Query 048648
Match_columns 182
No_of_seqs 146 out of 1191
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 20:17:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpr_A Ubiquitin-conjugating e 100.0 1.2E-42 4.2E-47 266.9 16.9 132 50-181 2-151 (151)
2 1zdn_A Ubiquitin-conjugating e 100.0 1.5E-42 5.1E-47 268.3 16.5 135 45-179 6-158 (158)
3 2c2v_B Ubiquitin-conjugating e 100.0 1.3E-42 4.4E-47 267.7 14.0 130 52-181 5-152 (154)
4 1ayz_A UBC2, ubiquitin-conjuga 100.0 4.4E-42 1.5E-46 268.4 16.0 131 51-181 3-151 (169)
5 1z2u_A Ubiquitin-conjugating e 100.0 4.2E-42 1.5E-46 263.6 15.2 130 51-180 3-150 (150)
6 2c4o_A Ubiquitin-conjugating e 100.0 8.5E-42 2.9E-46 265.8 17.0 132 49-180 16-165 (165)
7 2aak_A UBC1, ubiquitin conjuga 100.0 5.6E-42 1.9E-46 263.4 15.7 131 51-181 3-151 (152)
8 2ayv_A Ubiquitin-conjugating e 100.0 6.9E-42 2.4E-46 266.6 16.4 129 51-179 20-166 (166)
9 1yh2_A HSPC150 protein similar 100.0 1.5E-41 5.1E-46 265.4 17.0 132 50-181 2-155 (169)
10 3rcz_B SUMO-conjugating enzyme 100.0 7.3E-42 2.5E-46 265.7 14.7 133 48-180 6-163 (163)
11 2e2c_A Ubiquitin conjugating e 100.0 1.7E-41 5.9E-46 261.8 16.2 133 48-181 5-155 (156)
12 2bep_A Ubiquitin-conjugating e 100.0 2.5E-41 8.6E-46 261.6 16.5 132 49-180 5-158 (159)
13 1fxt_A Ubiquitin-conjugating e 100.0 7.5E-42 2.6E-46 262.0 13.4 128 53-180 2-149 (149)
14 2r0j_A Ubiquitin carrier prote 100.0 1.2E-41 4.1E-46 260.9 14.3 128 54-181 3-148 (149)
15 3h8k_A Ubiquitin-conjugating e 100.0 3.1E-41 1.1E-45 262.2 16.8 130 51-180 2-163 (164)
16 2f4z_A Tgtwinscan_2721 - E2 do 100.0 1.4E-41 4.7E-46 270.6 14.6 135 47-181 27-193 (193)
17 2ucz_A UBC7, ubiquitin conjuga 100.0 3.2E-41 1.1E-45 262.5 16.3 131 50-180 2-164 (165)
18 1jat_A Ubiquitin-conjugating e 100.0 4.8E-42 1.6E-46 264.7 11.2 130 52-181 5-152 (155)
19 2pwq_A Ubiquitin conjugating e 100.0 3.4E-41 1.2E-45 272.4 16.1 132 49-180 20-170 (216)
20 2gjd_A Ubiquitin-conjugating e 100.0 4.2E-41 1.4E-45 259.9 15.1 130 51-180 3-157 (157)
21 2grr_A Ubiquitin-conjugating e 100.0 5.3E-41 1.8E-45 260.4 15.4 133 49-181 4-161 (161)
22 3k9o_A Ubiquitin-conjugating e 100.0 7.8E-41 2.7E-45 267.8 15.9 133 49-181 2-156 (201)
23 3bzh_A Ubiquitin-conjugating e 100.0 1.1E-40 3.6E-45 265.7 15.2 130 51-180 47-194 (194)
24 3fn1_B NEDD8-conjugating enzym 100.0 2.8E-40 9.6E-45 257.6 15.9 134 46-180 8-167 (167)
25 1wzv_A Ubiquitin-conjugating e 100.0 1.9E-40 6.6E-45 255.6 14.2 129 52-181 4-152 (155)
26 2onu_A Ubiquitin-conjugating e 100.0 7.7E-41 2.6E-45 257.3 10.8 129 53-181 3-148 (152)
27 1i7k_A Ubiquitin-conjugating e 100.0 2.6E-40 9E-45 260.4 12.8 131 49-180 27-175 (179)
28 3e46_A Ubiquitin-conjugating e 100.0 1.1E-39 3.7E-44 269.0 17.0 133 49-181 54-208 (253)
29 3rz3_A Ubiquitin-conjugating e 100.0 5.9E-40 2E-44 259.3 14.7 133 49-181 4-174 (183)
30 1yrv_A Ubiquitin-conjugating l 100.0 6.8E-40 2.3E-44 256.0 14.5 129 48-177 19-168 (169)
31 2z5d_A Ubiquitin-conjugating e 100.0 3.9E-40 1.3E-44 259.4 12.6 129 52-180 25-169 (179)
32 2y9m_A Ubiquitin-conjugating e 100.0 1.5E-39 5.1E-44 254.7 15.6 132 49-180 3-168 (172)
33 1yf9_A Ubiquitin carrier prote 100.0 5.5E-40 1.9E-44 257.0 12.8 129 52-180 12-156 (171)
34 1tte_A Ubiquitin-conjugating e 100.0 2.2E-40 7.5E-45 267.5 10.6 129 53-181 3-151 (215)
35 2awf_A Ubiquitin-conjugating e 100.0 9.1E-40 3.1E-44 255.9 12.4 129 46-174 11-172 (172)
36 1c4z_D UBCH7, ubiquitin conjug 100.0 6.3E-40 2.2E-44 252.5 8.2 128 53-181 3-150 (154)
37 1y8x_A Ubiquitin-conjugating e 100.0 1.9E-38 6.5E-43 245.8 15.0 127 50-177 4-147 (160)
38 2nvu_C NEDD8-conjugating enzym 100.0 7.6E-38 2.6E-42 246.6 14.7 129 48-178 22-168 (180)
39 4ddg_A Ubiquitin-conjugating e 100.0 1.1E-37 3.8E-42 272.1 15.9 131 51-181 2-150 (399)
40 3o2u_A NEDD8-conjugating enzym 100.0 9.3E-37 3.2E-41 242.3 15.4 132 45-178 22-177 (190)
41 4ds2_A Ubiquitin-conjugating e 100.0 2.5E-36 8.6E-41 235.3 10.2 125 49-173 5-164 (167)
42 2q0v_A Ubiquitin-conjugating e 100.0 8.5E-36 2.9E-40 230.0 9.7 116 48-163 17-156 (156)
43 3ceg_A Baculoviral IAP repeat- 100.0 4.7E-35 1.6E-39 248.1 14.2 146 35-180 59-243 (323)
44 2a4d_A Ubiquitin-conjugating e 100.0 3.8E-34 1.3E-38 221.5 12.2 117 41-157 14-156 (160)
45 1jat_B Ubiquitin-conjugating e 100.0 4.4E-35 1.5E-39 221.8 6.0 110 51-160 5-138 (138)
46 2fo3_A Ubiquitin-conjugating e 100.0 1.3E-32 4.6E-37 204.9 11.7 100 51-150 5-123 (125)
47 2h2y_A Ubiquitin-conjugating e 100.0 6.6E-32 2.3E-36 203.9 13.5 100 49-148 17-135 (136)
48 2hlw_A Ubiquitin-conjugating e 100.0 9.6E-33 3.3E-37 215.6 7.9 107 51-157 34-166 (170)
49 2a7l_A Hypothetical ubiquitin- 100.0 4E-30 1.4E-34 194.1 12.5 90 55-144 25-136 (136)
50 1zuo_A Hypothetical protein LO 100.0 2.7E-31 9.1E-36 210.2 2.4 129 45-181 20-183 (186)
51 2f4w_A Ubiquitin-conjugating e 100.0 3.8E-29 1.3E-33 198.0 12.5 102 48-151 10-132 (187)
52 2z6o_A UFM1-conjugating enzyme 99.8 8E-22 2.7E-26 151.7 2.6 103 51-161 31-160 (172)
53 3r3q_A Suppressor protein STP2 99.6 1.4E-14 4.9E-19 111.7 9.4 96 55-150 31-161 (162)
54 3kpa_A Probable ubiquitin fold 99.4 3.6E-14 1.2E-18 107.1 -0.1 81 51-131 33-133 (168)
55 3obq_A Tumor susceptibility ge 99.1 7.8E-10 2.7E-14 83.8 9.4 83 57-144 25-137 (146)
56 2ebm_A RWD domain-containing p 97.1 0.0037 1.3E-07 45.2 8.8 84 53-143 11-98 (128)
57 2yz0_A Serine/threonine-protei 96.4 0.08 2.7E-06 38.5 11.8 84 51-142 9-104 (138)
58 2day_A Ring finger protein 25; 96.1 0.024 8E-07 40.8 7.5 82 55-143 11-102 (128)
59 3zqs_A E3 ubiquitin-protein li 95.7 0.045 1.5E-06 42.6 8.0 80 56-143 5-86 (186)
60 2daw_A RWD domain containing p 95.1 0.5 1.7E-05 35.1 12.0 45 94-146 76-120 (154)
61 1ukx_A GCN2, GCN2 EIF2alpha ki 95.0 0.2 6.9E-06 36.1 9.2 83 52-142 10-105 (137)
62 2ebk_A RWD domain-containing p 93.6 0.36 1.2E-05 34.5 8.0 79 56-143 11-98 (128)
63 2dax_A Protein C21ORF6; RWD do 92.3 0.35 1.2E-05 35.7 6.4 24 94-117 74-97 (152)
64 2cwb_A Chimera of immunoglobul 77.7 0.46 1.6E-05 33.7 0.0 33 147-179 22-54 (108)
65 3zqs_A E3 ubiquitin-protein li 51.6 9.8 0.00034 29.3 2.8 48 93-140 124-180 (186)
66 3k1l_B Fancl; UBC, ring, RWD, 30.8 25 0.00086 29.9 2.3 55 94-148 229-293 (381)
67 2rp4_A Transcription factor P5 24.3 1.5E+02 0.0051 19.1 5.6 22 75-103 9-30 (76)
No 1
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}
Probab=100.00 E-value=1.2e-42 Score=266.90 Aligned_cols=132 Identities=24% Similarity=0.487 Sum_probs=126.9
Q ss_pred cHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCc
Q 048648 50 LKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRND 123 (182)
Q Consensus 50 ~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI 123 (182)
+..+.+||++|+++++++++. .++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||
T Consensus 2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv 81 (151)
T 4gpr_A 2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI 81 (151)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceE
Confidence 457789999999999998776 67899999999999999999999999999999999999999999999999999
Q ss_pred c------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 124 L------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 124 ~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
+ +|+|++|+++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 82 ~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p 151 (151)
T 4gpr_A 82 NKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP 151 (151)
T ss_dssp CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 9 899999999999999999999999999999999999999999999999999999963
No 2
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-42 Score=268.34 Aligned_cols=135 Identities=26% Similarity=0.460 Sum_probs=128.0
Q ss_pred cCCCCcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc
Q 048648 45 NVGGGLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM 118 (182)
Q Consensus 45 ~~~~~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i 118 (182)
+...++..+.+||++|+++|+++++. +++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++
T Consensus 6 ~~~~~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i 85 (158)
T 1zdn_A 6 NVENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKI 85 (158)
T ss_dssp --CCSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred cccccCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCc
Confidence 44556778899999999999998776 788999999999999999999999999999999999999999999999
Q ss_pred ccCCcc------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHh
Q 048648 119 FHRNDL------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSW 179 (182)
Q Consensus 119 ~HPnI~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a 179 (182)
|||||+ +|+|++++++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus 86 ~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A 158 (158)
T 1zdn_A 86 FHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG 158 (158)
T ss_dssp CCTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 999998 8999999999999999999999999999999999999999999999999999997
No 3
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-42 Score=267.67 Aligned_cols=130 Identities=23% Similarity=0.407 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-
Q 048648 52 CQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL- 124 (182)
Q Consensus 52 ~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~- 124 (182)
.+.+||++|+++|+++++. .++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|++|||||+
T Consensus 5 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 84 (154)
T 2c2v_B 5 GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK 84 (154)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCcc
Confidence 4569999999999998766 778999999999999999999999999999999999999999999999999998
Q ss_pred -----------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 125 -----------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 125 -----------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
+|+|++|+++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 85 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~ 152 (154)
T 2c2v_B 85 LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN 152 (154)
T ss_dssp TCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence 899999999999999999999999999999999999999999999999999999963
No 4
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=4.4e-42 Score=268.39 Aligned_cols=131 Identities=42% Similarity=0.763 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648 51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL 124 (182)
Q Consensus 51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~ 124 (182)
..+.+||++|+++|+++++. .++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus 3 ~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~ 82 (169)
T 1ayz_A 3 TPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVY 82 (169)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCCC
Confidence 35789999999999998776 678999999999999999999999999999999999999999999999999999
Q ss_pred ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
.|+|+++|++||.+|++||.+|++++|+|.+||.+|++|+++|.++||+|+++||+.
T Consensus 83 ~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~~ 151 (169)
T 1ayz_A 83 ANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWED 151 (169)
T ss_dssp TTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcCC
Confidence 799999999999999999999999999999999999999999999999999999964
No 5
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Probab=100.00 E-value=4.2e-42 Score=263.60 Aligned_cols=130 Identities=26% Similarity=0.478 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648 51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL 124 (182)
Q Consensus 51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~ 124 (182)
..+.+||++|+++|+++++. .++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus 3 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 82 (150)
T 1z2u_A 3 HMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 82 (150)
T ss_dssp CHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCC
Confidence 45679999999999998766 668999999999999999999999999999999999999999999999999998
Q ss_pred ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
+|+|++|+++||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+++||+
T Consensus 83 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~ 150 (150)
T 1z2u_A 83 SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 150 (150)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 79999999999999999999999999999999999999999999999999999985
No 6
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Probab=100.00 E-value=8.5e-42 Score=265.84 Aligned_cols=132 Identities=26% Similarity=0.467 Sum_probs=126.5
Q ss_pred CcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCC
Q 048648 49 GLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN 122 (182)
Q Consensus 49 ~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 122 (182)
..+.+.+||++|+++|+++++. .++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+|||||
T Consensus 16 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPn 95 (165)
T 2c4o_A 16 RGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN 95 (165)
T ss_dssp CCHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTT
T ss_pred CCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCc
Confidence 4466889999999999998766 6789999999999999999999999999999999999999999999999999
Q ss_pred cc------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 123 DL------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 123 I~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
|+ +|+|++||++||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+++||+
T Consensus 96 V~~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~ 165 (165)
T 2c4o_A 96 INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 165 (165)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred CCCCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98 79999999999999999999999999999999999999999999999999999985
No 7
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Probab=100.00 E-value=5.6e-42 Score=263.45 Aligned_cols=131 Identities=48% Similarity=0.807 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648 51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL 124 (182)
Q Consensus 51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~ 124 (182)
..+.+||++|+++|+++++. .++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|++|||||+
T Consensus 3 ~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 82 (152)
T 2aak_A 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIY 82 (152)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCC
Confidence 46789999999999998776 678999999999999999999999999999999999999999999999999998
Q ss_pred ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
+|+|++++++||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+++||+.
T Consensus 83 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 151 (152)
T 2aak_A 83 ADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTA 151 (152)
T ss_dssp TTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC-
T ss_pred CCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHccc
Confidence 799999999999999999999999999999999999999999999999999999863
No 8
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=6.9e-42 Score=266.58 Aligned_cols=129 Identities=26% Similarity=0.503 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648 51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL 124 (182)
Q Consensus 51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~ 124 (182)
+.+.+||++|+++|+++++. +++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus 20 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~ 99 (166)
T 2ayv_A 20 QGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN 99 (166)
T ss_dssp TTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCC
Confidence 45789999999999998766 778999999999999999999999999999999999999999999999999998
Q ss_pred ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHh
Q 048648 125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSW 179 (182)
Q Consensus 125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a 179 (182)
+|+|++||++||.+|++||.+|++++|+|.+||.+|++|+++|.++||+|+++||
T Consensus 100 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A 166 (166)
T 2ayv_A 100 SQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA 166 (166)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence 7999999999999999999999999999999999999999999999999999997
No 9
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.5e-41 Score=265.37 Aligned_cols=132 Identities=23% Similarity=0.451 Sum_probs=126.4
Q ss_pred cHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCc
Q 048648 50 LKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRND 123 (182)
Q Consensus 50 ~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI 123 (182)
++.+.+||++|+++|+++++. .++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+||||||
T Consensus 2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv 81 (169)
T 1yh2_A 2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI 81 (169)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccC
Confidence 467789999999999998766 77899999999999999999999999999999999999999999999999999
Q ss_pred c----------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 124 L----------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 124 ~----------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
+ +|+|++|+++||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 82 ~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~ 155 (169)
T 1yh2_A 82 DSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ 155 (169)
T ss_dssp CTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred CcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHccc
Confidence 8 599999999999999999999999999999999999999999999999999999963
No 10
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1
Probab=100.00 E-value=7.3e-42 Score=265.74 Aligned_cols=133 Identities=28% Similarity=0.461 Sum_probs=124.0
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCC------CCC-----CcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecc
Q 048648 48 GGLKCQLQQWMRDLKRLQQGAPP------GDD-----DIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVS 116 (182)
Q Consensus 48 ~~~~~~~~RL~~El~~l~~~~~~------~~~-----~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t 116 (182)
..+..+.+||++|+++|+++++. .++ |++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|
T Consensus 6 ~~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t 85 (163)
T 3rcz_B 6 HHSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP 85 (163)
T ss_dssp ---CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeC
Confidence 45667889999999999999877 222 8999999999999999999999999999999999999999999
Q ss_pred ccccCCcc--------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 117 GMFHRNDL--------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 117 ~i~HPnI~--------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
+||||||+ +|+|++|+++||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+++||.
T Consensus 86 ~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya~ 163 (163)
T 3rcz_B 86 PLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP 163 (163)
T ss_dssp CCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred CCccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhCc
Confidence 99999998 39999999999999999999999999999999999999999999999999999984
No 11
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1
Probab=100.00 E-value=1.7e-41 Score=261.81 Aligned_cols=133 Identities=30% Similarity=0.496 Sum_probs=125.4
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccC
Q 048648 48 GGLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHR 121 (182)
Q Consensus 48 ~~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 121 (182)
.++..+.+||++|+++|+++++. .++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++|||
T Consensus 5 ~~~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 84 (156)
T 2e2c_A 5 KERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHP 84 (156)
T ss_dssp CSCCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred ccchHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccC
Confidence 34456789999999999987665 677999999999999999999999999999999999999999999999999
Q ss_pred Ccc------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 122 NDL------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 122 nI~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
||+ +|+|++++++||.+|++||.+|++++|+|.+||.+| +|+++|.++||+|+++|+..
T Consensus 85 nv~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~~ 155 (156)
T 2e2c_A 85 NVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQSD 155 (156)
T ss_dssp TBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHHC
T ss_pred CCccCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhccC
Confidence 999 799999999999999999999999999999999999 89999999999999999863
No 12
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A
Probab=100.00 E-value=2.5e-41 Score=261.63 Aligned_cols=132 Identities=18% Similarity=0.336 Sum_probs=124.6
Q ss_pred CcHHHHHHHHHHHHHHHcCC---CC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccc
Q 048648 49 GLKCQLQQWMRDLKRLQQGA---PP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMF 119 (182)
Q Consensus 49 ~~~~~~~RL~~El~~l~~~~---~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 119 (182)
++..+.+||++|+++|+++. +. .++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||
T Consensus 5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 84 (159)
T 2bep_A 5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 84 (159)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence 45578899999999999852 22 6789999999999999999999999999999999999999999999999
Q ss_pred cCCcc-------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 120 HRNDL-------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 120 HPnI~-------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
||||+ +|+|++|+++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 85 HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~ 158 (159)
T 2bep_A 85 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAG 158 (159)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred ccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhhc
Confidence 99998 69999999999999999999999999999999999999999999999999999986
No 13
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Probab=100.00 E-value=7.5e-42 Score=261.96 Aligned_cols=128 Identities=21% Similarity=0.409 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHcCCCC------CCC-CcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-
Q 048648 53 QLQQWMRDLKRLQQGAPP------GDD-DIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL- 124 (182)
Q Consensus 53 ~~~RL~~El~~l~~~~~~------~~~-~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~- 124 (182)
+.+||++|+++|+++++. .++ |++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~ 81 (149)
T 1fxt_A 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 81 (149)
T ss_dssp CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence 469999999999998765 444 999999999999999999999999999999999999999999999999998
Q ss_pred ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
+|+|++|+++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 82 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~ 149 (149)
T 1fxt_A 82 VTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS 149 (149)
T ss_dssp SSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred CCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999999999999999999999999985
No 14
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A
Probab=100.00 E-value=1.2e-41 Score=260.87 Aligned_cols=128 Identities=23% Similarity=0.454 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc---
Q 048648 54 LQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL--- 124 (182)
Q Consensus 54 ~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~--- 124 (182)
.+||++|+++|+++++. .++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|++|||||+
T Consensus 3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G 82 (149)
T 2r0j_A 3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLG 82 (149)
T ss_dssp CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCC
Confidence 48999999999998766 678999999999999999999999999999999999999999999999999998
Q ss_pred ---------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 125 ---------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 125 ---------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
+|+|++|+++||.+|++||.+|++++|+|.+||.+|++|+++|.++||+|+++||+.
T Consensus 83 ~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 148 (149)
T 2r0j_A 83 RICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN 148 (149)
T ss_dssp BBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred EEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence 799999999999999999999999999999999999999999999999999999963
No 15
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=100.00 E-value=3.1e-41 Score=262.18 Aligned_cols=130 Identities=32% Similarity=0.548 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCc
Q 048648 51 KCQLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRND 123 (182)
Q Consensus 51 ~~~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI 123 (182)
+.+.+||++|+++++++++. +++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++|||||
T Consensus 2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV 81 (164)
T 3h8k_A 2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI 81 (164)
T ss_dssp CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence 35789999999999998776 44599999999999999999999999999999999999999999999999999
Q ss_pred c----------C---------------CCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHH
Q 048648 124 L----------K---------------WNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELS 178 (182)
Q Consensus 124 ~----------~---------------W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~ 178 (182)
+ . |+|++||++||.+|++||.+|++++|+|.+||.+|++|+++|.++||+|+++|
T Consensus 82 ~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~s 161 (164)
T 3h8k_A 82 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 161 (164)
T ss_dssp CTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence 8 2 99999999999999999999999999999999999999999999999999999
Q ss_pred hh
Q 048648 179 WK 180 (182)
Q Consensus 179 a~ 180 (182)
+.
T Consensus 162 ~~ 163 (164)
T 3h8k_A 162 LG 163 (164)
T ss_dssp HT
T ss_pred hc
Confidence 74
No 16
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Probab=100.00 E-value=1.4e-41 Score=270.60 Aligned_cols=135 Identities=25% Similarity=0.401 Sum_probs=122.6
Q ss_pred CCCcHHHHHHHHHHHHHHHcCCC-------------C------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCC
Q 048648 47 GGGLKCQLQQWMRDLKRLQQGAP-------------P------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPV 107 (182)
Q Consensus 47 ~~~~~~~~~RL~~El~~l~~~~~-------------~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~ 107 (182)
......+.+||++|+++|+++++ . .++|++.|+++|.||+||||+||+|+|+|.||++||+
T Consensus 27 ~~~~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~ 106 (193)
T 2f4z_A 27 PRGTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPY 106 (193)
T ss_dssp -----CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCC
Confidence 34455678999999999999876 2 5689999999999999999999999999999999999
Q ss_pred CCCeeeeccccccCCcc-------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHH
Q 048648 108 KPPVVPFVSGMFHRNDL-------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRI 174 (182)
Q Consensus 108 ~pP~v~f~t~i~HPnI~-------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~ 174 (182)
+||+|+|.|+||||||+ +|+|++||++||.+|++||.+|++++|+|.+||++|++|+++|.++||+|
T Consensus 107 ~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~ 186 (193)
T 2f4z_A 107 NPPKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLW 186 (193)
T ss_dssp SCCEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCeEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence 99999999999999998 69999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 048648 175 VELSWKA 181 (182)
Q Consensus 175 ~~~~a~~ 181 (182)
+++||++
T Consensus 187 t~~ya~~ 193 (193)
T 2f4z_A 187 TETFAKE 193 (193)
T ss_dssp HHHHCC-
T ss_pred HHHHccC
Confidence 9999963
No 17
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=100.00 E-value=3.2e-41 Score=262.46 Aligned_cols=131 Identities=26% Similarity=0.550 Sum_probs=124.4
Q ss_pred cHHHHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCC
Q 048648 50 LKCQLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN 122 (182)
Q Consensus 50 ~~~~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 122 (182)
+..+.+||++|+++|+++++. +++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++||||
T Consensus 2 ~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN 81 (165)
T 2ucz_A 2 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPN 81 (165)
T ss_dssp CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTT
T ss_pred ChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCC
Confidence 356789999999999998766 4579999999999999999999999999999999999999999999999999
Q ss_pred cc-------------------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHH
Q 048648 123 DL-------------------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVEL 177 (182)
Q Consensus 123 I~-------------------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~ 177 (182)
|+ +|+|++||++||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++
T Consensus 82 v~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~~~~ 161 (165)
T 2ucz_A 82 IYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILK 161 (165)
T ss_dssp BCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHH
Confidence 98 39999999999999999999999999999999999999999999999999999
Q ss_pred Hhh
Q 048648 178 SWK 180 (182)
Q Consensus 178 ~a~ 180 (182)
|+.
T Consensus 162 ~~~ 164 (165)
T 2ucz_A 162 SLG 164 (165)
T ss_dssp HTT
T ss_pred Hhh
Confidence 975
No 18
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Probab=100.00 E-value=4.8e-42 Score=264.67 Aligned_cols=130 Identities=22% Similarity=0.403 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-
Q 048648 52 CQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL- 124 (182)
Q Consensus 52 ~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~- 124 (182)
.+.+||++|+++|+++++. .++|++.|+++|.||+||||+||.|+|+|.||++||++||+|+|.|++|||||+
T Consensus 5 ~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 84 (155)
T 1jat_A 5 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR 84 (155)
T ss_dssp SCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCC
Confidence 4569999999999998766 678999999999999999999999999999999999999999999999999998
Q ss_pred -----------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 125 -----------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 125 -----------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
+|+|++++++||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 85 ~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~~ 152 (155)
T 1jat_A 85 LGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAKK 152 (155)
T ss_dssp TCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSEE
T ss_pred CCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 799999999999999999999999999999999999999999999999999999964
No 19
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=100.00 E-value=3.4e-41 Score=272.42 Aligned_cols=132 Identities=23% Similarity=0.411 Sum_probs=126.4
Q ss_pred CcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCC
Q 048648 49 GLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN 122 (182)
Q Consensus 49 ~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 122 (182)
..+.+.+||++|+++|+++++. .++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+|||||
T Consensus 20 ~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPN 99 (216)
T 2pwq_A 20 QGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPN 99 (216)
T ss_dssp CSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCCC
Confidence 3456789999999999998776 6789999999999999999999999999999999999999999999999999
Q ss_pred cc-------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 123 DL-------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 123 I~-------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
|+ +|+|++|+++||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 100 I~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~ 170 (216)
T 2pwq_A 100 ISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFAT 170 (216)
T ss_dssp BCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred CcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 98 69999999999999999999999999999999999999999999999999999996
No 20
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B
Probab=100.00 E-value=4.2e-41 Score=259.95 Aligned_cols=130 Identities=28% Similarity=0.443 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHcCCCC------C-----CCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccc
Q 048648 51 KCQLQQWMRDLKRLQQGAPP------G-----DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMF 119 (182)
Q Consensus 51 ~~~~~RL~~El~~l~~~~~~------~-----~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 119 (182)
..+.+||++|+++|+++++. . ++|++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|
T Consensus 3 ~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~ 82 (157)
T 2gjd_A 3 SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFY 82 (157)
T ss_dssp CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTCC
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCCc
Confidence 35779999999999998876 1 148999999999999999999999999999999999999999999999
Q ss_pred cCCcc--------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 120 HRNDL--------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 120 HPnI~--------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
||||+ +|+|++++++||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+++||+
T Consensus 83 HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~ 157 (157)
T 2gjd_A 83 HPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK 157 (157)
T ss_dssp CTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred cCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence 99998 39999999999999999999999999999999999999999999999999999985
No 21
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Probab=100.00 E-value=5.3e-41 Score=260.36 Aligned_cols=133 Identities=27% Similarity=0.465 Sum_probs=125.0
Q ss_pred CcHHHHHHHHHHHHHHHcCCCC------C-----CCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccc
Q 048648 49 GLKCQLQQWMRDLKRLQQGAPP------G-----DDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSG 117 (182)
Q Consensus 49 ~~~~~~~RL~~El~~l~~~~~~------~-----~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~ 117 (182)
++..+.+||++|+++|+++++. . ++|++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|+
T Consensus 4 M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~ 83 (161)
T 2grr_A 4 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPP 83 (161)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEecC
Confidence 4567889999999999998766 1 3689999999999999999999999999999999999999999999
Q ss_pred cccCCcc--------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 118 MFHRNDL--------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 118 i~HPnI~--------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
+|||||+ +|+|++++++||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+++||+.
T Consensus 84 i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~~ 161 (161)
T 2grr_A 84 LFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAPS 161 (161)
T ss_dssp CCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC-
T ss_pred cccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhcC
Confidence 9999998 499999999999999999999999999999999999999999999999999999863
No 22
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=100.00 E-value=7.8e-41 Score=267.83 Aligned_cols=133 Identities=19% Similarity=0.340 Sum_probs=124.1
Q ss_pred CcHHHHHHHHHHHHHHHcCC---CC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccc
Q 048648 49 GLKCQLQQWMRDLKRLQQGA---PP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMF 119 (182)
Q Consensus 49 ~~~~~~~RL~~El~~l~~~~---~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 119 (182)
++..+.+||++|+++|+++. +. .++|++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|+||
T Consensus 2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~ 81 (201)
T 3k9o_A 2 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 81 (201)
T ss_dssp --CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCcc
Confidence 34456899999999999863 22 6789999999999999999999999999999999999999999999999
Q ss_pred cCCcc-------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 120 HRNDL-------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 120 HPnI~-------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
||||+ +|+|++|+++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 82 HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~ 156 (201)
T 3k9o_A 82 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 156 (201)
T ss_dssp BTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred cCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 99998 799999999999999999999999999999999999999999999999999999964
No 23
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Probab=100.00 E-value=1.1e-40 Score=265.71 Aligned_cols=130 Identities=25% Similarity=0.445 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648 51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL 124 (182)
Q Consensus 51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~ 124 (182)
+.+.+||++|+++|+++++. .++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus 47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~ 126 (194)
T 3bzh_A 47 STSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNIN 126 (194)
T ss_dssp HHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceEC
Confidence 56789999999999998766 778999999999999999999999999999999999999999999999999998
Q ss_pred ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
+|+|+++|.+||.+|++||.+|++++|+|.+||.+|++|+++|.++||+|+++||+
T Consensus 127 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~ 194 (194)
T 3bzh_A 127 SQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 194 (194)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred CCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence 79999999999999999999999999999999999999999999999999999984
No 24
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A
Probab=100.00 E-value=2.8e-40 Score=257.57 Aligned_cols=134 Identities=14% Similarity=0.262 Sum_probs=125.7
Q ss_pred CCCCcHHHHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc
Q 048648 46 VGGGLKCQLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM 118 (182)
Q Consensus 46 ~~~~~~~~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i 118 (182)
+....+.+.+||++|+++|+++++. +++|++.|.++| ||++|||+||+|+++|.||++||++||+|+|.|++
T Consensus 8 ~~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i 86 (167)
T 3fn1_B 8 STRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKI 86 (167)
T ss_dssp CCCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCC
T ss_pred CccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCc
Confidence 3445568889999999999998776 567899999999 89999999999999999999999999999999999
Q ss_pred ccCCcc------------------CCCCcccHHHHHHHHHHhhCC-CCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHh
Q 048648 119 FHRNDL------------------KWNSDYDVVAIFATIQLMLGD-PNLYSAANQQAATMLTGGRIDYYKKAQRIVELSW 179 (182)
Q Consensus 119 ~HPnI~------------------~W~p~~tl~~il~~I~~ll~~-p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a 179 (182)
|||||+ +|+|++|+++||.+|++||.+ |++++|+|.+||.+|++|+++|.++||+|+++||
T Consensus 87 ~HPnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A 166 (167)
T 3fn1_B 87 WHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 166 (167)
T ss_dssp CCSSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence 999998 299999999999999999999 7999999999999999999999999999999998
Q ss_pred h
Q 048648 180 K 180 (182)
Q Consensus 180 ~ 180 (182)
+
T Consensus 167 ~ 167 (167)
T 3fn1_B 167 R 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 25
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Probab=100.00 E-value=1.9e-40 Score=255.62 Aligned_cols=129 Identities=21% Similarity=0.432 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648 52 CQLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL 124 (182)
Q Consensus 52 ~~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~ 124 (182)
.+.+||++|+++|+++++. +++|++.|+++|. |+||||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~ 82 (155)
T 1wzv_A 4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD 82 (155)
T ss_dssp -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC
Confidence 4679999999999998766 6789999999999 9999999999999999999999999999999999999997
Q ss_pred -------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 125 -------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 125 -------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
+|+|++++++||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|+++||+.
T Consensus 83 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~ 152 (155)
T 1wzv_A 83 ENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGVD 152 (155)
T ss_dssp TTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCEE
T ss_pred CCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 799999999999999999999999999999999999999999999999999999974
No 26
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}
Probab=100.00 E-value=7.7e-41 Score=257.27 Aligned_cols=129 Identities=24% Similarity=0.436 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHcCCCC---CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-----
Q 048648 53 QLQQWMRDLKRLQQGAPP---GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL----- 124 (182)
Q Consensus 53 ~~~RL~~El~~l~~~~~~---~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~----- 124 (182)
+.+||++|+++++++... .++|++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus 3 a~~Rl~kEl~~l~~~~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G~ 82 (152)
T 2onu_A 3 SLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGS 82 (152)
T ss_dssp CCCHHHHTHHHHHHHTCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTCB
T ss_pred HHHHHHHHHHhcCcCCCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCCe
Confidence 458999999999886544 678999999999999999999999999999999999999999999999999998
Q ss_pred --------CCCCcccHHHHHHH-HHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 125 --------KWNSDYDVVAIFAT-IQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 125 --------~W~p~~tl~~il~~-I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
+|+|++++++||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 83 iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~ 148 (152)
T 2onu_A 83 VCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASK 148 (152)
T ss_dssp BCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCG
T ss_pred EecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 69999999999999 6899999999999999999999999999999999999999964
No 27
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=2.6e-40 Score=260.41 Aligned_cols=131 Identities=27% Similarity=0.428 Sum_probs=122.9
Q ss_pred CcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCC
Q 048648 49 GLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRN 122 (182)
Q Consensus 49 ~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn 122 (182)
++..+.+||++|+++|+++++. +++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|++||||
T Consensus 27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN 106 (179)
T 1i7k_A 27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPN 106 (179)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTT
T ss_pred cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCc
Confidence 4567889999999999997665 6679999999999999999999999999999999999999999999999999
Q ss_pred cc------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 123 DL------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 123 I~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
|+ .|+|+++|++||.+|++||.+|++++|+|.+||++| +|+++|.++|++++++++.
T Consensus 107 V~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~ 175 (179)
T 1i7k_A 107 VDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVT 175 (179)
T ss_dssp BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC
T ss_pred cccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhc
Confidence 98 799999999999999999999999999999999999 9999999999999999874
No 28
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=100.00 E-value=1.1e-39 Score=269.03 Aligned_cols=133 Identities=19% Similarity=0.340 Sum_probs=125.7
Q ss_pred CcHHHHHHHHHHHHHHHcCC---CC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccc
Q 048648 49 GLKCQLQQWMRDLKRLQQGA---PP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMF 119 (182)
Q Consensus 49 ~~~~~~~RL~~El~~l~~~~---~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~ 119 (182)
++..+.+||++|+++|+++. +. .++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+||
T Consensus 54 Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~ 133 (253)
T 3e46_A 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 133 (253)
T ss_dssp CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred ccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCc
Confidence 45678999999999998862 22 6789999999999999999999999999999999999999999999999
Q ss_pred cCCcc-------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 120 HRNDL-------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 120 HPnI~-------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
||||+ +|+|+++|++||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 134 HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~ 208 (253)
T 3e46_A 134 HPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA 208 (253)
T ss_dssp BTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred cCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence 99998 799999999999999999999999999999999999999999999999999999964
No 29
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Probab=100.00 E-value=5.9e-40 Score=259.34 Aligned_cols=133 Identities=29% Similarity=0.488 Sum_probs=125.2
Q ss_pred CcHHHHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccC
Q 048648 49 GLKCQLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHR 121 (182)
Q Consensus 49 ~~~~~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 121 (182)
+++.+.+||++|+++|+++++. +++|++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||
T Consensus 4 ~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP 83 (183)
T 3rz3_A 4 GSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHP 83 (183)
T ss_dssp -CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCT
T ss_pred cchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccC
Confidence 3456789999999999998876 678999999999999999999999999999999999999999999999999
Q ss_pred Ccc-------------------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhh------CHHHHHHH
Q 048648 122 NDL-------------------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTG------GRIDYYKK 170 (182)
Q Consensus 122 nI~-------------------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~------d~~~f~~~ 170 (182)
||+ +|+|++||++||.+|++||.+|++++|+|.+|+.+|++ |+++|.++
T Consensus 84 nV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~~y~~~ 163 (183)
T 3rz3_A 84 NIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDI 163 (183)
T ss_dssp TBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred CCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHHHHHHH
Confidence 998 29999999999999999999999999999999999998 78999999
Q ss_pred HHHHHHHHhhc
Q 048648 171 AQRIVELSWKA 181 (182)
Q Consensus 171 ar~~~~~~a~~ 181 (182)
||+++++++..
T Consensus 164 v~~~v~~s~~~ 174 (183)
T 3rz3_A 164 IRKQVLGTKVD 174 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999864
No 30
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=6.8e-40 Score=255.98 Aligned_cols=129 Identities=31% Similarity=0.481 Sum_probs=120.6
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccC
Q 048648 48 GGLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHR 121 (182)
Q Consensus 48 ~~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 121 (182)
.++..+.+||++|+++|+++++. .++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus 19 ~M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP 98 (169)
T 1yrv_A 19 SMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHP 98 (169)
T ss_dssp GGGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCT
T ss_pred ccChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCccC
Confidence 34557889999999999988766 778999999999999999999999999999999999999999999999999
Q ss_pred Cc-c--------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHH
Q 048648 122 ND-L--------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVEL 177 (182)
Q Consensus 122 nI-~--------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~ 177 (182)
|| + +|+|++|+++||.+|++||.+|++++|+|.+||++|++|+++|.++ ++++++
T Consensus 99 NI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~ 168 (169)
T 1yrv_A 99 NVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR 168 (169)
T ss_dssp TBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred cccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence 99 4 6999999999999999999999999999999999999999999998 887764
No 31
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.9e-40 Score=259.35 Aligned_cols=129 Identities=23% Similarity=0.383 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHcCCCC--CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-----
Q 048648 52 CQLQQWMRDLKRLQQGAPP--GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL----- 124 (182)
Q Consensus 52 ~~~~RL~~El~~l~~~~~~--~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~----- 124 (182)
.+.+||++|+++|+..... -.+|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 25 ~a~~RL~kEl~~l~~~g~~v~~~ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G~ 104 (179)
T 2z5d_A 25 PGKRRMDTDVIKLIESKHEVTILGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGT 104 (179)
T ss_dssp HHHHHHHHHHHHHHHSSSCEEEEEETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred HHHHHHHHHHHhcCcCCCEEEECCCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCCe
Confidence 5789999999999875443 226789999999999999999999999999999999999999999999999998
Q ss_pred --------CCCCcccHHHHHHH-HHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 125 --------KWNSDYDVVAIFAT-IQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 125 --------~W~p~~tl~~il~~-I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
+|+|++|+++||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus 105 ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~ 169 (179)
T 2z5d_A 105 VCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT 169 (179)
T ss_dssp BCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSS
T ss_pred EeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence 69999999999999 999999999999999999999999999999999999999986
No 32
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A
Probab=100.00 E-value=1.5e-39 Score=254.71 Aligned_cols=132 Identities=16% Similarity=0.314 Sum_probs=122.9
Q ss_pred CcHHHHHHHHHHHHHHHc-C--------CC---C------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCC
Q 048648 49 GLKCQLQQWMRDLKRLQQ-G--------AP---P------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110 (182)
Q Consensus 49 ~~~~~~~RL~~El~~l~~-~--------~~---~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP 110 (182)
++..+.+||++|+++|++ . +. . +++|++.|+++|.||+||||+||+|+|+|.||++||++||
T Consensus 3 Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP 82 (172)
T 2y9m_A 3 MADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP 82 (172)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred CcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCC
Confidence 456788999999999998 4 22 1 5679999999999999999999999999999999999999
Q ss_pred eeeecc-ccccCCcc--------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhh-CHHHHHHHHHHH
Q 048648 111 VVPFVS-GMFHRNDL--------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTG-GRIDYYKKAQRI 174 (182)
Q Consensus 111 ~v~f~t-~i~HPnI~--------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~-d~~~f~~~ar~~ 174 (182)
+|+|.| +||||||+ +|+|++|+++||.+|++||.+|++++|+|.+||++|++ |+++|.++||+|
T Consensus 83 ~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~~ 162 (172)
T 2y9m_A 83 KISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYF 162 (172)
T ss_dssp EEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHHH
T ss_pred EEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999 99999994 79999999999999999999999999999999999999 999999999999
Q ss_pred HHHHhh
Q 048648 175 VELSWK 180 (182)
Q Consensus 175 ~~~~a~ 180 (182)
+++++.
T Consensus 163 ~~~~~~ 168 (172)
T 2y9m_A 163 LAERER 168 (172)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 999874
No 33
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Probab=100.00 E-value=5.5e-40 Score=256.96 Aligned_cols=129 Identities=23% Similarity=0.353 Sum_probs=122.9
Q ss_pred HHHHHHHHHHHHHHcCCCC--CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-----
Q 048648 52 CQLQQWMRDLKRLQQGAPP--GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL----- 124 (182)
Q Consensus 52 ~~~~RL~~El~~l~~~~~~--~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~----- 124 (182)
.+.+||++|+++|++++.. .++|++.|+++|.||+||||+||+|+|+|.||++||++||+|+|.|+||||||+
T Consensus 12 ~~~~RL~~El~~l~~~~~~v~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G~ 91 (171)
T 1yf9_A 12 RSNRRREMDYMRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGS 91 (171)
T ss_dssp -CCHHHHHHHHHHHSSSSCEEECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred cHHHHHHHHHHHHHhCCCCCCCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCCe
Confidence 5579999999999998755 678999999999999999999999999999999999999999999999999998
Q ss_pred --------CCCCcccHHHHHHHH-HHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 125 --------KWNSDYDVVAIFATI-QLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 125 --------~W~p~~tl~~il~~I-~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
+|+|++|+++||.+| ++||.+|++++|+|.+||.+|++|+++|.++||+|+++||+
T Consensus 92 iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~ 156 (171)
T 1yf9_A 92 VCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHAT 156 (171)
T ss_dssp BCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred EeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence 799999999999997 79999999999999999999999999999999999999986
No 34
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1
Probab=100.00 E-value=2.2e-40 Score=267.52 Aligned_cols=129 Identities=21% Similarity=0.415 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-
Q 048648 53 QLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL- 124 (182)
Q Consensus 53 ~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~- 124 (182)
+.+||++|+++|+++++. ++++++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|+||||||+
T Consensus 3 a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~ 82 (215)
T 1tte_A 3 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS 82 (215)
T ss_dssp THHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCS
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcC
Confidence 569999999999998766 334567999999999999999999999999999999999999999999999998
Q ss_pred ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
+|+|++|+++||.+|++||.+|++++|+|.+||.+|++|++.|.++||+|+++||+.
T Consensus 83 ~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~~ 151 (215)
T 1tte_A 83 VTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYASE 151 (215)
T ss_dssp SSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSCC
T ss_pred CCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence 799999999999999999999999999999999999999999999999999999863
No 35
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A
Probab=100.00 E-value=9.1e-40 Score=255.93 Aligned_cols=129 Identities=31% Similarity=0.512 Sum_probs=93.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc
Q 048648 46 VGGGLKCQLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM 118 (182)
Q Consensus 46 ~~~~~~~~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i 118 (182)
+++.+..+.+||++|+++|+++++. +++|++.|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+|
T Consensus 11 ~~~~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i 90 (172)
T 2awf_A 11 SSGLVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEI 90 (172)
T ss_dssp --CCCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred cCCChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCC
Confidence 4556677789999999999998766 457999999999999999999999999999999999999999999999
Q ss_pred ccCCcc----------C---------------CCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHH-HHHHHHH
Q 048648 119 FHRNDL----------K---------------WNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRI-DYYKKAQ 172 (182)
Q Consensus 119 ~HPnI~----------~---------------W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~-~f~~~ar 172 (182)
|||||+ . |+|+++|++||.+|++||.+|++++|+|.+||++|++|++ +|.++||
T Consensus 91 ~HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr 170 (172)
T 2awf_A 91 WHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVA 170 (172)
T ss_dssp CCTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC---------------------------
T ss_pred ccCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHH
Confidence 999998 2 9999999999999999999999999999999999999999 9999998
Q ss_pred HH
Q 048648 173 RI 174 (182)
Q Consensus 173 ~~ 174 (182)
++
T Consensus 171 ~~ 172 (172)
T 2awf_A 171 RC 172 (172)
T ss_dssp --
T ss_pred hC
Confidence 74
No 36
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C
Probab=100.00 E-value=6.3e-40 Score=252.50 Aligned_cols=128 Identities=19% Similarity=0.424 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHcCCCC-------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc-
Q 048648 53 QLQQWMRDLKRLQQGAPP-------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL- 124 (182)
Q Consensus 53 ~~~RL~~El~~l~~~~~~-------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~- 124 (182)
+.+||++|+++|+++++. +++|++.|+++|. |+||||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus 3 a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~ 81 (154)
T 1c4z_D 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDE 81 (154)
T ss_dssp -CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCT
T ss_pred HHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCC
Confidence 568999999999988765 5689999999997 9999999999999999999999999999999999999998
Q ss_pred ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
+|+|++|+++||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 82 ~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~ 150 (154)
T 1c4z_D 82 KGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEK 150 (154)
T ss_dssp TCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC---
T ss_pred CCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 699999999999999999999999999999999999999999999999999999974
No 37
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=1.9e-38 Score=245.78 Aligned_cols=127 Identities=21% Similarity=0.338 Sum_probs=117.4
Q ss_pred cHHHHHHHHHHHHHHHcCCCC-----CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648 50 LKCQLQQWMRDLKRLQQGAPP-----GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL 124 (182)
Q Consensus 50 ~~~~~~RL~~El~~l~~~~~~-----~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~ 124 (182)
.+.+.+||++|+++|+..... +++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 4 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~ 82 (160)
T 1y8x_A 4 ASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID 82 (160)
T ss_dssp CCHHHHHHHHHHHTCCCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBC
T ss_pred ccHHHHHHHHHHHhcCCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCC
Confidence 456789999999999422111 578999999998 99999999999999999999999999999999999999998
Q ss_pred ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHH
Q 048648 125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVEL 177 (182)
Q Consensus 125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~ 177 (182)
+|+|++|+++||.+|++||.+|++++|+|.+||.+|++|+++|.++||++++.
T Consensus 83 ~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~ 147 (160)
T 1y8x_A 83 LEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 147 (160)
T ss_dssp TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred CCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence 79999999999999999999999999999999999999999999999999874
No 38
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Probab=100.00 E-value=7.6e-38 Score=246.63 Aligned_cols=129 Identities=21% Similarity=0.340 Sum_probs=119.1
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccC
Q 048648 48 GGLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHR 121 (182)
Q Consensus 48 ~~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 121 (182)
..++.+.+||++|+++|+. ++. +++|++.|+++| ||++|||+||+|+++|.||++||++||+|+|.|++|||
T Consensus 22 ~~~~~~~~RL~kEl~~l~~-~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HP 99 (180)
T 2nvu_C 22 KKASAAQLRIQKDINELNL-PKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHP 99 (180)
T ss_dssp CSCCHHHHHHHHHHHTCCC-CTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBT
T ss_pred CCccHHHHHHHHHHHhcCC-CCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccC
Confidence 3456778999999999932 222 578999999998 99999999999999999999999999999999999999
Q ss_pred Ccc------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHH
Q 048648 122 NDL------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELS 178 (182)
Q Consensus 122 nI~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~ 178 (182)
||+ +|+|++|+++||.+|+++|.+|++++|+|.+||.+|++|+++|.++||++++.+
T Consensus 100 NV~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~~ 168 (180)
T 2nvu_C 100 NIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 168 (180)
T ss_dssp TBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHSE
T ss_pred CCCCCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhhC
Confidence 998 799999999999999999999999999999999999999999999999998753
No 39
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=100.00 E-value=1.1e-37 Score=272.13 Aligned_cols=131 Identities=26% Similarity=0.484 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648 51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL 124 (182)
Q Consensus 51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~ 124 (182)
+.+.+||++|+++|+++++. .++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus 2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~ 81 (399)
T 4ddg_A 2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81 (399)
T ss_dssp HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence 45789999999999998877 678999999999999999999999999999999999999999999999999999
Q ss_pred ------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHhhc
Q 048648 125 ------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELSWKA 181 (182)
Q Consensus 125 ------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a~~ 181 (182)
+|+|++|+++||.+|++||.+|++++|+|.+||++|++|+++|.++||+|+++||+.
T Consensus 82 ~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~ 150 (399)
T 4ddg_A 82 SNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMG 150 (399)
T ss_dssp TTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSC
T ss_pred CCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhcc
Confidence 899999999999999999999999999999999999999999999999999999864
No 40
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C
Probab=100.00 E-value=9.3e-37 Score=242.29 Aligned_cols=132 Identities=22% Similarity=0.395 Sum_probs=121.2
Q ss_pred cCCCCcHHHHHHHHHHHHHHHcCCCC---------CCCCcc---eEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCee
Q 048648 45 NVGGGLKCQLQQWMRDLKRLQQGAPP---------GDDDIM---LRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVV 112 (182)
Q Consensus 45 ~~~~~~~~~~~RL~~El~~l~~~~~~---------~~~~~~---~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v 112 (182)
++....+.+.+||++|+++|+ .++. +++|++ .|+++|. |++|||+||.|+++|.||++||++||+|
T Consensus 22 ~~~~~~s~a~~RL~kEl~~l~-~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v 99 (190)
T 3o2u_A 22 SIQPNLSAARIRLKRDLDSLD-LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKV 99 (190)
T ss_dssp SSSCCCCHHHHHHHHHHHTCC-CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEE
T ss_pred CCCCCccHHHHHHHHHHHhcc-CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCcee
Confidence 455566788899999999998 3222 468999 9999996 8889999999999999999999999999
Q ss_pred eeccccccCCcc------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHHHHHHHHHHH
Q 048648 113 PFVSGMFHRNDL------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYKKAQRIVELS 178 (182)
Q Consensus 113 ~f~t~i~HPnI~------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~ 178 (182)
+|.|+||||||+ +|+|++|+++||.+|+++|.+|++++|+|.+||.+|++|+++|.++||+|++.+
T Consensus 100 ~f~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~ 177 (190)
T 3o2u_A 100 VCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGG 177 (190)
T ss_dssp EECSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTC
T ss_pred EEecCcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhc
Confidence 999999999999 799999999999999999999999999999999999999999999999999754
No 41
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}
Probab=100.00 E-value=2.5e-36 Score=235.30 Aligned_cols=125 Identities=18% Similarity=0.336 Sum_probs=113.7
Q ss_pred CcHHHHHHHHHHHHHHHcCC------------CC------CCCCcceEEEEEecCCCCCCC--CCEEEEEEeeCCCCCCC
Q 048648 49 GLKCQLQQWMRDLKRLQQGA------------PP------GDDDIMLRNAIIVGLGGTLFD--GGIFKLTLKFTKEYPVK 108 (182)
Q Consensus 49 ~~~~~~~RL~~El~~l~~~~------------~~------~~~~~~~w~~~i~Gp~~tpY~--gg~f~~~i~fp~~YP~~ 108 (182)
+++.+.+||++|+++|++++ +. +++|++.|+++|.||+||||+ ||.|+++|.||++||++
T Consensus 5 Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~ 84 (167)
T 4ds2_A 5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHE 84 (167)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTS
T ss_pred ccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCC
Confidence 44456799999999999876 22 678999999999999999999 99999999999999999
Q ss_pred CCeeeeccccccCCcc------------CCCCcccHHHHHH-HHHHhhCC--CCCCChhhHHHHHHHhhCHHHHHHHHHH
Q 048648 109 PPVVPFVSGMFHRNDL------------KWNSDYDVVAIFA-TIQLMLGD--PNLYSAANQQAATMLTGGRIDYYKKAQR 173 (182)
Q Consensus 109 pP~v~f~t~i~HPnI~------------~W~p~~tl~~il~-~I~~ll~~--p~~~~p~n~~a~~~~~~d~~~f~~~ar~ 173 (182)
||+|+|.|++|||||+ +|+|+++++++|+ .|++|+.+ |++++|+|.+||++|++|+++|.++||+
T Consensus 85 pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~~f~~~vrr 164 (167)
T 4ds2_A 85 PPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQDFAARVRR 164 (167)
T ss_dssp CCEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHHHHHHHHTT
T ss_pred CCEEEEeCCcccccCCCCCEEEcccCcCCCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHHHHHHHHhh
Confidence 9999999999999999 8999999999755 57778774 8999999999999999999999999984
No 42
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C
Probab=100.00 E-value=8.5e-36 Score=230.02 Aligned_cols=116 Identities=21% Similarity=0.369 Sum_probs=104.3
Q ss_pred CCcHHHHHHHHHHHHHHHcC-CCC-------CCC--CcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccc
Q 048648 48 GGLKCQLQQWMRDLKRLQQG-APP-------GDD--DIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSG 117 (182)
Q Consensus 48 ~~~~~~~~RL~~El~~l~~~-~~~-------~~~--~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~ 117 (182)
.....+.+||++|+++++++ ++. +++ |++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|+
T Consensus 17 ~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~ 96 (156)
T 2q0v_A 17 QGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK 96 (156)
T ss_dssp SSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred cccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcc
Confidence 34467789999999999998 443 223 59999999999999999999999999999999999999999999
Q ss_pred cccCCcc--------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhC
Q 048648 118 MFHRNDL--------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGG 163 (182)
Q Consensus 118 i~HPnI~--------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d 163 (182)
||||||+ +|+|++|+++||.+|++||.+|++++|+|.+||.+|++|
T Consensus 97 i~HPNV~~~G~icisCL~iL~~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n 156 (156)
T 2q0v_A 97 IEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN 156 (156)
T ss_dssp CCCTTBCTTSBBCGGGSHHHHTCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred cccCCCccCCeEehhhcccccCCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence 9999998 799999999999999999999999999999999998764
No 43
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Probab=100.00 E-value=4.7e-35 Score=248.07 Aligned_cols=146 Identities=16% Similarity=0.289 Sum_probs=130.6
Q ss_pred hhhhHHHHhhcCCCCcHHHHHHHHHHHHHHHcCCCC----------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCC
Q 048648 35 LDLLETLVILNVGGGLKCQLQQWMRDLKRLQQGAPP----------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKE 104 (182)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~RL~~El~~l~~~~~~----------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~ 104 (182)
..|+...+....+.++..+.+||++|+++|+++++. +++|++.|+++|.||+||||+||+|+|+|.||++
T Consensus 59 ~~~~~~~~~~~~~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~d 138 (323)
T 3ceg_A 59 NYHYMSQVKNANDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQD 138 (323)
T ss_dssp CCTTHHHHHTCCCCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTT
T ss_pred chHHHhhhhccCCCCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCC
Confidence 344555555556677888999999999999987654 4689999999999999999999999999999999
Q ss_pred CCCCCCeeeeccc-----cccCCcc-------------------CCCCcc-cHHHHHHHHHHhhC--CCCCCChhhHHH-
Q 048648 105 YPVKPPVVPFVSG-----MFHRNDL-------------------KWNSDY-DVVAIFATIQLMLG--DPNLYSAANQQA- 156 (182)
Q Consensus 105 YP~~pP~v~f~t~-----i~HPnI~-------------------~W~p~~-tl~~il~~I~~ll~--~p~~~~p~n~~a- 156 (182)
||++||+|+|.|+ +|||||+ +|+|++ ||++||.+|++||. +|++++|+|.++
T Consensus 139 YP~~PP~V~F~T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~ 218 (323)
T 3ceg_A 139 YPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSR 218 (323)
T ss_dssp TTTSCCEEEECCSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGT
T ss_pred CCCCCCeEEEeccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHH
Confidence 9999999999998 9999998 499999 89999999999996 788899999876
Q ss_pred -HHHHhhCHHHHHHHHHHHHHHHhh
Q 048648 157 -ATMLTGGRIDYYKKAQRIVELSWK 180 (182)
Q Consensus 157 -~~~~~~d~~~f~~~ar~~~~~~a~ 180 (182)
+.++.+|+++|.++||+|+.+||+
T Consensus 219 a~~~~~~d~~~Y~~~vr~~t~k~A~ 243 (323)
T 3ceg_A 219 GTPSGTQSSREYDGNIRQATVKWAM 243 (323)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 678999999999999999999986
No 44
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Probab=100.00 E-value=3.8e-34 Score=221.50 Aligned_cols=117 Identities=21% Similarity=0.393 Sum_probs=101.8
Q ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHcCCCC--------CCCC--cceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCC
Q 048648 41 LVILNVGGGLKCQLQQWMRDLKRLQQGAPP--------GDDD--IMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPP 110 (182)
Q Consensus 41 ~~~~~~~~~~~~~~~RL~~El~~l~~~~~~--------~~~~--~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP 110 (182)
++.-+++.....+.+||++|+++++++++. +++| ++.|+++|.||+||||+||+|+++|.||++||++||
T Consensus 14 ~~~~~~~~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP 93 (160)
T 2a4d_A 14 LVPRGSTGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPP 93 (160)
T ss_dssp -------CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCC
T ss_pred cccccCCeeechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCc
Confidence 444455555678899999999999997654 3444 899999999999999999999999999999999999
Q ss_pred eeeeccccccCCcc---------------CCCCcccHHHHHHHHHHhhC-CCCCCChhhHHHH
Q 048648 111 VVPFVSGMFHRNDL---------------KWNSDYDVVAIFATIQLMLG-DPNLYSAANQQAA 157 (182)
Q Consensus 111 ~v~f~t~i~HPnI~---------------~W~p~~tl~~il~~I~~ll~-~p~~~~p~n~~a~ 157 (182)
+|+|.|+||||||+ +|+|++|+++||.+|+++|. +|++++|+|.|||
T Consensus 94 ~v~F~T~i~HPNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 156 (160)
T 2a4d_A 94 FVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 156 (160)
T ss_dssp EEEESBCCCCTTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred EEEEecCceeCCEECCCCEEehhhcCCccCCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence 99999999999997 69999999999999999995 7999999999987
No 45
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Probab=100.00 E-value=4.4e-35 Score=221.77 Aligned_cols=110 Identities=17% Similarity=0.347 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHcC-CCC-------CCC--CcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccccc
Q 048648 51 KCQLQQWMRDLKRLQQG-APP-------GDD--DIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFH 120 (182)
Q Consensus 51 ~~~~~RL~~El~~l~~~-~~~-------~~~--~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 120 (182)
..+.+||++|+++++++ ++. +++ |++.|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus 5 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H 84 (138)
T 1jat_B 5 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL 84 (138)
T ss_dssp CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEccccc
Confidence 35679999999999987 343 333 58999999999999999999999999999999999999999999999
Q ss_pred CCcc--------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHH
Q 048648 121 RNDL--------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATML 160 (182)
Q Consensus 121 PnI~--------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~ 160 (182)
|||+ +|+|++|+++||.+|+++|.+|++++|+|.+||.+|
T Consensus 85 Pnv~~~~G~i~~cL~~l~~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y 138 (138)
T 1jat_B 85 PCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF 138 (138)
T ss_dssp TTBCTTTCBBCTTSHHHHTCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred CCEeCCCCEEeeecccCCCCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence 9998 799999999999999999999999999999887654
No 46
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1
Probab=100.00 E-value=1.3e-32 Score=204.90 Aligned_cols=100 Identities=22% Similarity=0.416 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc-ccCCc
Q 048648 51 KCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM-FHRND 123 (182)
Q Consensus 51 ~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnI 123 (182)
+.+.+||++|+++++++++. +++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|++ |||||
T Consensus 5 ~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv 84 (125)
T 2fo3_A 5 GNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHV 84 (125)
T ss_dssp ----CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTB
T ss_pred hHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcC
Confidence 35679999999999998766 778999999999999999999999999999999999999999999997 99999
Q ss_pred c------------CCCCcccHHHHHHHHHHhhCCCCCCC
Q 048648 124 L------------KWNSDYDVVAIFATIQLMLGDPNLYS 150 (182)
Q Consensus 124 ~------------~W~p~~tl~~il~~I~~ll~~p~~~~ 150 (182)
+ +|+|++|+++||.+|++||.+|+.+.
T Consensus 85 ~~~G~iCl~iL~~~W~P~~~i~~vl~si~~ll~~p~~~~ 123 (125)
T 2fo3_A 85 YSNGDICLSLLGDDYNPSLSISGLVLSIISMLSSAKEKK 123 (125)
T ss_dssp CTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHC------
T ss_pred CCCCEEEchhcCCCCCCCCcHHHHHHHHHHHHhCccccc
Confidence 9 89999999999999999999998753
No 47
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}
Probab=99.98 E-value=6.6e-32 Score=203.88 Aligned_cols=100 Identities=22% Similarity=0.429 Sum_probs=93.6
Q ss_pred CcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc-ccC
Q 048648 49 GLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM-FHR 121 (182)
Q Consensus 49 ~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HP 121 (182)
+.+.+.+||++|+++++++++. .++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|++ |||
T Consensus 17 ~~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HP 96 (136)
T 2h2y_A 17 NLGNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHT 96 (136)
T ss_dssp CTTSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCT
T ss_pred cchHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCC
Confidence 3446789999999999998766 678999999999999999999999999999999999999999999997 999
Q ss_pred Ccc------------CCCCcccHHHHHHHHHHhhCCCCC
Q 048648 122 NDL------------KWNSDYDVVAIFATIQLMLGDPNL 148 (182)
Q Consensus 122 nI~------------~W~p~~tl~~il~~I~~ll~~p~~ 148 (182)
||+ +|+|++|+++||.+|++||.+|+.
T Consensus 97 nv~~~G~ICl~iL~~~WsP~~ti~~vL~si~sll~~p~~ 135 (136)
T 2h2y_A 97 HVYSNGDICLSVLGDDYNPSLSISGLILSIISMLSSAKE 135 (136)
T ss_dssp TBCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred cCCCCCEEECccccCCCCCCCcHHHHHHHHHHHHhCcCc
Confidence 998 799999999999999999999874
No 48
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}
Probab=99.97 E-value=9.6e-33 Score=215.63 Aligned_cols=107 Identities=20% Similarity=0.423 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHcCCCC--------CCCC--cceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccccc
Q 048648 51 KCQLQQWMRDLKRLQQGAPP--------GDDD--IMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFH 120 (182)
Q Consensus 51 ~~~~~RL~~El~~l~~~~~~--------~~~~--~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H 120 (182)
..+.+||++|+++|+++++. +++| ++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|+|||
T Consensus 34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~H 113 (170)
T 2hlw_A 34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM 113 (170)
T ss_dssp CCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccccc
Confidence 45789999999999997644 3444 8999999999999999999999999999999999999999999999
Q ss_pred CCcc---------------CCCCcccHHHHHHHHHHhhC-CCCCCChhhHHHH
Q 048648 121 RNDL---------------KWNSDYDVVAIFATIQLMLG-DPNLYSAANQQAA 157 (182)
Q Consensus 121 PnI~---------------~W~p~~tl~~il~~I~~ll~-~p~~~~p~n~~a~ 157 (182)
|||+ .|+|++|+++||.+|++||. +|++++|+|.|||
T Consensus 114 PNV~~~~G~ICl~iL~~~~~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa 166 (170)
T 2hlw_A 114 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ 166 (170)
T ss_dssp SSBCSSSCBBCTTTCHHHHTCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred CCEeCCCCEEEhhhcCCCCCCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence 9996 79999999999999999997 6999999999987
No 49
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1
Probab=99.97 E-value=4e-30 Score=194.11 Aligned_cols=90 Identities=29% Similarity=0.527 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHcCCCC--------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccc--cCCcc
Q 048648 55 QQWMRDLKRLQQGAPP--------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMF--HRNDL 124 (182)
Q Consensus 55 ~RL~~El~~l~~~~~~--------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--HPnI~ 124 (182)
+||++|+++++++++. +++|++.|+++|.||+||||+||.|+++|.||++||++||+|+|.|++| ||||+
T Consensus 25 ~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~ 104 (136)
T 2a7l_A 25 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVY 104 (136)
T ss_dssp HHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBC
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCC
Confidence 9999999999988765 4679999999999999999999999999999999999999999999999 99998
Q ss_pred ------------CCCCcccHHHHHHHHHHhhC
Q 048648 125 ------------KWNSDYDVVAIFATIQLMLG 144 (182)
Q Consensus 125 ------------~W~p~~tl~~il~~I~~ll~ 144 (182)
+|+|++|+++||.+|++||.
T Consensus 105 ~~G~ICL~iL~~~WsP~~ti~~vL~sI~slL~ 136 (136)
T 2a7l_A 105 SNGHICLSILTEDWSPALSVQSVCLSIISMLS 136 (136)
T ss_dssp TTCBBCCGGGTTTCCTTSCHHHHHHHHHHHTC
T ss_pred CCCeEEchhcCCCCCCCCcHHHHHHHHHHHhC
Confidence 89999999999999999984
No 50
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Probab=99.96 E-value=2.7e-31 Score=210.19 Aligned_cols=129 Identities=15% Similarity=0.227 Sum_probs=110.3
Q ss_pred cCCCCcHHHHHHHHHHHHHHHcCC---CC------CCCCcceEEEEEecC-CCCCCCC-----------CEEEEEEeeCC
Q 048648 45 NVGGGLKCQLQQWMRDLKRLQQGA---PP------GDDDIMLRNAIIVGL-GGTLFDG-----------GIFKLTLKFTK 103 (182)
Q Consensus 45 ~~~~~~~~~~~RL~~El~~l~~~~---~~------~~~~~~~w~~~i~Gp-~~tpY~g-----------g~f~~~i~fp~ 103 (182)
....++..+.+||++|+++|++++ +. .++|++.|+++|.|| ++|||+| |.|+|+|.||+
T Consensus 20 g~~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~ 99 (186)
T 1zuo_A 20 GAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKD 99 (186)
T ss_dssp ----CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCT
T ss_pred CcccccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCC
Confidence 344566788999999999999877 23 668999999999998 8999998 89999999999
Q ss_pred CCCCCCCeeeeccccccC-Ccc-------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHhhCHHHHHH
Q 048648 104 EYPVKPPVVPFVSGMFHR-NDL-------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLTGGRIDYYK 169 (182)
Q Consensus 104 ~YP~~pP~v~f~t~i~HP-nI~-------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~~d~~~f~~ 169 (182)
+||++||+|+|.|++||| ||+ +|+|++||++||.+|+++|.+|+... .+.+++.+|.+
T Consensus 100 ~YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y~~ 171 (186)
T 1zuo_A 100 NFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQYNL 171 (186)
T ss_dssp TTTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCCCH
T ss_pred CCCCCCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHHhH
Confidence 999999999999999999 587 69999999999999999999886532 45556788888
Q ss_pred HHHHHHHHHhhc
Q 048648 170 KAQRIVELSWKA 181 (182)
Q Consensus 170 ~ar~~~~~~a~~ 181 (182)
.+++++.+++.+
T Consensus 172 ~~~~~~~~~~~~ 183 (186)
T 1zuo_A 172 ARAQQSYNSIVQ 183 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887654
No 51
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Probab=99.96 E-value=3.8e-29 Score=198.00 Aligned_cols=102 Identities=20% Similarity=0.379 Sum_probs=90.1
Q ss_pred CCcHHHHHHHHHHHHHHHcCCCC------CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccC
Q 048648 48 GGLKCQLQQWMRDLKRLQQGAPP------GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHR 121 (182)
Q Consensus 48 ~~~~~~~~RL~~El~~l~~~~~~------~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP 121 (182)
..+..+.+||++|+++|+++++. +++|++.|+++|.||+||||+||+|+++|.||++||++||+|+|.|+ ||
T Consensus 10 ~~~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~ 87 (187)
T 2f4w_A 10 RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NG 87 (187)
T ss_dssp ----CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CS
T ss_pred CCccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cc
Confidence 34457889999999999998776 67899999999999999999999999999999999999999999998 66
Q ss_pred Ccc---------------CCCCcccHHHHHHHHHHhhCCCCCCCh
Q 048648 122 NDL---------------KWNSDYDVVAIFATIQLMLGDPNLYSA 151 (182)
Q Consensus 122 nI~---------------~W~p~~tl~~il~~I~~ll~~p~~~~p 151 (182)
|++ .|+|+++|.+||.+|+++|.+|+++..
T Consensus 88 ~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~g 132 (187)
T 2f4w_A 88 RFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLG 132 (187)
T ss_dssp SBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTT
T ss_pred eeccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCCc
Confidence 664 699999999999999999999988643
No 52
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A
Probab=99.83 E-value=8e-22 Score=151.72 Aligned_cols=103 Identities=11% Similarity=0.092 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCcceEEEEEecCCCCCCCCC----------EEEEEEeeCCCCCCCCCeeeeccc-cc
Q 048648 51 KCQLQQWMRDLKRLQQGAPPGDDDIMLRNAIIVGLGGTLFDGG----------IFKLTLKFTKEYPVKPPVVPFVSG-MF 119 (182)
Q Consensus 51 ~~~~~RL~~El~~l~~~~~~~~~~~~~w~~~i~Gp~~tpY~gg----------~f~~~i~fp~~YP~~pP~v~f~t~-i~ 119 (182)
..-.+||++|++.|.+.....++|+..|.+++.||+||+|+|| .|.+++.||++||.+||+|+|.+. +|
T Consensus 31 ~~w~~RL~eE~k~L~k~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~ 110 (172)
T 2z6o_A 31 ELWVQRLKEEYQSLIRYVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGK 110 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTT
T ss_pred HHHHHHHHHHHHHHHHHhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCC
Confidence 4558999999999999543377799999999999999999999 999999999999999999999998 99
Q ss_pred cCCcc----------------CCCCcccHHHHHHHHHHhhCCCCCCChhhHHHHHHHh
Q 048648 120 HRNDL----------------KWNSDYDVVAIFATIQLMLGDPNLYSAANQQAATMLT 161 (182)
Q Consensus 120 HPnI~----------------~W~p~~tl~~il~~I~~ll~~p~~~~p~n~~a~~~~~ 161 (182)
||||| .|+|.+++..+|.- ....++..|+..+..
T Consensus 111 hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~l--------gl~pwla~eip~lv~ 160 (172)
T 2z6o_A 111 TAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMAL--------GLGPWLAVEIPDLIQ 160 (172)
T ss_dssp CSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHHH--------THHHHHHHHHHHHHH
T ss_pred CCCCCCCCcEechhhccccccccCCccCHHHHHhh--------ccCchhhhhhHHHHH
Confidence 99999 34599999999843 234456667766654
No 53
>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*
Probab=99.56 E-value=1.4e-14 Score=111.69 Aligned_cols=96 Identities=18% Similarity=0.207 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCCC---------CCCCcceEEEEEecCCCCCCCCCE---EEEEEeeCCCCCCCCCeeeecc------
Q 048648 55 QQWMRDLKRLQQGAPP---------GDDDIMLRNAIIVGLGGTLFDGGI---FKLTLKFTKEYPVKPPVVPFVS------ 116 (182)
Q Consensus 55 ~RL~~El~~l~~~~~~---------~~~~~~~w~~~i~Gp~~tpY~gg~---f~~~i~fp~~YP~~pP~v~f~t------ 116 (182)
+|..+|+..+.+.-+. .++....+.+.+.|.-.++|+||. |.+.|.||.+||++||.|.|.+
T Consensus 31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~ 110 (162)
T 3r3q_A 31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN 110 (162)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence 6677888887765554 556666677777777779999998 8899999999999999998865
Q ss_pred -c---cc-cCCcc-----------CCCC-cccHHHHHHHHHHhhCCCCCCC
Q 048648 117 -G---MF-HRNDL-----------KWNS-DYDVVAIFATIQLMLGDPNLYS 150 (182)
Q Consensus 117 -~---i~-HPnI~-----------~W~p-~~tl~~il~~I~~ll~~p~~~~ 150 (182)
+ |+ ||||| +|+| +.++.++|.+|+++|.+|+++.
T Consensus 111 ~~~~~I~~hpnVD~~G~I~lpyL~~W~p~~s~L~~ll~~l~~lf~ep~~d~ 161 (162)
T 3r3q_A 111 TISSSLPIQEYIDSNGWIALPILHAWDPAAMNLIMVVQELMSLLHEPPQDQ 161 (162)
T ss_dssp TSCTTSTHHHHBCTTSBBCCGGGGSCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred ccccccCCCCCCCCCCcEeCcccccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence 1 77 99999 9999 5799999999999999999874
No 54
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4
Probab=99.38 E-value=3.6e-14 Score=107.07 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCcceEEEEEecCCCCCCCCC----------EEEEEEeeCCCCCCCCCeeeeccc-cc
Q 048648 51 KCQLQQWMRDLKRLQQGAPPGDDDIMLRNAIIVGLGGTLFDGG----------IFKLTLKFTKEYPVKPPVVPFVSG-MF 119 (182)
Q Consensus 51 ~~~~~RL~~El~~l~~~~~~~~~~~~~w~~~i~Gp~~tpY~gg----------~f~~~i~fp~~YP~~pP~v~f~t~-i~ 119 (182)
..=..||.+|+..|-+.-..+.++-..|...+.||.||+|.|+ .|++++.||.+||.+||+|+|.+. .+
T Consensus 33 ~~w~~RlkeEy~alI~yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgk 112 (168)
T 3kpa_A 33 DKWTARLKEEYASLITYVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGK 112 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCc
Confidence 4467899999999876443333344568899999999999999 999999999999999999999995 89
Q ss_pred cCCcc---------CCCCccc
Q 048648 120 HRNDL---------KWNSDYD 131 (182)
Q Consensus 120 HPnI~---------~W~p~~t 131 (182)
|||+| .|+|.++
T Consensus 113 t~kmYr~GkICLdIhwkPlW~ 133 (168)
T 3kpa_A 113 TVKMYRGGKICMTTHFFPLWA 133 (168)
T ss_dssp CSSEETTTEECCCTTHHHHHH
T ss_pred CccccCCCcEEeccccchhhH
Confidence 99999 6777654
No 55
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A
Probab=99.06 E-value=7.8e-10 Score=83.79 Aligned_cols=83 Identities=18% Similarity=0.410 Sum_probs=68.9
Q ss_pred HHHHHHHHHcCCCC----------CCCCcceEEEEEecCCCCCCCCCEEEE--EEeeCCCCCCCCCeeeeccc------c
Q 048648 57 WMRDLKRLQQGAPP----------GDDDIMLRNAIIVGLGGTLFDGGIFKL--TLKFTKEYPVKPPVVPFVSG------M 118 (182)
Q Consensus 57 L~~El~~l~~~~~~----------~~~~~~~w~~~i~Gp~~tpY~gg~f~~--~i~fp~~YP~~pP~v~f~t~------i 118 (182)
..+|+..+.+.-+. ...+++.|.++|. .+|+|+.|.+ .|-||++||++||.| |.++ .
T Consensus 25 t~~dv~~vl~~yp~L~p~~~~y~G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~ 99 (146)
T 3obq_A 25 TVRETVNVITLYKDLKPVLDSYGTGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIK 99 (146)
T ss_dssp HHHHHHHHHHHCTTEEEEEEESSSTTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEEC
T ss_pred hHHHHHHHHHhCCCCceEeeeeeCChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEEC
Confidence 34566666655544 4468899999996 5799999985 889999999999999 7766 5
Q ss_pred ccCCcc-----------CCCC-cccHHHHHHHHHHhhC
Q 048648 119 FHRNDL-----------KWNS-DYDVVAIFATIQLMLG 144 (182)
Q Consensus 119 ~HPnI~-----------~W~p-~~tl~~il~~I~~ll~ 144 (182)
.||||| +|++ ..+|.+++..+++.|.
T Consensus 100 ~~~~Vd~~G~i~lpyL~~W~~~~snL~~ll~~l~~~F~ 137 (146)
T 3obq_A 100 TGKHVDANGKIYLPYLHEWKHPQSDLLGLIQVMIVVFG 137 (146)
T ss_dssp CBTTBCTTCBBCCHHHHTCCTTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCEecccccccCCCCCCHHHHHHHHHHHHh
Confidence 899999 9988 7899999999999886
No 56
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.05 E-value=0.0037 Score=45.15 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHcCCCC----CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCccCCCC
Q 048648 53 QLQQWMRDLKRLQQGAPP----GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKWNS 128 (182)
Q Consensus 53 ~~~RL~~El~~l~~~~~~----~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~W~p 128 (182)
...+...|+..|....+. ..+....+.+.+..-.+..-+.-.+.+.|.||++||..||.+...+. .|-+
T Consensus 11 ~~e~q~~EleaL~sIy~d~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~~-------~~l~ 83 (128)
T 2ebm_A 11 YGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFSQ-------ENLE 83 (128)
T ss_dssp HHHHHHHHHHHHHHHCSSSEEECCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEEE-------SSCC
T ss_pred hHHHHHHHHHHHHHHccCceEEccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEcC-------CCCC
Confidence 346678899999876655 22234566666653222222344789999999999999999987553 4767
Q ss_pred cccHHHHHHHHHHhh
Q 048648 129 DYDVVAIFATIQLML 143 (182)
Q Consensus 129 ~~tl~~il~~I~~ll 143 (182)
...+..+...|....
T Consensus 84 ~~~~~~L~~~L~~~~ 98 (128)
T 2ebm_A 84 DNDVSDILKLLALQA 98 (128)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 766677766666555
No 57
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.08 Score=38.49 Aligned_cols=84 Identities=10% Similarity=0.062 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHcCCCC----CCC--------CcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc
Q 048648 51 KCQLQQWMRDLKRLQQGAPP----GDD--------DIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM 118 (182)
Q Consensus 51 ~~~~~RL~~El~~l~~~~~~----~~~--------~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i 118 (182)
.....+...|+..|+...+. ... ....+.+.+.+..+ .-..-.+.+.|.+|++||..||.|...+.
T Consensus 9 ~~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~- 86 (138)
T 2yz0_A 9 DQYYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV- 86 (138)
T ss_dssp HHHHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC-
T ss_pred cchHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC-
Confidence 34446678899999886655 111 24667777763322 21234788999999999999999987654
Q ss_pred ccCCccCCCCcccHHHHHHHHHHh
Q 048648 119 FHRNDLKWNSDYDVVAIFATIQLM 142 (182)
Q Consensus 119 ~HPnI~~W~p~~tl~~il~~I~~l 142 (182)
.|-+...+..+...|...
T Consensus 87 ------~~L~~~~~~~L~~~L~~~ 104 (138)
T 2yz0_A 87 ------QNVMDSQLQMLKSEFKKI 104 (138)
T ss_dssp ------CSCCSHHHHHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHH
Confidence 244444555555555444
No 58
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=96.08 E-value=0.024 Score=40.82 Aligned_cols=82 Identities=15% Similarity=0.070 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCCCC-----CC---CCcceEEEEEecCCCCCCC--CCEEEEEEeeCCCCCCCCCeeeeccccccCCcc
Q 048648 55 QQWMRDLKRLQQGAPP-----GD---DDIMLRNAIIVGLGGTLFD--GGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDL 124 (182)
Q Consensus 55 ~RL~~El~~l~~~~~~-----~~---~~~~~w~~~i~Gp~~tpY~--gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~ 124 (182)
.+...|+..|+...+. .. .....+.+.+..+.+..-+ .-.+.+.|.+|++||..+|.|...+.
T Consensus 11 e~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~~------- 83 (128)
T 2day_A 11 WVLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP------- 83 (128)
T ss_dssp CHHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE-------
T ss_pred HHHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEcC-------
Confidence 3577888888876654 11 2344455555422221111 24788999999999999999987764
Q ss_pred CCCCcccHHHHHHHHHHhh
Q 048648 125 KWNSDYDVVAIFATIQLML 143 (182)
Q Consensus 125 ~W~p~~tl~~il~~I~~ll 143 (182)
.|-+...+..+...|....
T Consensus 84 ~~L~~~~~~~L~~~L~~~~ 102 (128)
T 2day_A 84 RGLSDEQIHTILQVLGHVA 102 (128)
T ss_dssp ESSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 3655555666655555443
No 59
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=95.72 E-value=0.045 Score=42.58 Aligned_cols=80 Identities=15% Similarity=0.246 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCCCC-CCCCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeecccc-ccCCccCCCCcccHH
Q 048648 56 QWMRDLKRLQQGAPP-GDDDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGM-FHRNDLKWNSDYDVV 133 (182)
Q Consensus 56 RL~~El~~l~~~~~~-~~~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~HPnI~~W~p~~tl~ 133 (182)
+|.+|+.++.=+... .++++....+.+..- .|....++|.++.+||.+||.+...-|. ++ + .|+|..++.
T Consensus 5 ~li~Ei~~iGW~~l~~id~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~~~~--~-~w~~~ssL~ 76 (186)
T 3zqs_A 5 SLIEEIGTLGWDKLVYADTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPVPFC--A-SWTPQSSLI 76 (186)
T ss_dssp SHHHHHHHHCGGGEEEECTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSSCCC--C-CCCTTCCHH
T ss_pred HHHHHHHHhCCceeeeecCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCCCcc--c-ccCCCccHH
Confidence 577888887554444 456788888888743 3678999999999999999988766554 22 2 799999998
Q ss_pred HHHHHHHHhh
Q 048648 134 AIFATIQLML 143 (182)
Q Consensus 134 ~il~~I~~ll 143 (182)
+++...+..|
T Consensus 77 ~v~~qF~~~L 86 (186)
T 3zqs_A 77 SIYSQFLAAI 86 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887766665
No 60
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=95.14 E-value=0.5 Score=35.13 Aligned_cols=45 Identities=11% Similarity=0.039 Sum_probs=32.0
Q ss_pred EEEEEEeeCCCCCCCCCeeeeccccccCCccCCCCcccHHHHHHHHHHhhCCC
Q 048648 94 IFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKWNSDYDVVAIFATIQLMLGDP 146 (182)
Q Consensus 94 ~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~W~p~~tl~~il~~I~~ll~~p 146 (182)
.+.+.|.+|.+||..+|.|...+. |-.......+...|...+.+-
T Consensus 76 ~i~L~v~lP~~YP~~~P~i~l~~~--------~l~~~~~~~L~~~L~~~l~~~ 120 (154)
T 2daw_A 76 KIDLQVTMPHSYPYLALQLFGRSS--------ELDRHQQLLLNKGLTSYIGTF 120 (154)
T ss_dssp EEEEEEEECSSTTSSCCEEEEECS--------SSCHHHHHHHHHHHHHHHTTS
T ss_pred eEEEEEEcCCCCCCCCCcEEEEeC--------CCCHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999986553 333344555556666666543
No 61
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=94.98 E-value=0.2 Score=36.14 Aligned_cols=83 Identities=16% Similarity=0.046 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHcCCCC----CCC-------CcceEEEEEecCCC-C-CCCCCEEEEEEeeCCCCCCCCCeeeecccc
Q 048648 52 CQLQQWMRDLKRLQQGAPP----GDD-------DIMLRNAIIVGLGG-T-LFDGGIFKLTLKFTKEYPVKPPVVPFVSGM 118 (182)
Q Consensus 52 ~~~~RL~~El~~l~~~~~~----~~~-------~~~~w~~~i~Gp~~-t-pY~gg~f~~~i~fp~~YP~~pP~v~f~t~i 118 (182)
....+...|+..|+...+. ..+ ....+.+.+. +.+ + .-..-.+.+.|.||++||..||.|.....
T Consensus 10 ~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~~- 87 (137)
T 1ukx_A 10 SYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKNA- 87 (137)
T ss_dssp CHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEEE-
T ss_pred chHHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEecC-
Confidence 3345678888888876654 111 1345666664 322 1 00124689999999999999999987433
Q ss_pred ccCCccCCCCcccHHHHHHHHHHh
Q 048648 119 FHRNDLKWNSDYDVVAIFATIQLM 142 (182)
Q Consensus 119 ~HPnI~~W~p~~tl~~il~~I~~l 142 (182)
.|-+...+..+...|...
T Consensus 88 ------~~L~~~~~~~L~~~L~~~ 105 (137)
T 1ukx_A 88 ------KGLSNESVNLLKSHLEEL 105 (137)
T ss_dssp ------ESSSSSHHHHHHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHH
Confidence 244444444444444433
No 62
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.63 E-value=0.36 Score=34.49 Aligned_cols=79 Identities=13% Similarity=0.016 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCCC------CC---CCcceEEEEEecCCCCCCCCCEEEEEEeeCCCCCCCCCeeeeccccccCCccCC
Q 048648 56 QWMRDLKRLQQGAPP------GD---DDIMLRNAIIVGLGGTLFDGGIFKLTLKFTKEYPVKPPVVPFVSGMFHRNDLKW 126 (182)
Q Consensus 56 RL~~El~~l~~~~~~------~~---~~~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~W 126 (182)
....|+..|+...+. .. .+...+.+.+.. .+..=..-.+.+.|.+|++||..||.+...+ .|
T Consensus 11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~~--------~~ 81 (128)
T 2ebk_A 11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISINS--------EQ 81 (128)
T ss_dssp HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCCC--------SS
T ss_pred HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEEh--------hh
Confidence 466788777764431 11 224577777753 2210012478999999999999999987653 25
Q ss_pred CCcccHHHHHHHHHHhh
Q 048648 127 NSDYDVVAIFATIQLML 143 (182)
Q Consensus 127 ~p~~tl~~il~~I~~ll 143 (182)
-+......+...|....
T Consensus 82 L~~~~~~~l~~~L~~~~ 98 (128)
T 2ebk_A 82 LTRAQCVTVKEKLLEQA 98 (128)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 55555666666665554
No 63
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3
Probab=92.34 E-value=0.35 Score=35.75 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=20.8
Q ss_pred EEEEEEeeCCCCCCCCCeeeeccc
Q 048648 94 IFKLTLKFTKEYPVKPPVVPFVSG 117 (182)
Q Consensus 94 ~f~~~i~fp~~YP~~pP~v~f~t~ 117 (182)
.+.+.|.+|++||..||.+.....
T Consensus 74 ~l~L~v~lP~~YP~~~P~i~l~~~ 97 (152)
T 2dax_A 74 MFSLACILPFKYPAVLPEITVRSV 97 (152)
T ss_dssp EEEEEEEECSSTTSSCCCCEEECT
T ss_pred eEEEEEECCCCCCCCCCeEEEEcc
Confidence 588999999999999999986654
No 64
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=77.68 E-value=0.46 Score=33.65 Aligned_cols=33 Identities=6% Similarity=-0.190 Sum_probs=0.0
Q ss_pred CCCChhhHHHHHHHhhCHHHHHHHHHHHHHHHh
Q 048648 147 NLYSAANQQAATMLTGGRIDYYKKAQRIVELSW 179 (182)
Q Consensus 147 ~~~~p~n~~a~~~~~~d~~~f~~~ar~~~~~~a 179 (182)
....|.+.++|++|+++++.|..+|+.|+.-+|
T Consensus 22 ~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a 54 (108)
T 2cwb_A 22 TTTEAVDAATAEKVFKQYANDNGVDGEWTYDDA 54 (108)
T ss_dssp ---------------------------------
T ss_pred ccCCchhHHHHHHHHhchhccccccccccccCc
Confidence 345689999999999999999999999996555
No 65
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=51.60 E-value=9.8 Score=29.26 Aligned_cols=48 Identities=15% Similarity=0.302 Sum_probs=36.7
Q ss_pred CEEEEEEeeCCCCCCCCCeeeeccc---------cccCCccCCCCcccHHHHHHHHH
Q 048648 93 GIFKLTLKFTKEYPVKPPVVPFVSG---------MFHRNDLKWNSDYDVVAIFATIQ 140 (182)
Q Consensus 93 g~f~~~i~fp~~YP~~pP~v~f~t~---------i~HPnI~~W~p~~tl~~il~~I~ 140 (182)
....+.|.+.+..|...|.++|+-+ .+.-|+..|.|..++.+=|..|-
T Consensus 124 ~~vsl~i~vdP~~P~~lPe~~FlG~~~~v~~lr~~~~~nl~~Wd~~~~i~~NL~~il 180 (186)
T 3zqs_A 124 NNVSINIEVDPRHPTMLPECFFLGADHVVKPLGIKLSRNIHLWDPENSVLQNLKDVL 180 (186)
T ss_dssp TTEEEEEECCTTSTTSCCEEEEEECHHHHHHHHHHHHHHGGGCCTTSCHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCcCCceEEECChHHHHHHHHHHhhhHhhcCCCCCHHHHHHHHH
Confidence 3467888889999999999999954 24555569999998776665553
No 66
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=30.82 E-value=25 Score=29.89 Aligned_cols=55 Identities=9% Similarity=0.066 Sum_probs=41.4
Q ss_pred EEEEEEee-CCCCCCCCCeeeeccc---------cccCCccCCCCcccHHHHHHHHHHhhCCCCC
Q 048648 94 IFKLTLKF-TKEYPVKPPVVPFVSG---------MFHRNDLKWNSDYDVVAIFATIQLMLGDPNL 148 (182)
Q Consensus 94 ~f~~~i~f-p~~YP~~pP~v~f~t~---------i~HPnI~~W~p~~tl~~il~~I~~ll~~p~~ 148 (182)
...+.|.+ .+..|...|.|+|+-+ .+.-|+..|.|..++.+=|..|-.+..=|.+
T Consensus 229 ~vSl~IeV~DP~~Pr~lPe~~FlGpd~~V~~Lr~~l~~Nl~~Wd~d~si~eNL~~IL~i~~fP~p 293 (381)
T 3k1l_B 229 RVYLKLTIADPFACIASMSLKIIGPTEEVARLRHVLSDGLSNWDSEMNIHKNLLRMFDLCYFPMP 293 (381)
T ss_dssp TEEEEEEESCTTSTTTTEEEEEESSHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHHTTCSSCCCC
T ss_pred CeEEEEEeCCCCCCCcCceeEEECChhHhHHHHHHHhhhhhhcCccCCHHHHHHHHhCccccCCC
Confidence 36678888 8889999999999955 2444455999999988888777777544544
No 67
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=24.28 E-value=1.5e+02 Score=19.13 Aligned_cols=22 Identities=14% Similarity=0.175 Sum_probs=15.2
Q ss_pred cceEEEEEecCCCCCCCCCEEEEEEeeCC
Q 048648 75 IMLRNAIIVGLGGTLFDGGIFKLTLKFTK 103 (182)
Q Consensus 75 ~~~w~~~i~Gp~~tpY~gg~f~~~i~fp~ 103 (182)
+..|.|.=. .+|-|++.|.||.
T Consensus 9 p~dW~VsRt-------~dGdYrL~itcpk 30 (76)
T 2rp4_A 9 AAEWNVSRT-------PDGDYRLAITCPN 30 (76)
T ss_dssp SCCCEEECC-------TTTBEEEEEEESC
T ss_pred Cccceeeec-------cCCceEEEEEeCc
Confidence 355666543 2677999999987
Done!