RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 048643
(506 letters)
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 476
Score = 383 bits (985), Expect = e-130
Identities = 192/493 (38%), Positives = 281/493 (56%), Gaps = 31/493 (6%)
Query: 20 LDPEEFRRQAHMVIDFIADYYKNVDKYPVRSQVEPGYLRKRLPECAPYNPESMETILQDV 79
++ +FRR+ ++D++ADY + ++ V V+PGYLR +P AP P++ E ILQDV
Sbjct: 1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60
Query: 80 QEHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISSPAATELENIVMD 139
++ I+PGVTHW SP +FAYFP++ S L +ML +GF+W +SPA TELE ++MD
Sbjct: 61 EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWAASPACTELETVMMD 120
Query: 140 WLGQMLKLPKSFLFSGNG--GGVIQGTTCEAILCTLTAARDRVLNKIGREN--------I 189
WLG+ML+LP++FL G GGVIQG+ EA L L AAR +V+ ++ + +
Sbjct: 121 WLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVL 180
Query: 190 SKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLV 249
KLV Y SDQ H ++++A I G+ LK + + +L + D AGL+
Sbjct: 181 EKLVAYASDQAHSSVERAGLIGGVKLKAIP-----SDGKFAMRASALQEALERDKAAGLI 235
Query: 250 PLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVEGAD 309
P F+ AT+GTT+ + D L + + + IW+HVDAAYAGSA ICPEF+H ++GVE AD
Sbjct: 236 PFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFAD 295
Query: 310 SFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQITLSR 369
SF+ N HKW DC +WVK + L + +P YLK+ S + DY+ WQ+ L R
Sbjct: 296 SFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGR 355
Query: 370 RFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKRVSPSAVMDKLKPKYENCH 429
RFRSLK+W V R YGV L+ ++R HV ++ FE V D P++E C
Sbjct: 356 RFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD-------------PRFEVCA 402
Query: 430 SQQLVT---EEEAINEFNRELLESINASGKAYMTHAVCGGIYAMRFAVGATLTEERHVMV 486
L + + N LLE IN++ K ++ G + +RFA+ + E HV +
Sbjct: 403 EVTLGLVCFRLKGSDGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRL 462
Query: 487 AWTMVQEQLEAFL 499
AW ++ L
Sbjct: 463 AWEHIRGLAAELL 475
>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB
{Escherichia coli [TaxId: 562]}
Length = 450
Score = 155 bits (393), Expect = 9e-43
Identities = 61/466 (13%), Positives = 123/466 (26%), Gaps = 55/466 (11%)
Query: 32 VIDFIADYYKNVDKYPVRSQVEPGYLRKRLPECAPYNPESMETILQDVQEHIVPGVTHWQ 91
V D ++ + + KR P + I+ D E + G
Sbjct: 4 VTDLRSELLDSRFGAKS---ISTIAESKRFPL-HEMRDDVAFQIIND--ELYLDGNARQN 57
Query: 92 SPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISSPAATELENIVMDWLGQMLKLPKSF 151
+ + + +++ N + P + ++ ++ + + P
Sbjct: 58 LATFCQTWDDE-----NVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAP- 111
Query: 152 LFSGNGGGVIQGTTCEAILCTLTAARDRVLNKI-GRENISKLVVYGSDQTHCALQKAAQI 210
+G G + EA + A + R ++ + K A+
Sbjct: 112 -KNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARY 170
Query: 211 VGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLVPLFLCATIGTTAITAVDPLKP 270
++L+ + P ++ + + + + T +
Sbjct: 171 WDVELREIPMRPGQ----LFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALD 226
Query: 271 LCDVAKQFGIWVHVDAAYAGS-ACICPEFQHFIDGVEGADSFSLNAHKWFFTTLDCCCLW 329
I +H+DAA G A + + S S + HK+ L C +
Sbjct: 227 KFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVI 286
Query: 330 VKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWLVIRNY------ 383
+D AL L N +YL + I SR +
Sbjct: 287 WRDEEALPQELVFNVDYLG---------GQIGTFAINFSRPAGQVIAQYYEFLRLGREGY 337
Query: 384 -----GVANLRHFLRSHVNMAKLFERLVASDKRVSPSAVMDKLKPKYENCHSQQLVTEEE 438
+ +L + +E + AV KLK E+
Sbjct: 338 TKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDG-----------EDP 386
Query: 439 AINEFNRELLESINASGK---AYMTHAVCGGIYAMRFAVGATLTEE 481
+ +L E + G A+ I MR +
Sbjct: 387 GYTLY--DLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMD 430
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 117 bits (293), Expect = 3e-29
Identities = 55/483 (11%), Positives = 141/483 (29%), Gaps = 70/483 (14%)
Query: 22 PEEFRRQAHMVIDFIADYYKNVDKYPV--RSQVEPGYLRKRLPECAPYNPESMETILQDV 79
P+ ++ +V++ ++V + + ++ ++ L + + + ++
Sbjct: 11 PKNMEKRGELVLNEYLKEIEDVFNHRKIPENGIDDEKIKLFLKFLSMMDTDKDPKSVRIG 70
Query: 80 Q---EHIVPGVTHWQSPNYFAYFPSSGSIAGFLGEMLSSGFNVVGFNWISSPAATELENI 136
+ S S G L + + L N
Sbjct: 71 EREARTYSKIHEELSSGFCHGIGRS-----GNLVDPQPKASG--------ASIMYALTNK 117
Query: 137 VMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGRENISKLVVYG 196
+++ + L L + + G +I L+AAR + VV
Sbjct: 118 ILESFFKQLGLNVHAIATPISTG-------MSISLCLSAARKK---------YGSNVVIY 161
Query: 197 SDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEAGLVPLFLCAT 256
+H + KA VG++++ + + + + I ++E G P + +T
Sbjct: 162 PYASHKSPIKAVSFVGMNMRLVETVLDGDR--VYVPVEDIENAIKKEIELGNRP-CVLST 218
Query: 257 IGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVEGADSFSLNAH 316
+ D + + + + + I ++ AYA E D+ ++
Sbjct: 219 LTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKA-FKYRVDAVVSSSD 277
Query: 317 KWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQITLSRRFRSLKL 376
K T + ++ D + + P + +
Sbjct: 278 KNLLTPIGGGLVYSTDAEFIKEISLSYPGR---------------------ASATPVVNT 316
Query: 377 WLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKRVSPSAVMDKLKPKYENCHSQQLVTE 436
+ + + G N +++ N KL + L+ +S L + + ++
Sbjct: 317 LVSLLSMGSKNYLELVKNQKNSKKLLDELL---NDLSKKTGGKFLDVESPIASCISVNSD 373
Query: 437 EEAINEFNRELLESINASGKAYMTHAVCGGIYAMRFAVGATLTEERHVMVAWTMVQEQLE 496
I L ++ +G + G + + + A + E +
Sbjct: 374 PVEIAAK----LYNLRVTGPRGIKKTDHFGNCYLGTYTHDYIV----MNAAIGVRTEDIV 425
Query: 497 AFL 499
+
Sbjct: 426 NSV 428
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 103 bits (257), Expect = 2e-24
Identities = 40/379 (10%), Positives = 98/379 (25%), Gaps = 44/379 (11%)
Query: 127 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGR 186
S ++ N ++ + ++ + V+ T ++ R +
Sbjct: 89 SSLLNKITNSLVLNVIKLAGVHSV-----ASCFVVPMATGMSLTLCFLTLRHK------- 136
Query: 187 ENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEA 246
+ + K+ G + + ++ +I
Sbjct: 137 -RPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRT--DLKAVEAKIQELGPE 193
Query: 247 GLVPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFQHFIDGVE 306
++ L +T A D L+ L + + I V+ AY + C V
Sbjct: 194 HIL--CLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 251
Query: 307 GADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQIT 366
D+F + K F + + + + P
Sbjct: 252 RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGR-------------------- 291
Query: 367 LSRRFRSLKLWLVIRNYGVANLRHFLRSHVNMAKLFERLVASDKRVSPSAVMDKLKPKYE 426
+ SL + + + + G + R L+ M + ++
Sbjct: 292 -ASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNPIS 350
Query: 427 NCHSQQLVTEE--EAINEFNRELLESINASGKAY--MTHAVCGGIYAMRFAVGATLTEER 482
+ + + +A+ + L + +A G F A
Sbjct: 351 LAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCA 410
Query: 483 HVMVA--WTMVQEQLEAFL 499
++ A M + ++ F+
Sbjct: 411 YLNAAAAIGMKMQDVDLFI 429
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 44.1 bits (103), Expect = 3e-05
Identities = 30/223 (13%), Positives = 63/223 (28%), Gaps = 25/223 (11%)
Query: 127 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAI-LCTLTAARDRVLNKIG 185
S + L V + G +P QG E I + L R++
Sbjct: 73 SRSYYALAESVKNIFGYQYTIP-----------THQGRGAEQIYIPVLIKKREQEKGLDR 121
Query: 186 RENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVE 245
+ ++ + + + + +K + L I
Sbjct: 122 SKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP 181
Query: 246 AGLVPLFLCATIGTTAITAVDP--LKPLCDVAKQFGIWVHVDAAYAGSACI-----CPEF 298
+ + T + V LK + +AK++ I V +D+A E+
Sbjct: 182 NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEY 241
Query: 299 QHF------IDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSA 335
+ + + + AD +++A K + D
Sbjct: 242 KDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFF 284
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 40.9 bits (95), Expect = 3e-04
Identities = 30/219 (13%), Positives = 61/219 (27%), Gaps = 33/219 (15%)
Query: 127 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGR 186
S LE V + G K + QG E +L ++ K G+
Sbjct: 74 SENFYHLEKTVKELFGF-----KHIVP------THQGRGAENLLS-------QLAIKPGQ 115
Query: 187 ENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEA 246
+ + + A V I + + L T I
Sbjct: 116 YVAGNMYFTTT--RFHQEKNGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAE 173
Query: 247 --GLVPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAA-YAGSACICPEFQHFID 303
+ L + + ++ ++ + ++A +GI + DA +A E + +
Sbjct: 174 NIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYE 233
Query: 304 GV----------EGADSFSLNAHKWFFTTLDCCCLWVKD 332
V AD +++ K + +
Sbjct: 234 NVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDE 272
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 34.9 bits (79), Expect = 0.020
Identities = 30/208 (14%), Positives = 55/208 (26%), Gaps = 19/208 (9%)
Query: 127 SPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAILCTLTAARDRVLNKIGR 186
S +L++ + QG E IL + + K
Sbjct: 74 SRNYYDLKDKAKELFN----YDYIIPAH-------QGRGAENILFPVLLKYKQKEGKAKN 122
Query: 187 ENISKLVVYGSDQTHCALQKAAQIVGIDLKNFRAIKTTKSSSYGLSPDSLLTQINLDVEA 246
+ + H L + I + +T L I
Sbjct: 123 PVFISNFHFDTTAAHVELNGCK-AINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGAD 181
Query: 247 GLVPLFLCATIGTTAITAVDP--LKPLCDVAKQFGIWVHVDAAYAGSACI-----CPEFQ 299
+V + T + V LK + ++AKQ GI+V +D+A P+++
Sbjct: 182 NIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYK 241
Query: 300 HFIDGVEGADSFSLNAHKWFFTTLDCCC 327
+ D + D
Sbjct: 242 NATIKEVIFDMYKYADALTMSAKKDPLL 269
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 236
Score = 34.3 bits (78), Expect = 0.022
Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 18/147 (12%)
Query: 231 LSPDSLLTQINLDVEAGLVPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAG 290
LSP+ L+ + L+ E P + + + T + L +A + + + + A
Sbjct: 2 LSPEQLVLTL-LEAE----PPNVLVSRPSMPFTEASMMMSLTKLADKELVHM-IGWA--- 52
Query: 291 SACICPEFQHFIDGVEGADSFSLNAHKWF-FTTLDCCCLWVKDPSALVSSLSTNPEYLKN 349
P F D L W + + P L+ + + ++
Sbjct: 53 --KKIPGFVELSL----LDQVRLLESCWMEVLMVGLMWRSIDHPGKLI--FAPDLVLDRD 104
Query: 350 KATESKQVVDYKDWQITLSRRFRSLKL 376
+ + +++ D + + RFR LKL
Sbjct: 105 EGKCVEGILEIFDMLLATTSRFRELKL 131
>d2hxja1 a.136.1.1 (A:3-118) Hypothetical protein NMB1681 {Neisseria
meningitidis [TaxId: 487]}
Length = 116
Score = 30.6 bits (69), Expect = 0.13
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 18/103 (17%)
Query: 343 NPEYLKNKATESKQVVDYKDWQITLSRRFRSLKLWLV------IRNYGVANLRHFLRSHV 396
+ +K +++ + D+ + + +RF+ L L + + Y A + L +H
Sbjct: 11 SAVQTMSKKKQTEMIADHIYGKYDVFKRFKPLALGIDQDLIAALPQYDAALIARVLANHC 70
Query: 397 NMAKLFERLVASDKRVSPSAVMDKLKPKYENCHSQQLVTEEEA 439
+ + L KR N + VT EE
Sbjct: 71 RRPRYLKALARGGKRFDL------------NNRFKGEVTPEEQ 101
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 31.0 bits (69), Expect = 0.33
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 3/81 (3%)
Query: 221 IKTTKSSSYGLSPDSLLTQINLDVEAGLVPLFLCATIGTTAITAVDPLKPLCDVAKQFGI 280
+ T + + L+ D L + A ++ T A+ L+ + D + +
Sbjct: 137 VPTYEEDEFRLNVDELKKYVTDKTRALIINSPCNPT---GAVLTKKDLEEIADFVVEHDL 193
Query: 281 WVHVDAAYAGSACICPEFQHF 301
V D Y
Sbjct: 194 IVISDEVYEHFIYDDARHYSI 214
>d1xpca_ a.123.1.1 (A:) Estrogen receptor alpha {Human (Homo
sapiens) [TaxId: 9606]}
Length = 245
Score = 29.3 bits (65), Expect = 0.84
Identities = 30/187 (16%), Positives = 59/187 (31%), Gaps = 28/187 (14%)
Query: 230 GLSPDSLLTQINLDVEAGLVPLFLCA-TIGTTAITAVDPLKPLCDVA-KQFGIWVHVDAA 287
L+ D +++ + LD E P L + T + + L ++A ++ ++
Sbjct: 3 SLTADQMVSAL-LDAE----PPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINW--- 54
Query: 288 YAGSACICPEFQHFIDGVEGADSFSLNAHKWFFTTLDCCCLWVKDPSALVSSLSTNPEYL 347
A P F D L W + +W + N
Sbjct: 55 ----AKRVPGFVDLTL----HDQVHLLECAWLEILM-IGLVWRSMEHPGKLLFAPNLLLD 105
Query: 348 KNKATESKQVVDYKDWQITLSRRFRSLKL---------WLVIRNYGVANLRHFLRSHVNM 398
+N+ + +V+ D + S RFR + L +++ N GV +
Sbjct: 106 RNQGKCVEGMVEIFDMLLATSSRFRMMNLQGEEFVCLKSIILLNSGVYTFLSSTLKSLEE 165
Query: 399 AKLFERL 405
R+
Sbjct: 166 KDHIHRV 172
>d2p1ta1 a.123.1.1 (A:229-458) Retinoid-X receptor alpha (RXR-alpha)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 230
Score = 27.7 bits (61), Expect = 2.7
Identities = 21/130 (16%), Positives = 38/130 (29%), Gaps = 15/130 (11%)
Query: 249 VPLFLCATIGTTAITAVDPLKPLCDVA-KQFGIWVHVDAAYAGSACICPEFQHFIDGVEG 307
++ A +G + DP+ +C A KQ V A P F
Sbjct: 18 TETYVEANMGLNPSSPNDPVTNICQAADKQLFTLVEW-------AKRIPHFSELPL---- 66
Query: 308 ADSFSLNAHKWF-FTTLDCCCLWVKDPSALVSSLSTNPEYLKNKATESKQVVDYKDWQIT 366
D L W + ++ L+T +N A + +
Sbjct: 67 DDQVILLRAGWNELLIASFSHRSIAVKDGIL--LATGLHVHRNSAHSAGVGAIFDRVLTE 124
Query: 367 LSRRFRSLKL 376
L + R +++
Sbjct: 125 LVSKMRDMQM 134
>d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal
domain {Moorella thermoacetica [TaxId: 1525]}
Length = 149
Score = 26.3 bits (57), Expect = 5.3
Identities = 12/59 (20%), Positives = 21/59 (35%)
Query: 112 MLSSGFNVVGFNWISSPAATELENIVMDWLGQMLKLPKSFLFSGNGGGVIQGTTCEAIL 170
+L + +VG I++ + ++ D +G K F G G E L
Sbjct: 51 ILDARAVLVGSPTINNDILPVVSPLLDDLVGLRPKNKVGLAFGAYGWGGGAQKILEERL 109
>d1z45a1 b.30.5.4 (A:358-699) Galactose mutarotase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 27.1 bits (59), Expect = 5.6
Identities = 7/29 (24%), Positives = 10/29 (34%)
Query: 277 QFGIWVHVDAAYAGSACICPEFQHFIDGV 305
QF + A Y E +ID +
Sbjct: 288 QFYTGDFLSAGYEARQGFAIEPGRYIDAI 316
>d1okta1 a.45.1.1 (A:86-211) Pf GST {Malarial parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 126
Score = 25.7 bits (56), Expect = 7.6
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 21 DPEEFRRQAHMVIDFIADYYKNVDKYPVRSQVEPGYLRKRLPECAPYNPESMETILQDVQ 80
A M+ + D + + + Q E +L + LP+ + Y E +L+
Sbjct: 4 SELN-EFYADMIFCGVQDIHYKFNNTNLFKQNETTFLNEDLPKWSGY----FEKLLKKNH 58
Query: 81 EHIVPGVTHW 90
+ ++
Sbjct: 59 TNNNNDKYYF 68
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.409
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,916,486
Number of extensions: 89425
Number of successful extensions: 279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 16
Length of query: 506
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 417
Effective length of database: 1,185,626
Effective search space: 494406042
Effective search space used: 494406042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.7 bits)