Query 048649
Match_columns 256
No_of_seqs 151 out of 1058
Neff 8.2
Searched_HMMs 13730
Date Mon Mar 25 20:18:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048649.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048649hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 25.7 24 0.0018 20.9 2.7 20 46-65 12-31 (64)
2 d1v54g_ f.23.2.1 (G:) Mitochon 7.3 1.4E+02 0.01 18.7 2.6 21 39-59 13-33 (84)
3 d2e74f1 f.23.25.1 (F:1-32) Pet 5.3 2.1E+02 0.015 13.9 3.2 20 10-29 5-24 (32)
4 d1q90g_ f.23.26.1 (G:) PetG su 5.0 2.1E+02 0.015 13.9 1.8 12 186-197 3-14 (30)
5 d1no7a_ e.48.1.1 (A:) Major ca 4.3 1.9E+02 0.014 24.6 2.4 20 36-55 319-338 (562)
6 d1gtda_ d.284.1.1 (A:) PurS su 3.1 2.5E+02 0.018 17.0 1.5 15 175-189 57-71 (82)
7 d1xrxa1 a.43.1.7 (A:1-35) SeqA 3.1 3.6E+02 0.026 13.5 1.8 20 25-45 13-32 (35)
8 d1t4aa_ d.284.1.1 (A:) PurS su 2.9 2.7E+02 0.02 16.8 1.5 16 174-189 56-71 (80)
9 d1oedc_ f.36.1.1 (C:) Acetylch 2.9 3.1E+02 0.023 19.6 2.3 16 45-60 4-19 (260)
10 d1oede_ f.36.1.1 (E:) Acetylch 2.7 3.2E+02 0.024 19.6 2.1 16 45-60 4-19 (260)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=25.72 E-value=24 Score=20.87 Aligned_cols=20 Identities=15% Similarity=0.034 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhccCCCC
Q 048649 46 VCYFTLPLFTIEFTTQVDPF 65 (256)
Q Consensus 46 v~~v~lP~lif~~~~~~~~~ 65 (256)
+--+++|..+..++...+.+
T Consensus 12 it~iflP~t~i~gifGMN~~ 31 (64)
T d2iuba2 12 IATIFMPLTFIAGIYGMNFE 31 (64)
T ss_dssp HHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHhhhccCCC
Confidence 44688999999999887654
No 2
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.31 E-value=1.4e+02 Score=18.68 Aligned_cols=21 Identities=10% Similarity=0.023 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 048649 39 CAAVNRFVCYFTLPLFTIEFT 59 (256)
Q Consensus 39 ~~~l~~lv~~v~lP~lif~~~ 59 (256)
.+.=.++.+++++||++...+
T Consensus 13 ~~lWkkis~~va~P~i~l~~~ 33 (84)
T d1v54g_ 13 ARTWRFLTFGLALPSVALCTL 33 (84)
T ss_dssp HHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445567889999999988654
No 3
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.34 E-value=2.1e+02 Score=13.90 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhHhhhh
Q 048649 10 VVEAMVPLYFALMLGYGSVK 29 (256)
Q Consensus 10 ~~~~ilpi~lli~lG~~~~r 29 (256)
++++-+--|-+|.+||.++.
T Consensus 5 il~aa~lsfglifvgwglga 24 (32)
T d2e74f1 5 MLYAALLSFGLIFVGWGLGV 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhHHHH
Confidence 45555666778888887653
No 4
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.98 E-value=2.1e+02 Score=13.87 Aligned_cols=12 Identities=33% Similarity=0.559 Sum_probs=6.3
Q ss_pred chhHHHHHHHHH
Q 048649 186 NPNSYACILGLA 197 (256)
Q Consensus 186 nP~i~a~i~Gl~ 197 (256)
.|.+-++++|++
T Consensus 3 E~ll~GivlGli 14 (30)
T d1q90g_ 3 EPLLCGIVLGLV 14 (30)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHhHHHhhH
Confidence 355555555554
No 5
>d1no7a_ e.48.1.1 (A:) Major capsid protein VP5 {Herpes simplex virus 1 [TaxId: 10298]}
Probab=4.33 E-value=1.9e+02 Score=24.62 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 048649 36 PEECAAVNRFVCYFTLPLFT 55 (256)
Q Consensus 36 ~~~~~~l~~lv~~v~lP~li 55 (256)
+++...++|+-+|+.+|+..
T Consensus 319 d~e~~vL~KIfYYv~LPa~T 338 (562)
T d1no7a_ 319 GADWTVHHKIYYYVMVPAFS 338 (562)
T ss_dssp CHHHHHHHHHHHHTHHHHHH
T ss_pred chhhhhhhheeeEEEeeecc
Confidence 34556799999999999975
No 6
>d1gtda_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=3.06 E-value=2.5e+02 Score=17.03 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhchhH
Q 048649 175 LMKIVWPKMAKNPNS 189 (256)
Q Consensus 175 ~~~~~~~~i~~nP~i 189 (256)
..+.+.++++.||++
T Consensus 57 ~v~~~c~~lLaNpvI 71 (82)
T d1gtda_ 57 EVEDMCQRLLCNPVI 71 (82)
T ss_dssp HHHHHHHHTTCCTTT
T ss_pred HHHHHHHHHcCCcce
Confidence 367788999999975
No 7
>d1xrxa1 a.43.1.7 (A:1-35) SeqA {Escherichia coli [TaxId: 562]}
Probab=3.05 E-value=3.6e+02 Score=13.50 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=13.4
Q ss_pred HhhhhhccccChhhhHHHHHH
Q 048649 25 YGSVKWWKIIAPEECAAVNRF 45 (256)
Q Consensus 25 ~~~~r~~~~~~~~~~~~l~~l 45 (256)
|++.+ .+-+.++..+.+.++
T Consensus 13 yIas~-t~~iGEsaSdILRRl 32 (35)
T d1xrxa1 13 YIASH-TKHIGESASDILRRM 32 (35)
T ss_dssp HHHTT-CSSTTCCHHHHHHHH
T ss_pred HHHHh-hhHhccCHHHHHHHH
Confidence 56666 677777777666655
No 8
>d1t4aa_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Bacillus subtilis [TaxId: 1423]}
Probab=2.92 E-value=2.7e+02 Score=16.82 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhchhH
Q 048649 174 HLMKIVWPKMAKNPNS 189 (256)
Q Consensus 174 ~~~~~~~~~i~~nP~i 189 (256)
...+...++++.||++
T Consensus 56 ~~v~~~c~~lLaNpvI 71 (80)
T d1t4aa_ 56 VLVKEMCEKLLANTVI 71 (80)
T ss_dssp HHHHHHHHHTTCCTTT
T ss_pred HHHHHHHHHhcCCcce
Confidence 3467788999999975
No 9
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.90 E-value=3.1e+02 Score=19.60 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhc
Q 048649 45 FVCYFTLPLFTIEFTT 60 (256)
Q Consensus 45 lv~~v~lP~lif~~~~ 60 (256)
+++++.+||.++..++
T Consensus 4 y~~n~~~P~~~~~~l~ 19 (260)
T d1oedc_ 4 YVINFITPCVLISFLA 19 (260)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEEhHHHHHHHHHHHH
Confidence 5678888888887654
No 10
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.66 E-value=3.2e+02 Score=19.64 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhc
Q 048649 45 FVCYFTLPLFTIEFTT 60 (256)
Q Consensus 45 lv~~v~lP~lif~~~~ 60 (256)
+++++.+||.++..++
T Consensus 4 Y~~~lilP~~li~~ls 19 (260)
T d1oede_ 4 YIINIIAPCVLISSLV 19 (260)
T ss_dssp HHHHHHTHHHHHHHHH
T ss_pred EEEhHHHHHHHHHHHH
Done!