RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 048643
(506 letters)
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 602 bits (1553), Expect = 0.0
Identities = 193/493 (39%), Positives = 285/493 (57%), Gaps = 31/493 (6%)
Query: 20 LDPEEFRRQAHMVIDFIADYYKNVDKYPVRSQVEPGYLRKRLPECAPYNPESMETILQDV 79
++ +FRR+ ++D++ADY + ++ V V+PGYLR +P AP P++ E ILQDV
Sbjct: 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60
Query: 80 QEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISSPAATELENIVMD 139
++ I+PGVTHW SP +FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 140 WLGQMLKLPKSFLF--SGNGGGVIQGTTCEAILCTLTAARDRVLNKIGREN--------I 189
WLG+ML+LP++FL +G GGGVIQG+ EA L L AAR +V+ ++ + +
Sbjct: 121 WLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVL 180
Query: 190 SKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLV 249
KLV Y SDQ H ++++A I G+ +AI + + + +L + D AGL+
Sbjct: 181 EKLVAYASDQAHSSVERAGLIGGV---KLKAIPSD--GKFAMRASALQEALERDKAAGLI 235
Query: 250 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVEGAD 309
P F+ AT+GTT+ + D L + + + IW+HVDAAYAGSA ICPEF+H ++GVE AD
Sbjct: 236 PFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD 295
Query: 310 SFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQITLSR 369
SF+ N HKW DC +WVK + L + +P YLK+ S + DY+ WQ+ L R
Sbjct: 296 SFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGR 355
Query: 370 RFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKRVSPSAVMDKLKPKYENCH 429
RFRSLK+W V R YGV L+ ++R HV ++ FE V D P++E C
Sbjct: 356 RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD-------------PRFEVCA 402
Query: 430 SQQLVT---EEEAINEFNRELLESINASGKAYMTHAVCGGIYAMRFAVGATLTEERHVMV 486
L + + N LLE IN++ K ++ G + +RFA+ + E HV +
Sbjct: 403 EVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRL 462
Query: 487 AWTMVQEQLEAFL 499
AW ++ L
Sbjct: 463 AWEHIRGLAAELL 475
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 599 bits (1545), Expect = 0.0
Identities = 187/496 (37%), Positives = 272/496 (54%), Gaps = 34/496 (6%)
Query: 18 NPLDPEEFRRQAHMVIDFIADYYKNVDKYPVRSQVEPGYLRKRLPECAPYNPESMETILQ 77
++PEE+R + ++D+I Y V + V V+PGYLR +LPE AP +P+S ++I
Sbjct: 4 GSMEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFG 63
Query: 78 DVQEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISSPAATELENIV 137
D++ I+PGV HWQSP+ AY+P+ S LG+ML+ N +GF W SSPA TELE V
Sbjct: 64 DIERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWASSPACTELEMNV 123
Query: 138 MDWLGQMLKLPKSFLF---SGNGGGVIQGTTCEAILCTLTAARDRVLNKIGREN------ 188
MDWL +ML LP+ FL S GGGV+Q T E+ L L AAR + ++
Sbjct: 124 MDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADES 183
Query: 189 --ISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEA 246
++LV Y SDQ H +++KA I + + + ++ L ++L I D +
Sbjct: 184 SLNARLVAYASDQAHSSVEKAGLISLV---KMKFLPV--DDNFSLRGEALQKAIEEDKQR 238
Query: 247 GLVPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVE 306
GLVP+F+CAT+GTT + A D L L + + G+W+H+DAAYAG+A +CPEF+ F+ G+E
Sbjct: 239 GLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIE 298
Query: 307 GADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQIT 366
ADSF+ N KW DC WVKD L + S NP YL++ S D+ WQI
Sbjct: 299 YADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHA--NSGVATDFMHWQIP 356
Query: 367 LSRRFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKRVSPSAVMDKLKPKYE 426
LSRRFRS+KLW VIR++GV NL+ +R MAK FE LV +D P +E
Sbjct: 357 LSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND-------------PSFE 403
Query: 427 NCHSQQLVT---EEEAINEFNRELLESINASGKAYMTHAVCGGIYAMRFAVGATLTEERH 483
+ L + N +L+ I +G+ ++ A +RF V + T
Sbjct: 404 IPAKRHLGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDD 463
Query: 484 VMVAWTMVQEQLEAFL 499
++ W ++++ L
Sbjct: 464 ILRDWNLIRDAATLIL 479
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 594 bits (1532), Expect = 0.0
Identities = 189/496 (38%), Positives = 278/496 (56%), Gaps = 40/496 (8%)
Query: 20 LDPEEFRRQAHMVIDFIADYYKNVDKYPVRSQVEPGYLRKRLPECAPYNPESMETILQDV 79
++ EF+ A ++DFIA+Y +N+ + V +V+PGYL+ +P+ AP PE + ++QD+
Sbjct: 1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDI 60
Query: 80 QEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISSPAATELENIVMD 139
+ I+PGVTHW SP + AYFP++ S + +MLS +GF WI+SPA TELE ++MD
Sbjct: 61 ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTWIASPACTELEVVMMD 120
Query: 140 WLGQMLKLPKSFLFS--GNGGGVIQGTTCEAILCTLTAARDRVLNKIGREN--------I 189
WLG+ML+LP FL G GGGVIQGT E+ L L A+ + L ++ + +
Sbjct: 121 WLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTIL 180
Query: 190 SKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLV 249
KLV Y SDQ H ++++A + G+ L++ + S ++ + +L I DV GL+
Sbjct: 181 GKLVGYCSDQAHSSVERAGLLGGVKLRSVQ------SENHRMRGAALEKAIEQDVAEGLI 234
Query: 250 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVEGAD 309
P + T+GTT A D L V + +W+HVDAAYAGSA ICPE++H + G+E AD
Sbjct: 235 PFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESAD 294
Query: 310 SFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQITLSR 369
SF+ N HKW DC +W+KDPS +V++ + +P YLK+ S DY+ WQI L R
Sbjct: 295 SFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGS--APDYRHWQIPLGR 352
Query: 370 RFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKR---VSP---SAVMDKLKP 423
RFR+LKLW V+R YGV NL+ +R H N AK F L +D R + V +LK
Sbjct: 353 RFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAEINMGLVCFRLKG 412
Query: 424 KYENCHSQQLVTEEEAINEFNRELLESINASGKAYMTHAVCGGIYAMRFAVGATLTEERH 483
NE N LL+ IN G ++ A +Y +R A+ + T+
Sbjct: 413 S----------------NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSED 456
Query: 484 VMVAWTMVQEQLEAFL 499
+ +W V +
Sbjct: 457 MEYSWKEVSAAADEME 472
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 571 bits (1474), Expect = 0.0
Identities = 99/490 (20%), Positives = 192/490 (39%), Gaps = 26/490 (5%)
Query: 21 DPEEFRRQAHMVIDFIADYYKNVDK--YPVRSQVEPGYLRKRLPEC---APYNPESMETI 75
E+ + V+D + +Y + V P L + + +PES+E I
Sbjct: 17 GEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQI 76
Query: 76 LQDVQEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISSPAATELEN 135
L D ++ + GV P +F + I G GE L+S N F + +P +E
Sbjct: 77 LVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQ 135
Query: 136 IVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI---GRENISKL 192
I + + +++ S +G G+ + + ++ AAR + ++ G + KL
Sbjct: 136 ITLKKMREIVGWS-----SKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKL 190
Query: 193 VVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLVPLF 252
V++ S+Q+H +++KA +G N IK + P +I + G VP +
Sbjct: 191 VLFTSEQSHYSIKKAGAALGFGTDNVILIKCN--ERGKIIPADFEAKILEAKQKGYVPFY 248
Query: 253 LCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVEGADSFS 312
+ AT GTT A DP++ + D+ +++ +W+HVDAA+ G + + +H ++G+E A+S +
Sbjct: 249 VNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVT 308
Query: 313 LNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFR 372
N HK L C + VK+ L YL + D D I R
Sbjct: 309 WNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVD 368
Query: 373 SLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKR--------VSPSAVMDKLKPK 424
K WL+ + G + + + +A+ + + + + V P+
Sbjct: 369 IFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQ 428
Query: 425 YENCHSQQLVTEEEAINEFNRELLESINASGKAYMTHA-VCGGIYAMRFAVGATLTEERH 483
E +++ ++ + SG + + R + +
Sbjct: 429 SLR-GVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSD 487
Query: 484 VMVAWTMVQE 493
+ ++
Sbjct: 488 IDFLIEEIER 497
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 554 bits (1430), Expect = 0.0
Identities = 107/496 (21%), Positives = 188/496 (37%), Gaps = 24/496 (4%)
Query: 10 DGNSGLVINPLDPEEF-RRQAHMVIDFIADYYKNVDKYPVRSQVEPGYLRKRLPECAPYN 68
+ L +P+ E R +V+D +V + EP L++ L
Sbjct: 27 EALPSLAGDPVAVEALLRAVFGVVVDEAIQKGTSVSQKVC-EWKEPEELKQLLDLELRSQ 85
Query: 69 PESMETILQDVQEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISSP 128
ES + IL+ + I V P +F S G +++ N + + +P
Sbjct: 86 GESQKQILERCRAVIRYSVKTG-HPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAP 144
Query: 129 AATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI---G 185
+E V+ L ++ +G G+ + + + AR + G
Sbjct: 145 VFVLMEEEVLRKLRALVGWS-------SGDGIFCPGGSISNMYAVNLARYQRYPDCKQRG 197
Query: 186 RENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVE 245
+ L ++ S + H ++QK A +G+ + R +K + P+ L QI +
Sbjct: 198 LRTLPPLALFTSKECHYSIQKGAAFLGLGTDSVRVVKAD--ERGKMVPEDLERQIGMAEA 255
Query: 246 AGLVPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGV 305
G VP + AT GTT + A DPL+ + DV ++ G+W+HVDAA+ GS + +H +DG+
Sbjct: 256 EGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGI 315
Query: 306 EGADSFSLNAHKWFFTTLDCCCLWVKDPS-ALVSSLSTNPEYLKNKATESKQVVDYKDWQ 364
+ ADS + N HK L C L ++D S L + YL + +D D
Sbjct: 316 QRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKV 375
Query: 365 ITLSRRFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKR---VSP---SAVM 418
+ RR LKLWL+ + G L + +A+ + + V V
Sbjct: 376 VQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVC 435
Query: 419 DKLKPKYENCHSQQLVTEEEAINEFNRELLESINASGKAYMTHAVCGG-IYAMRFAVGAT 477
P Q+ E +++ L E + G + + G R V +
Sbjct: 436 FWFVPPSLR-GKQESPDYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANS 494
Query: 478 LTEERHVMVAWTMVQE 493
+ ++
Sbjct: 495 ALTCADMDFLLNELER 510
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 551 bits (1421), Expect = 0.0
Identities = 101/492 (20%), Positives = 191/492 (38%), Gaps = 43/492 (8%)
Query: 18 NPLDPEEFRRQAHMVIDFIADYYKNVDKYPVRSQVEPGYLRKRLPEC-APYNPESMETIL 76
L EF + ++ V+ S ++P L + +++++
Sbjct: 27 GELGSAEFASVMSHTTSAMKSVFEQVNA--PYSGMDPKALEDAINAVDLDNKNAPLKSVI 84
Query: 77 QDVQEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISSPAATELENI 136
DV E + Q P+ A+ + + E + + N +W + +AT +E
Sbjct: 85 DDVAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQASSATYVEQK 144
Query: 137 VMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENI------- 189
V++WL L + G+ ++ L ARD + +K+ +I
Sbjct: 145 VVNWLCDKYDLSEK------ADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPD 198
Query: 190 --SKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAG 247
KL + S ++H +QK+A +G+ K + + + L I G
Sbjct: 199 YADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDAN--ADGTMDITKLDEVIAQAKAEG 256
Query: 248 LVPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVEG 307
L+P + T GTT A+D L + D+A + +W+HVD AY G A I + + GVE
Sbjct: 257 LIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGG-ALILSSHKSRLKGVER 315
Query: 308 ADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQITL 367
A S S++ HK F+ T+ C L V D S L + +YL + E + + D I
Sbjct: 316 AHSISVDFHKLFYQTISCGALLVNDKSNF-KFLLHHADYLNREHDE---LPNLVDKSIAT 371
Query: 368 SRRFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKR---VSP---SAVMDKL 421
++RF +LK+++ ++N G L + ++ ++ + ++ S V+ +
Sbjct: 372 TKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFELLAEPSLSTVLFRA 431
Query: 422 KPKYENCHSQQLVTEEEAINEFNRELLESINASGKAYMTHAVCGGIYAMRFAVGATLTEE 481
E ++E N+ L G A + + G A++F +
Sbjct: 432 TH------------ETADLDELNKALRLEALTRGIAVLGETIVDGKTALKFTILNPCLTT 479
Query: 482 RHVMVAWTMVQE 493
+ +
Sbjct: 480 SDFESLLSKINM 491
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 143 bits (361), Expect = 2e-37
Identities = 77/493 (15%), Positives = 137/493 (27%), Gaps = 68/493 (13%)
Query: 25 FRRQAHMVIDFIADYYKNVDKYPVRSQVEPGYLRKRLPECAPYNPESMETILQDVQEHIV 84
+ Q D D+ ++ + RLP IL ++
Sbjct: 36 IQSQPPARRDPTMDWLASLRSQIKPYRDRFPS-HARLPR----AGLPRAEILAEIAAMGA 90
Query: 85 PGVTHWQSPNYFAY-FPSSGSIAGFLGEMLSSGFNVVGFNWISSPAATELENIVMDWLGQ 143
W+ + FL E+ + + P+ + E V+
Sbjct: 91 AESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPSTAKFEAEVVAMTAH 150
Query: 144 MLKLPKSFLFSGNGGGVI-QGTTCEAILCTLTAARDRVLNKIGRENISKLVVYGSDQTHC 202
ML + G G + G T E++L + RD + I+ H
Sbjct: 151 MLGGDAA---GGTVCGTVTSGGT-ESLLLAMKTYRDW---ARATKGITAPEAVVPVSAHA 203
Query: 203 ALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLVPLFLCATIGTTAI 262
A KAAQ GI L Y ++ I + + + +
Sbjct: 204 AFDKAAQYFGIKL---VRTPLDAD--YRADVAAMREAITPN------TVVVAGSAPGYPH 252
Query: 263 TAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPE-----FQHFIDGVEGADSFSLNAHK 317
VDP+ + +A + GI HVDA G E F +EG S S + HK
Sbjct: 253 GVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHK 312
Query: 318 WFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQITLSRR-FRSLKL 376
+ + + + P L ++ Y SR S
Sbjct: 313 YGYGAKGTSVILYRRPDLLHYQYFIAADWPGG---------LYFSPTFAGSRPGALSATA 363
Query: 377 WLVIRNYGVANLRHFLRSHVNMAKLFERLVAS-----------------DKRVSPSAVMD 419
W + + G R + A + V + ++ VM+
Sbjct: 364 WAAMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDPLWVIAVASDELNIYQVME 423
Query: 420 KLK------PKYENCHSQQLV-----TEEEAINEFNRELLESINASGKAYMTHAVCGGIY 468
++ + + TE ++ F +L +++ +Y
Sbjct: 424 EMAGRGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAHPEKATGMAPVY 483
Query: 469 AMRFAVGATLTEE 481
M A L +
Sbjct: 484 GMAAAAPPELVRQ 496
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 140 bits (353), Expect = 1e-36
Identities = 52/396 (13%), Positives = 120/396 (30%), Gaps = 67/396 (16%)
Query: 22 PEEFRRQAHMVIDFIADYYKNVDKYPVRSQVEPGYLRKRLPECAPYNPESMETILQDVQE 81
P+ ++ +V++ ++V + +++PE N E I ++
Sbjct: 31 PKNMEKRGELVLNEYLKEIEDVFNH------------RKIPE----NGIDDEKIKLFLKF 74
Query: 82 HIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFN--VVGFNWIS-----SPAATELE 134
+ P + E LSSGF + + + A+ +
Sbjct: 75 LSMMDTDKD--PKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMY 132
Query: 135 NIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLVV 194
+ L K +T +I L+AAR + + VV
Sbjct: 133 ALTNKILESFFKQLGLN----VHAIATPISTGMSISLCLSAARKKYGSN---------VV 179
Query: 195 YGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLVPLFLC 254
+H + KA VG++++ + + + + I ++E G P +
Sbjct: 180 IYPYASHKSPIKAVSFVGMNMRLVETVLDGDR--VYVPVEDIENAIKKEIELGNRPC-VL 236
Query: 255 ATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGV--EGADSFS 312
+T+ D + + + + + I ++ AY A + + D+
Sbjct: 237 STLTFFPPRNSDDIVEIAKICENYDIPHIINGAY---AIQNNYYLEKLKKAFKYRVDAVV 293
Query: 313 LNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFR 372
++ K T + ++ D + + S
Sbjct: 294 SSSDKNLLTPIGGGLVYSTDAEFIKEI--------------------SLSYPGRASAT-P 332
Query: 373 SLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVAS 408
+ + + + G N +++ N KL + L+
Sbjct: 333 VVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND 368
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 139 bits (352), Expect = 3e-36
Identities = 60/363 (16%), Positives = 120/363 (33%), Gaps = 48/363 (13%)
Query: 58 RKRLPECAPYNPESMETILQDVQE-HIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSG 116
+LP N + +++++ + + + T W+ G L +
Sbjct: 35 FPQLPS----NGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTIAYEK 90
Query: 117 FNVVGFNWI---SSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTL 173
+ V N + PA ++E+ V+ + +M P G G T E++L
Sbjct: 91 YCVA--NQLHPDVFPAVRKMESEVVSMVLRMFNAPSD----TGCGTTTSGGT-ESLLLAC 143
Query: 174 TAARDRVLNKIGRENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSP 233
+A+ L+ G I++ + H KAA G+ L R ++ ++ Y +
Sbjct: 144 LSAKMYALHHRG---ITEPEIIAPVTAHAGFDKAAYYFGMKL---RHVELDPTT-YQVDL 196
Query: 234 DSLLTQINLDVEAGLVPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAG--- 290
+ IN + + L + D ++ L +A+++ + +HVD+
Sbjct: 197 GKVKKFINKN------TVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIV 250
Query: 291 ---SACICPEFQHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYL 347
V G S S + HK+ F + ++ + NP +
Sbjct: 251 SFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWT 310
Query: 348 KNKATESKQVVDYKDWQITL--SRR-FRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFER 404
TL SR + W + N G + V A F++
Sbjct: 311 G-----------GLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKK 359
Query: 405 LVA 407
+
Sbjct: 360 YIQ 362
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 120 bits (303), Expect = 4e-30
Identities = 58/365 (15%), Positives = 122/365 (33%), Gaps = 53/365 (14%)
Query: 59 KRLPECAPYNPESMETILQDVQEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFN 118
+ + E S + IL++++++ ++ N F S+ + +++
Sbjct: 3 RNMQE----KGVSEKEILEELKKYRS-LDLKYEDGNIFGSMCSN--VLPITRKIVDIFLE 55
Query: 119 VVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARD 178
+ LE + LG +L ++ +GG T EA L L ++
Sbjct: 56 TNLGDPGLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGG------T-EANLMALRCIKN 108
Query: 179 RVLNK--IGRENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSL 236
K G + H + +K +++ ++ + Y + +
Sbjct: 109 IWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMMDLEY---IYAPIKED--YTIDEKFV 163
Query: 237 LTQINLDVEAGLVPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAG------ 290
+ G++ GTT + +D ++ L +AK+ I++HVDAA+ G
Sbjct: 164 KDAVEDYDVDGII-----GIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFL 218
Query: 291 -----SACICPEFQHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPE 345
+ +F D G DS +++ HK + + KD L +
Sbjct: 219 DDKYKKKGVNYKF----DFSLGVDSITIDPHKMGHCPIPSGGILFKDIG-YKRYLDVDAP 273
Query: 346 YLKNKATESKQVVDYKDWQITLSR-RFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFER 404
YL + I +R F + V+R G R + + +
Sbjct: 274 YLTETRQAT----------ILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYK 323
Query: 405 LVASD 409
+ +
Sbjct: 324 KLKEN 328
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase,
pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis
thaliana}
Length = 502
Score = 114 bits (285), Expect = 2e-27
Identities = 56/363 (15%), Positives = 123/363 (33%), Gaps = 43/363 (11%)
Query: 58 RKRLPECAPYNPESMETILQDVQEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGF 117
R ++PE N E Q + + ++ + F + +++ S
Sbjct: 29 RFKMPE----NSIPKEAAYQIINDELMLDGNPRLNLASFVTTW----MEPECDKLIMSSI 80
Query: 118 NVVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAAR 177
N + P TEL+N ++ + + P + G G + + EAI+ A +
Sbjct: 81 NKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSS--EAIMLAGLAFK 138
Query: 178 DRVLNKIGRE--NISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDS 235
+ NK E + K + +K A+ ++L + +K ++ Y + P
Sbjct: 139 RKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVEL---KEVKLSEGY-YVMDPQQ 194
Query: 236 LLTQINLDVEAGLVPLFLCATIGTTAITAVDPLKPLCDVAKQFG------IWVHVDAAYA 289
+ ++ + + + A +G+T + +K L D+ + +HVDAA
Sbjct: 195 AVDMVDEN------TICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASG 248
Query: 290 GSACICPEFQHFID-GVEGADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLK 348
G + D + S +++ HK+ + ++ L L + YL
Sbjct: 249 GFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLG 308
Query: 349 NKATESKQVVDYKDWQITL--SRR-FRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERL 405
TL S+ + + + + G R+ + + +
Sbjct: 309 -----------ADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREG 357
Query: 406 VAS 408
+
Sbjct: 358 LEK 360
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 93.5 bits (232), Expect = 1e-20
Identities = 55/333 (16%), Positives = 104/333 (31%), Gaps = 48/333 (14%)
Query: 128 PAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNK---I 184
P + ++ ++ + + P G I + EA + A + R +
Sbjct: 77 PQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSS--EACMLGGMAMKWRWRKRMEAA 134
Query: 185 GRENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDV 244
G+ +V G K A+ ++L R I + P ++ + +
Sbjct: 135 GKPTDKPNLVCGP--VQICWHKFARYWDVEL---REIPMRPGQ-LFMDPKRMIEACDEN- 187
Query: 245 EAGLVPLFLCATIGTTAITAVDPLKPLCDVAKQF------GIWVHVDAAYAGSACICPEF 298
+ + T G T + +PL D +F I +H+DAA G
Sbjct: 188 -----TIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAP 242
Query: 299 QHFID-GVEGADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQV 357
D + S S + HK+ L C + +D AL L N +YL
Sbjct: 243 DIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLG--------- 293
Query: 358 VDYKDWQITL--SRR-FRSLKLWLVIRNYG----------VANLRHFLRSHVNMAKLFER 404
+ + SR + + + G + +L + +E
Sbjct: 294 --GQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEF 351
Query: 405 LVASDKRVSPSAVMDKLKPKYENCHSQQLVTEE 437
+ AV KLK + ++ ++E
Sbjct: 352 ICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSER 384
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 8e-09
Identities = 85/497 (17%), Positives = 140/497 (28%), Gaps = 171/497 (34%)
Query: 101 SSGSI---------AGFLGEMLSSGFNVVGFNWISSPAATELENIVMDWLGQMLKLPKSF 151
S GS+ + F+ L FN P TE D +L F
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNK------ILPEPTE-GFAADDEPTTPAELVGKF 64
Query: 152 LFSGNGGGVI--------QGTTCEAILCTLTAARDRVLNKIGRENISKLVVYGSDQTHCA 203
L G + G + + LT + L +I L +
Sbjct: 65 L------GYVSSLVEPSKVGQFDQVLNLCLTEFENCYL---EGNDIHALAAKLLQENDTT 115
Query: 204 LQKAAQIVGIDLKN-FRAIKTTKSSSYGLSPDSLLTQINLDVEAGLVPLF---------- 252
L K ++ +KN A K S +L + + A LV +F
Sbjct: 116 LVKTKEL----IKNYITARIMAKRPFDKKSNSALFRAVG-EGNAQLVAIFGGQGNTDDYF 170
Query: 253 -----LCAT----IGTTAITAVDPLKPLC----DVAKQF--GI----WVHV-----DAAY 288
L T +G + + L L D K F G+ W+ D Y
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 289 AGSACI-CPEFQHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYL 347
S I CP I G AH + T L P L S L
Sbjct: 231 LLSIPISCP----LI----GVIQL---AH--YVVT---AKLLGFTPGELRSYLKG----- 269
Query: 348 KNKATESKQVV------DYKDWQ--ITLSRRFRSLKLWLVIRNYGVANLRHFLRSHVNMA 399
S+ +V + W+ R+ ++ ++ G +R +
Sbjct: 270 --ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI-----G-------VRCY---- 311
Query: 400 KLFERLVASDKRVSPSAVMDKLK-----PKY----ENCHSQQLVTEEEAINEFNRELLES 450
+ + PS + D L+ P N +Q+ ++ +N+ N L
Sbjct: 312 -----EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV---QDYVNKTNSHLPAG 363
Query: 451 -------INASGKAYMTHAVCGG----IYAMRFAVGATLTEERHVMVAWTMVQEQLEA-- 497
+N + + V G +Y + + R + Q ++
Sbjct: 364 KQVEISLVNGA-----KNLVVSGPPQSLYGLNLTL-------RKAKAPSGLDQSRIPFSE 411
Query: 498 --------FLTTNTPFN 506
FL +PF+
Sbjct: 412 RKLKFSNRFLPVASPFH 428
Score = 38.5 bits (89), Expect = 0.005
Identities = 65/369 (17%), Positives = 107/369 (28%), Gaps = 173/369 (46%)
Query: 126 SSPAATEL----ENIVMDWLG-QMLKL----PKS--FLFSGNGGGVIQGTTCEAILCTLT 174
+S AA ++ +N D G +L + P + F G G I
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI------------- 1684
Query: 175 AARDRVLNKIGRENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGL-SP 233
REN S ++ + + + K F+ I S+SY S
Sbjct: 1685 -----------RENYSAMI-FETIVDGKLKTE---------KIFKEI-NEHSTSYTFRSE 1722
Query: 234 DSLL-----TQINLDVEAGLVPLFLCATIGTTAITAVDPLKPLCDVA-----KQFGIWVH 283
LL TQ P A+T ++ A K G+ +
Sbjct: 1723 KGLLSATQFTQ----------P----------ALTLME-------KAAFEDLKSKGL-IP 1754
Query: 284 VDAAYAGSACICPEFQHFIDGVEGADSFSL--NAHKWFFTTLDCCCLWVKDPSALVSSLS 341
DA +AG H SL +AL S
Sbjct: 1755 ADATFAG---------H-----------SLGEY-------------------AALASL-- 1773
Query: 342 TNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWLVIRNYG----VANLR-HFLRSHV 396
A V+ + +++ + R G VA R RS+
Sbjct: 1774 ---------A----DVMSIES----------LVEV-VFYR--GMTMQVAVPRDELGRSNY 1807
Query: 397 NMAKLF-ERLVASDKRVSPSAVMDKLKPK---------YENCHSQQLVT--EEEAINEFN 444
M + R+ AS + + V++++ + Y N +QQ V + A++
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY-NVENQQYVAAGDLRALDTVT 1866
Query: 445 RELLESINA 453
+L I
Sbjct: 1867 -NVLNFIKL 1874
Score = 33.5 bits (76), Expect = 0.22
Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 35/135 (25%)
Query: 58 RK-----R-LPECAPYN----PESMETILQDVQEHIVP-GVTHWQSPNYFAY-----FPS 101
RK R LP +P++ + + I +D+ ++ V Q P Y +
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVL 471
Query: 102 SGSIAGFLGEMLSSGFNVVGFNWISSPAATELE--NIV------MDWLGQMLKLPKSFLF 153
SGSI+ + + + V W T+ + +I+ LG + K
Sbjct: 472 SGSISERIVDCIIRL-PV---KW---ETTTQFKATHILDFGPGGASGLGVLTHRNK---- 520
Query: 154 SGNGGGVIQGTTCEA 168
G G VI T +
Sbjct: 521 DGTGVRVIVAGTLDI 535
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 1e-07
Identities = 80/524 (15%), Positives = 140/524 (26%), Gaps = 179/524 (34%)
Query: 4 LTSDQLDGNSGLVINPLDPEEFRR--------QAHMVIDFI-----ADY------YKNVD 44
L+ +++D ++++ R Q MV F+ +Y K
Sbjct: 46 LSKEEIDH---IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 45 KYPVRSQVEPGYLRKRL----PECAPYN---PESMETI---LQDVQEHIVPGVT-HWQSP 93
+ P R RL A YN + + L +++ V
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA--KNVLID---- 156
Query: 94 NYFAYFPSSGSIAGFLG------EMLSS-------GFNVVGFNWISSPAATELENIVMDW 140
G + G G ++ S F + F W++ E +
Sbjct: 157 ---------G-VLGS-GKTWVALDVCLSYKVQCKMDFKI--F-WLNLKNCNSPETV---- 198
Query: 141 LGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLVVYGSDQT 200
L + KL I T+ D N R + +
Sbjct: 199 LEMLQKL------------------LYQIDPNWTSRSDHSSNIKLRIHSIQAE------- 233
Query: 201 HCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDV-EAGLVPLFL--CATI 257
L+ KS Y + LL + L+V A F C +
Sbjct: 234 --------------LRRL-----LKSKPY---ENCLL--VLLNVQNAKAWNAFNLSCKIL 269
Query: 258 GTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVEGADSFSLNAHK 317
TT V D A + H + + SL K
Sbjct: 270 LTTRFKQV------------------TDFLSAATTTH-ISLDHHSMTLTPDEVKSLLL-K 309
Query: 318 WFFTTLDCCCLWVKDPSAL-VSSLSTNP-------EYLKNKATESKQVVDYKDWQI--TL 367
+ LDC P L L+TNP E +++ ++ +
Sbjct: 310 Y----LDC------RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 368 SRRFRSLKLWLVIRNYGVANLRHFLRSHVN-MAKLFERLVASDKRVSPSAVMDKL----- 421
L+ + + L F + L + + V++KL
Sbjct: 360 ESSLNVLEPAEYRKMF--DRLSVF-PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 422 ---KPKYENC--HSQQLVTEEEAINEF--NRELLESINASGKAY 458
+PK S L + + NE+ +R +++ N K +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP-KTF 459
Score = 39.1 bits (90), Expect = 0.003
Identities = 64/514 (12%), Positives = 144/514 (28%), Gaps = 165/514 (32%)
Query: 11 GNSGLVINPLDPEEFRRQ---------------AHMVIDFIADYYKNVDK---------- 45
G + + ++ + + + V++ + +D
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 46 -YPVRSQVEPGYLRKRLPECAPYNPESMETILQDVQEHIVPGVTHWQSPNYFAYF----- 99
+R LR RL + PY + +L +V + + F
Sbjct: 222 NIKLRIHSIQAELR-RLLKSKPY-ENCL-LVLLNV----------Q-NAKAWNAFNLSCK 267
Query: 100 ----PSSGSIAGFLGEMLSSGFNVVGFNWISSPAATELENIVMDWLGQ-MLKLPKSFLFS 154
+ FL ++ ++ + +P E++++++ +L LP+
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLPR----- 320
Query: 155 GNGGGVIQGTTCEAILCTLTAARDRVLNKIGR-ENISKLVVYGSDQTHCALQKA-AQIVG 212
+ T ++ A R + + +N D+ ++ + +
Sbjct: 321 -------EVLTTNPRRLSIIAESIR--DGLATWDNWKH---VNCDKLTTIIESSLNVLEP 368
Query: 213 IDLKN-FRAIKTTKSSSYGLSPDSLLTQINLDVEAGLVPLFLCATIGTTAITAVDPLKPL 271
+ + F + + P + + L+ L I + + V+ L
Sbjct: 369 AEYRKMFDRL--------SVFPP------SAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 272 CDVAKQ---FGIWVH--------------------VDAAYAGSACICPE----------- 297
V KQ I + VD Y +
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYF 473
Query: 298 FQHF---IDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATES 354
+ H + +E + +L F + +L + E
Sbjct: 474 YSHIGHHLKNIEHPERMTL------FRMV----------------------FLDFRFLEQ 505
Query: 355 KQVVDYKDWQITLSRRFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKRVSP 414
K D W + S L ++ Y + + +ERLV + P
Sbjct: 506 KIRHDSTAWNASGS----ILNTLQQLKFYK----PYICDND----PKYERLVNAILDFLP 553
Query: 415 SAVMDKLKPKYENCHSQQLVTEEEAI-NEFNREL 447
+ + KY + L+ E+EAI E ++++
Sbjct: 554 KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 31.0 bits (69), Expect = 1.1
Identities = 32/191 (16%), Positives = 56/191 (29%), Gaps = 46/191 (24%)
Query: 4 LTSDQLDGNSGLVINPLDPEEFRRQAHMVIDFIAD----------YYKNVDKYPVRSQVE 53
+ D+L +N L+P E+R+ + F + +V K V V
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 54 PGYLRKRLPECAPYNP---------ESMETILQDVQEH--IVPGVTHWQSP-----NYFA 97
+ L E P E + + H I V H+ P +
Sbjct: 410 -KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI---VDHYNIPKTFDSDDLI 465
Query: 98 YFPSSGSIAGFLG------EM--LSSGFNVV--GFNWIS-----SPAATELENIVMDWLG 142
+G E + F +V F ++ A +++ L
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 143 QMLKLPKSFLF 153
Q LK K ++
Sbjct: 526 Q-LKFYKPYIC 535
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 45.0 bits (106), Expect = 4e-05
Identities = 31/210 (14%), Positives = 64/210 (30%), Gaps = 29/210 (13%)
Query: 133 LENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKL 192
+ N ++ + ++ + V+ T ++ R + +K
Sbjct: 99 ITNSLVLNVIKLAGVHSV-----ASCFVVPMATGMSLTLCFLTLR-------HKRPKAKY 146
Query: 193 VVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGL---- 248
+++ + K+ G + + L D L T + VEA +
Sbjct: 147 IIW-PRIDQKSCFKSMVTAGFEPVVIENV---------LEGDELRTDLK-AVEAKIQELG 195
Query: 249 --VPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVE 306
L L +T A D L+ L + + I V+ AY + C V
Sbjct: 196 PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 255
Query: 307 GADSFSLNAHKWFFTTLDCCCLWVKDPSAL 336
D+F + K F + + + +
Sbjct: 256 RIDAFVQSLDKNFMVPVGGAIIAGFNEPFI 285
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 44.7 bits (105), Expect = 6e-05
Identities = 32/211 (15%), Positives = 66/211 (31%), Gaps = 29/211 (13%)
Query: 132 ELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISK 191
++ N ++ + ++ + V+ T ++ R + +K
Sbjct: 116 KITNSLVLDIIKLAGVHTV-----ANCFVVPMATGMSLTLCFLTLRHKRPK-------AK 163
Query: 192 LVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLV-- 249
+++ + K+ G + + L D L T + VEA +
Sbjct: 164 YIIW-PRIDQKSCFKSMITAGFEPVVIENV---------LEGDELRTDLK-AVEAKVQEL 212
Query: 250 -PLFLCATIGTT---AITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGV 305
P + TT A D L+ L + + I V+ AY + C V
Sbjct: 213 GPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARV 272
Query: 306 EGADSFSLNAHKWFFTTLDCCCLWVKDPSAL 336
D+F + K F + + + S +
Sbjct: 273 GRIDAFVQSLDKNFMVPVGGAIIAGFNDSFI 303
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 41.3 bits (96), Expect = 6e-04
Identities = 34/208 (16%), Positives = 63/208 (30%), Gaps = 33/208 (15%)
Query: 127 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAIL-CTLTAARDRVLNKIG 185
S +L++ + +P QG E IL L + +
Sbjct: 75 SRNYYDLKDKAKELFNYDYIIP-----------AHQGRGAENILFPVLLKYKQKEGKAKN 123
Query: 186 RENISKLVVYGSDQTHCALQKA-AQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDV 244
IS + D T ++ + + I + +T L I
Sbjct: 124 PVFIS---NFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHG 180
Query: 245 EAGLVPLFLCATIGTTAITAVDP--LKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFI 302
+V + T + V LK + ++AKQ GI+V +D+A +
Sbjct: 181 ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYF--IKARD 238
Query: 303 DGVEG-------------ADSFSLNAHK 317
+ AD+ +++A K
Sbjct: 239 PKYKNATIKEVIFDMYKYADALTMSAKK 266
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 39.7 bits (93), Expect = 0.002
Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 21/131 (16%)
Query: 210 IVGIDLKNF--RAIKTTKSSSYGLSPDSLLTQINLDVEAGLVPLFLCATI----GTTAIT 263
V + + T Y ++P++ I + G V L L G
Sbjct: 107 YVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGN---- 162
Query: 264 AVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHF-IDGVE-GADSFSLNAHKWFFT 321
+ +K + V ++ + + V+ AYA + E GAD + HK
Sbjct: 163 -LPDVKKIAKVCSEYDVPLLVNGAYA--------IGRMPVSLKEIGADFIVGSGHKSMAA 213
Query: 322 TLDCCCLWVKD 332
+ + +K+
Sbjct: 214 SGPIGVMGMKE 224
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 36.0 bits (84), Expect = 0.027
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 17/67 (25%)
Query: 256 TIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHF-IDGVE--GADSFS 312
T+G V L+ + + G V VD + A + +D + AD +
Sbjct: 177 TLGG-----VTDLRAMTKLVHDVGALVVVDHSAAAP--------YRLLD-IRETDADVVT 222
Query: 313 LNAHKWF 319
+NAH W
Sbjct: 223 VNAHAWG 229
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 33.1 bits (75), Expect = 0.20
Identities = 26/166 (15%), Positives = 51/166 (30%), Gaps = 18/166 (10%)
Query: 127 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILC-TLTAARDRVLNKIG 185
S + L V + G +P QG E I L R++
Sbjct: 73 SRSYYALAESVKNIFGYQYTIP-----------THQGRGAEQIYIPVLIKKREQEKGLDR 121
Query: 186 RENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVE 245
+ ++ + + + + +K + L I +V
Sbjct: 122 SKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIE-EVG 180
Query: 246 AGLVPLF----LCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAA 287
VP + G ++ + LK + +AK++ I V +D+A
Sbjct: 181 PNNVPYIVATITSNSAGGQPVS-LANLKAMYSIAKKYDIPVVMDSA 225
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 32.6 bits (74), Expect = 0.32
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 398 MAKLFERLVASDKRVSPSAVMDKLKPKYENCHSQQLVTEEEAINEFNRELLESI----NA 453
+ ++F L SDK V + + + Q + E R LL+++
Sbjct: 222 LQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQH------DVQELCRVLLDNVENKMKG 275
Query: 454 SGKAYMTHAVCGGIY 468
+ + G
Sbjct: 276 TCVEGTIPKLFRGKM 290
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 32.2 bits (74), Expect = 0.39
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 267 PLKPLCDVAKQFGIWVHVDAAYA 289
PL L +++K+FG + VD +++
Sbjct: 204 PLAELVNISKEFGCALLVDESHS 226
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 31.8 bits (73), Expect = 0.51
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 267 PLKPLCDVAKQFGIWVHVDAAYA 289
LK +CD+A ++ V VD ++A
Sbjct: 193 DLKSICDLADKYNALVMVDDSHA 215
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 31.8 bits (73), Expect = 0.54
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 267 PLKPLCDVAKQFGIWVHVDAAYA 289
LK +CD+A ++ V VD ++A
Sbjct: 195 NLKGVCDLADKYDALVMVDDSHA 217
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 31.5 bits (72), Expect = 0.57
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 268 LKPLCDVAKQFGIWVHVDAAYAGSACICPEFQH-FIDGVEGADSFSL 313
L+ + K+ G+++ +D A SA P D D F +
Sbjct: 166 LEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYI 212
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination,
hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9
PDB: 1nbf_A
Length = 353
Score = 31.4 bits (71), Expect = 0.64
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 398 MAKLFERLVASDKRVSPSAVMDKLKPKYENCHSQQLVTEEEAINEFNRELLESI 451
+ ++F L SDK V + + + Q + E R LL+++
Sbjct: 53 LQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQH------DVQELCRVLLDNV 100
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas
paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A*
2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Length = 427
Score = 31.4 bits (72), Expect = 0.65
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 267 PLKPLCDVAKQFGIWVHVDAAYA 289
PLK + VAK+ G V VD A++
Sbjct: 212 PLKEMVAVAKKHGAMVLVDEAHS 234
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 31.4 bits (72), Expect = 0.70
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 267 PLKPLCDVAKQFGIWVHVDAAYA 289
P+K +CD+A++FG ++D +A
Sbjct: 196 PIKEICDIAEEFGALTYIDEVHA 218
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 31.0 bits (71), Expect = 0.78
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 255 ATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQ-HFIDGVEGADSFSL 313
AT + T +D ++ + DV K + +H+D + +A + + G D+ S
Sbjct: 150 ATEVGSIYT-LDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSF 208
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 31.0 bits (71), Expect = 0.81
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 267 PLKPLCDVAKQFGIWVHVDAAYA 289
L L +A +F V VD A++
Sbjct: 191 NLPELTSIANEFDAAVMVDDAHS 213
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 31.0 bits (71), Expect = 1.0
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 267 PLKPLCDVAKQFGIWVHVDAAYA 289
PL + V +Q W+ VD A+
Sbjct: 186 PLAEIQQVTQQHNGWLMVDDAHG 208
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A
{Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Length = 499
Score = 30.9 bits (70), Expect = 1.0
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 10 DGNSGLVINPLDPEEFRRQAHMVIDFIAD 38
G G++++P DPE+ A ++
Sbjct: 399 GGKYGVLVDPEDPEDI---ARGLLKAFES 424
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 30.9 bits (69), Expect = 1.1
Identities = 31/210 (14%), Positives = 59/210 (28%), Gaps = 39/210 (18%)
Query: 124 WISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNK 183
+ S LE V + G +P QG E +L ++ K
Sbjct: 71 YAGSENFYHLERTVQELFGFKHIVP-----------THQGRGAENLLS-------QLAIK 112
Query: 184 IGRENISKLVVYGSDQTHCALQKA-AQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINL 242
G+ T +K A V I + + L I+
Sbjct: 113 PGQYVAG---NMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLID- 168
Query: 243 DVEAGLVPLFL----CATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAA-YAGSACICPE 297
+ A + G ++ + ++ + ++ + GI V DA +A E
Sbjct: 169 EKGAENIAYICLAVTVNLAGGQPVS-MANMRAVRELTEAHGIKVFYDATRCVENAYFIKE 227
Query: 298 FQHFIDGV----------EGADSFSLNAHK 317
+ + AD +++ K
Sbjct: 228 QEQGFENKSIAEIVHEMFSYADGCTMSGKK 257
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
5' phosphat external aldimine, chloroplast, pyridox
phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
3eia_A*
Length = 432
Score = 30.3 bits (69), Expect = 1.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 259 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 289
T A + L L + AK+ G + D+AYA
Sbjct: 211 TGAAATREQLTQLVEFAKKNGSIIVYDSAYA 241
>2d0t_A Indoleamine 2,3-dioxygenase; helix bundle, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: HEM PIM NHE; 2.30A {Homo
sapiens} SCOP: a.266.1.2 PDB: 2d0u_A*
Length = 406
Score = 30.2 bits (67), Expect = 1.8
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 15 LVINPLDPEEFRRQAHMVIDFIADYYKNVDKYPVRSQVEPGYLRKRLPECAPY 67
L I+ L + +R A +V+ I Y + +V P + + +
Sbjct: 68 LSIDHLTDHKSQRLARLVLGCITMAYVWGKGHGDVRKVLPRNIAVPYCQLSKK 120
>2ekg_A Proline dehydrogenase/delta-1-pyrroline-5-carboxy dehydrogenase;
flavoenzyme, prodh, beta-alpha-barrel inhibitor,
inactivation, flavocyanine; HET: LYX FAD; 1.90A {Thermus
thermophilus} PDB: 2g37_A*
Length = 327
Score = 29.6 bits (67), Expect = 2.2
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 264 AVDPLKPLCDVAKQFGIWVHVDA 286
A+ L+ + A+ G++V +D
Sbjct: 132 ALALLREVLREAEPRGVFVRLDM 154
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural
genomics, PSI-2, protein structure initiative, northeast
structural genomics consortium; 3.10A {Homo sapiens}
Length = 107
Score = 28.0 bits (62), Expect = 3.0
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 386 ANLRHFLRSHVNMAKLFERLVASDKRVSPSAVMDKLKPKYENCHSQQLVTEEEAINEFNR 445
L HF+ + +L R+ V V+DKL + + + V E R
Sbjct: 16 PQLLHFVDQY--REQLIARV----TSVEV--VLDKLHGQVLSQEQYERVLAENTRPSQMR 67
Query: 446 ELLESINASGKA 457
+L + +
Sbjct: 68 KLFSLSQSWDRK 79
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
3asb_A*
Length = 400
Score = 29.5 bits (67), Expect = 3.1
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 259 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 289
T + D L+ + A + I + DAAY+
Sbjct: 176 TGTVLNKDQLRAIVHYAIEHEILILFDAAYS 206
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
{Chlamydomonas reinhardtii}
Length = 449
Score = 29.2 bits (66), Expect = 3.9
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 259 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 289
T A L L + A++ G + DAAYA
Sbjct: 222 TGAAATRAQLTELVNFARKNGSILVYDAAYA 252
>3eoq_A Putative zinc protease; two similar domains of
beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure,
hydrolase; 2.29A {Thermus thermophilus}
Length = 406
Score = 29.0 bits (66), Expect = 4.1
Identities = 13/95 (13%), Positives = 24/95 (25%), Gaps = 23/95 (24%)
Query: 23 EEFRRQAHMVIDFIADYYK----------NVDKYPVRSQVE-------PGYLRKRLPECA 65
R+ + + Y VD + ++ E G + P
Sbjct: 163 TALTREG--MAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLT 220
Query: 66 PYNPESMETILQDVQEHI---VPGVTHWQSPNYFA 97
P + ++ PGV +Q F
Sbjct: 221 PAFGVEERPYEKARALYLVALFPGV-AYQEEARFP 254
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston
bacterial structural genomics initiative, BSGI,
transferase; HET: PLP; 2.05A {Escherichia coli} PDB:
3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Length = 423
Score = 29.0 bits (66), Expect = 4.2
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 15/63 (23%)
Query: 257 IGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVE--GADSFSLN 314
IG V + + ++ + GI HVDA + P ID + D S +
Sbjct: 176 IGV-----VQDIAAIGEMCRARGIIYHVDATQS--VGKLP-----ID-LSQLKVDLMSFS 222
Query: 315 AHK 317
HK
Sbjct: 223 GHK 225
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent
enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A
{Thermus thermophilus}
Length = 376
Score = 28.7 bits (65), Expect = 4.3
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 259 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 289
T A+ + +A++ G+W+ D Y
Sbjct: 171 TGAVADWGYFEEALGLARKHGLWLIHDNPYV 201
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase
enzyme family, structural genomics, JOIN for structural
genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Length = 333
Score = 28.5 bits (64), Expect = 5.4
Identities = 9/66 (13%), Positives = 19/66 (28%), Gaps = 14/66 (21%)
Query: 370 RFRSLKLWLVIRNYGVANLRHF-----LRSHVNMAKLFERLVASDKRVSPSAVMDKLKPK 424
R ++ +L Y N R ++RL + + +MD +
Sbjct: 5 REDEIRDFLATHGYADWNRTPLAGDASSRR-------YQRLRSPTGA--KAVLMDWSPEE 55
Query: 425 YENCHS 430
+
Sbjct: 56 GGDTQP 61
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
aeruginosa}
Length = 412
Score = 28.7 bits (65), Expect = 5.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 259 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 289
T +D + + +AKQ+ + V D AYA
Sbjct: 185 TAQCVELDFFERVVALAKQYDVMVVHDLAYA 215
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M
1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I*
1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K*
1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Length = 145
Score = 27.2 bits (61), Expect = 6.9
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 5/44 (11%)
Query: 182 NKIGRENISKLVVY-GSDQTHCALQKAAQIVGIDLKNFRAIKTT 224
+ GRE + VY G+ + G L IK
Sbjct: 91 KQRGREAFESVRVYLGNPYDE----DGEVLDGTSLDRLSNIKFV 130
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
{Staphylococcus aureus}
Length = 404
Score = 28.3 bits (64), Expect = 7.3
Identities = 5/31 (16%), Positives = 8/31 (25%)
Query: 259 TTAITAVDPLKPLCDVAKQFGIWVHVDAAYA 289
T + + K + D AY
Sbjct: 194 TGSTATKEVFDEAIAKFKGTDTKIVHDFAYG 224
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative
epimerase, PSI-biolog YORK structural genomics research
consortium; HET: MSE TAR; 1.90A {Francisella
philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A
3r1z_A*
Length = 379
Score = 28.0 bits (63), Expect = 7.9
Identities = 2/28 (7%), Positives = 10/28 (35%), Gaps = 3/28 (10%)
Query: 63 ECAP---YNPESMETILQDVQEHIVPGV 87
++++ + ++E P +
Sbjct: 49 VAPATTAITGDTLQGMQYIIREIFAPVI 76
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.409
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,836,872
Number of extensions: 475211
Number of successful extensions: 1198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1126
Number of HSP's successfully gapped: 60
Length of query: 506
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 408
Effective length of database: 3,965,535
Effective search space: 1617938280
Effective search space used: 1617938280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)