BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048650
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 9/173 (5%)
Query: 2 NNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSF-FRINHYPSCCNNNTTRV 60
+ Y + +R LA ++ ++ GL + +P K + +E +IN+YP C +
Sbjct: 170 SEYAKCLRLLATKVFKALSVGLGL-EPDRLEKEVGGLEELLLQMKINYYPKCPQPELA-L 227
Query: 61 GFGEHSDPQILTILRSNDVGGLQISPDHGVWIPV--APDSAAFCVNVGDVLQAMTNGRFV 118
G H+D LT + N V GLQ+ + G W+ PDS +++GD L+ ++NG++
Sbjct: 228 GVEAHTDVSALTFILHNMVPGLQLFYE-GKWVTAKCVPDS--IVMHIGDTLEILSNGKYK 284
Query: 119 SVRHRALSYSSQSRMSMAYFGAPALQARVSAP-PEMVTTNRPSLYRPFTWAEY 170
S+ HR L + R+S A F P V P PEMV+ P+ + P T+A++
Sbjct: 285 SILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQH 337
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 9/173 (5%)
Query: 2 NNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSF-FRINHYPSCCNNNTTRV 60
+ Y + +R LA ++ ++ GL + +P K + +E +IN+YP C +
Sbjct: 169 SEYAKCLRLLATKVFKALSVGLGL-EPDRLEKEVGGLEELLLQMKINYYPKCPQPELA-L 226
Query: 61 GFGEHSDPQILTILRSNDVGGLQISPDHGVWIPV--APDSAAFCVNVGDVLQAMTNGRFV 118
G H+D LT + N V GLQ+ + G W+ PDS +++GD L+ ++NG++
Sbjct: 227 GVEAHTDVSALTFILHNMVPGLQLFYE-GKWVTAKCVPDS--IVMHIGDTLEILSNGKYK 283
Query: 119 SVRHRALSYSSQSRMSMAYFGAPALQARVSAP-PEMVTTNRPSLYRPFTWAEY 170
S+ HR L + R+S A F P V P PEMV+ P+ + P T+A++
Sbjct: 284 SILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQH 336
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 8/173 (4%)
Query: 3 NYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSF-FRINHYPSCCNNNTTRVG 61
++ + + +LA E+LDL+ E L + + Y + +F ++++YP C + + G
Sbjct: 116 DFAKRLEKLAEELLDLLCENLGL-EKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIK-G 173
Query: 62 FGEHSDPQ-ILTILRSNDVGGLQISPDHGVWIPVAPDSAAFCVNVGDVLQAMTNGRFVSV 120
H+D I+ + + + V GLQ+ D G WI V P + VN+GD L+ +TNG++ SV
Sbjct: 174 LRAHTDAGGIILLFQDDKVSGLQLLKD-GQWIDVPPXRHSIVVNLGDQLEVITNGKYKSV 232
Query: 121 RHRALSYSSQSRMSMAYFGAPALQARVSAPPEMV---TTNRPSLYRPFTWAEY 170
HR ++ +R S+A F P A + P +V +Y F + +Y
Sbjct: 233 XHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDY 285
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 87/173 (50%), Gaps = 9/173 (5%)
Query: 2 NNYIRAVRELACEILDLMAEGLWVRDPSYFSKMIRDVENDSF-FRINHYPSCCNNNTTRV 60
+ Y + +R LA ++ ++ GL + +P K + +E +IN+YP C +
Sbjct: 170 SEYAKCLRLLATKVFKALSVGLGL-EPDRLEKEVGGLEELLLQXKINYYPKCPQPELA-L 227
Query: 61 GFGEHSDPQILTILRSNDVGGLQISPDHGVWIPV--APDSAAFCVNVGDVLQAMTNGRFV 118
G H+D LT + N V GLQ+ + G W+ PDS ++GD L+ ++NG++
Sbjct: 228 GVEAHTDVSALTFILHNXVPGLQLFYE-GKWVTAKCVPDS--IVXHIGDTLEILSNGKYK 284
Query: 119 SVRHRALSYSSQSRMSMAYFGAPALQARVSAP-PEMVTTNRPSLYRPFTWAEY 170
S+ HR L + R+S A F P V P PE V+ P+ + P T+A++
Sbjct: 285 SILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQH 337
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 30 YFSKMIRDVENDSFFRINHYPSCCNNNTTRVGFGEHSDPQILTILRSNDVGGLQISPDHG 89
+F ++D +S R+ HYP + T V G H D +T+L + GGL++ G
Sbjct: 159 FFKPTVQD--GNSVLRLLHYPPIPKD-ATGVRAGAHGDINTITLLLGAEEGGLEVLDRDG 215
Query: 90 VWIPVAPDSAAFCVNVGDVLQAMTNGRFVSVRHRALSYSSQSR 132
W+P+ P +N+GD L+ +TN S HR ++ + R
Sbjct: 216 QWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERR 258
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 40 NDSFFRINHYPSCCNNNTT-RVGFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDS 98
+ + RI HYP + + H D ++T+L + + GLQ+ G W+ V D
Sbjct: 148 HKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDF 207
Query: 99 AAFCVNVGDVLQAMTNGRFVSVRHRAL----SYSSQSRMSMAYFGAP 141
+N+GD LQ ++G F S HR + + ++SR+S+ F P
Sbjct: 208 GNIIINIGDXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHP 254
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 TRVGFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDSAAFCVNVGDVLQAMTNGRF 117
T++ F H D ++T+L ++V LQ+ G + + D + +N G + +TN +
Sbjct: 207 TKLSFEWHEDVSLITVLYQSNVQNLQVETAAG-YQDIEADDTGYLINCGSYMAHLTNNYY 265
Query: 118 VSVRHRALSYSSQSRMSMAYF 138
+ HR + + + R S+ +F
Sbjct: 266 KAPIHR-VKWVNAERQSLPFF 285
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 58 TRVGFGEHSDPQILTILRSNDVGGLQISPDHGVWIPVAPDSAAFCVNVGDVLQAMTNGRF 117
T++ F H D ++T+L ++V LQ+ G + + D + +N G + +TN +
Sbjct: 207 TKLSFEWHEDVSLITVLYQSNVQNLQVETAAG-YQDIEADDTGYLINCGSYMAHLTNNYY 265
Query: 118 VSVRHRALSYSSQSRMSMAYF 138
+ HR + + + R S+ +F
Sbjct: 266 KAPIHR-VKWVNAERQSLPFF 285
>pdb|1DP4|A Chain A, Dimerized Hormone Binding Domain Of The Atrial Natriuretic
Peptide Receptor
pdb|1DP4|C Chain C, Dimerized Hormone Binding Domain Of The Atrial Natriuretic
Peptide Receptor
pdb|1T34|A Chain A, Rotation Mechanism For Transmembrane Signaling By The
Atrial Natriuretic Peptide Receptor
pdb|1T34|B Chain B, Rotation Mechanism For Transmembrane Signaling By The
Atrial Natriuretic Peptide Receptor
pdb|3A3K|A Chain A, Reversibly Bound Chloride In The Atrial Natriuretic
Peptide Receptor Hormone-Binding Domain
pdb|3A3K|B Chain B, Reversibly Bound Chloride In The Atrial Natriuretic
Peptide Receptor Hormone-Binding Domain
Length = 435
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 20/101 (19%)
Query: 98 SAAFCVNVGDVLQAMTNGRFVSVRHRALSYSSQSRMSMAYFGAPALQARVSAPPEMVTTN 157
S A + G V A GRF ++ R+ + GAPAL V + T
Sbjct: 77 SPAVFLGPGCVYSAAPVGRF----------TAHWRVPLLTAGAPALGIGVKDEYALTTRT 126
Query: 158 RPS----------LYRPFTWAEYKATAYSLSLGDNRLDLFI 188
PS L+R W Y+ LGD+R FI
Sbjct: 127 GPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPCFFI 167
>pdb|2YPD|A Chain A, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
pdb|2YPD|B Chain B, Crystal Structure Of The Jumonji Domain Of Human Jumonji
Domain Containing 1c Protein
Length = 392
Score = 26.6 bits (57), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Query: 170 YKATAYSLSLGDNRLDLFINCKD 192
+KA + SL GD++ DL +NCKD
Sbjct: 51 WKAESISLDFGDHQADL-LNCKD 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,144,882
Number of Sequences: 62578
Number of extensions: 233702
Number of successful extensions: 432
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 420
Number of HSP's gapped (non-prelim): 10
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)