Query 048649
Match_columns 256
No_of_seqs 151 out of 1058
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 20:17:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 95.2 0.29 9.8E-06 42.9 12.4 65 77-144 236-302 (332)
2 3zux_A Transporter, ASBTNM; tr 40.6 1.7E+02 0.0059 24.9 17.2 84 4-96 9-100 (332)
3 4ev6_A Magnesium transport pro 21.3 82 0.0028 26.9 4.0 19 47-65 286-304 (339)
4 2iub_A CORA, divalent cation t 17.3 71 0.0024 27.6 2.7 20 46-65 309-328 (363)
5 3o7q_A L-fucose-proton symport 15.6 4.9E+02 0.017 21.6 15.6 25 176-200 247-271 (438)
6 2k1k_A Ephrin type-A receptor 12.5 2.2E+02 0.0074 16.1 3.0 21 9-29 16-36 (38)
7 2lx0_A Membrane fusion protein 11.7 2E+02 0.0069 15.1 2.9 22 8-29 6-27 (32)
8 2l8s_A Integrin alpha-1; trans 7.7 4.4E+02 0.015 16.2 4.4 25 68-92 9-33 (54)
9 2jwa_A Receptor tyrosine-prote 7.3 4.2E+02 0.014 15.6 3.2 21 72-92 14-34 (44)
10 1v54_G Cytochrome C oxidase po 4.6 5.3E+02 0.018 17.4 2.6 25 35-59 9-33 (85)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=95.18 E-value=0.29 Score=42.89 Aligned_cols=65 Identities=14% Similarity=-0.025 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchhhhhhhhhccccccccchhhhhhhhhcCCch--hHHHHHHHHHHHHH
Q 048649 77 ISKLIIVFVLAFWAMCSKNESCYSWCITNFSLCTLTNSLVVGVPLLKPMYGQMA--VDLVVQSSVLQSIL 144 (256)
Q Consensus 77 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~iG~Pi~~~l~G~~~--~~~~~~~~~~~~~~ 144 (256)
+-..+.|.+++..+|..+.++. +....++. +..-|+ -+|+|+....||++. .....+|...|++.
T Consensus 236 l~~~~~~~lg~~~~r~~~~~~~-~~~ti~~e-~G~qNs-~lai~lA~~~F~~~p~~alp~~iy~~~q~i~ 302 (332)
T 3zux_A 236 LHNGIGYLLGFFAAKWTGLPYD-AQKALTIE-VGMQNS-GLAAALAAAHFAAAPVVAVPGALFSVWHNIS 302 (332)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHH-HHHHHHHH-HHCCCH-HHHHHHHHHHSTTCGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHh-Hhhhhhhh-hhhccH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 3445566778888888765533 32334454 566777 599999999996433 33445555555443
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=40.57 E-value=1.7e+02 Score=24.92 Aligned_cols=84 Identities=7% Similarity=0.048 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHH--HHHhHhhhhhccccChhhhHHHHHHHHHHHHHHHHHHHhccCCCCCC-----cHhHHHHHH
Q 048649 4 WEDVYKVVEAMVPLYFA--LMLGYGSVKWWKIIAPEECAAVNRFVCYFTLPLFTIEFTTQVDPFNL-----NYRLIGADA 76 (256)
Q Consensus 4 ~~~~~~~~~~ilpi~ll--i~lG~~~~r~~~~~~~~~~~~l~~lv~~v~lP~lif~~~~~~~~~~l-----~~~~i~~~~ 76 (256)
++.+...++.-+++.++ +.+|++.-. . .+.++. .....++.++|..-.+.+.+++ +++......
T Consensus 9 l~~~~~~l~~~~~l~i~~~~~lg~~~P~---~-----~~~~~~-~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l 79 (332)
T 3zux_A 9 LSKISSFIGKTFSLWAALFAAAAFFAPD---T-----FKWAGP-YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGV 79 (332)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHCGG---G-----TGGGGG-GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcch---h-----hhhhHH-HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHH
Confidence 33445556655555444 345554432 1 111221 2345677777776667666552 555443322
Q ss_pred HHHHHH-HHHHHHHHHHhcCC
Q 048649 77 ISKLII-VFVLAFWAMCSKNE 96 (256)
Q Consensus 77 ~~~l~~-~~~~~~~~~~~~~~ 96 (256)
+...+. =++++.+++.+..+
T Consensus 80 ~~~~vi~Pll~~~l~~~~~l~ 100 (332)
T 3zux_A 80 IAQFAIMPATAWCLSKLLNLP 100 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhCCC
Confidence 223222 24555666665544
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=21.34 E-value=82 Score=26.92 Aligned_cols=19 Identities=5% Similarity=-0.319 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhccCCCC
Q 048649 47 CYFTLPLFTIEFTTQVDPF 65 (256)
Q Consensus 47 ~~v~lP~lif~~~~~~~~~ 65 (256)
--+++|..++.+++.++++
T Consensus 286 t~IflP~T~IaGiyGMNf~ 304 (339)
T 4ev6_A 286 TTIFAVPMWITGIYGMNFS 304 (339)
T ss_dssp HHHSSHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHhhccCcCC
Confidence 3567899999999998876
No 4
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=17.34 E-value=71 Score=27.64 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhccCCCC
Q 048649 46 VCYFTLPLFTIEFTTQVDPF 65 (256)
Q Consensus 46 v~~v~lP~lif~~~~~~~~~ 65 (256)
+--+++|..++.+++.++++
T Consensus 309 it~IflP~T~IaGiyGMNf~ 328 (363)
T 2iub_A 309 IATIFMPLTFIAGIYGMNFE 328 (363)
T ss_dssp HHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHhhhcccCC
Confidence 34578999999999998876
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=15.57 E-value=4.9e+02 Score=21.65 Aligned_cols=25 Identities=8% Similarity=0.004 Sum_probs=18.0
Q ss_pred HHHHHHHHhhchhHHHHHHHHHHHH
Q 048649 176 MKIVWPKMAKNPNSYACILGLAWAF 200 (256)
Q Consensus 176 ~~~~~~~i~~nP~i~a~i~Gl~~~~ 200 (256)
.++..++++|+|.++...++..+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T 3o7q_A 247 FSASLSRLARIRHWRWAVLAQFCYV 271 (438)
T ss_dssp HHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhChHHHHHHHHHHHHH
Confidence 3556788899998887777755543
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=12.45 E-value=2.2e+02 Score=16.11 Aligned_cols=21 Identities=5% Similarity=-0.093 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhh
Q 048649 9 KVVEAMVPLYFALMLGYGSVK 29 (256)
Q Consensus 9 ~~~~~ilpi~lli~lG~~~~r 29 (256)
.++..+.-+.++.+++|++.|
T Consensus 16 iVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 16 VIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred eehHHHHHHHHHHHHHHHHee
Confidence 355566677778888887766
No 7
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=11.73 E-value=2e+02 Score=15.11 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhh
Q 048649 8 YKVVEAMVPLYFALMLGYGSVK 29 (256)
Q Consensus 8 ~~~~~~ilpi~lli~lG~~~~r 29 (256)
..++..+..+.-..+.||++-|
T Consensus 6 weviaglvalltflafgfwlfk 27 (32)
T 2lx0_A 6 WEVIAGLVALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778888899998755
No 8
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=7.74 E-value=4.4e+02 Score=16.21 Aligned_cols=25 Identities=4% Similarity=0.053 Sum_probs=10.6
Q ss_pred cHhHHHHHHHHHHHHHHHHHHHHHH
Q 048649 68 NYRLIGADAISKLIIVFVLAFWAMC 92 (256)
Q Consensus 68 ~~~~i~~~~~~~l~~~~~~~~~~~~ 92 (256)
.|.++.+...+.++..++.+.+-|.
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~LwK~ 33 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALWKI 33 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444444444444444343
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=7.27 E-value=4.2e+02 Score=15.55 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 048649 72 IGADAISKLIIVFVLAFWAMC 92 (256)
Q Consensus 72 i~~~~~~~l~~~~~~~~~~~~ 92 (256)
+.+..++.++...++..+.-+
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~ 34 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGIL 34 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhh
Confidence 434444544333344333333
No 10
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=4.59 E-value=5.3e+02 Score=17.40 Aligned_cols=25 Identities=8% Similarity=-0.007 Sum_probs=0.0
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHh
Q 048649 35 APEECAAVNRFVCYFTLPLFTIEFT 59 (256)
Q Consensus 35 ~~~~~~~l~~lv~~v~lP~lif~~~ 59 (256)
.++..+.=.++.+++++|+++...+
T Consensus 9 a~~~~~~Wkkis~~va~P~v~l~~~ 33 (85)
T 1v54_G 9 GGTGARTWRFLTFGLALPSVALCTL 33 (85)
T ss_dssp SCCCHHHHHHHHHHTHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Done!