Query 048649
Match_columns 256
No_of_seqs 151 out of 1058
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 11:36:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09903 putative transporter 100.0 2.4E-34 5.3E-39 256.5 23.7 216 8-241 3-224 (314)
2 COG0679 Predicted permeases [G 100.0 9.4E-34 2E-38 252.2 24.2 215 7-239 2-217 (311)
3 TIGR00946 2a69 he Auxin Efflux 100.0 4.3E-34 9.2E-39 255.7 21.0 228 9-250 5-240 (321)
4 PF03547 Mem_trans: Membrane t 100.0 6.8E-30 1.5E-34 233.5 21.4 239 10-251 2-309 (385)
5 KOG2722 Predicted membrane pro 99.7 1.4E-18 3E-23 152.8 6.1 224 12-239 15-305 (408)
6 TIGR00841 bass bile acid trans 96.5 0.053 1.2E-06 47.9 11.9 80 69-151 195-274 (286)
7 COG3329 Predicted permease [Ge 96.0 1 2.2E-05 39.9 18.4 220 12-240 14-268 (372)
8 PF03601 Cons_hypoth698: Conse 95.9 0.77 1.7E-05 41.0 16.5 59 186-250 243-302 (305)
9 PF05982 DUF897: Domain of unk 95.0 1.8 4E-05 38.7 15.4 224 16-254 1-243 (327)
10 TIGR00783 ccs citrate carrier 94.0 0.41 9E-06 43.3 9.1 101 17-118 207-315 (347)
11 PF05684 DUF819: Protein of un 92.3 9 0.0002 35.3 15.8 72 10-82 21-95 (378)
12 COG0385 Predicted Na+-dependen 91.7 3.7 8E-05 36.8 11.7 122 21-149 174-301 (319)
13 PF13593 DUF4137: SBF-like CPA 88.2 8.1 0.00018 34.6 11.2 105 21-129 171-283 (313)
14 COG2855 Predicted membrane pro 85.5 28 0.0006 31.5 17.0 30 208-237 271-300 (334)
15 TIGR00832 acr3 arsenical-resis 81.4 9 0.00019 34.5 8.3 50 78-130 255-304 (328)
16 COG0798 ACR3 Arsenite efflux p 76.9 51 0.0011 29.9 11.3 54 78-134 256-310 (342)
17 PF03390 2HCT: 2-hydroxycarbox 76.7 31 0.00066 32.2 10.2 97 20-117 277-381 (414)
18 PF03812 KdgT: 2-keto-3-deoxyg 73.1 28 0.0006 31.2 8.6 113 7-134 168-284 (314)
19 COG1593 DctQ TRAP-type C4-dica 59.9 1.3E+02 0.0027 27.8 10.4 49 189-241 235-289 (379)
20 TIGR00793 kdgT 2-keto-3-deoxyg 57.6 39 0.00084 30.2 6.5 111 8-133 169-283 (314)
21 COG4389 Site-specific recombin 55.7 24 0.00053 33.3 5.1 49 133-189 612-660 (677)
22 KOG2532 Permease of the major 52.4 46 0.001 31.5 6.7 39 179-217 250-289 (466)
23 TIGR00807 malonate_madL malona 50.8 1.1E+02 0.0024 23.4 7.8 76 15-95 38-118 (125)
24 TIGR00783 ccs citrate carrier 50.3 2E+02 0.0044 26.2 17.3 105 31-135 6-120 (347)
25 TIGR00698 conserved hypothetic 47.4 2.2E+02 0.0048 25.8 15.7 109 125-253 204-313 (335)
26 COG3493 CitS Na+/citrate sympo 44.9 2.5E+02 0.0055 26.1 9.7 90 16-106 292-389 (438)
27 COG2211 MelB Na+/melibiose sym 42.4 3.1E+02 0.0067 26.1 12.2 27 175-201 224-250 (467)
28 PRK12460 2-keto-3-deoxyglucona 41.3 1.1E+02 0.0023 27.6 6.7 44 188-239 169-212 (312)
29 PF03601 Cons_hypoth698: Conse 40.4 55 0.0012 29.2 4.9 59 184-247 25-83 (305)
30 PF13347 MFS_2: MFS/sugar tran 40.1 2.9E+02 0.0063 25.1 12.7 26 176-201 214-239 (428)
31 TIGR00473 pssA CDP-diacylglyce 39.6 1.9E+02 0.0041 22.9 8.0 38 21-59 35-74 (151)
32 COG1183 PssA Phosphatidylserin 37.9 1E+02 0.0023 26.4 6.0 38 24-62 53-92 (234)
33 PF10766 DUF2592: Protein of u 36.9 65 0.0014 19.5 3.2 25 177-201 3-27 (41)
34 PRK12460 2-keto-3-deoxyglucona 36.7 2.9E+02 0.0064 24.8 8.8 74 18-96 170-246 (312)
35 PLN03159 cation/H(+) antiporte 35.7 5.1E+02 0.011 26.6 11.6 33 34-66 311-343 (832)
36 PF03817 MadL: Malonate transp 35.6 2E+02 0.0044 22.0 7.9 76 15-94 38-117 (125)
37 PF05684 DUF819: Protein of un 30.9 4.3E+02 0.0092 24.3 12.2 126 14-151 240-370 (378)
38 COG2991 Uncharacterized protei 30.4 56 0.0012 22.6 2.5 23 7-29 4-26 (77)
39 TIGR00383 corA magnesium Mg(2+ 28.6 1.2E+02 0.0026 26.7 5.2 20 46-65 264-283 (318)
40 COG5505 Predicted integral mem 27.8 4.6E+02 0.01 23.7 11.6 135 14-154 31-173 (384)
41 PF07690 MFS_1: Major Facilita 26.5 4E+02 0.0088 22.7 9.5 21 9-29 38-58 (352)
42 COG0598 CorA Mg2+ and Co2+ tra 25.9 1.2E+02 0.0025 27.1 4.6 26 46-71 268-296 (322)
43 PRK11085 magnesium/nickel/coba 24.5 2.3E+02 0.0051 25.4 6.2 20 46-65 262-281 (316)
44 COG1906 Uncharacterized conser 23.0 5.8E+02 0.013 23.3 9.4 21 115-135 315-336 (388)
45 COG5546 Small integral membran 21.9 1.2E+02 0.0027 21.1 3.0 35 184-218 8-45 (80)
46 PRK09546 zntB zinc transporter 21.2 2.4E+02 0.0052 25.0 5.7 20 46-65 270-289 (324)
No 1
>PRK09903 putative transporter YfdV; Provisional
Probab=100.00 E-value=2.4e-34 Score=256.52 Aligned_cols=216 Identities=19% Similarity=0.291 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHhccCCCCC-C-cHhHHHHHHHHHHHHHHH
Q 048649 8 YKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFN-L-NYRLIGADAISKLIIVFV 85 (256)
Q Consensus 8 ~~~~~~ilpi~lli~lG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~~~~~-l-~~~~i~~~~~~~l~~~~~ 85 (256)
...++.++|+|+++++||+++| +|+++||+.+.++|+++|+++||++|+++.+.+.++ . ++.......++.+..+++
T Consensus 3 ~~~~~~ilpif~ii~lG~~~~r-~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (314)
T PRK09903 3 TFFIGDLLPIIVIMLLGYFSGR-RETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFF 81 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 4678899999999999999999 799999999999999999999999999999886554 2 455554445555666666
Q ss_pred HHHHHHHh-cCCcchhhhhhhhhccccccccchhhhhhhhhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 048649 86 LAFWAMCS-KNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQM---AVDLVVQSSVLQSILWLTIFLFVLEYRRSARI 161 (256)
Q Consensus 86 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 161 (256)
++...|.. +++ .++.....+. ++++|+||+|+|+++++||++ ++.++.. ...++++.|+++++.++..+.++
T Consensus 82 ~~~~~~~~~~~~-~~~~~~~~~~-~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~~-~~~~~~~~~~~g~~~~~~~~~~~- 157 (314)
T PRK09903 82 SWFGCYKFFKRT-HAEAAVCALI-AGSPTIGFLGFAVLDPIYGDSVSTGLVVAII-SIIVNAITIPIGLYLLNPSSGAD- 157 (314)
T ss_pred HHHHHHHHhcCC-cchhhHhhhh-hcCCCcccccHHHHHHHcCchhhhhhHHHHH-HHHHHHHHHHHHHHHHccccccc-
Confidence 66666543 433 3333334554 778999999999999999999 4544444 44578899999999887543211
Q ss_pred ccccCCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHhhHHHHHHHHHhHHhhhccc
Q 048649 162 DLEEGHGRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEK 241 (256)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~i~~nP~i~a~i~Gl~~~~~~~~~~i~lP~~l~~~l~~lg~~~~plaL~~iG~~L~~~~~ 241 (256)
++.+ ..++.+|+++|||+++|+++|++++.+ |+++|++++++++++|++++|++|+++|++|++.+.
T Consensus 158 ------~~~~---~~~~~l~~~~~nP~iia~~~gl~~~l~----~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~ 224 (314)
T PRK09903 158 ------GKKN---SNLSALISAAKEPVVWAPVLATILVLV----GVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKF 224 (314)
T ss_pred ------cccc---hHHHHHHHHHhchHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 0111 134667899999999999999999999 999999999999999999999999999999987643
No 2
>COG0679 Predicted permeases [General function prediction only]
Probab=100.00 E-value=9.4e-34 Score=252.22 Aligned_cols=215 Identities=21% Similarity=0.369 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHhccCCCCCC-cHhHHHHHHHHHHHHHHH
Q 048649 7 VYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFNL-NYRLIGADAISKLIIVFV 85 (256)
Q Consensus 7 ~~~~~~~ilpi~lli~lG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~~~~~l-~~~~i~~~~~~~l~~~~~ 85 (256)
|..+++.++|+++++++||+++| .+.+|++..+.++++++|+++||++|+++.+.+.++. +...+.....+++..++.
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~r-~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLKR-FGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFL 80 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-hcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999 7999999999999999999999999999999988764 666666666777777777
Q ss_pred HHHHHHHhcCCcchhhhhhhhhccccccccchhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccc
Q 048649 86 LAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARIDLEE 165 (256)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 165 (256)
.+.+.|..+++++++.....++ +.++|++|+|+|+....|||+++.++++++..++...++.+.+.++..++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~~----- 154 (311)
T COG0679 81 LALIGRFLFKLDKRETVIFALA-SAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGGT----- 154 (311)
T ss_pred HHHHHHHHhccchhhHHHHHHH-HHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----
Confidence 7777777655544444445555 8999999999999999999999999999999999999999999988776531
Q ss_pred CCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHhhHHHHHHHHHhHHhhhc
Q 048649 166 GHGRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQ 239 (256)
Q Consensus 166 ~~~~~~~~~~~~~~~~~i~~nP~i~a~i~Gl~~~~~~~~~~i~lP~~l~~~l~~lg~~~~plaL~~iG~~L~~~ 239 (256)
+ +..++..|++++||+++|.++|++++.. ++++|++++++++++|++++|++|+++|++|+..
T Consensus 155 ---~----~~~~~~~~~~~~nP~i~a~i~g~~~~~~----~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~ 217 (311)
T COG0679 155 ---N----KSLLSVLKKLLTNPLIIALILGLLLNLL----GISLPAPLDTAVDLLASAASPLALIALGLSLAFL 217 (311)
T ss_pred ---h----hHHHHHHHHHHhCcHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchh
Confidence 1 1257788999999999999999999999 9999999999999999999999999999999873
No 3
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=100.00 E-value=4.3e-34 Score=255.68 Aligned_cols=228 Identities=22% Similarity=0.296 Sum_probs=176.8
Q ss_pred HHHHHHHHHHHHHHHhHhh-hhhccccChhhhHHHHHHHHHHHHHHHHHHHhccCCCC--CC-cHhHHHHHHHHHHHHHH
Q 048649 9 KVVEAMVPLYFALMLGYGS-VKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPF--NL-NYRLIGADAISKLIIVF 84 (256)
Q Consensus 9 ~~~~~ilpi~lli~lG~~~-~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~~~~--~l-~~~~i~~~~~~~l~~~~ 84 (256)
.+++.++|+++++++||++ +| +|++|||+.+.++|+++|+++||++|+++.+.+.+ +. .+........+....++
T Consensus 5 ~~~~~ilpv~~ii~lG~~~~~r-~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (321)
T TIGR00946 5 VILETVLPILVVILLGYILGKR-FGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFSGSYA 83 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999 78 79999999999999999999999999999987664 22 34444333345556677
Q ss_pred HHHHHHH-HhcCCcchhhhhhhhhccccccccchhhhhhhhhcCCch---hHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 048649 85 VLAFWAM-CSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMA---VDLVVQSSVLQSILWLTIFLFVLEYRRSAR 160 (256)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 160 (256)
+++..+| ..+++ .++.....++ +.++|++|+|+|+++.+|||++ ..++..++..+++..|++++.+.+..+.++
T Consensus 84 l~~~~~~~~~~~~-~~~~~~~~~~-~~~~N~~~~GlPl~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (321)
T TIGR00946 84 LIWLITKPLFKAD-YGKLSGFLLV-SALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLFLVSEDGAGG 161 (321)
T ss_pred HHHHHHHHHHhcc-cchhhHHHHH-hhhccceeehHHHHHHHhcccchhhhHHHHHHHhccchhHHHHHHHHhccccccc
Confidence 7777788 44444 3343445555 8999999999999999999999 667777777888889999987654332100
Q ss_pred cccccCCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHhhHHHHHHHHHhHHhhhcc
Q 048649 161 IDLEEGHGRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQE 240 (256)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~i~~nP~i~a~i~Gl~~~~~~~~~~i~lP~~l~~~l~~lg~~~~plaL~~iG~~L~~~~ 240 (256)
++ ++.+.++..++.+|++++||+++|+++|++++.+ |+++|++++++++.+|++++|++|+++|++++..+
T Consensus 162 ~~-----~~~~~~~~~~~~~~~~~~nP~iia~i~Gl~~~~~----~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~ 232 (321)
T TIGR00946 162 EG-----SGESTRLMLIFVWKKLIKFPPLWAPLLSVILSLV----GFKMPGLILKSISILSGATTPMALFSLGLALSPRK 232 (321)
T ss_pred cc-----cchhHHHHHHHHHHHHHhCCChHHHHHHHHHHHH----hhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhh
Confidence 00 0112223345678999999999999999999999 99999999999999999999999999999997543
Q ss_pred ceeeechhHH
Q 048649 241 KLIACGPKLT 250 (256)
Q Consensus 241 ~~~~~~~~~~ 250 (256)
.++.++..
T Consensus 233 --~~~~~~~~ 240 (321)
T TIGR00946 233 --IKLGVRDA 240 (321)
T ss_pred --hccChHHH
Confidence 34444433
No 4
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.97 E-value=6.8e-30 Score=233.47 Aligned_cols=239 Identities=22% Similarity=0.322 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHhccCC-CCC-CcHhHHHH-HHHHHHHHHHHH
Q 048649 10 VVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVD-PFN-LNYRLIGA-DAISKLIIVFVL 86 (256)
Q Consensus 10 ~~~~ilpi~lli~lG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~~-~~~-l~~~~i~~-~~~~~l~~~~~~ 86 (256)
+++.++|+++++++||+++| +|++++++.+.++++++|+++||++|.++.+.+ .++ .+++++.. ..+..++.++++
T Consensus 2 v~~~i~~i~~ii~~G~~~~~-~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLGR-FGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLG 80 (385)
T ss_pred cHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999 699999999999999999999999999999865 333 35544433 234444555566
Q ss_pred HHHHHHhcCCcchhhhhhhhhccccccccchhhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccc----
Q 048649 87 AFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARID---- 162 (256)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---- 162 (256)
+++.|+.+.++.++ .....+ ++++|++++|+|+++++||+++..|+.+++..+++..|+++..+++..+++++.
T Consensus 81 ~~~~~~~~~~~~~~-~~~~~~-~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~ 158 (385)
T PF03547_consen 81 FLLSRLFRLPKEWR-GVFVLA-ASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEE 158 (385)
T ss_pred HHHHHhcCCCcccc-eEEEec-ccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhccccccccccccc
Confidence 66777555442322 333343 789999999999999999999999999999999999999999988765432110
Q ss_pred -----------c-------ccCC-----------------------------C----C-----------ChhHHHHHHHH
Q 048649 163 -----------L-------EEGH-----------------------------G----R-----------PSFWHLMKIVW 180 (256)
Q Consensus 163 -----------~-------~~~~-----------------------------~----~-----------~~~~~~~~~~~ 180 (256)
. ++++ + + ...++..++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (385)
T PF03547_consen 159 PSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVSTSPSPSNSTGAEQKSSNSTRKKLKKSI 238 (385)
T ss_pred ccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhccCCcccccchhhhhhhhhHHHHHHHHH
Confidence 0 0000 0 0 00112234567
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHhhHHHHHHHHHhHHhhhccceeeechhHHh
Q 048649 181 PKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTV 251 (256)
Q Consensus 181 ~~i~~nP~i~a~i~Gl~~~~~~~~~~i~lP~~l~~~l~~lg~~~~plaL~~iG~~L~~~~~~~~~~~~~~~ 251 (256)
++.++||+++|.++|+++++.+....+.+|+++.++++.+|++++|++|+++|+++++.++...|+.+...
T Consensus 239 ~~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~ 309 (385)
T PF03547_consen 239 LKLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSI 309 (385)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHH
Confidence 88899999999999999999933333334499999999999999999999999999987766677777653
No 5
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=99.75 E-value=1.4e-18 Score=152.78 Aligned_cols=224 Identities=14% Similarity=0.176 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHhHhhhhhc--cccChhhhHHHHHHHHHHHHHHHHHHHhccC-CCCC-CcHhHHHHH-HHHHHHHHHHH
Q 048649 12 EAMVPLYFALMLGYGSVKWW--KIIAPEECAAVNRFVCYFTLPLFTIEFTTQV-DPFN-LNYRLIGAD-AISKLIIVFVL 86 (256)
Q Consensus 12 ~~ilpi~lli~lG~~~~r~~--~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~-~~~~-l~~~~i~~~-~~~~l~~~~~~ 86 (256)
..++.++++-.+||++.+ . ++++++.+|.+|++++|++.||++|..+.+. +.++ ++|+++.+. .+...+..+++
T Consensus 15 ~pvlqvl~i~~~G~~lA~-~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVnv~Lt~~ig~liG 93 (408)
T KOG2722|consen 15 MPVLQVLLITLVGFLLAS-DYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVNVGLTFIIGSLIG 93 (408)
T ss_pred ccHHHHHHHHHHHHHHhc-cccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 578889999999998876 5 9999999999999999999999999999885 5666 488888654 45666777888
Q ss_pred HHHHHHhcCCcchhhhhhhhhccccccccchhhhhhhhh-------cCCc------hhHHHHHHHHHHHHHHHHHHHHHH
Q 048649 87 AFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPM-------YGQM------AVDLVVQSSVLQSILWLTIFLFVL 153 (256)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l-------~G~~------~~~~~~~~~~~~~~~~~~~~~~l~ 153 (256)
|++.|..|.++..+..+. +|+.++|.+++.+.++.++ ||+. |+.|+++......+..|++++-++
T Consensus 94 ~lv~~I~rppp~~~~fii--a~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~il~wty~Y~~~ 171 (408)
T KOG2722|consen 94 WLVVKILRPPPQLRGFII--ACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQILRWTYVYRML 171 (408)
T ss_pred HHHhheecCChhhcCeEE--EEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhhEEEEEEeeee
Confidence 888898877655443333 3589999999999999999 4532 678888888888888888887432
Q ss_pred hhhhcc----------------------cccccc------------C------CCCCh-hH---HHHHHHHHHHhhchhH
Q 048649 154 EYRRSA----------------------RIDLEE------------G------HGRPS-FW---HLMKIVWPKMAKNPNS 189 (256)
Q Consensus 154 ~~~~~~----------------------~~~~~~------------~------~~~~~-~~---~~~~~~~~~i~~nP~i 189 (256)
.....+ +++.|+ + +++.. +| ...+..+|+++ +|+.
T Consensus 172 ~~p~~~~~~~~~~~~Ve~~~~~~~~~s~e~~~~~~~k~~ll~~~en~~~~~~g~~~~~~~~~~~~~~~~~L~~i~-~Ppt 250 (408)
T KOG2722|consen 172 LPPNLELMSALKESPVEALLESVPQPSVESDEDSTCKTLLLASKENRNNQVVGREGKVKRRSVSLSEKVILKEIF-APPT 250 (408)
T ss_pred cCCchhhhhcCChhhhhhhhhccCCCCcccccccccccccccccccCCCceeeccccceEEEeehhHHhhHHHhc-CchH
Confidence 221100 000000 0 00100 01 12345556654 9999
Q ss_pred HHHHHHHHHHHhhhhcC----CCCc-HHHHHHHHHHHhhHHHHHHHHHhHHhhhc
Q 048649 190 YACILGLAWAFVAHRWH----LKMP-SIIEGSILIMSRAGTGTAMFSMGIFMALQ 239 (256)
Q Consensus 190 ~a~i~Gl~~~~~~~~~~----i~lP-~~l~~~l~~lg~~~~plaL~~iG~~L~~~ 239 (256)
+|.++|+++...+.-+. -.-| +.+.++++.+|+.++|+.++++|.+|.+.
T Consensus 251 ia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g 305 (408)
T KOG2722|consen 251 IAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQG 305 (408)
T ss_pred HHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccC
Confidence 99999999987743111 1112 58899999999999999999999999753
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.47 E-value=0.053 Score=47.85 Aligned_cols=80 Identities=9% Similarity=-0.007 Sum_probs=50.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhhhhccccccccchhhhhhhhhcCCchhHHHHHHHHHHHHHHHHH
Q 048649 69 YRLIGADAISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAVDLVVQSSVLQSILWLTI 148 (256)
Q Consensus 69 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~ 148 (256)
+.......+-.++.|.+++.++|..+.+..++.+ .++. +..-|++ +|+++....|+++....+..+.+.+++....+
T Consensus 195 ~~~~~~~~ll~~~~~~~g~~~a~~~~l~~~~~~t-~~~~-~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~ 271 (286)
T TIGR00841 195 PLLLLVGILLPLAGFLLGYLLAKLAGLPWARCRT-ISIE-VGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLAF 271 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHhhhee-eeee-eecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 3333333445566678888888876554222322 3454 6778887 99999999998666555666666665555444
Q ss_pred HHH
Q 048649 149 FLF 151 (256)
Q Consensus 149 ~~~ 151 (256)
+.+
T Consensus 272 a~~ 274 (286)
T TIGR00841 272 ALL 274 (286)
T ss_pred HHH
Confidence 433
No 7
>COG3329 Predicted permease [General function prediction only]
Probab=96.02 E-value=1 Score=39.93 Aligned_cols=220 Identities=12% Similarity=0.038 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHhccC---CCCCCcHhHHHHHHHHHHHHHHHHHH
Q 048649 12 EAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQV---DPFNLNYRLIGADAISKLIIVFVLAF 88 (256)
Q Consensus 12 ~~ilpi~lli~lG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~---~~~~l~~~~i~~~~~~~l~~~~~~~~ 88 (256)
|..-|..+....|.+..- .| -|-+.-+.+.+-.....+=|.=|+.=.+. ++++.-.....+..++.++.+...+.
T Consensus 14 nL~sP~llFf~~Gmlia~-~k-sdl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~ 91 (372)
T COG3329 14 NLLSPTLLFFILGMLIAA-FK-SDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFL 91 (372)
T ss_pred hhccchHHHHHHHHHHHH-Hh-ccccCchHHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888887654 23 33344455555555555555555543232 23322223333444555555555555
Q ss_pred HHHHhcCCcchhhhhhhhhccccccccchhhhhhhhhcCCchh---HHHHHHHHHHHHHHHHHHHHHHhhhhccccc---
Q 048649 89 WAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAV---DLVVQSSVLQSILWLTIFLFVLEYRRSARID--- 162 (256)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--- 162 (256)
+.|+.+-|.....+ .+ ..|+...-.-+.-..+...+.+. .|+.....+.-+.-..+++.+.+.+..++.+
T Consensus 92 l~kl~~vdtvdaaA---~a-g~yGsvS~~Tfaaa~t~Lee~giayeaym~A~lalMeiPallval~l~~~y~~~~k~s~a 167 (372)
T COG3329 92 LRKLPKVDTVDAAA---TA-GTYGSVSAVTFAAAVTFLEESGIAYEAYMPAMLALMEIPALLVALVLANIYLNDEKRSAA 167 (372)
T ss_pred HHHccccchHHHHH---HH-hhccchhHHHHHHHHHHHHHcCccHHHHHHHHHHHhhchHHHHHHHHHHHHHhccccccc
Confidence 56655555222222 22 45666655555555555544433 3443333332222223344443322111111
Q ss_pred -----------ccc------C---------CCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCCCcHHHHHH
Q 048649 163 -----------LEE------G---------HGRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLKMPSIIEGS 216 (256)
Q Consensus 163 -----------~~~------~---------~~~~~~~~~~~~~~~~i~~nP~i~a~i~Gl~~~~~~~~~~i~lP~~l~~~ 216 (256)
.|. + +...+.+-..|+.++..+.||-+...+.|+++.+.. |.+=-+.+.+.
T Consensus 168 a~~~s~~~vA~~e~g~~~d~~ssr~~~~~~~~~ed~~v~~~ell~Esflnpal~lllggl~iGlit---Ge~g~~vl~~F 244 (372)
T COG3329 168 AEAHSKQLVAAGEYGDQTDLASSRQEYLSPQWGEDNRVKIWELLQESFLNPALVLLLGGLAIGLIT---GEQGESVLKPF 244 (372)
T ss_pred cccccccchhhcccCchhhhhhhhhhhcccccCcccchhhHHHHHHHHcCchHHHHHHHHHHhhee---ccCchhhhhhh
Confidence 000 0 001112234578899999999999999999998873 33333445556
Q ss_pred HHHHHhhHHHHHHHHHhHHhhhcc
Q 048649 217 ILIMSRAGTGTAMFSMGIFMALQE 240 (256)
Q Consensus 217 l~~lg~~~~plaL~~iG~~L~~~~ 240 (256)
.+-+=+-..-+-|+.+|+.-.++.
T Consensus 245 ~~~lFqGvL~lflL~MGm~A~rrl 268 (372)
T COG3329 245 FDPLFQGVLCLFLLDMGMTAGRRL 268 (372)
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHH
Confidence 666667778888889999876543
No 8
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.94 E-value=0.77 Score=40.99 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=42.1
Q ss_pred ch-hHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHhhHHHHHHHHHhHHhhhccceeeechhHH
Q 048649 186 NP-NSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLT 250 (256)
Q Consensus 186 nP-~i~a~i~Gl~~~~~~~~~~i~lP~~l~~~l~~lg~~~~plaL~~iG~~L~~~~~~~~~~~~~~ 250 (256)
-| .+++.++..+++-. ..+|+.+.+.++.+++...-++|..+|.+.+..+ ..+.|.+..
T Consensus 243 ~P~FvlgFl~~~~l~s~-----~~~~~~~~~~~~~~s~~~~~~A~aaiGl~~~~~~-l~~~G~kpl 302 (305)
T PF03601_consen 243 FPWFVLGFLAASLLNSL-----GLLPAAVVSALKSLSKWLFALAMAAIGLSTNFKD-LKQVGWKPL 302 (305)
T ss_pred cCHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH-HHhcCccce
Confidence 44 45666666666543 3467888999999999999999999999986433 344555543
No 9
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=95.03 E-value=1.8 Score=38.74 Aligned_cols=224 Identities=15% Similarity=0.112 Sum_probs=111.7
Q ss_pred HHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHH---hccCCCCCCcHhHHHHHHHHHHHHHHHHHHHHHH
Q 048649 16 PLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEF---TTQVDPFNLNYRLIGADAISKLIIVFVLAFWAMC 92 (256)
Q Consensus 16 pi~lli~lG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~---~~~~~~~~l~~~~i~~~~~~~l~~~~~~~~~~~~ 92 (256)
|..+...+|.++.. .| -|-+.-+.+.|++--+.+=+.=++. +.+.+++++......+..++.++-. .++.+-|.
T Consensus 1 P~vLFF~LG~~A~~-~k-SdL~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~liPl-~~~~iLr~ 77 (327)
T PF05982_consen 1 PVVLFFILGIIAAL-LK-SDLEIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGILIPL-IAFPILRR 77 (327)
T ss_pred CchHHHHHHHHHHH-Hc-CCCcCChhHHHHHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45566777887754 23 3445556777776666665555553 2333333322223333333333332 33333343
Q ss_pred -hcCCcchhhhhhhhhccccccccchhhhhhhhhcCCchh---HHHHHHHHHHHHHHHHHHHHHHhhhhccccc---ccc
Q 048649 93 -SKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAV---DLVVQSSVLQSILWLTIFLFVLEYRRSARID---LEE 165 (256)
Q Consensus 93 -~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~ 165 (256)
.|-+ ..++. +.+ +.|+...-.-+....+...++++ .|...+....-..--.+++.+.+..+.++.+ .++
T Consensus 78 ~~~l~-~~daa--AiA-AhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alME~PAIival~L~~~~~~~~~~~~~~~~ 153 (327)
T PF05982_consen 78 LGKLD-RADAA--AIA-AHYGSVSAVTFAAALAFLESQGISYEGYMVALLALMESPAIIVALLLARLFSRKQAAGATASS 153 (327)
T ss_pred ccCCC-hhhHH--HHH-HHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHHhhhHHHHHHHHHHHHhccccccccCCc
Confidence 3434 22322 233 56777666666666666654444 3444444333333344566665443222110 000
Q ss_pred -------CCCCChhHHHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCC-CcHHHHHHHHHHHhhHHHHHHHHHhHHhh
Q 048649 166 -------GHGRPSFWHLMKIVWPKMAKNPNSYACILGLAWAFVAHRWHLK-MPSIIEGSILIMSRAGTGTAMFSMGIFMA 237 (256)
Q Consensus 166 -------~~~~~~~~~~~~~~~~~i~~nP~i~a~i~Gl~~~~~~~~~~i~-lP~~l~~~l~~lg~~~~plaL~~iG~~L~ 237 (256)
++++.+ +++.+++.++|+-+.-.+.|+++.+.....+.+ +-++..+.++ -..-+-|+-+|+.=.
T Consensus 154 ~~~~~~~~~~~~~----~~~~l~E~l~~~sv~LLlGgliIG~~~g~~g~~~i~pf~~~lF~----G~L~lFLLeMGl~A~ 225 (327)
T PF05982_consen 154 TRVGAGSGHEGIS----WGELLHESLTNKSVVLLLGGLIIGFLAGPEGVESIKPFFVDLFK----GVLCLFLLEMGLVAA 225 (327)
T ss_pred ccccccccccccc----HHHHHHHHHcCchHHHHHHHHHHhheeCccchhhccchhhccHH----HHHHHHHHHhhHHHH
Confidence 112222 688899999999999999999998873322221 2123333333 333344444454444
Q ss_pred hc-cceeeechhHHhHhh
Q 048649 238 LQ-EKLIACGPKLTVFGM 254 (256)
Q Consensus 238 ~~-~~~~~~~~~~~~~~~ 254 (256)
++ ++.-+.|+....+|.
T Consensus 226 ~rL~~l~~~g~~li~Fgi 243 (327)
T PF05982_consen 226 RRLRDLRKVGWFLIAFGI 243 (327)
T ss_pred HhhHHHHhhhHHHHHHHH
Confidence 33 233344666555554
No 10
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=94.00 E-value=0.41 Score=43.29 Aligned_cols=101 Identities=9% Similarity=0.040 Sum_probs=66.7
Q ss_pred HHHHHHHhHhhhhhccccChhh---hHHHHHHHHHHHHHHHHH-HHhccCCCCC----CcHhHHHHHHHHHHHHHHHHHH
Q 048649 17 LYFALMLGYGSVKWWKIIAPEE---CAAVNRFVCYFTLPLFTI-EFTTQVDPFN----LNYRLIGADAISKLIIVFVLAF 88 (256)
Q Consensus 17 i~lli~lG~~~~r~~~~~~~~~---~~~l~~lv~~v~lP~lif-~~~~~~~~~~----l~~~~i~~~~~~~l~~~~~~~~ 88 (256)
...++.+|.+++. .|+++++- .+...|++.+..++.++. .++..+|+++ +++..+.....+.+...+.+++
T Consensus 207 ~v~mII~~vi~k~-~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l 285 (347)
T TIGR00783 207 YAFMILIAAALKA-FGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF 285 (347)
T ss_pred HHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence 5678889999988 89999854 455666666666666665 5777777765 2455555444455555566777
Q ss_pred HHHHhcCCcchhhhhhhhhccccccccchh
Q 048649 89 WAMCSKNESCYSWCITNFSLCTLTNSLVVG 118 (256)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG 118 (256)
++|+.+--|.+.+...+++.+..+.+|.++
T Consensus 286 vGKllG~YPiE~aItagLC~~~~GGtGDva 315 (347)
T TIGR00783 286 LGKLMGMYPVESAITAGLCNSGMGGTGDVA 315 (347)
T ss_pred HHHHhCCChHHHHHHHhhhccCCCCCCcee
Confidence 899887765555444455445666666664
No 11
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=92.35 E-value=9 Score=35.28 Aligned_cols=72 Identities=19% Similarity=0.157 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHhccCCCCC---CcHhHHHHHHHHHHHH
Q 048649 10 VVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFN---LNYRLIGADAISKLII 82 (256)
Q Consensus 10 ~~~~ilpi~lli~lG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~~~~~---l~~~~i~~~~~~~l~~ 82 (256)
.+..+-|..+.+.+|.++.. .|++|.+..+...+.+..+.+|..++.-+.+.|+.+ ...+.+..+.++...+
T Consensus 21 ~f~~l~~~vl~~~~~~~lsn-lgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~ 95 (378)
T PF05684_consen 21 FFKYLPGAVLCYLLGMLLSN-LGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGT 95 (378)
T ss_pred hHhhcCHHHHHHHHHHHHHH-CCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHH
Confidence 45677788899999999998 899955556678899999999999999999998775 3566666665544443
No 12
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=91.74 E-value=3.7 Score=36.81 Aligned_cols=122 Identities=12% Similarity=0.050 Sum_probs=64.1
Q ss_pred HHHhHhhhhhccccChhhhHHHHH---HHHHHHHHHHHHHHhccCC--CCCCcHhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 048649 21 LMLGYGSVKWWKIIAPEECAAVNR---FVCYFTLPLFTIEFTTQVD--PFNLNYRLIGADAISKLIIVFVLAFWAMCSKN 95 (256)
Q Consensus 21 i~lG~~~~r~~~~~~~~~~~~l~~---lv~~v~lP~lif~~~~~~~--~~~l~~~~i~~~~~~~l~~~~~~~~~~~~~~~ 95 (256)
+.+|-.++++ ++ +..+...+ .+-...+=+.++...+... ..+.......+..+-..+.+..+|..+|..+.
T Consensus 174 ~~LG~~~r~~---~~-~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~gy~~ar~~g~ 249 (319)
T COG0385 174 FVLGQLLRPL---LP-KWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYFGARLLGF 249 (319)
T ss_pred HHHHHHHHHH---HH-HHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6677777552 22 22222222 2334444444444444331 11112222222233445567788888998765
Q ss_pred CcchhhhhhhhhccccccccchhhhhhhhhcC-CchhHHHHHHHHHHHHHHHHHH
Q 048649 96 ESCYSWCITNFSLCTLTNSLVVGVPLLKPMYG-QMAVDLVVQSSVLQSILWLTIF 149 (256)
Q Consensus 96 ~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G-~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
++..+.+ .++. ...-|.+ .|.|+....++ ++...+..++...|++....++
T Consensus 250 ~~a~~it-i~ie-~g~qn~~-lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la 301 (319)
T COG0385 250 DKADEIT-IAIE-GGMQNLG-LGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLA 301 (319)
T ss_pred Chhheee-EEEe-eccccHH-HHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 5333322 3453 6667764 89999999556 4445566677777765443333
No 13
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=88.24 E-value=8.1 Score=34.56 Aligned_cols=105 Identities=15% Similarity=0.149 Sum_probs=53.6
Q ss_pred HHHhHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHhccC---CC-CCCcHhHHHHHHHHHHH----HHHHHHHHHHH
Q 048649 21 LMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQV---DP-FNLNYRLIGADAISKLI----IVFVLAFWAMC 92 (256)
Q Consensus 21 i~lG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~---~~-~~l~~~~i~~~~~~~l~----~~~~~~~~~~~ 92 (256)
..+|-.++|+.+-.-+. .+...+.+-...+-..++.++.+. +. ++.+...+......... .+.+++..+|.
T Consensus 171 ~~~Gq~~r~~~~~~~~~-~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~r~ 249 (313)
T PF13593_consen 171 LVLGQLLRRWVPKWVAR-HKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLVLGWLAARL 249 (313)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67788876632211112 234455556667777777766554 22 22333222221111112 22344556676
Q ss_pred hcCCcchhhhhhhhhccccccccchhhhhhhhhcCCc
Q 048649 93 SKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQM 129 (256)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~ 129 (256)
.+-+++++ ....+ +.-..+.-.|.|+...+|++.
T Consensus 250 ~~~~~~d~-iA~~F--~gs~Ksl~~gvpl~~~lf~~~ 283 (313)
T PF13593_consen 250 LGFSRPDR-IAVLF--CGSQKSLALGVPLASILFPGH 283 (313)
T ss_pred cCCChhhE-EEEEE--EcCcCcchhHHHHHHHHcccc
Confidence 54332222 11234 344666789999999999875
No 14
>COG2855 Predicted membrane protein [Function unknown]
Probab=85.49 E-value=28 Score=31.48 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=27.9
Q ss_pred CCcHHHHHHHHHHHhhHHHHHHHHHhHHhh
Q 048649 208 KMPSIIEGSILIMSRAGTGTAMFSMGIFMA 237 (256)
Q Consensus 208 ~lP~~l~~~l~~lg~~~~plaL~~iG~~L~ 237 (256)
.+|+.+.+.++.++....-.+|-++|.+.+
T Consensus 271 ~iP~~~~~~~~~lst~ll~~aMaAlGL~t~ 300 (334)
T COG2855 271 LIPAEVVSALVTLSTFLLAMAMAALGLTTH 300 (334)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 489999999999999999999999999875
No 15
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=81.38 E-value=9 Score=34.51 Aligned_cols=50 Identities=12% Similarity=0.091 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhhhhhhhhccccccccchhhhhhhhhcCCch
Q 048649 78 SKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMA 130 (256)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~~ 130 (256)
-..+.+.+++..+|..+.++.++ ....+. +..-|. -+|+++....||+..
T Consensus 255 ~~~~~~~lg~~~~r~~~l~~~~~-~a~~~e-~g~qN~-~lai~lA~~~f~~~~ 304 (328)
T TIGR00832 255 YFYIMFFLTFALAKKLGLPYSIT-APAAFT-GASNNF-ELAIAVAISLFGLNS 304 (328)
T ss_pred HHHHHHHHHHHHHHHhCcChhhh-hhheeh-hhhhhH-HHHHHHHHHhCCCCc
Confidence 34556677788888865542323 223453 555665 599999999998743
No 16
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=76.91 E-value=51 Score=29.86 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhcCCcchhhhhhhhhccccccccchhhhhhhhhcC-CchhHHH
Q 048649 78 SKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYG-QMAVDLV 134 (256)
Q Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G-~~~~~~~ 134 (256)
-...++.+++.++|..+-+ .+++.-.++ +.-+|.--+.+++..++|| +++.+.+
T Consensus 256 y~~~~~~i~~~i~k~lgl~-y~~~~~~~f--t~aSNnfeLAiAvAi~lfG~~s~aA~a 310 (342)
T COG0798 256 YFLLMFFISYFIAKALGLP-YEDAAALVF--TGASNNFELAIAVAIALFGLTSGAALA 310 (342)
T ss_pred HHHHHHHHHHHHHHHhCCC-hhhhhceee--eeccccHHHHHHHHHHhcCccccchhh
Confidence 3445566777788876554 334333445 5678888899999999999 5555433
No 17
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=76.70 E-value=31 Score=32.19 Aligned_cols=97 Identities=8% Similarity=-0.077 Sum_probs=60.1
Q ss_pred HHHHhHhhhhhccccCh---hhhHHHHHHHHHHHHHHHHHH-HhccCCCCC----CcHhHHHHHHHHHHHHHHHHHHHHH
Q 048649 20 ALMLGYGSVKWWKIIAP---EECAAVNRFVCYFTLPLFTIE-FTTQVDPFN----LNYRLIGADAISKLIIVFVLAFWAM 91 (256)
Q Consensus 20 li~lG~~~~r~~~~~~~---~~~~~l~~lv~~v~lP~lif~-~~~~~~~~~----l~~~~i~~~~~~~l~~~~~~~~~~~ 91 (256)
++.+=.+++- .+++++ +..+...|++.+-..|++++- .+..+|+++ +++..+.......+.....++++.|
T Consensus 277 mIi~~~i~K~-~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~ 355 (414)
T PF03390_consen 277 MIILVAIVKA-FGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGK 355 (414)
T ss_pred HHHHHHHHHH-hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444544 788887 456778888888888777774 566677764 3666555444444444455667788
Q ss_pred HhcCCcchhhhhhhhhccccccccch
Q 048649 92 CSKNESCYSWCITNFSLCTLTNSLVV 117 (256)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~N~~~i 117 (256)
+.+--+.+.+...+++.+..+.+|.+
T Consensus 356 l~g~YPvEsAItaGLC~an~GGtGDv 381 (414)
T PF03390_consen 356 LVGFYPVESAITAGLCMANMGGTGDV 381 (414)
T ss_pred HhCCChHHHHHHhhhcccCCCCCCcc
Confidence 87766455555555544555556555
No 18
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=73.07 E-value=28 Score=31.17 Aligned_cols=113 Identities=13% Similarity=0.116 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHhccCCCCCC-c---HhHHHHHHHHHHHH
Q 048649 7 VYKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFNL-N---YRLIGADAISKLII 82 (256)
Q Consensus 7 ~~~~~~~ilpi~lli~lG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~~~~~l-~---~~~i~~~~~~~l~~ 82 (256)
....+..++| +.+|..++. +|+|.++-+.+- ..+..|++-|.-=.+.|+++. . ..++++. +...+.
T Consensus 168 ~~~lv~~llP----~iiG~iLGN----LD~~~r~fl~~~-~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv-~~~~vt 237 (314)
T PF03812_consen 168 WMSLVAALLP----IIIGMILGN----LDPDFRKFLAPG-VPILIPFFGFALGAGINLSNIIKAGLSGILLGV-IVVVVT 237 (314)
T ss_pred HHHHHHHHHH----HHHHHHHhc----CCHHHHHHHhcC-CCeeeehhhhhhcCCCCHHHHHHhCcchHHHHH-HHHHHH
Confidence 3456788888 667888765 777777666554 478889998875566666642 1 2233322 223333
Q ss_pred HHHHHHHHHHhcCCcchhhhhhhhhccccccccchhhhhhhhhcCCchhHHH
Q 048649 83 VFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAVDLV 134 (256)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~~~~~~ 134 (256)
....++.-|+..+++.. .-.+.+ ++-+|. ...|-..+--.++...++
T Consensus 238 g~~~~~~dr~i~~~~g~--aG~A~s-stAGna--vatPaaiA~~dP~~~~~~ 284 (314)
T PF03812_consen 238 GIPLYLADRLILKGNGV--AGAAIS-STAGNA--VATPAAIAAADPSFAPYA 284 (314)
T ss_pred hHHHHHHHHHHcCCCCc--eeehHH-hhhhhh--hhhhHHHHHhChhhHhhH
Confidence 44455566765444222 112334 666776 567777777666544433
No 19
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=59.85 E-value=1.3e+02 Score=27.84 Aligned_cols=49 Identities=20% Similarity=0.358 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHhh------HHHHHHHHHhHHhhhccc
Q 048649 189 SYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRA------GTGTAMFSMGIFMALQEK 241 (256)
Q Consensus 189 i~a~i~Gl~~~~~~~~~~i~lP~~l~~~l~~lg~~------~~plaL~~iG~~L~~~~~ 241 (256)
+++......+... .-++|+-+.+.++.+.+. .+-+.++.+|+.++....
T Consensus 235 iva~a~~f~~~lt----~~~vp~~la~~~~~~~~~~~~~ll~inl~llvvG~fmd~~a~ 289 (379)
T COG1593 235 IVAAAAAFAWLLT----VEQVPQQLADWLLSLSDSPLVVLLVINLLLLVVGTFMDLTAA 289 (379)
T ss_pred HHHHHHHHHHHHH----HhccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 3344444444444 668999998888887776 455677888988865443
No 20
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=57.64 E-value=39 Score=30.19 Aligned_cols=111 Identities=13% Similarity=0.126 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHhccCCCCCC-cH---hHHHHHHHHHHHHH
Q 048649 8 YKVVEAMVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFNL-NY---RLIGADAISKLIIV 83 (256)
Q Consensus 8 ~~~~~~ilpi~lli~lG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~~~~~l-~~---~~i~~~~~~~l~~~ 83 (256)
...+..++| +.+|+.++. +|+|.++-+.+ ...+..|++-|.-=...|++++ .- .++++. +...+..
T Consensus 169 ~~lv~~ilP----lliG~ilGN----LD~~~r~fl~~-~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl-~v~~vtG 238 (314)
T TIGR00793 169 HVFVGAVLP----FLVGFALGN----LDPELRDFFSK-AVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGV-SVIILTG 238 (314)
T ss_pred HHHHHHHHH----HHHHHHHhc----CCHHHHHHhcc-CCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHH-HHHHHHh
Confidence 456778888 667888765 77776666655 3478889888865556666542 21 233322 2334444
Q ss_pred HHHHHHHHHhcCCcchhhhhhhhhccccccccchhhhhhhhhcCCchhHH
Q 048649 84 FVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMAVDL 133 (256)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~~~~~ 133 (256)
...++.-|+..+++... -.+.+ ++-+|. ...|-..+--.++...+
T Consensus 239 ~~~~~~dr~~~g~~g~a--G~A~s-stAGnA--vatPaavA~adPs~~~~ 283 (314)
T TIGR00793 239 IPLILADKFIGGGDGTA--GIAAS-SSAGAA--VATPVLIAEMVPAFKPV 283 (314)
T ss_pred HHHHHHHHHhcCCCCch--hhHHH-HHHHHh--hhhHHHHHHhChhhhhh
Confidence 55566677764432221 12333 566776 56777777666554433
No 21
>COG4389 Site-specific recombinase [DNA replication, recombination, and repair]
Probab=55.72 E-value=24 Score=33.33 Aligned_cols=49 Identities=22% Similarity=0.362 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHhhchhH
Q 048649 133 LVVQSSVLQSILWLTIFLFVLEYRRSARIDLEEGHGRPSFWHLMKIVWPKMAKNPNS 189 (256)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~nP~i 189 (256)
-+.++.+++.++-|.++..+.-++++.+ ..|++...+.+++++.++|..
T Consensus 612 ~vlLiGvvNl~VSF~lAl~vAlRSr~t~--------i~s~r~I~~~VW~~Ik~~PL~ 660 (677)
T COG4389 612 SVLLIGLVNLCVSFSLALFVALRSRGTK--------IGSIRNIIKSVWNQIKSNPLI 660 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc--------chhHHHHHHHHHHHHhcCCcE
Confidence 3344556677777888887766665431 346666678888999999964
No 22
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=52.39 E-value=46 Score=31.51 Aligned_cols=39 Identities=8% Similarity=0.103 Sum_probs=25.6
Q ss_pred HHHHHhhchhHHHHHHHHHHHHhhh-hcCCCCcHHHHHHH
Q 048649 179 VWPKMAKNPNSYACILGLAWAFVAH-RWHLKMPSIIEGSI 217 (256)
Q Consensus 179 ~~~~i~~nP~i~a~i~Gl~~~~~~~-~~~i~lP~~l~~~l 217 (256)
-+|+++++|++||+.++-.....+. ....-+|..+.+.+
T Consensus 250 P~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL 289 (466)
T KOG2532|consen 250 PYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVL 289 (466)
T ss_pred CHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 4689999999999999887765511 00124566555443
No 23
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=50.82 E-value=1.1e+02 Score=23.35 Aligned_cols=76 Identities=11% Similarity=0.074 Sum_probs=43.2
Q ss_pred HHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHH--HHHHHHHHhccCCC-CCCcHh--HHHHHHHHHHHHHHHHHHH
Q 048649 15 VPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFT--LPLFTIEFTTQVDP-FNLNYR--LIGADAISKLIIVFVLAFW 89 (256)
Q Consensus 15 lpi~lli~lG~~~~r~~~~~~~~~~~~l~~lv~~v~--lP~lif~~~~~~~~-~~l~~~--~i~~~~~~~l~~~~~~~~~ 89 (256)
+.+++++...-++.| +++++++..+++ -||=. .|..+--+- +.+. ..++.. -+.+-..+...+|+..-.+
T Consensus 38 iAMlLLi~~~~~l~k-~G~l~~~te~Gi---~FW~aMYIPIVVAMAA-~QNVv~Al~gG~~Allagi~av~~~~~~i~~l 112 (125)
T TIGR00807 38 IAMILLIISKELLAK-RGHLPQVTQFGV---GFWSAMYIPIVVAMAA-GQNVVAALSGGMLALLASVAALIVTVLVIRWI 112 (125)
T ss_pred HHHHHHHHHHHHHHH-cCCCChhHHhHH---HHHHccHhHHHHHHhh-hchhHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 567788999999998 799999888877 34433 465554332 3332 223222 2222234444455544455
Q ss_pred HHHhcC
Q 048649 90 AMCSKN 95 (256)
Q Consensus 90 ~~~~~~ 95 (256)
+|.-++
T Consensus 113 ~r~g~~ 118 (125)
T TIGR00807 113 SKSSYG 118 (125)
T ss_pred HHhCCC
Confidence 665443
No 24
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=50.26 E-value=2e+02 Score=26.22 Aligned_cols=105 Identities=12% Similarity=0.118 Sum_probs=65.0
Q ss_pred ccccChhhhHHHHHH-----HHHHHHHHHHHHHhccCCCCCC---cHhHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhh
Q 048649 31 WKIIAPEECAAVNRF-----VCYFTLPLFTIEFTTQVDPFNL---NYRLIGADAISKLIIVFVLAFWAMCSKNESCYSWC 102 (256)
Q Consensus 31 ~~~~~~~~~~~l~~l-----v~~v~lP~lif~~~~~~~~~~l---~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 102 (256)
.|+++++..+..+++ -.|+..-|++--++...|.+-+ -.+++...+.+....++.+.++..++..+..+.-.
T Consensus 6 ~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~~~ 85 (347)
T TIGR00783 6 YNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFDHSLM 85 (347)
T ss_pred eCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHhhh
Confidence 588999988888885 4688889999999999887642 34566555566666666666677776555222211
Q ss_pred hhhh-hccccccccchhhhhhhh-hcCCchhHHHH
Q 048649 103 ITNF-SLCTLTNSLVVGVPLLKP-MYGQMAVDLVV 135 (256)
Q Consensus 103 ~~~~-~~~~~~N~~~iG~Pi~~~-l~G~~~~~~~~ 135 (256)
...+ ..+.-.+.|.+++....+ ..|.+.-.+.+
T Consensus 86 ~i~lPIm~GG~GaGavPLS~~Y~~~~g~~~~~~~s 120 (347)
T TIGR00783 86 YIVMPIMAGGVGAGIVPLSIIYSAITGRSSEEIFS 120 (347)
T ss_pred eeeehhcCCCcccchhhHHHHHHHHhCCCHHHHHH
Confidence 1111 112333456666665555 56776554443
No 25
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=47.38 E-value=2.2e+02 Score=25.81 Aligned_cols=109 Identities=12% Similarity=0.090 Sum_probs=66.5
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCCCChhHHHHHHHHHHHhhch-hHHHHHHHHHHHHhhh
Q 048649 125 MYGQMAVDLVVQSSVLQSILWLTIFLFVLEYRRSARIDLEEGHGRPSFWHLMKIVWPKMAKNP-NSYACILGLAWAFVAH 203 (256)
Q Consensus 125 l~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~nP-~i~a~i~Gl~~~~~~~ 203 (256)
.+||+....+.+.=...++.+-++...+.-..+.++++ ++.+ ..+ .+-| .+++.+...+++-.
T Consensus 204 ~~~~~a~~~AtivKl~Rvl~L~pv~~~la~~~~~~~~~-----~~~~-------~~~--~~~P~FvlgFl~~~~l~S~-- 267 (335)
T TIGR00698 204 LIGPIVENEAVIIKMLRVMMLAPFLLILSIIYSRSDGI-----SENE-------SSK--ITIPWFAVLFIGVAIFNSF-- 267 (335)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----cccc-------cCC--CCCChHHHHHHHHHHHHHh--
Confidence 35777777777666777777767666543333211000 0000 001 2346 45566555555644
Q ss_pred hcCCCCcHHHHHHHHHHHhhHHHHHHHHHhHHhhhccceeeechhHHhHh
Q 048649 204 RWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGPKLTVFG 253 (256)
Q Consensus 204 ~~~i~lP~~l~~~l~~lg~~~~plaL~~iG~~L~~~~~~~~~~~~~~~~~ 253 (256)
+ .+|+...+.++.+++...-++|..+|.+.+..+ ..+-|.+-...|
T Consensus 268 --~-~lp~~~~~~l~~~~~~ll~~AmaaiGl~t~~~~-l~~~G~kp~~~g 313 (335)
T TIGR00698 268 --D-LLPGEVVQALVPLDTFLLATAMAALGLTTNVSA-VKKAGVKPLFAS 313 (335)
T ss_pred --h-hCcHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH-HHHcCchHHHHH
Confidence 3 488999999999999999999999999986433 333466555444
No 26
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=44.89 E-value=2.5e+02 Score=26.06 Aligned_cols=90 Identities=14% Similarity=0.058 Sum_probs=52.6
Q ss_pred HHHHHHHHhHhhhhhccccChh---hhHHHHHHHHH-HHHHHHHHHHhccCCCCC----CcHhHHHHHHHHHHHHHHHHH
Q 048649 16 PLYFALMLGYGSVKWWKIIAPE---ECAAVNRFVCY-FTLPLFTIEFTTQVDPFN----LNYRLIGADAISKLIIVFVLA 87 (256)
Q Consensus 16 pi~lli~lG~~~~r~~~~~~~~---~~~~l~~lv~~-v~lP~lif~~~~~~~~~~----l~~~~i~~~~~~~l~~~~~~~ 87 (256)
|+..++.+=.+++- .++++++ ..+.++++.-+ .+-|.+.=..+.-+|+++ ++|..+.......+.....++
T Consensus 292 ~va~MIil~a~lk~-~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~ 370 (438)
T COG3493 292 PVAFMIILVAILKA-ANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGA 370 (438)
T ss_pred hHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 55455666666665 7888764 55667777654 445555545676677664 366655443333333445667
Q ss_pred HHHHHhcCCcchhhhhhhh
Q 048649 88 FWAMCSKNESCYSWCITNF 106 (256)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~ 106 (256)
+.+|+.+--|.+.+...++
T Consensus 371 f~grl~~~YPVEaAI~agl 389 (438)
T COG3493 371 FVGRLMGFYPVEAAITAGL 389 (438)
T ss_pred HHHHHhcCCchHHHHHHhH
Confidence 7888877664544333334
No 27
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=42.40 E-value=3.1e+02 Score=26.12 Aligned_cols=27 Identities=19% Similarity=0.079 Sum_probs=18.6
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHh
Q 048649 175 LMKIVWPKMAKNPNSYACILGLAWAFV 201 (256)
Q Consensus 175 ~~~~~~~~i~~nP~i~a~i~Gl~~~~~ 201 (256)
..++.+..+.+|.+..-..+...+...
T Consensus 224 ~~~~~~~~~~~Nrp~~~~l~~~l~~~~ 250 (467)
T COG2211 224 KLKDSFLLIFKNRPLLLLLLMNLLLFI 250 (467)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 366667778899987776665555544
No 28
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=41.33 E-value=1.1e+02 Score=27.56 Aligned_cols=44 Identities=14% Similarity=0.137 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHhhHHHHHHHHHhHHhhhc
Q 048649 188 NSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQ 239 (256)
Q Consensus 188 ~i~a~i~Gl~~~~~~~~~~i~lP~~l~~~l~~lg~~~~plaL~~iG~~L~~~ 239 (256)
.++++++|+++.=+ .-++|+...+..+. .+|+.-+.+|..++-+
T Consensus 169 lilpILiGmilGNl----d~~~~~~l~~Gi~f----~I~f~~f~LG~~lnl~ 212 (312)
T PRK12460 169 ALLPLVLGMILGNL----DPDMRKFLTKGGPL----LIPFFAFALGAGINLS 212 (312)
T ss_pred HHHHHHHHHHHhcc----chhhHHHHhccceE----eHHHHHHHhcCCeeHH
Confidence 66777777777633 22456666665554 7888888888887643
No 29
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=40.44 E-value=55 Score=29.23 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=46.4
Q ss_pred hhchhHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHhhHHHHHHHHHhHHhhhccceeeech
Q 048649 184 AKNPNSYACILGLAWAFVAHRWHLKMPSIIEGSILIMSRAGTGTAMFSMGIFMALQEKLIACGP 247 (256)
Q Consensus 184 ~~nP~i~a~i~Gl~~~~~~~~~~i~lP~~l~~~l~~lg~~~~plaL~~iG~~L~~~~~~~~~~~ 247 (256)
--+|.++|+++|+++.=. -...|+...+.++.-++.....+...+|..++-++ ....|+
T Consensus 25 ~l~~~~~AillG~~i~n~----~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~-i~~~G~ 83 (305)
T PF03601_consen 25 GLGALLIAILLGMLIGNL----FFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSD-ILALGW 83 (305)
T ss_pred CccHHHHHHHHHHHHhhh----ccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHH-HHHhCc
Confidence 357889999999999821 25688999999999999999999999999986433 334444
No 30
>PF13347 MFS_2: MFS/sugar transport protein
Probab=40.13 E-value=2.9e+02 Score=25.13 Aligned_cols=26 Identities=8% Similarity=0.118 Sum_probs=21.1
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHHh
Q 048649 176 MKIVWPKMAKNPNSYACILGLAWAFV 201 (256)
Q Consensus 176 ~~~~~~~i~~nP~i~a~i~Gl~~~~~ 201 (256)
.++.++.++|||...-..+...+...
T Consensus 214 ~~~~~~~~~~nr~~~~l~~~~~~~~~ 239 (428)
T PF13347_consen 214 LRDSLRSLFRNRPFRILLLAFFLQWL 239 (428)
T ss_pred cccchhhhcccchHHHHHHHHHHHHh
Confidence 67778999999998888777777655
No 31
>TIGR00473 pssA CDP-diacylglycerol--serine O-phosphatidyltransferase. This enzyme, CDP-diacylglycerol--serine O-phosphatidyltransferase, is involved in phospholipid biosynthesis catalyzing the reaction CDP-diacylglycerol + L-serine = CMP + L-1-phosphatidylserine. Members of this family do not bear any significant sequence similarity to the corresponding E.coli protein.
Probab=39.58 E-value=1.9e+02 Score=22.89 Aligned_cols=38 Identities=13% Similarity=0.059 Sum_probs=30.4
Q ss_pred HHHhHhhhhhccccCh--hhhHHHHHHHHHHHHHHHHHHHh
Q 048649 21 LMLGYGSVKWWKIIAP--EECAAVNRFVCYFTLPLFTIEFT 59 (256)
Q Consensus 21 i~lG~~~~r~~~~~~~--~~~~~l~~lv~~v~lP~lif~~~ 59 (256)
..=|..+|| .|.-++ ++.+.+.+.+.+-..|+++....
T Consensus 35 ~~DG~vAR~-~~~~s~~G~~lDsl~D~vsfgvaPa~l~~~~ 74 (151)
T TIGR00473 35 FLDGRVARK-TNRVSDFGKELDSLADVVSFGVAPAALAYSI 74 (151)
T ss_pred HhhHHHHHH-cCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355888877 676655 46688999999999999999876
No 32
>COG1183 PssA Phosphatidylserine synthase [Lipid metabolism]
Probab=37.95 E-value=1e+02 Score=26.38 Aligned_cols=38 Identities=13% Similarity=0.105 Sum_probs=30.2
Q ss_pred hHhhhhhccccCh--hhhHHHHHHHHHHHHHHHHHHHhccC
Q 048649 24 GYGSVKWWKIIAP--EECAAVNRFVCYFTLPLFTIEFTTQV 62 (256)
Q Consensus 24 G~~~~r~~~~~~~--~~~~~l~~lv~~v~lP~lif~~~~~~ 62 (256)
|..+|| .+--++ ++.+.+.+++-+-..|+++++...-.
T Consensus 53 G~VAR~-~~~~s~~G~~lDSLaD~VsFgVaPA~l~y~~~~~ 92 (234)
T COG1183 53 GRVARK-LNAKSAFGAELDSLADLVSFGVAPALLLYSSGLN 92 (234)
T ss_pred hHHHHh-cCCcchHHHHHhHHHHHHHhhHHHHHHHHHHhcc
Confidence 677777 676655 57789999999999999999875443
No 33
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=36.88 E-value=65 Score=19.48 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=19.5
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHh
Q 048649 177 KIVWPKMAKNPNSYACILGLAWAFV 201 (256)
Q Consensus 177 ~~~~~~i~~nP~i~a~i~Gl~~~~~ 201 (256)
|+..-.++--|+..|.++|+++.+-
T Consensus 3 kSl~fa~iMVPVvma~ilglIyGlG 27 (41)
T PF10766_consen 3 KSLAFAVIMVPVVMALILGLIYGLG 27 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566778999999999998753
No 34
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=36.71 E-value=2.9e+02 Score=24.78 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=39.1
Q ss_pred HHHHHHhHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHhccCCCCCC---cHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 048649 18 YFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFNL---NYRLIGADAISKLIIVFVLAFWAMCSK 94 (256)
Q Consensus 18 ~lli~lG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~~~~~l---~~~~i~~~~~~~l~~~~~~~~~~~~~~ 94 (256)
.+=+.+|.+++. ++++..+.+.+= ..+.+|...|.-=.+.+++++ .+.-++...+.....+...++..|+.+
T Consensus 170 ilpILiGmilGN----ld~~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rllg 244 (312)
T PRK12460 170 LLPLVLGMILGN----LDPDMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLVG 244 (312)
T ss_pred HHHHHHHHHHhc----cchhhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333666766643 333222222222 233777777755456666552 233333233455666777778888885
Q ss_pred CC
Q 048649 95 NE 96 (256)
Q Consensus 95 ~~ 96 (256)
.+
T Consensus 245 ~~ 246 (312)
T PRK12460 245 GT 246 (312)
T ss_pred CC
Confidence 54
No 35
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=35.69 E-value=5.1e+02 Score=26.64 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=24.9
Q ss_pred cChhhhHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 048649 34 IAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFN 66 (256)
Q Consensus 34 ~~~~~~~~l~~lv~~v~lP~lif~~~~~~~~~~ 66 (256)
+.++..+.+..++..+++|......=.+.|+..
T Consensus 311 ~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~ 343 (832)
T PLN03159 311 LGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTK 343 (832)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHH
Confidence 344566778888999999999988766777643
No 36
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=35.60 E-value=2e+02 Score=21.99 Aligned_cols=76 Identities=7% Similarity=0.048 Sum_probs=42.6
Q ss_pred HHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHH--HHHHHHHHhccCCCCCCcHhH--HHHHHHHHHHHHHHHHHHH
Q 048649 15 VPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFT--LPLFTIEFTTQVDPFNLNYRL--IGADAISKLIIVFVLAFWA 90 (256)
Q Consensus 15 lpi~lli~lG~~~~r~~~~~~~~~~~~l~~lv~~v~--lP~lif~~~~~~~~~~l~~~~--i~~~~~~~l~~~~~~~~~~ 90 (256)
+.+++++.+..++.| +++++++..+++ .||=. .|..+--+-.+.-...++... +.+-..+..+.|+..-.++
T Consensus 38 iAMlLLI~~~~~l~k-~g~l~~~te~Gi---~FW~amYIPIVVAMAA~QNVv~Al~gG~~Allagi~av~~~~~~ip~ls 113 (125)
T PF03817_consen 38 IAMLLLIFARLWLQK-KGLLSKPTEQGI---EFWSAMYIPIVVAMAAQQNVVAALSGGPVALLAGIGAVAVCFLLIPLLS 113 (125)
T ss_pred HHHHHHHHHHHHHHH-cCCCChHHHhHH---HHHHccHHHHHHHHhhhhhhHHhhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 567788889999988 799999888877 34433 466554432222222342222 2222334444454444455
Q ss_pred HHhc
Q 048649 91 MCSK 94 (256)
Q Consensus 91 ~~~~ 94 (256)
|.-+
T Consensus 114 r~g~ 117 (125)
T PF03817_consen 114 RIGR 117 (125)
T ss_pred hcCC
Confidence 6543
No 37
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=30.92 E-value=4.3e+02 Score=24.34 Aligned_cols=126 Identities=14% Similarity=0.053 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhHhhhhhccccCh-hhhHHHHHHHHHHHHHHHHHHHh-ccCCCCCC-c-HhHHHHHHHHHHHHHHHHHHH
Q 048649 14 MVPLYFALMLGYGSVKWWKIIAP-EECAAVNRFVCYFTLPLFTIEFT-TQVDPFNL-N-YRLIGADAISKLIIVFVLAFW 89 (256)
Q Consensus 14 ilpi~lli~lG~~~~r~~~~~~~-~~~~~l~~lv~~v~lP~lif~~~-~~~~~~~l-~-~~~i~~~~~~~l~~~~~~~~~ 89 (256)
..++.....+|..... .+..+. ...+.+..+.+|+++ ..+ .+.|+.++ + +.+++...+...+...+.+.+
T Consensus 240 ~~~il~~tt~~l~~~~-~~~~~~l~g~~~lg~~lly~ff-----a~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~~ 313 (378)
T PF05684_consen 240 TWLILTVTTLGLATSF-PPFRKLLRGASELGTFLLYLFF-----AVIGASADISELLDAPSLFLFGFIILAIHLLLMLIL 313 (378)
T ss_pred HHHHHHHHHHHHHHhc-cchhhcCCchHHHHHHHHHHHH-----HHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666665543 333333 466778777777643 233 24465553 3 323322222233333445557
Q ss_pred HHHhcCCcchhhhhhhhhccccccccch-hhhhhhhhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 048649 90 AMCSKNESCYSWCITNFSLCTLTNSLVV-GVPLLKPMYGQMAVDLVVQSSVLQSILWLTIFLF 151 (256)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~N~~~i-G~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~ 151 (256)
+|++|-+ .++..+ ++..|.|=- --|.+...+|++-+....+..+.....-+-+|+.
T Consensus 314 ~kl~k~~-l~~~~v-----AS~AnIGGpaTA~a~A~a~~~~Lv~pgvL~gvlGyaiGty~G~~ 370 (378)
T PF05684_consen 314 GKLFKID-LFELLV-----ASNANIGGPATAPAVAAAKGPSLVPPGVLMGVLGYAIGTYLGLA 370 (378)
T ss_pred HHHHCCC-HHHHHH-----HhhcccCCcchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 8887766 333222 233333211 1466777788544445554445444444444443
No 38
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.39 E-value=56 Score=22.59 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhh
Q 048649 7 VYKVVEAMVPLYFALMLGYGSVK 29 (256)
Q Consensus 7 ~~~~~~~ilpi~lli~lG~~~~r 29 (256)
+.-.+...+-+...+.+||+.+|
T Consensus 4 ~lltFg~Fllvi~gMsiG~I~kr 26 (77)
T COG2991 4 FLLTFGIFLLVIAGMSIGYIFKR 26 (77)
T ss_pred HHHHHHHHHHHHHHHhHhhheec
Confidence 45566777788888999999987
No 39
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=28.62 E-value=1.2e+02 Score=26.71 Aligned_cols=20 Identities=20% Similarity=0.042 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhccCCCC
Q 048649 46 VCYFTLPLFTIEFTTQVDPF 65 (256)
Q Consensus 46 v~~v~lP~lif~~~~~~~~~ 65 (256)
+--+++|..++.+++.++++
T Consensus 264 vt~IflP~t~IaGiyGMNf~ 283 (318)
T TIGR00383 264 VSTIFIPLTFIAGIYGMNFK 283 (318)
T ss_pred HHHHHHHHHHHHHHHhCCcc
Confidence 44678999999999988876
No 40
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=27.83 E-value=4.6e+02 Score=23.73 Aligned_cols=135 Identities=13% Similarity=0.013 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHhccCCCCC---CcHhHHHHHHHHHHHH---HHHHH
Q 048649 14 MVPLYFALMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFN---LNYRLIGADAISKLII---VFVLA 87 (256)
Q Consensus 14 ilpi~lli~lG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~~~~~---l~~~~i~~~~~~~l~~---~~~~~ 87 (256)
..|-..++-+|-..-...|+++ ....-.+-+-+..+|++++.-+.+-|+.+ +..+++..++++.... +.+.+
T Consensus 31 ~Vpa~v~iy~gamff~t~Glfs--~~S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli~sv~~vlGfIl~y 108 (384)
T COG5505 31 AVPAAVIIYAGAMFFTTVGLFS--VESPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLISSVGTVLGFILAY 108 (384)
T ss_pred hhhHHHHHHHHHHHHhhccccc--ccCcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Confidence 4555566666654333368885 45556667788889999998888877654 3556665544333332 22333
Q ss_pred HHHHHhcCCcchhhhhhhhhccccccccchhhhhhhhhcC--CchhHHHHHHHHHHHHHHHHHHHHHHh
Q 048649 88 FWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYG--QMAVDLVVQSSVLQSILWLTIFLFVLE 154 (256)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G--~~~~~~~~~~~~~~~~~~~~~~~~l~~ 154 (256)
..-|-...+ .++. ..+.+.+.-+-..++ .-++..+. ++...+....+.+..-++..+-+.+..
T Consensus 109 p~~ksf~gd-~Wka-~gmi~gSytGGSaNm--AAmqaaLeVP~~~fsatlaaDtv~ySll~~lli~iVp 173 (384)
T COG5505 109 PLLKSFIGD-LWKA-GGMISGSYTGGSANM--AAMQAALEVPGEYFSATLAADTVMYSLLFFLLISIVP 173 (384)
T ss_pred HHHhhhcch-HHhh-hhheeeeeeCCcchH--HHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221112 2221 122221222323333 34455553 334455556666655555555554443
No 41
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=26.55 E-value=4e+02 Score=22.65 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhHhhhh
Q 048649 9 KVVEAMVPLYFALMLGYGSVK 29 (256)
Q Consensus 9 ~~~~~ilpi~lli~lG~~~~r 29 (256)
.....+...+.-...|++..|
T Consensus 38 ~~~~~~~~~~~~~~~g~l~dr 58 (352)
T PF07690_consen 38 FSAFFLGSALFSPFAGYLSDR 58 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666777788888877
No 42
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=25.93 E-value=1.2e+02 Score=27.14 Aligned_cols=26 Identities=19% Similarity=0.083 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhccCCCCC---CcHhH
Q 048649 46 VCYFTLPLFTIEFTTQVDPFN---LNYRL 71 (256)
Q Consensus 46 v~~v~lP~lif~~~~~~~~~~---l~~~~ 71 (256)
+--+++|..+..+++.++++. ++|..
T Consensus 268 ~s~iflPpTlIagiyGMNf~~mPel~~~~ 296 (322)
T COG0598 268 VSTIFLPPTLITGFYGMNFKGMPELDWPY 296 (322)
T ss_pred HHHHHHhhHHHHcccccCCCCCcCCCCcc
Confidence 446788999999999988772 45554
No 43
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=24.48 E-value=2.3e+02 Score=25.36 Aligned_cols=20 Identities=15% Similarity=0.021 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhccCCCC
Q 048649 46 VCYFTLPLFTIEFTTQVDPF 65 (256)
Q Consensus 46 v~~v~lP~lif~~~~~~~~~ 65 (256)
+--+++|..++.+++.++++
T Consensus 262 ~s~if~pptliagiyGMNf~ 281 (316)
T PRK11085 262 VSVVFLPPTLVASSYGMNFE 281 (316)
T ss_pred HHHHHHHHHHHHhhcccccC
Confidence 44578999999999998876
No 44
>COG1906 Uncharacterized conserved protein [Function unknown]
Probab=23.02 E-value=5.8e+02 Score=23.26 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=15.5
Q ss_pred cchhhhhhhhhcCC-chhHHHH
Q 048649 115 LVVGVPLLKPMYGQ-MAVDLVV 135 (256)
Q Consensus 115 ~~iG~Pi~~~l~G~-~~~~~~~ 135 (256)
.-+.+|+++..|+. +.+.++.
T Consensus 315 vsiafPlL~pff~g~~~lalay 336 (388)
T COG1906 315 VSIAFPLLMPFFTGFKKLALAY 336 (388)
T ss_pred HHHhhhhhHHHhccchHHHHHH
Confidence 34779999999977 6665544
No 45
>COG5546 Small integral membrane protein [Function unknown]
Probab=21.86 E-value=1.2e+02 Score=21.05 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=24.9
Q ss_pred hhchhHHHHHHHHHHHHhhh---hcCCCCcHHHHHHHH
Q 048649 184 AKNPNSYACILGLAWAFVAH---RWHLKMPSIIEGSIL 218 (256)
Q Consensus 184 ~~nP~i~a~i~Gl~~~~~~~---~~~i~lP~~l~~~l~ 218 (256)
+|||+.|-.++|.++.+.++ ..|+++|.-+.+.++
T Consensus 8 mknkvf~vail~~ifllAQqll~~fGI~~~~nl~d~~n 45 (80)
T COG5546 8 MKNKVFLVAILGAIFLLAQQLLGWFGIKLPSNLADIAN 45 (80)
T ss_pred ecCceehHHHHHHHHHHHHHHHHHeeeecchhHHHHHH
Confidence 58999998888888876643 346889976544443
No 46
>PRK09546 zntB zinc transporter; Reviewed
Probab=21.25 E-value=2.4e+02 Score=25.05 Aligned_cols=20 Identities=15% Similarity=-0.051 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhccCCCC
Q 048649 46 VCYFTLPLFTIEFTTQVDPF 65 (256)
Q Consensus 46 v~~v~lP~lif~~~~~~~~~ 65 (256)
+--+++|..++.+++.++++
T Consensus 270 lt~IflPlT~IaGiyGMNf~ 289 (324)
T PRK09546 270 MAMVFLPTTFLTGLFGVNLG 289 (324)
T ss_pred HHHHHHHHHHHHhhhccccC
Confidence 33578899999999998876
Done!