Query 048648
Match_columns 182
No_of_seqs 146 out of 1191
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 11:36:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 100.0 1.4E-45 3.1E-50 278.0 15.0 128 54-181 3-148 (148)
2 COG5078 Ubiquitin-protein liga 100.0 7.7E-44 1.7E-48 273.5 16.4 129 52-180 5-152 (153)
3 KOG0419 Ubiquitin-protein liga 100.0 8.1E-42 1.8E-46 251.7 15.4 133 50-182 2-152 (152)
4 PTZ00390 ubiquitin-conjugating 100.0 3.4E-41 7.3E-46 260.3 15.7 128 53-180 3-148 (152)
5 PLN00172 ubiquitin conjugating 100.0 8.9E-41 1.9E-45 256.7 15.8 127 53-179 2-146 (147)
6 KOG0425 Ubiquitin-protein liga 100.0 4.3E-38 9.3E-43 238.1 15.0 129 53-181 6-166 (171)
7 KOG0424 Ubiquitin-protein liga 100.0 1.6E-37 3.4E-42 232.0 14.1 131 50-180 2-157 (158)
8 KOG0426 Ubiquitin-protein liga 100.0 1.6E-36 3.4E-41 223.9 13.4 129 50-178 2-162 (165)
9 KOG0418 Ubiquitin-protein liga 100.0 2.1E-36 4.5E-41 235.1 13.5 129 53-181 4-154 (200)
10 PF00179 UQ_con: Ubiquitin-con 100.0 4.7E-36 1E-40 228.1 13.5 120 56-175 1-140 (140)
11 cd00195 UBCc Ubiquitin-conjuga 100.0 6.4E-35 1.4E-39 222.2 14.4 121 55-175 2-141 (141)
12 smart00212 UBCc Ubiquitin-conj 100.0 2.5E-34 5.4E-39 219.9 14.5 125 55-179 1-145 (145)
13 KOG0422 Ubiquitin-protein liga 100.0 5E-34 1.1E-38 212.2 13.0 129 52-181 2-150 (153)
14 KOG0421 Ubiquitin-protein liga 100.0 1.3E-33 2.8E-38 211.1 13.5 126 51-177 28-171 (175)
15 KOG0416 Ubiquitin-protein liga 100.0 4.2E-32 9.1E-37 208.0 11.9 128 54-181 5-149 (189)
16 KOG0420 Ubiquitin-protein liga 100.0 3.3E-30 7.1E-35 198.0 12.9 133 46-179 22-174 (184)
17 KOG0423 Ubiquitin-protein liga 100.0 8.9E-29 1.9E-33 190.3 7.7 132 50-181 8-157 (223)
18 KOG0894 Ubiquitin-protein liga 99.9 5.7E-24 1.2E-28 168.9 11.6 97 49-147 2-119 (244)
19 KOG0427 Ubiquitin conjugating 99.9 9.5E-22 2.1E-26 145.3 9.4 103 50-152 13-134 (161)
20 KOG0429 Ubiquitin-conjugating 99.8 4.9E-18 1.1E-22 135.6 13.2 125 55-180 22-170 (258)
21 KOG0428 Non-canonical ubiquiti 99.8 1.7E-18 3.8E-23 140.2 9.1 91 51-144 10-121 (314)
22 KOG0895 Ubiquitin-conjugating 99.5 6E-15 1.3E-19 138.9 6.4 133 19-151 815-979 (1101)
23 KOG0896 Ubiquitin-conjugating 99.4 1.1E-12 2.3E-17 97.7 6.4 92 52-143 5-121 (138)
24 KOG0895 Ubiquitin-conjugating 99.2 3.2E-11 6.9E-16 114.1 9.8 95 51-145 281-404 (1101)
25 KOG0897 Predicted ubiquitin-co 97.1 0.0007 1.5E-08 49.5 4.2 58 95-156 13-90 (122)
26 PF05743 UEV: UEV domain; Int 96.9 0.0075 1.6E-07 44.8 8.0 67 74-144 31-116 (121)
27 PF14461 Prok-E2_B: Prokaryoti 96.8 0.0036 7.9E-08 47.1 6.0 55 91-145 34-106 (133)
28 PF05773 RWD: RWD domain; Int 96.4 0.015 3.3E-07 41.4 6.5 64 55-118 4-74 (113)
29 smart00591 RWD domain in RING 95.9 0.06 1.3E-06 37.9 7.6 47 92-145 40-86 (107)
30 PF08694 UFC1: Ubiquitin-fold 94.7 0.011 2.4E-07 45.0 0.7 61 51-114 23-96 (161)
31 PF14462 Prok-E2_E: Prokaryoti 93.9 0.39 8.5E-06 35.8 7.3 68 76-144 24-120 (122)
32 KOG3357 Uncharacterized conser 91.5 0.41 8.9E-06 36.0 4.6 66 48-113 23-98 (167)
33 PF14457 Prok-E2_A: Prokaryoti 90.4 0.39 8.5E-06 37.5 3.9 50 96-145 56-126 (162)
34 KOG2391 Vacuolar sorting prote 90.0 1.8 4E-05 37.6 7.8 91 52-146 20-138 (365)
35 PF09765 WD-3: WD-repeat regio 89.9 0.56 1.2E-05 40.0 4.7 83 52-143 99-186 (291)
36 PF06113 BRE: Brain and reprod 84.9 11 0.00024 32.8 9.7 49 75-129 53-108 (333)
37 KOG4018 Uncharacterized conser 84.2 5.6 0.00012 32.4 7.2 55 57-112 7-68 (215)
38 KOG0309 Conserved WD40 repeat- 74.6 11 0.00023 36.5 6.7 65 52-117 420-491 (1081)
39 PF14824 Sirohm_synth_M: Siroh 52.1 9 0.00019 21.5 1.1 24 41-64 6-29 (30)
40 cd00421 intradiol_dioxygenase 37.9 40 0.00087 25.4 3.2 24 92-115 65-89 (146)
41 smart00340 HALZ homeobox assoc 36.6 30 0.00065 20.9 1.8 17 52-68 19-35 (44)
42 cd03457 intradiol_dioxygenase_ 30.7 59 0.0013 25.9 3.2 26 91-116 85-110 (188)
43 PF14135 DUF4302: Domain of un 26.7 3.3E+02 0.0071 22.1 7.0 48 53-105 10-57 (235)
44 PF03847 TFIID_20kDa: Transcri 26.6 1.9E+02 0.0041 19.1 4.6 43 138-180 4-46 (68)
45 PF14532 Sigma54_activ_2: Sigm 25.5 1.1E+02 0.0025 22.1 3.8 30 50-88 3-32 (138)
46 cd03459 3,4-PCD Protocatechuat 25.4 86 0.0019 24.2 3.2 25 92-116 72-101 (158)
47 cd07981 TAF12 TATA Binding Pro 25.3 1.7E+02 0.0038 19.2 4.3 43 138-180 6-48 (72)
48 PF08203 RNA_polI_A14: Yeast R 25.0 55 0.0012 22.3 1.7 13 52-64 59-71 (76)
49 PF13950 Epimerase_Csub: UDP-g 23.8 67 0.0015 20.7 2.0 19 125-143 37-55 (62)
50 KOG4445 Uncharacterized conser 23.5 90 0.002 27.1 3.1 26 93-118 45-70 (368)
51 PHA02931 hypothetical protein; 22.2 63 0.0014 20.9 1.5 27 12-38 36-62 (72)
52 PF01175 Urocanase: Urocanase; 22.1 1.1E+02 0.0023 28.5 3.5 29 153-181 271-299 (546)
53 PF04881 Adeno_GP19K: Adenovir 21.2 91 0.002 23.5 2.4 31 71-101 43-74 (139)
54 PF06113 BRE: Brain and reprod 20.9 1E+02 0.0022 26.9 3.0 24 93-116 306-329 (333)
55 PF12018 DUF3508: Domain of un 20.8 1E+02 0.0022 26.0 3.0 29 152-180 239-267 (281)
56 PF04904 NCD1: NAB conserved r 20.8 2.1E+02 0.0046 19.7 3.9 48 21-69 31-78 (82)
57 PRK05414 urocanate hydratase; 20.5 1.2E+02 0.0027 28.1 3.6 29 153-181 281-309 (556)
58 TIGR01228 hutU urocanate hydra 20.4 1.2E+02 0.0027 28.0 3.5 29 153-181 272-300 (545)
59 PF09606 Med15: ARC105 or Med1 20.1 35 0.00075 33.3 0.0 25 93-117 714-738 (799)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-45 Score=278.02 Aligned_cols=128 Identities=26% Similarity=0.526 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc---
Q 048648 54 LQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL--- 124 (182)
Q Consensus 54 ~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~--- 124 (182)
.+||.+|+++|.++++. +++|++.|+++|.||.|||||||+|++.|.||++||++||+|+|.|+||||||+
T Consensus 3 ~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G 82 (148)
T KOG0417|consen 3 SKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNG 82 (148)
T ss_pred HHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCccc
Confidence 46999999999998887 589999999999999999999999999999999999999999999999999999
Q ss_pred ---------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 125 ---------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 125 ---------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
+|+|+++++.||.+|+++|.+|++++|++.++|.+|+.|+.+|.++||+|+++||+.
T Consensus 83 ~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~~ 148 (148)
T KOG0417|consen 83 RICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAMG 148 (148)
T ss_pred cchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999999999999973
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-44 Score=273.46 Aligned_cols=129 Identities=37% Similarity=0.654 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648 52 CQLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL 124 (182)
Q Consensus 52 ~~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~ 124 (182)
.+.+||++|++.|+++++. +++|++.|+++|.||++||||||+|++.|.||++||++||+|+|.|+|||||||
T Consensus 5 ~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~ 84 (153)
T COG5078 5 SALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVD 84 (153)
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcC
Confidence 3889999999999999966 444999999999999999999999999999999999999999999999999999
Q ss_pred ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
.|+|++++++||.+|+++|.+||.++|+|.+||++|++|+++|.++||+++++|+.
T Consensus 85 ~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~ 152 (153)
T COG5078 85 PSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE 152 (153)
T ss_pred CCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999999999999999999999999999999985
No 3
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-42 Score=251.66 Aligned_cols=133 Identities=46% Similarity=0.778 Sum_probs=127.8
Q ss_pred cHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCc
Q 048648 50 LKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRND 123 (182)
Q Consensus 50 ~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI 123 (182)
+..|-+||++|+++|+++++. .++|++.|.++|+||.+|||+||+|++.+.|+++||.+||.|+|++..|||||
T Consensus 2 stpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNv 81 (152)
T KOG0419|consen 2 STPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNV 81 (152)
T ss_pred CchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCc
Confidence 456789999999999999887 78999999999999999999999999999999999999999999999999999
Q ss_pred c------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhcC
Q 048648 124 L------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKAI 182 (182)
Q Consensus 124 ~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~i 182 (182)
| .|+|.+++.+||.+||+||.+|++++|+|.+||++|++|+++|.++++..+.++...+
T Consensus 82 ya~G~iClDiLqNrWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqsw~~~ 152 (152)
T KOG0419|consen 82 YADGSICLDILQNRWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQSWSDI 152 (152)
T ss_pred CCCCcchHHHHhcCCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHhhccC
Confidence 9 8999999999999999999999999999999999999999999999999999987654
No 4
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=100.00 E-value=3.4e-41 Score=260.31 Aligned_cols=128 Identities=24% Similarity=0.447 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc--
Q 048648 53 QLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL-- 124 (182)
Q Consensus 53 ~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~-- 124 (182)
+.+||++|+++++++++. .++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~ 82 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL 82 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence 469999999999988766 778999999999999999999999999999999999999999999999999999
Q ss_pred ----------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 125 ----------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 125 ----------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
+|+|++|+++||.+|+++|.+|++++|+|.+||++|++|+.+|.++|++|+++||.
T Consensus 83 G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~ 148 (152)
T PTZ00390 83 GRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK 148 (152)
T ss_pred CeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999999999999999999999999999999999986
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=100.00 E-value=8.9e-41 Score=256.72 Aligned_cols=127 Identities=25% Similarity=0.482 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc--
Q 048648 53 QLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL-- 124 (182)
Q Consensus 53 ~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~-- 124 (182)
+.+||++|+++|+++++. .++|++.|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||||+
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~ 81 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN 81 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence 358999999999988766 778999999999999999999999999999999999999999999999999998
Q ss_pred ----------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHh
Q 048648 125 ----------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSW 179 (182)
Q Consensus 125 ----------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a 179 (182)
+|+|++|+++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus 82 G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a 146 (147)
T PLN00172 82 GSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA 146 (147)
T ss_pred CEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence 7999999999999999999999999999999999999999999999999999997
No 6
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-38 Score=238.13 Aligned_cols=129 Identities=35% Similarity=0.526 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-
Q 048648 53 QLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL- 124 (182)
Q Consensus 53 ~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~- 124 (182)
+..-|+++|++|++.+.. +++|+++|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.|++||||||
T Consensus 6 a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~ 85 (171)
T KOG0425|consen 6 ASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYE 85 (171)
T ss_pred hHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCC
Confidence 556789999999998877 778999999999999999999999999999999999999999999999999999
Q ss_pred ------------------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 125 ------------------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 125 ------------------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
.|+|..|+++||++|.+||.+||.++|+|-|||+.|++++++|.+++++++.++..
T Consensus 86 ~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r~vr~s~e 165 (171)
T KOG0425|consen 86 DGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRRCVRRSQE 165 (171)
T ss_pred CCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999998865
Q ss_pred c
Q 048648 181 A 181 (182)
Q Consensus 181 ~ 181 (182)
.
T Consensus 166 ~ 166 (171)
T KOG0425|consen 166 E 166 (171)
T ss_pred h
Confidence 4
No 7
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-37 Score=232.01 Aligned_cols=131 Identities=29% Similarity=0.488 Sum_probs=125.0
Q ss_pred cHHHHHHHHHHHHHHHcCCCC-----------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc
Q 048648 50 LKCQLQQWMRDLKRLQQGAPP-----------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM 118 (182)
Q Consensus 50 ~~~~~~RL~~El~~l~~~~~~-----------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i 118 (182)
++.++.||++|-+.+.++.+. +..|++.|.|.|.|+.||+||||.|.+++.||++||.+||+|+|.++.
T Consensus 2 s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl 81 (158)
T KOG0424|consen 2 SGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPL 81 (158)
T ss_pred cchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCC
Confidence 445689999999999998776 367899999999999999999999999999999999999999999999
Q ss_pred ccCCcc--------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 119 FHRNDL--------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 119 ~HPnI~--------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
|||||| +|+|+.||.+||..||.||.+||+.+|+|.+|..+|++|+.+|.++||.++++||.
T Consensus 82 ~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~ 157 (158)
T KOG0424|consen 82 FHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK 157 (158)
T ss_pred cCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence 999999 69999999999999999999999999999999999999999999999999999986
No 8
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-36 Score=223.87 Aligned_cols=129 Identities=32% Similarity=0.556 Sum_probs=125.0
Q ss_pred cHHHHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCC
Q 048648 50 LKCQLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN 122 (182)
Q Consensus 50 ~~~~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 122 (182)
+..|+|||++|+++|-.++++ +++|++.|.|+|.||+||+|+||+|-.++.||.+||.+||+++|...+||||
T Consensus 2 ~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPN 81 (165)
T KOG0426|consen 2 AGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPN 81 (165)
T ss_pred chhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCc
Confidence 457899999999999999888 8899999999999999999999999999999999999999999999999999
Q ss_pred cc-------------------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHH
Q 048648 123 DL-------------------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVEL 177 (182)
Q Consensus 123 I~-------------------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~ 177 (182)
|| .|+|..+++.||+++.+||.+||-++++|.+|+.++++|+.+|++.|++.+.|
T Consensus 82 iy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~lvrK 161 (165)
T KOG0426|consen 82 IYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKRLVRK 161 (165)
T ss_pred ccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99 89999999999999999999999999999999999999999999999999987
Q ss_pred H
Q 048648 178 S 178 (182)
Q Consensus 178 ~ 178 (182)
.
T Consensus 162 t 162 (165)
T KOG0426|consen 162 T 162 (165)
T ss_pred h
Confidence 5
No 9
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-36 Score=235.13 Aligned_cols=129 Identities=21% Similarity=0.401 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHcCCCC---------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCc
Q 048648 53 QLQQWMRDLKRLQQGAPP---------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRND 123 (182)
Q Consensus 53 ~~~RL~~El~~l~~~~~~---------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI 123 (182)
+.+||++|.+++.+++.. ..+|+...++.|.||+|||||||+|.++|++|++||++||+|+|.|+||||||
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV 83 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV 83 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence 679999999999988753 66899999999999999999999999999999999999999999999999999
Q ss_pred c-------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 124 L-------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 124 ~-------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
+ .|+|++|++++|++||++|..|++.+|.+..+|++|.++++.|.++||.|+..||..
T Consensus 84 Ss~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~fA~~ 154 (200)
T KOG0418|consen 84 SSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEFAGG 154 (200)
T ss_pred CcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC
Confidence 9 899999999999999999999999999999999999999999999999999999863
No 10
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=100.00 E-value=4.7e-36 Score=228.09 Aligned_cols=120 Identities=34% Similarity=0.682 Sum_probs=109.6
Q ss_pred HHHHHHHHHHcCCCC------CC-CCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc----
Q 048648 56 QWMRDLKRLQQGAPP------GD-DDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL---- 124 (182)
Q Consensus 56 RL~~El~~l~~~~~~------~~-~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~---- 124 (182)
||++|++++++.++. .+ +|++.|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~ 80 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR 80 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence 899999999998877 33 4999999999999999999999999999999999999999999999999999
Q ss_pred ---------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHH
Q 048648 125 ---------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIV 175 (182)
Q Consensus 125 ---------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~ 175 (182)
.|+|++++.+||.+|+++|.+|+.++|+|.+|+++|++|+++|.++||+|.
T Consensus 81 icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~ 140 (140)
T PF00179_consen 81 ICLDILNPESWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA 140 (140)
T ss_dssp BGHGGGTTTTC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred chhhhhhcccCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence 399999999999999999999999999999999999999999999999984
No 11
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=100.00 E-value=6.4e-35 Score=222.23 Aligned_cols=121 Identities=31% Similarity=0.630 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc----
Q 048648 55 QQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL---- 124 (182)
Q Consensus 55 ~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~---- 124 (182)
+||++|++++++..+. .++|++.|+++|.||++|||+||.|+++|.||++||.+||+|+|.|+++||||+
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~ 81 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK 81 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence 7999999999998766 667999999999999999999999999999999999999999999999999999
Q ss_pred --------C-CCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHH
Q 048648 125 --------K-WNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIV 175 (182)
Q Consensus 125 --------~-W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~ 175 (182)
. |+|++++++||.+|+++|.+|+.++|+|.+||.+|++|+++|.++|++++
T Consensus 82 icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~ 141 (141)
T cd00195 82 ICLSILKTHGWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT 141 (141)
T ss_pred CchhhcCCCCcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence 4 99999999999999999999999999999999999999999999999874
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=100.00 E-value=2.5e-34 Score=219.91 Aligned_cols=125 Identities=36% Similarity=0.649 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHcCCCC------CC-CCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc---
Q 048648 55 QQWMRDLKRLQQGAPP------GD-DDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL--- 124 (182)
Q Consensus 55 ~RL~~El~~l~~~~~~------~~-~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~--- 124 (182)
+||++|++++++..+. .+ +|++.|+++|.||++|||+||.|++.|.||++||.+||+|+|.++++||||+
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G 80 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG 80 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence 5999999999998776 34 4999999999999999999999999999999999999999999999999999
Q ss_pred ----------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHh
Q 048648 125 ----------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSW 179 (182)
Q Consensus 125 ----------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a 179 (182)
+|+|++++++||.+|+++|.+|+.++|+|.+|+++|++|++.|.++|++++++++
T Consensus 81 ~icl~~l~~~~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~ 145 (145)
T smart00212 81 EICLDILKQEKWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA 145 (145)
T ss_pred CEehhhcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 5999999999999999999999999999999999999999999999999999874
No 13
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-34 Score=212.23 Aligned_cols=129 Identities=17% Similarity=0.372 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648 52 CQLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL 124 (182)
Q Consensus 52 ~~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~ 124 (182)
.+.+||++||..|+++... +++|++.|++.|. |++-||..|.|+++|.||.+||++||+|.|.|+|||||||
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD 80 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD 80 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence 3579999999999998876 8889999999998 8999999999999999999999999999999999999999
Q ss_pred -------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 125 -------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 125 -------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
+|.|+++.++||++|.+++.+|+++.|++.|+|..|.+|+..|.++|.++++||+..
T Consensus 81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e~ 150 (153)
T KOG0422|consen 81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSEK 150 (153)
T ss_pred CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcCc
Confidence 899999999999999999999999999999999999999999999999999999864
No 14
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-33 Score=211.11 Aligned_cols=126 Identities=33% Similarity=0.544 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648 51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL 124 (182)
Q Consensus 51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~ 124 (182)
....+||++||-.|.....+ +++|++.|.++|.||++|+|+|-.|++.+.||.+||++||+|+|+|+.||||||
T Consensus 28 ~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD 107 (175)
T KOG0421|consen 28 HSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVD 107 (175)
T ss_pred chHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcc
Confidence 46679999999999987666 778999999999999999999999999999999999999999999999999999
Q ss_pred ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHH
Q 048648 125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVEL 177 (182)
Q Consensus 125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~ 177 (182)
.|+..++++.||++||++|-+||.++|+|..||+++. |.++|.+.+.+..++
T Consensus 108 ~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~ 171 (175)
T KOG0421|consen 108 LSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE 171 (175)
T ss_pred ccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence 8999999999999999999999999999999999998 999999998877654
No 15
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.2e-32 Score=208.05 Aligned_cols=128 Identities=24% Similarity=0.406 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHcCCCC---CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc------
Q 048648 54 LQQWMRDLKRLQQGAPP---GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL------ 124 (182)
Q Consensus 54 ~~RL~~El~~l~~~~~~---~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~------ 124 (182)
.||+..|+..|...... .++++..++|.+.||.+|||+||+|+++|.+|++||++.|+|.|+++||||||+
T Consensus 5 ~rRid~Dv~KL~~s~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsV 84 (189)
T KOG0416|consen 5 KRRIDTDVMKLLMSDYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSV 84 (189)
T ss_pred ccchhhHHHHHHhcCCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCcc
Confidence 48999999999887766 777799999999999999999999999999999999999999999999999999
Q ss_pred -------CCCCcccHHHHHHH-HHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 125 -------KWNSDYDVVAIFAT-IQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 125 -------~W~p~~tl~~il~~-I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
.|+|.+++..|+.. |-.||..||+.+|+|.+||.+|..+++.|.+++++++++||..
T Consensus 85 CLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~ 149 (189)
T KOG0416|consen 85 CLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATP 149 (189)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence 89999999999987 6789999999999999999999999999999999999999964
No 16
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.3e-30 Score=197.97 Aligned_cols=133 Identities=21% Similarity=0.369 Sum_probs=119.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHcCCCC------CCCCcce--EEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccc
Q 048648 46 VGGGLKCQLQQWMRDLKRLQQGAPP------GDDDIML--RNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSG 117 (182)
Q Consensus 46 ~~~~~~~~~~RL~~El~~l~~~~~~------~~~~~~~--w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~ 117 (182)
+..+.+.+.-||++|+.++.--+.. ..++... ++++|. |+++.|.||.|+|.+.+|+.||+.||+|+|+|+
T Consensus 22 ~~~~~s~a~lrl~~di~elnLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltk 100 (184)
T KOG0420|consen 22 TRKKVSAALLRLKKDILELNLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTK 100 (184)
T ss_pred ccccccHHHHHHHhhhhhccCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeec
Confidence 3445567788999999888764443 3455555 999997 999999999999999999999999999999999
Q ss_pred cccCCcc------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHh
Q 048648 118 MFHRNDL------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSW 179 (182)
Q Consensus 118 i~HPnI~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a 179 (182)
||||||+ +|+|+.++.+|+.+|+.++.+|+++||+|.+||..+++|++.|+..||+....++
T Consensus 101 V~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~ 174 (184)
T KOG0420|consen 101 VYHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGC 174 (184)
T ss_pred cccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCc
Confidence 9999999 9999999999999999999999999999999999999999999999999887654
No 17
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=8.9e-29 Score=190.32 Aligned_cols=132 Identities=30% Similarity=0.502 Sum_probs=125.8
Q ss_pred cHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCc
Q 048648 50 LKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRND 123 (182)
Q Consensus 50 ~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI 123 (182)
.+..++.+.+|++.|..++++ +++|.....+.|.||.||||++|+|+..+.+..|||.+||+-.|+|+||||||
T Consensus 8 pp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNV 87 (223)
T KOG0423|consen 8 PPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNV 87 (223)
T ss_pred ChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCc
Confidence 456678999999999999988 78899999999999999999999999999999999999999999999999999
Q ss_pred c------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 124 L------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 124 ~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
. +|+|++.++.||..|..+|..|++++.+|.+|++++.++.++|.+.||.++.-+|..
T Consensus 88 aaNGEICVNtLKkDW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p 157 (223)
T KOG0423|consen 88 AANGEICVNTLKKDWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP 157 (223)
T ss_pred ccCceehhhhhhcccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence 9 999999999999999999999999999999999999999999999999999988753
No 18
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=5.7e-24 Score=168.87 Aligned_cols=97 Identities=23% Similarity=0.528 Sum_probs=89.9
Q ss_pred CcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccc-----
Q 048648 49 GLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSG----- 117 (182)
Q Consensus 49 ~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~----- 117 (182)
.+..+.+||++||+.|.+++.+ .++||+.||.+|.||+||||+||.|+..+.||++||++||.|+.+|+
T Consensus 2 a~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFk 81 (244)
T KOG0894|consen 2 ASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFK 81 (244)
T ss_pred cchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCcee
Confidence 3467889999999999999988 88999999999999999999999999999999999999999999887
Q ss_pred ----------cccCCccCCCCcccHHHHHHHHHHhhCCCC
Q 048648 118 ----------MFHRNDLKWNSDYDVVAIFATIQLMLGDPN 147 (182)
Q Consensus 118 ----------i~HPnI~~W~p~~tl~~il~~I~~ll~~p~ 147 (182)
-|||. .|+|.|++.+||.+|.++|.+-.
T Consensus 82 tntRLCLSiSDfHPd--sWNP~WsVStILtGLlSFM~e~~ 119 (244)
T KOG0894|consen 82 TNTRLCLSISDFHPD--SWNPGWSVSTILTGLLSFMTEDS 119 (244)
T ss_pred cCceEEEeccccCcC--cCCCcccHHHHHHHHHHHHhcCC
Confidence 48888 99999999999999999998543
No 19
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=9.5e-22 Score=145.34 Aligned_cols=103 Identities=22% Similarity=0.417 Sum_probs=94.1
Q ss_pred cHHHHHHHHHHHHHHHcCCCC-----CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc-ccCCc
Q 048648 50 LKCQLQQWMRDLKRLQQGAPP-----GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM-FHRND 123 (182)
Q Consensus 50 ~~~~~~RL~~El~~l~~~~~~-----~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnI 123 (182)
+..+.+||++|+.+++.+++. ..+|+..|.+-+.|.+||.|+|.+|.+.++||+.||+..|.|-|..++ .||+|
T Consensus 13 s~~at~RLqKEl~e~q~~pP~G~~~~v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHi 92 (161)
T KOG0427|consen 13 SKIATNRLQKELSEWQNNPPTGFKHRVTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHI 92 (161)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcceeecccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCce
Confidence 457889999999999999988 788999999999999999999999999999999999999999999887 89999
Q ss_pred c------------CCCCcccHHHHHHHHHHhhCC-CCCCChh
Q 048648 124 L------------KWNSDYDVVAIFATIQLMLGD-PNLYSAA 152 (182)
Q Consensus 124 ~------------~W~p~~tl~~il~~I~~ll~~-p~~~~p~ 152 (182)
| +|+|++++.+|.++|.+||+. ..-..|.
T Consensus 93 YSNGHICL~iL~d~WsPAmsv~SvClSIlSMLSSs~eKqrP~ 134 (161)
T KOG0427|consen 93 YSNGHICLDILYDSWSPAMSVQSVCLSILSMLSSSKEKQRPT 134 (161)
T ss_pred ecCCeEEEEeecccCCcchhhHHHHHHHHHHHccCccccCCC
Confidence 9 899999999999999999984 3333444
No 20
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=4.9e-18 Score=135.56 Aligned_cols=125 Identities=18% Similarity=0.338 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCC--CCCeeeeccccccCCcc--
Q 048648 55 QQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPV--KPPVVPFVSGMFHRNDL-- 124 (182)
Q Consensus 55 ~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~HPnI~-- 124 (182)
..|..|+..+.+...+ +..|-+.|-++|++. .+.|.||+|+|+|.+|++||. +-|+|.|.+.+|||.|.
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr-~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ 100 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVR-KGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPK 100 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEEe-cccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCC
Confidence 4677888888866655 778899999999975 557999999999999999995 46999999999999999
Q ss_pred -----------CCCCcc-cHHHHHHHHHHhhCCCCCCCh-h-hHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 125 -----------KWNSDY-DVVAIFATIQLMLGDPNLYSA-A-NQQAATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 125 -----------~W~p~~-tl~~il~~I~~ll~~p~~~~p-~-n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
.|+-.- .+++||..||..+.+|+.+.+ + |++|+.+|++++++|.++|+++++.+-.
T Consensus 101 skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~ 170 (258)
T KOG0429|consen 101 SKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASRS 170 (258)
T ss_pred ccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 897774 799999999999999998877 4 9999999999999999999999987654
No 21
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.7e-18 Score=140.16 Aligned_cols=91 Identities=19% Similarity=0.455 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccc-------
Q 048648 51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSG------- 117 (182)
Q Consensus 51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~------- 117 (182)
..+.|||++|.++|+ ++.+ -++|++.|+.+|.||.||-|+||+|+.+|.||.+||++||.+-.+|+
T Consensus 10 npaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGRFE~n 88 (314)
T KOG0428|consen 10 NPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGRFEVN 88 (314)
T ss_pred CHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCceeeC
Confidence 467899999999999 4544 88999999999999999999999999999999999999999988876
Q ss_pred --------cccCCccCCCCcccHHHHHHHHHHhhC
Q 048648 118 --------MFHRNDLKWNSDYDVVAIFATIQLMLG 144 (182)
Q Consensus 118 --------i~HPnI~~W~p~~tl~~il~~I~~ll~ 144 (182)
-|||. .|.|+|+++..|++|..+|-
T Consensus 89 kKiCLSISgyHPE--tWqPSWSiRTALlAlIgFmP 121 (314)
T KOG0428|consen 89 KKICLSISGYHPE--TWQPSWSIRTALLALIGFMP 121 (314)
T ss_pred ceEEEEecCCCcc--ccCcchhHHHHHHHHHcccc
Confidence 27888 99999999999999988884
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=6e-15 Score=138.90 Aligned_cols=133 Identities=24% Similarity=0.340 Sum_probs=106.2
Q ss_pred cCCcccchhHHHHHHHhhhhHHHHhhcCCCCcHHH---HHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCC
Q 048648 19 PSHGIINQKLLLEALVLDLLETLVILNVGGGLKCQ---LQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTL 89 (182)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tp 89 (182)
.+=..+.++...+|-|..++....-+...+..... .+..+.|.+-|..+.+. .++.+..+.++|.||+|||
T Consensus 815 ~~~~~~~d~~~~~F~v~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tp 894 (1101)
T KOG0895|consen 815 FSVVSEDDDGSLRFDVNYDYMDHHKNANDGNKAAEAQWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTP 894 (1101)
T ss_pred cccccCCCchhccccccCchHHHhhhhcccccHHHHHHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCc
Confidence 33345556666888888888887777666655443 23334455556655555 8889999999999999999
Q ss_pred CCCCEEEEEEeeCCCCCCCCCeeeeccc--cccCCcc-------------------CCCCcccHHHHHHHHHHhhC--CC
Q 048648 90 FDGGIFKLTLKFTKEYPVKPPVVPFVSG--MFHRNDL-------------------KWNSDYDVVAIFATIQLMLG--DP 146 (182)
Q Consensus 90 Y~gg~f~~~i~fp~~YP~~pP~v~f~t~--i~HPnI~-------------------~W~p~~tl~~il~~I~~ll~--~p 146 (182)
|.+|+|.|+|.||.+||.+||.|.+.+. .++||+| .|+|+.++.++|.+||.|+. +|
T Consensus 895 y~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~p 974 (1101)
T KOG0895|consen 895 YQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNLYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEP 974 (1101)
T ss_pred cccceEEEEeecCCCCCCCCCceEeecCceeeCcccccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhccccc
Confidence 9999999999999999999999999986 5999999 79999999999999999987 45
Q ss_pred CCCCh
Q 048648 147 NLYSA 151 (182)
Q Consensus 147 ~~~~p 151 (182)
..+.|
T Consensus 975 y~ne~ 979 (1101)
T KOG0895|consen 975 YFNEA 979 (1101)
T ss_pred ccCcc
Confidence 55544
No 23
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.1e-12 Score=97.68 Aligned_cols=92 Identities=20% Similarity=0.432 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHcCCCC--------CCCCc--ceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccC
Q 048648 52 CQLQQWMRDLKRLQQGAPP--------GDDDI--MLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHR 121 (182)
Q Consensus 52 ~~~~RL~~El~~l~~~~~~--------~~~~~--~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 121 (182)
++..||.+|+.+-++...+ +.+|+ ..|..+|.||+.|+||+-+|.+.|.+.++||..||+|+|.+++--+
T Consensus 5 Prnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~ 84 (138)
T KOG0896|consen 5 PRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMN 84 (138)
T ss_pred ccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeec
Confidence 3456788888887665555 44454 7899999999999999999999999999999999999999998666
Q ss_pred Ccc---------------CCCCcccHHHHHHHHHHhh
Q 048648 122 NDL---------------KWNSDYDVVAIFATIQLML 143 (182)
Q Consensus 122 nI~---------------~W~p~~tl~~il~~I~~ll 143 (182)
.|. .|+-.++++.+|..++..+
T Consensus 85 gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m 121 (138)
T KOG0896|consen 85 GVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEM 121 (138)
T ss_pred ccccCCCccCccccchhhcccccchhhHHHHhhhHHH
Confidence 655 8999999999999997544
No 24
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=3.2e-11 Score=114.12 Aligned_cols=95 Identities=26% Similarity=0.560 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccc---cccC
Q 048648 51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSG---MFHR 121 (182)
Q Consensus 51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~---i~HP 121 (182)
....+|+++|++.+.++.+. .+.+++..+++|.||.||||++|+|.|+|.||..||..||.|.++|. .+.|
T Consensus 281 ~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nP 360 (1101)
T KOG0895|consen 281 KNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNP 360 (1101)
T ss_pred hhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecC
Confidence 45678999999999999888 88899999999999999999999999999999999999999999987 6999
Q ss_pred Ccc-------------------CCCCc-ccHHHHHHHHHHhhCC
Q 048648 122 NDL-------------------KWNSD-YDVVAIFATIQLMLGD 145 (182)
Q Consensus 122 nI~-------------------~W~p~-~tl~~il~~I~~ll~~ 145 (182)
|.| .|+|. .++.++|.+||.++.+
T Consensus 361 NlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~ 404 (1101)
T KOG0895|consen 361 NLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILN 404 (1101)
T ss_pred CcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcc
Confidence 999 79998 7899999999999874
No 25
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0007 Score=49.51 Aligned_cols=58 Identities=22% Similarity=0.364 Sum_probs=45.4
Q ss_pred EEEEEeeCCCCCCCCCeeeeccccccCCcc------------------CCCCcccHHHHHHHHHHhhCCCC--CCChhhH
Q 048648 95 FKLTLKFTKEYPVKPPVVPFVSGMFHRNDL------------------KWNSDYDVVAIFATIQLMLGDPN--LYSAANQ 154 (182)
Q Consensus 95 f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~------------------~W~p~~tl~~il~~I~~ll~~p~--~~~p~n~ 154 (182)
..+.+.|++|||+.||.+|.. +|.++ +|+.+++++.++++|..++-.-. .+.|++.
T Consensus 13 ill~~~f~~~fp~~ppf~rvv----~p~~~~Gyvl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG~~ri~~~a~k 88 (122)
T KOG0897|consen 13 ILLLDIFDDNFPFMPPFPRVV----KPLEDEGYVLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKGGARIEFPAEK 88 (122)
T ss_pred eEeeeecccCCCCCCCcceee----eecccCCEEecchhhHHHHHccccccchhhHHHHHHHHHHHhhccceeEecCcch
Confidence 467788999999999998755 45555 89999999999999999987543 4455544
Q ss_pred HH
Q 048648 155 QA 156 (182)
Q Consensus 155 ~a 156 (182)
+.
T Consensus 89 ~s 90 (122)
T KOG0897|consen 89 SS 90 (122)
T ss_pred hh
Confidence 43
No 26
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=96.88 E-value=0.0075 Score=44.82 Aligned_cols=67 Identities=16% Similarity=0.360 Sum_probs=43.6
Q ss_pred CcceEEEEEecCCCCCCCCCEEE--EEEeeCCCCCCCCCeeeeccccc-----cCCcc-----------CCCC-cccHHH
Q 048648 74 DIMLRNAIIVGLGGTLFDGGIFK--LTLKFTKEYPVKPPVVPFVSGMF-----HRNDL-----------KWNS-DYDVVA 134 (182)
Q Consensus 74 ~~~~w~~~i~Gp~~tpY~gg~f~--~~i~fp~~YP~~pP~v~f~t~i~-----HPnI~-----------~W~p-~~tl~~ 134 (182)
.+....++|.- .|+|..|. +.|-+|.+||.+||.|....... +.+|+ +|++ ..+|.+
T Consensus 31 ~LL~L~Gtipi----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~~W~~~~s~L~~ 106 (121)
T PF05743_consen 31 LLLCLYGTIPI----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQNWNPPSSNLVD 106 (121)
T ss_dssp EEEEEEEEEEE----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHHT--TTTS-HHH
T ss_pred eEEEEecCccc----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhccCCCCCCCHHH
Confidence 34555555542 48888885 55668999999999997764421 33555 9988 788999
Q ss_pred HHHHHHHhhC
Q 048648 135 IFATIQLMLG 144 (182)
Q Consensus 135 il~~I~~ll~ 144 (182)
++..++..+.
T Consensus 107 lv~~l~~~F~ 116 (121)
T PF05743_consen 107 LVQELQAVFS 116 (121)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHHHHh
Confidence 9999988876
No 27
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=96.82 E-value=0.0036 Score=47.06 Aligned_cols=55 Identities=24% Similarity=0.421 Sum_probs=47.7
Q ss_pred CCCEEEEEEeeCCCCCCCCCeeeecccc---ccCCcc---------------CCCCcccHHHHHHHHHHhhCC
Q 048648 91 DGGIFKLTLKFTKEYPVKPPVVPFVSGM---FHRNDL---------------KWNSDYDVVAIFATIQLMLGD 145 (182)
Q Consensus 91 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~HPnI~---------------~W~p~~tl~~il~~I~~ll~~ 145 (182)
.|+.+.+.|.+|++||..||.|....+. +=|+|+ .|.|.-++.++|.....+|.+
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D~~~P~~~~~~~l~~a~~lL~~ 106 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLDPWDPEGIIADCLERAIRLLED 106 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccCccCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999888544 567777 789999999999999888873
No 28
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=96.38 E-value=0.015 Score=41.36 Aligned_cols=64 Identities=16% Similarity=0.109 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCCCC-----CCCCcceEEEEEe--cCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc
Q 048648 55 QQWMRDLKRLQQGAPP-----GDDDIMLRNAIIV--GLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM 118 (182)
Q Consensus 55 ~RL~~El~~l~~~~~~-----~~~~~~~w~~~i~--Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i 118 (182)
.+...|+..|+.-.+. ...+...+.+.+. ....+.-....+.+.+.||++||..+|.|...+..
T Consensus 4 e~~~~EieaL~sIy~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 4 EQQEEEIEALQSIYPDDFIEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHSSSSESSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHcCCCccccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 4677888888876655 2334455566662 22344445668999999999999999999877653
No 29
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.88 E-value=0.06 Score=37.91 Aligned_cols=47 Identities=15% Similarity=0.322 Sum_probs=34.5
Q ss_pred CCEEEEEEeeCCCCCCCCCeeeeccccccCCccCCCCcccHHHHHHHHHHhhCC
Q 048648 92 GGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKWNSDYDVVAIFATIQLMLGD 145 (182)
Q Consensus 92 gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~W~p~~tl~~il~~I~~ll~~ 145 (182)
...+.+.+.||++||..+|.|.+.+. .|-+......+...+.....+
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~~~-------~~l~~~~~~~l~~~l~~~~~e 86 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLLNS-------EGLSDEQLAELLKKLEEIAEE 86 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEECC-------CCCCHHHHHHHHHHHHHHHHH
Confidence 45589999999999999999988764 355555666666666665543
No 30
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=94.75 E-value=0.011 Score=45.02 Aligned_cols=61 Identities=20% Similarity=0.317 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHcCCCC---CCCCcceEEEEEecCCCCCCCCCE----------EEEEEeeCCCCCCCCCeeee
Q 048648 51 KCQLQQWMRDLKRLQQGAPP---GDDDIMLRNAIIVGLGGTLFDGGI----------FKLTLKFTKEYPVKPPVVPF 114 (182)
Q Consensus 51 ~~~~~RL~~El~~l~~~~~~---~~~~~~~w~~~i~Gp~~tpY~gg~----------f~~~i~fp~~YP~~pP~v~f 114 (182)
..-..||.+|+..|-+.-.. .++|++... .-+.||-|.|.+ |.+++.+|..||..||.+..
T Consensus 23 ~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~le---sn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi~l 96 (161)
T PF08694_consen 23 DLWVQRLKEEYQALIKYVENNKENDNDWFRLE---SNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEIAL 96 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT---EEEE---E-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----B-
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCeEEec---cCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcceec
Confidence 56678999999998764333 444444322 346777777643 56667779999999999864
No 31
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=93.87 E-value=0.39 Score=35.80 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=48.8
Q ss_pred ceEEEEEec--CCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccc-------cCCcc-------------------CCC
Q 048648 76 MLRNAIIVG--LGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMF-------HRNDL-------------------KWN 127 (182)
Q Consensus 76 ~~w~~~i~G--p~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~-------HPnI~-------------------~W~ 127 (182)
..|.+ |.| .+.+.|.+..-.+.|.+|+.||..+|.+.+..+-. .|+-. .|+
T Consensus 24 ~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~ 102 (122)
T PF14462_consen 24 RRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRTWQRWSRHNNPWR 102 (122)
T ss_pred ccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCeeeeeecCCCCCCC
Confidence 34444 555 34556999999999999999999999887775521 23111 799
Q ss_pred Ccc-cHHHHHHHHHHhhC
Q 048648 128 SDY-DVVAIFATIQLMLG 144 (182)
Q Consensus 128 p~~-tl~~il~~I~~ll~ 144 (182)
|.. +|.+.|..|...|.
T Consensus 103 P~~D~l~T~l~~v~~~L~ 120 (122)
T PF14462_consen 103 PGVDDLWTHLARVEHALA 120 (122)
T ss_pred CCCCcHHHHHHHHHHHHh
Confidence 986 58888888876653
No 32
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.50 E-value=0.41 Score=36.04 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=44.5
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCCCCCCcceEEEEEecCCCCCCCCCE----------EEEEEeeCCCCCCCCCeee
Q 048648 48 GGLKCQLQQWMRDLKRLQQGAPPGDDDIMLRNAIIVGLGGTLFDGGI----------FKLTLKFTKEYPVKPPVVP 113 (182)
Q Consensus 48 ~~~~~~~~RL~~El~~l~~~~~~~~~~~~~w~~~i~Gp~~tpY~gg~----------f~~~i~fp~~YP~~pP~v~ 113 (182)
.....-.+||.+|++.|-.....+.++-..|.-+=..+.||-|-|.+ |.+++.+|-.||-..|.+.
T Consensus 23 rd~~~wvqrlkeey~sli~yvqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tapeia 98 (167)
T KOG3357|consen 23 RDGDLWVQRLKEEYQSLIAYVQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEIA 98 (167)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcccc
Confidence 33345678999999998764333333333444444568888888854 5556667999999999874
No 33
>PF14457 Prok-E2_A: Prokaryotic E2 family A
Probab=90.44 E-value=0.39 Score=37.47 Aligned_cols=50 Identities=18% Similarity=0.411 Sum_probs=40.8
Q ss_pred EEEEeeCCCCCCCCCeeeeccccc---cCCcc------------------CCCCcccHHHHHHHHHHhhCC
Q 048648 96 KLTLKFTKEYPVKPPVVPFVSGMF---HRNDL------------------KWNSDYDVVAIFATIQLMLGD 145 (182)
Q Consensus 96 ~~~i~fp~~YP~~pP~v~f~t~i~---HPnI~------------------~W~p~~tl~~il~~I~~ll~~ 145 (182)
.+.|.|+.+||..+|.|.+..+.| +|++. +|.++.++..+|..|...|.+
T Consensus 56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~e~~~~~g~~~~l~rl~~Wl~~ 126 (162)
T PF14457_consen 56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWSEWRPSWGPEGFLDRLFDWLRD 126 (162)
T ss_pred eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHHHhhhccCHHHHHHHHHHHHHH
Confidence 456889999999999988887655 35555 789999999999999988853
No 34
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.99 E-value=1.8 Score=37.58 Aligned_cols=91 Identities=14% Similarity=0.296 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHcCCCC---------CCCCcceEEEEEecCCCCCCCCCEEEE--EEeeCCCCCCCCCeeeecccc--
Q 048648 52 CQLQQWMRDLKRLQQGAPP---------GDDDIMLRNAIIVGLGGTLFDGGIFKL--TLKFTKEYPVKPPVVPFVSGM-- 118 (182)
Q Consensus 52 ~~~~RL~~El~~l~~~~~~---------~~~~~~~w~~~i~Gp~~tpY~gg~f~~--~i~fp~~YP~~pP~v~f~t~i-- 118 (182)
.+.+.+...+.......+. ...+++...++|. .+|.|.+|.+ .|-+.+.||..||.|.....-
T Consensus 20 ~~~~~~l~lls~~~sL~P~t~tf~~~Dg~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M 95 (365)
T KOG2391|consen 20 LTRQDLLNLLSSFKSLRPKTDTFTHNDGRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTM 95 (365)
T ss_pred hHHHHHHHHHHhccccCcccceEEecCCCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchh
Confidence 3344555555555554444 2234455556663 3688888765 455799999999998665431
Q ss_pred ---ccCCcc-----------CCCCc-ccHHHHHHHHHHhhCCC
Q 048648 119 ---FHRNDL-----------KWNSD-YDVVAIFATIQLMLGDP 146 (182)
Q Consensus 119 ---~HPnI~-----------~W~p~-~tl~~il~~I~~ll~~p 146 (182)
-|-+|+ .|.|. ++|..++..+.+.+.++
T Consensus 96 ~ik~~~hVd~nG~V~LPYLh~W~~pssdLv~Liq~l~a~f~~~ 138 (365)
T KOG2391|consen 96 IIKVHEHVDPNGKVYLPYLHNWDPPSSDLVGLIQELIAAFSED 138 (365)
T ss_pred hhHHhhccCCCCeEechhhccCCCccchHHHHHHHHHHHhcCC
Confidence 366677 99765 68999998888888753
No 35
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=89.90 E-value=0.56 Score=40.00 Aligned_cols=83 Identities=18% Similarity=0.316 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHcCCCC-C--CCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc-ccCCccCCC
Q 048648 52 CQLQQWMRDLKRLQQGAPP-G--DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM-FHRNDLKWN 127 (182)
Q Consensus 52 ~~~~RL~~El~~l~~~~~~-~--~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnI~~W~ 127 (182)
....+|.+|+.++..+... . +++....++.+.. + +....++|.++.+||..+|.+..--++ +.. .|.
T Consensus 99 ~~ys~ll~EIe~IGW~kl~~i~~d~~ls~i~l~~~D---~---~R~H~l~l~l~~~yp~~~p~~~~~~P~~~~~---~w~ 169 (291)
T PF09765_consen 99 QYYSNLLKEIEAIGWDKLVQIQFDDDLSTIKLKIFD---S---SRQHYLELKLPSNYPFEPPSCSLDLPIPFSL---SWS 169 (291)
T ss_dssp GGC-CHHHHHHHHHCGCCEEEEE-CCCSEEEEEEET---T---CEEEEEEEETTTTTTTSEEEECS-TTS-HHH---HHH
T ss_pred HHHHHHHHHHHHhccccceEEecCCCccEEEEEEEc---C---CceEEEEEEECCCCCCCCceeeCCCCcchhh---hhc
Confidence 3457899999999987766 4 8889999998873 2 256788999999999999986544433 111 688
Q ss_pred C-cccHHHHHHHHHHhh
Q 048648 128 S-DYDVVAIFATIQLML 143 (182)
Q Consensus 128 p-~~tl~~il~~I~~ll 143 (182)
+ ..++.+++...+..|
T Consensus 170 ~~~ssL~~v~~qF~~~l 186 (291)
T PF09765_consen 170 PSQSSLKDVVQQFQEAL 186 (291)
T ss_dssp CHT-SHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHH
Confidence 8 667777766655554
No 36
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=84.93 E-value=11 Score=32.78 Aligned_cols=49 Identities=22% Similarity=0.395 Sum_probs=40.1
Q ss_pred cceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeec-cccccCCcc------CCCCc
Q 048648 75 IMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFV-SGMFHRNDL------KWNSD 129 (182)
Q Consensus 75 ~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~-t~i~HPnI~------~W~p~ 129 (182)
-+.+++.| ||.|...+-+|.|...||..||-+.|. ..-|+|... +|++.
T Consensus 53 ~DRF~l~I------Py~~~~l~W~viFd~~~p~~pPDfiF~eD~~F~pd~s~l~~L~~Wd~~ 108 (333)
T PF06113_consen 53 CDRFKLLI------PYCGEYLKWDVIFDAQYPEFPPDFIFGEDDNFLPDPSKLPSLVNWDPS 108 (333)
T ss_pred cceEEEEe------eccCCEEEEEEEEcCCCCCCCCCEEeCCCcCcCCChhhcchhhcCCCC
Confidence 45666666 599999999999999999999999997 445899755 78776
No 37
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=84.19 E-value=5.6 Score=32.38 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCCC-----CCCCcceEEEEEecCCCC--CCCCCEEEEEEeeCCCCCCCCCee
Q 048648 57 WMRDLKRLQQGAPP-----GDDDIMLRNAIIVGLGGT--LFDGGIFKLTLKFTKEYPVKPPVV 112 (182)
Q Consensus 57 L~~El~~l~~~~~~-----~~~~~~~w~~~i~Gp~~t--pY~gg~f~~~i~fp~~YP~~pP~v 112 (182)
..+|+..|....+. ...++..+.+.|.--.|. -|.| .+.+.+.++++||..+|.+
T Consensus 7 Qe~E~EaLeSIY~de~~~i~~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli 68 (215)
T KOG4018|consen 7 QEEELEALESIYPDEFKHINSEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLI 68 (215)
T ss_pred HHHHHHHHHHhccchhhhhhccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcce
Confidence 34566666665555 334444477777632222 2223 7899999999999999998
No 38
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=74.62 E-value=11 Score=36.49 Aligned_cols=65 Identities=17% Similarity=0.171 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHcCCCC---CCCC--cceEEEEEecCCCCCCCCCEE-EEEEeeCCCCCCC-CCeeeeccc
Q 048648 52 CQLQQWMRDLKRLQQGAPP---GDDD--IMLRNAIIVGLGGTLFDGGIF-KLTLKFTKEYPVK-PPVVPFVSG 117 (182)
Q Consensus 52 ~~~~RL~~El~~l~~~~~~---~~~~--~~~w~~~i~Gp~~tpY~gg~f-~~~i~fp~~YP~~-pP~v~f~t~ 117 (182)
...+-|.+|+.-+...-.. .+-| -+.-.+.+-||-.. -+|-+| ++.|.||.+||.+ +|+++|..+
T Consensus 420 ~~pQnLgeE~S~Ig~k~~nV~fEkidva~Rsctvsln~p~~~-~d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 420 TLPQNLGEEFSLIGVKIRNVNFEKIDVADRSCTVSLNCPNHR-VDDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhhHHhHHhHhhccccccceEeeccccceEEEEecCCCCc-cccceeEEEEEeccccCCCCCCCceEEecC
Confidence 3455677777766654443 1122 24455666665433 355555 8889999999997 689998855
No 39
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=52.07 E-value=9 Score=21.46 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=18.1
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHHH
Q 048648 41 LVILNVGGGLKCQLQQWMRDLKRL 64 (182)
Q Consensus 41 ~~~~~~~~~~~~~~~RL~~El~~l 64 (182)
+++.++++.++...++|.+|+...
T Consensus 6 qI~ISTnG~sP~la~~iR~~ie~~ 29 (30)
T PF14824_consen 6 QIAISTNGKSPRLARLIRKEIERL 29 (30)
T ss_dssp EEEEEESSS-HHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHHHh
Confidence 346678888888889999998764
No 40
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=37.92 E-value=40 Score=25.45 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=21.8
Q ss_pred CCEEEEEEeeCCCCC-CCCCeeeec
Q 048648 92 GGIFKLTLKFTKEYP-VKPPVVPFV 115 (182)
Q Consensus 92 gg~f~~~i~fp~~YP-~~pP~v~f~ 115 (182)
.|.|.|.-.+|..|| ..||-|.|.
T Consensus 65 ~G~y~f~ti~Pg~Y~~~R~~HiH~~ 89 (146)
T cd00421 65 DGRYRFRTIKPGPYPIGRPPHIHFK 89 (146)
T ss_pred CcCEEEEEEcCCCCCCCCCCEEEEE
Confidence 588999999999999 999988876
No 41
>smart00340 HALZ homeobox associated leucin zipper.
Probab=36.65 E-value=30 Score=20.93 Aligned_cols=17 Identities=6% Similarity=0.132 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHcCC
Q 048648 52 CQLQQWMRDLKRLQQGA 68 (182)
Q Consensus 52 ~~~~RL~~El~~l~~~~ 68 (182)
.-.+||++|+++|....
T Consensus 19 eeNrRL~ke~~eLralk 35 (44)
T smart00340 19 EENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 34689999999998654
No 42
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=30.73 E-value=59 Score=25.85 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=22.8
Q ss_pred CCCEEEEEEeeCCCCCCCCCeeeecc
Q 048648 91 DGGIFKLTLKFTKEYPVKPPVVPFVS 116 (182)
Q Consensus 91 ~gg~f~~~i~fp~~YP~~pP~v~f~t 116 (182)
+.|.|.|+-.+|--||..||=|.|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 35899999999999999999888763
No 43
>PF14135 DUF4302: Domain of unknown function (DUF4302)
Probab=26.73 E-value=3.3e+02 Score=22.09 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCC
Q 048648 53 QLQQWMRDLKRLQQGAPPGDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEY 105 (182)
Q Consensus 53 ~~~RL~~El~~l~~~~~~~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~Y 105 (182)
+..||.+.++++++... +...-|.+.+....+.-| || |.|.++|.++=
T Consensus 10 ~~eR~~e~~~~~k~~L~---~a~~GW~~~yyp~~~~~~-GG-y~f~~kF~~~~ 57 (235)
T PF14135_consen 10 PAERINEALAEYKKILT---SAPNGWKLEYYPKTDQSY-GG-YTFLMKFDDDG 57 (235)
T ss_pred HHHHHHHHHHHHHHHHh---cCCCceEEEEECCCCccC-Cc-EEEEEEECCCC
Confidence 34677776666665442 222449999983333334 55 88888886553
No 44
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=26.56 E-value=1.9e+02 Score=19.05 Aligned_cols=43 Identities=9% Similarity=0.018 Sum_probs=29.7
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 138 TIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 138 ~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
.|+.|+..-++...++.++..++.+=.+.|...+-..+.+.|+
T Consensus 4 ~l~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAK 46 (68)
T PF03847_consen 4 KLQELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAK 46 (68)
T ss_dssp HHHHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777777777889999888888788888888777776664
No 45
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=25.51 E-value=1.1e+02 Score=22.13 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCCCcceEEEEEecCCCC
Q 048648 50 LKCQLQQWMRDLKRLQQGAPPGDDDIMLRNAIIVGLGGT 88 (182)
Q Consensus 50 ~~~~~~RL~~El~~l~~~~~~~~~~~~~w~~~i~Gp~~t 88 (182)
.+.+++|+.++++.+..... -+.|.|++||
T Consensus 3 ~S~~~~~l~~~l~~~a~~~~---------pvli~GE~Gt 32 (138)
T PF14532_consen 3 KSPAMRRLRRQLERLAKSSS---------PVLITGEPGT 32 (138)
T ss_dssp SCHHHHHHHHHHHHHHCSSS----------EEEECCTTS
T ss_pred CCHHHHHHHHHHHHHhCCCC---------cEEEEcCCCC
Confidence 35677999999999987543 2678888887
No 46
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=25.36 E-value=86 Score=24.17 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=21.8
Q ss_pred CCEEEEEEeeCCCCC-----CCCCeeeecc
Q 048648 92 GGIFKLTLKFTKEYP-----VKPPVVPFVS 116 (182)
Q Consensus 92 gg~f~~~i~fp~~YP-----~~pP~v~f~t 116 (182)
.|.|.|.-.+|.-|| ..||-|.|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 488999999999999 8999888763
No 47
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=25.27 E-value=1.7e+02 Score=19.20 Aligned_cols=43 Identities=12% Similarity=0.014 Sum_probs=31.7
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 138 TIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 138 ~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
.|+.|+..-++...+..+|...+.+=-+.|...+-..+.+.|+
T Consensus 6 ~l~~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAk 48 (72)
T cd07981 6 KLQELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAK 48 (72)
T ss_pred HHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556665545556788889888888888888888777777665
No 48
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=25.04 E-value=55 Score=22.35 Aligned_cols=13 Identities=46% Similarity=0.669 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 048648 52 CQLQQWMRDLKRL 64 (182)
Q Consensus 52 ~~~~RL~~El~~l 64 (182)
..+|||++|++-|
T Consensus 59 SQLKRiQRdlrGL 71 (76)
T PF08203_consen 59 SQLKRIQRDLRGL 71 (76)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHhhCCC
Confidence 6689999999876
No 49
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=23.81 E-value=67 Score=20.66 Aligned_cols=19 Identities=11% Similarity=0.291 Sum_probs=12.0
Q ss_pred CCCCcccHHHHHHHHHHhh
Q 048648 125 KWNSDYDVVAIFATIQLML 143 (182)
Q Consensus 125 ~W~p~~tl~~il~~I~~ll 143 (182)
+|.|.++|++++.......
T Consensus 37 gW~p~~~L~~~i~~~w~W~ 55 (62)
T PF13950_consen 37 GWKPKYSLEDMIRDAWNWQ 55 (62)
T ss_dssp ----SSSHHHHHHHHHHHH
T ss_pred CCCcCCCHHHHHHHHHHHH
Confidence 8999999999998865543
No 50
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=23.52 E-value=90 Score=27.06 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.9
Q ss_pred CEEEEEEeeCCCCCCCCCeeeecccc
Q 048648 93 GIFKLTLKFTKEYPVKPPVVPFVSGM 118 (182)
Q Consensus 93 g~f~~~i~fp~~YP~~pP~v~f~t~i 118 (182)
-.+.+.+..++.||...|+|+...+.
T Consensus 45 vcvtl~m~vs~gYP~esPtvtl~nPR 70 (368)
T KOG4445|consen 45 VCVTLEMTVSEGYPAESPTVTLSNPR 70 (368)
T ss_pred EEEEEEEecCCCCCCcCCceEecCCC
Confidence 56888999999999999999988763
No 51
>PHA02931 hypothetical protein; Provisional
Probab=22.23 E-value=63 Score=20.85 Aligned_cols=27 Identities=19% Similarity=0.423 Sum_probs=20.7
Q ss_pred ceeeeeecCCcccchhHHHHHHHhhhh
Q 048648 12 YKISQIHPSHGIINQKLLLEALVLDLL 38 (182)
Q Consensus 12 ~k~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (182)
+-+..+|+.||.-|.|.+.+-+...-+
T Consensus 36 lpvdevhanhgfdcvemideniinenl 62 (72)
T PHA02931 36 LPVDEVHANHGFDCVEMIDENIINENL 62 (72)
T ss_pred cchhhhhhccCccHHHHHhHHHHHHHH
Confidence 456678999999999999886654443
No 52
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=22.12 E-value=1.1e+02 Score=28.50 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=25.0
Q ss_pred hHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 153 NQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 153 n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
-.++.++..+|+++|.+.+++...++...
T Consensus 271 ~eea~~l~~~dp~~~~~~v~~Sl~rhv~A 299 (546)
T PF01175_consen 271 FEEANELRAEDPEEFKERVQESLARHVEA 299 (546)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 37888888899999999999999987654
No 53
>PF04881 Adeno_GP19K: Adenovirus GP19K; InterPro: IPR006965 This 19 kDa glycoprotein binds the major histocompatibility (MHC) class I antigens in the endoplasmic reticulum (ER). The ER retention signal at the C terminus of Gp19K causes retention of the complex in the ER, preventing lysis of the cell by cytotoxic T-lymphocytes [].; GO: 0005537 mannose binding, 0050690 regulation of defense response to virus by virus
Probab=21.19 E-value=91 Score=23.54 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=21.1
Q ss_pred CCCCcceEEEEEecCCCCCCC-CCEEEEEEee
Q 048648 71 GDDDIMLRNAIIVGLGGTLFD-GGIFKLTLKF 101 (182)
Q Consensus 71 ~~~~~~~w~~~i~Gp~~tpY~-gg~f~~~i~f 101 (182)
...|...|.|++.|++||+.. +..|-+.+.|
T Consensus 43 qPGd~~~ytVtV~G~dGs~~~~n~tf~~~FiF 74 (139)
T PF04881_consen 43 QPGDPEWYTVTVQGPDGSIRKSNNTFMYKFIF 74 (139)
T ss_pred cCCCCcceEEEEECCCCcceeccccchheeeH
Confidence 556788899999999988764 3444443333
No 54
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=20.85 E-value=1e+02 Score=26.90 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=20.2
Q ss_pred CEEEEEEeeCCCCCCCCCeeeecc
Q 048648 93 GIFKLTLKFTKEYPVKPPVVPFVS 116 (182)
Q Consensus 93 g~f~~~i~fp~~YP~~pP~v~f~t 116 (182)
=.|-+.|.+|..||...|.++|.+
T Consensus 306 F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 306 FTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred eEEEEEEeccCCCCCcCCeEEEEe
Confidence 347777888999999999999875
No 55
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=20.84 E-value=1e+02 Score=25.99 Aligned_cols=29 Identities=10% Similarity=0.059 Sum_probs=25.8
Q ss_pred hhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 152 ANQQAATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 152 ~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
.+.+|+..|.+|++.|...+.+.+++.+.
T Consensus 239 ~s~~aa~~F~~~P~~yi~~v~~~ar~~pe 267 (281)
T PF12018_consen 239 SSREAAYRFAEDPERYIQAVLEKARKNPE 267 (281)
T ss_pred CCHHHHHHHHHCHHHHHHHHHHHHhhCHH
Confidence 57899999999999999999999988654
No 56
>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []. This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.75 E-value=2.1e+02 Score=19.66 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=28.9
Q ss_pred CcccchhHHHHHHHhhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHcCCC
Q 048648 21 HGIINQKLLLEALVLDLLETLVILNVGGGLKCQLQQWMRDLKRLQQGAP 69 (182)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RL~~El~~l~~~~~ 69 (182)
+|.=+.+.+.+.-...+++-..+..+++.+-. .+||+|-+.++..++.
T Consensus 31 ~GgDDvqQL~~~~e~eF~eim~lvGM~sKPLH-VrRlqKAL~ew~~~p~ 78 (82)
T PF04904_consen 31 QGGDDVQQLCEAGEEEFLEIMALVGMASKPLH-VRRLQKALQEWSTNPH 78 (82)
T ss_pred HcChhHHHHHhcChHHHHHHHHHhCccCccHH-HHHHHHHHHHHhcChh
Confidence 34444444444333344444555555555544 5999999999988764
No 57
>PRK05414 urocanate hydratase; Provisional
Probab=20.54 E-value=1.2e+02 Score=28.12 Aligned_cols=29 Identities=17% Similarity=0.154 Sum_probs=25.3
Q ss_pred hHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 153 NQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 153 n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
-.++.++.++|++.|.+.|++...++...
T Consensus 281 ~ee~~~lr~~dp~~~~~~~~~Sm~rhv~A 309 (556)
T PRK05414 281 LEEAAELRAEDPEEFVKAAKASMARHVEA 309 (556)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 37888888999999999999999987654
No 58
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=20.36 E-value=1.2e+02 Score=27.98 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=25.1
Q ss_pred hHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 153 NQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 153 n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
-.++.++.++|+++|.+.|++...++...
T Consensus 272 ~ee~~~lr~~dp~~~~~~~~~Sm~rhv~A 300 (545)
T TIGR01228 272 VEDADKLRQEEPEAYVKAAKQSMAKHVRA 300 (545)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 37888888999999999999999887654
No 59
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=20.12 E-value=35 Score=33.27 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=0.0
Q ss_pred CEEEEEEeeCCCCCCCCCeeeeccc
Q 048648 93 GIFKLTLKFTKEYPVKPPVVPFVSG 117 (182)
Q Consensus 93 g~f~~~i~fp~~YP~~pP~v~f~t~ 117 (182)
.+=-++|.+|.|||..+|.+.+.+.
T Consensus 714 ~VPPl~l~vP~~YP~~sp~~~~~~~ 738 (799)
T PF09606_consen 714 SVPPLRLTVPADYPRQSPQCSVDRD 738 (799)
T ss_dssp -------------------------
T ss_pred CCCCeeEeCCCCCCccCCcCcccHH
Confidence 4456778899999999998876444
Done!