Query 048651
Match_columns 134
No_of_seqs 124 out of 623
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 11:38:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4701 Chitinase [Cell wall/m 100.0 2.5E-42 5.5E-47 298.4 9.7 116 18-133 20-164 (568)
2 cd02877 GH18_hevamine_XipI_cla 100.0 6.5E-39 1.4E-43 264.5 11.8 108 25-132 1-134 (280)
3 cd02871 GH18_chitinase_D-like 99.8 1.4E-18 3.1E-23 143.8 9.6 95 26-132 2-123 (312)
4 cd06546 GH18_CTS3_chitinase GH 99.6 5.6E-15 1.2E-19 120.2 9.0 95 27-131 2-124 (256)
5 cd06543 GH18_PF-ChiA-like PF-C 99.6 5.6E-15 1.2E-19 123.0 7.6 86 37-132 14-117 (294)
6 cd06542 GH18_EndoS-like Endo-b 99.6 1.4E-14 2.9E-19 115.5 8.5 93 27-131 3-116 (255)
7 COG3469 Chitinase [Carbohydrat 99.5 1.9E-14 4.2E-19 120.2 6.6 97 24-133 25-148 (332)
8 cd06545 GH18_3CO4_chitinase Th 99.4 6.4E-13 1.4E-17 106.5 7.9 95 27-131 1-111 (253)
9 cd00598 GH18_chitinase-like Th 99.4 2.2E-12 4.7E-17 98.4 9.1 96 27-132 1-117 (210)
10 PF00704 Glyco_hydro_18: Glyco 99.2 3.9E-11 8.5E-16 97.2 5.7 95 26-132 2-128 (343)
11 cd02879 GH18_plant_chitinase_c 98.8 1.9E-08 4.1E-13 83.1 9.3 95 26-131 4-120 (299)
12 cd02878 GH18_zymocin_alpha Zym 98.7 5.3E-08 1.1E-12 81.9 9.0 94 27-131 2-119 (345)
13 smart00636 Glyco_18 Glycosyl h 98.7 8.2E-08 1.8E-12 78.9 9.1 96 26-132 1-120 (334)
14 cd06544 GH18_narbonin Narbonin 98.7 4.2E-08 9.2E-13 80.3 6.9 90 32-131 7-125 (253)
15 cd02872 GH18_chitolectin_chito 98.6 1.2E-07 2.7E-12 79.0 8.2 76 46-131 25-124 (362)
16 COG3325 ChiA Chitinase [Carboh 98.6 2.2E-07 4.9E-12 81.9 8.5 99 23-132 36-180 (441)
17 cd06548 GH18_chitinase The GH1 98.6 2.8E-07 6E-12 76.4 8.7 57 65-131 75-137 (322)
18 cd02874 GH18_CFLE_spore_hydrol 98.5 5.5E-07 1.2E-11 73.9 9.0 94 26-131 3-115 (313)
19 cd02873 GH18_IDGF The IDGF's ( 98.4 5.1E-07 1.1E-11 78.0 7.2 74 48-131 30-133 (413)
20 cd02875 GH18_chitobiase Chitob 97.9 1.9E-05 4E-10 67.2 6.2 71 47-131 54-124 (358)
21 KOG2806 Chitinase [Carbohydrat 97.9 3.3E-05 7.2E-10 67.4 7.6 82 39-131 72-175 (432)
22 cd02876 GH18_SI-CLP Stabilin-1 97.8 5.1E-05 1.1E-09 62.8 6.6 94 26-131 4-121 (318)
23 cd06549 GH18_trifunctional GH1 97.0 0.0023 5E-08 52.9 7.1 81 39-131 16-116 (298)
24 cd02069 methionine_synthase_B1 94.1 0.15 3.3E-06 40.8 5.9 56 28-83 119-178 (213)
25 cd02070 corrinoid_protein_B12- 94.1 0.16 3.6E-06 39.7 6.0 56 28-83 113-174 (201)
26 cd06523 GH25_PlyB-like PlyB is 90.7 1.1 2.4E-05 34.4 6.5 51 47-105 21-80 (177)
27 PRK02261 methylaspartate mutas 89.3 0.65 1.4E-05 34.8 4.2 60 24-83 30-94 (137)
28 cd02067 B12-binding B12 bindin 88.8 0.82 1.8E-05 32.3 4.2 56 28-83 30-90 (119)
29 cd02071 MM_CoA_mut_B12_BD meth 87.4 0.92 2E-05 32.7 3.8 58 26-83 28-90 (122)
30 TIGR02370 pyl_corrinoid methyl 86.9 1 2.2E-05 35.3 4.1 56 28-83 115-176 (197)
31 cd06415 GH25_Cpl1-like Cpl-1 l 85.0 4.5 9.7E-05 31.4 6.8 51 47-105 20-80 (196)
32 cd06547 GH85_ENGase Endo-beta- 84.0 1.5 3.2E-05 37.6 4.0 59 63-131 50-115 (339)
33 cd06417 GH25_LysA-like LysA is 81.0 2.2 4.7E-05 33.0 3.6 42 56-105 33-74 (195)
34 PRK09490 metH B12-dependent me 80.9 3.9 8.4E-05 41.0 6.0 75 28-102 782-876 (1229)
35 PF03537 Glyco_hydro_114: Glyc 79.6 3.4 7.4E-05 27.9 3.8 34 46-82 24-61 (74)
36 cd05561 Peptidases_S8_4 Peptid 79.4 3.1 6.7E-05 33.1 4.1 41 42-82 87-130 (239)
37 PF13407 Peripla_BP_4: Peripla 79.3 4.1 9E-05 31.1 4.7 70 37-106 44-120 (257)
38 PRK15312 antimicrobial resista 77.3 1.9 4E-05 37.0 2.4 58 28-86 207-283 (298)
39 cd07491 Peptidases_S8_7 Peptid 76.3 3 6.5E-05 33.6 3.3 40 43-82 97-146 (247)
40 cd06524 GH25_YegX-like YegX is 76.0 7.3 0.00016 29.9 5.2 51 47-105 24-81 (194)
41 PF07395 Mig-14: Mig-14; Inte 75.4 2.3 4.9E-05 35.9 2.4 26 61-86 226-251 (264)
42 cd06591 GH31_xylosidase_XylS X 74.6 16 0.00035 30.5 7.3 61 59-129 66-159 (319)
43 TIGR02082 metH 5-methyltetrahy 74.0 8.8 0.00019 38.3 6.3 75 28-102 763-857 (1178)
44 cd06414 GH25_LytC-like The Lyt 73.3 13 0.00029 28.5 6.1 50 48-105 22-83 (191)
45 PF01183 Glyco_hydro_25: Glyco 70.2 7.7 0.00017 29.3 4.0 42 56-105 33-77 (181)
46 PF07287 DUF1446: Protein of u 69.9 6.1 0.00013 34.5 3.8 56 26-84 3-83 (362)
47 cd06522 GH25_AtlA-like AtlA is 68.9 10 0.00023 29.3 4.6 51 47-105 24-83 (192)
48 cd06525 GH25_Lyc-like Lyc mura 68.2 11 0.00024 28.8 4.5 50 48-105 21-77 (184)
49 cd06602 GH31_MGAM_SI_GAA This 67.6 29 0.00063 29.4 7.4 64 57-130 64-166 (339)
50 COG1523 PulA Type II secretory 67.2 17 0.00037 34.4 6.4 19 61-79 267-285 (697)
51 PF04309 G3P_antiterm: Glycero 65.8 11 0.00024 29.8 4.2 54 38-98 10-67 (175)
52 COG1979 Uncharacterized oxidor 65.5 8.3 0.00018 34.1 3.7 70 48-117 56-132 (384)
53 cd06167 LabA_like LabA_like pr 63.1 17 0.00036 26.2 4.5 32 47-78 98-129 (149)
54 PTZ00066 pyruvate kinase; Prov 62.9 16 0.00035 33.4 5.2 41 63-103 299-341 (513)
55 PF00150 Cellulase: Cellulase 62.9 24 0.00053 27.3 5.7 22 61-82 64-85 (281)
56 cd06412 GH25_CH-type CH-type ( 62.8 7.5 0.00016 30.2 2.7 28 48-75 22-55 (199)
57 cd06413 GH25_muramidase_1 Unch 62.6 12 0.00026 28.8 3.9 29 47-75 23-57 (191)
58 cd00599 GH25_muramidase Endo-N 62.5 19 0.00041 27.1 4.9 51 47-105 20-77 (186)
59 PLN02522 ATP citrate (pro-S)-l 62.1 17 0.00036 34.0 5.3 62 20-82 45-113 (608)
60 TIGR00640 acid_CoA_mut_C methy 61.7 11 0.00025 27.9 3.4 56 28-83 33-93 (132)
61 KOG3314 Ku70-binding protein [ 58.3 15 0.00032 29.6 3.7 39 73-118 155-193 (194)
62 PF01936 NYN: NYN domain; Int 58.0 11 0.00025 26.5 2.8 40 40-79 87-126 (146)
63 cd07484 Peptidases_S8_Thermita 56.0 19 0.00041 28.3 4.0 40 43-82 120-163 (260)
64 KOG2331 Predicted glycosylhydr 55.9 13 0.00028 34.0 3.3 58 65-132 117-180 (526)
65 cd07477 Peptidases_S8_Subtilis 55.6 21 0.00045 27.2 4.1 40 42-81 90-133 (229)
66 cd07479 Peptidases_S8_SKI-1_li 55.5 21 0.00046 28.6 4.3 40 43-82 94-138 (255)
67 PF07172 GRP: Glycine rich pro 54.9 8.3 0.00018 27.6 1.6 12 1-12 1-12 (95)
68 PRK06739 pyruvate kinase; Vali 54.2 39 0.00084 29.4 5.9 42 62-103 254-297 (352)
69 cd02072 Glm_B12_BD B12 binding 54.1 25 0.00054 26.4 4.2 57 27-83 29-90 (128)
70 PTZ00363 rab-GDP dissociation 54.0 44 0.00095 29.6 6.3 39 47-88 3-48 (443)
71 cd02065 B12-binding_like B12 b 53.8 28 0.0006 23.9 4.2 59 27-85 29-91 (125)
72 PRK10949 protease 4; Provision 53.6 16 0.00034 34.0 3.6 55 39-93 355-419 (618)
73 PF02569 Pantoate_ligase: Pant 52.9 17 0.00036 30.9 3.4 30 49-78 48-92 (280)
74 PF02449 Glyco_hydro_42: Beta- 52.2 84 0.0018 26.5 7.5 77 46-131 21-140 (374)
75 cd02810 DHOD_DHPD_FMN Dihydroo 51.8 54 0.0012 26.4 6.1 48 61-129 85-134 (289)
76 PF02310 B12-binding: B12 bind 51.3 22 0.00047 24.5 3.3 56 29-84 32-91 (121)
77 cd07492 Peptidases_S8_8 Peptid 51.2 31 0.00067 26.5 4.4 41 43-83 86-132 (222)
78 cd06600 GH31_MGAM-like This fa 50.7 92 0.002 26.0 7.5 62 59-130 64-161 (317)
79 cd07476 Peptidases_S8_thiazoli 50.3 21 0.00046 29.0 3.6 40 43-82 101-148 (267)
80 PF03644 Glyco_hydro_85: Glyco 50.0 6.7 0.00015 33.2 0.6 59 64-132 47-112 (311)
81 PF01055 Glyco_hydro_31: Glyco 50.0 72 0.0016 27.4 6.9 63 59-131 83-182 (441)
82 KOG0183 20S proteasome, regula 49.3 33 0.00072 28.7 4.5 73 38-126 58-140 (249)
83 PRK15447 putative protease; Pr 49.0 20 0.00043 29.9 3.2 52 27-79 8-68 (301)
84 PF14871 GHL6: Hypothetical gl 48.9 17 0.00037 27.1 2.6 19 61-79 46-64 (132)
85 TIGR00736 nifR3_rel_arch TIM-b 48.6 51 0.0011 26.9 5.5 46 61-129 57-102 (231)
86 PF01408 GFO_IDH_MocA: Oxidore 48.2 32 0.00068 23.5 3.7 57 38-100 52-108 (120)
87 cd06416 GH25_Lys1-like Lys-1 i 48.2 22 0.00047 27.3 3.1 28 48-75 22-55 (196)
88 cd06599 GH31_glycosidase_Aec37 47.9 87 0.0019 26.1 6.9 61 59-129 73-168 (317)
89 cd06594 GH31_glucosidase_YihQ 47.7 76 0.0016 26.6 6.5 33 86-128 133-165 (317)
90 cd00288 Pyruvate_Kinase Pyruva 47.4 37 0.0008 30.7 4.9 43 61-103 261-305 (480)
91 PTZ00262 subtilisin-like prote 47.4 21 0.00046 33.6 3.4 41 42-82 429-473 (639)
92 PRK07259 dihydroorotate dehydr 47.3 59 0.0013 26.6 5.8 46 61-127 79-126 (301)
93 cd06419 GH25_muramidase_2 Unch 47.3 31 0.00067 27.0 3.9 51 47-105 28-85 (190)
94 cd04740 DHOD_1B_like Dihydroor 47.1 69 0.0015 26.0 6.1 48 61-129 77-125 (296)
95 PF14488 DUF4434: Domain of un 46.9 96 0.0021 23.8 6.5 46 61-106 67-116 (166)
96 PF00128 Alpha-amylase: Alpha 46.9 34 0.00073 26.5 4.0 32 48-79 35-72 (316)
97 cd06592 GH31_glucosidase_KIAA1 46.3 77 0.0017 26.3 6.3 61 59-129 70-165 (303)
98 PLN02461 Probable pyruvate kin 46.3 60 0.0013 29.8 6.1 41 63-103 283-325 (511)
99 PRK15457 ethanolamine utilizat 45.9 25 0.00054 29.3 3.3 18 62-79 7-24 (233)
100 COG0279 GmhA Phosphoheptose is 45.9 44 0.00096 26.8 4.6 38 61-105 30-67 (176)
101 cd06267 PBP1_LacI_sugar_bindin 44.5 99 0.0022 22.8 6.2 80 24-104 29-114 (264)
102 PLN02762 pyruvate kinase compl 44.4 36 0.00078 31.2 4.4 42 62-103 293-336 (509)
103 cd04743 NPD_PKS 2-Nitropropane 43.8 53 0.0011 28.3 5.1 38 39-79 73-110 (320)
104 PF13380 CoA_binding_2: CoA bi 43.6 66 0.0014 23.0 4.9 53 38-100 47-100 (116)
105 cd05014 SIS_Kpsf KpsF-like pro 42.7 36 0.00078 23.6 3.4 31 51-81 51-83 (128)
106 PLN02765 pyruvate kinase 42.6 47 0.001 30.6 4.8 39 62-103 296-338 (526)
107 PF03102 NeuB: NeuB family; I 42.5 17 0.00037 29.8 1.9 76 39-121 60-162 (241)
108 PF02670 DXP_reductoisom: 1-de 42.2 49 0.0011 24.8 4.2 51 23-78 69-120 (129)
109 cd07483 Peptidases_S8_Subtilis 42.2 28 0.00061 28.4 3.1 40 43-82 136-181 (291)
110 TIGR02102 pullulan_Gpos pullul 41.6 70 0.0015 32.1 6.1 19 61-79 557-575 (1111)
111 PLN02379 pfkB-type carbohydrat 41.4 64 0.0014 27.4 5.2 52 47-98 176-247 (367)
112 COG3638 ABC-type phosphate/pho 41.4 40 0.00086 28.5 3.9 41 54-103 175-220 (258)
113 cd07766 DHQ_Fe-ADH Dehydroquin 40.6 42 0.00091 27.6 3.9 57 26-83 25-89 (332)
114 cd07490 Peptidases_S8_6 Peptid 40.5 50 0.0011 25.7 4.1 39 43-81 93-137 (254)
115 cd06589 GH31 The enzymes of gl 39.5 90 0.002 25.2 5.6 52 59-130 66-117 (265)
116 PF12682 Flavodoxin_4: Flavodo 38.5 18 0.00038 27.4 1.3 31 47-77 72-108 (156)
117 PRK13477 bifunctional pantoate 38.1 40 0.00086 30.8 3.6 30 49-78 46-90 (512)
118 cd01822 Lysophospholipase_L1_l 38.0 47 0.001 23.8 3.5 40 39-78 55-107 (177)
119 cd07489 Peptidases_S8_5 Peptid 37.7 55 0.0012 26.6 4.2 41 42-82 118-164 (312)
120 COG0414 PanC Panthothenate syn 37.6 38 0.00082 29.0 3.2 30 49-78 48-92 (285)
121 cd07493 Peptidases_S8_9 Peptid 37.1 50 0.0011 26.1 3.7 41 43-83 99-158 (261)
122 smart00642 Aamy Alpha-amylase 37.0 51 0.0011 25.1 3.6 19 61-79 72-90 (166)
123 cd07487 Peptidases_S8_1 Peptid 36.9 57 0.0012 25.3 4.0 35 48-82 106-148 (264)
124 cd07474 Peptidases_S8_subtilis 36.7 54 0.0012 26.1 3.9 41 42-82 113-159 (295)
125 cd06533 Glyco_transf_WecG_TagA 36.7 72 0.0016 24.2 4.4 38 45-82 96-134 (171)
126 cd07494 Peptidases_S8_10 Pepti 36.4 60 0.0013 26.8 4.2 39 43-81 99-154 (298)
127 COG1603 RPP1 RNase P/RNase MRP 36.2 50 0.0011 27.4 3.6 50 34-83 84-137 (229)
128 COG0528 PyrH Uridylate kinase 36.1 82 0.0018 26.3 4.9 42 59-102 112-153 (238)
129 PF03060 NMO: Nitronate monoox 35.7 1.1E+02 0.0023 25.8 5.7 41 48-98 113-153 (330)
130 TIGR01668 YqeG_hyp_ppase HAD s 35.1 1.2E+02 0.0027 22.6 5.4 52 61-114 118-169 (170)
131 cd04077 Peptidases_S8_PCSK9_Pr 34.3 59 0.0013 25.5 3.7 35 48-82 119-156 (255)
132 COG4925 Uncharacterized conser 34.1 23 0.00051 27.8 1.3 33 69-101 45-80 (166)
133 PRK15116 sulfur acceptor prote 33.8 58 0.0012 27.2 3.7 57 47-104 120-188 (268)
134 cd08179 NADPH_BDH NADPH-depend 33.6 63 0.0014 27.4 4.0 45 39-83 43-92 (375)
135 TIGR02100 glgX_debranch glycog 33.6 1.4E+02 0.0029 28.2 6.5 19 61-79 247-265 (688)
136 TIGR01423 trypano_reduc trypan 33.5 48 0.001 29.4 3.4 31 47-77 2-32 (486)
137 cd00755 YgdL_like Family of ac 33.4 63 0.0014 26.1 3.8 60 47-106 101-171 (231)
138 KOG0203 Na+/K+ ATPase, alpha s 33.3 35 0.00076 33.7 2.6 39 44-82 569-616 (1019)
139 cd08180 PDD 1,3-propanediol de 33.2 65 0.0014 26.9 3.9 44 39-83 41-89 (332)
140 KOG3042 Panthothenate syntheta 33.0 43 0.00094 28.3 2.8 32 46-78 49-94 (283)
141 TIGR00696 wecB_tagA_cpsF bacte 33.0 83 0.0018 24.5 4.3 58 25-82 75-135 (177)
142 PRK06354 pyruvate kinase; Prov 32.8 79 0.0017 29.4 4.7 43 61-103 266-310 (590)
143 cd06545 GH18_3CO4_chitinase Th 32.6 1.2E+02 0.0026 24.1 5.2 46 61-106 183-232 (253)
144 cd06597 GH31_transferase_CtsY 32.5 1.5E+02 0.0033 25.1 6.1 20 59-78 85-104 (340)
145 PRK11579 putative oxidoreducta 32.2 81 0.0018 26.1 4.4 20 38-57 54-73 (346)
146 PRK05286 dihydroorotate dehydr 32.1 1.5E+02 0.0032 25.2 6.0 52 61-128 127-178 (344)
147 PF13899 Thioredoxin_7: Thiore 31.9 53 0.0011 21.4 2.6 24 61-84 6-29 (82)
148 PRK10426 alpha-glucosidase; Pr 31.6 1.7E+02 0.0036 27.3 6.6 59 59-127 269-361 (635)
149 cd08178 AAD_C C-terminal alcoh 31.5 69 0.0015 27.5 3.9 45 39-83 40-89 (398)
150 TIGR00288 conserved hypothetic 31.3 96 0.0021 24.2 4.3 36 44-80 101-136 (160)
151 cd08551 Fe-ADH iron-containing 30.9 68 0.0015 27.0 3.7 45 39-83 42-91 (370)
152 PRK15452 putative protease; Pr 30.8 1.5E+02 0.0032 26.5 6.0 40 60-105 47-86 (443)
153 TIGR03151 enACPred_II putative 30.2 1.3E+02 0.0027 25.3 5.2 35 40-76 79-113 (307)
154 cd04501 SGNH_hydrolase_like_4 29.9 94 0.002 22.6 4.0 40 40-79 51-103 (183)
155 cd07475 Peptidases_S8_C5a_Pept 29.9 67 0.0015 26.3 3.5 38 44-81 140-185 (346)
156 cd08189 Fe-ADH5 Iron-containin 29.8 80 0.0017 26.8 4.0 45 39-83 45-94 (374)
157 cd08183 Fe-ADH2 Iron-containin 29.5 74 0.0016 27.0 3.7 44 40-83 39-86 (374)
158 cd08187 BDH Butanol dehydrogen 29.4 66 0.0014 27.4 3.4 45 39-83 48-97 (382)
159 TIGR01501 MthylAspMutase methy 29.3 70 0.0015 24.1 3.2 56 27-82 31-91 (134)
160 cd07485 Peptidases_S8_Fervidol 29.1 80 0.0017 25.2 3.7 40 42-81 118-171 (273)
161 cd06595 GH31_xylosidase_XylS-l 28.6 2.7E+02 0.0059 22.8 6.9 21 59-79 74-94 (292)
162 TIGR00705 SppA_67K signal pept 28.5 56 0.0012 30.0 3.0 54 40-93 338-401 (584)
163 PRK05472 redox-sensing transcr 28.3 85 0.0018 24.5 3.6 44 39-82 137-180 (213)
164 cd07498 Peptidases_S8_15 Pepti 28.2 88 0.0019 24.1 3.7 39 43-81 92-139 (242)
165 COG1432 Uncharacterized conser 28.2 1.1E+02 0.0024 23.7 4.2 37 46-82 108-144 (181)
166 PRK05447 1-deoxy-D-xylulose 5- 27.9 1.3E+02 0.0027 26.7 5.0 48 26-78 73-121 (385)
167 PF03808 Glyco_tran_WecB: Glyc 27.8 1.2E+02 0.0025 23.1 4.2 58 25-82 75-136 (172)
168 PRK12359 flavodoxin FldB; Prov 27.2 1.5E+02 0.0033 22.9 4.9 55 48-103 45-110 (172)
169 PF00224 PK: Pyruvate kinase, 27.1 97 0.0021 26.5 4.1 41 63-103 265-307 (348)
170 PF03190 Thioredox_DsbH: Prote 27.1 52 0.0011 25.7 2.2 35 62-96 27-68 (163)
171 cd08171 GlyDH-like2 Glycerol d 27.1 87 0.0019 26.3 3.7 45 39-83 40-89 (345)
172 cd07496 Peptidases_S8_13 Pepti 26.8 1.2E+02 0.0026 24.3 4.4 38 46-83 135-177 (285)
173 PF00465 Fe-ADH: Iron-containi 26.7 83 0.0018 26.4 3.5 45 39-83 40-89 (366)
174 TIGR03128 RuMP_HxlA 3-hexulose 26.6 1.2E+02 0.0026 23.1 4.2 37 43-79 71-109 (206)
175 cd05562 Peptidases_S53_like Pe 26.5 96 0.0021 25.4 3.8 40 42-81 84-132 (275)
176 cd08194 Fe-ADH6 Iron-containin 26.5 92 0.002 26.4 3.8 45 39-83 42-91 (375)
177 cd04848 Peptidases_S8_Autotran 26.3 1E+02 0.0023 23.5 3.8 42 40-81 95-155 (267)
178 cd04739 DHOD_like Dihydroorota 26.3 1.9E+02 0.0041 24.3 5.6 55 54-129 77-135 (325)
179 TIGR02638 lactal_redase lactal 26.2 89 0.0019 26.6 3.7 45 39-83 48-97 (379)
180 PF08544 GHMP_kinases_C: GHMP 25.9 1.8E+02 0.0038 18.5 4.3 48 58-105 33-83 (85)
181 PF03971 IDH: Monomeric isocit 25.8 76 0.0017 30.3 3.4 36 40-75 65-103 (735)
182 cd08192 Fe-ADH7 Iron-containin 25.8 1E+02 0.0022 26.1 3.9 45 39-83 43-92 (370)
183 cd07481 Peptidases_S8_Bacillop 25.7 1.2E+02 0.0027 23.9 4.2 36 47-82 118-158 (264)
184 PRK07565 dihydroorotate dehydr 25.5 1.7E+02 0.0037 24.5 5.2 53 55-128 80-136 (334)
185 cd07482 Peptidases_S8_Lantibio 25.5 1.2E+02 0.0026 24.0 4.1 39 44-82 102-155 (294)
186 cd08185 Fe-ADH1 Iron-containin 25.5 97 0.0021 26.3 3.8 45 39-83 45-94 (380)
187 cd04852 Peptidases_S8_3 Peptid 25.3 1.1E+02 0.0024 24.9 3.9 39 44-82 169-214 (307)
188 cd08193 HVD 5-hydroxyvalerate 25.0 99 0.0022 26.2 3.7 45 39-83 45-94 (376)
189 cd07093 ALDH_F8_HMSADH Human a 24.9 1E+02 0.0022 26.6 3.8 63 45-109 193-258 (455)
190 smart00864 Tubulin Tubulin/Fts 24.7 26 0.00057 27.0 0.2 23 61-85 76-98 (192)
191 PRK10785 maltodextrin glucosid 24.5 77 0.0017 29.0 3.1 19 61-79 228-246 (598)
192 smart00857 Resolvase Resolvase 24.4 1.1E+02 0.0024 21.6 3.4 40 39-78 56-101 (148)
193 PRK06247 pyruvate kinase; Prov 24.2 2.3E+02 0.005 25.8 6.1 43 61-103 257-301 (476)
194 cd07473 Peptidases_S8_Subtilis 24.2 1.3E+02 0.0028 23.4 4.0 39 44-82 116-158 (259)
195 TIGR01370 cysRS possible cyste 24.1 1.2E+02 0.0026 26.1 4.0 35 46-83 62-107 (315)
196 cd02068 radical_SAM_B12_BD B12 23.8 1.3E+02 0.0027 21.2 3.6 60 25-84 16-78 (127)
197 cd06312 PBP1_ABC_sugar_binding 23.5 3.4E+02 0.0073 20.7 6.6 59 45-104 54-122 (271)
198 cd04795 SIS SIS domain. SIS (S 23.5 1.3E+02 0.0029 18.9 3.4 26 51-76 51-78 (87)
199 cd07018 S49_SppA_67K_type Sign 23.5 1.4E+02 0.0031 23.4 4.2 55 39-93 37-100 (222)
200 KOG3858 Ephrin, ligand for Eph 23.0 86 0.0019 26.1 2.9 17 16-32 15-32 (233)
201 PF13091 PLDc_2: PLD-like doma 22.8 2.5E+02 0.0054 18.9 5.7 54 49-102 12-65 (126)
202 cd08173 Gro1PDH Sn-glycerol-1- 22.8 1.3E+02 0.0029 25.1 4.0 44 39-83 43-89 (339)
203 TIGR03127 RuMP_HxlB 6-phospho 22.7 1.2E+02 0.0025 22.6 3.4 27 52-78 77-105 (179)
204 COG0696 GpmI Phosphoglyceromut 22.6 1.4E+02 0.003 27.7 4.3 34 45-78 385-439 (509)
205 PRK10528 multifunctional acyl- 22.3 1.5E+02 0.0032 22.4 3.9 40 38-77 61-113 (191)
206 PRK10206 putative oxidoreducta 22.2 1.6E+02 0.0034 24.8 4.3 40 39-78 55-121 (344)
207 PRK09860 putative alcohol dehy 22.1 1.3E+02 0.0027 25.9 3.8 45 39-83 50-99 (383)
208 cd08181 PPD-like 1,3-propanedi 22.1 1E+02 0.0022 26.1 3.2 45 39-83 45-94 (357)
209 COG2342 Predicted extracellula 22.1 1.2E+02 0.0026 26.2 3.6 43 39-82 35-85 (300)
210 TIGR02403 trehalose_treC alpha 21.9 1E+02 0.0023 27.8 3.4 19 61-79 77-95 (543)
211 cd07099 ALDH_DDALDH Methylomon 21.7 1.5E+02 0.0032 25.6 4.2 79 25-109 177-258 (453)
212 PF02598 Methyltrn_RNA_3: Puta 21.7 71 0.0015 26.9 2.2 58 27-84 176-240 (291)
213 cd07114 ALDH_DhaS Uncharacteri 21.6 1.4E+02 0.003 25.9 4.0 64 44-109 194-260 (457)
214 TIGR02402 trehalose_TreZ malto 21.5 94 0.002 28.2 3.1 19 61-79 162-180 (542)
215 PF13727 CoA_binding_3: CoA-bi 21.5 52 0.0011 23.5 1.2 39 39-77 132-173 (175)
216 cd05006 SIS_GmhA Phosphoheptos 21.4 1.3E+02 0.0028 22.5 3.4 32 50-81 103-137 (177)
217 cd02958 UAS UAS family; UAS is 21.4 1.4E+02 0.0031 20.4 3.4 25 60-84 5-29 (114)
218 cd08190 HOT Hydroxyacid-oxoaci 21.4 1.4E+02 0.003 26.0 4.0 44 40-83 43-91 (414)
219 cd01537 PBP1_Repressors_Sugar_ 21.4 3.3E+02 0.0072 19.9 6.3 79 25-104 30-116 (264)
220 COG0731 Fe-S oxidoreductases [ 21.1 1.4E+02 0.0031 25.5 3.9 32 47-78 78-115 (296)
221 cd02955 SSP411 TRX domain, SSP 21.0 1.1E+02 0.0023 22.4 2.8 22 63-84 6-27 (124)
222 PRK10530 pyridoxal phosphate ( 20.9 90 0.0019 24.3 2.5 22 58-79 22-43 (272)
223 cd07081 ALDH_F20_ACDH_EutE-lik 20.8 1.3E+02 0.0029 26.5 3.8 60 43-106 173-232 (439)
224 cd03415 CbiX_CbiC Archaeal sir 20.8 1.4E+02 0.0031 22.0 3.4 30 47-77 30-62 (125)
225 PRK09423 gldA glycerol dehydro 20.8 1.5E+02 0.0032 25.1 3.9 45 39-83 47-95 (366)
226 PF13685 Fe-ADH_2: Iron-contai 20.8 57 0.0012 26.9 1.4 58 26-83 21-86 (250)
227 PRK02412 aroD 3-dehydroquinate 20.6 2.1E+02 0.0044 23.2 4.6 40 40-79 101-142 (253)
228 cd04738 DHOD_2_like Dihydrooro 20.5 3.4E+02 0.0073 22.7 6.0 23 61-83 117-139 (327)
229 cd08184 Fe-ADH3 Iron-containin 20.4 2.2E+02 0.0048 24.3 5.0 56 27-83 29-92 (347)
230 PRK06242 flavodoxin; Provision 20.2 1.3E+02 0.0029 21.4 3.1 37 47-83 42-86 (150)
231 cd07041 STAS_RsbR_RsbS_like Su 20.1 2.5E+02 0.0054 18.9 4.4 40 39-78 31-79 (109)
232 COG1954 GlpP Glycerol-3-phosph 20.1 1.8E+02 0.004 23.4 4.1 55 44-101 19-74 (181)
233 PRK10624 L-1,2-propanediol oxi 20.1 1.4E+02 0.003 25.5 3.7 45 39-83 49-98 (382)
234 COG1433 Uncharacterized conser 20.0 1.4E+02 0.0029 22.3 3.2 39 39-80 56-94 (121)
No 1
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2.5e-42 Score=298.40 Aligned_cols=116 Identities=41% Similarity=0.667 Sum_probs=109.8
Q ss_pred hhcCCCCCceEEEccCC--CCCCchhhhhcCCCccEEEeeeC---------------------------CCchhHhHHHH
Q 048651 18 LMTGDDASGITIYWVQN--GIQSTFMETCTTSNYDFVNLAFC---------------------------PPLEIIDIKSC 68 (134)
Q Consensus 18 ~~~~~~~~~i~~YWGq~--~~~~~L~~~C~~~~ydiV~laF~---------------------------~P~~~~dI~~C 68 (134)
.++..++++|++||||| ++|++|+.||+++.||+|+++|+ |.+|++||+.|
T Consensus 20 k~~~~~~t~IA~YWGQN~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd~~~~~l~~CTqi~~di~~C 99 (568)
T KOG4701|consen 20 KLNLTNQTAIAGYWGQNLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCSDSDTFSLKKCTQIETDIQVC 99 (568)
T ss_pred ccccccccceEEEeccccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccCccccccccccchhhhHHHHH
Confidence 44678889999999999 88999999999999999999999 23499999999
Q ss_pred HHCCCeEEEeeecCCcccccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCCCC
Q 048651 69 QAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGTIA 133 (134)
Q Consensus 69 Q~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~~~ 133 (134)
|++||||||||||+.|+|.+.++++|+.||++|||+||+|....||||++||||||||||.+++.
T Consensus 100 QS~GiKVlLSLGG~~GnYs~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~g~~~ 164 (568)
T KOG4701|consen 100 QSNGIKVLLSLGGYNGNYSLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEKGTNT 164 (568)
T ss_pred HhcCeEEEEeccCcccceeeccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeeecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999874
No 2
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=100.00 E-value=6.5e-39 Score=264.46 Aligned_cols=108 Identities=51% Similarity=0.887 Sum_probs=101.7
Q ss_pred CceEEEccCCCCCCchhhhhcCCCccEEEeeeC------------------------CCchhHhHHHHHHCCCeEEEeee
Q 048651 25 SGITIYWVQNGIQSTFMETCTTSNYDFVNLAFC------------------------PPLEIIDIKSCQAKGVKVMLSIE 80 (134)
Q Consensus 25 ~~i~~YWGq~~~~~~L~~~C~~~~ydiV~laF~------------------------~P~~~~dI~~CQ~~GkkVlLSlG 80 (134)
++|+||||||.+|++|+++|+++.||||+|||+ ||+|++|||+||++|||||||||
T Consensus 1 ~~v~vyWGq~~~~~~L~~~C~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLSIG 80 (280)
T cd02877 1 GNIAVYWGQNSDEGSLREYCDTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLSIG 80 (280)
T ss_pred CCeEEECCCCCCCCCHHHHhCCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEEcc
Confidence 589999999999999999999999999999998 24699999999999999999999
Q ss_pred cCCcccccCCHHHHHHHHHHHHHhhCCCCC--CCcCCCCcccceeeeecCCCCC
Q 048651 81 GGAGNYYLSFSEDARQVADYLWNNFLGGQS--SSRPLGNAVLDGIDFGIEGGTI 132 (134)
Q Consensus 81 G~~g~~~l~s~~~A~~fA~~Lw~~f~~g~s--~~RPfg~~~lDG~D~DiE~g~~ 132 (134)
|++++++++|+++|++||++||++|+++++ .+||||+++|||||||||++..
T Consensus 81 G~~~~~~~~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~ 134 (280)
T cd02877 81 GAGGSYSLSSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSP 134 (280)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCc
Confidence 999999999999999999999999998864 6899999999999999999764
No 3
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.77 E-value=1.4e-18 Score=143.83 Aligned_cols=95 Identities=29% Similarity=0.454 Sum_probs=78.8
Q ss_pred ceEEEccCCCCC----C-chhhhhcCCCccEEEeeeCC----------------C------chhHhHHHHHHCCCeEEEe
Q 048651 26 GITIYWVQNGIQ----S-TFMETCTTSNYDFVNLAFCP----------------P------LEIIDIKSCQAKGVKVMLS 78 (134)
Q Consensus 26 ~i~~YWGq~~~~----~-~L~~~C~~~~ydiV~laF~~----------------P------~~~~dI~~CQ~~GkkVlLS 78 (134)
.|++||+..... . +++.. +..||||++||+. + .+.++|++||++|+|||||
T Consensus 2 ~~vgY~~~w~~~~~~~~~~~~~~--~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~G~KVllS 79 (312)
T cd02871 2 VLVGYWHNWDNGAGSGRQDLDDV--PSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAKGKKVLIS 79 (312)
T ss_pred eEEEecCcccCCCCCCCCCcccC--CCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHCCCEEEEE
Confidence 578999864321 1 35453 5789999999991 1 1678999999999999999
Q ss_pred eecCCcccccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCCC
Q 048651 79 IEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGTI 132 (134)
Q Consensus 79 lGG~~g~~~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~~ 132 (134)
|||+.+++.+++.+.+++||++||+.+ .++.+||||||+|++..
T Consensus 80 iGG~~~~~~~~~~~~~~~fa~sl~~~~----------~~~g~DGiDiD~E~~~~ 123 (312)
T cd02871 80 IGGANGHVDLNHTAQEDNFVDSIVAII----------KEYGFDGLDIDLESGSN 123 (312)
T ss_pred EeCCCCccccCCHHHHHHHHHHHHHHH----------HHhCCCeEEEecccCCc
Confidence 999999888999999999999999976 66779999999999753
No 4
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=99.59 E-value=5.6e-15 Score=120.19 Aligned_cols=95 Identities=24% Similarity=0.289 Sum_probs=69.8
Q ss_pred eEEEccCCCC--C---Cchhh-hhcCCCccEEEeeeCC-------------C------chhHhHHHHHHCCCeEEEeeec
Q 048651 27 ITIYWVQNGI--Q---STFME-TCTTSNYDFVNLAFCP-------------P------LEIIDIKSCQAKGVKVMLSIEG 81 (134)
Q Consensus 27 i~~YWGq~~~--~---~~L~~-~C~~~~ydiV~laF~~-------------P------~~~~dI~~CQ~~GkkVlLSlGG 81 (134)
+++||+.... . ..|-. .-+..++.+|+++|+. | .+.+||++||++|+||||||||
T Consensus 2 ~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G~l~~~d~~~~~~~~~~~~~~i~~~~~~g~KVllSiGG 81 (256)
T cd06546 2 LVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDGNIHLNDHPPDHPRFTTLWTELAILQSSGVKVMGMLGG 81 (256)
T ss_pred EEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCCeEEECCCCCCcchhhHHHHHHHHHHhCCCEEEEEECC
Confidence 6889875421 1 11111 1124589999999992 1 2678999999999999999999
Q ss_pred CC-ccccc--CCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCC
Q 048651 82 GA-GNYYL--SFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGT 131 (134)
Q Consensus 82 ~~-g~~~l--~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~ 131 (134)
+. +.|+. .+++..++|++.+-+.. .++.|||||||+|++.
T Consensus 82 ~~~~~fs~~a~~~~~r~~f~~s~~~~~----------~~~~~DGiDiDwE~p~ 124 (256)
T cd06546 82 AAPGSFSRLDDDDEDFERYYGQLRDMI----------RRRGLDGLDLDVEEPM 124 (256)
T ss_pred CCCCCcccccCCHHHHHHHHHHHHHHH----------HHhCCCceEEeeecCC
Confidence 85 55665 56778888888888755 4566999999999874
No 5
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.57 E-value=5.6e-15 Score=123.00 Aligned_cols=86 Identities=26% Similarity=0.336 Sum_probs=72.5
Q ss_pred CCchhhhhcCCCccEEEeeeCC------C------------chhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHH
Q 048651 37 QSTFMETCTTSNYDFVNLAFCP------P------------LEIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVA 98 (134)
Q Consensus 37 ~~~L~~~C~~~~ydiV~laF~~------P------------~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA 98 (134)
..+|.++|.+.++++|++||+. | .+.++|+.||++|+||+||+||+.+.+...+..++++|+
T Consensus 14 ~~~l~~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~ 93 (294)
T cd06543 14 PPDLTTYAAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLA 93 (294)
T ss_pred CcCHHHHHHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHH
Confidence 4568899999999999999991 1 267889999999999999999999987666778889999
Q ss_pred HHHHHhhCCCCCCCcCCCCcccceeeeecCCCCC
Q 048651 99 DYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGTI 132 (134)
Q Consensus 99 ~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~~ 132 (134)
+.+-+.. ..+.+||+|||||++..
T Consensus 94 ~a~~~~i----------~~y~~dgiDfDiE~~~~ 117 (294)
T cd06543 94 AAYQKVI----------DAYGLTHLDFDIEGGAL 117 (294)
T ss_pred HHHHHHH----------HHhCCCeEEEeccCCcc
Confidence 8886644 66679999999999753
No 6
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.56 E-value=1.4e-14 Score=115.50 Aligned_cols=93 Identities=25% Similarity=0.211 Sum_probs=74.6
Q ss_pred eEEEccCCCCC-----CchhhhhcCCCccEEEeeeCC-------------CchhHhHHHHHHCCCeEEEeeecCCccc--
Q 048651 27 ITIYWVQNGIQ-----STFMETCTTSNYDFVNLAFCP-------------PLEIIDIKSCQAKGVKVMLSIEGGAGNY-- 86 (134)
Q Consensus 27 i~~YWGq~~~~-----~~L~~~C~~~~ydiV~laF~~-------------P~~~~dI~~CQ~~GkkVlLSlGG~~g~~-- 86 (134)
..+||+.+.+. .+|+.. .+.+|+|+|-+.+ ....++|+.+|+||+|||+||||....-
T Consensus 3 ~~~y~~~~~~~~~~~~~~l~~~--pds~D~v~lf~~~~~~~~~~~~~~~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~ 80 (255)
T cd06542 3 SFGYFEVWDDKGASLQESLLNL--PDSVDMVSLFAANINLDAATAVQFLLTNKETYIRPLQAKGTKVLLSILGNHLGAGF 80 (255)
T ss_pred EEEEEEecCCcCcccccccccC--CCcceEEEEcccccCcccccchhhhhHHHHHHHHHHhhCCCEEEEEECCCCCCCCc
Confidence 46799877542 567775 5799999993333 2367899999999999999999987543
Q ss_pred -ccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCC
Q 048651 87 -YLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGT 131 (134)
Q Consensus 87 -~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~ 131 (134)
...+++.+++||+.+++.+ .++.+||||||+|++.
T Consensus 81 ~~~~~~~~~~~fa~~l~~~v----------~~yglDGiDiD~E~~~ 116 (255)
T cd06542 81 ANNLSDAAAKAYAKAIVDTV----------DKYGLDGVDFDDEYSG 116 (255)
T ss_pred cccCCHHHHHHHHHHHHHHH----------HHhCCCceEEeeeecc
Confidence 3478889999999999987 6677999999999864
No 7
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=1.9e-14 Score=120.20 Aligned_cols=97 Identities=23% Similarity=0.380 Sum_probs=80.8
Q ss_pred CCceEEEccCCCC-------CCc-----hhhhhcCCCccEEEeeeC---------CC------chhHhHHHHHHCCCeEE
Q 048651 24 ASGITIYWVQNGI-------QST-----FMETCTTSNYDFVNLAFC---------PP------LEIIDIKSCQAKGVKVM 76 (134)
Q Consensus 24 ~~~i~~YWGq~~~-------~~~-----L~~~C~~~~ydiV~laF~---------~P------~~~~dI~~CQ~~GkkVl 76 (134)
+..+++|||+..+ +++ |++. ..+|++|.++|. +| +|++||+..|++||-||
T Consensus 25 ~KvLvGyWHnw~sgaaDgyq~gs~adial~d~--~~~ynvv~V~Fmk~~g~iptf~P~~~~daeFr~~v~aLnaeGkavl 102 (332)
T COG3469 25 NKVLVGYWHNWKSGAADGYQQGSSADIALADT--PRNYNVVTVSFMKGAGDIPTFKPYNDPDAEFRAQVGALNAEGKAVL 102 (332)
T ss_pred cceEEEeeecccccccccccccceeeeEeccC--CcccceEEEEEeecCCCCcccCcCCCCHHHHHHHHHHhhccCcEEE
Confidence 3478999997532 233 5554 568999999999 33 39999999999999999
Q ss_pred EeeecCCcccccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCCCC
Q 048651 77 LSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGTIA 133 (134)
Q Consensus 77 LSlGG~~g~~~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~~~ 133 (134)
|||||+.|...|...+ ..+||+.|..+. ..+.+||.|+|+|.+...
T Consensus 103 lsLGGAdghIeL~~~q-E~~fv~eiirli----------etyGFDGLDiDLEq~ai~ 148 (332)
T COG3469 103 LSLGGADGHIELKAGQ-EQAFVNEIIRLI----------ETYGFDGLDIDLEQSAIL 148 (332)
T ss_pred EEccCccceEEeccch-HHHHHHHHHHHH----------HHhCCCccccchhhhhhh
Confidence 9999999999999988 678999998877 777799999999987643
No 8
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=99.41 E-value=6.4e-13 Score=106.48 Aligned_cols=95 Identities=24% Similarity=0.305 Sum_probs=77.5
Q ss_pred eEEEccCCCCCCchhhhhcCCCccEEEeeeCC--C-----------chhHhHHHHHHCCCeEEEeeecCCcc---cccCC
Q 048651 27 ITIYWVQNGIQSTFMETCTTSNYDFVNLAFCP--P-----------LEIIDIKSCQAKGVKVMLSIEGGAGN---YYLSF 90 (134)
Q Consensus 27 i~~YWGq~~~~~~L~~~C~~~~ydiV~laF~~--P-----------~~~~dI~~CQ~~GkkVlLSlGG~~g~---~~l~s 90 (134)
|++||-.......+.+.|+...+++|+++|+. + .+...|+.||++|+||++||||+..+ --+.+
T Consensus 1 vigyy~~w~~~~~~~~~~~~~~lThv~~~f~~i~~~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~ 80 (253)
T cd06545 1 VVGYLPNYDDLNALSPTIDFSKLTHINLAFANPDANGTLNANPVRSELNSVVNAAHAHNVKILISLAGGSPPEFTAALND 80 (253)
T ss_pred CEEEeCCcccccCCcccCChhhCCeEEEEEEEECCCCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcCCCCCcchhhhcC
Confidence 57899765555557888999999999999992 1 25677899999999999999998643 24567
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCC
Q 048651 91 SEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGT 131 (134)
Q Consensus 91 ~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~ 131 (134)
++.+++|++++++.+ .++.+||+|||+|.+.
T Consensus 81 ~~~r~~fi~~lv~~~----------~~~~~DGIdiDwE~~~ 111 (253)
T cd06545 81 PAKRKALVDKIINYV----------VSYNLDGIDVDLEGPD 111 (253)
T ss_pred HHHHHHHHHHHHHHH----------HHhCCCceeEEeeccC
Confidence 888999999999977 5566999999999865
No 9
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=99.39 E-value=2.2e-12 Score=98.38 Aligned_cols=96 Identities=19% Similarity=0.107 Sum_probs=75.9
Q ss_pred eEEEccCCCCCC-chhhhhcCCCccEEEeeeCCC---------------chhHhHHHHHHC--CCeEEEeeecCCcccc-
Q 048651 27 ITIYWVQNGIQS-TFMETCTTSNYDFVNLAFCPP---------------LEIIDIKSCQAK--GVKVMLSIEGGAGNYY- 87 (134)
Q Consensus 27 i~~YWGq~~~~~-~L~~~C~~~~ydiV~laF~~P---------------~~~~dI~~CQ~~--GkkVlLSlGG~~g~~~- 87 (134)
+++||.+..... .....+....+++|+++|+.+ ...+.|+.++++ |+||++|+||......
T Consensus 1 vv~y~~~w~~~~~~~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~sigg~~~~~~~ 80 (210)
T cd00598 1 VICYYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISIGGWTDSSPF 80 (210)
T ss_pred CEEEEccccccCCCChhhCCcccCCEEEEeeEEECCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEEcCCCCCCCc
Confidence 578998765432 124556778999999999921 145679999998 9999999999886654
Q ss_pred --cCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCCC
Q 048651 88 --LSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGTI 132 (134)
Q Consensus 88 --l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~~ 132 (134)
+.+.+.+++|++++.+.. .++.+||+|||+|.+..
T Consensus 81 ~~~~~~~~~~~f~~~~~~~v----------~~~~~DGidiD~E~~~~ 117 (210)
T cd00598 81 TLASDPASRAAFANSLVSFL----------KTYGFDGVDIDWEYPGA 117 (210)
T ss_pred hhhcCHHHHHHHHHHHHHHH----------HHcCCCceEEeeeCCCC
Confidence 688889999999999876 55669999999998754
No 10
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=99.17 E-value=3.9e-11 Score=97.22 Aligned_cols=95 Identities=21% Similarity=0.230 Sum_probs=68.9
Q ss_pred ceEEEccCCC--CCC--chhhhhcCCCccEEEeeeCC----C-------------------chhHhHHHHHHCCCeEEEe
Q 048651 26 GITIYWVQNG--IQS--TFMETCTTSNYDFVNLAFCP----P-------------------LEIIDIKSCQAKGVKVMLS 78 (134)
Q Consensus 26 ~i~~YWGq~~--~~~--~L~~~C~~~~ydiV~laF~~----P-------------------~~~~dI~~CQ~~GkkVlLS 78 (134)
+|++||.+.. +++ .+.+ +....+++|+++|+. + .....|+ +|..|+|||||
T Consensus 2 ~vv~Y~~~~~~~~~~~~~~~~-i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kvlls 79 (343)
T PF00704_consen 2 RVVGYYSNWNSYRPGSYKIED-IPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNLKELK-AKNPGVKVLLS 79 (343)
T ss_dssp EEEEEEEGGGGSSTGCSHGGG-SHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHHHHHH-HHHTT-EEEEE
T ss_pred EEEEEECCcCCCCCCCCCHHH-CCcccCCEEEEEeeeecCCCceecccccccccCccccchhHHHHHH-hhccCceEEEE
Confidence 5899999753 233 2444 445789999999991 1 0334566 77889999999
Q ss_pred eecCCcc----ccc-CCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCCC
Q 048651 79 IEGGAGN----YYL-SFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGTI 132 (134)
Q Consensus 79 lGG~~g~----~~l-~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~~ 132 (134)
|||...+ ..+ .+++.+++|++.|.+.. .++.+||||||+|++..
T Consensus 80 igg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l----------~~y~~DGidiD~e~~~~ 128 (343)
T PF00704_consen 80 IGGWGMSSDGFSQLLSNPAKRQNFINNIVSFL----------KKYGFDGIDIDWEYPSS 128 (343)
T ss_dssp EEETTSSHHHHHHHHHSHHHHHHHHHHHHHHH----------HHHT-SEEEEEESSTTS
T ss_pred eccccccccccccccccHHHHHHHHHhhhhhh----------cccCcceeeeeeeeccc
Confidence 9999432 333 36788999999999876 66779999999999765
No 11
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=98.84 E-value=1.9e-08 Score=83.08 Aligned_cols=95 Identities=19% Similarity=0.187 Sum_probs=65.9
Q ss_pred ceEEEccCCCCCCchhhhhcCCCccEEEeeeCC--Cc-------------hhHhHHHHH--HCCCeEEEeeecCCcc---
Q 048651 26 GITIYWVQNGIQSTFMETCTTSNYDFVNLAFCP--PL-------------EIIDIKSCQ--AKGVKVMLSIEGGAGN--- 85 (134)
Q Consensus 26 ~i~~YWGq~~~~~~L~~~C~~~~ydiV~laF~~--P~-------------~~~dI~~CQ--~~GkkVlLSlGG~~g~--- 85 (134)
.+++||-+....-.+.+. +...+++|+.+|+. |. +..-++..+ ..+.||||||||++.+
T Consensus 4 ~~~~Y~~~w~~~~~~~~i-~~~~~THi~yaf~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~lkvlisiGG~~~~s~~ 82 (299)
T cd02879 4 VKGGYWPAWSEEFPPSNI-DSSLFTHLFYAFADLDPSTYEVVISPSDESEFSTFTETVKRKNPSVKTLLSIGGGGSDSSA 82 (299)
T ss_pred EEEEEECCCCCCCChhHC-CcccCCEEEEEEEEecCCCCEEeeccccHHHHHHHHHHHHHhCCCCeEEEEEeCCCCCCch
Confidence 457898765422234443 45689999999993 21 112222333 4578999999998742
Q ss_pred c--ccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCC
Q 048651 86 Y--YLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGT 131 (134)
Q Consensus 86 ~--~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~ 131 (134)
+ -+.+++.+++|++++.+.. .++.+||+|||+|.+.
T Consensus 83 fs~~~~~~~~R~~fi~siv~~l----------~~~~fDGidiDWE~P~ 120 (299)
T cd02879 83 FAAMASDPTARKAFINSSIKVA----------RKYGFDGLDLDWEFPS 120 (299)
T ss_pred hhHHhCCHHHHHHHHHHHHHHH----------HHhCCCceeecccCCC
Confidence 1 2567888999999999976 5566999999999864
No 12
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=98.74 E-value=5.3e-08 Score=81.91 Aligned_cols=94 Identities=22% Similarity=0.224 Sum_probs=62.8
Q ss_pred eEEEccCCCC-----CCchhhhhcCCCccEEEeeeCCC--c-------hhHhHH-HHHHCCCeEEEeeecCCccc-----
Q 048651 27 ITIYWVQNGI-----QSTFMETCTTSNYDFVNLAFCPP--L-------EIIDIK-SCQAKGVKVMLSIEGGAGNY----- 86 (134)
Q Consensus 27 i~~YWGq~~~-----~~~L~~~C~~~~ydiV~laF~~P--~-------~~~dI~-~CQ~~GkkVlLSlGG~~g~~----- 86 (134)
+++||-.... .-+..+. +...+++|+.+|+.+ . ..+..+ --+.++.||||||||+..+-
T Consensus 2 ~v~Y~~~w~~~r~~~~~~~~~i-~~~~~THi~yaf~~~~~~g~l~~~~~~~~~~~~~~~k~lkvllsiGG~~~s~~~~~~ 80 (345)
T cd02878 2 NIAYFEAYNLDRPCLNMDVTQI-DTSKYTHIHFAFANITSDFSVDVSSVQEQFSDFKKLKGVKKILSFGGWDFSTSPSTY 80 (345)
T ss_pred EEEEEChhhcCCCCCCCCHhHC-CcccCCEEEEEeEeecCCCeEeecccHHHHHHHHhhcCcEEEEEEeCCCCCCCCccc
Confidence 5678865422 1123444 356899999999943 1 111111 12335699999999986431
Q ss_pred -cc---CCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCC
Q 048651 87 -YL---SFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGT 131 (134)
Q Consensus 87 -~l---~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~ 131 (134)
.| .+++..++|++++.+.. .++.+||+|||+|.+.
T Consensus 81 ~~f~~~~~~~~R~~Fi~si~~~~----------~~~~fDGidiDwE~P~ 119 (345)
T cd02878 81 QIFRDAVKPANRDTFANNVVNFV----------NKYNLDGVDFDWEYPG 119 (345)
T ss_pred hhhHhhcCHHHHHHHHHHHHHHH----------HHcCCCceeecccCCc
Confidence 12 26788899999999866 5566999999999753
No 13
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=98.71 E-value=8.2e-08 Score=78.88 Aligned_cols=96 Identities=23% Similarity=0.244 Sum_probs=66.9
Q ss_pred ceEEEccCCCCC---CchhhhhcCCCccEEEeeeCCCc------h---------hHhHHHHHHC--CCeEEEeeecCCcc
Q 048651 26 GITIYWVQNGIQ---STFMETCTTSNYDFVNLAFCPPL------E---------IIDIKSCQAK--GVKVMLSIEGGAGN 85 (134)
Q Consensus 26 ~i~~YWGq~~~~---~~L~~~C~~~~ydiV~laF~~P~------~---------~~dI~~CQ~~--GkkVlLSlGG~~g~ 85 (134)
.+++||...... -.+.+. ....+++|+.+|+.+. + -..++..+++ ++|||+||||+..+
T Consensus 1 ~~~~Y~~~w~~~~~~~~~~~~-~~~~~thv~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~kvl~svgg~~~s 79 (334)
T smart00636 1 RVVGYFTNWGVYGRNFPVDDI-PASKLTHIIYAFANIDPDGTVTIGDEWADIGNFGQLKALKKKNPGLKVLLSIGGWTES 79 (334)
T ss_pred CEEEEECchhccCCCCChhHC-CcccCcEEEEeeeeeCCCCCEeeCCcchhhhhHHHHHHHHHhCCCCEEEEEEeCCCCC
Confidence 367888754321 234443 3456899999999321 1 1236666665 99999999997642
Q ss_pred ----cccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCCC
Q 048651 86 ----YYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGTI 132 (134)
Q Consensus 86 ----~~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~~ 132 (134)
.-+.+++..++|++++-+.. .++.+||+|||+|.+.+
T Consensus 80 ~~f~~~~~~~~~r~~fi~~i~~~~----------~~~~~DGidiDwE~~~~ 120 (334)
T smart00636 80 DNFSSMLSDPASRKKFIDSIVSFL----------KKYGFDGIDIDWEYPGA 120 (334)
T ss_pred cchhHHHCCHHHHHHHHHHHHHHH----------HHcCCCeEEECCcCCCC
Confidence 23566778899999999877 55669999999998754
No 14
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=98.70 E-value=4.2e-08 Score=80.28 Aligned_cols=90 Identities=23% Similarity=0.113 Sum_probs=58.1
Q ss_pred cCCCCCCchhhhhcCC-CccEEEeeeC-C------Cc-------------hhHhHHHHHHC--CCeEEEeeecCCcc--c
Q 048651 32 VQNGIQSTFMETCTTS-NYDFVNLAFC-P------PL-------------EIIDIKSCQAK--GVKVMLSIEGGAGN--Y 86 (134)
Q Consensus 32 Gq~~~~~~L~~~C~~~-~ydiV~laF~-~------P~-------------~~~dI~~CQ~~--GkkVlLSlGG~~g~--~ 86 (134)
|-..+..++++.-.+. -..+|++||+ + |. ..++++..+++ +.||||||||++.. .
T Consensus 7 ~~~~~~~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~p~lKvllSiGG~~~~~~~ 86 (253)
T cd06544 7 GADFNGVTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYWDTENLTPEAVKSIKAQHPNVKVVISIGGRGVQNNP 86 (253)
T ss_pred ccCCCCccccccCCCCCeeEEEEEEeeeecccccCCCCCccccccCccccCHHHHHHHHHhCCCcEEEEEeCCCCCCCCc
Confidence 3333344566664332 2455889999 1 11 33577777764 58999999999753 2
Q ss_pred ccCCHH----HHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCC
Q 048651 87 YLSFSE----DARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGT 131 (134)
Q Consensus 87 ~l~s~~----~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~ 131 (134)
...+.+ -+++|++++.+.. .++.+||+|+|+|++.
T Consensus 87 ~~~~~~~~~~~~~~fv~S~~~~l----------~~~~fDGiDiDwE~~~ 125 (253)
T cd06544 87 TPFDPSNVDSWVSNAVSSLTSII----------QTYNLDGIDIDYEHFP 125 (253)
T ss_pred cccCchhhhhHHHHHHHHHHHHH----------HHhCCCceeeecccCC
Confidence 233332 3455678888765 5566999999999864
No 15
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=98.64 E-value=1.2e-07 Score=79.03 Aligned_cols=76 Identities=17% Similarity=0.124 Sum_probs=56.4
Q ss_pred CCCccEEEeeeCC--C---------------chhHhHHHHHHC--CCeEEEeeecCCcc-----cccCCHHHHHHHHHHH
Q 048651 46 TSNYDFVNLAFCP--P---------------LEIIDIKSCQAK--GVKVMLSIEGGAGN-----YYLSFSEDARQVADYL 101 (134)
Q Consensus 46 ~~~ydiV~laF~~--P---------------~~~~dI~~CQ~~--GkkVlLSlGG~~g~-----~~l~s~~~A~~fA~~L 101 (134)
...+++|+++|+. + ..-+.+...+++ +.||+|||||++.+ .-+.+++..++|++++
T Consensus 25 ~~~~Thv~y~f~~i~~~g~~~~~~~~~d~~~~~~~~~~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~i 104 (362)
T cd02872 25 PFLCTHIIYAFAGLNPDGNIIILDEWNDIDLGLYERFNALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSA 104 (362)
T ss_pred cccCCEEEEeeEEECCCCCEEecCchhhhhhhHHHHHHHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHHH
Confidence 4568999999992 1 123345555554 89999999998632 2256778889999999
Q ss_pred HHhhCCCCCCCcCCCCcccceeeeecCCCC
Q 048651 102 WNNFLGGQSSSRPLGNAVLDGIDFGIEGGT 131 (134)
Q Consensus 102 w~~f~~g~s~~RPfg~~~lDG~D~DiE~g~ 131 (134)
.+.. .++.+||+|||+|.+.
T Consensus 105 v~~l----------~~~~~DGidiDwE~p~ 124 (362)
T cd02872 105 IAFL----------RKYGFDGLDLDWEYPG 124 (362)
T ss_pred HHHH----------HHcCCCCeeeeeeccc
Confidence 9876 5556999999999864
No 16
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=98.58 E-value=2.2e-07 Score=81.85 Aligned_cols=99 Identities=19% Similarity=0.181 Sum_probs=67.2
Q ss_pred CCCceEEEccCCCCCCc----hhhhhcCCCccEEEeeeC------------------------------CCc------hh
Q 048651 23 DASGITIYWVQNGIQST----FMETCTTSNYDFVNLAFC------------------------------PPL------EI 62 (134)
Q Consensus 23 ~~~~i~~YWGq~~~~~~----L~~~C~~~~ydiV~laF~------------------------------~P~------~~ 62 (134)
....|++|+.+...-++ ..+. .-.++++|+.||+ +|. .-
T Consensus 36 ~~~rvvgYY~sWs~~d~~~y~~~DI-p~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G~~ 114 (441)
T COG3325 36 DQFKVVGYYTSWSQYDRQDYFPGDI-PLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKGHF 114 (441)
T ss_pred CCceEEEEecccccCCCcccccccC-CHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccchH
Confidence 34568899776443222 2222 1246889999999 121 12
Q ss_pred HhHHHHHHCC--CeEEEeeecCCcccccC----CHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCCC
Q 048651 63 IDIKSCQAKG--VKVMLSIEGGAGNYYLS----FSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGTI 132 (134)
Q Consensus 63 ~dI~~CQ~~G--kkVlLSlGG~~g~~~l~----s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~~ 132 (134)
..+...|++- +|+++||||++-+-.|. +++..+.||++....+ |-++ +||+|+|+|++++
T Consensus 115 ~~L~~lk~~~~d~k~l~SIGGWs~S~~F~~~aad~a~re~Fa~saVe~~-------r~~~---FDGVDIDWEYP~~ 180 (441)
T COG3325 115 GALFDLKATYPDLKTLISIGGWSDSGGFSDMAADDASRENFAKSAVEFM-------RTYG---FDGVDIDWEYPGS 180 (441)
T ss_pred HHHHHHhhhCCCceEEEeecccccCCCcchhhcCHHHHHHHHHHHHHHH-------HhcC---CCceeeccccCCC
Confidence 3445555543 59999999997543333 3588999999999987 5666 9999999999875
No 17
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=98.58 E-value=2.8e-07 Score=76.43 Aligned_cols=57 Identities=21% Similarity=0.180 Sum_probs=43.9
Q ss_pred HHHHHH--CCCeEEEeeecCCccc----ccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCC
Q 048651 65 IKSCQA--KGVKVMLSIEGGAGNY----YLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGT 131 (134)
Q Consensus 65 I~~CQ~--~GkkVlLSlGG~~g~~----~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~ 131 (134)
++..++ .+.|||+||||++.+- -+.+++..++|++++-+.. .++.+||+|||+|++.
T Consensus 75 ~~~lk~~~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi~siv~~l----------~~~~fDGidiDwE~p~ 137 (322)
T cd06548 75 LRKLKQKNPHLKILLSIGGWTWSGGFSDAAATEASRAKFADSAVDFI----------RKYGFDGIDIDWEYPG 137 (322)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHHHHHHHHH----------HhcCCCeEEECCcCCC
Confidence 444444 4689999999986542 2456778889999999876 5566999999999865
No 18
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=98.53 E-value=5.5e-07 Score=73.91 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=68.7
Q ss_pred ceEEEccCCCCC--CchhhhhcCCCccEEEeeeC--CC------c-hhHhHHHHHHCCCeEEEeeecCCcc--------c
Q 048651 26 GITIYWVQNGIQ--STFMETCTTSNYDFVNLAFC--PP------L-EIIDIKSCQAKGVKVMLSIEGGAGN--------Y 86 (134)
Q Consensus 26 ~i~~YWGq~~~~--~~L~~~C~~~~ydiV~laF~--~P------~-~~~dI~~CQ~~GkkVlLSlGG~~g~--------~ 86 (134)
.+.+|.-+.... ..|+..|+ ..++|...+. .| . ..+=++.++++|+||++||||..+. .
T Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~--~lt~v~p~w~~~~~~g~~~~~~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~ 80 (313)
T cd02874 3 EVLGYYTPRNGSDYESLRANAP--YLTYIAPFWYGVDADGTLTGLPDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHA 80 (313)
T ss_pred eEEEEEecCCCchHHHHHHhcC--CCCEEEEEEEEEcCCCCCCCCCCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHH
Confidence 456776653333 46777765 7888876555 22 1 3455888999999999999997521 2
Q ss_pred ccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCC
Q 048651 87 YLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGT 131 (134)
Q Consensus 87 ~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~ 131 (134)
-+++++..++|++++-+.. .++.+||+|||+|...
T Consensus 81 ~l~~~~~r~~fi~~iv~~l----------~~~~~DGidiDwE~~~ 115 (313)
T cd02874 81 VLSNPEARQRLINNILALA----------KKYGYDGVNIDFENVP 115 (313)
T ss_pred HhcCHHHHHHHHHHHHHHH----------HHhCCCcEEEecccCC
Confidence 3677788889999999876 5667999999999864
No 19
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=98.45 E-value=5.1e-07 Score=78.01 Aligned_cols=74 Identities=18% Similarity=0.181 Sum_probs=54.6
Q ss_pred CccEEEeeeC--CCc----------------hhHhHHHHHH--CCCeEEEeeecCCcc----------cccCCHHHHHHH
Q 048651 48 NYDFVNLAFC--PPL----------------EIIDIKSCQA--KGVKVMLSIEGGAGN----------YYLSFSEDARQV 97 (134)
Q Consensus 48 ~ydiV~laF~--~P~----------------~~~dI~~CQ~--~GkkVlLSlGG~~g~----------~~l~s~~~A~~f 97 (134)
.+.+|+.+|+ +|. .-+.+...++ .+.||||||||++.+ .-+.+++..++|
T Consensus 30 ~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~lKvllSiGGw~~~~~~~~s~~fs~~~~~~~~R~~F 109 (413)
T cd02873 30 FCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAITSLKRKYPHLKVLLSVGGDRDTDEEGENEKYLLLLESSESRNAF 109 (413)
T ss_pred cCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHHHHHhhCCCCeEEEeecCCCCCCCcccchhhHHHhCCHHHHHHH
Confidence 3799999999 231 1123444544 489999999999632 235677888999
Q ss_pred HHHHHHhhCCCCCCCcCCCCcccceeeeecCCCC
Q 048651 98 ADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGT 131 (134)
Q Consensus 98 A~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~ 131 (134)
++++-+.. .++.+||+|||+|.+.
T Consensus 110 i~siv~~l----------~~~~fDGidiDWEyP~ 133 (413)
T cd02873 110 INSAHSLL----------KTYGFDGLDLAWQFPK 133 (413)
T ss_pred HHHHHHHH----------HHcCCCCeEeeeeCCC
Confidence 99999866 5566999999999864
No 20
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=97.95 E-value=1.9e-05 Score=67.22 Aligned_cols=71 Identities=18% Similarity=0.066 Sum_probs=51.9
Q ss_pred CCccEEEeeeCCCchhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeee
Q 048651 47 SNYDFVNLAFCPPLEIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFG 126 (134)
Q Consensus 47 ~~ydiV~laF~~P~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~D 126 (134)
...+.|.+ |-.+. .+-++.+|++|+||+++. +. ..-.+.+++..++|++++.+.. .++.+||+|||
T Consensus 54 ~~~tti~~-~~~~~-~~~~~~A~~~~v~v~~~~-~~-~~~~l~~~~~R~~fi~siv~~~----------~~~gfDGIdID 119 (358)
T cd02875 54 SKVTTIAI-FGDID-DELLCYAHSKGVRLVLKG-DV-PLEQISNPTYRTQWIQQKVELA----------KSQFMDGINID 119 (358)
T ss_pred ccceEEEe-cCCCC-HHHHHHHHHcCCEEEEEC-cc-CHHHcCCHHHHHHHHHHHHHHH----------HHhCCCeEEEc
Confidence 34444444 43322 366889999999999982 21 2234788999999999999966 55669999999
Q ss_pred cCCCC
Q 048651 127 IEGGT 131 (134)
Q Consensus 127 iE~g~ 131 (134)
+|++.
T Consensus 120 wE~p~ 124 (358)
T cd02875 120 IEQPI 124 (358)
T ss_pred ccCCC
Confidence 99875
No 21
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=97.93 E-value=3.3e-05 Score=67.42 Aligned_cols=82 Identities=20% Similarity=0.157 Sum_probs=60.8
Q ss_pred chhhhhcCCCccEEEeeeCCC---------------chhHhHHHHHHC--CCeEEEeeecC-Ccc----cccCCHHHHHH
Q 048651 39 TFMETCTTSNYDFVNLAFCPP---------------LEIIDIKSCQAK--GVKVMLSIEGG-AGN----YYLSFSEDARQ 96 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~~P---------------~~~~dI~~CQ~~--GkkVlLSlGG~-~g~----~~l~s~~~A~~ 96 (134)
.+.+. +.....+++.+|+.+ .+.+-+...+.+ ..||||||||. ..+ .-+++.+..+.
T Consensus 72 ~~~~~-~~~~~TH~vfafa~~~~~~~~~~~~~~~~~~f~~~~~~~k~~n~~vK~llSIGG~~~ns~~fs~~~s~~~~r~~ 150 (432)
T KOG2806|consen 72 TLEDQ-DPLKCTHLVYAFAKMKRVGYVVFCGARTMNRFSSYNQTAKSSNPTVKVMISIGGSHGNSGLFSLVLSDRMIRAK 150 (432)
T ss_pred Ccccc-ChhhcCcceEEEeeecccccEEeccchhhhhhHHHHHHHHhhCCCceEEEEecCCCCCccchhhhhcChHHHHH
Confidence 44444 245788899999932 255666677754 69999999998 322 23556788999
Q ss_pred HHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCC
Q 048651 97 VADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGT 131 (134)
Q Consensus 97 fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~ 131 (134)
|.+++.+.. .++.+||+|+|||.+.
T Consensus 151 FI~Sii~fl----------~~~~fDGvDL~We~P~ 175 (432)
T KOG2806|consen 151 FIESVVSFI----------KDYGFDGVDLAWEWPL 175 (432)
T ss_pred HHHHHHHHH----------HHcCCCceeeeeECCC
Confidence 999999855 6667999999999983
No 22
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=97.82 E-value=5.1e-05 Score=62.77 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=62.4
Q ss_pred ceEEEccCCCCC--CchhhhhcCCCccEEEeeeCC--Cc-----h-------hHhHHHHHH--CCCeEE--EeeecCCcc
Q 048651 26 GITIYWVQNGIQ--STFMETCTTSNYDFVNLAFCP--PL-----E-------IIDIKSCQA--KGVKVM--LSIEGGAGN 85 (134)
Q Consensus 26 ~i~~YWGq~~~~--~~L~~~C~~~~ydiV~laF~~--P~-----~-------~~dI~~CQ~--~GkkVl--LSlGG~~g~ 85 (134)
.+.+||-..... ..+...+ ..+++|+.+|+. +. + ..-++..++ .+.||+ +|+||+...
T Consensus 4 ~~~~y~~~W~~~~~~~~~~~~--~~lthv~~~f~~i~~~g~~~~~~~~~~~~~~~~~~lk~~~~~lkvlp~i~~gg~~~~ 81 (318)
T cd02876 4 PVLGYVTPWNSHGYDVAKKFA--AKFTHVSPVWLQIKRKGNKFVIEGTHDIDKGWIEEVRKANKNIKILPRVLFEGWSYQ 81 (318)
T ss_pred ceEEEEcCcCccchHHHHHHh--ccCCEecceEEEEecCCCeeeeecCcchhhHHHHHHHhhCCCcEEEeEEEECCCCHH
Confidence 466787643221 2344333 479999999992 21 1 111234444 479999 778998653
Q ss_pred ---cccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeee-cCCCC
Q 048651 86 ---YYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFG-IEGGT 131 (134)
Q Consensus 86 ---~~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~D-iE~g~ 131 (134)
.-+++++..++|++++-+.. .++.+||+||| +|++.
T Consensus 82 ~f~~~~~~~~~R~~fi~s~~~~~----------~~~~~DGidiD~we~p~ 121 (318)
T cd02876 82 DLQSLLNDEQEREKLIKLLVTTA----------KKNHFDGIVLEVWSQLA 121 (318)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHH----------HHcCCCcEEEechhhhc
Confidence 34677888899999999876 56669999999 88754
No 23
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=97.05 E-value=0.0023 Score=52.85 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=52.5
Q ss_pred chhhhhcCCCccEEEeeeC-------------CCchhHhHHHHHHCC--CeEEEeeecCCcc-----cccCCHHHHHHHH
Q 048651 39 TFMETCTTSNYDFVNLAFC-------------PPLEIIDIKSCQAKG--VKVMLSIEGGAGN-----YYLSFSEDARQVA 98 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~-------------~P~~~~dI~~CQ~~G--kkVlLSlGG~~g~-----~~l~s~~~A~~fA 98 (134)
+|...|. ..|+|..-+. +|.....++..+++. .+++.+++|+..+ --+++.+..++|+
T Consensus 16 sl~~~~~--~l~~vsP~W~~~~~~~g~l~~~~d~~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~R~~fi 93 (298)
T cd06549 16 SLKRHAP--RLDWLVPEWLNLTGPEGRIDVFVDPQGVAIIAAAKAHPKVLPLVQNISGGAWDGKNIARLLADPSARAKFI 93 (298)
T ss_pred HHHHhhc--cCCEEeceeEEEecCCCceeccCChHHHHHHHHHHcCCceeEEEEecCCCCCCHHHHHHHhcCHHHHHHHH
Confidence 5666654 5666665444 222222344444433 3456688876432 3477788889999
Q ss_pred HHHHHhhCCCCCCCcCCCCcccceeeeecCCCC
Q 048651 99 DYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGT 131 (134)
Q Consensus 99 ~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~ 131 (134)
+++.+.. .++.+||+|||+|...
T Consensus 94 ~~iv~~~----------~~~~~dGidiD~E~~~ 116 (298)
T cd06549 94 ANIAAYL----------ERNQADGIVLDFEELP 116 (298)
T ss_pred HHHHHHH----------HHhCCCCEEEecCCCC
Confidence 9999876 5666999999999854
No 24
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=94.09 E-value=0.15 Score=40.77 Aligned_cols=56 Identities=18% Similarity=0.120 Sum_probs=47.1
Q ss_pred EEEccCCCCCCchhhhhcCCCccEEEeeeCCC----chhHhHHHHHHCCCeEEEeeecCC
Q 048651 28 TIYWVQNGIQSTFMETCTTSNYDFVNLAFCPP----LEIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 28 ~~YWGq~~~~~~L~~~C~~~~ydiV~laF~~P----~~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
++|-|.+-...++.+.+...+.|+|-+|++.+ .+.+-|+.++++|.+|.+=+||..
T Consensus 119 Vi~LG~~vp~e~~v~~~~~~~~~~V~lS~~~~~~~~~~~~~i~~L~~~~~~~~i~vGG~~ 178 (213)
T cd02069 119 VIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGAA 178 (213)
T ss_pred EEECCCCCCHHHHHHHHHHcCCCEEEEccchhccHHHHHHHHHHHHhcCCCCeEEEEChh
Confidence 56777666666788888899999999999954 488889999999999999999974
No 25
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=94.09 E-value=0.16 Score=39.66 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=45.4
Q ss_pred EEEccCCCCCCchhhhhcCCCccEEEeeeCC----CchhHhHHHHHHCCC--eEEEeeecCC
Q 048651 28 TIYWVQNGIQSTFMETCTTSNYDFVNLAFCP----PLEIIDIKSCQAKGV--KVMLSIEGGA 83 (134)
Q Consensus 28 ~~YWGq~~~~~~L~~~C~~~~ydiV~laF~~----P~~~~dI~~CQ~~Gk--kVlLSlGG~~ 83 (134)
++|.|.+-....+.+.+...++|+|-+|+.. |.+.+-|+.+|+++. +|-+=+||..
T Consensus 113 vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~ 174 (201)
T cd02070 113 VIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLRDKVKVMVGGAP 174 (201)
T ss_pred EEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCCcCCeEEEECCc
Confidence 3677765555678888888899999999984 348888999999987 8888899974
No 26
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=90.65 E-value=1.1 Score=34.37 Aligned_cols=51 Identities=22% Similarity=0.338 Sum_probs=38.1
Q ss_pred CCccEEEe------eeCCCchhHhHHHHHHCCCeEEEeeecCCcccccC---CHHHHHHHHHHHHHhh
Q 048651 47 SNYDFVNL------AFCPPLEIIDIKSCQAKGVKVMLSIEGGAGNYYLS---FSEDARQVADYLWNNF 105 (134)
Q Consensus 47 ~~ydiV~l------aF~~P~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~---s~~~A~~fA~~Lw~~f 105 (134)
.++++|+| .+.||.+.+.++.|++.|.+| |.|.+. +.++|++-|++.++..
T Consensus 21 ~g~~fviikateG~~~~D~~f~~n~~~a~~aGl~v--------G~Yhf~~~~~~~~a~~eA~~f~~~~ 80 (177)
T cd06523 21 KQLDLVIIRVQYGSNYVDLKYKNNIKEFKKRGIPF--------GVYAFARGTSTADAKAEARDFYNRA 80 (177)
T ss_pred CCCCEEEEEEeCCCcccCHHHHHHHHHHHHcCCCe--------EEEEEeccCCHHHHHHHHHHHHHHh
Confidence 46666665 345899999999999999875 344333 5668888898888865
No 27
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=89.29 E-value=0.65 Score=34.75 Aligned_cols=60 Identities=15% Similarity=0.088 Sum_probs=48.4
Q ss_pred CCceEEEccCCCCCCchhhhhcCCCccEEEeeeCCC----chhHhHHHHHHCCC-eEEEeeecCC
Q 048651 24 ASGITIYWVQNGIQSTFMETCTTSNYDFVNLAFCPP----LEIIDIKSCQAKGV-KVMLSIEGGA 83 (134)
Q Consensus 24 ~~~i~~YWGq~~~~~~L~~~C~~~~ydiV~laF~~P----~~~~dI~~CQ~~Gk-kVlLSlGG~~ 83 (134)
++-=++|-|.+-....+.+.+...+.|+|-+|++.+ .+.+-+..+|++|. .+.+=+||..
T Consensus 30 ~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~ 94 (137)
T PRK02261 30 AGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGGNL 94 (137)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEECCC
Confidence 344478999877777889999999999999999954 37788899999855 6777888875
No 28
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=88.82 E-value=0.82 Score=32.25 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=44.9
Q ss_pred EEEccCCCCCCchhhhhcCCCccEEEeeeCCC----chhHhHHHHHHCCC-eEEEeeecCC
Q 048651 28 TIYWVQNGIQSTFMETCTTSNYDFVNLAFCPP----LEIIDIKSCQAKGV-KVMLSIEGGA 83 (134)
Q Consensus 28 ~~YWGq~~~~~~L~~~C~~~~ydiV~laF~~P----~~~~dI~~CQ~~Gk-kVlLSlGG~~ 83 (134)
++|-|.+-....+.+.+...++|+|.+|+..+ .+.+-|+.+|+++. ++.+=+||..
T Consensus 30 V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~ 90 (119)
T cd02067 30 VIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVGGAI 90 (119)
T ss_pred EEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEECCC
Confidence 47888665556788888889999999999843 26677888898887 8999999975
No 29
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=87.35 E-value=0.92 Score=32.71 Aligned_cols=58 Identities=14% Similarity=0.028 Sum_probs=44.5
Q ss_pred ceEEEccCCCCCCchhhhhcCCCccEEEeeeCCCc----hhHhHHHHHHCCC-eEEEeeecCC
Q 048651 26 GITIYWVQNGIQSTFMETCTTSNYDFVNLAFCPPL----EIIDIKSCQAKGV-KVMLSIEGGA 83 (134)
Q Consensus 26 ~i~~YWGq~~~~~~L~~~C~~~~ydiV~laF~~P~----~~~dI~~CQ~~Gk-kVlLSlGG~~ 83 (134)
==++|=|.+-....+.+.....+.|+|.||+.++. +.+-++.++++|. ++.+=+||..
T Consensus 28 ~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~ 90 (122)
T cd02071 28 FEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGII 90 (122)
T ss_pred CEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 34678887655446666667789999999999653 6677888999977 8888899974
No 30
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=86.85 E-value=1 Score=35.32 Aligned_cols=56 Identities=11% Similarity=-0.029 Sum_probs=45.1
Q ss_pred EEEccCCCCCCchhhhhcCCCccEEEeeeCCC----chhHhHHHHHHCCC--eEEEeeecCC
Q 048651 28 TIYWVQNGIQSTFMETCTTSNYDFVNLAFCPP----LEIIDIKSCQAKGV--KVMLSIEGGA 83 (134)
Q Consensus 28 ~~YWGq~~~~~~L~~~C~~~~ydiV~laF~~P----~~~~dI~~CQ~~Gk--kVlLSlGG~~ 83 (134)
++|-|.+-...++.+.....+.|+|-+|++.+ .+.+-|+.++++|. +|.+=+||..
T Consensus 115 vi~LG~~vp~e~~v~~~~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~ 176 (197)
T TIGR02370 115 VIDLGRDVPIDTVVEKVKKEKPLMLTGSALMTTTMYGQKDINDKLKEEGYRDSVKFMVGGAP 176 (197)
T ss_pred EEECCCCCCHHHHHHHHHHcCCCEEEEccccccCHHHHHHHHHHHHHcCCCCCCEEEEEChh
Confidence 55677666556788888888999999999943 48889999999965 4888899975
No 31
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=84.99 E-value=4.5 Score=31.37 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=36.3
Q ss_pred CCccEEEe------eeCCCchhHhHHHHHHCCCeEEEeeecCCcccccC----CHHHHHHHHHHHHHhh
Q 048651 47 SNYDFVNL------AFCPPLEIIDIKSCQAKGVKVMLSIEGGAGNYYLS----FSEDARQVADYLWNNF 105 (134)
Q Consensus 47 ~~ydiV~l------aF~~P~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~----s~~~A~~fA~~Lw~~f 105 (134)
..+|.|+| .+.||.+.+.++.|++.|++| |.|.+. +.++|++-|++.++..
T Consensus 20 ~g~~fviiKateG~~~~d~~~~~n~~~A~~aGl~v--------G~Yhf~~~~~~~~~a~~eA~~f~~~~ 80 (196)
T cd06415 20 AGAKFAIVKISEGTNYVNPKASAQVSSAIANGKMT--------GGYHFARFGGSVSQAKYEADYFLNSA 80 (196)
T ss_pred CCCcEEEEEEcCCCccCCccHHHHHHHHHHCCCee--------EEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 45676665 356999999999999999975 445542 4556777777766654
No 32
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=83.95 E-value=1.5 Score=37.63 Aligned_cols=59 Identities=24% Similarity=0.131 Sum_probs=41.3
Q ss_pred HhHHHHHHCCCeEEEeeecCC-cc-----cccCC-HHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCC
Q 048651 63 IDIKSCQAKGVKVMLSIEGGA-GN-----YYLSF-SEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGT 131 (134)
Q Consensus 63 ~dI~~CQ~~GkkVlLSlGG~~-g~-----~~l~s-~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~ 131 (134)
.-|..++++|+|||-.|-=.. +. -=|.+ ++....+|+.|.++- ..+.+||+-||+|...
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~la----------k~yGfDGw~iN~E~~~ 115 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVA----------KYYGFDGWLINIETEL 115 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHH----------HHhCCCceEeeeeccC
Confidence 457899999999987763111 11 11444 566677888888765 4556999999999865
No 33
>cd06417 GH25_LysA-like LysA is a cell wall endolysin produced by Lactobacillus fermentum, which degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. The N-terminal glycosyl hydrolase family 25 (GH25) domain of LysA has sequence similarity with other murein hydrolase catalytic domains while the C-terminal domain has sequence similarity with putative bacterial cell wall-binding SH3b domains. This domain family also includes LysL of Lactococcus lactis.
Probab=80.96 E-value=2.2 Score=33.00 Aligned_cols=42 Identities=26% Similarity=0.303 Sum_probs=30.0
Q ss_pred eCCCchhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHHHHHHHhh
Q 048651 56 FCPPLEIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNF 105 (134)
Q Consensus 56 F~~P~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f 105 (134)
|.||.+.+.++.|++.|++| |.|.+.+..+|++=|++.++..
T Consensus 33 ~~D~~f~~n~~~A~~aGl~~--------G~Yhf~~~~~a~~qA~~f~~~~ 74 (195)
T cd06417 33 YVNPSWRSQAAQAIAAGKLL--------GLYHYANGGNAIAEADYFLNNI 74 (195)
T ss_pred cCChHHHHHHHHHHHcCCce--------EEEEECCCCCHHHHHHHHHHHh
Confidence 44899999999999999864 4566655445555566666654
No 34
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=80.91 E-value=3.9 Score=40.97 Aligned_cols=75 Identities=20% Similarity=0.153 Sum_probs=56.7
Q ss_pred EEEccCCCCCCchhhhhcCCCccEEEeeeCCC----chhHhHHHHHHCCCeEEEeeecCCcc----------------cc
Q 048651 28 TIYWVQNGIQSTFMETCTTSNYDFVNLAFCPP----LEIIDIKSCQAKGVKVMLSIEGGAGN----------------YY 87 (134)
Q Consensus 28 ~~YWGq~~~~~~L~~~C~~~~ydiV~laF~~P----~~~~dI~~CQ~~GkkVlLSlGG~~g~----------------~~ 87 (134)
++|-|.+-....+.+.+...+.|+|-+|++-+ .+..-|+.+|++|.+|-+=+||+.-+ ++
T Consensus 782 VIdLG~~vp~e~iv~aa~e~~~diVgLS~L~t~s~~~m~~~i~~L~~~g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y 861 (1229)
T PRK09490 782 VIDLGVMVPAEKILETAKEENADIIGLSGLITPSLDEMVHVAKEMERQGFTIPLLIGGATTSKAHTAVKIAPNYSGPVVY 861 (1229)
T ss_pred EEECCCCCCHHHHHHHHHHhCCCEEEEcCcchhhHHHHHHHHHHHHhcCCCCeEEEEeeccchhhhhhhhhhcccCCcEE
Confidence 45666555555678888888999999999943 38888999999999999999998622 45
Q ss_pred cCCHHHHHHHHHHHH
Q 048651 88 LSFSEDARQVADYLW 102 (134)
Q Consensus 88 l~s~~~A~~fA~~Lw 102 (134)
-.++.++..+|+.|-
T Consensus 862 ~~DA~~~v~~~~~l~ 876 (1229)
T PRK09490 862 VTDASRAVGVVSSLL 876 (1229)
T ss_pred ecCHHHHHHHHHHHh
Confidence 566667777666554
No 35
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=79.61 E-value=3.4 Score=27.86 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=23.9
Q ss_pred CCCccEEEeeeCCCc--hhHhHHHHHHCCCeEE--EeeecC
Q 048651 46 TSNYDFVNLAFCPPL--EIIDIKSCQAKGVKVM--LSIEGG 82 (134)
Q Consensus 46 ~~~ydiV~laF~~P~--~~~dI~~CQ~~GkkVl--LSlGG~ 82 (134)
..+||+++| |+. -.++|+..|++|+||+ +|+|-.
T Consensus 24 ~~~~~v~~i---D~~~~~~~~I~~L~~~G~~vicY~s~Gs~ 61 (74)
T PF03537_consen 24 DPDVDVVVI---DLFDFSKEEIARLKAQGKKVICYFSIGSA 61 (74)
T ss_dssp TSS-SEEEE----SBS--HHHHHHHHHTT-EEEEEEESSEE
T ss_pred CCCCCEEEE---CCccCCHHHHHHHHHCCCEEEEEEeCcee
Confidence 478999998 554 4689999999999998 566543
No 36
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=79.38 E-value=3.1 Score=33.07 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=33.9
Q ss_pred hhhcCCCccEEEeeeCCC---chhHhHHHHHHCCCeEEEeeecC
Q 048651 42 ETCTTSNYDFVNLAFCPP---LEIIDIKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 42 ~~C~~~~ydiV~laF~~P---~~~~dI~~CQ~~GkkVlLSlGG~ 82 (134)
++|.+.+.+||++||-.| .+.+-|++++++|+-|+.|-|=.
T Consensus 87 ~~a~~~g~~VIn~S~g~~~~~~l~~ai~~a~~~gilvv~AaGN~ 130 (239)
T cd05561 87 DWLAEQGVRVVNISLAGPPNALLAAAVAAAAARGMVLVAAAGND 130 (239)
T ss_pred HHHHHCCCCEEEeCCCCCCCHHHHHHHHHHHHCCCEEEEecCCC
Confidence 356778999999999854 37888999999999999888754
No 37
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=79.27 E-value=4.1 Score=31.10 Aligned_cols=70 Identities=16% Similarity=0.084 Sum_probs=52.1
Q ss_pred CCchhhhhcCCCccEEEeeeCCCc-hhHhHHHHHHCCCeEEEeeec--C--C--cccccCCHHHHHHHHHHHHHhhC
Q 048651 37 QSTFMETCTTSNYDFVNLAFCPPL-EIIDIKSCQAKGVKVMLSIEG--G--A--GNYYLSFSEDARQVADYLWNNFL 106 (134)
Q Consensus 37 ~~~L~~~C~~~~ydiV~laF~~P~-~~~dI~~CQ~~GkkVlLSlGG--~--~--g~~~l~s~~~A~~fA~~Lw~~f~ 106 (134)
+.++.+.|-+.++|-|++...+|. +..-++.|+++|++|++---. . . ..+.....+.++..|+.+.+...
T Consensus 44 q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~ 120 (257)
T PF13407_consen 44 QIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLG 120 (257)
T ss_dssp HHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhc
Confidence 445666666778999999888774 778899999999999984333 1 1 22455567788999999998875
No 38
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=77.31 E-value=1.9 Score=37.04 Aligned_cols=58 Identities=17% Similarity=0.134 Sum_probs=38.0
Q ss_pred EEEccCCCCCCchhhhhcCC---CccEEEeeeCCCc--------------hhHhHHHHHHCCCeEEEeee--cCCccc
Q 048651 28 TIYWVQNGIQSTFMETCTTS---NYDFVNLAFCPPL--------------EIIDIKSCQAKGVKVMLSIE--GGAGNY 86 (134)
Q Consensus 28 ~~YWGq~~~~~~L~~~C~~~---~ydiV~laF~~P~--------------~~~dI~~CQ~~GkkVlLSlG--G~~g~~ 86 (134)
+.|+....-.-.|-..++++ .+|+|+.++ ||+ +.+....||++||++--|+| -++..|
T Consensus 207 VLfl~~~PcA~qlv~k~eSp~wi~~D~iNgG~-Dpe~~~~spGSIL~WlNi~~A~~~~~~~~K~lrfSfG~~r~~~~Y 283 (298)
T PRK15312 207 ILYIEGIPCAFDIVLKSESQMNVYFDVPNGAV-KNECMPLSPGSILMWLNISRARHYCQERQKKLIFSIGILKPEWEY 283 (298)
T ss_pred EEEECCcceEEEEEEEecCCCcEEEecccCcc-CcccccCCCccEEEEecHHHHHHHHHhcCCcEEEEecCCCCChhH
Confidence 35554333222333334443 466777664 332 88999999999999999999 877665
No 39
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=76.32 E-value=3 Score=33.60 Aligned_cols=40 Identities=13% Similarity=0.198 Sum_probs=32.4
Q ss_pred hhcCCCccEEEeeeC--C--------CchhHhHHHHHHCCCeEEEeeecC
Q 048651 43 TCTTSNYDFVNLAFC--P--------PLEIIDIKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 43 ~C~~~~ydiV~laF~--~--------P~~~~dI~~CQ~~GkkVlLSlGG~ 82 (134)
+|.+.+.|||++||- . +.+.+-|++++++|+-|+.|-|-.
T Consensus 97 ~Ai~~gadIIn~S~g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~ 146 (247)
T cd07491 97 AAVEKKVDIISMSWTIKKPEDNDNDINELENAIKEALDRGILLFCSASDQ 146 (247)
T ss_pred HHHHCCCcEEEeeeecccccccccchHHHHHHHHHHHhCCeEEEEecCCC
Confidence 566779999999987 2 237888999999999998888743
No 40
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=75.97 E-value=7.3 Score=29.95 Aligned_cols=51 Identities=24% Similarity=0.298 Sum_probs=33.8
Q ss_pred CCccEEEe------eeCCCchhHhHHHHHHCCCeEEEeeecCCcccccCCH-HHHHHHHHHHHHhh
Q 048651 47 SNYDFVNL------AFCPPLEIIDIKSCQAKGVKVMLSIEGGAGNYYLSFS-EDARQVADYLWNNF 105 (134)
Q Consensus 47 ~~ydiV~l------aF~~P~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~-~~A~~fA~~Lw~~f 105 (134)
.++++|+| .|.||.+.+.|+.|++.|++| |.|.+... .+|++=|++.++..
T Consensus 24 ~gi~fviikateG~~~~D~~~~~n~~~a~~aGl~~--------G~Yhf~~~~~~a~~qA~~f~~~~ 81 (194)
T cd06524 24 SPVAFVFIKATEGVDIVDPDFPTNWEGAKEAGIIR--------GAYHFYRPNSDPKQQADNFLNTV 81 (194)
T ss_pred cCccEEEEEecCCCCccChHHHHHHHHHHHcCCce--------EEEEEeecCCCHHHHHHHHHHHc
Confidence 46777766 366899999999999999874 44444322 23334466666654
No 41
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=75.45 E-value=2.3 Score=35.87 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.5
Q ss_pred hhHhHHHHHHCCCeEEEeeecCCccc
Q 048651 61 EIIDIKSCQAKGVKVMLSIEGGAGNY 86 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSlGG~~g~~ 86 (134)
+.+....||++||++.-|+|=++..|
T Consensus 226 i~~A~~~~~~~~k~lrfSfGr~~~~Y 251 (264)
T PF07395_consen 226 IQDAWEYCRAQGKPLRFSFGRPDWDY 251 (264)
T ss_pred HHHHHHHHHHhCCceEEEcCCCChHH
Confidence 78899999999999999999665544
No 42
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=74.61 E-value=16 Score=30.50 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=41.3
Q ss_pred CchhHhHHHHHHCCCeEEEee---------------------------------ecCCcccccCCHHHHHHHHHHHHHhh
Q 048651 59 PLEIIDIKSCQAKGVKVMLSI---------------------------------EGGAGNYYLSFSEDARQVADYLWNNF 105 (134)
Q Consensus 59 P~~~~dI~~CQ~~GkkVlLSl---------------------------------GG~~g~~~l~s~~~A~~fA~~Lw~~f 105 (134)
|...+=|+.++++|.||++.+ +|..+-+.|+.++..+.+.+.+...+
T Consensus 66 Pdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 145 (319)
T cd06591 66 PDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNY 145 (319)
T ss_pred CCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHh
Confidence 445677888889999988865 12234567777876666677666544
Q ss_pred CCCCCCCcCCCCcccceeeeecCC
Q 048651 106 LGGQSSSRPLGNAVLDGIDFGIEG 129 (134)
Q Consensus 106 ~~g~s~~RPfg~~~lDG~D~DiE~ 129 (134)
-+..+||+=+|.-.
T Consensus 146 ----------~~~Gvdg~w~D~~E 159 (319)
T cd06591 146 ----------YDKGVDAWWLDAAE 159 (319)
T ss_pred ----------hcCCCcEEEecCCC
Confidence 45668888777643
No 43
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=73.96 E-value=8.8 Score=38.30 Aligned_cols=75 Identities=19% Similarity=0.114 Sum_probs=54.5
Q ss_pred EEEccCCCCCCchhhhhcCCCccEEEeeeCC----CchhHhHHHHHHCCCeEEEeeecCCcc----------------cc
Q 048651 28 TIYWVQNGIQSTFMETCTTSNYDFVNLAFCP----PLEIIDIKSCQAKGVKVMLSIEGGAGN----------------YY 87 (134)
Q Consensus 28 ~~YWGq~~~~~~L~~~C~~~~ydiV~laF~~----P~~~~dI~~CQ~~GkkVlLSlGG~~g~----------------~~ 87 (134)
++|-|.+-....+.+.+...+.|+|-+|++- +.+..-|+.+|++|.+|-+=+||+.-+ +.
T Consensus 763 VIdLG~dVp~e~iv~aa~e~~~diVgLS~Lmt~t~~~m~~vi~~L~~~g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y 842 (1178)
T TIGR02082 763 VVDLGVMVPIEKILEAAKDHNADVIGLSGLITPSLDEMKEVAEEMNRRGITIPLLIGGAATSKTHTAVKIAPIYKGPVVY 842 (1178)
T ss_pred EEECCCCCCHHHHHHHHHHhCCCEEEEcCcccccHHHHHHHHHHHHhcCCCceEEEeccccchhHHHhhhhhhccCCeEE
Confidence 3455544444567777778899999999994 248888999999999999999997432 34
Q ss_pred cCCHHHHHHHHHHHH
Q 048651 88 LSFSEDARQVADYLW 102 (134)
Q Consensus 88 l~s~~~A~~fA~~Lw 102 (134)
-.++.+|.++|+.|-
T Consensus 843 ~~dA~~av~~~~~l~ 857 (1178)
T TIGR02082 843 VLDASRAVTVMDTLM 857 (1178)
T ss_pred ecCHHHHHHHHHHHh
Confidence 455666666666554
No 44
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=73.32 E-value=13 Score=28.51 Aligned_cols=50 Identities=26% Similarity=0.375 Sum_probs=35.6
Q ss_pred CccEEEee---------eCCCchhHhHHHHHHCCCeEEEeeecCCcccccC---CHHHHHHHHHHHHHhh
Q 048651 48 NYDFVNLA---------FCPPLEIIDIKSCQAKGVKVMLSIEGGAGNYYLS---FSEDARQVADYLWNNF 105 (134)
Q Consensus 48 ~ydiV~la---------F~~P~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~---s~~~A~~fA~~Lw~~f 105 (134)
+++.|+|= |.||.+.+.++.|++.|.+| |.|.+. +.++|++=|++.++..
T Consensus 22 g~~fviiKateG~~g~~~~D~~~~~~~~~A~~aGl~~--------G~YHf~~~~~~~~a~~qA~~f~~~~ 83 (191)
T cd06414 22 GVDFAIIRAGYGGYGELQEDKYFEENIKGAKAAGIPV--------GVYFYSYAVTVAEAREEAEFVLRLI 83 (191)
T ss_pred CCCEEEEEEecCCCcccccCHHHHHHHHHHHHCCCce--------EEEEEEEeCCHHHHHHHHHHHHHHh
Confidence 56666653 88999999999999999864 334442 4556666677777754
No 45
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=70.19 E-value=7.7 Score=29.28 Aligned_cols=42 Identities=36% Similarity=0.556 Sum_probs=30.7
Q ss_pred eCCCchhHhHHHHHHCCCeEEEeeecCCcccccC---CHHHHHHHHHHHHHhh
Q 048651 56 FCPPLEIIDIKSCQAKGVKVMLSIEGGAGNYYLS---FSEDARQVADYLWNNF 105 (134)
Q Consensus 56 F~~P~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~---s~~~A~~fA~~Lw~~f 105 (134)
+.||.+.+.++.|++.|.+| |.|.+. +.++|++=|++.++..
T Consensus 33 ~~D~~~~~n~~~a~~aGl~~--------G~Yhf~~~~~~~~a~~qA~~f~~~~ 77 (181)
T PF01183_consen 33 YVDPYFESNIKNAKAAGLPV--------GAYHFARATNSSDAEAQADYFLNQV 77 (181)
T ss_dssp EE-TTHHHHHHHHHHTTSEE--------EEEEE--TTTHCHHHHHHHHHHHCT
T ss_pred eecchHHHHHHHHHHcCCeE--------EEEEEeccCCcccHHHHHHHHHHHh
Confidence 44899999999999999995 344433 3467777788888866
No 46
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=69.87 E-value=6.1 Score=34.50 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=41.5
Q ss_pred ceEEEccCCCC-CCchhhhhcCCCccEEEeeeC--------------CCc----------hhHhHHHHHHCCCeEEEeee
Q 048651 26 GITIYWVQNGI-QSTFMETCTTSNYDFVNLAFC--------------PPL----------EIIDIKSCQAKGVKVMLSIE 80 (134)
Q Consensus 26 ~i~~YWGq~~~-~~~L~~~C~~~~ydiV~laF~--------------~P~----------~~~dI~~CQ~~GkkVlLSlG 80 (134)
+-++|||.... -.+|.+ .++.|+|+.-++ +|. +..-++.|.++|+||+.--|
T Consensus 3 ~~sGf~gD~~~a~~~l~~---~g~~d~l~~d~LaE~tma~~~~~~~~~p~~gY~~~~~~~L~~~L~~~~~~gIkvI~NaG 79 (362)
T PF07287_consen 3 NGSGFWGDRPDAAVRLAR---GGDVDYLVGDYLAERTMAILARAKRKDPTKGYAPDFVRDLRPLLPAAAEKGIKVITNAG 79 (362)
T ss_pred eecccccCcHHHHHHHHh---cCCCCEEEEecHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 45689995543 233443 678999999888 342 66778899999999999988
Q ss_pred cCCc
Q 048651 81 GGAG 84 (134)
Q Consensus 81 G~~g 84 (134)
|.++
T Consensus 80 g~np 83 (362)
T PF07287_consen 80 GLNP 83 (362)
T ss_pred CCCH
Confidence 8754
No 47
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=68.90 E-value=10 Score=29.28 Aligned_cols=51 Identities=25% Similarity=0.343 Sum_probs=33.5
Q ss_pred CCccEEEe------eeCCCchhHhHHHHHHCCCeEEEeeecCCccccc---CCHHHHHHHHHHHHHhh
Q 048651 47 SNYDFVNL------AFCPPLEIIDIKSCQAKGVKVMLSIEGGAGNYYL---SFSEDARQVADYLWNNF 105 (134)
Q Consensus 47 ~~ydiV~l------aF~~P~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l---~s~~~A~~fA~~Lw~~f 105 (134)
.+++.++| .+.||.+.+.++.|++.|++| |.|.+ .+.++|++=|++.++..
T Consensus 24 ~Gi~faiikateG~~~~D~~~~~n~~~A~~aGl~v--------G~Yhf~~~~~~~~a~~eA~~f~~~~ 83 (192)
T cd06522 24 YGVKAVIVKLTEGTTYRNPYAASQIANAKAAGLKV--------SAYHYAHYTSAADAQAEARYFANTA 83 (192)
T ss_pred cCCCEEEEEEcCCCCccChHHHHHHHHHHHCCCee--------EEEEEEecCChHHHHHHHHHHHHHH
Confidence 35665554 355899999999999999985 44443 34445555555555543
No 48
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=68.18 E-value=11 Score=28.79 Aligned_cols=50 Identities=20% Similarity=0.357 Sum_probs=32.1
Q ss_pred CccEEEee------eCCCchhHhHHHHHHCCCeEEEeeecCCcccccCCH-HHHHHHHHHHHHhh
Q 048651 48 NYDFVNLA------FCPPLEIIDIKSCQAKGVKVMLSIEGGAGNYYLSFS-EDARQVADYLWNNF 105 (134)
Q Consensus 48 ~ydiV~la------F~~P~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~-~~A~~fA~~Lw~~f 105 (134)
+++.|+|- +.||.+.+.|+.|++.|++| |.|.+... .+|++=|++.++..
T Consensus 21 gi~fviiKateG~~y~D~~~~~~~~~a~~aGl~~--------G~Yhy~~~~~~a~~qA~~f~~~~ 77 (184)
T cd06525 21 GVEVVYIKATEGTTFVDSYFNENYNGAKAAGLKV--------GFYHFLVGTSNPEEQAENFYNTI 77 (184)
T ss_pred CCeEEEEEecCCCcccCHhHHHHHHHHHHCCCce--------EEEEEeeCCCCHHHHHHHHHHhc
Confidence 56666653 45899999999999999874 44444332 23444455555543
No 49
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=67.57 E-value=29 Score=29.37 Aligned_cols=64 Identities=9% Similarity=-0.057 Sum_probs=40.8
Q ss_pred CCCchhHhHHHHHHCCCeEEEee------e---------------------------------cCCcccccCCHHHHHHH
Q 048651 57 CPPLEIIDIKSCQAKGVKVMLSI------E---------------------------------GGAGNYYLSFSEDARQV 97 (134)
Q Consensus 57 ~~P~~~~dI~~CQ~~GkkVlLSl------G---------------------------------G~~g~~~l~s~~~A~~f 97 (134)
.+|...+=|+..+++|.||++.+ . |..+-+.|++++..+.+
T Consensus 64 Pdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww 143 (339)
T cd06602 64 PGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWW 143 (339)
T ss_pred CCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHH
Confidence 34433777888888999999887 1 11112456667666666
Q ss_pred HHHHHHhhCCCCCCCcCCCCcccceeeeecCCC
Q 048651 98 ADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGG 130 (134)
Q Consensus 98 A~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g 130 (134)
.+.+-+.+ .+..+||+=+|...+
T Consensus 144 ~~~~~~~~----------~~~Gvdg~w~D~~Ep 166 (339)
T cd06602 144 TDEIKDFH----------DQVPFDGLWIDMNEP 166 (339)
T ss_pred HHHHHHHH----------hcCCCcEEEecCCCC
Confidence 65554433 456699999887544
No 50
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=67.21 E-value=17 Score=34.43 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=17.6
Q ss_pred hhHhHHHHHHCCCeEEEee
Q 048651 61 EIIDIKSCQAKGVKVMLSI 79 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSl 79 (134)
|+.-|+++++.|.-|+|=+
T Consensus 267 fK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 267 FKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHHHHHcCCEEEEEE
Confidence 8889999999999999975
No 51
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=65.78 E-value=11 Score=29.84 Aligned_cols=54 Identities=26% Similarity=0.174 Sum_probs=36.2
Q ss_pred CchhhhhcCCCccEEEeeeCCC-chhHhHHHHHHCCCeEEEe---eecCCcccccCCHHHHHHHH
Q 048651 38 STFMETCTTSNYDFVNLAFCPP-LEIIDIKSCQAKGVKVMLS---IEGGAGNYYLSFSEDARQVA 98 (134)
Q Consensus 38 ~~L~~~C~~~~ydiV~laF~~P-~~~~dI~~CQ~~GkkVlLS---lGG~~g~~~l~s~~~A~~fA 98 (134)
..|.... ++.+++|.+.+.+- ++..-++.|+++||+|++= ++| |+.++.+-+|-
T Consensus 10 ~~l~~al-~s~~~~vfLl~g~I~~l~~~v~~~~~~gK~vfVHiDli~G------l~~D~~~i~~L 67 (175)
T PF04309_consen 10 EDLEKAL-ESDVEVVFLLTGDIGNLKDIVKRLKAAGKKVFVHIDLIEG------LSRDEAGIEYL 67 (175)
T ss_dssp CCCCCCC-CSSSSEEEE-SEECCCHHHHHHHHHHTT-EEEEECCGEET------B-SSHHHHHHH
T ss_pred HHHHHHH-cCCCCEEEEEcCcHHHHHHHHHHHHHcCCEEEEEehhcCC------CCCCHHHHHHH
Confidence 3455554 45688888877753 4888999999999999997 455 55666555443
No 52
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=65.50 E-value=8.3 Score=34.12 Aligned_cols=70 Identities=14% Similarity=0.330 Sum_probs=44.0
Q ss_pred CccEEEeeeC--CCc---hhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHHHHHHHhhCCCC--CCCcCCCC
Q 048651 48 NYDFVNLAFC--PPL---EIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQ--SSSRPLGN 117 (134)
Q Consensus 48 ~ydiV~laF~--~P~---~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f~~g~--s~~RPfg~ 117 (134)
+.+++-++=+ ||. +...|+-|++.++..+|.+||++--=.-.--+.|..+-...|+.|..+. ..--|||.
T Consensus 56 g~~~~E~~GVEPNP~~~Tv~kaV~i~kee~idflLAVGGGSViD~tK~IAa~a~y~GD~Wdi~~~~~~i~~alP~g~ 132 (384)
T COG1979 56 GIEVIEFGGVEPNPRLETLMKAVEICKEENIDFLLAVGGGSVIDGTKFIAAAAKYDGDPWDILTKKHKIKDALPIGT 132 (384)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHHcCceEEEEecCcchhhhHHHHHhhcccCCChHHHHhcCCccccccccce
Confidence 4455555544 454 7789999999999999999998521000111233344456899887653 23457764
No 53
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=63.07 E-value=17 Score=26.17 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=27.7
Q ss_pred CCccEEEeeeCCCchhHhHHHHHHCCCeEEEe
Q 048651 47 SNYDFVNLAFCPPLEIIDIKSCQAKGVKVMLS 78 (134)
Q Consensus 47 ~~ydiV~laF~~P~~~~dI~~CQ~~GkkVlLS 78 (134)
..+|.|+|.=-|..+..-|+..|++|++|.+-
T Consensus 98 ~~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~ 129 (149)
T cd06167 98 RRIDTIVLVSGDSDFVPLVERLRELGKRVIVV 129 (149)
T ss_pred cCCCEEEEEECCccHHHHHHHHHHcCCEEEEE
Confidence 37888888777888999999999999999863
No 54
>PTZ00066 pyruvate kinase; Provisional
Probab=62.92 E-value=16 Score=33.42 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=29.8
Q ss_pred HhHHHHHHCCCeEEEeeecCC--cccccCCHHHHHHHHHHHHH
Q 048651 63 IDIKSCQAKGVKVMLSIEGGA--GNYYLSFSEDARQVADYLWN 103 (134)
Q Consensus 63 ~dI~~CQ~~GkkVlLSlGG~~--g~~~l~s~~~A~~fA~~Lw~ 103 (134)
.=|+.|...||.|+.+-==-. -....+|.+++.++|+-+++
T Consensus 299 ~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVaNAV~D 341 (513)
T PTZ00066 299 MMISKCNVAGKPVITATQMLESMIKNPRPTRAESTDVANAVLD 341 (513)
T ss_pred HHHHHHHHhCCCEEEechhHHHHhhCCCCchHHHHHHHHHHHh
Confidence 448999999999998621111 12458888999999988865
No 55
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=62.89 E-value=24 Score=27.28 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=19.2
Q ss_pred hhHhHHHHHHCCCeEEEeeecC
Q 048651 61 EIIDIKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSlGG~ 82 (134)
+.+-|+.|+++|.+|+|.+=..
T Consensus 64 ld~~v~~a~~~gi~vild~h~~ 85 (281)
T PF00150_consen 64 LDRIVDAAQAYGIYVILDLHNA 85 (281)
T ss_dssp HHHHHHHHHHTT-EEEEEEEES
T ss_pred HHHHHHHHHhCCCeEEEEeccC
Confidence 7888999999999999999774
No 56
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=62.79 E-value=7.5 Score=30.18 Aligned_cols=28 Identities=11% Similarity=0.144 Sum_probs=21.7
Q ss_pred CccEEEe------eeCCCchhHhHHHHHHCCCeE
Q 048651 48 NYDFVNL------AFCPPLEIIDIKSCQAKGVKV 75 (134)
Q Consensus 48 ~ydiV~l------aF~~P~~~~dI~~CQ~~GkkV 75 (134)
.++.|+| .+.||.+.+.++.|++.|++|
T Consensus 22 g~~fviiKateG~~~~D~~~~~n~~~A~~aGl~~ 55 (199)
T cd06412 22 GARFAYVKATEGTSYTNPRFSSQYNGAYNAGLIR 55 (199)
T ss_pred CCeEEEEEEecCCCccChhHHHHHHHHHHcCCce
Confidence 4555544 355899999999999999865
No 57
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=62.62 E-value=12 Score=28.76 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=22.7
Q ss_pred CCccEEEe------eeCCCchhHhHHHHHHCCCeE
Q 048651 47 SNYDFVNL------AFCPPLEIIDIKSCQAKGVKV 75 (134)
Q Consensus 47 ~~ydiV~l------aF~~P~~~~dI~~CQ~~GkkV 75 (134)
.+++.|+| .+.||.+.+.|+.||+.|.+|
T Consensus 23 ~gi~fviiKateG~~~~D~~~~~~~~~a~~~Gl~v 57 (191)
T cd06413 23 QGVSFAYIKATEGGDHVDKRFAENWRGARAAGLPR 57 (191)
T ss_pred CCCcEEEEEEcCCCCccCHHHHHHHHHHHHcCCce
Confidence 35666554 355899999999999999875
No 58
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=62.47 E-value=19 Score=27.05 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=33.1
Q ss_pred CCccEEEee------eCCCchhHhHHHHHHCCCeEEEeeecCCcccccCCH-HHHHHHHHHHHHhh
Q 048651 47 SNYDFVNLA------FCPPLEIIDIKSCQAKGVKVMLSIEGGAGNYYLSFS-EDARQVADYLWNNF 105 (134)
Q Consensus 47 ~~ydiV~la------F~~P~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~-~~A~~fA~~Lw~~f 105 (134)
.+++.|+|- +.||.+.+.|+.|++.|++| |.|.+.+. .+|++=|++..+..
T Consensus 20 ~g~~fviik~t~G~~~~D~~~~~~~~~a~~aGl~~--------G~Yhy~~~~~~a~~qa~~fi~~~ 77 (186)
T cd00599 20 AGIDFVFIKATEGTTYVDPKFATNRARARAAGLLV--------GAYHFARPCANAEAQADNFVNTV 77 (186)
T ss_pred CCCcEEEEEEeCCCCccChHHHHHHHHHHHCCCce--------EEEEEecCCCCHHHHHHHHHHHc
Confidence 467766652 44888999999999999764 34444333 44555556666544
No 59
>PLN02522 ATP citrate (pro-S)-lyase
Probab=62.11 E-value=17 Score=33.98 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=44.1
Q ss_pred cCCCCCceEEEccCCCCC----CchhhhhcCC-CccEEEeeeCCCchhHh--HHHHHHCCCeEEEeeecC
Q 048651 20 TGDDASGITIYWVQNGIQ----STFMETCTTS-NYDFVNLAFCPPLEIID--IKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 20 ~~~~~~~i~~YWGq~~~~----~~L~~~C~~~-~ydiV~laF~~P~~~~d--I~~CQ~~GkkVlLSlGG~ 82 (134)
.++..+.--.||||.... .+.++.+... +.|+.++ |+.|.+..| ++.|-++|.|.++-|-..
T Consensus 45 ~~~~~~~~~~~~g~~~~~iPVf~tv~eA~~~~~~~~~~vi-fvp~~~a~da~lEa~~a~GIk~~VIiteG 113 (608)
T PLN02522 45 NPGSEGFQKLFFGQEEIAIPVHGSIEAACKAHPTADVFIN-FASFRSAAASSMEALKQPTIRVVAIIAEG 113 (608)
T ss_pred cCCCCcceeEecCCEeeCccccchHHHHHHhCCCCcEEEE-eCChHHhHHHHHHHHhhCCCCEEEEECCC
Confidence 345566678899997642 5788888654 7888776 887765444 889999998877776443
No 60
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=61.70 E-value=11 Score=27.90 Aligned_cols=56 Identities=9% Similarity=-0.015 Sum_probs=37.7
Q ss_pred EEEccCCCCCCchhhhhcCCCccEEEeeeCCC----chhHhHHHHHHCCC-eEEEeeecCC
Q 048651 28 TIYWVQNGIQSTFMETCTTSNYDFVNLAFCPP----LEIIDIKSCQAKGV-KVMLSIEGGA 83 (134)
Q Consensus 28 ~~YWGq~~~~~~L~~~C~~~~ydiV~laF~~P----~~~~dI~~CQ~~Gk-kVlLSlGG~~ 83 (134)
++|=|-.......-+.....+.|+|.||-++. .+.+-++.++++|. .|.+=+||..
T Consensus 33 Vi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~ 93 (132)
T TIGR00640 33 VDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVI 93 (132)
T ss_pred EEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 45555443323444444567999999999963 37788888998876 5556668864
No 61
>KOG3314 consensus Ku70-binding protein [Replication, recombination and repair]
Probab=58.26 E-value=15 Score=29.63 Aligned_cols=39 Identities=18% Similarity=0.509 Sum_probs=30.8
Q ss_pred CeEEEeeecCCcccccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCc
Q 048651 73 VKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNA 118 (134)
Q Consensus 73 kkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~ 118 (134)
..+++|+-|... - |.+.|++.++.+|+.-. ...|||+.+
T Consensus 155 rRatiSv~gnpn---c-Ske~Akk~veeV~dSCf---nD~rPFdri 193 (194)
T KOG3314|consen 155 RRATISVRGNPN---C-SKEAAKKAVEEVWDSCF---NDTRPFDRI 193 (194)
T ss_pred HhheeeeccCCC---c-cHHHHHHHHHHHHHHHh---ccCCCcccC
Confidence 457889988754 2 89999999999999642 667999864
No 62
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=57.97 E-value=11 Score=26.52 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=25.6
Q ss_pred hhhhhcCCCccEEEeeeCCCchhHhHHHHHHCCCeEEEee
Q 048651 40 FMETCTTSNYDFVNLAFCPPLEIIDIKSCQAKGVKVMLSI 79 (134)
Q Consensus 40 L~~~C~~~~ydiV~laF~~P~~~~dI~~CQ~~GkkVlLSl 79 (134)
+...+.+..+|.|+|.--|-.|..-++.+|++|++|.+-.
T Consensus 87 ~~~~~~~~~~d~ivLvSgD~Df~~~v~~l~~~g~~V~v~~ 126 (146)
T PF01936_consen 87 ILELAYENPPDTIVLVSGDSDFAPLVRKLRERGKRVIVVG 126 (146)
T ss_dssp HHHHG--GG-SEEEEE---GGGHHHHHHHHHH--EEEEEE
T ss_pred HHHHhhccCCCEEEEEECcHHHHHHHHHHHHcCCEEEEEE
Confidence 4444545566998888888889999999999999887765
No 63
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=55.95 E-value=19 Score=28.30 Aligned_cols=40 Identities=18% Similarity=0.109 Sum_probs=31.4
Q ss_pred hhcCCCccEEEeeeCCC----chhHhHHHHHHCCCeEEEeeecC
Q 048651 43 TCTTSNYDFVNLAFCPP----LEIIDIKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 43 ~C~~~~ydiV~laF~~P----~~~~dI~~CQ~~GkkVlLSlGG~ 82 (134)
.+...+.|||++||-.+ .+.+.++.++++|+.|+.|-|=.
T Consensus 120 ~a~~~~~~iin~S~g~~~~~~~~~~~~~~a~~~gilvV~aaGN~ 163 (260)
T cd07484 120 YAADKGAKVINLSLGGGLGSTALQEAINYAWNKGVVVVAAAGNE 163 (260)
T ss_pred HHHHCCCeEEEecCCCCCCCHHHHHHHHHHHHCCCEEEEeCCCC
Confidence 44566789999999754 37888899999999988887644
No 64
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=55.89 E-value=13 Score=33.97 Aligned_cols=58 Identities=22% Similarity=0.271 Sum_probs=46.4
Q ss_pred HHHHHHCCCeEEEee------ecCCcccccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCCC
Q 048651 65 IKSCQAKGVKVMLSI------EGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGTI 132 (134)
Q Consensus 65 I~~CQ~~GkkVlLSl------GG~~g~~~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~~ 132 (134)
-.+++++|+|||=.+ |++...--|.+++.++..|+.|...= |-|| +||.=++||+..+
T Consensus 117 tn~AHrHGV~vlGTFItEw~eg~~~c~~~La~~es~~~~~e~L~~l~-------~~fg---FdGWLiNiEn~i~ 180 (526)
T KOG2331|consen 117 TNTAHRHGVKVLGTFITEWDEGKATCKEFLATEESVEMTVERLVELA-------RFFG---FDGWLINIENKID 180 (526)
T ss_pred cchhhhcCceeeeeEEEEeccchhHHHHHHccchhHHHHHHHHHHHH-------HHhC---CceEEEEeeeccC
Confidence 356789999998765 66666667899999999999998764 5567 9999999998654
No 65
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=55.56 E-value=21 Score=27.23 Aligned_cols=40 Identities=23% Similarity=0.281 Sum_probs=30.7
Q ss_pred hhhcCCCccEEEeeeCCC----chhHhHHHHHHCCCeEEEeeec
Q 048651 42 ETCTTSNYDFVNLAFCPP----LEIIDIKSCQAKGVKVMLSIEG 81 (134)
Q Consensus 42 ~~C~~~~ydiV~laF~~P----~~~~dI~~CQ~~GkkVlLSlGG 81 (134)
+.|...+.+||++||-.+ .+.+.++.++++|+-|+.|-|=
T Consensus 90 ~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~a~~~giliv~aaGN 133 (229)
T cd07477 90 EWAIENGMDIINMSLGGPSDSPALREAIKKAYAAGILVVAAAGN 133 (229)
T ss_pred HHHHHCCCCEEEECCccCCCCHHHHHHHHHHHHCCCEEEEecCC
Confidence 345567899999999743 3777889999999887777663
No 66
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=55.52 E-value=21 Score=28.59 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=31.4
Q ss_pred hhcCCCccEEEeeeCCCc-----hhHhHHHHHHCCCeEEEeeecC
Q 048651 43 TCTTSNYDFVNLAFCPPL-----EIIDIKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 43 ~C~~~~ydiV~laF~~P~-----~~~dI~~CQ~~GkkVlLSlGG~ 82 (134)
++.+.+.|||++||-.|. +.+.|.++.++|+.|+.|-|=.
T Consensus 94 ~a~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~gi~vV~aaGN~ 138 (255)
T cd07479 94 YAILTKIDVLNLSIGGPDFMDKPFVDKVWELTANNIIMVSAIGND 138 (255)
T ss_pred hhhhcCCCEEEeeccCCCCCCcHHHHHHHHHHHCCcEEEEEcCCC
Confidence 445678999999998432 5667888999999999998754
No 67
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=54.92 E-value=8.3 Score=27.58 Aligned_cols=12 Identities=33% Similarity=0.285 Sum_probs=7.1
Q ss_pred CCCcchhHHHHH
Q 048651 1 MALKSSISVLLF 12 (134)
Q Consensus 1 m~~~~~~~~~~~ 12 (134)
|++|....|.++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 887765555333
No 68
>PRK06739 pyruvate kinase; Validated
Probab=54.20 E-value=39 Score=29.44 Aligned_cols=42 Identities=10% Similarity=0.113 Sum_probs=31.5
Q ss_pred hHhHHHHHHCCCeEEEeeecCC--cccccCCHHHHHHHHHHHHH
Q 048651 62 IIDIKSCQAKGVKVMLSIEGGA--GNYYLSFSEDARQVADYLWN 103 (134)
Q Consensus 62 ~~dI~~CQ~~GkkVlLSlGG~~--g~~~l~s~~~A~~fA~~Lw~ 103 (134)
+.=|+.|++.||.|+++-==-. -....+|.+++.++|+-+.+
T Consensus 254 k~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~d 297 (352)
T PRK06739 254 KMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLD 297 (352)
T ss_pred HHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHHHHHHHHHHh
Confidence 3448999999999998632211 23568999999999988876
No 69
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=54.08 E-value=25 Score=26.37 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=44.2
Q ss_pred eEEEccCCCCCCchhhhhcCCCccEEEeeeCCC----chhHhHHHHHHCCC-eEEEeeecCC
Q 048651 27 ITIYWVQNGIQSTFMETCTTSNYDFVNLAFCPP----LEIIDIKSCQAKGV-KVMLSIEGGA 83 (134)
Q Consensus 27 i~~YWGq~~~~~~L~~~C~~~~ydiV~laF~~P----~~~~dI~~CQ~~Gk-kVlLSlGG~~ 83 (134)
=++|-|-+-....+-+.+...+.|+|-+|-+.. .+++-++.++++|. .|.+=+||..
T Consensus 29 eVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~ 90 (128)
T cd02072 29 NVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYVGGNL 90 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEEEECCC
Confidence 367777655555677777788999999999953 47788889999986 7888889874
No 70
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=53.98 E-value=44 Score=29.60 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=27.9
Q ss_pred CCccEEEeeeCCCchhHhHHH--HHHCCCeEEEe-----eecCCccccc
Q 048651 47 SNYDFVNLAFCPPLEIIDIKS--CQAKGVKVMLS-----IEGGAGNYYL 88 (134)
Q Consensus 47 ~~ydiV~laF~~P~~~~dI~~--CQ~~GkkVlLS-----lGG~~g~~~l 88 (134)
..||||+++ ..+.+-|.+ +-.+|||||+= +||...+.++
T Consensus 3 ~~~DViViG---tGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l 48 (443)
T PTZ00363 3 ETYDVIVCG---TGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNL 48 (443)
T ss_pred CcceEEEEC---CChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccH
Confidence 469999994 346665544 34689999995 8998776654
No 71
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=53.80 E-value=28 Score=23.94 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=38.6
Q ss_pred eEEEccCCCCCCchhhhhcCCCccEEEeeeCCCc----hhHhHHHHHHCCCeEEEeeecCCcc
Q 048651 27 ITIYWVQNGIQSTFMETCTTSNYDFVNLAFCPPL----EIIDIKSCQAKGVKVMLSIEGGAGN 85 (134)
Q Consensus 27 i~~YWGq~~~~~~L~~~C~~~~ydiV~laF~~P~----~~~dI~~CQ~~GkkVlLSlGG~~g~ 85 (134)
-+.|-|.+.....+.+.+...++|+|-+|+.... +..-++..|..+-++.+=+||...+
T Consensus 29 ~v~~l~~~~~~~~~~~~i~~~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvGG~~~t 91 (125)
T cd02065 29 EVIDLGVDVPPEEIVEAAKEEDADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVGGAHPT 91 (125)
T ss_pred EEEEcCCCCCHHHHHHHHHHcCCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEeCCcCC
Confidence 3556565555556777777889999999999554 2223333344443788889997543
No 72
>PRK10949 protease 4; Provisional
Probab=53.56 E-value=16 Score=33.98 Aligned_cols=55 Identities=18% Similarity=0.313 Sum_probs=42.2
Q ss_pred chhhhhcCCCccEEEeeeCCCc--------hhHhHHHHHHCCCeEEEeeecC--CcccccCCHHH
Q 048651 39 TFMETCTTSNYDFVNLAFCPPL--------EIIDIKSCQAKGVKVMLSIEGG--AGNYYLSFSED 93 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~~P~--------~~~dI~~CQ~~GkkVlLSlGG~--~g~~~l~s~~~ 93 (134)
.|+..-+++++.-|+|--=.|. +.+.|+..+++||+|+.|+|+- .|.|.+.+.++
T Consensus 355 ~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad 419 (618)
T PRK10949 355 QIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPAN 419 (618)
T ss_pred HHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcC
Confidence 4677667788887777444453 7788999999999999999975 56788887754
No 73
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=52.93 E-value=17 Score=30.87 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=19.8
Q ss_pred ccEEEee-eCCCc--------------hhHhHHHHHHCCCeEEEe
Q 048651 49 YDFVNLA-FCPPL--------------EIIDIKSCQAKGVKVMLS 78 (134)
Q Consensus 49 ydiV~la-F~~P~--------------~~~dI~~CQ~~GkkVlLS 78 (134)
-|+|++| |+||. +++|++.|++.|+-++..
T Consensus 48 ~d~vVVSIFVNP~QF~~~eD~~~YPR~~e~D~~ll~~~gvD~vF~ 92 (280)
T PF02569_consen 48 NDVVVVSIFVNPTQFGPNEDFDKYPRTLERDLELLEKAGVDAVFA 92 (280)
T ss_dssp SSEEEEEE---GGGSSTTSHTTTS---HHHHHHHHHHTT-SEEE-
T ss_pred CCEEEEEECcCcccCCCcchhhhCCCChHHHHHHHhccCCCEEEc
Confidence 4666665 77762 899999999999987654
No 74
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=52.15 E-value=84 Score=26.54 Aligned_cols=77 Identities=21% Similarity=0.246 Sum_probs=47.6
Q ss_pred CCCccEEEeeeC-----CCc--------hhHhHHHHHHCCCeEEEeeecCC------------------c---------c
Q 048651 46 TSNYDFVNLAFC-----PPL--------EIIDIKSCQAKGVKVMLSIEGGA------------------G---------N 85 (134)
Q Consensus 46 ~~~ydiV~laF~-----~P~--------~~~dI~~CQ~~GkkVlLSlGG~~------------------g---------~ 85 (134)
..++|+|.|+.. .|. +-.-|+.|+++|+||+|.+.... | .
T Consensus 21 ~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~ 100 (374)
T PF02449_consen 21 EAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGRRRGFGSRQH 100 (374)
T ss_dssp HHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTSBEECCCSTT
T ss_pred HcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCCcCccCCccc
Confidence 347899988654 453 77789999999999999985431 1 1
Q ss_pred cccCC---HHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCC
Q 048651 86 YYLSF---SEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGT 131 (134)
Q Consensus 86 ~~l~s---~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~ 131 (134)
+.+.+ .+.+++++..|...|. ++-.|-|+++|.|.+.
T Consensus 101 ~~~~~p~yr~~~~~~~~~l~~~y~---------~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 101 YCPNSPAYREYARRFIRALAERYG---------DHPAVIGWQIDNEPGY 140 (374)
T ss_dssp -HCCHHHHHHHHHHHHHHHHHHHT---------TTTTEEEEEECCSTTC
T ss_pred cchhHHHHHHHHHHHHHHHHhhcc---------ccceEEEEEeccccCc
Confidence 22333 3345666666666663 2234789999988654
No 75
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=51.84 E-value=54 Score=26.44 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=34.8
Q ss_pred hhHhHHHHHH--CCCeEEEeeecCCcccccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCC
Q 048651 61 EIIDIKSCQA--KGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEG 129 (134)
Q Consensus 61 ~~~dI~~CQ~--~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~ 129 (134)
+.++|+..++ .++.|++||+|. +.++..+.|+.+++. | .|++++++-.
T Consensus 85 ~~~~i~~~~~~~~~~pvi~si~g~-------~~~~~~~~a~~~~~~-----------G---~d~ielN~~c 134 (289)
T cd02810 85 WLQDIAKAKKEFPGQPLIASVGGS-------SKEDYVELARKIERA-----------G---AKALELNLSC 134 (289)
T ss_pred HHHHHHHHHhccCCCeEEEEeccC-------CHHHHHHHHHHHHHh-----------C---CCEEEEEcCC
Confidence 5567776665 489999999997 456777778777652 2 7888887753
No 76
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=51.31 E-value=22 Score=24.47 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=39.3
Q ss_pred EEccCCCCCCchhhhhcCCCccEEEeee-CCCch---hHhHHHHHHCCCeEEEeeecCCc
Q 048651 29 IYWVQNGIQSTFMETCTTSNYDFVNLAF-CPPLE---IIDIKSCQAKGVKVMLSIEGGAG 84 (134)
Q Consensus 29 ~YWGq~~~~~~L~~~C~~~~ydiV~laF-~~P~~---~~dI~~CQ~~GkkVlLSlGG~~g 84 (134)
.+.+.+.....+.+.....++|+|-+|. ..+++ .+=++..+++...+.+=+||...
T Consensus 32 ~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~ 91 (121)
T PF02310_consen 32 DILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHA 91 (121)
T ss_dssp EEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSS
T ss_pred EEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCch
Confidence 3556555556677777777999999999 56653 34455566677788888999864
No 77
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=51.23 E-value=31 Score=26.47 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=31.8
Q ss_pred hhcCCCccEEEeeeCC------CchhHhHHHHHHCCCeEEEeeecCC
Q 048651 43 TCTTSNYDFVNLAFCP------PLEIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 43 ~C~~~~ydiV~laF~~------P~~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
++.+.++|||++||-. +.+.+-++++.++|+-|+.|-|...
T Consensus 86 ~a~~~~v~Vin~S~G~~~~~~~~~~~~~~~~a~~~g~l~V~aagN~~ 132 (222)
T cd07492 86 ACVENDIRIVNLSLGGPGDRDFPLLKELLEYAYKAGGIIVAAAPNNN 132 (222)
T ss_pred HHHHCCCCEEEeCCCCCCCCcCHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 4456689999999983 2367788889999999998877653
No 78
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=50.74 E-value=92 Score=26.02 Aligned_cols=62 Identities=15% Similarity=0.112 Sum_probs=39.5
Q ss_pred CchhHhHHHHHHCCCeEEEee----e----------------------c----------CCcccccCCHHHHHHHHHHHH
Q 048651 59 PLEIIDIKSCQAKGVKVMLSI----E----------------------G----------GAGNYYLSFSEDARQVADYLW 102 (134)
Q Consensus 59 P~~~~dI~~CQ~~GkkVlLSl----G----------------------G----------~~g~~~l~s~~~A~~fA~~Lw 102 (134)
|..++=|+..+++|+||++.+ . | ...-+.+++++..+.+.+.+-
T Consensus 64 Pdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~ 143 (317)
T cd06600 64 PEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFS 143 (317)
T ss_pred CCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHH
Confidence 345666777788888888764 1 1 111246677777777766665
Q ss_pred HhhCCCCCCCcCCCCcccceeeeecCCC
Q 048651 103 NNFLGGQSSSRPLGNAVLDGIDFGIEGG 130 (134)
Q Consensus 103 ~~f~~g~s~~RPfg~~~lDG~D~DiE~g 130 (134)
..+ .+..+||+=+|.-.+
T Consensus 144 ~~~----------~~~gvdg~w~D~~Ep 161 (317)
T cd06600 144 EWL----------NSQGVDGIWLDMNEP 161 (317)
T ss_pred HHh----------hcCCCceEEeeCCCC
Confidence 433 467799998886543
No 79
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=50.34 E-value=21 Score=28.96 Aligned_cols=40 Identities=13% Similarity=0.205 Sum_probs=30.7
Q ss_pred hhcCCCccEEEeeeCC--------CchhHhHHHHHHCCCeEEEeeecC
Q 048651 43 TCTTSNYDFVNLAFCP--------PLEIIDIKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 43 ~C~~~~ydiV~laF~~--------P~~~~dI~~CQ~~GkkVlLSlGG~ 82 (134)
+|.+.+.|||++||-. +.+.+-+++..++|+-|+.|-|=.
T Consensus 101 ~a~~~g~~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~ 148 (267)
T cd07476 101 LALEQGAHIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNE 148 (267)
T ss_pred HHHHCCCCEEEecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCC
Confidence 4556789999999973 237777888889999998887543
No 80
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=50.04 E-value=6.7 Score=33.21 Aligned_cols=59 Identities=29% Similarity=0.224 Sum_probs=31.3
Q ss_pred hHHHHHHCCCeEEEee--ecCCc----ccccC-CHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCCCC
Q 048651 64 DIKSCQAKGVKVMLSI--EGGAG----NYYLS-FSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGGTI 132 (134)
Q Consensus 64 dI~~CQ~~GkkVlLSl--GG~~g----~~~l~-s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g~~ 132 (134)
=|.+++++|+|||=.| .+..+ ..-|. +++....+|+.|.++- ..+.+||.-+++|....
T Consensus 47 widaAHrnGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia----------~~yGFDGw~iN~E~~~~ 112 (311)
T PF03644_consen 47 WIDAAHRNGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIA----------KYYGFDGWLINIETPLS 112 (311)
T ss_dssp HHHHHHHTT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHH----------HHHT--EEEEEEEESST
T ss_pred hHHHHHhcCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHH----------HHcCCCceEEEecccCC
Confidence 4889999999997443 11111 12233 4444556677776654 34459999999998643
No 81
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=50.01 E-value=72 Score=27.35 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=41.7
Q ss_pred CchhHhHHHHHHCCCeEEEeeec-------------------------------------CCcccccCCHHHHHHHHHHH
Q 048651 59 PLEIIDIKSCQAKGVKVMLSIEG-------------------------------------GAGNYYLSFSEDARQVADYL 101 (134)
Q Consensus 59 P~~~~dI~~CQ~~GkkVlLSlGG-------------------------------------~~g~~~l~s~~~A~~fA~~L 101 (134)
|...+-|+..+++|+||++++== ..+-..+++.+..+.+.+.+
T Consensus 83 Pd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~ 162 (441)
T PF01055_consen 83 PDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQL 162 (441)
T ss_dssp TTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHH
T ss_pred cchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHH
Confidence 55788899999999999998611 11224577777666666777
Q ss_pred HHhhCCCCCCCcCCCCcccceeeeecCCCC
Q 048651 102 WNNFLGGQSSSRPLGNAVLDGIDFGIEGGT 131 (134)
Q Consensus 102 w~~f~~g~s~~RPfg~~~lDG~D~DiE~g~ 131 (134)
-..+ ..+.+||+=+|...+.
T Consensus 163 ~~~~----------~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 163 KELL----------DDYGVDGWWLDFGEPS 182 (441)
T ss_dssp HHHH----------TTST-SEEEEESTTTB
T ss_pred HHHH----------hccCCceEEeecCCcc
Confidence 6655 5567999999984443
No 82
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=49.30 E-value=33 Score=28.70 Aligned_cols=73 Identities=19% Similarity=0.301 Sum_probs=42.7
Q ss_pred CchhhhhcCCCccEEEeeeC--CCc----hhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHHHHHHH---hhCCC
Q 048651 38 STFMETCTTSNYDFVNLAFC--PPL----EIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWN---NFLGG 108 (134)
Q Consensus 38 ~~L~~~C~~~~ydiV~laF~--~P~----~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~---~f~~g 108 (134)
..++..|... |+|.+||. .+. +...=-.||++-- ++.++-..+-+..+|-+ .| .-
T Consensus 58 r~~rkI~~ld--~hV~mafaGl~aDArilinrArvecqShrl-------------t~edpvtveyitRyiA~~kQrY-Tq 121 (249)
T KOG0183|consen 58 RTVRKISMLD--DHVVMAFAGLTADARILINRARVECQSHRL-------------TLEDPVTVEYITRYIAGLKQRY-TQ 121 (249)
T ss_pred hhhhhheeec--ceeeEEecCCCccceeehhhHhHhhhhhhc-------------ccCCCcHHHHHHHHHHHhhhhh-hc
Confidence 3477777532 58999998 232 4444557887642 23333333334433332 22 11
Q ss_pred CCCCcCCC-Ccccceeeee
Q 048651 109 QSSSRPLG-NAVLDGIDFG 126 (134)
Q Consensus 109 ~s~~RPfg-~~~lDG~D~D 126 (134)
..+.|||| ...+-|||.|
T Consensus 122 s~grRPFGvs~Li~GfD~~ 140 (249)
T KOG0183|consen 122 SNGRRPFGVSTLIGGFDPD 140 (249)
T ss_pred cCCcccccceEEEEeeCCC
Confidence 24689999 6788999987
No 83
>PRK15447 putative protease; Provisional
Probab=48.97 E-value=20 Score=29.94 Aligned_cols=52 Identities=23% Similarity=0.268 Sum_probs=33.9
Q ss_pred eEEEccCCCCCCchhhhhcCCCccEEEee---------eCCCchhHhHHHHHHCCCeEEEee
Q 048651 27 ITIYWVQNGIQSTFMETCTTSNYDFVNLA---------FCPPLEIIDIKSCQAKGVKVMLSI 79 (134)
Q Consensus 27 i~~YWGq~~~~~~L~~~C~~~~ydiV~la---------F~~P~~~~dI~~CQ~~GkkVlLSl 79 (134)
+.-||= -++...+-..+.....|-|-++ |-...+.+.|+.|+++||||.+++
T Consensus 8 ~~~~~p-~~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~ 68 (301)
T PRK15447 8 VLYYWP-KETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLST 68 (301)
T ss_pred cccCCC-CCCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 344553 2333344444444458888776 333458899999999999999964
No 84
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=48.94 E-value=17 Score=27.10 Aligned_cols=19 Identities=16% Similarity=0.405 Sum_probs=17.3
Q ss_pred hhHhHHHHHHCCCeEEEee
Q 048651 61 EIIDIKSCQAKGVKVMLSI 79 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSl 79 (134)
|++.|+.|+++|.+|+.-+
T Consensus 46 lge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 46 LGEQVEACHERGIRVPAYF 64 (132)
T ss_pred HHHHHHHHHHCCCEEEEEE
Confidence 7899999999999999765
No 85
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=48.63 E-value=51 Score=26.91 Aligned_cols=46 Identities=20% Similarity=0.068 Sum_probs=34.8
Q ss_pred hhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCC
Q 048651 61 EIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEG 129 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~ 129 (134)
+.++|+.+.+ ..+|++|+||. |.++....|..+-+ + .|+||++.--
T Consensus 57 i~~e~~~~~~-~~~vivnv~~~-------~~ee~~~~a~~v~~-~--------------~d~IdiN~gC 102 (231)
T TIGR00736 57 IIEQIKKAES-RALVSVNVRFV-------DLEEAYDVLLTIAE-H--------------ADIIEINAHC 102 (231)
T ss_pred HHHHHHHHhh-cCCEEEEEecC-------CHHHHHHHHHHHhc-C--------------CCEEEEECCC
Confidence 7888999964 44999999985 46677777777643 1 7899998754
No 86
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=48.24 E-value=32 Score=23.47 Aligned_cols=57 Identities=18% Similarity=0.126 Sum_probs=38.5
Q ss_pred CchhhhhcCCCccEEEeeeCCCchhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHHHH
Q 048651 38 STFMETCTTSNYDFVNLAFCPPLEIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADY 100 (134)
Q Consensus 38 ~~L~~~C~~~~ydiV~laF~~P~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~ 100 (134)
.++.+..+..++|+|.|+=.+..-.+-++.|=++||-|++-= .--.+.++++++.+.
T Consensus 52 ~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EK------P~~~~~~~~~~l~~~ 108 (120)
T PF01408_consen 52 TDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEK------PLALTLEEAEELVEA 108 (120)
T ss_dssp SSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEES------SSSSSHHHHHHHHHH
T ss_pred hHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEc------CCcCCHHHHHHHHHH
Confidence 457777777899999998766556677888888888888631 112245555555543
No 87
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=48.20 E-value=22 Score=27.35 Aligned_cols=28 Identities=25% Similarity=0.502 Sum_probs=22.3
Q ss_pred CccEEEe------eeCCCchhHhHHHHHHCCCeE
Q 048651 48 NYDFVNL------AFCPPLEIIDIKSCQAKGVKV 75 (134)
Q Consensus 48 ~ydiV~l------aF~~P~~~~dI~~CQ~~GkkV 75 (134)
++++|+| .+.||.+.+.++.|++.|.+|
T Consensus 22 g~~fv~ikateg~~~~D~~f~~n~~~A~~aGl~~ 55 (196)
T cd06416 22 GYSFAIIRAYRSNGSFDPNSVTNIKNARAAGLST 55 (196)
T ss_pred CceEEEEEEEccCCccChHHHHHHHHHHHcCCcc
Confidence 5666554 234899999999999999997
No 88
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=47.86 E-value=87 Score=26.11 Aligned_cols=61 Identities=8% Similarity=-0.021 Sum_probs=38.3
Q ss_pred CchhHhHHHHHHCCCeEEEee-------------------------ec----------CCcccccCCHHHHHHHHHHHHH
Q 048651 59 PLEIIDIKSCQAKGVKVMLSI-------------------------EG----------GAGNYYLSFSEDARQVADYLWN 103 (134)
Q Consensus 59 P~~~~dI~~CQ~~GkkVlLSl-------------------------GG----------~~g~~~l~s~~~A~~fA~~Lw~ 103 (134)
|...+=|+..+++|.||++++ |+ ..+-+.|++++..+-+.+.+-.
T Consensus 73 Pdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~ 152 (317)
T cd06599 73 PDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKE 152 (317)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHH
Confidence 446677888888888888854 11 1123566777766666665544
Q ss_pred hhCCCCCCCcCCCCcccceeeeecCC
Q 048651 104 NFLGGQSSSRPLGNAVLDGIDFGIEG 129 (134)
Q Consensus 104 ~f~~g~s~~RPfg~~~lDG~D~DiE~ 129 (134)
.+ -+..+||+=+|...
T Consensus 153 ~~----------~~~Gvdg~w~D~~E 168 (317)
T cd06599 153 AL----------LDLGIDSTWNDNNE 168 (317)
T ss_pred HH----------hcCCCcEEEecCCC
Confidence 33 44568888777543
No 89
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=47.65 E-value=76 Score=26.60 Aligned_cols=33 Identities=9% Similarity=-0.066 Sum_probs=20.6
Q ss_pred cccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecC
Q 048651 86 YYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIE 128 (134)
Q Consensus 86 ~~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE 128 (134)
+.+++++.++-+.+.+-+.+ -+..|||+=+|.-
T Consensus 133 ~Dftnp~a~~ww~~~~~~~~----------~~~Gvdg~w~D~~ 165 (317)
T cd06594 133 LDLTNPAARDWFKQVIKEML----------LDLGLSGWMADFG 165 (317)
T ss_pred eecCCHHHHHHHHHHHHHHh----------hhcCCcEEEecCC
Confidence 55666666666666665543 4456888877754
No 90
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=47.42 E-value=37 Score=30.72 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=31.1
Q ss_pred hhHhHHHHHHCCCeEEEeeecCC--cccccCCHHHHHHHHHHHHH
Q 048651 61 EIIDIKSCQAKGVKVMLSIEGGA--GNYYLSFSEDARQVADYLWN 103 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSlGG~~--g~~~l~s~~~A~~fA~~Lw~ 103 (134)
.+.-|+.|+++||.|+.+-==-. -....+|.+++.++|+-+++
T Consensus 261 qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEvtDVanav~d 305 (480)
T cd00288 261 QKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEVSDVANAVLD 305 (480)
T ss_pred HHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHHHh
Confidence 44568899999999998521111 12458889999999988876
No 91
>PTZ00262 subtilisin-like protease; Provisional
Probab=47.41 E-value=21 Score=33.63 Aligned_cols=41 Identities=17% Similarity=0.260 Sum_probs=34.4
Q ss_pred hhhcCCCccEEEeeeCC----CchhHhHHHHHHCCCeEEEeeecC
Q 048651 42 ETCTTSNYDFVNLAFCP----PLEIIDIKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 42 ~~C~~~~ydiV~laF~~----P~~~~dI~~CQ~~GkkVlLSlGG~ 82 (134)
++|.+.+.+||++||-. +.+.+-|+++.++|+.|+.|-|=.
T Consensus 429 ~yA~~~GA~VINmSlG~~~~s~~l~~AV~~A~~kGILVVAAAGN~ 473 (639)
T PTZ00262 429 DYCISREAHMINGSFSFDEYSGIFNESVKYLEEKGILFVVSASNC 473 (639)
T ss_pred HHHHHCCCCEEEeccccCCccHHHHHHHHHHHHCCCEEEEeCCCC
Confidence 46777889999999983 337888999999999999998765
No 92
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=47.34 E-value=59 Score=26.58 Aligned_cols=46 Identities=22% Similarity=0.313 Sum_probs=29.6
Q ss_pred hhHhHHHHHH-CCCeEEEeeecCCcccccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcc-cceeeeec
Q 048651 61 EIIDIKSCQA-KGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAV-LDGIDFGI 127 (134)
Q Consensus 61 ~~~dI~~CQ~-~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~-lDG~D~Di 127 (134)
..++|+..++ .++.|++||+|.. .++-.+.|..+ .++. +|+++|++
T Consensus 79 ~~~~~~~~~~~~~~p~i~si~g~~-------~~~~~~~a~~~--------------~~aG~~D~iElN~ 126 (301)
T PRK07259 79 FIEEELPWLEEFDTPIIANVAGST-------EEEYAEVAEKL--------------SKAPNVDAIELNI 126 (301)
T ss_pred HHHHHHHHHhccCCcEEEEeccCC-------HHHHHHHHHHH--------------hccCCcCEEEEEC
Confidence 4455665553 4889999999852 44444444433 3445 89999977
No 93
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=47.34 E-value=31 Score=27.04 Aligned_cols=51 Identities=24% Similarity=0.314 Sum_probs=34.3
Q ss_pred CCccEEEee------eCCCchhHhHHHHHHCCCeEEEeeecCCccccc-CCHHHHHHHHHHHHHhh
Q 048651 47 SNYDFVNLA------FCPPLEIIDIKSCQAKGVKVMLSIEGGAGNYYL-SFSEDARQVADYLWNNF 105 (134)
Q Consensus 47 ~~ydiV~la------F~~P~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l-~s~~~A~~fA~~Lw~~f 105 (134)
..+++|+|= |.||.+.+.++.|++.|++| |.|.+ ....++++=|++.++..
T Consensus 28 ~gi~Fv~iKATEG~~~~D~~f~~n~~~A~~~Gl~v--------GaYHf~~~~~~~~~QA~~F~~~v 85 (190)
T cd06419 28 NGISFVYLRATQGASYFDDNFLSNFSRAQGTGLSV--------GVIHTFSFSSTAAAQYRYFIRKV 85 (190)
T ss_pred CCCeEEEEEeecCCCccChhHHHHHHHHHHCCCCE--------EEEEEeecCCCHHHHHHHHHHhC
Confidence 356776653 55899999999999999996 66653 21112333367777764
No 94
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=47.07 E-value=69 Score=26.03 Aligned_cols=48 Identities=27% Similarity=0.288 Sum_probs=32.2
Q ss_pred hhHhHHHHHH-CCCeEEEeeecCCcccccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCC
Q 048651 61 EIIDIKSCQA-KGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEG 129 (134)
Q Consensus 61 ~~~dI~~CQ~-~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~ 129 (134)
..+.|+.+++ .+++|++||+|. +.++..+.|..+.+ +.+|++++++-.
T Consensus 77 ~~~~~~~~~~~~~~p~ivsi~g~-------~~~~~~~~a~~~~~--------------~G~d~iElN~~c 125 (296)
T cd04740 77 FLEELLPWLREFGTPVIASIAGS-------TVEEFVEVAEKLAD--------------AGADAIELNISC 125 (296)
T ss_pred HHHHHHHHhhcCCCcEEEEEecC-------CHHHHHHHHHHHHH--------------cCCCEEEEECCC
Confidence 4456666654 689999999985 34555556655543 348999988753
No 95
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=46.93 E-value=96 Score=23.82 Aligned_cols=46 Identities=22% Similarity=0.305 Sum_probs=33.6
Q ss_pred hhHhHHHHHHCCCeEEEeeecCCcccccCC----HHHHHHHHHHHHHhhC
Q 048651 61 EIIDIKSCQAKGVKVMLSIEGGAGNYYLSF----SEDARQVADYLWNNFL 106 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s----~~~A~~fA~~Lw~~f~ 106 (134)
++.-...+++.|.||.+.++=...-..=.+ .+.++.+|+.||..|+
T Consensus 67 l~~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~~~v~~el~~~yg 116 (166)
T PF14488_consen 67 LEMILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERNKQVADELWQRYG 116 (166)
T ss_pred HHHHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHHHHHHHHHHHHHc
Confidence 777889999999999999986532222122 2234689999999995
No 96
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=46.87 E-value=34 Score=26.46 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=24.4
Q ss_pred CccEEEeeeCCCc------hhHhHHHHHHCCCeEEEee
Q 048651 48 NYDFVNLAFCPPL------EIIDIKSCQAKGVKVMLSI 79 (134)
Q Consensus 48 ~ydiV~laF~~P~------~~~dI~~CQ~~GkkVlLSl 79 (134)
.|+++..-=++|. |++=|++|+++|.||+|-+
T Consensus 35 gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 35 GYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp TTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 4565554334664 8888999999999999986
No 97
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=46.34 E-value=77 Score=26.25 Aligned_cols=61 Identities=18% Similarity=0.097 Sum_probs=39.6
Q ss_pred CchhHhHHHHHHCCCeEEEee-------------------------e----------cCCcccccCCHHHHHHHHHHHHH
Q 048651 59 PLEIIDIKSCQAKGVKVMLSI-------------------------E----------GGAGNYYLSFSEDARQVADYLWN 103 (134)
Q Consensus 59 P~~~~dI~~CQ~~GkkVlLSl-------------------------G----------G~~g~~~l~s~~~A~~fA~~Lw~ 103 (134)
|..++=|+..+++|.|+++++ | |..+-+.+++++..+-+.+.+-.
T Consensus 70 Pdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~ 149 (303)
T cd06592 70 PDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKS 149 (303)
T ss_pred CCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHH
Confidence 457777888889999999875 1 11223556667666666555544
Q ss_pred hhCCCCCCCcCCCCcccceeeeecCC
Q 048651 104 NFLGGQSSSRPLGNAVLDGIDFGIEG 129 (134)
Q Consensus 104 ~f~~g~s~~RPfg~~~lDG~D~DiE~ 129 (134)
.+ .+..+||+=+|.-.
T Consensus 150 ~~----------~~~Gvdg~w~D~~E 165 (303)
T cd06592 150 LQ----------EKYGIDSFKFDAGE 165 (303)
T ss_pred HH----------HHhCCcEEEeCCCC
Confidence 33 45668998888654
No 98
>PLN02461 Probable pyruvate kinase
Probab=46.26 E-value=60 Score=29.78 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=30.4
Q ss_pred HhHHHHHHCCCeEEEeeecCC--cccccCCHHHHHHHHHHHHH
Q 048651 63 IDIKSCQAKGVKVMLSIEGGA--GNYYLSFSEDARQVADYLWN 103 (134)
Q Consensus 63 ~dI~~CQ~~GkkVlLSlGG~~--g~~~l~s~~~A~~fA~~Lw~ 103 (134)
.=|+.|.+.||.|+.+-==-. -....+|.+++.++|+-+.+
T Consensus 283 ~II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~d 325 (511)
T PLN02461 283 MMIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLD 325 (511)
T ss_pred HHHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHh
Confidence 448999999999998622111 13458899999999988765
No 99
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=45.92 E-value=25 Score=29.26 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=15.5
Q ss_pred hHhHHHHHHCCCeEEEee
Q 048651 62 IIDIKSCQAKGVKVMLSI 79 (134)
Q Consensus 62 ~~dI~~CQ~~GkkVlLSl 79 (134)
..||+.|+++|+|++.--
T Consensus 7 a~di~~~~~~g~~~~~i~ 24 (233)
T PRK15457 7 ANDIREAHARGEQAMSVV 24 (233)
T ss_pred HHHHHHHHhcCCeEEEEe
Confidence 589999999999999444
No 100
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=45.89 E-value=44 Score=26.78 Aligned_cols=38 Identities=26% Similarity=0.311 Sum_probs=29.2
Q ss_pred hhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHHHHHHHhh
Q 048651 61 EIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNF 105 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f 105 (134)
....|..|=.+|+|||+. |.+| |..+|+.||..|.+-|
T Consensus 30 aa~~i~~~l~~G~Kvl~c--GNGg-----SaadAqHfaael~gRf 67 (176)
T COG0279 30 AAQLLVQSLLNGNKVLAC--GNGG-----SAADAQHFAAELTGRF 67 (176)
T ss_pred HHHHHHHHHHcCCEEEEE--CCCc-----chhhHHHHHHHHhhHH
Confidence 345577788899999976 2222 5679999999999988
No 101
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=44.48 E-value=99 Score=22.81 Aligned_cols=80 Identities=13% Similarity=0.018 Sum_probs=50.4
Q ss_pred CCceEEEccCCCC--CCchhhhhcCCCccEEEeeeCCCchhHhHHHHHHCCCeEEEeeecCC----cccccCCHHHHHHH
Q 048651 24 ASGITIYWVQNGI--QSTFMETCTTSNYDFVNLAFCPPLEIIDIKSCQAKGVKVMLSIEGGA----GNYYLSFSEDARQV 97 (134)
Q Consensus 24 ~~~i~~YWGq~~~--~~~L~~~C~~~~ydiV~laF~~P~~~~dI~~CQ~~GkkVlLSlGG~~----g~~~l~s~~~A~~f 97 (134)
.-++.+++.+... +..+.....+.++|.|++.-.++.-.. ++.++.+|++|+.--.... ........+.++..
T Consensus 29 g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~-~~~~~~~~ipvv~~~~~~~~~~~~~v~~d~~~~g~~~ 107 (264)
T cd06267 29 GYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDEL-LEELAALGIPVVLVDRPLDGLGVDSVGIDNRAGAYLA 107 (264)
T ss_pred CCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH-HHHHHHcCCCEEEecccccCCCCCEEeeccHHHHHHH
Confidence 4567777775432 223333345668999988666655434 8999999999876433221 23445556777777
Q ss_pred HHHHHHh
Q 048651 98 ADYLWNN 104 (134)
Q Consensus 98 A~~Lw~~ 104 (134)
++++-+.
T Consensus 108 ~~~l~~~ 114 (264)
T cd06267 108 VEHLIEL 114 (264)
T ss_pred HHHHHHC
Confidence 7888764
No 102
>PLN02762 pyruvate kinase complex alpha subunit
Probab=44.44 E-value=36 Score=31.17 Aligned_cols=42 Identities=10% Similarity=0.125 Sum_probs=30.3
Q ss_pred hHhHHHHHHCCCeEEEeeecCCc--ccccCCHHHHHHHHHHHHH
Q 048651 62 IIDIKSCQAKGVKVMLSIEGGAG--NYYLSFSEDARQVADYLWN 103 (134)
Q Consensus 62 ~~dI~~CQ~~GkkVlLSlGG~~g--~~~l~s~~~A~~fA~~Lw~ 103 (134)
+.=|+.|...||.|+.+-==-.. ....+|.+++.++||-+.+
T Consensus 293 K~II~~c~~~gKPVIvATQmLeSMi~np~PTRAEvsDVaNAVlD 336 (509)
T PLN02762 293 EKIVRLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQ 336 (509)
T ss_pred HHHHHHHHHhCCCEEEECchHHhhhhCCCCCchhHHHHHHHHHh
Confidence 34489999999999986221111 2458888999999888876
No 103
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=43.76 E-value=53 Score=28.28 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=28.9
Q ss_pred chhhhhcCCCccEEEeeeCCCchhHhHHHHHHCCCeEEEee
Q 048651 39 TFMETCTTSNYDFVNLAFCPPLEIIDIKSCQAKGVKVMLSI 79 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~~P~~~~dI~~CQ~~GkkVlLSl 79 (134)
...+.|...++.+|.++|-+|. .++.+|+.|.||+.-.
T Consensus 73 ~~l~vi~e~~v~~V~~~~G~P~---~~~~lk~~Gi~v~~~v 110 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGGRPD---QARALEAIGISTYLHV 110 (320)
T ss_pred HHHHHHHhcCCcEEEEcCCChH---HHHHHHHCCCEEEEEe
Confidence 3556666678999999988884 4788888899988643
No 104
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=43.60 E-value=66 Score=22.96 Aligned_cols=53 Identities=23% Similarity=0.220 Sum_probs=33.8
Q ss_pred CchhhhhcCCCccEEEeeeCCCc-hhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHHHH
Q 048651 38 STFMETCTTSNYDFVNLAFCPPL-EIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADY 100 (134)
Q Consensus 38 ~~L~~~C~~~~ydiV~laF~~P~-~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~ 100 (134)
.+|.+. ....|++++ ++.|. ..+-++.|.++|.+.++=..| ...+++.+.|+.
T Consensus 47 ~sl~e~--p~~iDlavv-~~~~~~~~~~v~~~~~~g~~~v~~~~g-------~~~~~~~~~a~~ 100 (116)
T PF13380_consen 47 PSLAEI--PEPIDLAVV-CVPPDKVPEIVDEAAALGVKAVWLQPG-------AESEELIEAARE 100 (116)
T ss_dssp SSGGGC--SST-SEEEE--S-HHHHHHHHHHHHHHT-SEEEE-TT-------S--HHHHHHHHH
T ss_pred ccccCC--CCCCCEEEE-EcCHHHHHHHHHHHHHcCCCEEEEEcc-------hHHHHHHHHHHH
Confidence 467763 568999888 55554 677799999999998888877 445566666644
No 105
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=42.75 E-value=36 Score=23.59 Aligned_cols=31 Identities=3% Similarity=0.060 Sum_probs=22.2
Q ss_pred EEEeeeC--CCchhHhHHHHHHCCCeEEEeeec
Q 048651 51 FVNLAFC--PPLEIIDIKSCQAKGVKVMLSIEG 81 (134)
Q Consensus 51 iV~laF~--~P~~~~dI~~CQ~~GkkVlLSlGG 81 (134)
+|.+|+- .+.+.+-++.|+++|.+|+.=-+.
T Consensus 51 vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 51 VIAISNSGETDELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3445555 466889999999999997754443
No 106
>PLN02765 pyruvate kinase
Probab=42.55 E-value=47 Score=30.62 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=30.1
Q ss_pred hHhHHHHHHCCCeEEEeeecCC----cccccCCHHHHHHHHHHHHH
Q 048651 62 IIDIKSCQAKGVKVMLSIEGGA----GNYYLSFSEDARQVADYLWN 103 (134)
Q Consensus 62 ~~dI~~CQ~~GkkVlLSlGG~~----g~~~l~s~~~A~~fA~~Lw~ 103 (134)
+.=|+.|.+.||.|+ . -+- -....+|.+++.++|+-+++
T Consensus 296 K~iI~~c~~~gKPVI-~--TQmLeSMi~np~PTRAEvsDVaNAV~D 338 (526)
T PLN02765 296 KAALYKCNMAGKPAV-V--TRVVDSMTDNLRPTRAEATDVANAVLD 338 (526)
T ss_pred HHHHHHHHHhCCCeE-E--ehhhhHHhhCCCCChhhHHHHHHHHHh
Confidence 344889999999997 2 331 23568999999999988876
No 107
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=42.46 E-value=17 Score=29.83 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=38.9
Q ss_pred chhhhhcCCCccEEEeeeC----------C-Cc---------hhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHH
Q 048651 39 TFMETCTTSNYDFVNLAFC----------P-PL---------EIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVA 98 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~----------~-P~---------~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA 98 (134)
.|.++|..-+.+++.--|= + |. -..=+++|-+.||.|+||.|+.+ -++-+...
T Consensus 60 ~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~st-------l~EI~~Av 132 (241)
T PF03102_consen 60 ELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMST-------LEEIERAV 132 (241)
T ss_dssp HHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT---------HHHHHHHH
T ss_pred HHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCC-------HHHHHHHH
Confidence 5999999888777665554 1 21 12347888889999999999875 33455555
Q ss_pred HHHHHhhCCC-------CCCCcCCCCcccc
Q 048651 99 DYLWNNFLGG-------QSSSRPLGNAVLD 121 (134)
Q Consensus 99 ~~Lw~~f~~g-------~s~~RPfg~~~lD 121 (134)
+.+...-... ++-|-|+.++.|.
T Consensus 133 ~~~~~~~~~~l~llHC~s~YP~~~e~~NL~ 162 (241)
T PF03102_consen 133 EVLREAGNEDLVLLHCVSSYPTPPEDVNLR 162 (241)
T ss_dssp HHHHHHCT--EEEEEE-SSSS--GGG--TT
T ss_pred HHHHhcCCCCEEEEecCCCCCCChHHcChH
Confidence 5553322111 2346677766554
No 108
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=42.17 E-value=49 Score=24.82 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=32.3
Q ss_pred CCCceEEEccCCCCCCchhhhhcCCCccEEEeeeCCCc-hhHhHHHHHHCCCeEEEe
Q 048651 23 DASGITIYWVQNGIQSTFMETCTTSNYDFVNLAFCPPL-EIIDIKSCQAKGVKVMLS 78 (134)
Q Consensus 23 ~~~~i~~YWGq~~~~~~L~~~C~~~~ydiV~laF~~P~-~~~dI~~CQ~~GkkVlLS 78 (134)
...++-+|+|. ..|.+.+...++|+|+.+-+.-. +..-++ +-++||+|.|+
T Consensus 69 ~~~~~~v~~G~----~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~-Ai~~gk~iaLA 120 (129)
T PF02670_consen 69 KGPGIEVLSGP----EGLEELAEEPEVDIVVNAIVGFAGLKPTLA-AIKAGKDIALA 120 (129)
T ss_dssp TTSSSEEEESH----HHHHHHHTHTT-SEEEE--SSGGGHHHHHH-HHHTTSEEEE-
T ss_pred cCCCCEEEeCh----HHHHHHhcCCCCCEEEEeCcccchHHHHHH-HHHCCCeEEEe
Confidence 44578889984 45788887789999998776321 333333 34589999885
No 109
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=42.17 E-value=28 Score=28.40 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=30.9
Q ss_pred hhcCCCccEEEeeeCC---C---chhHhHHHHHHCCCeEEEeeecC
Q 048651 43 TCTTSNYDFVNLAFCP---P---LEIIDIKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 43 ~C~~~~ydiV~laF~~---P---~~~~dI~~CQ~~GkkVlLSlGG~ 82 (134)
++.+.+.+||++||-. + .+.+-|+.++++|+.|+.|-|=.
T Consensus 136 ~a~~~g~~IiN~S~G~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~ 181 (291)
T cd07483 136 YAVDNGAKVINMSFGKSFSPNKEWVDDAIKYAESKGVLIVHAAGND 181 (291)
T ss_pred HHHHCCCcEEEeCCCCCCCCccHHHHHHHHHHHhCCeEEEEeCCCC
Confidence 3556789999999872 2 26677899999999999988654
No 110
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=41.56 E-value=70 Score=32.05 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=17.3
Q ss_pred hhHhHHHHHHCCCeEEEee
Q 048651 61 EIIDIKSCQAKGVKVMLSI 79 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSl 79 (134)
|++=|++|+++|.+|+|=+
T Consensus 557 fK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 557 FKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHCCCEEEEec
Confidence 8888999999999999963
No 111
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=41.39 E-value=64 Score=27.43 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=37.2
Q ss_pred CCccEEEeeeC--CC-chhHhHHHHHHCCCeEEEeeecC-----------------CcccccCCHHHHHHHH
Q 048651 47 SNYDFVNLAFC--PP-LEIIDIKSCQAKGVKVMLSIEGG-----------------AGNYYLSFSEDARQVA 98 (134)
Q Consensus 47 ~~ydiV~laF~--~P-~~~~dI~~CQ~~GkkVlLSlGG~-----------------~g~~~l~s~~~A~~fA 98 (134)
.++|++.+++. .+ .+.+-++.|+++|+||.+.++.. .-.+-+.+.++++.+.
T Consensus 176 ~~~~~v~v~~~~~~~~~~~~~~~~A~~~g~~v~lD~s~~~~v~~~r~~l~~ll~~~~vDilf~Ne~Ea~~l~ 247 (367)
T PLN02379 176 KGSKWLVLRYGFYNLEVIEAAIRLAKQEGLSVSLDLASFEMVRNFRSPLLQLLESGKIDLCFANEDEARELL 247 (367)
T ss_pred hcCCEEEEEcccCCHHHHHHHHHHHHHcCCEEEEeccchhhhhhhhHHHHHHhhcCCccEEEcCHHHHHHHh
Confidence 35788888854 22 26677888999999999999752 1245677777777664
No 112
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=41.36 E-value=40 Score=28.53 Aligned_cols=41 Identities=24% Similarity=0.211 Sum_probs=28.7
Q ss_pred eeeCCCc-----hhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHHHHHHH
Q 048651 54 LAFCPPL-----EIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWN 103 (134)
Q Consensus 54 laF~~P~-----~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~ 103 (134)
+|-+||. +..=.+.||+.|++|+++ |..-+-|+++++.+..
T Consensus 175 vasLDp~~a~~Vm~~l~~in~~~g~Tvi~n---------LH~vdlA~~Y~~Riig 220 (258)
T COG3638 175 VASLDPESAKKVMDILKDINQEDGITVIVN---------LHQVDLAKKYADRIIG 220 (258)
T ss_pred ccccChhhHHHHHHHHHHHHHHcCCEEEEE---------echHHHHHHHHhhheE
Confidence 5666775 333356789999999997 5666667777766654
No 113
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=40.61 E-value=42 Score=27.62 Aligned_cols=57 Identities=9% Similarity=0.110 Sum_probs=37.8
Q ss_pred ceEEEccCCCCC---CchhhhhcCCCccEEEeeeCC--Cc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 26 GITIYWVQNGIQ---STFMETCTTSNYDFVNLAFCP--PL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 26 ~i~~YWGq~~~~---~~L~~~C~~~~ydiV~laF~~--P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
++.+-.+.+..+ .++.+..... +++....+.. |. +.+-+..+++.+..++++|||+.
T Consensus 25 ~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs 89 (332)
T cd07766 25 RALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGS 89 (332)
T ss_pred eEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCch
Confidence 343444654332 2455555554 6777776764 44 56777888889999999999985
No 114
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=40.48 E-value=50 Score=25.67 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=29.9
Q ss_pred hhcCCCccEEEeeeCCC-----chhHhHHHHHH-CCCeEEEeeec
Q 048651 43 TCTTSNYDFVNLAFCPP-----LEIIDIKSCQA-KGVKVMLSIEG 81 (134)
Q Consensus 43 ~C~~~~ydiV~laF~~P-----~~~~dI~~CQ~-~GkkVlLSlGG 81 (134)
+|.+.+.|||++||-.+ .+.+.++++++ +|+.|+.|-|=
T Consensus 93 ~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~g~lvV~aAGN 137 (254)
T cd07490 93 WAVEKDADVVSMSLGGTYYSEDPLEEAVEALSNQTGALFVVSAGN 137 (254)
T ss_pred HHHhCCCCEEEECCCcCCCCCcHHHHHHHHHHHcCCCEEEEeCCC
Confidence 45567899999999732 26777888886 69888888763
No 115
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=39.49 E-value=90 Score=25.16 Aligned_cols=52 Identities=19% Similarity=0.102 Sum_probs=36.3
Q ss_pred CchhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCCC
Q 048651 59 PLEIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEGG 130 (134)
Q Consensus 59 P~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~g 130 (134)
|..++=|+..+++|.||++.+==.. ++.+.+.+.+.+ .+..+||+=+|.-.+
T Consensus 66 pdp~~~i~~l~~~g~~~~~~~~P~v----------~~w~~~~~~~~~----------~~~Gvdg~w~D~~E~ 117 (265)
T cd06589 66 PNPKSMIDELHDNGVKLVLWIDPYI----------REWWAEVVKKLL----------VSLGVDGFWTDMGEP 117 (265)
T ss_pred CCHHHHHHHHHHCCCEEEEEeChhH----------HHHHHHHHHHhh----------ccCCCCEEeccCCCC
Confidence 4567889999999999999872221 556666665532 566788888886544
No 116
>PF12682 Flavodoxin_4: Flavodoxin; PDB: 3EDO_B 3KLB_A.
Probab=38.47 E-value=18 Score=27.42 Aligned_cols=31 Identities=23% Similarity=0.206 Sum_probs=23.4
Q ss_pred CCccEEEeeeCC------CchhHhHHHHHHCCCeEEE
Q 048651 47 SNYDFVNLAFCP------PLEIIDIKSCQAKGVKVML 77 (134)
Q Consensus 47 ~~ydiV~laF~~------P~~~~dI~~CQ~~GkkVlL 77 (134)
.+||+|+|+|.. |-+.+=++..+-+||+|..
T Consensus 72 ~~YD~I~lG~PvW~~~~~~pv~tFL~~~~~~gK~v~~ 108 (156)
T PF12682_consen 72 SDYDTIFLGTPVWWGTPPPPVRTFLEQYDFSGKTVIP 108 (156)
T ss_dssp GG-SEEEEEEEEETTEE-CHHHHHHHCTTTTTSEEEE
T ss_pred ccCCEEEEechHHcCCCCHHHHHHHHhcCCCCCcEEE
Confidence 589999999992 3377777777788999873
No 117
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=38.09 E-value=40 Score=30.77 Aligned_cols=30 Identities=30% Similarity=0.552 Sum_probs=23.4
Q ss_pred ccEEEee-eCCCc--------------hhHhHHHHHHCCCeEEEe
Q 048651 49 YDFVNLA-FCPPL--------------EIIDIKSCQAKGVKVMLS 78 (134)
Q Consensus 49 ydiV~la-F~~P~--------------~~~dI~~CQ~~GkkVlLS 78 (134)
-|+|++| |+||. +++|++.|.+.|+-++..
T Consensus 46 ~d~vVvSIFVNP~QF~~~eD~~~YPr~~~~D~~~l~~~gvd~vf~ 90 (512)
T PRK13477 46 NDVVLVSIFVNPLQFGPNEDLERYPRTLEADRELCESAGVDAIFA 90 (512)
T ss_pred CCEEEEEEccCcccCCCchhhhhCCCCHHHHHHHHHhcCCCEEEC
Confidence 4666665 77762 899999999999987764
No 118
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=38.04 E-value=47 Score=23.79 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=29.7
Q ss_pred chhhhhcCCCccEEEeeeC--C------C-----chhHhHHHHHHCCCeEEEe
Q 048651 39 TFMETCTTSNYDFVNLAFC--P------P-----LEIIDIKSCQAKGVKVMLS 78 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~--~------P-----~~~~dI~~CQ~~GkkVlLS 78 (134)
+|...+...++|+|+|.+- | + .+.+-|+.+++++.+|++-
T Consensus 55 ~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 55 RLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred HHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 4666666668899999877 1 1 1677788899989998874
No 119
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=37.73 E-value=55 Score=26.61 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=31.5
Q ss_pred hhhcCCCccEEEeeeCCC------chhHhHHHHHHCCCeEEEeeecC
Q 048651 42 ETCTTSNYDFVNLAFCPP------LEIIDIKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 42 ~~C~~~~ydiV~laF~~P------~~~~dI~~CQ~~GkkVlLSlGG~ 82 (134)
+.+...+.+||++|+-.+ .+.+.++.++++|+.|+.|-|=.
T Consensus 118 ~~a~~~~~~iIn~S~g~~~~~~~~~~~~~~~~~~~~gv~iv~aaGN~ 164 (312)
T cd07489 118 LRAYEDGADVITASLGGPSGWSEDPWAVVASRIVDAGVVVTIAAGND 164 (312)
T ss_pred HHHHhcCCCEEEeCCCcCCCCCCCHHHHHHHHHHHCCCEEEEECCCC
Confidence 345566899999998833 26677889999999888888754
No 120
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=37.58 E-value=38 Score=29.04 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=23.3
Q ss_pred ccEEEee-eCCCc--------------hhHhHHHHHHCCCeEEEe
Q 048651 49 YDFVNLA-FCPPL--------------EIIDIKSCQAKGVKVMLS 78 (134)
Q Consensus 49 ydiV~la-F~~P~--------------~~~dI~~CQ~~GkkVlLS 78 (134)
-|+|++| |+||. +..|++.|++.|+-++..
T Consensus 48 ~d~VVVSIFVNP~QFg~~EDl~~YPR~l~~D~~~le~~gvd~vF~ 92 (285)
T COG0414 48 NDVVVVSIFVNPLQFGPNEDLDRYPRTLERDLELLEKEGVDIVFA 92 (285)
T ss_pred CCeEEEEEEeChhhcCCchhhhhCCCCHHHHHHHHHhcCCcEEeC
Confidence 3554444 88762 899999999999998865
No 121
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=37.08 E-value=50 Score=26.06 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=31.3
Q ss_pred hhcCCCccEEEeeeCC-----C--------------chhHhHHHHHHCCCeEEEeeecCC
Q 048651 43 TCTTSNYDFVNLAFCP-----P--------------LEIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 43 ~C~~~~ydiV~laF~~-----P--------------~~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
.|...+.+||++||-- + .+.+-++.+.++|+.|+.|-|=..
T Consensus 99 ~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g 158 (261)
T cd07493 99 WADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEG 158 (261)
T ss_pred HHHHcCCCEEEeCCCcCCCCCcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCC
Confidence 4667789999999872 1 155668888899999988887654
No 122
>smart00642 Aamy Alpha-amylase domain.
Probab=36.98 E-value=51 Score=25.09 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=17.3
Q ss_pred hhHhHHHHHHCCCeEEEee
Q 048651 61 EIIDIKSCQAKGVKVMLSI 79 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSl 79 (134)
|.+=|++|+++|.+|++=+
T Consensus 72 ~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 72 FKELVDAAHARGIKVILDV 90 (166)
T ss_pred HHHHHHHHHHCCCEEEEEE
Confidence 8888999999999999865
No 123
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=36.86 E-value=57 Score=25.27 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=28.8
Q ss_pred CccEEEeeeCCC--------chhHhHHHHHHCCCeEEEeeecC
Q 048651 48 NYDFVNLAFCPP--------LEIIDIKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 48 ~ydiV~laF~~P--------~~~~dI~~CQ~~GkkVlLSlGG~ 82 (134)
+.+||++||-.+ .+.+.|+.++++|+.|+.|-|=.
T Consensus 106 ~~~Iin~S~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~ 148 (264)
T cd07487 106 NIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNS 148 (264)
T ss_pred CceEEEeccCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCC
Confidence 899999999932 16788999999999999887743
No 124
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=36.68 E-value=54 Score=26.09 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=31.7
Q ss_pred hhhcCCCccEEEeeeCC------CchhHhHHHHHHCCCeEEEeeecC
Q 048651 42 ETCTTSNYDFVNLAFCP------PLEIIDIKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 42 ~~C~~~~ydiV~laF~~------P~~~~dI~~CQ~~GkkVlLSlGG~ 82 (134)
+.|.+.+.+||++||-. ..+...++.+.++|+.|+.|-|=.
T Consensus 113 ~~a~~~~~~Iin~S~g~~~~~~~~~~~~~~~~~~~~gil~V~aAGN~ 159 (295)
T cd07474 113 EQAVDDGMDVINLSLGSSVNGPDDPDAIAINNAVKAGVVVVAAAGNS 159 (295)
T ss_pred HHHHHcCCCEEEeCCCCCCCCCCCHHHHHHHHHHhcCCEEEEECCCC
Confidence 34556689999999972 226777899999999998887753
No 125
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=36.67 E-value=72 Score=24.23 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=30.3
Q ss_pred cCCCccEEEeeeCCCchhHhHHHHHHC-CCeEEEeeecC
Q 048651 45 TTSNYDFVNLAFCPPLEIIDIKSCQAK-GVKVMLSIEGG 82 (134)
Q Consensus 45 ~~~~ydiV~laF~~P~~~~dI~~CQ~~-GkkVlLSlGG~ 82 (134)
+....|+|.++.-.|.-+.=+...+++ ...|++.+||.
T Consensus 96 ~~~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~~~vG~~ 134 (171)
T cd06533 96 NASGADILFVGLGAPKQELWIARHKDRLPVPVAIGVGGS 134 (171)
T ss_pred HHcCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEecee
Confidence 456799999999999766666666665 58999999997
No 126
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=36.39 E-value=60 Score=26.82 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=30.5
Q ss_pred hhcCCCccEEEeeeCC----C-------------chhHhHHHHHHCCCeEEEeeec
Q 048651 43 TCTTSNYDFVNLAFCP----P-------------LEIIDIKSCQAKGVKVMLSIEG 81 (134)
Q Consensus 43 ~C~~~~ydiV~laF~~----P-------------~~~~dI~~CQ~~GkkVlLSlGG 81 (134)
++.+.+.|||++||-. | .+.+-|+++.++|+.|+.|-|=
T Consensus 99 ~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN 154 (298)
T cd07494 99 KAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGN 154 (298)
T ss_pred HHHhcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCC
Confidence 3456789999999973 1 1677789999999999998754
No 127
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=36.22 E-value=50 Score=27.38 Aligned_cols=50 Identities=14% Similarity=0.062 Sum_probs=39.8
Q ss_pred CCCCCchhhhhcCCCccEEEeeeC---CCchh-HhHHHHHHCCCeEEEeeecCC
Q 048651 34 NGIQSTFMETCTTSNYDFVNLAFC---PPLEI-IDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 34 ~~~~~~L~~~C~~~~ydiV~laF~---~P~~~-~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
.++..-++..|.+..+|++..=+. +|.+. .-++.|-++|+.+-+|++...
T Consensus 84 ~~~lkv~R~Av~~~rVDil~~p~~~r~~~gldh~~a~laa~~~valeisl~~ll 137 (229)
T COG1603 84 PGSLKVNRAAVENKRVDILSHPETGRKDPGLDHVLARLAAEKGVALEISLRPLL 137 (229)
T ss_pred cCcHHHHHHHHhccCccEEEcccccCCCccccHHHHHHHHhcCceEEEehHHhh
Confidence 344556899999999999988666 45666 348889999999999998874
No 128
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=36.14 E-value=82 Score=26.34 Aligned_cols=42 Identities=24% Similarity=0.236 Sum_probs=30.6
Q ss_pred CchhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHHHHHH
Q 048651 59 PLEIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLW 102 (134)
Q Consensus 59 P~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw 102 (134)
|.........=++|+-|+ +||++|+..|+++..|.-.|..+=
T Consensus 112 ~~~~~~A~~~l~~grVvI--f~gGtg~P~fTTDt~AALrA~ei~ 153 (238)
T COG0528 112 PYSRREAIRHLEKGRVVI--FGGGTGNPGFTTDTAAALRAEEIE 153 (238)
T ss_pred ccCHHHHHHHHHcCCEEE--EeCCCCCCCCchHHHHHHHHHHhC
Confidence 334455555556676665 578899999999999999997763
No 129
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=35.71 E-value=1.1e+02 Score=25.77 Aligned_cols=41 Identities=29% Similarity=0.391 Sum_probs=27.3
Q ss_pred CccEEEeeeCCCchhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHH
Q 048651 48 NYDFVNLAFCPPLEIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVA 98 (134)
Q Consensus 48 ~ydiV~laF~~P~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA 98 (134)
+.++|..+|-.| ...-|+.+|+.|++|+.- .+|.++|+..+
T Consensus 113 ~~~~v~~~~G~p-~~~~i~~l~~~gi~v~~~---------v~s~~~A~~a~ 153 (330)
T PF03060_consen 113 KPDVVSFGFGLP-PPEVIERLHAAGIKVIPQ---------VTSVREARKAA 153 (330)
T ss_dssp --SEEEEESSSC--HHHHHHHHHTT-EEEEE---------ESSHHHHHHHH
T ss_pred ceEEEEeecccc-hHHHHHHHHHcCCccccc---------cCCHHHHHHhh
Confidence 466999999887 356688888888888864 45566666544
No 130
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=35.09 E-value=1.2e+02 Score=22.61 Aligned_cols=52 Identities=13% Similarity=0.085 Sum_probs=29.9
Q ss_pred hhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHHHHHHHhhCCCCCCCcC
Q 048651 61 EIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRP 114 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f~~g~s~~RP 114 (134)
+..||..+++.|.+.++--.|....-.+...- -+. ++.+|-.+.++..++.|
T Consensus 118 ~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~ 169 (170)
T TIGR01668 118 LFTDVMGGNRNGSYTILVEPLVHPDQWFIKRI-WRR-VERTVLKFLVSRGGPAP 169 (170)
T ss_pred chHHHHHHHHcCCeEEEEccCcCCccccchhh-HHH-HHHHHHHHhccccCCCC
Confidence 55799999999999887766664432232221 122 33344445555444444
No 131
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=34.29 E-value=59 Score=25.45 Aligned_cols=35 Identities=11% Similarity=0.104 Sum_probs=29.4
Q ss_pred CccEEEeeeCCC---chhHhHHHHHHCCCeEEEeeecC
Q 048651 48 NYDFVNLAFCPP---LEIIDIKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 48 ~ydiV~laF~~P---~~~~dI~~CQ~~GkkVlLSlGG~ 82 (134)
+.+||++||-.+ .+.+.|.++.++|+.|+.|-|=.
T Consensus 119 ~~~iin~S~g~~~~~~~~~~~~~~~~~g~liV~aaGN~ 156 (255)
T cd04077 119 KPAVANMSLGGGASTALDAAVAAAVNAGVVVVVAAGNS 156 (255)
T ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHCCCEEEEeCCCC
Confidence 689999999843 48888999999999999998744
No 132
>COG4925 Uncharacterized conserved protein [Function unknown]
Probab=34.09 E-value=23 Score=27.77 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=26.2
Q ss_pred HHCC--CeEEE-eeecCCcccccCCHHHHHHHHHHH
Q 048651 69 QAKG--VKVML-SIEGGAGNYYLSFSEDARQVADYL 101 (134)
Q Consensus 69 Q~~G--kkVlL-SlGG~~g~~~l~s~~~A~~fA~~L 101 (134)
|++| +|+.| -.+|.+..++|.+.+.|++||+.|
T Consensus 45 ~~~~~tmk~rl~~v~g~~~tatLnD~atAkdfa~lL 80 (166)
T COG4925 45 QEEGETMKRRLIQVNGETTTATLNDGATAKDFAELL 80 (166)
T ss_pred cccCCceEEEEEeeCCEEEEEEecCChhHHHHHHhC
Confidence 4444 44444 789999999999999999999866
No 133
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=33.83 E-value=58 Score=27.17 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=35.9
Q ss_pred CCccEEEeeeCCCc-hhHhHHHHHHCCCeEEEeeecCCcc-----cccC------CHHHHHHHHHHHHHh
Q 048651 47 SNYDFVNLAFCPPL-EIIDIKSCQAKGVKVMLSIEGGAGN-----YYLS------FSEDARQVADYLWNN 104 (134)
Q Consensus 47 ~~ydiV~laF~~P~-~~~dI~~CQ~~GkkVlLSlGG~~g~-----~~l~------s~~~A~~fA~~Lw~~ 104 (134)
.+||+|+.+.-++. -..=++.|++++++++.| ||+.+. ..+. .+.=|+.+=..|-..
T Consensus 120 ~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~-gGag~k~dp~~~~~~di~~t~~~pla~~~R~~lr~~ 188 (268)
T PRK15116 120 AGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTT-GGAGGQIDPTQIQVVDLAKTIQDPLAAKLRERLKSD 188 (268)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE-CCcccCCCCCeEEEEeeecccCChHHHHHHHHHHHh
Confidence 46999988776543 223468999999998766 666432 2222 245566666666653
No 134
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=33.63 E-value=63 Score=27.44 Aligned_cols=45 Identities=7% Similarity=0.088 Sum_probs=33.8
Q ss_pred chhhhhcCCCccEEEeeeC--CCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 39 TFMETCTTSNYDFVNLAFC--PPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~--~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
.+.+.+...++++.++.=+ +|. +.+-++.+++.+.-+++++||+.
T Consensus 43 ~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS 92 (375)
T cd08179 43 KVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGS 92 (375)
T ss_pred HHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 5666666667777655444 454 66778899999999999999985
No 135
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=33.58 E-value=1.4e+02 Score=28.21 Aligned_cols=19 Identities=16% Similarity=0.364 Sum_probs=17.0
Q ss_pred hhHhHHHHHHCCCeEEEee
Q 048651 61 EIIDIKSCQAKGVKVMLSI 79 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSl 79 (134)
|++=|++|+++|.+|+|=+
T Consensus 247 fk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 247 FKTMVRALHDAGIEVILDV 265 (688)
T ss_pred HHHHHHHHHHCCCEEEEEE
Confidence 7788999999999999964
No 136
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=33.45 E-value=48 Score=29.39 Aligned_cols=31 Identities=10% Similarity=0.021 Sum_probs=24.7
Q ss_pred CCccEEEeeeCCCchhHhHHHHHHCCCeEEE
Q 048651 47 SNYDFVNLAFCPPLEIIDIKSCQAKGVKVML 77 (134)
Q Consensus 47 ~~ydiV~laF~~P~~~~dI~~CQ~~GkkVlL 77 (134)
..||+|+|+--.-.+...++.+|..|+||.|
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~l 32 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAV 32 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEE
Confidence 4699999987533478888888877999977
No 137
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=33.43 E-value=63 Score=26.14 Aligned_cols=60 Identities=22% Similarity=0.187 Sum_probs=37.1
Q ss_pred CCccEEEeeeCCCchh-HhHHHHHHCCCeEEEeeecCCc----ccccCC------HHHHHHHHHHHHHhhC
Q 048651 47 SNYDFVNLAFCPPLEI-IDIKSCQAKGVKVMLSIEGGAG----NYYLSF------SEDARQVADYLWNNFL 106 (134)
Q Consensus 47 ~~ydiV~laF~~P~~~-~dI~~CQ~~GkkVlLSlGG~~g----~~~l~s------~~~A~~fA~~Lw~~f~ 106 (134)
.++|+|+.+--++... .=++.|++++++++-|.|.++- ...+.+ +.-|+.+=..|-....
T Consensus 101 ~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~~~R~~Lrk~~~ 171 (231)
T cd00755 101 GDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISKTSGDPLARKVRKRLRKRGI 171 (231)
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEeccccCcHHHHHHHHHHHcCC
Confidence 3589988876554432 3478999999999888654431 122222 3456666666665443
No 138
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=33.33 E-value=35 Score=33.71 Aligned_cols=39 Identities=23% Similarity=0.377 Sum_probs=28.3
Q ss_pred hcCCCccEEEeeeC------CCc---hhHhHHHHHHCCCeEEEeeecC
Q 048651 44 CTTSNYDFVNLAFC------PPL---EIIDIKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 44 C~~~~ydiV~laF~------~P~---~~~dI~~CQ~~GkkVlLSlGG~ 82 (134)
|+..+++.=++-|+ ||- ....++.|++.|+||++-.|=-
T Consensus 569 ~d~~n~p~~nl~FlGl~s~idPPR~~vP~Av~~CrsAGIkvimVTgdh 616 (1019)
T KOG0203|consen 569 TDDVNFPTDNLRFLGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDH 616 (1019)
T ss_pred cCCCCCcchhccccchhhccCCCcccCchhhhhhhhhCceEEEEecCc
Confidence 34455555555555 553 7788999999999999987753
No 139
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=33.19 E-value=65 Score=26.86 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=30.8
Q ss_pred chhhhhcCCCccEEEeeeC--CCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 39 TFMETCTTSNYDFVNLAFC--PPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~--~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
++.+.+... ++++...=+ +|. +.+-++.+++.+..++++|||+.
T Consensus 41 ~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs 89 (332)
T cd08180 41 KVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGS 89 (332)
T ss_pred HHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCch
Confidence 355566544 565544333 565 45778889999999999999985
No 140
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=33.03 E-value=43 Score=28.26 Aligned_cols=32 Identities=31% Similarity=0.483 Sum_probs=25.7
Q ss_pred CCCccEEEeeeCCCc--------------hhHhHHHHHHCCCeEEEe
Q 048651 46 TSNYDFVNLAFCPPL--------------EIIDIKSCQAKGVKVMLS 78 (134)
Q Consensus 46 ~~~ydiV~laF~~P~--------------~~~dI~~CQ~~GkkVlLS 78 (134)
...|.+|-| |+||. +..||+..|+.|+-|+..
T Consensus 49 ~~~~tVVSI-fVNP~QF~pteDL~~YPrt~~~D~~~L~~Lgvdvvfa 94 (283)
T KOG3042|consen 49 ENTYTVVSI-FVNPSQFAPTEDLDNYPRTLPDDIKLLESLGVDVVFA 94 (283)
T ss_pred hCceEEEEE-EechhhcCChhHhhcCCccCccHHHHHHhcCceEEEc
Confidence 346777777 88762 899999999999988765
No 141
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=32.98 E-value=83 Score=24.47 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=36.4
Q ss_pred CceEEEccCCCC--CCchhhhhcCCCccEEEeeeCCCchhHhHHH-HHHCCCeEEEeeecC
Q 048651 25 SGITIYWVQNGI--QSTFMETCTTSNYDFVNLAFCPPLEIIDIKS-CQAKGVKVMLSIEGG 82 (134)
Q Consensus 25 ~~i~~YWGq~~~--~~~L~~~C~~~~ydiV~laF~~P~~~~dI~~-CQ~~GkkVlLSlGG~ 82 (134)
-+|+++-|-... +..+.+.-...+.|+|.++.-.|.-+.=|.. .+.....|++.+||.
T Consensus 75 l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~PkQE~~~~~~~~~~~~~v~~gvGg~ 135 (177)
T TIGR00696 75 LKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCPKQEIWMRNHRHLKPDAVMIGVGGS 135 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCcHhHHHHHHhHHhCCCcEEEEecee
Confidence 345665332221 1233343445689999999999964433433 356678999999997
No 142
>PRK06354 pyruvate kinase; Provisional
Probab=32.81 E-value=79 Score=29.41 Aligned_cols=43 Identities=16% Similarity=0.067 Sum_probs=30.9
Q ss_pred hhHhHHHHHHCCCeEEEeeecCC--cccccCCHHHHHHHHHHHHH
Q 048651 61 EIIDIKSCQAKGVKVMLSIEGGA--GNYYLSFSEDARQVADYLWN 103 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSlGG~~--g~~~l~s~~~A~~fA~~Lw~ 103 (134)
.+.=|+.|.++||.|+.+-==-. -....+|.+++.++||-+.+
T Consensus 266 qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEvsDVaNav~D 310 (590)
T PRK06354 266 QKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEASDVANAILD 310 (590)
T ss_pred HHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhhHHHHHHhhh
Confidence 44568999999999998621111 12458888899998887775
No 143
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=32.62 E-value=1.2e+02 Score=24.13 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=35.0
Q ss_pred hhHhHHHHHHCCC----eEEEeeecCCcccccCCHHHHHHHHHHHHHhhC
Q 048651 61 EIIDIKSCQAKGV----KVMLSIEGGAGNYYLSFSEDARQVADYLWNNFL 106 (134)
Q Consensus 61 ~~~dI~~CQ~~Gk----kVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f~ 106 (134)
+.+.++++..+|+ |++|.|.-.+..++..+....++-.++.+..|+
T Consensus 183 ~~~~v~~~~~~g~ip~~KlvlGlp~YG~~w~~~~~~~~~~~~~~~~~~~g 232 (253)
T cd06545 183 AVNDLNYWNERGLASKDKLVLGLPFYGYGFYYNGIPTIRNKVAFAKQNYG 232 (253)
T ss_pred HHHHHHHHHHcCCCCHHHEEEEeCCccccccCCCHHHHHHHHHHHHHhcC
Confidence 6678888877776 899999887777777776555555688888854
No 144
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=32.49 E-value=1.5e+02 Score=25.07 Aligned_cols=20 Identities=35% Similarity=0.343 Sum_probs=14.5
Q ss_pred CchhHhHHHHHHCCCeEEEe
Q 048651 59 PLEIIDIKSCQAKGVKVMLS 78 (134)
Q Consensus 59 P~~~~dI~~CQ~~GkkVlLS 78 (134)
|..++=|+..+++|.||+|.
T Consensus 85 Pdp~~mi~~Lh~~G~kv~l~ 104 (340)
T cd06597 85 PNPKGMIDELHEQGVKVLLW 104 (340)
T ss_pred CCHHHHHHHHHHCCCEEEEE
Confidence 34566788888888888763
No 145
>PRK11579 putative oxidoreductase; Provisional
Probab=32.19 E-value=81 Score=26.15 Aligned_cols=20 Identities=15% Similarity=0.085 Sum_probs=16.1
Q ss_pred CchhhhhcCCCccEEEeeeC
Q 048651 38 STFMETCTTSNYDFVNLAFC 57 (134)
Q Consensus 38 ~~L~~~C~~~~ydiV~laF~ 57 (134)
.++.+..+++++|+|.|+=.
T Consensus 54 ~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 54 SEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred CCHHHHhcCCCCCEEEEcCC
Confidence 36777777889999999755
No 146
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=32.09 E-value=1.5e+02 Score=25.19 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=30.5
Q ss_pred hhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecC
Q 048651 61 EIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIE 128 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE 128 (134)
+.++|+.++ .+..|++||+|...+..-.+.++=.+.++.+.. ..|.+++++-
T Consensus 127 ~~~~l~~~~-~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~---------------~ad~lelN~s 178 (344)
T PRK05286 127 LAERLKKAY-RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP---------------YADYFTVNIS 178 (344)
T ss_pred HHHHHHHhc-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh---------------hCCEEEEEcc
Confidence 455676665 678899999987532222234444444444432 1677777764
No 147
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=31.85 E-value=53 Score=21.42 Aligned_cols=24 Identities=8% Similarity=0.072 Sum_probs=20.9
Q ss_pred hhHhHHHHHHCCCeEEEeeecCCc
Q 048651 61 EIIDIKSCQAKGVKVMLSIEGGAG 84 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSlGG~~g 84 (134)
+.+..+.+++.||.||+=+++.-.
T Consensus 6 ~~~al~~A~~~~kpvlv~f~a~wC 29 (82)
T PF13899_consen 6 YEEALAEAKKEGKPVLVDFGADWC 29 (82)
T ss_dssp HHHHHHHHHHHTSEEEEEEETTTT
T ss_pred HHHHHHHHHHcCCCEEEEEECCCC
Confidence 678889999999999999988753
No 148
>PRK10426 alpha-glucosidase; Provisional
Probab=31.55 E-value=1.7e+02 Score=27.30 Aligned_cols=59 Identities=19% Similarity=0.054 Sum_probs=39.4
Q ss_pred CchhHhHHHHHHCCCeEEEee-------------------------e---------cCCcccccCCHHHHHHHHHHHHHh
Q 048651 59 PLEIIDIKSCQAKGVKVMLSI-------------------------E---------GGAGNYYLSFSEDARQVADYLWNN 104 (134)
Q Consensus 59 P~~~~dI~~CQ~~GkkVlLSl-------------------------G---------G~~g~~~l~s~~~A~~fA~~Lw~~ 104 (134)
|..++=|+..+++|.||++.+ | |..+-+.|++++..+.+.+.+-..
T Consensus 269 Pdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~ 348 (635)
T PRK10426 269 PQLDSRIKQLNEEGIQFLGYINPYLASDGDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKN 348 (635)
T ss_pred CCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHH
Confidence 456777888888888888886 1 112335688888777777776543
Q ss_pred hCCCCCCCcCCCCcccceeeeec
Q 048651 105 FLGGQSSSRPLGNAVLDGIDFGI 127 (134)
Q Consensus 105 f~~g~s~~RPfg~~~lDG~D~Di 127 (134)
+ -+..+||+=.|.
T Consensus 349 ~----------~~~Gvdg~w~D~ 361 (635)
T PRK10426 349 M----------IGLGCSGWMADF 361 (635)
T ss_pred H----------hhcCCCEEeeeC
Confidence 3 445588875554
No 149
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=31.47 E-value=69 Score=27.48 Aligned_cols=45 Identities=7% Similarity=0.122 Sum_probs=31.4
Q ss_pred chhhhhcCCCccEEEeeeC--CCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 39 TFMETCTTSNYDFVNLAFC--PPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~--~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
++.+.....++++.+..=+ +|. +.+-++.+++++.-++++|||+.
T Consensus 40 ~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 89 (398)
T cd08178 40 KVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGS 89 (398)
T ss_pred HHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 3444444456666544323 565 66778899999999999999985
No 150
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=31.32 E-value=96 Score=24.22 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=29.7
Q ss_pred hcCCCccEEEeeeCCCchhHhHHHHHHCCCeEEEeee
Q 048651 44 CTTSNYDFVNLAFCPPLEIIDIKSCQAKGVKVMLSIE 80 (134)
Q Consensus 44 C~~~~ydiV~laF~~P~~~~dI~~CQ~~GkkVlLSlG 80 (134)
.-++.+|.++|.--|-.|..=+...|++||+|+. +|
T Consensus 101 ~~~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v-~g 136 (160)
T TIGR00288 101 IYNPNIDAVALVTRDADFLPVINKAKENGKETIV-IG 136 (160)
T ss_pred hccCCCCEEEEEeccHhHHHHHHHHHHCCCEEEE-Ee
Confidence 3357899988877777799999999999999986 55
No 151
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=30.91 E-value=68 Score=26.99 Aligned_cols=45 Identities=11% Similarity=0.273 Sum_probs=32.3
Q ss_pred chhhhhcCCCccEEEeeeC--CCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 39 TFMETCTTSNYDFVNLAFC--PPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~--~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
++.+.....+++++++.-+ +|. +.+-++.+++++..++++|||+.
T Consensus 42 ~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs 91 (370)
T cd08551 42 KVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGS 91 (370)
T ss_pred HHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCch
Confidence 4555555556777655434 454 66778888999999999999985
No 152
>PRK15452 putative protease; Provisional
Probab=30.84 E-value=1.5e+02 Score=26.51 Aligned_cols=40 Identities=13% Similarity=0.096 Sum_probs=29.7
Q ss_pred chhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHHHHHHHhh
Q 048651 60 LEIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNF 105 (134)
Q Consensus 60 ~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f 105 (134)
.+++.|+.|+++|+||.+.+= .+..+++-..+.++|..+.
T Consensus 47 dl~eav~~ah~~g~kvyvt~n------~i~~e~el~~~~~~l~~l~ 86 (443)
T PRK15452 47 NLALGINEAHALGKKFYVVVN------IAPHNAKLKTFIRDLEPVI 86 (443)
T ss_pred HHHHHHHHHHHcCCEEEEEec------CcCCHHHHHHHHHHHHHHH
Confidence 388889999999999999753 3555666777777776543
No 153
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=30.19 E-value=1.3e+02 Score=25.30 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=25.4
Q ss_pred hhhhhcCCCccEEEeeeCCCchhHhHHHHHHCCCeEE
Q 048651 40 FMETCTTSNYDFVNLAFCPPLEIIDIKSCQAKGVKVM 76 (134)
Q Consensus 40 L~~~C~~~~ydiV~laF~~P~~~~dI~~CQ~~GkkVl 76 (134)
+-+.|-..+.++|.++|..|. +.|+..|++|.+|+
T Consensus 79 ~~~~~~~~~v~~v~~~~g~p~--~~i~~lk~~g~~v~ 113 (307)
T TIGR03151 79 LVDLVIEEKVPVVTTGAGNPG--KYIPRLKENGVKVI 113 (307)
T ss_pred HHHHHHhCCCCEEEEcCCCcH--HHHHHHHHcCCEEE
Confidence 334444568899988887763 46788888888887
No 154
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=29.91 E-value=94 Score=22.60 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=28.0
Q ss_pred hhhhhcCCCccEEEeeeC--C-----C------chhHhHHHHHHCCCeEEEee
Q 048651 40 FMETCTTSNYDFVNLAFC--P-----P------LEIIDIKSCQAKGVKVMLSI 79 (134)
Q Consensus 40 L~~~C~~~~ydiV~laF~--~-----P------~~~~dI~~CQ~~GkkVlLSl 79 (134)
|.......++|+|++.|- | | .+++-|+.|+++|.+|++..
T Consensus 51 l~~~~~~~~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 51 FYEDVIALKPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred HHHHHHhcCCCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 333333457888888876 1 1 27778899999999988863
No 155
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=29.86 E-value=67 Score=26.34 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=29.6
Q ss_pred hcCCCccEEEeeeCCC--------chhHhHHHHHHCCCeEEEeeec
Q 048651 44 CTTSNYDFVNLAFCPP--------LEIIDIKSCQAKGVKVMLSIEG 81 (134)
Q Consensus 44 C~~~~ydiV~laF~~P--------~~~~dI~~CQ~~GkkVlLSlGG 81 (134)
+...+.+||++||-.+ .+.+-++.++++|+.|+.|-|=
T Consensus 140 a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN 185 (346)
T cd07475 140 AVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGN 185 (346)
T ss_pred HHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCC
Confidence 3455789999999832 3677899999999999988763
No 156
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=29.81 E-value=80 Score=26.82 Aligned_cols=45 Identities=13% Similarity=0.293 Sum_probs=32.5
Q ss_pred chhhhhcCCCccEEEeeeC--CCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 39 TFMETCTTSNYDFVNLAFC--PPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~--~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
++.+.+...++++....-+ +|. +.+-++.+++.+.-++++|||+.
T Consensus 45 ~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS 94 (374)
T cd08189 45 KVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGS 94 (374)
T ss_pred HHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 4555555556666655444 454 66778889999999999999985
No 157
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=29.49 E-value=74 Score=27.02 Aligned_cols=44 Identities=16% Similarity=0.386 Sum_probs=29.5
Q ss_pred hhhhhcCCCccEEEeeeC-CCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 40 FMETCTTSNYDFVNLAFC-PPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 40 L~~~C~~~~ydiV~laF~-~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
+.......++++....+. +|. +.+-++.+++.+.-++++|||+.
T Consensus 39 v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 86 (374)
T cd08183 39 LIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGS 86 (374)
T ss_pred HHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCch
Confidence 333333445565554422 565 56677888899999999999985
No 158
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=29.45 E-value=66 Score=27.41 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=33.0
Q ss_pred chhhhhcCCCccEEEeeeC--CCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 39 TFMETCTTSNYDFVNLAFC--PPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~--~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
++.+.+...++++++..=+ +|. +.+.++.+++.+.-+++++||+.
T Consensus 48 ~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 97 (382)
T cd08187 48 RVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGS 97 (382)
T ss_pred HHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChH
Confidence 4666666566777655444 454 66678888999999999999985
No 159
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=29.31 E-value=70 Score=24.08 Aligned_cols=56 Identities=13% Similarity=0.102 Sum_probs=39.8
Q ss_pred eEEEccCCCCCCchhhhhcCCCccEEEeeeCCC----chhHhHHHHHHCCC-eEEEeeecC
Q 048651 27 ITIYWVQNGIQSTFMETCTTSNYDFVNLAFCPP----LEIIDIKSCQAKGV-KVMLSIEGG 82 (134)
Q Consensus 27 i~~YWGq~~~~~~L~~~C~~~~ydiV~laF~~P----~~~~dI~~CQ~~Gk-kVlLSlGG~ 82 (134)
=++|-|-.-....+-+.+...+.|+|-+|.+.. .+.+=++.++++|- .+.+=+||.
T Consensus 31 eVi~LG~~v~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~ 91 (134)
T TIGR01501 31 NVVNLGVLSPQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGN 91 (134)
T ss_pred EEEECCCCCCHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCC
Confidence 367777555445677777778999999999943 36777888888875 333556665
No 160
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=29.15 E-value=80 Score=25.16 Aligned_cols=40 Identities=8% Similarity=-0.091 Sum_probs=29.2
Q ss_pred hhhcCCCccEEEeeeCCCc-------hhHhHHHHHHC-------CCeEEEeeec
Q 048651 42 ETCTTSNYDFVNLAFCPPL-------EIIDIKSCQAK-------GVKVMLSIEG 81 (134)
Q Consensus 42 ~~C~~~~ydiV~laF~~P~-------~~~dI~~CQ~~-------GkkVlLSlGG 81 (134)
+++.+.+.|||++||-.+. +.+.++++.++ |+.|+.|-|=
T Consensus 118 ~~a~~~g~~Vin~S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN 171 (273)
T cd07485 118 VYAADNGAVILQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGN 171 (273)
T ss_pred HHHHHcCCcEEEecCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCC
Confidence 3455668999999998432 56668888888 8888877653
No 161
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=28.62 E-value=2.7e+02 Score=22.85 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=17.2
Q ss_pred CchhHhHHHHHHCCCeEEEee
Q 048651 59 PLEIIDIKSCQAKGVKVMLSI 79 (134)
Q Consensus 59 P~~~~dI~~CQ~~GkkVlLSl 79 (134)
|..++=|+.++++|.||++++
T Consensus 74 Pdp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 74 PDPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CCHHHHHHHHHHCCCEEEEEe
Confidence 446777888999999999976
No 162
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=28.49 E-value=56 Score=30.02 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=37.8
Q ss_pred hhhhhcCCCccEEEeeeCCCc--------hhHhHHHHHHCCCeEEEeeecC--CcccccCCHHH
Q 048651 40 FMETCTTSNYDFVNLAFCPPL--------EIIDIKSCQAKGVKVMLSIEGG--AGNYYLSFSED 93 (134)
Q Consensus 40 L~~~C~~~~ydiV~laF~~P~--------~~~dI~~CQ~~GkkVlLSlGG~--~g~~~l~s~~~ 93 (134)
|+..-+++++.-|+|--=.|. +...|+..+++||+|+.|++|. .|.|.+.+..+
T Consensus 338 l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD 401 (584)
T TIGR00705 338 LRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAASGGYWIASAAD 401 (584)
T ss_pred HHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCC
Confidence 444445677777777433342 6677888889999999999994 45677776543
No 163
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=28.26 E-value=85 Score=24.47 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=30.5
Q ss_pred chhhhhcCCCccEEEeeeCCCchhHhHHHHHHCCCeEEEeeecC
Q 048651 39 TFMETCTTSNYDFVNLAFCPPLEIIDIKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~~P~~~~dI~~CQ~~GkkVlLSlGG~ 82 (134)
+|.+.+...++|+|+++-......+-...|.++|++.+++.-=.
T Consensus 137 ~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~ 180 (213)
T PRK05472 137 ELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPV 180 (213)
T ss_pred HHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCce
Confidence 36666666788998887543334444677889999888887543
No 164
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=28.23 E-value=88 Score=24.12 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=28.2
Q ss_pred hhcCCCccEEEeeeCCC--------chhHhHHHHHH-CCCeEEEeeec
Q 048651 43 TCTTSNYDFVNLAFCPP--------LEIIDIKSCQA-KGVKVMLSIEG 81 (134)
Q Consensus 43 ~C~~~~ydiV~laF~~P--------~~~~dI~~CQ~-~GkkVlLSlGG 81 (134)
++...+++||++||-.+ .+.+-+++++. +|+-|+.|-|=
T Consensus 92 ~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~gvliv~aaGN 139 (242)
T cd07498 92 WAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGKGGVVLFAAGN 139 (242)
T ss_pred HHHHCCCeEEEeccCCCCCCchHHHHHHHHHHHHhhcCCeEEEEecCC
Confidence 34566899999998721 25666777887 88888888653
No 165
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=28.20 E-value=1.1e+02 Score=23.67 Aligned_cols=37 Identities=19% Similarity=0.029 Sum_probs=27.9
Q ss_pred CCCccEEEeeeCCCchhHhHHHHHHCCCeEEEeeecC
Q 048651 46 TSNYDFVNLAFCPPLEIIDIKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 46 ~~~ydiV~laF~~P~~~~dI~~CQ~~GkkVlLSlGG~ 82 (134)
++.+|.|+|---|-.|..-|+..|.+||.|.+-=.+.
T Consensus 108 ~~~~D~ivl~SgD~DF~p~v~~~~~~G~rv~v~~~~~ 144 (181)
T COG1432 108 KKNVDTIVLFSGDGDFIPLVEAARDKGKRVEVAGIEP 144 (181)
T ss_pred ccCCCEEEEEcCCccHHHHHHHHHHcCCEEEEEecCC
Confidence 5678888885556678888999999999887643333
No 166
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=27.92 E-value=1.3e+02 Score=26.75 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=34.3
Q ss_pred ceEEEccCCCCCCchhhhhcCCCccEEEeeeCCCc-hhHhHHHHHHCCCeEEEe
Q 048651 26 GITIYWVQNGIQSTFMETCTTSNYDFVNLAFCPPL-EIIDIKSCQAKGVKVMLS 78 (134)
Q Consensus 26 ~i~~YWGq~~~~~~L~~~C~~~~ydiV~laF~~P~-~~~dI~~CQ~~GkkVlLS 78 (134)
++.+++|+. .+.+.+..+++|+|+.+=.... +.. .-.|-+.||+|.|+
T Consensus 73 ~~~v~~G~~----~~~~l~~~~~vD~Vv~Ai~G~aGl~p-tl~Ai~aGK~VaLA 121 (385)
T PRK05447 73 GIEVLAGEE----GLCELAALPEADVVVAAIVGAAGLLP-TLAAIRAGKRIALA 121 (385)
T ss_pred CceEEEChh----HHHHHhcCCCCCEEEEeCcCcccHHH-HHHHHHCCCcEEEe
Confidence 456888853 4777788889999998877432 333 44666889999984
No 167
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=27.80 E-value=1.2e+02 Score=23.07 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=38.1
Q ss_pred CceEEEccCCCC---CCchhhhhcCCCccEEEeeeCCCchhHhHHHHHH-CCCeEEEeeecC
Q 048651 25 SGITIYWVQNGI---QSTFMETCTTSNYDFVNLAFCPPLEIIDIKSCQA-KGVKVMLSIEGG 82 (134)
Q Consensus 25 ~~i~~YWGq~~~---~~~L~~~C~~~~ydiV~laF~~P~~~~dI~~CQ~-~GkkVlLSlGG~ 82 (134)
-+|+++..-..+ +..+.+.-+..+.|+|.++.-.|.-+.=|...++ -+.+|.+.+||.
T Consensus 75 l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~PkQE~~~~~~~~~l~~~v~i~vG~~ 136 (172)
T PF03808_consen 75 LRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGAPKQERWIARHRQRLPAGVIIGVGGA 136 (172)
T ss_pred eEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECch
Confidence 346655543222 2334444456788999999999976665666665 466699999997
No 168
>PRK12359 flavodoxin FldB; Provisional
Probab=27.16 E-value=1.5e+02 Score=22.88 Aligned_cols=55 Identities=16% Similarity=0.040 Sum_probs=27.3
Q ss_pred CccEEEeeeCC---CchhH-------hHHHHHHCCCeEEEeeec-CCcccccCCHHHHHHHHHHHHH
Q 048651 48 NYDFVNLAFCP---PLEII-------DIKSCQAKGVKVMLSIEG-GAGNYYLSFSEDARQVADYLWN 103 (134)
Q Consensus 48 ~ydiV~laF~~---P~~~~-------dI~~CQ~~GkkVlLSlGG-~~g~~~l~s~~~A~~fA~~Lw~ 103 (134)
+||+|++++.. +.+.. +++..-=+||||. -+|- ....|.-.=......+.+.|..
T Consensus 45 ~yD~iIlG~pTw~~Gel~~d~~~~~~~l~~~dl~gK~vA-lFG~Gd~~~y~~~f~~a~~~l~~~l~~ 110 (172)
T PRK12359 45 QYDVLILGIPTWDFGEIQEDWEAVWDQLDDLNLEGKIVA-LYGMGDQLGYGEWFLDALGMLHDKLAP 110 (172)
T ss_pred cCCEEEEEecccCCCcCcHHHHHHHHHHhhCCCCCCEEE-EEeCCCCccchHHHHHHHHHHHHHHHh
Confidence 58999998872 22322 2333223689987 4442 2212321112334455555554
No 169
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=27.14 E-value=97 Score=26.49 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=29.5
Q ss_pred HhHHHHHHCCCeEEEeeecCCc--ccccCCHHHHHHHHHHHHH
Q 048651 63 IDIKSCQAKGVKVMLSIEGGAG--NYYLSFSEDARQVADYLWN 103 (134)
Q Consensus 63 ~dI~~CQ~~GkkVlLSlGG~~g--~~~l~s~~~A~~fA~~Lw~ 103 (134)
.=|+.|+++||.|+++--=-.. ....+|.++..++|+-+.+
T Consensus 265 ~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv~Dv~nav~d 307 (348)
T PF00224_consen 265 RIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEVSDVANAVLD 307 (348)
T ss_dssp HHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHHhhHHHHHHc
Confidence 4489999999999998543322 3568899999999988876
No 170
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=27.09 E-value=52 Score=25.75 Aligned_cols=35 Identities=17% Similarity=0.028 Sum_probs=22.6
Q ss_pred hHhHHHHHHCCCeEEEeeecCCcc-------cccCCHHHHHH
Q 048651 62 IIDIKSCQAKGVKVMLSIEGGAGN-------YYLSFSEDARQ 96 (134)
Q Consensus 62 ~~dI~~CQ~~GkkVlLSlGG~~g~-------~~l~s~~~A~~ 96 (134)
.+-.+.+|+.+|.|+||||-.... -+|.+.+-|+-
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~ 68 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEY 68 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHH
T ss_pred HHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHH
Confidence 466899999999999999988755 35666654443
No 171
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=27.05 E-value=87 Score=26.28 Aligned_cols=45 Identities=9% Similarity=0.156 Sum_probs=29.9
Q ss_pred chhhhhcCCCccEEEeeeC--CCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 39 TFMETCTTSNYDFVNLAFC--PPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~--~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
++.+.....+++++...-. +|. +.+-++.+++.+.-+++++||+.
T Consensus 40 ~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs 89 (345)
T cd08171 40 KIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGK 89 (345)
T ss_pred HHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcH
Confidence 3444444445666554433 554 55667778888999999999985
No 172
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=26.80 E-value=1.2e+02 Score=24.30 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=30.4
Q ss_pred CCCccEEEeeeCC-----CchhHhHHHHHHCCCeEEEeeecCC
Q 048651 46 TSNYDFVNLAFCP-----PLEIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 46 ~~~ydiV~laF~~-----P~~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
....+||++||-. +.+.+.|+.+.++|+.|+.|-|=..
T Consensus 135 ~~~~~Iin~S~G~~~~~~~~~~~ai~~a~~~GvivV~AAGN~g 177 (285)
T cd07496 135 PNPAKVINLSLGGDGACSATMQNAINDVRARGVLVVVAAGNEG 177 (285)
T ss_pred CCCCeEEEeCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 3468999999983 2377889999999999999987543
No 173
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=26.65 E-value=83 Score=26.42 Aligned_cols=45 Identities=11% Similarity=0.229 Sum_probs=31.6
Q ss_pred chhhhhcCCCccEEEee-eC-CCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 39 TFMETCTTSNYDFVNLA-FC-PPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~la-F~-~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
++.+.-...++++.... +- +|. +.+-+..+++.|..++++|||+.
T Consensus 40 ~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 89 (366)
T PF00465_consen 40 RVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGS 89 (366)
T ss_dssp HHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHH
T ss_pred HHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 44444444566666555 32 443 77888999999999999999984
No 174
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=26.60 E-value=1.2e+02 Score=23.05 Aligned_cols=37 Identities=14% Similarity=0.138 Sum_probs=28.8
Q ss_pred hhcCCCccEEEeeeCCC--chhHhHHHHHHCCCeEEEee
Q 048651 43 TCTTSNYDFVNLAFCPP--LEIIDIKSCQAKGVKVMLSI 79 (134)
Q Consensus 43 ~C~~~~ydiV~laF~~P--~~~~dI~~CQ~~GkkVlLSl 79 (134)
.+...+.|+|.+-+..| .+.+-|+.|+++|+++++.+
T Consensus 71 ~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~ 109 (206)
T TIGR03128 71 QAFAAGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDL 109 (206)
T ss_pred HHHHcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 34556789888766655 36788999999999999964
No 175
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=26.50 E-value=96 Score=25.36 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=29.7
Q ss_pred hhhcCCCccEEEeeeCC---C-----chhHhHHHHHHC-CCeEEEeeec
Q 048651 42 ETCTTSNYDFVNLAFCP---P-----LEIIDIKSCQAK-GVKVMLSIEG 81 (134)
Q Consensus 42 ~~C~~~~ydiV~laF~~---P-----~~~~dI~~CQ~~-GkkVlLSlGG 81 (134)
+++.+.+.|||++|+-. | .+.+.|+++.++ |+.|+.|-|=
T Consensus 84 ~~a~~~g~~Vin~S~g~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN 132 (275)
T cd05562 84 RALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGN 132 (275)
T ss_pred HHHHHcCCCEEEecccccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCC
Confidence 34556789999988762 2 266778888887 9999999863
No 176
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=26.49 E-value=92 Score=26.44 Aligned_cols=45 Identities=13% Similarity=0.265 Sum_probs=31.9
Q ss_pred chhhhhcCCCccEEEeeeC--CCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 39 TFMETCTTSNYDFVNLAFC--PPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~--~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
++.+.....++++.+..-+ +|. +.+-++.+++.+.-++++|||+.
T Consensus 42 ~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 91 (375)
T cd08194 42 KLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGS 91 (375)
T ss_pred HHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCch
Confidence 3555555556666655434 454 66778888899999999999985
No 177
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=26.35 E-value=1e+02 Score=23.52 Aligned_cols=42 Identities=7% Similarity=0.059 Sum_probs=31.2
Q ss_pred hhhhhcCCCccEEEeeeCCCc-------------------hhHhHHHHHHCCCeEEEeeec
Q 048651 40 FMETCTTSNYDFVNLAFCPPL-------------------EIIDIKSCQAKGVKVMLSIEG 81 (134)
Q Consensus 40 L~~~C~~~~ydiV~laF~~P~-------------------~~~dI~~CQ~~GkkVlLSlGG 81 (134)
....+...+.|||++||-.+. +...++.+.++|+.|+.|-|=
T Consensus 95 ~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN 155 (267)
T cd04848 95 AYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGN 155 (267)
T ss_pred HHHHHHhCCCeEEEccCCCCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCC
Confidence 334456778999999998321 556788888999888888773
No 178
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=26.34 E-value=1.9e+02 Score=24.32 Aligned_cols=55 Identities=15% Similarity=0.071 Sum_probs=33.3
Q ss_pred eeeCCCc---hhHhHHHHHHC-CCeEEEeeecCCcccccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecCC
Q 048651 54 LAFCPPL---EIIDIKSCQAK-GVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIEG 129 (134)
Q Consensus 54 laF~~P~---~~~dI~~CQ~~-GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE~ 129 (134)
+.|-+|. +.++|+...++ ++.|+.||.|. +.++-.++|..+- ++..|++++++-.
T Consensus 77 ~g~~n~g~~~~~~~i~~~~~~~~~pvi~si~g~-------~~~~~~~~a~~~~--------------~~gad~iElN~s~ 135 (325)
T cd04739 77 YGRYNLGPEEYLELIRRAKRAVSIPVIASLNGV-------SAGGWVDYARQIE--------------EAGADALELNIYA 135 (325)
T ss_pred ccccCcCHHHHHHHHHHHHhccCCeEEEEeCCC-------CHHHHHHHHHHHH--------------hcCCCEEEEeCCC
Confidence 4555664 55677766544 78999999763 2333334443332 2237899998853
No 179
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=26.23 E-value=89 Score=26.62 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=32.6
Q ss_pred chhhhhcCCCccEEEeeeC--CCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 39 TFMETCTTSNYDFVNLAFC--PPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~--~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
++...+...++++.+..=+ +|. +.+-++.+++.+.-++++|||+.
T Consensus 48 ~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGS 97 (379)
T TIGR02638 48 KVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGS 97 (379)
T ss_pred HHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChH
Confidence 4666666666776655434 454 55677888899999999999984
No 180
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=25.95 E-value=1.8e+02 Score=18.52 Aligned_cols=48 Identities=23% Similarity=0.292 Sum_probs=32.3
Q ss_pred CCchhHhHHHHHHCC-CeEEEeeecCCc-ccccC-CHHHHHHHHHHHHHhh
Q 048651 58 PPLEIIDIKSCQAKG-VKVMLSIEGGAG-NYYLS-FSEDARQVADYLWNNF 105 (134)
Q Consensus 58 ~P~~~~dI~~CQ~~G-kkVlLSlGG~~g-~~~l~-s~~~A~~fA~~Lw~~f 105 (134)
.|.+..-++.+++.| .-..+|=.|+++ -+.|. +.++++++++.+=..|
T Consensus 33 ~~~i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~~~~ 83 (85)
T PF08544_consen 33 TPEIDELKEAAEENGALGAKMSGSGGGPTVFALCKDEDDAERVAEALREHY 83 (85)
T ss_dssp HHHHHHHHHHHHHTTESEEEEETTSSSSEEEEEESSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCCceecCCCCCCCeEEEEECCHHHHHHHHHHHHHhC
Confidence 355777788888999 444444333344 37777 8888898888875443
No 181
>PF03971 IDH: Monomeric isocitrate dehydrogenase; InterPro: IPR004436 This family of enzymes catalyses the NADP(+)-dependent oxidative decarboxylation of isocitrate to form 2-oxoglutarate, CO2, and NADPH within the Krebs cycle (1.1.1.42 from EC). Thus this enzyme supplies the cell with a key intermediate in energy metabolism, and precursors for biosynthetic pathways. The activity of this enzyme, which is controlled by phosphorylation, helps regulate carbon flux between the Krebs cycle and the glyoxylate bypass, which is an alternate route that accumulates carbon for biosynthesis when acetate is the sole carbon source for growth []. The phosphorylation state of this enzyme is controlled by isocitrate dehydrogenase kinase/phosphatase. This family has been found in a number of bacterial species including Azotobacter vinelandii, Corynebacterium glutamicum, Rhodomicrobium vannielii, and Neisseria meningitidis. The structure of isocitrate dehydrogenase from Azotobacter vinelandii (P16100 from SWISSPROT) has been determined []. This molecule consists of two distinct domains, a small domain and a large domain, with a folding topology similar to that of dimeric isocitrate dehydrogenase from Escherichia coli (P08200 from SWISSPROT). The structure of the large domain repeats a motif observed in the dimeric enzyme. Such a fusional structure by domain duplication enables a single polypeptide chain to form a structure at the catalytic site that is homologous to the dimeric enzyme, the catalytic site of which is located at the interface of two identical subunits.; GO: 0004450 isocitrate dehydrogenase (NADP+) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process; PDB: 1ITW_D 1J1W_A 3MBC_A 2B0T_A.
Probab=25.83 E-value=76 Score=30.30 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=24.8
Q ss_pred hhhhhcCCCccEEEeeeC---CCchhHhHHHHHHCCCeE
Q 048651 40 FMETCTTSNYDFVNLAFC---PPLEIIDIKSCQAKGVKV 75 (134)
Q Consensus 40 L~~~C~~~~ydiV~laF~---~P~~~~dI~~CQ~~GkkV 75 (134)
|.+...++.-+||-|-=+ -|++.+.|++.|+||..|
T Consensus 65 LGeL~~~peANIIKLPNISASiPQL~aaI~ELQ~kGy~i 103 (735)
T PF03971_consen 65 LGELAKTPEANIIKLPNISASIPQLKAAIKELQSKGYDI 103 (735)
T ss_dssp HHHHTTSTT-EEEE-----B-CCCCHHHHHHHHHTTS--
T ss_pred HHHHhCCCCCcEeeCCcccccHHHHHHHHHHHHhcCCCC
Confidence 566666888898865333 599999999999999875
No 182
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=25.81 E-value=1e+02 Score=26.09 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=31.2
Q ss_pred chhhhhcCCCccEEEeeeC--CCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 39 TFMETCTTSNYDFVNLAFC--PPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~--~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
++.+.....++++.++.-+ +|. +.+-++.+++.+.-++++|||+.
T Consensus 43 ~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS 92 (370)
T cd08192 43 RVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGS 92 (370)
T ss_pred HHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCch
Confidence 3455444445666554333 454 66777888899999999999985
No 183
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=25.73 E-value=1.2e+02 Score=23.91 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=29.1
Q ss_pred CCccEEEeeeCCC-----chhHhHHHHHHCCCeEEEeeecC
Q 048651 47 SNYDFVNLAFCPP-----LEIIDIKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 47 ~~ydiV~laF~~P-----~~~~dI~~CQ~~GkkVlLSlGG~ 82 (134)
...|||++||-.+ .+..-++.++++|+.|+.|-|=.
T Consensus 118 ~~~~Iin~S~G~~~~~~~~~~~~~~~~~~~gvlvV~aaGN~ 158 (264)
T cd07481 118 LAPDVINNSWGGPSGDNEWLQPAVAAWRAAGIFPVFAAGND 158 (264)
T ss_pred cCCeEEEeCCCcCCCCchHHHHHHHHHHHCCCEEEEECCCC
Confidence 5689999999843 26677899999999999998643
No 184
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=25.52 E-value=1.7e+02 Score=24.49 Aligned_cols=53 Identities=17% Similarity=0.117 Sum_probs=32.6
Q ss_pred eeCCCc---hhHhHHHHHHC-CCeEEEeeecCCcccccCCHHHHHHHHHHHHHhhCCCCCCCcCCCCcccceeeeecC
Q 048651 55 AFCPPL---EIIDIKSCQAK-GVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLGGQSSSRPLGNAVLDGIDFGIE 128 (134)
Q Consensus 55 aF~~P~---~~~dI~~CQ~~-GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f~~g~s~~RPfg~~~lDG~D~DiE 128 (134)
.+-+|. +.+.|+..+++ ++.|++||+|.+ .++..++|..+= ++..|++++++-
T Consensus 80 gl~n~g~d~~~~~i~~~~~~~~~pvi~sI~g~~-------~~e~~~~a~~~~--------------~agad~ielN~s 136 (334)
T PRK07565 80 AKFYVGPEEYLELIRRAKEAVDIPVIASLNGSS-------AGGWVDYARQIE--------------QAGADALELNIY 136 (334)
T ss_pred hccCcCHHHHHHHHHHHHHhcCCcEEEEeccCC-------HHHHHHHHHHHH--------------HcCCCEEEEeCC
Confidence 444664 45677666543 689999998843 334445554442 223788888774
No 185
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=25.51 E-value=1.2e+02 Score=23.97 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=29.3
Q ss_pred hcCCCccEEEeeeCC-----C----------chhHhHHHHHHCCCeEEEeeecC
Q 048651 44 CTTSNYDFVNLAFCP-----P----------LEIIDIKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 44 C~~~~ydiV~laF~~-----P----------~~~~dI~~CQ~~GkkVlLSlGG~ 82 (134)
+...+.+||++||-. + .+...|.+++++|+.|+.|-|=.
T Consensus 102 a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~ 155 (294)
T cd07482 102 AADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGND 155 (294)
T ss_pred HHHCCCCEEEeCCccCCCCCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCC
Confidence 345579999999982 1 15667888999999999888654
No 186
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=25.47 E-value=97 Score=26.31 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=31.2
Q ss_pred chhhhhcCCCccEEEeeeC--CCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 39 TFMETCTTSNYDFVNLAFC--PPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~--~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
++.+.....+.++.+..=+ +|. +.+-++.+++.+.-+++++||+.
T Consensus 45 ~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS 94 (380)
T cd08185 45 RVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGS 94 (380)
T ss_pred HHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 3455554556666654333 454 55667888999999999999985
No 187
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=25.28 E-value=1.1e+02 Score=24.86 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=29.4
Q ss_pred hcCCCccEEEeeeCCC-------chhHhHHHHHHCCCeEEEeeecC
Q 048651 44 CTTSNYDFVNLAFCPP-------LEIIDIKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 44 C~~~~ydiV~laF~~P-------~~~~dI~~CQ~~GkkVlLSlGG~ 82 (134)
+...+.+||++||-.+ .+...+..+.++|+.|+.|-|-.
T Consensus 169 a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~ 214 (307)
T cd04852 169 AIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNS 214 (307)
T ss_pred HHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCC
Confidence 3456789999999832 25666778889999999988754
No 188
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=25.04 E-value=99 Score=26.21 Aligned_cols=45 Identities=11% Similarity=0.265 Sum_probs=30.8
Q ss_pred chhhhhcCCCccEEEeeeC--CCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 39 TFMETCTTSNYDFVNLAFC--PPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~--~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
++.......++++.+..-+ +|. +.+-++.+++.+..++++|||+.
T Consensus 45 ~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs 94 (376)
T cd08193 45 PLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGS 94 (376)
T ss_pred HHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCch
Confidence 4555554455666543323 454 66778888899999999999985
No 189
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=24.87 E-value=1e+02 Score=26.64 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=39.5
Q ss_pred cCCCccEEEeeeC-CCchhHhH-HHHHHCCCeEEEeeecCCcccccCCHHHHHHHHHHHHHhhCC-CC
Q 048651 45 TTSNYDFVNLAFC-PPLEIIDI-KSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFLG-GQ 109 (134)
Q Consensus 45 ~~~~ydiV~laF~-~P~~~~dI-~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f~~-g~ 109 (134)
.++.+|.| .|- .+.....| +.|.+.+|+|++-+||-.--+-+.+.+-......-+|..|.. ||
T Consensus 193 ~~~~i~~V--~ftGs~~~g~~v~~~aa~~~~~~~lelgG~~~~iV~~dAdl~~a~~~i~~~~~~~~GQ 258 (455)
T cd07093 193 AHPDVDLI--SFTGETATGRTIMRAAAPNLKPVSLELGGKNPNIVFADADLDRAVDAAVRSSFSNNGE 258 (455)
T ss_pred cCCCccEE--EEECCHHHHHHHHHHHhhcccceEeecCCCCceEECCCCCHHHHHHHHHHHHHhccCC
Confidence 34556655 344 23344444 445667999999999987777776654444445566777765 54
No 190
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=24.66 E-value=26 Score=26.96 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=18.0
Q ss_pred hhHhHHHHHHCCCeEEEeeecCCcc
Q 048651 61 EIIDIKSCQAKGVKVMLSIEGGAGN 85 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSlGG~~g~ 85 (134)
+...+..| .+.-|+-|+||++|+
T Consensus 76 ir~~le~~--d~~~i~~slgGGTGs 98 (192)
T smart00864 76 IREELEGA--DGVFITAGMGGGTGT 98 (192)
T ss_pred HHHHhcCC--CEEEEeccCCCCccc
Confidence 44555666 889999999999876
No 191
>PRK10785 maltodextrin glucosidase; Provisional
Probab=24.54 E-value=77 Score=29.04 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=17.3
Q ss_pred hhHhHHHHHHCCCeEEEee
Q 048651 61 EIIDIKSCQAKGVKVMLSI 79 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSl 79 (134)
|.+=|+.|+++|.||+|-+
T Consensus 228 f~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 228 LLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHHCCCEEEEEE
Confidence 7888999999999999975
No 192
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=24.40 E-value=1.1e+02 Score=21.64 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=30.6
Q ss_pred chhhhhcCCCccEEEeeeCC-----C-chhHhHHHHHHCCCeEEEe
Q 048651 39 TFMETCTTSNYDFVNLAFCP-----P-LEIIDIKSCQAKGVKVMLS 78 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~~-----P-~~~~dI~~CQ~~GkkVlLS 78 (134)
.|.+.|..+.+|+|++.=++ | .+..-++.|+.+|++|..-
T Consensus 56 ~ll~~~~~g~~~~ivv~~~~Rl~R~~~~~~~~~~~l~~~gi~l~~~ 101 (148)
T smart00857 56 RLLADLRAGDIDVLVVYKLDRLGRSLRDLLALLELLEKKGVRLVSV 101 (148)
T ss_pred HHHHHHHcCCCCEEEEeccchhhCcHHHHHHHHHHHHHCCCEEEEC
Confidence 46677778899999987773 3 2666789999999987743
No 193
>PRK06247 pyruvate kinase; Provisional
Probab=24.23 E-value=2.3e+02 Score=25.78 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=30.9
Q ss_pred hhHhHHHHHHCCCeEEEeeecCC--cccccCCHHHHHHHHHHHHH
Q 048651 61 EIIDIKSCQAKGVKVMLSIEGGA--GNYYLSFSEDARQVADYLWN 103 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSlGG~~--g~~~l~s~~~A~~fA~~Lw~ 103 (134)
.+.-|+.|.+.||.|+.+-==-. -....+|.+++.++|+-+.+
T Consensus 257 qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEvtDVaNAV~d 301 (476)
T PRK06247 257 QKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEVSDVATAVLD 301 (476)
T ss_pred HHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchhHHHHHHHHh
Confidence 34557999999999998632211 12458889999999877765
No 194
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=24.18 E-value=1.3e+02 Score=23.42 Aligned_cols=39 Identities=8% Similarity=0.012 Sum_probs=29.7
Q ss_pred hcCCCccEEEeeeCCC----chhHhHHHHHHCCCeEEEeeecC
Q 048651 44 CTTSNYDFVNLAFCPP----LEIIDIKSCQAKGVKVMLSIEGG 82 (134)
Q Consensus 44 C~~~~ydiV~laF~~P----~~~~dI~~CQ~~GkkVlLSlGG~ 82 (134)
+...+++||++||-.+ .+.+.++++..+|+.|+.|-|=.
T Consensus 116 a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~~g~ivV~aaGN~ 158 (259)
T cd07473 116 AVDMGAKIINNSWGGGGPSQALRDAIARAIDAGILFVAAAGND 158 (259)
T ss_pred HHHCCCeEEEeCCCCCCCCHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 3456789999998843 37778888888888888887644
No 195
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=24.05 E-value=1.2e+02 Score=26.06 Aligned_cols=35 Identities=23% Similarity=0.172 Sum_probs=27.2
Q ss_pred CCCccEEEeeeCCCc--------h-hHhHHHHHHCCCeEEE--eeecCC
Q 048651 46 TSNYDFVNLAFCPPL--------E-IIDIKSCQAKGVKVML--SIEGGA 83 (134)
Q Consensus 46 ~~~ydiV~laF~~P~--------~-~~dI~~CQ~~GkkVlL--SlGG~~ 83 (134)
...||+++| +|. + .++|+..+++|+||+- |+|-..
T Consensus 62 ~~~~d~vVI---D~~~~g~~~~~fs~~~i~~Lk~~g~~viaYlSvGe~E 107 (315)
T TIGR01370 62 TSPFELVVI---DYSKDGTEDGTYSPEEIVRAAAAGRWPIAYLSIGAAE 107 (315)
T ss_pred ccCCCEEEE---ccccccCcccCCCHHHHHHHHhCCcEEEEEEEchhcc
Confidence 347999998 554 2 5689999999999984 888753
No 196
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=23.83 E-value=1.3e+02 Score=21.23 Aligned_cols=60 Identities=10% Similarity=-0.045 Sum_probs=38.4
Q ss_pred CceEEEccCCCCCCchhhhhcCCCccEEEeeeCCCchhH---hHHHHHHCCCeEEEeeecCCc
Q 048651 25 SGITIYWVQNGIQSTFMETCTTSNYDFVNLAFCPPLEII---DIKSCQAKGVKVMLSIEGGAG 84 (134)
Q Consensus 25 ~~i~~YWGq~~~~~~L~~~C~~~~ydiV~laF~~P~~~~---dI~~CQ~~GkkVlLSlGG~~g 84 (134)
+-.+.++.....+..+...=...++|+|-+|...++... -++..++.+..+.+-+||...
T Consensus 16 g~~v~~~~~~~~~~~~~~~~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~ 78 (127)
T cd02068 16 GFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHA 78 (127)
T ss_pred CCeeeecCCCCHHHHHHHHHHhcCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcch
Confidence 355667776554445555422268999999988665433 344445567678888999753
No 197
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.50 E-value=3.4e+02 Score=20.70 Aligned_cols=59 Identities=15% Similarity=0.036 Sum_probs=40.6
Q ss_pred cCCCccEEEeeeCCCc-hhHhHHHHHHCCCeEEEeeecCC---------cccccCCHHHHHHHHHHHHHh
Q 048651 45 TTSNYDFVNLAFCPPL-EIIDIKSCQAKGVKVMLSIEGGA---------GNYYLSFSEDARQVADYLWNN 104 (134)
Q Consensus 45 ~~~~ydiV~laF~~P~-~~~dI~~CQ~~GkkVlLSlGG~~---------g~~~l~s~~~A~~fA~~Lw~~ 104 (134)
.+.++|-|++.-.++. +.+.++.++++|++|++- +... ........+.++..+++|.+.
T Consensus 54 ~~~~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~-~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~ 122 (271)
T cd06312 54 IAAKPDGIVVTIPDPDALDPAIKRAVAAGIPVISF-NAGDPKYKELGALAYVGQDEYAAGEAAGERLAEL 122 (271)
T ss_pred HHhCCCEEEEeCCChHHhHHHHHHHHHCCCeEEEe-CCCCCccccccceEEeccChHHHHHHHHHHHHHh
Confidence 3458999888666543 556789999999887764 3221 123445567888899999984
No 198
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.50 E-value=1.3e+02 Score=18.94 Aligned_cols=26 Identities=12% Similarity=0.335 Sum_probs=19.1
Q ss_pred EEEeeeC--CCchhHhHHHHHHCCCeEE
Q 048651 51 FVNLAFC--PPLEIIDIKSCQAKGVKVM 76 (134)
Q Consensus 51 iV~laF~--~P~~~~dI~~CQ~~GkkVl 76 (134)
+|.+|+- .|.+.+-++.++++|.+|+
T Consensus 51 ~i~iS~sg~t~~~~~~~~~a~~~g~~ii 78 (87)
T cd04795 51 VIALSYSGRTEELLAALEIAKELGIPVI 78 (87)
T ss_pred EEEEECCCCCHHHHHHHHHHHHcCCeEE
Confidence 4555555 3567888899999998875
No 199
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=23.48 E-value=1.4e+02 Score=23.40 Aligned_cols=55 Identities=18% Similarity=0.237 Sum_probs=39.1
Q ss_pred chhhhhcCCCccEEEeeeCCCc--------hhHhHHHHHHCCCeEEEeeecCC-cccccCCHHH
Q 048651 39 TFMETCTTSNYDFVNLAFCPPL--------EIIDIKSCQAKGVKVMLSIEGGA-GNYYLSFSED 93 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~~P~--------~~~dI~~CQ~~GkkVlLSlGG~~-g~~~l~s~~~ 93 (134)
.|++.-.++++..|+|-.-.|. +...|+..++.||+|+-...|.. +.|.+.+..+
T Consensus 37 ~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~~~sggy~lasaad 100 (222)
T cd07018 37 ALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADGYSQGQYYLASAAD 100 (222)
T ss_pred HHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCCCCchhhhhhhhCC
Confidence 3555545778888998776553 66677777778999987776653 5688877654
No 200
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=23.05 E-value=86 Score=26.08 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=9.0
Q ss_pred HHhhcCCCCC-ceEEEcc
Q 048651 16 LKLMTGDDAS-GITIYWV 32 (134)
Q Consensus 16 ~~~~~~~~~~-~i~~YWG 32 (134)
|..+...... -=.|||-
T Consensus 15 l~~~~~~~~~~~~~VyWN 32 (233)
T KOG3858|consen 15 LCPLGLAAGKNLHPVYWN 32 (233)
T ss_pred hcccccCccccccceEec
Confidence 3333333333 3589995
No 201
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=22.82 E-value=2.5e+02 Score=18.94 Aligned_cols=54 Identities=13% Similarity=0.111 Sum_probs=34.4
Q ss_pred ccEEEeeeCCCchhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHHHHHH
Q 048651 49 YDFVNLAFCPPLEIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLW 102 (134)
Q Consensus 49 ydiV~laF~~P~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw 102 (134)
+.++.--|-+|.+.+.+..|+++|++|=|=+++..+.......+....+.+.+.
T Consensus 12 i~i~~~~~~~~~i~~~l~~~~~~gv~v~ii~~~~~~~~~~~~~~~~~~~~~~~~ 65 (126)
T PF13091_consen 12 IWIASPYITDPDIIKALLDAAKRGVKVRIIVDSNQDDSEAINLASLKELRELLK 65 (126)
T ss_dssp EEEEESSS-SCHHHHHHHHHHHTT-EEEEEEECGGGHHCCCSHHHHHHHHHHHH
T ss_pred EEEEEEecCcHHHHHHHHHHHHCCCeEEEEECCCccccchhhhHHHHHHHhhhc
Confidence 333333233677888888899999999999998766444444555555555444
No 202
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=22.78 E-value=1.3e+02 Score=25.06 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=28.4
Q ss_pred chhhhhcCCCccEEEeeeCCCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 39 TFMETCTTSNYDFVNLAFCPPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
.+.+...... ++..+-..+|. +.+-++.+++.+.-+++++||+.
T Consensus 43 ~v~~~l~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs 89 (339)
T cd08173 43 KVEALLEDEG-EVDVVIVEDATYEEVEKVESSARDIGADFVIGVGGGR 89 (339)
T ss_pred HHHHHHHhcC-CeEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEeCCch
Confidence 3444554434 44333233665 55667778888999999999985
No 203
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.69 E-value=1.2e+02 Score=22.64 Aligned_cols=27 Identities=11% Similarity=0.062 Sum_probs=19.6
Q ss_pred EEeeeC--CCchhHhHHHHHHCCCeEEEe
Q 048651 52 VNLAFC--PPLEIIDIKSCQAKGVKVMLS 78 (134)
Q Consensus 52 V~laF~--~P~~~~dI~~CQ~~GkkVlLS 78 (134)
|.+|+- .+.+.+-++.++++|.||+.=
T Consensus 77 I~iS~sG~t~~~i~~~~~ak~~g~~ii~I 105 (179)
T TIGR03127 77 IAISGSGETESLVTVAKKAKEIGATVAAI 105 (179)
T ss_pred EEEeCCCCcHHHHHHHHHHHHCCCeEEEE
Confidence 455554 355778889999999998653
No 204
>COG0696 GpmI Phosphoglyceromutase [Carbohydrate transport and metabolism]
Probab=22.61 E-value=1.4e+02 Score=27.68 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=26.7
Q ss_pred cCCCccEEEeeeCCCc---------------------hhHhHHHHHHCCCeEEEe
Q 048651 45 TTSNYDFVNLAFCPPL---------------------EIIDIKSCQAKGVKVMLS 78 (134)
Q Consensus 45 ~~~~ydiV~laF~~P~---------------------~~~dI~~CQ~~GkkVlLS 78 (134)
..++||+|++-|++|. +..-+..|++.|-.++|-
T Consensus 385 ~~g~~D~iV~N~ANpDMVGHTG~~eatiKAvEavD~~lg~ivd~~~~~gg~~~iT 439 (509)
T COG0696 385 EKGKYDLIVLNYANPDMVGHTGNFEATIKAVEAVDECLGRIVDAVKKNGGTLLIT 439 (509)
T ss_pred hCCCCCEEEEecCCCccCcccccHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEe
Confidence 5778999999999884 566677778887777764
No 205
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=22.32 E-value=1.5e+02 Score=22.40 Aligned_cols=40 Identities=10% Similarity=0.025 Sum_probs=27.7
Q ss_pred CchhhhhcCCCccEEEeeeC--CC-----------chhHhHHHHHHCCCeEEE
Q 048651 38 STFMETCTTSNYDFVNLAFC--PP-----------LEIIDIKSCQAKGVKVML 77 (134)
Q Consensus 38 ~~L~~~C~~~~ydiV~laF~--~P-----------~~~~dI~~CQ~~GkkVlL 77 (134)
.+|.+.+...+.|+|+|.+- |. .+.+=|+.++++|.+++|
T Consensus 61 ~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~il 113 (191)
T PRK10528 61 ARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLL 113 (191)
T ss_pred HHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 35777776667899999888 21 155667778887766654
No 206
>PRK10206 putative oxidoreductase; Provisional
Probab=22.17 E-value=1.6e+02 Score=24.76 Aligned_cols=40 Identities=15% Similarity=0.157 Sum_probs=27.6
Q ss_pred chhhhhcCCCccEEEeeeCC---------------------Cc------hhHhHHHHHHCCCeEEEe
Q 048651 39 TFMETCTTSNYDFVNLAFCP---------------------PL------EIIDIKSCQAKGVKVMLS 78 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~~---------------------P~------~~~dI~~CQ~~GkkVlLS 78 (134)
++.+..++.++|+|.|+-.+ |- ..+=++.|+++|+++...
T Consensus 55 ~~~ell~~~~iD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~ 121 (344)
T PRK10206 55 DLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPY 121 (344)
T ss_pred CHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEE
Confidence 57777777899999997662 21 344567778888886543
No 207
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=22.14 E-value=1.3e+02 Score=25.92 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=31.2
Q ss_pred chhhhhcCCCccEEEeeeC--CCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 39 TFMETCTTSNYDFVNLAFC--PPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~--~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
++.+.....+++++..+=+ +|. +.+-++.+++.+..+++++||+.
T Consensus 50 ~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS 99 (383)
T PRK09860 50 DVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGS 99 (383)
T ss_pred HHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCch
Confidence 4444444445565555444 464 66778888999999999999985
No 208
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=22.09 E-value=1e+02 Score=26.06 Aligned_cols=45 Identities=9% Similarity=0.177 Sum_probs=31.2
Q ss_pred chhhhhcCCCccEEEeeeC--CCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 39 TFMETCTTSNYDFVNLAFC--PPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~--~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
.+.+.....++.+.+..-+ +|. +.+-++.+++.+.-+++++||+.
T Consensus 45 ~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS 94 (357)
T cd08181 45 DVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGS 94 (357)
T ss_pred HHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCch
Confidence 3454444445666554433 565 56678888999999999999985
No 209
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=22.06 E-value=1.2e+02 Score=26.23 Aligned_cols=43 Identities=26% Similarity=0.359 Sum_probs=30.7
Q ss_pred chhhhhcCCCccEEEeeeC------CCchhHhHHHHHHCCCeEE--EeeecC
Q 048651 39 TFMETCTTSNYDFVNLAFC------PPLEIIDIKSCQAKGVKVM--LSIEGG 82 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~------~P~~~~dI~~CQ~~GkkVl--LSlGG~ 82 (134)
.+.+. .+..+|+++|--- .|...++|+.....|+|++ ||||=+
T Consensus 35 ~~~~i-~~~~f~llVVDps~~g~~~~~~~~eelr~~~~gg~~pIAYlsIg~a 85 (300)
T COG2342 35 YINEI-LNSPFDLLVVDPSYCGPFNTPWTIEELRTKADGGVKPIAYLSIGEA 85 (300)
T ss_pred hHHHH-hcCCCcEEEEeccccCCCCCcCcHHHHHHHhcCCeeEEEEEechhh
Confidence 45554 3568999888441 1347899999999998887 678754
No 210
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=21.93 E-value=1e+02 Score=27.78 Aligned_cols=19 Identities=16% Similarity=0.273 Sum_probs=17.5
Q ss_pred hhHhHHHHHHCCCeEEEee
Q 048651 61 EIIDIKSCQAKGVKVMLSI 79 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSl 79 (134)
|.+=|++|+++|.||+|=+
T Consensus 77 ~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 77 FEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHHHHHHHCCCEEEEEE
Confidence 8888999999999999975
No 211
>cd07099 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.
Probab=21.75 E-value=1.5e+02 Score=25.61 Aligned_cols=79 Identities=16% Similarity=0.186 Sum_probs=47.2
Q ss_pred CceEEEccCCCCCCchhhhhcCCCccEEEeeeC-CCchhHhHHH-HHHCCCeEEEeeecCCcccccCCHHHHHHHHHHHH
Q 048651 25 SGITIYWVQNGIQSTFMETCTTSNYDFVNLAFC-PPLEIIDIKS-CQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLW 102 (134)
Q Consensus 25 ~~i~~YWGq~~~~~~L~~~C~~~~ydiV~laF~-~P~~~~dI~~-CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw 102 (134)
+-+.+-.|.. ...+...+..+|.| +|- .+.....|.. |.++.|+|.|.+||-.-.+-+++.+-....-.-+|
T Consensus 177 g~~~vv~g~~----~~~~~l~~~~vd~V--~ftGs~~~g~~i~~~aa~~~~~~~lelgG~~p~iV~~dadl~~a~~~i~~ 250 (453)
T cd07099 177 GVLQVVTGDG----ATGAALIDAGVDKV--AFTGSVATGRKVMAAAAERLIPVVLELGGKDPMIVLADADLERAAAAAVW 250 (453)
T ss_pred CeEEEEeCCc----hHHHHHhcCCCCEE--EEECCHHHHHHHHHHHHhcCCeEEEECCCCCeEEECCCCCHHHHHHHHHH
Confidence 4455555532 22333333346776 344 3446666544 55678999999999877777777543344445577
Q ss_pred HhhC-CCC
Q 048651 103 NNFL-GGQ 109 (134)
Q Consensus 103 ~~f~-~g~ 109 (134)
..|. .||
T Consensus 251 ~~~~~~GQ 258 (453)
T cd07099 251 GAMVNAGQ 258 (453)
T ss_pred HHHhcCCC
Confidence 7776 344
No 212
>PF02598 Methyltrn_RNA_3: Putative RNA methyltransferase; InterPro: IPR003750 This entry describes proteins of unknown function.; PDB: 1K3R_B.
Probab=21.70 E-value=71 Score=26.92 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=21.9
Q ss_pred eEEEccCCCC-CCchhhhhc----CCCccEEEeeeCC--CchhHhHHHHHHCCCeEEEeeecCCc
Q 048651 27 ITIYWVQNGI-QSTFMETCT----TSNYDFVNLAFCP--PLEIIDIKSCQAKGVKVMLSIEGGAG 84 (134)
Q Consensus 27 i~~YWGq~~~-~~~L~~~C~----~~~ydiV~laF~~--P~~~~dI~~CQ~~GkkVlLSlGG~~g 84 (134)
...|||-.-. ..+|++... ..+||.++..=-. +.-....+..+.+.+.+||=+||+.+
T Consensus 176 ~g~YwGY~VR~a~sl~~v~~~~~~~~GYd~~IgtS~~G~~~~~~~~~~~~~~~~~~LiVFGg~~~ 240 (291)
T PF02598_consen 176 AGYYWGYSVRIASSLSEVFTECPYPEGYDLIIGTSERGEPISSSELEIKSSSFKHLLIVFGGWSP 240 (291)
T ss_dssp --S----EEEEECEHHHHHHHC------SEEEEE-TTS-BTTTSHHHHHHHT-SEEEEE-----S
T ss_pred CCccCCeEEEEeCCHHHHHhcCCcccccceEEEECCCCeeCchhhcccccCCCCcEEEEEecCHH
Confidence 4569997654 455665543 3568987764331 11111122224589999999998854
No 213
>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.
Probab=21.64 E-value=1.4e+02 Score=25.94 Aligned_cols=64 Identities=17% Similarity=0.125 Sum_probs=41.2
Q ss_pred hcCCCccEEEeeeCC-CchhHhH-HHHHHCCCeEEEeeecCCcccccCCHHHHHHHHHHHHHhhC-CCC
Q 048651 44 CTTSNYDFVNLAFCP-PLEIIDI-KSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFL-GGQ 109 (134)
Q Consensus 44 C~~~~ydiV~laF~~-P~~~~dI-~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f~-~g~ 109 (134)
+..+.+|.| +|-. +.....| +.+.+++|+|++-+||-.-.+-+++.+-......-+|..|. .||
T Consensus 194 ~~~~~i~~V--~ftGs~~~g~~v~~~aa~~~~~~~lelgG~~~~iV~~dAdl~~aa~~i~~~~~~~~GQ 260 (457)
T cd07114 194 VEHPLVAKI--AFTGGTETGRHIARAAAENLAPVTLELGGKSPNIVFDDADLDAAVNGVVAGIFAAAGQ 260 (457)
T ss_pred hcCCCCCEE--EEECCHHHHHHHHHHHHhcCCeEEEecCCCCeeEECCCCCHHHHHHHHHHHHHhccCC
Confidence 334556655 4442 3444444 33556789999999998877777776555555566777776 454
No 214
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=21.52 E-value=94 Score=28.19 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=17.6
Q ss_pred hhHhHHHHHHCCCeEEEee
Q 048651 61 EIIDIKSCQAKGVKVMLSI 79 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSl 79 (134)
|++=|+.|+++|.+|+|=+
T Consensus 162 ~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 162 LKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HHHHHHHHHHCCCEEEEEE
Confidence 8889999999999999974
No 215
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=21.49 E-value=52 Score=23.48 Aligned_cols=39 Identities=21% Similarity=0.108 Sum_probs=24.9
Q ss_pred chhhhhcCCCccEEEeeeCC---CchhHhHHHHHHCCCeEEE
Q 048651 39 TFMETCTTSNYDFVNLAFCP---PLEIIDIKSCQAKGVKVML 77 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~~---P~~~~dI~~CQ~~GkkVlL 77 (134)
+|.+.-....+|-|+++... ..+.+=+..|++.|.+|-+
T Consensus 132 ~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 132 DLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp GHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-EEEE
T ss_pred HHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCEEEE
Confidence 45555556789999998652 2377889999999998864
No 216
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=21.43 E-value=1.3e+02 Score=22.47 Aligned_cols=32 Identities=13% Similarity=0.331 Sum_probs=22.8
Q ss_pred cE-EEeeeC--CCchhHhHHHHHHCCCeEEEeeec
Q 048651 50 DF-VNLAFC--PPLEIIDIKSCQAKGVKVMLSIEG 81 (134)
Q Consensus 50 di-V~laF~--~P~~~~dI~~CQ~~GkkVlLSlGG 81 (134)
|+ |.+|+- +|.+.+-++.|+++|.||+.=-+-
T Consensus 103 Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~ 137 (177)
T cd05006 103 DVLIGISTSGNSPNVLKALEAAKERGMKTIALTGR 137 (177)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 44 555555 466889999999999987654443
No 217
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=21.42 E-value=1.4e+02 Score=20.45 Aligned_cols=25 Identities=0% Similarity=-0.100 Sum_probs=22.3
Q ss_pred chhHhHHHHHHCCCeEEEeeecCCc
Q 048651 60 LEIIDIKSCQAKGVKVMLSIEGGAG 84 (134)
Q Consensus 60 ~~~~dI~~CQ~~GkkVlLSlGG~~g 84 (134)
.+.+.++.+++++|.|++-|-+...
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c 29 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDE 29 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCc
Confidence 4788899999999999999999865
No 218
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=21.41 E-value=1.4e+02 Score=25.96 Aligned_cols=44 Identities=11% Similarity=0.191 Sum_probs=30.9
Q ss_pred hhhhhcCCCccEEEeeeC--CCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 40 FMETCTTSNYDFVNLAFC--PPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 40 L~~~C~~~~ydiV~laF~--~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
+.+.....++++.+..=+ +|. +.+-++.+++.+.-++++|||+.
T Consensus 43 v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 91 (414)
T cd08190 43 VLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGS 91 (414)
T ss_pred HHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 444444456666654333 565 66778888999999999999985
No 219
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=21.41 E-value=3.3e+02 Score=19.87 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=49.2
Q ss_pred CceEEEccCCCC--CCchhhhhcCCCccEEEeeeCCCchhHhHHHHHHCCCeEEEeeecC-C-----cccccCCHHHHHH
Q 048651 25 SGITIYWVQNGI--QSTFMETCTTSNYDFVNLAFCPPLEIIDIKSCQAKGVKVMLSIEGG-A-----GNYYLSFSEDARQ 96 (134)
Q Consensus 25 ~~i~~YWGq~~~--~~~L~~~C~~~~ydiV~laF~~P~~~~dI~~CQ~~GkkVlLSlGG~-~-----g~~~l~s~~~A~~ 96 (134)
-.+..+..++.. +.+..+.+.+.++|.|++...++.....++.++.+|++|+. +++. . ..+.....+.+..
T Consensus 30 ~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~l~~~~ip~v~-~~~~~~~~~~~~~v~~d~~~~~~~ 108 (264)
T cd01537 30 YQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPTIVKLARKAGIPVVL-VDRDIPDGDRVPSVGSDNEQAGYL 108 (264)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchhHHHHhhhcCCCEEE-eccCCCCCcccceEecCcHHHHHH
Confidence 345556554322 22333334456899888876655433368899999988875 3333 2 2345566788888
Q ss_pred HHHHHHHh
Q 048651 97 VADYLWNN 104 (134)
Q Consensus 97 fA~~Lw~~ 104 (134)
.++++...
T Consensus 109 ~~~~l~~~ 116 (264)
T cd01537 109 AGEHLAEK 116 (264)
T ss_pred HHHHHHHh
Confidence 88988874
No 220
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=21.11 E-value=1.4e+02 Score=25.55 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=24.9
Q ss_pred CCccEEEeeeC-----CCchhHhHHHHHHCC-CeEEEe
Q 048651 47 SNYDFVNLAFC-----PPLEIIDIKSCQAKG-VKVMLS 78 (134)
Q Consensus 47 ~~ydiV~laF~-----~P~~~~dI~~CQ~~G-kkVlLS 78 (134)
...|+|.+|=. +|.+.+-|+.+++.| ++++|=
T Consensus 78 ~~pd~vtis~~GEPTLy~~L~elI~~~k~~g~~~tflv 115 (296)
T COG0731 78 TEPDHVTISLSGEPTLYPNLGELIEEIKKRGKKTTFLV 115 (296)
T ss_pred CCCCEEEEeCCCCcccccCHHHHHHHHHhcCCceEEEE
Confidence 36788877665 567999999999999 566653
No 221
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=21.03 E-value=1.1e+02 Score=22.39 Aligned_cols=22 Identities=14% Similarity=0.136 Sum_probs=18.7
Q ss_pred HhHHHHHHCCCeEEEeeecCCc
Q 048651 63 IDIKSCQAKGVKVMLSIEGGAG 84 (134)
Q Consensus 63 ~dI~~CQ~~GkkVlLSlGG~~g 84 (134)
+.++.+++++|.|||-++..-.
T Consensus 6 eal~~Ak~~~KpVll~f~a~WC 27 (124)
T cd02955 6 EAFEKARREDKPIFLSIGYSTC 27 (124)
T ss_pred HHHHHHHHcCCeEEEEEccCCC
Confidence 4678899999999999988753
No 222
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=20.87 E-value=90 Score=24.28 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=17.9
Q ss_pred CCchhHhHHHHHHCCCeEEEee
Q 048651 58 PPLEIIDIKSCQAKGVKVMLSI 79 (134)
Q Consensus 58 ~P~~~~dI~~CQ~~GkkVlLSl 79 (134)
.|.-.+.|+.+|++|.+|.++=
T Consensus 22 ~~~~~~ai~~~~~~G~~~~iaT 43 (272)
T PRK10530 22 LPESLEALARAREAGYKVIIVT 43 (272)
T ss_pred CHHHHHHHHHHHHCCCEEEEEc
Confidence 4556788999999999999883
No 223
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=20.79 E-value=1.3e+02 Score=26.50 Aligned_cols=60 Identities=8% Similarity=-0.043 Sum_probs=40.1
Q ss_pred hhcCCCccEEEeeeCCCchhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHHHHHHHhhC
Q 048651 43 TCTTSNYDFVNLAFCPPLEIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYLWNNFL 106 (134)
Q Consensus 43 ~C~~~~ydiV~laF~~P~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~Lw~~f~ 106 (134)
.+.++.+|.|. |-.- .+-.+.|.+.+|++++-+||-.-.+-+.+.+-......-+|..|.
T Consensus 173 L~~~~~V~~V~--FTGs--~~v~~~aa~~~k~~~lElGGk~p~IV~~dADl~~Aa~~iv~~~~~ 232 (439)
T cd07081 173 LMKFPGIGLLL--ATGG--PAVVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVQSIVKSKTF 232 (439)
T ss_pred HHcCCCCCEEE--EECC--HHHHHHHHhcCCCEEEEcCCCCeEEEcCCCCHHHHHHHHHHHHhc
Confidence 34456677664 5421 123567888899999999998888877775544455556777776
No 224
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=20.79 E-value=1.4e+02 Score=21.95 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=22.8
Q ss_pred CCccEEEeeeC---CCchhHhHHHHHHCCCeEEE
Q 048651 47 SNYDFVNLAFC---PPLEIIDIKSCQAKGVKVML 77 (134)
Q Consensus 47 ~~ydiV~laF~---~P~~~~dI~~CQ~~GkkVlL 77 (134)
.+++ |-.+|+ .|.+.+-|..|.++|.+-++
T Consensus 30 ~~~~-v~~afle~~~P~l~~~l~~l~~~G~~~iv 62 (125)
T cd03415 30 LGVP-VYLTYNEYAEPNWRDLLNELLSEGYGHII 62 (125)
T ss_pred cCCc-eEEEEeecCCCCHHHHHHHHHHCCCCEEE
Confidence 4455 568887 69999999999999865433
No 225
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=20.77 E-value=1.5e+02 Score=25.13 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=29.1
Q ss_pred chhhhhcCCCccEEEeeeC-CCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 39 TFMETCTTSNYDFVNLAFC-PPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~-~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
.+.+.+...++.++..-+. +|. +.+-+..+++.+.-+++++||+.
T Consensus 47 ~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGs 95 (366)
T PRK09423 47 RVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGK 95 (366)
T ss_pred HHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 4555555445554322222 454 55667788888999999999985
No 226
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=20.77 E-value=57 Score=26.89 Aligned_cols=58 Identities=10% Similarity=0.150 Sum_probs=30.7
Q ss_pred ceEEEccCCCC---CCchhhhhcCCCccEEEeeeC--CCch---hHhHHHHHHCCCeEEEeeecCC
Q 048651 26 GITIYWVQNGI---QSTFMETCTTSNYDFVNLAFC--PPLE---IIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 26 ~i~~YWGq~~~---~~~L~~~C~~~~ydiV~laF~--~P~~---~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
++.+--+.+-- ...+.+.+.+.++++..+-.. .|.+ .+-.+.++.++..+++++||++
T Consensus 21 ~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~ 86 (250)
T PF13685_consen 21 KVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGT 86 (250)
T ss_dssp EEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcH
Confidence 44444454422 346777788778888755322 3432 2333344456888999999985
No 227
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=20.64 E-value=2.1e+02 Score=23.25 Aligned_cols=40 Identities=18% Similarity=0.246 Sum_probs=27.9
Q ss_pred hhhhhcCCCccEEEeeeCCC--chhHhHHHHHHCCCeEEEee
Q 048651 40 FMETCTTSNYDFVNLAFCPP--LEIIDIKSCQAKGVKVMLSI 79 (134)
Q Consensus 40 L~~~C~~~~ydiV~laF~~P--~~~~dI~~CQ~~GkkVlLSl 79 (134)
|...+..+..|+|.|-.-.+ .+.+-++..|+.|.||++|.
T Consensus 101 l~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~ 142 (253)
T PRK02412 101 IKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSY 142 (253)
T ss_pred HHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEee
Confidence 45555544478888875433 25555677788999999997
No 228
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=20.46 E-value=3.4e+02 Score=22.75 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=16.9
Q ss_pred hhHhHHHHHHCCCeEEEeeecCC
Q 048651 61 EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 61 ~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
+.++|+..+..++.|++||+|..
T Consensus 117 ~~~~l~~~~~~~~plivsi~g~~ 139 (327)
T cd04738 117 VAKRLKKRRPRGGPLGVNIGKNK 139 (327)
T ss_pred HHHHHHHhccCCCeEEEEEeCCC
Confidence 44566655446789999999875
No 229
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=20.38 E-value=2.2e+02 Score=24.26 Aligned_cols=56 Identities=9% Similarity=-0.012 Sum_probs=34.7
Q ss_pred eEEEccCCCCCCchhhhhcCCCccEEEeeeC--CCc---hhHhHHHHHHC---CCeEEEeeecCC
Q 048651 27 ITIYWVQNGIQSTFMETCTTSNYDFVNLAFC--PPL---EIIDIKSCQAK---GVKVMLSIEGGA 83 (134)
Q Consensus 27 i~~YWGq~~~~~~L~~~C~~~~ydiV~laF~--~P~---~~~dI~~CQ~~---GkkVlLSlGG~~ 83 (134)
+.+. ++.-.+..+.+.....+.++.+..-+ +|. +.+-++.+++. +..+++++||+.
T Consensus 29 lvvt-d~~~~~~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGGGS 92 (347)
T cd08184 29 VFFV-DDVFQGKDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGGGS 92 (347)
T ss_pred EEEE-CcchhhhHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCCcH
Confidence 3444 54433344555454446676655433 565 45556677776 899999999984
No 230
>PRK06242 flavodoxin; Provisional
Probab=20.20 E-value=1.3e+02 Score=21.41 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=22.1
Q ss_pred CCccEEEeeeC------CCchhHhHHHHHH-CCCeEEE-eeecCC
Q 048651 47 SNYDFVNLAFC------PPLEIIDIKSCQA-KGVKVML-SIEGGA 83 (134)
Q Consensus 47 ~~ydiV~laF~------~P~~~~dI~~CQ~-~GkkVlL-SlGG~~ 83 (134)
.+||.|++++. .|.+..=|...+. +||+|.+ +-+|+.
T Consensus 42 ~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~~~~k~~~~f~t~g~~ 86 (150)
T PRK06242 42 SEYDLIGFGSGIYFGKFHKSLLKLIEKLPPVSGKKAFIFSTSGLP 86 (150)
T ss_pred hHCCEEEEeCchhcCCcCHHHHHHHHhhhhhcCCeEEEEECCCCC
Confidence 37899999876 2335554555544 6777644 444443
No 231
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=20.13 E-value=2.5e+02 Score=18.86 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=26.9
Q ss_pred chhhhhcCCCccEEEeeeC-----CC----chhHhHHHHHHCCCeEEEe
Q 048651 39 TFMETCTTSNYDFVNLAFC-----PP----LEIIDIKSCQAKGVKVMLS 78 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~-----~P----~~~~dI~~CQ~~GkkVlLS 78 (134)
.|.+.+.......|++-|- |- .+.+-++.|+++|+++.|+
T Consensus 31 ~l~~~~~~~~~~~vvlDls~v~~iDssg~~~l~~~~~~~~~~g~~l~l~ 79 (109)
T cd07041 31 RLLEAISRRRARGVIIDLTGVPVIDSAVARHLLRLARALRLLGARTILT 79 (109)
T ss_pred HHHHHHHHcCCCEEEEECCCCchhcHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 3444454446667777654 32 2777888999999998886
No 232
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=20.09 E-value=1.8e+02 Score=23.41 Aligned_cols=55 Identities=20% Similarity=0.114 Sum_probs=37.0
Q ss_pred hcCCCccEEEeeeCC-CchhHhHHHHHHCCCeEEEeeecCCcccccCCHHHHHHHHHHH
Q 048651 44 CTTSNYDFVNLAFCP-PLEIIDIKSCQAKGVKVMLSIEGGAGNYYLSFSEDARQVADYL 101 (134)
Q Consensus 44 C~~~~ydiV~laF~~-P~~~~dI~~CQ~~GkkVlLSlGG~~g~~~l~s~~~A~~fA~~L 101 (134)
|-++++++|.+=+.+ -++++=++..|++||+|++=+==-.| ++.++.|-+|-...
T Consensus 19 ~les~~~~vflL~~~i~~ik~ivk~lK~~gK~vfiHvDLv~G---l~~~e~~i~fi~~~ 74 (181)
T COG1954 19 ALESESQYVFLLTGHILNIKEIVKKLKNRGKTVFIHVDLVEG---LSNDEVAIEFIKEV 74 (181)
T ss_pred HhcCCCeEEEEEechhhhHHHHHHHHHhCCcEEEEEeHHhcc---cCCchHHHHHHHHh
Confidence 556778887664443 34888899999999999997533222 55666665554433
No 233
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=20.07 E-value=1.4e+02 Score=25.48 Aligned_cols=45 Identities=13% Similarity=0.247 Sum_probs=30.9
Q ss_pred chhhhhcCCCccEEEeeeC--CCc---hhHhHHHHHHCCCeEEEeeecCC
Q 048651 39 TFMETCTTSNYDFVNLAFC--PPL---EIIDIKSCQAKGVKVMLSIEGGA 83 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~--~P~---~~~dI~~CQ~~GkkVlLSlGG~~ 83 (134)
++.+.+...++++.+..=+ +|. +.+-++..++.+.-++++|||+.
T Consensus 49 ~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS 98 (382)
T PRK10624 49 KVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGS 98 (382)
T ss_pred HHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChH
Confidence 4555555556666554323 565 45667778889999999999985
No 234
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=20.00 E-value=1.4e+02 Score=22.30 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=32.7
Q ss_pred chhhhhcCCCccEEEeeeCCCchhHhHHHHHHCCCeEEEeee
Q 048651 39 TFMETCTTSNYDFVNLAFCPPLEIIDIKSCQAKGVKVMLSIE 80 (134)
Q Consensus 39 ~L~~~C~~~~ydiV~laF~~P~~~~dI~~CQ~~GkkVlLSlG 80 (134)
++.+.|.+.++|+|+.+=+.| .-+...+++|+||..-=+
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~---~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGP---NAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHcCCCEEEECccCH---HHHHHHHHcCcEEEecCC
Confidence 478888899999999988766 568889999999987655
Done!