BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048651
(134 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KR0|A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag
Length = 273
Score = 125 bits (313), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 83/129 (64%), Gaps = 23/129 (17%)
Query: 26 GITIYWVQNGIQSTFMETCTTSNYDFVNLAF-----------------CPPLE----IID 64
GI IYW QNG + T +TC+T Y +VN+AF C P I+
Sbjct: 2 GIAIYWGQNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQINLAGHCNPAAGGCTIVS 61
Query: 65 --IKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDG 122
I+SCQ +G+KVMLS+ GG G+Y L+ DA+ VADYLWNNFLGG+SSSRPLG+AVLDG
Sbjct: 62 NGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNVADYLWNNFLGGKSSSRPLGDAVLDG 121
Query: 123 IDFGIEGGT 131
IDF IE G+
Sbjct: 122 IDFAIEHGS 130
>pdb|1HVQ|A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein
With Chitinase And Lysozyme Activity, And Its Complex
With An Inhibitor
pdb|1LLO|A Chain A, Hevamine A (A Plant EndochitinaseLYSOZYME) COMPLEXED WITH
Allosamidin
pdb|2HVM|A Chain A, Hevamine A At 1.8 Angstrom Resolution
Length = 273
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 83/129 (64%), Gaps = 23/129 (17%)
Query: 26 GITIYWVQNGIQSTFMETCTTSNYDFVNLAF-----------------CPPL----EIID 64
GI IYW QNG + T +TC+T Y +VN+AF C P I+
Sbjct: 2 GIAIYWGQNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQINLAGHCNPAAGGCTIVS 61
Query: 65 --IKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDG 122
I+SCQ +G+KVMLS+ GG G+Y L+ DA+ VADYLWNNFLGG+SSSRPLG+AVLDG
Sbjct: 62 NGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNVADYLWNNFLGGKSSSRPLGDAVLDG 121
Query: 123 IDFGIEGGT 131
IDF IE G+
Sbjct: 122 IDFDIEHGS 130
>pdb|1KR1|A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag
Length = 273
Score = 122 bits (307), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 82/129 (63%), Gaps = 23/129 (17%)
Query: 26 GITIYWVQNGIQSTFMETCTTSNYDFVNLAF-----------------CPPLE----IID 64
GI IYW QNG + T +TC+T Y +VN+AF C P I+
Sbjct: 2 GIAIYWGQNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQINLAGHCNPAAGGCTIVS 61
Query: 65 --IKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDG 122
I+SCQ +G+KVMLS+ GG G+Y L+ DA+ VADYLWNNFLGG+SSSRPLG+AVLDG
Sbjct: 62 NGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNVADYLWNNFLGGKSSSRPLGDAVLDG 121
Query: 123 IDFGIEGGT 131
IDF I G+
Sbjct: 122 IDFAIAHGS 130
>pdb|1KQY|A Chain A, Hevamine Mutant D125aE127AY183F IN COMPLEX WITH PENTA-Nag
pdb|1KQZ|A Chain A, Hevamine Mutant D125aE127AY183F IN COMPLEX WITH TETRA-Nag
Length = 273
Score = 122 bits (307), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/129 (51%), Positives = 82/129 (63%), Gaps = 23/129 (17%)
Query: 26 GITIYWVQNGIQSTFMETCTTSNYDFVNLAF-----------------CPPLE----IID 64
GI IYW QNG + T +TC+T Y +VN+AF C P I+
Sbjct: 2 GIAIYWGQNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQINLAGHCNPAAGGCTIVS 61
Query: 65 --IKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDG 122
I+SCQ +G+KVMLS+ GG G+Y L+ DA+ VADYLWNNFLGG+SSSRPLG+AVLDG
Sbjct: 62 NGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNVADYLWNNFLGGKSSSRPLGDAVLDG 121
Query: 123 IDFGIEGGT 131
IDF I G+
Sbjct: 122 IDFAIAHGS 130
>pdb|2GSJ|A Chain A, Cdna Cloning And 1.75a Crystal Structure Determination Of
Ppl2, A Novel Chimerolectin From Parkia Platycephala
Seeds Exhibiting Endochitinolytic Activity
Length = 271
Score = 122 bits (306), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 81/128 (63%), Gaps = 23/128 (17%)
Query: 26 GITIYWVQNGIQSTFMETCTTSNYDFVNLAF-----------------CPPLE-----II 63
GI +YW QNG + T TC + Y VN+AF C P +
Sbjct: 2 GIVVYWGQNGGEGTLTSTCESGLYQIVNIAFLSQFGGGRRPQINLAGHCDPANNGCRTVS 61
Query: 64 D-IKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDG 122
D I++CQ +G+KVMLSI GGAG+Y LS +DAR VADY+WNNFLGG+SSSRPLG+AVLDG
Sbjct: 62 DGIRACQRRGIKVMLSIGGGAGSYSLSSVQDARSVADYIWNNFLGGRSSSRPLGDAVLDG 121
Query: 123 IDFGIEGG 130
+DF IE G
Sbjct: 122 VDFDIEHG 129
>pdb|3D5H|A Chain A, Crystal Structure Of Haementhin From Haemanthus
Multiflorus At 2.0a Resolution: Formation Of A Novel
Loop On A Tim Barrel Fold And Its Functional
Significance
pdb|3HU7|A Chain A, Structural Characterization And Binding Studies Of A Plant
Pathogenesis Related Protein Heamanthin From Haemanthus
Multiflorus Reveal Its Dual Inhibitory Effects Against
Xylanase And Alpha-Amylase
pdb|3M7S|A Chain A, Crystal Structure Of The Complex Of Xylanase Gh-11 And
Alpha Amylase Inhibitor Protein With Cellobiose At 2.4 A
Resolution
pdb|3OIH|A Chain A, Crystal Structure Of The Complex Of Xylanase-Alpha-Amylase
Inhibitor Protein (Xaip-I) With Trehalose At 1.87 A
Resolution
Length = 272
Score = 92.4 bits (228), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 67/123 (54%), Gaps = 19/123 (15%)
Query: 27 ITIYWVQNGIQSTFMETCTTSNYDFVNLAF--------CPPLEI---------IDIKSCQ 69
I +YW QN + + TC T NY +V + F P L+I IK CQ
Sbjct: 5 IAVYWGQNFDERSLEATCDTGNYAYVIIGFLNTFGGGQTPALDISGHSPSGLEPQIKHCQ 64
Query: 70 AKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFL--GGQSSSRPLGNAVLDGIDFGI 127
+K VKV+LSI G G Y L DA +A YL+NNFL G S +RP GNAVLDGIDF I
Sbjct: 65 SKNVKVLLSIGGPKGPYSLDSRSDANDLAVYLFNNFLLPPGHSENRPFGNAVLDGIDFHI 124
Query: 128 EGG 130
E G
Sbjct: 125 EHG 127
>pdb|3O9N|A Chain A, Crystal Structure Of A New Form Of Xylanase-A-Amylase
Inhibitor Protein(Xaip-Iii) At 2.4 A Resolution
Length = 272
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 67/123 (54%), Gaps = 19/123 (15%)
Query: 27 ITIYWVQNGIQSTFMETCTTSNYDFVNLAF--------CPPLEI---------IDIKSCQ 69
I +YW QN + + TC + NY +V + F P L+I IK CQ
Sbjct: 5 IAVYWGQNFDERSLEATCDSGNYAYVIIGFLNTFGGGQTPALDISGHSPSGLEPQIKHCQ 64
Query: 70 AKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFL--GGQSSSRPLGNAVLDGIDFGI 127
+K VKV+LSI G AG Y L DA +A YL+NNFL G S + P GNAVLDGIDF I
Sbjct: 65 SKNVKVLLSIGGPAGPYSLDSRSDANDLAVYLFNNFLLPPGHSENNPFGNAVLDGIDFHI 124
Query: 128 EGG 130
E G
Sbjct: 125 EHG 127
>pdb|3MU7|A Chain A, Crystal Structure Of The Xylanase And Alpha-Amylase
Inhibitor Protein (Xaip-Ii) From Scadoxus Multiflorus At
1.2 A Resolution
Length = 273
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 66/124 (53%), Gaps = 20/124 (16%)
Query: 27 ITIYWVQNGIQSTFMETCTTSNYDFVNLAF--------CPPLEI---------IDIKSCQ 69
I +YW Q+ + + TC + NY +V + F P L+I IK CQ
Sbjct: 5 IAVYWGQSFDERSLEATCDSGNYAYVIIGFLNTFGGGQTPALDISGHSPKGLEPQIKHCQ 64
Query: 70 AKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFL---GGQSSSRPLGNAVLDGIDFG 126
+K VKV+LSI G AG Y L DA +A YL NFL G S SRP GNAVLDGIDF
Sbjct: 65 SKNVKVLLSIGGPAGPYSLDSRNDANDLAVYLHKNFLLPPAGTSESRPFGNAVLDGIDFH 124
Query: 127 IEGG 130
IE G
Sbjct: 125 IEHG 128
>pdb|1OM0|A Chain A, Crystal Structure Of Xylanase Inhibitor Protein (Xip-I)
From Wheat
pdb|1TA3|A Chain A, Crystal Structure Of Xylanase (Gh10) In Complex With
Inhibitor (Xip)
pdb|1TE1|A Chain A, Crystal Structure Of Family 11 Xylanase In Complex With
Inhibitor (xip-i)
Length = 274
Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 64/129 (49%), Gaps = 25/129 (19%)
Query: 27 ITIYWVQNGIQSTFMETCTTSNYDFVNLAFCPPLEII--------------------DIK 66
+T++W +N + + E C + Y V ++F L++ DIK
Sbjct: 8 VTVFWGRNKAEGSLREACDSGMYTMVTMSF---LDVFGANGKYHLDLSGHDLSSVGADIK 64
Query: 67 SCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSS--RPLGNAVLDGID 124
CQ+KGV V LSI G Y L + A + D+LWN++ GG S RP G+A LDG+D
Sbjct: 65 HCQSKGVPVSLSIGGYGTGYSLPSNRSALDLFDHLWNSYFGGSKPSVPRPFGDAWLDGVD 124
Query: 125 FGIEGGTIA 133
+E GT A
Sbjct: 125 LFLEHGTPA 133
>pdb|2UY2|A Chain A, Sccts1_apo Crystal Structure
pdb|2UY3|A Chain A, Sccts1_8-Chlorotheophylline Crystal Structure
pdb|2UY4|A Chain A, Sccts1_acetazolamide Crystal Structure
pdb|2UY5|A Chain A, Sccts1_kinetin Crystal Structure
Length = 294
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 27/131 (20%)
Query: 25 SGITIYWVQN--GIQSTFMETCTTSNYDFVNLAFCPPLEII------------------- 63
+ I +YW QN G Q + C +S+ D L+F +
Sbjct: 6 TNIAVYWGQNSAGTQESLATYCESSDADIFLLSFLNQFPTLGLNFANACSDTFSDGLLHC 65
Query: 64 -----DIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNF-LGGQSSSRPLGN 117
DI++CQ+ G KV+LS+ G +G+Y S A A LW+ F G +S RP +
Sbjct: 66 TQIAEDIETCQSLGKKVLLSLGGASGSYLFSDDSQAETFAQTLWDTFGEGTGASERPFDS 125
Query: 118 AVLDGIDFGIE 128
AV+DG DF IE
Sbjct: 126 AVVDGFDFDIE 136
>pdb|1CNV|A Chain A, Crystal Structure Of Concanavalin B At 1.65 A Resolution
Length = 299
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 27/130 (20%)
Query: 24 ASGITIYWVQNGIQSTFMETCTTSNYDFVNLAFC---------PPLEI------------ 62
++ I +YW Q +TC T+NY V ++F P LE+
Sbjct: 4 STEIAVYWGQRE-DGLLRDTCKTNNYKIVFISFLDKFGCEIRKPELELEGVCGPSVGNPC 62
Query: 63 ----IDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNA 118
IK CQ GVKV L++ G G Y ++ A+ +A+YL FL + PLG
Sbjct: 63 SFLESQIKECQRMGVKVFLALGGPKGTYSACSADYAKDLAEYLHTYFLSERREG-PLGKV 121
Query: 119 VLDGIDFGIE 128
LDGI F I+
Sbjct: 122 ALDGIHFDIQ 131
>pdb|2XVN|A Chain A, A. Fumigatus Chitinase A1 Phenyl-Methylguanylurea Complex
pdb|2XVN|B Chain B, A. Fumigatus Chitinase A1 Phenyl-Methylguanylurea Complex
pdb|2XVN|C Chain C, A. Fumigatus Chitinase A1 Phenyl-Methylguanylurea Complex
Length = 309
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 64 DIKSCQAKGVKVMLSIEGGAGNYYLSFSED-ARQVADYLWNNF---LGGQSSSRPLGNAV 119
DI CQA G KV+LSI G SED A A +LW F G RP G+ V
Sbjct: 78 DIPICQAAGKKVLLSIGGAYPPDQSILSEDSAVAFATFLWGAFGPVAEGWEGPRPFGDVV 137
Query: 120 LDGIDFGIE 128
+DG DF IE
Sbjct: 138 VDGFDFDIE 146
>pdb|2XUC|A Chain A, Natural Product-Guided Discovery Of A Fungal Chitinase
Inhibitor
pdb|2XUC|B Chain B, Natural Product-Guided Discovery Of A Fungal Chitinase
Inhibitor
pdb|2XUC|C Chain C, Natural Product-Guided Discovery Of A Fungal Chitinase
Inhibitor
pdb|2XVP|A Chain A, Chia1 From Aspergillus Fumigatus, Apostructure
pdb|2XVP|B Chain B, Chia1 From Aspergillus Fumigatus, Apostructure
pdb|2XTK|A Chain A, Chia1 From Aspergillus Fumigatus In Complex With
Acetazolamide
pdb|2XTK|B Chain B, Chia1 From Aspergillus Fumigatus In Complex With
Acetazolamide
Length = 310
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 64 DIKSCQAKGVKVMLSIEGGAGNYYLSFSED-ARQVADYLWNNF---LGGQSSSRPLGNAV 119
DI CQA G KV+LSI G SED A A +LW F G RP G+ V
Sbjct: 79 DIPICQAAGKKVLLSIGGAYPPDQSILSEDSAVAFATFLWGAFGPVAEGWEGPRPFGDVV 138
Query: 120 LDGIDFGIE 128
+DG DF IE
Sbjct: 139 VDGFDFDIE 147
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 29.3 bits (64), Expect = 0.63, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 64 DIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYL 101
D+K Q G+ V S G GNY + +ED ++ AD L
Sbjct: 167 DLKDFQKDGLTVQFS--GAVGNYCILTTEDEKKAADIL 202
>pdb|3QTD|A Chain A, Crystal Structure Of Putative Modulator Of Gyrase (Pmba)
From Pseudomonas Aeruginosa Pao1
pdb|3QTD|B Chain B, Crystal Structure Of Putative Modulator Of Gyrase (Pmba)
From Pseudomonas Aeruginosa Pao1
pdb|3QTD|C Chain C, Crystal Structure Of Putative Modulator Of Gyrase (Pmba)
From Pseudomonas Aeruginosa Pao1
pdb|3QTD|D Chain D, Crystal Structure Of Putative Modulator Of Gyrase (Pmba)
From Pseudomonas Aeruginosa Pao1
Length = 449
Score = 28.1 bits (61), Expect = 1.7, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 16 LKLMTGDDASGITIYWVQNG-IQSTFMETCTTSN 48
+ L+TGD + G YWV+NG IQ E +N
Sbjct: 380 VNLVTGDYSRGAAGYWVENGEIQFPVQEVTIAAN 413
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 2 ALKSSISVLLFCAVLKLMTGD--DASGITIY-WVQNGIQSTFMETCTTSNYDFVNLAFCP 58
AL +SI VL L D++G Y W+ NGI E ++N D +N++
Sbjct: 74 ALNNSIGVLGVAPSASLYAVKVLDSTGSGQYSWIINGI-----EWAISNNMDVINMSLGG 128
Query: 59 PLEIIDIKSCQAKGVKVMLSIEGGAGN 85
P +K+ K V + + AGN
Sbjct: 129 PTGSTALKTVVDKAVSSGIVVAAAAGN 155
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 2 ALKSSISVLLFCAVLKLMTGD--DASGITIY-WVQNGIQSTFMETCTTSNYDFVNLAFCP 58
AL +SI VL L D++G Y W+ NGI E ++N D +N++
Sbjct: 74 ALNNSIGVLGVAPSASLYAVKVLDSTGSGQYSWIINGI-----EWAISNNMDVINMSLGG 128
Query: 59 PLEIIDIKSCQAKGVKVMLSIEGGAGN 85
P +K+ K V + + AGN
Sbjct: 129 PTGSTALKTVVDKAVSSGIVVAAAAGN 155
>pdb|1C8Y|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130a Mutant
Length = 265
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 27/77 (35%)
Query: 62 IIDIKSCQAKGVKVMLSIEG---GAGNYYLSFSEDARQVADYLWNNFLGGQSSS---RPL 115
+ I+ Q +G+KV+LS+ G GAG + NF Q++S + L
Sbjct: 68 VTQIRPLQQQGIKVLLSVLGNHQGAG-----------------FANFPSQQAASAFAKQL 110
Query: 116 GNAV----LDGIDFGIE 128
+AV LDG+DF E
Sbjct: 111 SDAVAKYGLDGVDFADE 127
>pdb|1C3F|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130n Mutant
Length = 265
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 27/77 (35%)
Query: 62 IIDIKSCQAKGVKVMLSIEG---GAGNYYLSFSEDARQVADYLWNNFLGGQSSS---RPL 115
+ I+ Q +G+KV+LS+ G GAG + NF Q++S + L
Sbjct: 68 VTQIRPLQQQGIKVLLSVLGNHQGAG-----------------FANFPSQQAASAFAKQL 110
Query: 116 GNAV----LDGIDFGIE 128
+AV LDG+DF E
Sbjct: 111 SDAVAKYGLDGVDFNDE 127
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 26.9 bits (58), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 2 ALKSSISVLLFCAVLKLMTGD--DASGITIY-WVQNGIQSTFMETCTTSNYDFVNLAFCP 58
AL +SI VL L D++G Y W+ NGI E ++N D +N++
Sbjct: 74 ALNNSIGVLGVSPSASLYAVKVLDSTGSGQYSWIINGI-----EWAISNNMDVINMSLGG 128
Query: 59 PLEIIDIKSCQAKGVKVMLSIEGGAGN 85
P +K+ K V + + AGN
Sbjct: 129 PTGSTALKTVVDKAVSSGIVVAAAAGN 155
>pdb|1V0R|A Chain A, Tungstate-Inhibited Phospholipase D From Streptomyces Sp.
Strain Pmf
pdb|1V0S|A Chain A, Uninhibited Form Of Phospholipase D From Streptomyces Sp.
Strain Pmf
pdb|1V0T|A Chain A, Phospholipase D From Streptomyces Sp. Strain Pmf Soaked
With The Product Glycerophosphate
pdb|1V0U|A Chain A, Phospholipase D From Streptomyces Sp. Strain Pmf Soaked
With The Product Glycerophosphate.
pdb|1V0V|A Chain A, Phospholipase D From Streptomyces Sp. Strain Pmf Soaked
With The Substrate Dibutyrylphosphatidylcholine.
pdb|1V0W|A Chain A, Phospholipase D From Streptomyces Sp. Strain Pmf Soaked
With The Substrate Dibutyrylphosphatidylcholine.
pdb|1V0Y|A Chain A, Phospholipase D From Streptomyces Sp. Strain Pmf Soaked
With The Substrate Dibutyrylphosphatidylcholine
Length = 506
Score = 26.6 bits (57), Expect = 4.4, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 55 AFCPPLEIIDIK------SCQAKGVKVMLSI-----EGGAGNYYLSFSEDARQVADYLWN 103
A CPPL DI+ + A GVKV + + G G+ S + +++D L N
Sbjct: 339 ATCPPLPRYDIRLYDALAAKMAAGVKVRIVVSDPANRGAVGSGGYSQIKSLSEISDTLRN 398
Query: 104 ---NFLGGQSSSR 113
N GGQ +++
Sbjct: 399 RLANITGGQQAAK 411
>pdb|1F0I|A Chain A, The First Crystal Structure Of A Phospholipase D
Length = 504
Score = 26.6 bits (57), Expect = 4.6, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 55 AFCPPLEIIDIK------SCQAKGVKVMLSI-----EGGAGNYYLSFSEDARQVADYLWN 103
A CPPL DI+ + A GVKV + + G G+ S + +++D L N
Sbjct: 337 ATCPPLPRYDIRLYDALAAKMAAGVKVRIVVSDPANRGAVGSGGYSQIKSLSEISDTLRN 396
Query: 104 ---NFLGGQSSSR 113
N GGQ +++
Sbjct: 397 RLANITGGQQAAK 409
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,020,758
Number of Sequences: 62578
Number of extensions: 149960
Number of successful extensions: 406
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 50
length of query: 134
length of database: 14,973,337
effective HSP length: 88
effective length of query: 46
effective length of database: 9,466,473
effective search space: 435457758
effective search space used: 435457758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)