BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048648
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/142 (45%), Positives = 87/142 (61%), Gaps = 18/142 (12%)
Query: 58 MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
MRD KRLQQ P P D++IML NA+I G T +DGG FKL+L+F+++YP KPP
Sbjct: 10 MRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPT 69
Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
V FVS MFH N D+ +W+ YDV AI +IQ +L DPN S AN +AA M
Sbjct: 70 VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARM 129
Query: 160 LTGGRIDYYKKAQRIVELSWKA 181
+ + +Y ++ + +VE SW A
Sbjct: 130 YSESKREYNRRVRDVVEQSWTA 151
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 115 bits (288), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 82/140 (58%), Gaps = 18/140 (12%)
Query: 58 MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
MRD K+LQ+ P P +D+I+ AII G T F+ G FKL+L+FT+EYP KPP
Sbjct: 13 MRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPT 72
Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
V F+S MFH N D+ +W+ YDV AI +IQ +L +PN S AN AA +
Sbjct: 73 VKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQL 132
Query: 160 LTGGRIDYYKKAQRIVELSW 179
R +Y K+ Q+IVE SW
Sbjct: 133 YQENRREYEKRVQQIVEQSW 152
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 82/140 (58%), Gaps = 18/140 (12%)
Query: 58 MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
MRD K+LQ+ P P +D+I+ AII G T F+ G FKL+L+FT+EYP KPP
Sbjct: 10 MRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPT 69
Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
V F+S MFH N D+ +W+ YDV AI +IQ +L +PN S AN AA +
Sbjct: 70 VKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQL 129
Query: 160 LTGGRIDYYKKAQRIVELSW 179
R +Y K+ Q+IVE SW
Sbjct: 130 YQENRREYEKRVQQIVEQSW 149
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 114 bits (285), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 82/140 (58%), Gaps = 18/140 (12%)
Query: 58 MRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
MRD KRLQ+ P P +++IM NA+I G GT F+ G FKL ++F++EYP KPP
Sbjct: 10 MRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPT 69
Query: 112 VPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
V F+S MFH N D+ +W+ YDV +I +IQ +L +PN S AN QAA +
Sbjct: 70 VRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQL 129
Query: 160 LTGGRIDYYKKAQRIVELSW 179
+ +Y K+ IVE SW
Sbjct: 130 YQENKREYEKRVSAIVEQSW 149
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 84/144 (58%), Gaps = 18/144 (12%)
Query: 55 QQWMRDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVK 108
++ MRD KR+++ APPG D++M+ NA+I+G T ++ G F+L L+F +EYP K
Sbjct: 7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 66
Query: 109 PPVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQA 156
PP V F+S MFH N D+ +W YDV +I +IQ + DPN S AN +A
Sbjct: 67 PPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEA 126
Query: 157 ATMLTGGRIDYYKKAQRIVELSWK 180
AT+ + Y K+ + VE SW+
Sbjct: 127 ATLFKDHKSQYVKRVKETVEKSWE 150
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 62/124 (50%), Gaps = 19/124 (15%)
Query: 53 QLQQWMRDLKRLQQGAP-----PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPV 107
+LQQ +R L L G P P D++ A + G T+++ +KLTL+F +YP
Sbjct: 13 RLQQELRTL--LMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPY 70
Query: 108 KPPVVPFVSGMFHRN------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQ 155
KPPVV F + +H N W + YDV I ++Q +LG+PN S N Q
Sbjct: 71 KPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQ 130
Query: 156 AATM 159
AA M
Sbjct: 131 AADM 134
>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme
Length = 169
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 15/109 (13%)
Query: 68 APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFH------- 120
A P +D+M I GL +++ G +F+LT+ FT EY PPVV F++ FH
Sbjct: 45 AKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHT 104
Query: 121 --------RNDLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLT 161
N KWN++Y + +I +Q+ML +P L + N +AA +L
Sbjct: 105 GQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILV 153
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 18/141 (12%)
Query: 50 LKCQLQQWMRDLKRLQQGAP----PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEY 105
L+ + +QW RD P G D+M I G T ++GG++KLT+ F +EY
Sbjct: 15 LQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEY 74
Query: 106 PVKPPVVPFVSGMFHRN--------------DLKWNSDYDVVAIFATIQLMLGDPNLYSA 151
P +PP F +FH N + W + I IQ +L DPN+ S
Sbjct: 75 PTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASP 134
Query: 152 ANQQAATMLTGGRIDYYKKAQ 172
A +A TM +++Y K+ +
Sbjct: 135 AQTEAYTMFKKDKVEYEKRVR 155
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 25/132 (18%)
Query: 72 DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN--------- 122
D+DI +++G TL++GG FK L F ++YP KPP + F+S ++H N
Sbjct: 30 DNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCI 89
Query: 123 -------DLKWNSD---------YDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRID 166
D KW + + V I ++ ML DPN S AN AA M +
Sbjct: 90 SILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAE 149
Query: 167 YYKKAQRIVELS 178
+ KK + V S
Sbjct: 150 FKKKVAQCVRRS 161
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 69 PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
P G ++M I G GT ++GG+FKL + F +YP PP F +FH N
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
D W + I IQ +L +PN+ S A +A T+ R++Y K+ +
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 63.2 bits (152), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Query: 69 PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
P G ++M I G GT ++GG+FKL + F +YP PP F +FH N
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
D W + I IQ +L +PN+ + A +A T+ R++Y K+ +
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQAPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 69 PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
P G ++M I G GT ++GG+FKL + F +YP PP F +FH N
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 94
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
D W + I IQ +L +PN+ A +A T+ R++Y K+ +
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 69 PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
P G ++M I G GT ++GG+FKL + F +YP PP F +FH N
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVAPSGT 94
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
D W + I IQ +L +PN+ A +A T+ R++Y K+ +
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 69 PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
P G ++M I G GT ++GG+FKL + F +YP PP F +FH N
Sbjct: 33 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 92
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
D W + I IQ +L +PN+ A +A T+ R++Y K+ +
Sbjct: 93 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 150
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 69 PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
P G ++M I G GT ++GG+FKL + F +YP PP F +FH N
Sbjct: 34 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
D W + I IQ +L +PN+ A +A T+ R++Y K+ +
Sbjct: 94 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 69 PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
P G ++M I G GT ++GG+FKL + F +YP PP F +FH N
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
D W + I IQ +L +PN+ A +A T+ R++Y K+ +
Sbjct: 92 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 69 PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
P G ++M I G GT ++GG+FKL + F +YP PP F +FH N
Sbjct: 34 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 93
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
D W + I IQ +L +PN+ A +A T+ R++Y K+ +
Sbjct: 94 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 151
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 69 PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
P G ++M I G GT ++GG+FKL + F +YP PP F +FH N
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
D W + I IQ +L +PN+ A +A T+ R++Y K+ +
Sbjct: 92 VSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 69 PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
P G ++M I G GT ++GG+FKL + F +YP PP F +FH N
Sbjct: 37 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 96
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
D W + I IQ +L +PN+ A +A T+ R++Y K+ +
Sbjct: 97 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 154
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 69 PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------ 122
P G ++M I G GT ++GG+FKL + F +YP PP F +FH N
Sbjct: 32 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT 91
Query: 123 --------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
D W + I IQ +L +PN+ A +A T+ R++Y K+ +
Sbjct: 92 VXLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYXQNRVEYEKRVR 149
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 69 PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFH-------- 120
P G ++M I G GT ++GG+FKL + F +YP PP F +FH
Sbjct: 35 PDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVYPSGT 94
Query: 121 ------RNDLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
D W + I IQ +L +PN+ A +A T+ R++Y K+ +
Sbjct: 95 VCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 152
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 32/157 (20%)
Query: 54 LQQWMRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYP 106
L++ M + K+L P G +++ A+I+G T F+ G+F L F +YP
Sbjct: 9 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 68
Query: 107 VKPPVVPFVSGMFHRN-------------------------DLKWNSDYDVVAIFATIQL 141
+ PP + F MFH N +W+ V I ++
Sbjct: 69 LSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVS 128
Query: 142 MLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELS 178
ML +PN S AN A+ M R +YK A++IV+ S
Sbjct: 129 MLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 165
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 32/157 (20%)
Query: 54 LQQWMRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYP 106
L++ M + K+L P G +++ A+I+G T F+ G+F L F +YP
Sbjct: 5 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 64
Query: 107 VKPPVVPFVSGMFHRN-------------------------DLKWNSDYDVVAIFATIQL 141
+ PP + F MFH N +W+ V I ++
Sbjct: 65 LSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVS 124
Query: 142 MLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELS 178
ML +PN S AN A+ M R +YK A++IV+ S
Sbjct: 125 MLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 161
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 32/157 (20%)
Query: 54 LQQWMRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYP 106
L++ M + K+L P G +++ A+I+G T F+ G+F L F +YP
Sbjct: 8 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 67
Query: 107 VKPPVVPFVSGMFHRN-------------------------DLKWNSDYDVVAIFATIQL 141
+ PP + F MFH N +W+ V I ++
Sbjct: 68 LSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVS 127
Query: 142 MLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELS 178
ML +PN S AN A+ M R +YK A++IV+ S
Sbjct: 128 MLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 164
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 32/157 (20%)
Query: 54 LQQWMRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYP 106
L++ M + K+L P G +++ A+I+G T F+ G+F L F +YP
Sbjct: 11 LKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYP 70
Query: 107 VKPPVVPFVSGMFHRN-------------------------DLKWNSDYDVVAIFATIQL 141
+ PP + F MFH N +W+ V I ++
Sbjct: 71 LSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVS 130
Query: 142 MLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELS 178
ML +PN S AN A+ M R +YK A++IV+ S
Sbjct: 131 MLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 167
>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
pdb|1I7K|B Chain B, Crystal Structure Of Human Mitotic-Specific Ubiquitin-
Conjugating Enzyme, Ubch10
Length = 179
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 25/123 (20%)
Query: 62 KRLQQ-------------GAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVK 108
KRLQQ A P D++ I G GT+++ +KL+L+F YP
Sbjct: 33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYN 92
Query: 109 PPVVPFVSGMFHRN------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQA 156
P V F++ +H N KW++ YDV I +IQ +LG+PN+ S N A
Sbjct: 93 APTVKFLTPCYHPNVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHA 152
Query: 157 ATM 159
A +
Sbjct: 153 AEL 155
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 70 PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------- 122
P ++D+ I G GT + GG+F++ L K++P PP F++ +FH N
Sbjct: 37 PNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEI 96
Query: 123 -----DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVEL 177
W ++ + + TI+ +L PN SA N++A +L +Y +A+ + E+
Sbjct: 97 CVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEI 156
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 25/124 (20%)
Query: 72 DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN--------- 122
D+D+ +I+G TL++GG+FK L F K+YP++PP + F++ ++H N
Sbjct: 44 DNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCI 103
Query: 123 ----------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRID 166
+ +W + V I ++ ML DPN S AN AA R
Sbjct: 104 SILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNG 163
Query: 167 YYKK 170
+K+
Sbjct: 164 EFKR 167
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 69/154 (44%), Gaps = 32/154 (20%)
Query: 51 KCQLQQWMRDLKRLQQGAPPG-------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTK 103
K ++ +++L++L + +PPG +++I + + +I G T + G+F L+F K
Sbjct: 3 KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPK 62
Query: 104 EYPVKPPVVPFVSGMFHRN-------------------------DLKWNSDYDVVAIFAT 138
+YP+ PP + F + H N + +W+ V I +
Sbjct: 63 DYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLS 122
Query: 139 IQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQ 172
+ ML +PN+ S AN A + R ++ ++ +
Sbjct: 123 VMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 15/110 (13%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++Q+ ++DL+R Q A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 10 RIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKP 69
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPN 147
P V F + ++H N D+ +W+ V + +I +L DPN
Sbjct: 70 PKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPN 119
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 71 GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN-------- 122
G D+ A I G GT + GG++ +T+++ EYP KPP V F +G +H N
Sbjct: 34 GSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTIC 93
Query: 123 ------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKK 170
D W + I +Q +L PN S A + A + + +Y KK
Sbjct: 94 LSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKK 147
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 14/114 (12%)
Query: 71 GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN-------- 122
G D+ A I G GT + GG++ +T+++ EYP KPP V F +G +H N
Sbjct: 36 GSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTIC 95
Query: 123 ------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKK 170
D W + I +Q +L PN S A + A + + +Y KK
Sbjct: 96 LSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKK 149
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 17/143 (11%)
Query: 46 VGGGLKCQLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFT 102
+G LK ++ + + DL R Q A P DD+ A I+G + + GG+F LT+ F
Sbjct: 1 LGSALK-RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFP 59
Query: 103 KEYPVKPPVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYS 150
+YP KPP V F + ++H N D+ +W+ + + +I +L DPN
Sbjct: 60 TDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 119
Query: 151 AANQQAATMLTGGRIDYYKKAQR 173
+ A + R D Y + R
Sbjct: 120 PLVPEIARIYKTDR-DKYNRISR 141
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 50 LKCQLQQWMRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTK 103
L+ L++ ++L LQ+ P P DD+ A I+G + + GG+F LT+ F
Sbjct: 5 LEMALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPT 64
Query: 104 EYPVKPPVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPN 147
+YP KPP + F + ++H N D+ +W+ V + +I +L DPN
Sbjct: 65 DYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPN 120
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 15/136 (11%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++Q+ ++DL R Q A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 8 RIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKP 67
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
P V F + ++H N D+ +W+ + + +I +L DPN + A
Sbjct: 68 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 127
Query: 158 TMLTGGRIDYYKKAQR 173
+ R Y + A+
Sbjct: 128 RIYKTDRERYNQLARE 143
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++ + + DL R Q A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
P V F + ++H N D+ +W+ + + +I +L DPN + A
Sbjct: 67 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 158 TMLTGGRIDYYKKAQR 173
+ R Y + A+
Sbjct: 127 RIYKTDREKYNRIARE 142
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 15/110 (13%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++Q+ + DL+R A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 7 RIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKP 66
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPN 147
P + F + ++H N D+ +W+ V + +I +L DPN
Sbjct: 67 PKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPN 116
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++ + + DL R Q A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 5 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
P V F + ++H N D+ +W+ + + +I +L DPN + A
Sbjct: 65 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 124
Query: 158 TMLTGGRIDYYKKAQR 173
+ R Y + A+
Sbjct: 125 RIYKTDREKYNRIARE 140
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++ + + DL R Q A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 4 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 63
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
P V F + ++H N D+ +W+ + + +I +L DPN + A
Sbjct: 64 PKVAFTTRIYHPNINSNGSISLDILRSQWSPALKISKVLLSICSLLCDPNPDDPLVPEIA 123
Query: 158 TMLTGGRIDYYKKAQR 173
+ R Y + A+
Sbjct: 124 RIYKTDREKYNRIARE 139
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++ + + DL R Q A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
P V F + ++H N D+ +W+ + + +I +L DPN + A
Sbjct: 67 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 158 TMLTGGRIDYYKKAQR 173
+ R Y + A+
Sbjct: 127 RIYKTDREKYNRIARE 142
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++ + + DL R Q A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 10 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 69
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
P V F + ++H N D+ +W+ + + +I +L DPN + A
Sbjct: 70 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 129
Query: 158 TMLTGGRIDYYKKAQR 173
+ R Y + A+
Sbjct: 130 RIYKTDREKYNRIARE 145
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++ + + DL R Q A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 15 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 74
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
P V F + ++H N D+ +W+ + + +I +L DPN + A
Sbjct: 75 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 134
Query: 158 TMLTGGRIDYYKKAQR 173
+ R Y + A+
Sbjct: 135 RIYQTDREKYNRIARE 150
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++ + + DL R Q A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 8 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 67
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
P V F + ++H N D+ +W+ + + +I +L DPN + A
Sbjct: 68 PKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 127
Query: 158 TMLTGGRIDYYKKAQR 173
+ R Y + A+
Sbjct: 128 RIYKTDREKYNRIARE 143
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 15/110 (13%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++Q+ + DL+R A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 23 RIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKP 82
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPN 147
P + F + ++H N D+ +W+ V + +I +L DPN
Sbjct: 83 PKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPN 132
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 18/119 (15%)
Query: 47 GGGLKCQLQQWMRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLK 100
G L++ ++L LQ+ P P DD+ A I+G + + GG+F LT+
Sbjct: 2 AGSGSMALKRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVH 61
Query: 101 FTKEYPVKPPVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPN 147
F +YP KPP + F + ++H N D+ +W+ V + +I +L DPN
Sbjct: 62 FPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDILRSQWSPALTVSKVLLSICSLLCDPN 120
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++ + + DL R Q A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 23 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 82
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
P V F + ++H N D+ +W+ + + +I +L DPN + A
Sbjct: 83 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 142
Query: 158 TMLTGGRIDYYKKAQR 173
+ R Y + A+
Sbjct: 143 RIYKTDREKYNRIARE 158
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++ + + DL R Q A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 110 PVVPFVSGMFHRN------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
P V F + ++H N +W+ + + +I +L DPN + A
Sbjct: 67 PKVAFTTRIYHPNINSNGSICLDALRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 158 TMLTGGRIDYYKKAQR 173
+ R Y + A+
Sbjct: 127 RIYKTDREKYNRIARE 142
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 15/136 (11%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++ + + DL R Q A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 23 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 82
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
P V F + ++H N D+ +W+ + + +I +L DPN + A
Sbjct: 83 PKVAFTTRIYHPNINSNGSIXLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 142
Query: 158 TMLTGGRIDYYKKAQR 173
+ R Y + A+
Sbjct: 143 RIYKTDREKYNRIARE 158
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++ + + DL R Q A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 4 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 63
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
P V F + ++H N D+ +W+ + + +I +L DPN + A
Sbjct: 64 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 123
Query: 158 TMLTGGRIDYYKKAQR 173
+ R D Y + R
Sbjct: 124 RIYKTDR-DKYNRISR 138
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++ + + DL R Q A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 15 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 74
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
P V F + ++H N D+ +W+ + + +I +L DPN + A
Sbjct: 75 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 134
Query: 158 TMLTGGRIDYYKKAQR 173
+ R D Y + R
Sbjct: 135 RIYKTDR-DKYNRISR 149
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 15/110 (13%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++ + + DL R Q A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPN 147
P V F + ++H N D+ +W+ + + +I +L DPN
Sbjct: 67 PKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPN 116
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++ + + DL R Q A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 5 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
P V F + ++H N D+ +W+ + + +I +L DPN + A
Sbjct: 65 PKVAFTTRIYHPNINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 124
Query: 158 TMLTGGRIDYYKKAQR 173
+ R D Y + R
Sbjct: 125 RIYKTDR-DKYNRISR 139
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++ + + DL R Q A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
P V F + ++H N D+ +W + + +I +L DPN + A
Sbjct: 67 PKVAFTTRIYHPNINSNGSICLDILRSQWGPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 158 TMLTGGRIDYYKKAQR 173
+ R Y + A+
Sbjct: 127 RIYKTDREKYNRIARE 142
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++ + + DL R Q A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 13 RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 72
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
P V F + ++H N D+ +W+ + + +I +L DPN + A
Sbjct: 73 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 132
Query: 158 TMLTGGRIDYYKKAQR 173
+ R D Y + R
Sbjct: 133 RIYKTDR-DKYNRISR 147
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 54 LQQWMRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPV 107
+++ ++L+ +QQ P P DDI A I G + + GG+F L + F +YP
Sbjct: 6 MRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPF 65
Query: 108 KPPVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQ 155
K P V F++ ++H N D+ +W+ + + +I +L DPN + +
Sbjct: 66 KAPRVTFMTKVYHPNINKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPE 125
Query: 156 AATMLTGGRIDYYKKAQR 173
A +L + + A+
Sbjct: 126 VANVLRANKKQFEDTARE 143
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++ + + DL R Q A P DD+ A +G + + GG+F LT+ F +YP KP
Sbjct: 7 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
P V F + ++H N D+ +W+ + + +I +L DPN + A
Sbjct: 67 PKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 126
Query: 158 TMLTGGRIDYYKKAQR 173
+ R Y + A+
Sbjct: 127 RIYKTDREKYNRIARE 142
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 48 GGLKCQLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKE 104
G LK ++ + + DL + A P DD+ A I+G + + GG+F L + F +
Sbjct: 21 GALK-RINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSD 79
Query: 105 YPVKPPVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAA 152
YP KPP V F + ++H N D+ +W+ + + +I +L DPN
Sbjct: 80 YPFKPPKVNFTTKIYHPNINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPL 139
Query: 153 NQQAATMLTGGRIDYYKKAQR 173
+ A + R+ Y + A+
Sbjct: 140 VPEIAHLYKSDRMRYDQTARE 160
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 67 GAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN---- 122
A P D+I + I+G G++++GG+F L + FT EYP KPP V F + ++H N
Sbjct: 69 SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQ 128
Query: 123 -----DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQR 173
D+ W+ + + +I +L D N AT R ++ + A++
Sbjct: 129 GVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 187
>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34
Length = 180
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 25/103 (24%)
Query: 82 IVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------------------- 122
I G T ++GG FK LKF +YP PP F++ M+H N
Sbjct: 41 IFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDP 100
Query: 123 ------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
+WN +V I ++ +L +PN +S AN A+ M
Sbjct: 101 QSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVM 143
>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|B Chain B, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|C Chain C, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
pdb|3RZ3|D Chain D, Human Cdc34 E2 In Complex With Cc0651 Inhibitor
Length = 183
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 44/103 (42%), Gaps = 25/103 (24%)
Query: 82 IVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN------------------- 122
I G T ++GG FK LKF +YP PP F++ M+H N
Sbjct: 44 IFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDP 103
Query: 123 ------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATM 159
+WN +V I ++ +L +PN +S AN A+ M
Sbjct: 104 QSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVM 146
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++ + + DL R Q A P DD+ A I+G + + GG+F LT+ F +YP KP
Sbjct: 5 RIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 110 PVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
P V F + ++H D+ +W+ + + +I +L DPN + A
Sbjct: 65 PKVAFTTRIYHPAINSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIA 124
Query: 158 TMLTGGRIDYYKKAQR 173
+ R Y + A+
Sbjct: 125 RIYKTDREKYNRIARE 140
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 18/112 (16%)
Query: 54 LQQWMRDLKRLQQGAP------PGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPV 107
L++ R+L L + P P DD+ A I+G + + GG+F L++ F +YP
Sbjct: 3 LKRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPF 62
Query: 108 KPPVVPFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPN 147
KPP V F + ++H N D+ +W+ + + +I +L DPN
Sbjct: 63 KPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSISSLLTDPN 114
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 24/112 (21%)
Query: 59 RDLKRLQQGAPPG-----DDDIM--LRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPV 111
R+L L PPG D D M LR A I+G T ++ G+FKL + + YP +PP
Sbjct: 11 RELHMLATEPPPGITCWQDKDQMDDLR-AQILGGANTPYEKGVFKLEVIIPERYPFEPPQ 69
Query: 112 VPFVSGMFHRN---------DL-------KWNSDYDVVAIFATIQLMLGDPN 147
+ F++ ++H N D+ W ++ + +IQL++ +PN
Sbjct: 70 IRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPN 121
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 18/126 (14%)
Query: 59 RDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVV 112
++ + L PPG ++ N +I G GT ++GG +KL L ++YP++PP V
Sbjct: 8 KETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKV 67
Query: 113 PFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATML 160
F++ ++H N D+ KW+ + + +IQ +L P + + A
Sbjct: 68 RFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHF 127
Query: 161 TGGRID 166
+ D
Sbjct: 128 KQDKND 133
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 18/126 (14%)
Query: 59 RDLKRLQQGAPPG------DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVV 112
++ + L PPG ++ N +I G GT ++GG +KL L ++YP++PP V
Sbjct: 8 KETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKV 67
Query: 113 PFVSGMFHRN---------DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATML 160
F++ ++H N D+ KW+ + + +IQ +L P + + A
Sbjct: 68 RFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHF 127
Query: 161 TGGRID 166
+ D
Sbjct: 128 KQDKND 133
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 67 GAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN---- 122
A P D+I + I+G G++++GG+F L + F+ +YP KPP V F + ++H N
Sbjct: 24 SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQ 83
Query: 123 -----DL---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQR 173
D+ W+ + + +I +L D N AT R ++ + A++
Sbjct: 84 GVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 142
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 68 APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----- 122
A P + + + +I G + F+GG FKL L +EYP+ P V F++ ++H N
Sbjct: 28 AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLG 87
Query: 123 ----DL---KWNSDYDVVAIFATIQLMLGDPN 147
D+ KW+ + + +IQ +L PN
Sbjct: 88 RICLDILKDKWSPALQIRTVLLSIQALLSAPN 119
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 68 APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----- 122
A P + + + +I G + F+GG FKL L +EYP+ P V F++ ++H N
Sbjct: 25 AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLG 84
Query: 123 ----DL---KWNSDYDVVAIFATIQLMLGDPN 147
D+ KW+ + + +IQ +L PN
Sbjct: 85 RICLDILKDKWSPALQIRTVLLSIQALLSAPN 116
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 68 APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----- 122
A P + + + +I G + F+GG FKL L +EYP+ P V F++ ++H N
Sbjct: 23 AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLG 82
Query: 123 ----DL---KWNSDYDVVAIFATIQLMLGDPN 147
D+ KW+ + + +IQ +L PN
Sbjct: 83 RICLDILKDKWSPALQIRTVLLSIQALLSAPN 114
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 68 APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----- 122
A P + + + +I G + F+GG FKL L +EYP+ P V F++ ++H N
Sbjct: 27 AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLG 86
Query: 123 ----DL---KWNSDYDVVAIFATIQLMLGDPN 147
D+ KW+ + + +IQ +L PN
Sbjct: 87 RICLDILKDKWSPALQIRTVLLSIQALLSAPN 118
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 12/92 (13%)
Query: 68 APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----- 122
A P + + + +I G + F+GG FKL L +EYP+ P V F++ ++H N
Sbjct: 30 AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLG 89
Query: 123 ----DL---KWNSDYDVVAIFATIQLMLGDPN 147
D+ KW+ + + +IQ +L PN
Sbjct: 90 RICLDILKDKWSPALQIRTVLLSIQALLSAPN 121
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 53 QLQQWMRDLKR---LQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKP 109
++ + + DL+R A P DD+ A I+G + + GG+F L++ F +YP KP
Sbjct: 6 RIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKP 65
Query: 110 PVVPFVSGMFHRN 122
P + F + ++H N
Sbjct: 66 PKISFTTKIYHPN 78
>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H
pdb|2Z5D|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 H
Length = 179
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 84 GLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN-------------DLKWNSDY 130
G GT ++GG++K+ + +YP K P + F++ +FH N + W + Y
Sbjct: 59 GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALY 118
Query: 131 DVVAIFAT-IQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVE 176
D+ IF + + +L PN N AA M +Y +K + ++
Sbjct: 119 DLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQ 165
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 68 APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----- 122
A P DD++ I G + ++ GIF+L L +YP++ P V F++ ++H N
Sbjct: 27 AEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLG 86
Query: 123 -------DLKWNSDYDVVAIFATIQLMLGDPN 147
W+ + + +IQ +L PN
Sbjct: 87 RICLDVLKTNWSPALQIRTVLLSIQALLASPN 118
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 13/100 (13%)
Query: 74 DIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----------D 123
DI I G GT ++GG F L + +YP PP + FV+ ++H N D
Sbjct: 73 DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLD 132
Query: 124 L---KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATML 160
+ +W+ + +IQ ML DP + + A M+
Sbjct: 133 ILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMM 172
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 68 APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----- 122
A P DD++ I G + ++ GIF+L L +YP++ P V F++ ++H N
Sbjct: 25 AEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLG 84
Query: 123 -------DLKWNSDYDVVAIFATIQLMLGDPN 147
W+ + + +IQ +L PN
Sbjct: 85 RICLDVLKTNWSPALQIRTVLLSIQALLASPN 116
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 68 APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----- 122
A P DD++ I G + ++ GIF+L L +YP++ P V F++ ++H N
Sbjct: 25 AEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLG 84
Query: 123 -------DLKWNSDYDVVAIFATIQLMLGDPN 147
W+ + + +IQ +L PN
Sbjct: 85 RISLDVLKTNWSPALQIRTVLLSIQALLASPN 116
>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme
Pf10_0330, Putative Homologue Of Human Ube2h
Length = 152
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 19/120 (15%)
Query: 72 DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN--------- 122
D D+M G GT ++GGI+K+ + +YP P + F++ + H N
Sbjct: 30 DFDVMFH-----GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVC 84
Query: 123 ----DLKWNSDYDVVAIFAT-IQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVEL 177
+ W Y +V +F + +L PN N AA++L + Y +K + V+L
Sbjct: 85 LDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKL 144
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
Query: 81 IIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN----------DL---KWN 127
I G GT ++GG F L + +YP PP + FV+ ++H N D+ +W+
Sbjct: 58 FIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNEWS 117
Query: 128 SDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKA 171
+ +IQ +L DP + + A M + K A
Sbjct: 118 PALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTA 161
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 21/138 (15%)
Query: 58 MRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110
+++L+ LQ+ PP D ++++ +A+++ + F L + F EYP KPP
Sbjct: 7 VKELEDLQKKPPPYLRNLSSDDANVLVWHALLLP-DQPPYHLKAFNLRISFPPEYPFKPP 65
Query: 111 VVPFVSGMFHRN-------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
++ F + ++H N W + + +++ PN+ A
Sbjct: 66 MIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLA 125
Query: 158 TMLTGGRIDYYKKAQRIV 175
+LT + K A+
Sbjct: 126 DLLTQNPELFRKNAEEFT 143
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 56/138 (40%), Gaps = 21/138 (15%)
Query: 58 MRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110
+++L+ LQ+ PP D ++++ +A+++ + F L + F EYP KPP
Sbjct: 10 VKELEDLQKKPPPYLRNLSSDDANVLVWHALLLP-DQPPYHLKAFNLRISFPPEYPFKPP 68
Query: 111 VVPFVSGMFHRN-------------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAA 157
++ F + ++H N W + + +++ PN+ A
Sbjct: 69 MIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLA 128
Query: 158 TMLTGGRIDYYKKAQRIV 175
+LT + K A+
Sbjct: 129 DLLTQNPELFRKNAEEFT 146
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 68 APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFH------- 120
A P DD++ I G + ++ GIF+L L +YP++ P V F++ ++H
Sbjct: 25 AEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAIDRLG 84
Query: 121 RNDL-----KWNSDYDVVAIFATIQLMLGDPN 147
R L W+ + + +IQ +L PN
Sbjct: 85 RISLDVLKTNWSPALQIRTVLLSIQALLASPN 116
>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12
pdb|3O2U|B Chain B, S. Cerevisiae Ubc12
Length = 190
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 81 IIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN-DLK-----------WNS 128
+IV ++ G L F + YP++PP V + +FH N DLK W+
Sbjct: 68 VIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSP 127
Query: 129 DYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDY 167
D+ +I + + +PN N+ AA +L G ++
Sbjct: 128 ALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEF 166
>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2,
Putative, From Plasmodium Falciparum
Length = 156
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 73 DDIMLRN--AIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVS----------GMFH 120
DDI L N I G GT+F+ I+ LT+ YP PP V F + G
Sbjct: 50 DDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVI 109
Query: 121 RNDL----KWNSDYDVVAIFATI-QLMLGDPN 147
+N+L WN +Y + I ++ Q ML N
Sbjct: 110 KNNLHILKNWNRNYTIETILISLRQEMLSSAN 141
>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 158
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 73 DDIMLRN--AIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVS----------GMFH 120
DDI L N I G GT+F+ I+ LT+ YP PP V F + G
Sbjct: 54 DDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGRVI 113
Query: 121 RNDL----KWNSDYDVVAIFATI-QLMLGDPN 147
+N+L WN +Y + I ++ Q ML N
Sbjct: 114 KNNLHILKNWNRNYTIETILISLRQEMLSSAN 145
>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding
Domain In Nedd8's E1
Length = 160
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 12/115 (10%)
Query: 71 GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN-DLK---- 125
D D +L +++ + G F + K + YP PP V + ++H N DL+
Sbjct: 29 SDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETXVYHPNIDLEGNVC 88
Query: 126 -------WNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQR 173
W + +I +Q + +PN N++AA +L R + + QR
Sbjct: 89 LNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQR 143
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 12/115 (10%)
Query: 71 GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN-DLK---- 125
D D +L +++ + G F + K + YP PP V + ++H N DL+
Sbjct: 49 SDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVA 108
Query: 126 -------WNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQR 173
W + +I +Q + +PN N++AA +L R + + QR
Sbjct: 109 LNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQR 163
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 71 GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN 122
+ DI +G GT ++GG F + ++ EYP KPP + F + ++H N
Sbjct: 27 SESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPN 78
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 72 DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN 122
D++ I G T ++GG ++L +K + YP PP V F++ ++H N
Sbjct: 37 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 87
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 72 DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN 122
D++ I G T ++GG ++L +K + YP PP V F++ ++H N
Sbjct: 35 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 85
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 72 DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN 122
D++ I G T ++GG ++L +K + YP PP V F++ ++H N
Sbjct: 34 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 84
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 72 DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN 122
D++ I G T ++GG ++L +K + YP PP V F++ ++H N
Sbjct: 50 DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 100
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 82 IVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN 122
I G T ++GG ++L +K + YP PP V F++ ++H N
Sbjct: 96 IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPN 136
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 71 GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN 122
+ DI +G GT ++GG F + ++ EYP KPP + F + ++H N
Sbjct: 28 SESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPN 79
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 90 FDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN 122
+D G F++ + F EYP KPP + F + ++H N
Sbjct: 46 YDKGAFRIEINFPAEYPFKPPKITFKTKIYHPN 78
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 90 FDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN 122
+D G F++ + F EYP KPP + F + ++H N
Sbjct: 48 YDKGAFRIEINFPAEYPFKPPKITFKTKIYHPN 80
>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
pdb|2A7L|B Chain B, Structure Of The Human Hypothetical Ubiquitin-Conjugating
Enzyme, Loc55284
Length = 136
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 48 GGLKCQLQQWMRDLKRLQQGAPPGD--DDIMLRNAI------IVGLGGTLFDGGIFKLTL 99
G + ++ ++L LQ PPG ++ ++N+I + G GTL++G F+L
Sbjct: 18 GSMASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLF 77
Query: 100 KFTKEYPVKPPVVPFV 115
KF+ YP P V F
Sbjct: 78 KFSSRYPFDSPQVMFT 93
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 83 VGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFV 115
VGL T++ ++KL + F +YP+KPP+V F+
Sbjct: 43 VGLENTIYANEVYKLKIIFPDDYPLKPPIVYFL 75
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 14/98 (14%)
Query: 84 GLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN-------------DLKWNSDY 130
G GT ++ G + L ++ +YP K P + F + + H N + W Y
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQTWTPMY 105
Query: 131 DVVAIFAT-IQLMLGDPNLYSAANQQAATMLTGGRIDY 167
+ IF + +L PN N QAA +L R+ +
Sbjct: 106 QLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGF 143
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 83 VGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFV 115
VGL T++ ++K+ + F YP+KPP+V F+
Sbjct: 57 VGLENTIYANEVYKIKIIFPDNYPLKPPIVYFL 89
>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating
Enzyme Variant Uev1a
Length = 170
Score = 33.9 bits (76), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 18/95 (18%)
Query: 72 DDDIMLR--NAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVS-----GMFHRNDL 124
D+D+ L +I+G T+++ I+ L ++ +YP PP V FV+ G+ N +
Sbjct: 63 DEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGV 122
Query: 125 ----------KWNSDYDVVAIFATI-QLMLGDPNL 148
KW + Y + + + +LM+ N+
Sbjct: 123 VDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENM 157
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 15/116 (12%)
Query: 69 PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFV------------S 116
P + D+ AII G T ++ F++ ++ YP+ PP + F+ +
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT 100
Query: 117 GMFHRNDLK---WNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYK 169
G N LK W +D++ + +L +P S + ++ G + Y+
Sbjct: 101 GEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIRCGDMSAYQ 156
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 47/116 (40%), Gaps = 15/116 (12%)
Query: 69 PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFV------------S 116
P + D+ AII G T ++ F++ ++ YP+ PP + F+ +
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSAT 100
Query: 117 GMFHRNDLK---WNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYK 169
G N LK W +D++ + +L +P S + ++ G + Y+
Sbjct: 101 GEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQ 156
>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2
Variant 1 (Uev- 1)
Length = 160
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 18/95 (18%)
Query: 72 DDDIMLR--NAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVS-----GMFHRNDL 124
D+D+ L +I+G T+++ I+ L ++ +YP PP V FV+ G+ N +
Sbjct: 53 DEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGV 112
Query: 125 ----------KWNSDYDVVAIFATI-QLMLGDPNL 148
KW + Y + + + +LM+ N+
Sbjct: 113 VDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENM 147
>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 139
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 18/95 (18%)
Query: 72 DDDIMLR--NAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFV-----------SGM 118
D+D+ L +I+G T ++ I+ L ++ +YP PP V FV SGM
Sbjct: 32 DEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGM 91
Query: 119 FHRNDL----KWNSDYDVVAIFATI-QLMLGDPNL 148
+ KW + Y + + + +LM+ N+
Sbjct: 92 VDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENM 126
>pdb|1J74|A Chain A, Crystal Structure Of Mms2
pdb|1J7D|A Chain A, Crystal Structure Of Hmms2-Hubc13
Length = 145
Score = 33.1 bits (74), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 18/95 (18%)
Query: 72 DDDIMLR--NAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFV-----------SGM 118
D+D+ L +I+G T ++ I+ L ++ +YP PP V FV SGM
Sbjct: 38 DEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGM 97
Query: 119 FHRNDL----KWNSDYDVVAIFATI-QLMLGDPNL 148
+ KW + Y + + + +LM+ N+
Sbjct: 98 VDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENM 132
>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|D Chain D, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|F Chain F, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|I Chain I, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|K Chain K, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|M Chain M, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|P Chain P, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|R Chain R, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|T Chain T, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|W Chain W, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Y Chain Y, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|AA Chain a, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|DD Chain d, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|FF Chain f, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|HH Chain h, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|KK Chain k, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|MM Chain m, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|OO Chain o, Crystalstructure Of The Ubiquitin Protease
Length = 138
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 18/95 (18%)
Query: 72 DDDIMLR--NAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFV-----------SGM 118
D+D+ L +I+G T ++ I+ L ++ +YP PP V FV SGM
Sbjct: 33 DEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGM 92
Query: 119 FHRNDL----KWNSDYDVVAIFATI-QLMLGDPNL 148
+ KW + Y + + + +LM+ N+
Sbjct: 93 VDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENM 127
>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|E Chain E, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|I Chain I, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 18/95 (18%)
Query: 72 DDDIMLR--NAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFV-----------SGM 118
D+D+ L +I+G T ++ I+ L ++ +YP PP V FV SGM
Sbjct: 43 DEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKINMNGINNSSGM 102
Query: 119 FHRNDL----KWNSDYDVVAIFATI-QLMLGDPNL 148
+ KW + Y + + + +LM+ N+
Sbjct: 103 VDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENM 137
>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|F Chain F, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|I Chain I, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|L Chain L, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 142
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 44/95 (46%), Gaps = 18/95 (18%)
Query: 72 DDDIMLR--NAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVS-----GMFHRNDL 124
D+D+ L +I+G T+++ I+ L ++ +YP PP V FV+ G+ N +
Sbjct: 35 DEDMTLTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGV 94
Query: 125 ----------KWNSDYDVVAIFATI-QLMLGDPNL 148
KW + Y + + + +LM+ N+
Sbjct: 95 VDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENM 129
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 15/116 (12%)
Query: 69 PPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFV-SGMFHRN----- 122
P + D+ AII G T ++ F++ ++ YP+ PP + F+ + + H N
Sbjct: 41 PIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSAT 100
Query: 123 ---------DLKWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYK 169
+W +D++ + +L +P S + ++ G + Y+
Sbjct: 101 GEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVSDSPLDVDIGNIIRCGDMSAYQ 156
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 72 DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVV 112
++ + + +I G T + G F+ + F ++YP PP+V
Sbjct: 106 EERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLV 146
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 68 APPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVS--GMFHRN 122
A P +I+ + ++ G T ++GG + L F +E+P KPP + ++ G F N
Sbjct: 36 AEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCN 92
>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
pdb|4DS2|B Chain B, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma
Cruzi
Length = 167
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 92 GGIFKLTLKFTKEYPVKPPVVPFVSGMF 119
G ++L++ F+ +YP +PP V FV+ ++
Sbjct: 68 GNTYQLSVLFSDDYPHEPPTVRFVTPVY 95
>pdb|2I2L|A Chain A, X-Ray Crystal Structure Of Protein Yopx From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr411.
pdb|2I2L|B Chain B, X-Ray Crystal Structure Of Protein Yopx From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr411.
pdb|2I2L|C Chain C, X-Ray Crystal Structure Of Protein Yopx From Bacillus
Subtilis. Northeast Structural Genomics Consortium
Target Sr411
Length = 142
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 86 GGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKWNSDYDVVAI----FATIQL 141
G ++D I K+T + V V F G+F + K ++DYDV A+ +ATI++
Sbjct: 62 GKFIYDRSIVKITSDDKESSDVCE--VKFSDGVFQVDVSKISADYDVTAVGWVEYATIEV 119
Query: 142 M 142
+
Sbjct: 120 I 120
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 73 DDIMLR--NAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVS 116
DDI + N I+G + + I+ L++ YP PP V F+S
Sbjct: 35 DDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFIS 80
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 73 DDIMLR--NAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVS 116
DDI + N I+G + + I+ L++ YP PP V F+S
Sbjct: 34 DDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFIS 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,428,244
Number of Sequences: 62578
Number of extensions: 202810
Number of successful extensions: 476
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 326
Number of HSP's gapped (non-prelim): 124
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)