ LW +
Sbjct: 223 HMG--ILWGRPEL 233
>gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal
phosphate (PLP)-dependent aspartate aminotransferase
superfamily (fold I). The major groups in this CD
corresponds to serine palmitoyltransferase (SPT),
5-aminolevulinate synthase (ALAS),
8-amino-7-oxononanoate synthase (AONS), and
2-amino-3-ketobutyrate CoA ligase (KBL). SPT is
responsible for the condensation of L-serine with
palmitoyl-CoA to produce 3-ketodihydrospingosine, the
reaction of the first step in sphingolipid biosynthesis.
ALAS is involved in heme biosynthesis; it catalyzes the
synthesis of 5-aminolevulinic acid from glycine and
succinyl-coenzyme A. AONS catalyses the decarboxylative
condensation of l-alanine and pimeloyl-CoA in the first
committed step of biotin biosynthesis. KBL catalyzes the
second reaction step of the metabolic degradation
pathway for threonine converting 2-amino-3-ketobutyrate,
to glycine and acetyl-CoA. The members of this CD are
widely found in all three forms of life.
Length = 349
Score = 32.5 bits (75), Expect = 0.54
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 267 PLKPLCDVAKQFGIWVHVDAAYA 289
PL L D+AK++G + VD A++
Sbjct: 150 PLPELVDLAKKYGAILFVDEAHS 172
>gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA). This
family belongs to pyridoxal phosphate (PLP)-dependent
aspartate aminotransferase superfamily (fold I). TA
catalyzes the conversion of L-threonine or
L-allo-threonine to glycine and acetaldehyde in a
secondary glycine biosynthetic pathway.
Length = 338
Score = 32.3 bits (74), Expect = 0.60
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 18/93 (19%)
Query: 231 LSPDSLLTQINLD-----VEAGLVPLFLCATIGTTAIT--AVDPLKPLCDVAKQFGIWVH 283
L+P+ L I LV T T +D LK + +AK+ G+ +H
Sbjct: 108 LTPEDLEAAIRPRDDIHFPPPSLV----SLENTTEGGTVYPLDELKAISALAKENGLPLH 163
Query: 284 VDAAYAGSACI---CPEFQHFIDGVEGADSFSL 313
+D A +A + G DS S
Sbjct: 164 LDGARLANAAAALGVALKTY----KSGVDSVSF 192
>gnl|CDD|115288 pfam06618, DUF1148, Protein of unknown function (DUF1148). This
family consists of several Maize streak virus proteins
of unknown function.
Length = 114
Score = 30.8 bits (69), Expect = 0.62
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 301 FIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQ 356
F+ V+ AD S +KW L C +++D A + SLST L+ A S Q
Sbjct: 58 FLLDVDMADCLSRAWNKWPGIALTWWCWYIRDRVAPIHSLSTKYHLLRGSALASLQ 113
>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V. This domain is
found in amino transferases, and other enzymes including
cysteine desulphurase EC:4.4.1.-.
Length = 370
Score = 32.2 bits (74), Expect = 0.63
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 265 VDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHF-IDGVE-GADSFSLNAHK 317
V+P++ + +A ++G V VDAA A H ID G D + + HK
Sbjct: 155 VNPVEEIGKLAHEYGALVVVDAAQA--------VGHRPIDVQALGVDFLAFSGHK 201
>gnl|CDD|200454 cd11315, AmyAc_bac1_AmyA, Alpha amylase catalytic domain found in
bacterial Alpha-amylases (also called
1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC
3.2.1.1) catalyzes the hydrolysis of alpha-(1,4)
glycosidic linkages of glycogen, starch, related
polysaccharides, and some oligosaccharides. This group
includes Firmicutes, Proteobacteria, Actinobacteria, and
Cyanobacteria. The Alpha-amylase family comprises the
largest family of glycoside hydrolases (GH), with the
majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 352
Score = 31.5 bits (72), Expect = 0.95
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 266 DPLKPLCDVAKQFGIWVHVDA 286
D K LC A ++GI + VD
Sbjct: 68 DDFKALCAAAHKYGIKIIVDV 88
>gnl|CDD|227078 COG4735, COG4735, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 211
Score = 30.9 bits (70), Expect = 1.0
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 397 NMAKLFERLVASDKRVSPSAVMDKLKPKYENCHSQQLVT---EEEAINEFNRELLESINA 453
A F R + + DKLK K + ++L T EE + + R LE +
Sbjct: 37 LSAANFLRDLGQLYKKILCDEKDKLKVKVQ----KELGTTEIEEPLLLQILRNPLEKMLK 92
Query: 454 SGKAYMTHAV 463
GKA ++
Sbjct: 93 GGKAEAVDSL 102
>gnl|CDD|177904 PLN02263, PLN02263, serine decarboxylase.
Length = 470
Score = 30.9 bits (70), Expect = 1.8
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 27/119 (22%)
Query: 184 IGRENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLT-QINL 242
+GRE ++Y S ++H ++ KAA+ + +K D+L++ +I+
Sbjct: 171 VGREVFPDGILYASRESHYSVFKAAR-----MYRMECVKV----------DTLVSGEIDC 215
Query: 243 -DVEAGLV-----PLFLCATIGTTAITAVDPLKPLCDVAKQFG-----IWVHVDAAYAG 290
D +A L+ P + IGTT AVD L + ++ G ++H D A G
Sbjct: 216 ADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFG 274
>gnl|CDD|221822 pfam12872, OST-HTH, OST-HTH/LOTUS domain. A predicted RNA-binding
domain found in insect Oskar and vertebrate TDRD5/TDRD7
proteins that nucleate or organize structurally related
ribonucleoprotein (RNP) complexes, the polar granule and
nuage, is poorly understood. The domain adopts the
winged helix-turn- helix fold and bind RNA with a
potential specificity for dsRNA.In eukaryotes this
domain is often combined in the same polypeptide with
protein-protein- or lipid- interaction domains that
might play a role in anchoring these proteins to
specific cytoskeletal structures. Thus, proteins with
this domain might have a key role in the recognition and
localization of dsRNA, including miRNAs, rasiRNAs and
piRNAs hybridized to their targets. In other cases, this
domain is fused to ubiquitin-binding, E3 ligase and
ubiquitin-like domains indicating a previously
under-appreciated role for ubiquitination in regulating
the assembly and stability of nuage-like RNP complexes.
Both bacteria and eukaryotes encode a conserved family
of proteins that combines this predicted RNA-binding
domain with a previously uncharacterized RNAse domain
belonging to the superfamily that includes the 5'->3'
nucleases, PIN and NYN domains.
Length = 74
Score = 27.6 bits (62), Expect = 2.8
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 359 DYKDWQITLSR---RFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFE 403
D W +LS +R L RNYG + L L + + LFE
Sbjct: 19 DEDGW-ASLSELGSEYRKLFPDFDPRNYGYSKLSDLLEA---IPDLFE 62
>gnl|CDD|227571 COG5246, PRP11, Splicing factor 3a, subunit 2 [RNA processing and
modification].
Length = 222
Score = 29.6 bits (66), Expect = 3.1
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 175 AARDRVLNKIGRENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPD 234
+ R + +GREN + Q +++ + GI R++ K GL
Sbjct: 83 SRRSEEKSSLGREN-QTTHDFRQQQKIIEAKQSLKRSGIPSYKVRSLVEPKGGRRGLG-- 139
Query: 235 SLLTQINL-DVEAGLVPLF 252
Q+N D A +P +
Sbjct: 140 ---IQVNYEDDLAEEMPQY 155
>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related
enzymes [Coenzyme metabolism].
Length = 388
Score = 29.9 bits (68), Expect = 3.2
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 267 PLKPLCDVAKQFGIWVHVDAAYA 289
PL L ++A+++G ++VD A+A
Sbjct: 189 PLPELVELAEKYGALLYVDEAHA 211
>gnl|CDD|238510 cd01040, globin, Globins are heme proteins, which bind and
transport oxygen. This family summarizes a diverse set
of homologous protein domains, including: (1) tetrameric
vertebrate hemoglobins, which are the major protein
component of erythrocytes and transport oxygen in the
bloodstream, (2) microorganismal flavohemoglobins, which
are linked to C-terminal FAD-dependend reductase
domains, (3) homodimeric bacterial hemoglobins, such as
from Vitreoscilla, (4) plant leghemoglobins (symbiotic
hemoglobins, involved in nitrogen metabolism in plant
rhizomes), (5) plant non-symbiotic hexacoordinate
globins and hexacoordinate globins from bacteria and
animals, such as neuroglobin, (6) invertebrate
hemoglobins, which may occur in tandem-repeat
arrangements, and (7) monomeric myoglobins found in
animal muscle tissue.
Length = 140
Score = 28.5 bits (64), Expect = 4.6
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 30/97 (30%)
Query: 23 EEFRRQAHMVIDFIADYYKNVDKYPVRSQVEPGYLRKRLPECAPYNPESMETILQD-VQE 81
+F+ V++ + + KN+D + E+++ +L ++
Sbjct: 55 PKFKAHGKRVLNALDEAIKNLD-----------------------DLEALKALLAKLGRK 91
Query: 82 HIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFN 118
H GV P +F F ++ L E+L F
Sbjct: 92 HAKRGVD----PEHFKLF--GEALLEVLAEVLGDDFT 122
>gnl|CDD|178583 PLN03006, PLN03006, carbonate dehydratase.
Length = 301
Score = 29.3 bits (65), Expect = 4.7
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 21/99 (21%)
Query: 385 VANLRHFLRSHVNMAKLFERLVASDKRVSPSAVMD-------------KLKPKYENCHSQ 431
+ + H+ A F + +D RV PSAV+ L P YE+ ++
Sbjct: 98 MDDFEHYKNLADAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTE 157
Query: 432 QLVTEEEAINEFNRELLESINASGKAYMTHAVCGGIYAM 470
E ++N N +E+I G H+ CGGI A+
Sbjct: 158 TKAALEFSVNTLN---VENILVIG-----HSRCGGIQAL 188
>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II.
Length = 357
Score = 28.8 bits (65), Expect = 7.6
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 193 VVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLVPLF 252
+ T+ + + ++ G ++ + S+ + L D+L + E V L
Sbjct: 92 AILVPAPTYPSYIRIFRLAGGEVVRYP---LYSSNDFHLDFDALEAALKEATEGNKVVLH 148
Query: 253 LCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAG 290
T + ++ L+ L D+AK+ I + VD AYAG
Sbjct: 149 TSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAG 186
>gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase;
Provisional.
Length = 397
Score = 28.6 bits (65), Expect = 8.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 267 PLKPLCDVAKQFGIWVHVDAAYA 289
PL +CD+A ++ V VD ++A
Sbjct: 192 PLPEICDLADKYDALVMVDDSHA 214
>gnl|CDD|163674 cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyase superfamily.
The DRE-TIM metallolyase superfamily includes
2-isopropylmalate synthase (IPMS), alpha-isopropylmalate
synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase,
homocitrate synthase, citramalate synthase,
4-hydroxy-2-oxovalerate aldolase, re-citrate synthase,
transcarboxylase 5S, pyruvate carboxylase, AksA, and
FrbC. These members all share a conserved
triose-phosphate isomerase (TIM) barrel domain
consisting of a core beta(8)-alpha(8) motif with the
eight parallel beta strands forming an enclosed barrel
surrounded by eight alpha helices. The domain has a
catalytic center containing a divalent cation-binding
site formed by a cluster of invariant residues that cap
the core of the barrel. In addition, the catalytic site
includes three invariant residues - an aspartate (D), an
arginine (R), and a glutamate (E) - which is the basis
for the domain name "DRE-TIM".
Length = 265
Score = 28.2 bits (64), Expect = 8.7
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 7/69 (10%)
Query: 250 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVE--- 306
+ + ++ + + AK+ G+ V A PE+ ++ +
Sbjct: 99 ETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEY--VLEVAKALE 156
Query: 307 --GADSFSL 313
GAD SL
Sbjct: 157 EAGADEISL 165
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.409
Gapped
Lambda K H
0.267 0.0795 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,818,119
Number of extensions: 2495425
Number of successful extensions: 2310
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2279
Number of HSP's successfully gapped: 40
Length of query: 506
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 405
Effective length of database: 6,457,848
Effective search space: 2615428440
Effective search space used: 2615428440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)