BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048652
(1382 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 180 bits (457), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 161/275 (58%), Gaps = 10/275 (3%)
Query: 587 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLTLL 646
++IDEA Q E S IPL+ G +++GD QLP V S + + +SLF R+
Sbjct: 1587 VIIDEACQCTELSSIIPLRYGG-KRCIMVGDPNQLPPTVLSGAASNFKYNQSLFVRMEK- 1644
Query: 647 NHSKHLLDIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEK-HYLPGTEFGPYTFINI 705
N S +LLD+QYRMHPSIS FP+ +FY+ ++ DG + + H L PY F +I
Sbjct: 1645 NSSPYLLDVQYRMHPSISKFPSSEFYQGRLKDGPGMDILNKRPWHQL--EPLAPYKFFDI 1702
Query: 706 IGGREE--FIYHSCRNMVEVSVVIKILQKLYKAWVGSKQMVS-IGVVSPYTAQVVAIRKK 762
I GR+E S NM E+ V I+++ L++ + IG++SPY Q+ +RK+
Sbjct: 1703 ISGRQEQNAKTMSYTNMEEIRVAIELVDYLFRKFDNKIDFTGKIGIISPYREQMQKMRKE 1762
Query: 763 IGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRC-NTGGSIGFISNPQRVNVALTRAR 821
+ ++ ++DGFQG E++II+IS VR +T S+GF+ + +R+NVALTRA+
Sbjct: 1763 FARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADDTKSSVGFLKDFRRMNVALTRAK 1822
Query: 822 HCLWILGNERTLISSESIWGTLVCDAKARQCFFKA 856
+W+LG++R+L S+ +W L+ DAK R C A
Sbjct: 1823 TSIWVLGHQRSLAKSK-LWRDLIEDAKDRSCLAYA 1856
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 109/330 (33%), Positives = 174/330 (52%), Gaps = 11/330 (3%)
Query: 555 LKDFCFKRASLFFSTAS-SSYKLHSVKIEPLNFLVIDEAAQLKESESTIPLQLAGINHAV 613
++ + A++ F+T S S L + + ++IDEAAQ E + IPL
Sbjct: 454 IRTAILEEAAIVFATLSFSGSALLAKSNRGFDVVIIDEAAQAVEPATLIPLA-TRCKQVF 512
Query: 614 LIGDECQLPAMVESKISDGASFGRSLFERLTLLNHSKHLLDIQYRMHPSISLFPNLQFYR 673
L+GD QLPA V S ++ + +G S+FERL + +L QYRMHP I FP+ QFY
Sbjct: 513 LVGDPKQLPATVISTVAQDSGYGTSMFERLQKAGYPVKMLKTQYRMHPEIRSFPSKQFYE 572
Query: 674 NQILDGANVKSKSYEKHYLPGTEFGPYTFINIIGGREE---FIYHSCRNMVEVSVVIKIL 730
+ DG+++++++ + + FGP+ F +I G+E S N+ EV V+ I
Sbjct: 573 GALEDGSDIEAQT-TRDWHKYRCFGPFCFFDIHEGKESQHPGATGSRVNLDEVEFVLLIY 631
Query: 731 QKLYKAWVGSKQMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQGGEEDI 790
+L + K + ++SPY QV + + + + V + +VDGFQG E+D+
Sbjct: 632 HRLVTMYPELKSSSQLAIISPYNYQVKTFKDRFKEMFGTEAEKVVDINTVDGFQGREKDV 691
Query: 791 IIISTVRCNTGGSIGFISNPQRVNVALTRARHCLWILGNERTLISSESIWGTLVCDAKAR 850
I S VR N G IGF+SN +R+NV +TRA+ + ++G+ TL S+ +W L+ A+ R
Sbjct: 692 AIFSCVRANENGQIGFLSNSRRMNVGITRAKSSVLVVGSAATL-KSDPLWKNLIESAEQR 750
Query: 851 QCFFKADEDRN--LAKARLEVSK--ESVEI 876
FK + N ++ LE K E +EI
Sbjct: 751 NRLFKVSKPLNNFFSEENLETMKLTEDMEI 780
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 155/265 (58%), Gaps = 4/265 (1%)
Query: 587 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERL-TL 645
++IDEAAQ E S IPL+ G V++GD QLP V SK S + +SL+ R+
Sbjct: 1513 VIIDEAAQAVELSSIIPLKY-GCESCVMVGDPNQLPPTVLSKTSAKFGYSQSLYVRMFKQ 1571
Query: 646 LNHSKHLLDIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTEFGPYTFINI 705
N S LL IQYRM+P IS FP+ FY +++LDG N+ S + + + G Y F N+
Sbjct: 1572 HNESACLLSIQYRMNPEISRFPSKFFYNSKLLDGPNM-SAVTSRPWHEDPQLGIYRFFNV 1630
Query: 706 IGGREEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAIRKKIGS 765
G S N+ E S ++ + ++L + ++ IGVV+PY +QV +R +
Sbjct: 1631 HGTEAFSNSKSLYNVEEASFILLLYERLIQCYLNIDFEGKIGVVTPYRSQVQQLRSQFQR 1690
Query: 766 EYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRARHCLW 825
+Y + + + +VDGFQG E+DIII S VR + G IGF+ + +R+NVALTRA+ L+
Sbjct: 1691 KYGSIIFKHLDIHTVDGFQGQEKDIIIFSCVRSSMSGGIGFLQDLRRLNVALTRAKSSLY 1750
Query: 826 ILGNERTLISSESIWGTLVCDAKAR 850
I+GN + L+ E I+ +L+ DAK R
Sbjct: 1751 IVGNSKPLM-QEDIFYSLIEDAKTR 1774
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 23/86 (26%)
Query: 250 LNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLL------------- 296
+NEPQ A++A G L GPPGTGKTKT+ ++ ++L
Sbjct: 1271 VNEPQAYAIYAS------SVNDGFTLIQGPPGTGKTKTILGMIGAVLTSSSQGLQFNVPG 1324
Query: 297 ----RIKCRTLACTPTNVAITELASR 318
K + L C P+N AI E+ R
Sbjct: 1325 QTRKTSKNKILICAPSNAAIDEILLR 1350
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 173/346 (50%), Gaps = 46/346 (13%)
Query: 526 RRSECLSVLRNLWNSLDELNLPCTTSKQLLKDFCFKRASLFFSTASSSYKLHSVKIEPLN 585
R ++ S +R L LDE ++ TT F ASL A +
Sbjct: 547 RSTQDTSSIRTL--VLDEADIVATT-------LSFSGASLLTKMAGG-----------FD 586
Query: 586 FLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLTL 645
++IDEAAQ E+ + IP+Q G VL+GD QLPA + S ++ + +SLF+RL
Sbjct: 587 IVIIDEAAQAVETSTLIPIQ-HGCKKVVLVGDPKQLPATIISPLAIKYKYDQSLFQRLQE 645
Query: 646 LNHSKHLLDIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTEFGPYTFINI 705
N S H+L QYRMH I FP+ FY++ +LDG N+ S++ HY FGP F ++
Sbjct: 646 KN-SPHMLTTQYRMHSLIRAFPSRHFYQDLLLDGPNIPSRA--THYHSNPFFGPLVFYDL 702
Query: 706 -------IGGREEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVA 758
GG F H C+ + + + Q K + IG++SPY QV+A
Sbjct: 703 SWSTETKPGGGSVFNEHECK------MAMYLFQLFTKVYPDEDFASRIGIISPYRQQVLA 756
Query: 759 IRKKIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNT--GGSIGFISNPQRVNVA 816
+R+ ++N G + + +VDGFQG E +III S VR G IGF+S+ +R+NVA
Sbjct: 757 LREI----FKNYPG--ISIDTVDGFQGREREIIIFSCVRAPVEEGAGIGFLSDVRRMNVA 810
Query: 817 LTRARHCLWILGNERTLISSESIWGTLVCDAKARQCFFKADEDRNL 862
LTR R L ILGN + L S W L+ + Q +D+ L
Sbjct: 811 LTRPRSSLLILGNTKAL-SINKDWNELIQHTQNNQQLIPVTKDQPL 855
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 100/271 (36%), Positives = 159/271 (58%), Gaps = 6/271 (2%)
Query: 584 LNF--LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFE 641
LNF ++IDEAAQ E ++ IPL+ G +L+GD QLP V SK + ++ +SLF
Sbjct: 1370 LNFSTVIIDEAAQAVELDTIIPLRY-GAKKCILVGDPNQLPPTVLSKKAASLNYSQSLFV 1428
Query: 642 RLTL-LNHSKHLLDIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTEFGPY 700
R+ ++ LL IQYRMHP IS FP+ +FY +++ DG N+ K+ + ++ +F Y
Sbjct: 1429 RIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKTQQVWHV-NPKFTQY 1487
Query: 701 TFINIIGGREEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAIR 760
++ G S N+ EV ++ ++ +L + IGV++PY +Q+ +R
Sbjct: 1488 RLFDVRGKERTSNTMSTYNLEEVEYLVNMVDELLNKFPDVNFTGRIGVITPYRSQLHELR 1547
Query: 761 KKIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRA 820
+ +Y T+ +++VDGFQG E+DII S V+ + IGF+ + +R+NVALTRA
Sbjct: 1548 RAFKVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRA 1607
Query: 821 RHCLWILGNERTLISSESIWGTLVCDAKARQ 851
R L I+GN TL ++ +WG+LV DA +R+
Sbjct: 1608 RSSLLIIGNMETL-KTDDLWGSLVDDALSRK 1637
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 59/201 (29%)
Query: 250 LNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKT----VSMLLFSLLRI------- 298
+NEPQ A+ L +G L GPPGTGKTKT +S LL L R
Sbjct: 1130 VNEPQAKAIMCAL------DNNGFTLIQGPPGTGKTKTIIGIISALLVDLSRYHITRPNQ 1183
Query: 299 -------KCRTLACTPTNVAITELASRALR--LVKESYKRDSRNNTPFCPLGDILLFGNK 349
K + L C P+N A+ E+ R R L++ K R ++ GN
Sbjct: 1184 QSKSTESKQQILLCAPSNAAVDEVLLRLKRGFLLENGEKYIPR----------VVRIGNP 1233
Query: 350 DRLKVNPGFEEIYLDYRV-KRLMEC---------FAPLSGWRHCFSSMIDLLEDCVSQYH 399
+ +N ++ L+Y+ K+L+E L+ WR F DC+ +
Sbjct: 1234 E--TINVSVRDLSLEYQTEKQLLEVNQGAIDLGSLQELTRWRDTFY-------DCIQK-- 1282
Query: 400 IYVEKLKEREDCNENQSEEKK 420
+E+L+++ D + +E+ K
Sbjct: 1283 --IEELEKQIDVARDVAEDTK 1301
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 154 bits (389), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 151/278 (54%), Gaps = 11/278 (3%)
Query: 587 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQL-PAMVESKISDGASFGRSLFERLTL 645
++IDE+ Q E E IP+ + G +L+GD QL P ++E K +D A +SLFERL
Sbjct: 569 VLIDESTQASEPECLIPI-VKGAKQVILVGDHQQLGPVILERKAAD-AGLKQSLFERLIS 626
Query: 646 LNHSKHLLDIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTEFGPYTFINI 705
L H L++QYRM+P +S FP+ FY + +G ++ ++ P G
Sbjct: 627 LGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWA 686
Query: 706 IGGREEFIYH--SCRNMVEVSVVIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAIRK-- 761
GREE + S N +E +I+ KL++ V +Q IGV++PY Q I +
Sbjct: 687 NYGREEISANGTSFLNRIEAMNCERIITKLFRDGVKPEQ---IGVITPYEGQRAYILQYM 743
Query: 762 KIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRAR 821
++ + V+V SVD FQG E+D II+S VR N +IGF+ +P+R+NV LTRA+
Sbjct: 744 QMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAK 803
Query: 822 HCLWILGNERTLISSESIWGTLVCDAKARQCFFKADED 859
+ L ILGN R+L + ++W L+ + + C + D
Sbjct: 804 YGLVILGNPRSL-ARNTLWNHLLIHFREKGCLVEGTLD 840
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 14/113 (12%)
Query: 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI-KCRTLACT 306
+ LN Q AV L+R + L GPPGTGKT T + +++ L +I K R L C
Sbjct: 407 AQLNSSQSNAVSHVLQR-------PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCA 459
Query: 307 PTNVAITELASR----ALRLVKESYK--RDSRNNTPFCPLGDILLFGNKDRLK 353
P+NVA+ LA++ L++V+ + K D ++ L +++ G K LK
Sbjct: 460 PSNVAVDHLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRGAKGELK 512
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/275 (36%), Positives = 148/275 (53%), Gaps = 11/275 (4%)
Query: 587 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLTLL 646
++IDE+ Q E E IPL L G VL+GD QL ++ +K + A +SLFERL L
Sbjct: 618 VLIDESTQSAEPECMIPLVL-GCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKL 676
Query: 647 NHSKHLLDIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLP-GTEFGPYTFINI 705
+ L +QYRMHP +S FP+ FY + +G + + P P F +
Sbjct: 677 QFTPIRLKVQYRMHPCLSEFPSNMFYEGSLQNGVTAAERLRKDVDFPWPVPETPMMFWSN 736
Query: 706 IGGRE-EFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQMVSIGVVSPYTAQ---VVAIRK 761
+G E S N E + V KI+ + +KA V + IGV++PY Q +V +
Sbjct: 737 LGNEEISASGTSYLNRTEAANVEKIVTRFFKAGV---KPADIGVITPYEGQRSYIVNTMQ 793
Query: 762 KIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRAR 821
G+ ++ + V+V SVD FQG E+D I++S VR N IGF+S+P+R+NVALTRA+
Sbjct: 794 NTGT-FKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAK 852
Query: 822 HCLWILGNERTLISSESIWGTLVCDAKARQCFFKA 856
+ L I+GN + L E +W L+ K ++C +
Sbjct: 853 YGLVIIGNPKVLCKHE-LWHHLLVHFKDKKCLVEG 886
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 250 LNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI-KCRTLACTPT 308
LN Q+ A+ L + + L GPPGTGKT T + +++ L ++ + L C P+
Sbjct: 456 LNASQIAAIKQVL-------SNPLSLIQGPPGTGKTVTSATIIYHLAKMSNSQVLVCAPS 508
Query: 309 NVAITELASRALR 321
NVA+ +L R R
Sbjct: 509 NVAVDQLCERIHR 521
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 149/289 (51%), Gaps = 10/289 (3%)
Query: 587 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLTLL 646
++IDE+ Q E E IPL L G+ VL+GD CQL ++ K + A +SLFERL L
Sbjct: 653 VLIDESTQATEPECLIPLVL-GVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTL 711
Query: 647 NHSKHLLDIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTEFGPYTFINII 706
L +QYRMHP++S FP+ FY + +G + + P F +
Sbjct: 712 GIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTIIERQTTGIDFPWPVPNRPMFFYVQ 771
Query: 707 GGREEFIYHSCR--NMVEVSVVIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAIRKKIG 764
G+EE N E + V K++ K+ V Q IGV++PY Q I +
Sbjct: 772 LGQEEISASGTSYLNRTEAANVEKLVTAFLKSGVVPSQ---IGVITPYEGQRAYIVNYMA 828
Query: 765 SEYENKDGF--TVKVKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRARH 822
+ ++V SVD FQG E+D II+S VR N IGF+++P+R+NVALTRAR+
Sbjct: 829 RNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARY 888
Query: 823 CLWILGNERTLISSESIWGTLVCDAKARQCFFKADEDRNLAKARLEVSK 871
+ ILGN + L S + +W L+ K +C + + NL ++ ++ K
Sbjct: 889 GIVILGNPKVL-SKQPLWNGLLTHYKEHECLVEGPLN-NLKQSMVQFQK 935
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 12/89 (13%)
Query: 241 KFGPSLSSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI-K 299
+FG LN QV AV + L++ + L GPPGTGKT T + +++ + + +
Sbjct: 480 RFGVPGLPELNASQVNAVKSVLQKP-------ISLIQGPPGTGKTVTSAAIVYHMAKQGQ 532
Query: 300 CRTLACTPTNVAITELASR----ALRLVK 324
+ L C P+NVA+ +LA + L++V+
Sbjct: 533 GQVLVCAPSNVAVDQLAEKISATGLKVVR 561
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 152/289 (52%), Gaps = 10/289 (3%)
Query: 587 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLTLL 646
++IDE+ Q E E +P+ L G +L+GD CQL +V K + A +SLFERL +L
Sbjct: 639 ILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 697
Query: 647 NHSKHLLDIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTEFGPYTFINII 706
L +QYRMHP++S FP+ FY + +G + + + F +
Sbjct: 698 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVT 757
Query: 707 GGREEFIYH--SCRNMVEVSVVIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAIRK--K 762
G+EE S N E + V KI KL KA Q IG+++PY Q + + +
Sbjct: 758 QGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYLVQYMQ 814
Query: 763 IGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRARH 822
K V++ SVD FQG E+D II+S VR N IGF+++P+R+NVALTRAR+
Sbjct: 815 FSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARY 874
Query: 823 CLWILGNERTLISSESIWGTLVCDAKARQCFFKADEDRNLAKARLEVSK 871
+ I+GN + L S + +W L+ K ++ + + NL ++ ++ SK
Sbjct: 875 GVIIVGNPKAL-SKQPLWNHLLSYYKEQKALVEGPLN-NLRESLMQFSK 921
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 250 LNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI-KCRTLACTPT 308
LN QV AV L+R + L GPPGTGKT T + +++ L R L C P+
Sbjct: 477 LNHSQVYAVKTVLQR-------PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 529
Query: 309 NVAITELASR 318
N+A+ +L +
Sbjct: 530 NIAVDQLTEK 539
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 152/289 (52%), Gaps = 10/289 (3%)
Query: 587 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLTLL 646
++IDE+ Q E E +P+ L G +L+GD CQL +V K + A +SLFERL +L
Sbjct: 644 ILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 702
Query: 647 NHSKHLLDIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTEFGPYTFINII 706
L +QYRMHP++S FP+ FY + +G + + + F +
Sbjct: 703 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVT 762
Query: 707 GGREEFIYH--SCRNMVEVSVVIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAIRK--K 762
G+EE S N E + V KI KL KA Q IG+++PY Q + + +
Sbjct: 763 QGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYLVQYMQ 819
Query: 763 IGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRARH 822
K V++ SVD FQG E+D II+S VR N IGF+++P+R+NVALTRAR+
Sbjct: 820 FSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARY 879
Query: 823 CLWILGNERTLISSESIWGTLVCDAKARQCFFKADEDRNLAKARLEVSK 871
+ I+GN + L S + +W L+ K ++ + + NL ++ ++ SK
Sbjct: 880 GVIIVGNPKAL-SKQPLWNHLLNYYKEQKVLVEGPLN-NLRESLMQFSK 926
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 250 LNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI-KCRTLACTPT 308
LN QV AV L+R + L GPPGTGKT T + +++ L R L C P+
Sbjct: 482 LNHSQVYAVKTVLQR-------PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 534
Query: 309 NVAITELASR 318
N+A+ +L +
Sbjct: 535 NIAVDQLTEK 544
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/285 (36%), Positives = 147/285 (51%), Gaps = 21/285 (7%)
Query: 572 SSYKLHSVKIEPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISD 631
S YK SV +IDEA Q E E IPL L G VL+GD QL +V +K
Sbjct: 554 SKYKFRSV--------LIDEATQASEPECMIPLVL-GAKQVVLVGDHQQLGPVVMNKKVA 604
Query: 632 GASFGRSLFERLTLLNHSKHLLDIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHY 691
AS +SLFERL +L +S L +QYRMHP +S FP+ FY + +G +
Sbjct: 605 LASLSQSLFERLIILGNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIARHVD 664
Query: 692 LPGTEFGPYTFINIIGGREEFIYH--SCRNMVEVSVVIKILQKLYKAWVGSKQMVSIGVV 749
P + G+EE S N E S KI+ ++ V +Q IG+V
Sbjct: 665 FPWIQPDSPLMFYANFGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPEQ---IGIV 721
Query: 750 SPYTAQ---VVAIRKKIGSEYENKDGF-TVKVKSVDGFQGGEEDIIIISTVRCNTGGSIG 805
+PY Q +V + GS KD + V+V SVD FQG E+D II+S VR + IG
Sbjct: 722 TPYDGQRSYIVQYMQNNGSM--QKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQGIG 779
Query: 806 FISNPQRVNVALTRARHCLWILGNERTLISSESIWGTLVCDAKAR 850
F+++P+R+NVALTRA++ + +LGN + L + ++W V K +
Sbjct: 780 FVNDPRRLNVALTRAKYGVIVLGNPKVL-AKHALWYHFVLHCKEK 823
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 18/90 (20%)
Query: 250 LNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCR-------T 302
LN Q AV A L + + L GPPGTGKT T + +++ L ++ R
Sbjct: 393 LNASQSEAVRAVLSK-------PLSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPV 445
Query: 303 LACTPTNVAITELASR----ALRLVKESYK 328
L C P+NVA+ +LA + LR+V+ + K
Sbjct: 446 LVCAPSNVAVDQLAEKIHRTGLRVVRVAAK 475
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 100/283 (35%), Positives = 142/283 (50%), Gaps = 28/283 (9%)
Query: 587 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQL-PAMVESKISDGASFGRSLFERLTL 645
++IDE+ Q E E IPL + G +L+GD QL P ++ K+ D A +SLFERL
Sbjct: 703 ILIDESTQASEPECLIPL-MMGAKQVILVGDHRQLGPVLLCKKVVD-AGLSQSLFERLIS 760
Query: 646 LNHSKHLLDIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTEFGPYTFINI 705
L H L IQYRMHPS++ FP+ Y Q++ + + + + P F N
Sbjct: 761 LGHHPERLTIQYRMHPSLTEFPSNTSYEGQLVSELSHTDRDSQSKFPWPQPKDPMFFFNC 820
Query: 706 IGGRE------EFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAI 759
G E FI N E S+ KI+ K + Q IG+++PY Q
Sbjct: 821 TGSEEISSSGTSFI-----NTTEASICEKIVTKFLELGSLPGQ---IGIITPYEGQ---- 868
Query: 760 RKKIGSEYENKDGF------TVKVKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQRV 813
R I S + +++V SVD FQG E+D II+S VR N IGF+ +P+R+
Sbjct: 869 RAYITSHMQKSGKLNLELYKSIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRL 928
Query: 814 NVALTRARHCLWILGNERTLISSESIWGTLVCDAKARQCFFKA 856
NVALTRAR L ILGN + L S + +W +L+ K + +
Sbjct: 929 NVALTRARFGLIILGNAKVL-SKDPLWNSLISHFKNKNVLVEG 970
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 14/86 (16%)
Query: 250 LNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI---KCRTLACT 306
LNE Q+ AV L + + L GPPGTGKT S ++ L++ + L CT
Sbjct: 537 LNESQISAVNKVL-------TAPLSLIQGPPGTGKTVISSFIIHHLVKYVKGNDKVLVCT 589
Query: 307 PTNVAITELASR----ALRLVKESYK 328
P+NVAI +L + L++V+ S K
Sbjct: 590 PSNVAIDQLTGKLHEIGLKVVRLSSK 615
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 108/338 (31%), Positives = 174/338 (51%), Gaps = 24/338 (7%)
Query: 587 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLTLL 646
++IDE+ Q E E +P+ L G +L+GD CQL +V K + A +SLFERL +L
Sbjct: 614 ILIDESMQSTEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL 672
Query: 647 NHSKHLLDIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTEFGPYTFINII 706
L++QYRMHP +S FP+ FY + +G + + + + P + F +
Sbjct: 673 GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDF-PWPQPERPMFFLVT 731
Query: 707 GGREEFIYHSCR--NMVEVSVVIKILQKLYKAWVGSKQMVSIGVVSPYTAQ---VVAIRK 761
G+EE N E + V KI + KA + +Q IG+++PY Q +V +
Sbjct: 732 QGQEEIAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQ---IGIITPYEGQRAYLVQYMQ 788
Query: 762 KIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRAR 821
GS + ++ +++ SVD FQG E+DIII+S VR N IGF+++P+R+NVALTRA+
Sbjct: 789 YQGSLH-SRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTRAK 847
Query: 822 HCLWILGNERTLISSESIWGTLVCDAKARQCFFKADEDRNLAKARLEVSK-----ESVEI 876
+ I+GN + L + + +W L+ K R+ + + NL ++ + K S+ I
Sbjct: 848 FGIIIVGNPKVL-AKQQLWNHLLNFYKDRKVLVEGSLN-NLKESLIHFQKPKKLVNSMNI 905
Query: 877 DAESLTSRSQRGKLCYKPKYEKTTLCYDKDGETYWEGR 914
A +++ K P YD+ G Y +GR
Sbjct: 906 GAHFMSTIIADAKEVMVPGS-----IYDRSG-GYGQGR 937
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Query: 250 LNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRT-LACTPT 308
LN QV AV L+R + L GPPGTGKT T + +++ L+++ T L C P+
Sbjct: 452 LNRSQVYAVKHALQR-------PLSLIQGPPGTGKTVTSATIVYQLVKLHGGTVLVCAPS 504
Query: 309 NVAITELASRALR 321
N A+ +L + R
Sbjct: 505 NTAVDQLTEKIHR 517
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/308 (33%), Positives = 156/308 (50%), Gaps = 30/308 (9%)
Query: 563 ASLFFSTASSSYKLHSVKIEPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLP 622
A + T SS+ KI L IDE+ Q E E + + + G+ VL+GD CQL
Sbjct: 584 ADVICCTCSSAADARLSKIRTRTVL-IDESTQATEPEILVSI-MRGVRQLVLVGDHCQLG 641
Query: 623 AMVESKISDGASFGRSLFERLTLLNHSKHLLDIQYRMHPSISLFPNLQFYRNQILDGANV 682
+V K + A +SLFERL LL L +QYRMHP +S FP+ FY + +G
Sbjct: 642 PVVICKKAAIAGLSQSLFERLVLLGIRPFRLQVQYRMHPVLSEFPSNVFYDGSLQNGVTE 701
Query: 683 KSKSYEKHYLPGTEF------GPYTFINIIGGRE-EFIYHSCRNMVEVSVVIKILQKLYK 735
+ ++ G ++ P F + G E S N E + V K++ KL K
Sbjct: 702 NDR-----HMTGVDWHWPKPNKPAFFWHCSGSEELSASGTSFLNRTEAANVEKLVSKLIK 756
Query: 736 AWVGSKQMVSIGVVSPYTAQVVAIRKKIGSE-------YENKDGFTVKVKSVDGFQGGEE 788
A V Q IGV++ Y Q I + ++ YEN V++ SVD FQG E+
Sbjct: 757 AGVQPHQ---IGVITSYEGQRSFIVNYMHTQGTLNSKLYEN-----VEIASVDAFQGREK 808
Query: 789 DIIIISTVRCNTGGSIGFISNPQRVNVALTRARHCLWILGNERTLISSESIWGTLVCDAK 848
D II++ VR N IGF+S+P+R+NVA+TRA++ L ++GN + L + +W L+ K
Sbjct: 809 DYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGLVLVGNAKVL-ARHDLWHELINHYK 867
Query: 849 ARQCFFKA 856
+++ ++
Sbjct: 868 SKEMLYEG 875
Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 250 LNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLL-RIKCRTLACTPT 308
LN Q+ AV L R + L GPPGTGKT + +++ L+ + + L C+P+
Sbjct: 446 LNSSQMQAVKQVLTR-------PLSLIQGPPGTGKTVVSATIVYHLVQKTEGNVLVCSPS 498
Query: 309 NVAITELASR 318
N+A+ LA +
Sbjct: 499 NIAVDHLAEK 508
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/286 (32%), Positives = 150/286 (52%), Gaps = 21/286 (7%)
Query: 583 PLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFER 642
P + +++DEA Q E E+ PL + N +L+GD QLP V S + + +S+ R
Sbjct: 2174 PFSCVIVDEAGQSCEIETLTPL-IHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMAR 2232
Query: 643 LTLL--NHSKH---------LLDIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHY 691
L + +H L +QYRMHP I LFP+ Y + ++ +
Sbjct: 2233 FCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVYNRNLKTNRQTEAIRCSSDW 2292
Query: 692 LPGTEFGPYTFINIIGGREEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQMVSIGVVSP 751
F PY ++ G E S N+ E+ +V++I+ KL K +IG+++
Sbjct: 2293 ----PFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEII-KLIKDKRKDVSFRNIGIITH 2347
Query: 752 YTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNT-GGSIGFISNP 810
Y AQ I+K + E++ K +V +VD FQG ++D +I++ VR N+ GSIGF+++
Sbjct: 2348 YKAQKTMIQKDLDKEFDRKG--PAEVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLASL 2405
Query: 811 QRVNVALTRARHCLWILGNERTLISSESIWGTLVCDAKARQCFFKA 856
QR+NV +TRA++ L+ILG+ RTL+ ++ W L+ DA+ R K
Sbjct: 2406 QRLNVTITRAKYSLFILGHLRTLMENQH-WNQLIQDAQKRGAIIKT 2450
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 83/202 (41%), Gaps = 38/202 (18%)
Query: 258 VFACLRRLDCDHKSGVELRW----------------GPPGTGKTKTVSMLLFSLL----- 296
+ A LR + D K +E + GPPGTGK+KT+ LL+ LL
Sbjct: 1927 IIAYLRDFNEDQKKAIETAYAMVKHSPSVAKICLIHGPPGTGKSKTIVGLLYRLLTENQR 1986
Query: 297 ----------RIK-CRTLACTPTNVAITELASRALRLVKESYKRDSRNNTPFCPLGDILL 345
+IK R L C P+N A+ EL + + KE K D +N P GDI L
Sbjct: 1987 KGHSDENSNAKIKQNRVLVCAPSNAAVDELMKKIILEFKEKCK-DKKN--PLGNCGDINL 2043
Query: 346 FGNKDRLKVNPGFEEIYLDYRVKRLMECFAPLS-GWRHCFSSMIDLLEDCVSQYHIYVEK 404
+N + LD +V M+ P H +D D +S+
Sbjct: 2044 VRLGPEKSINSEVLKFSLDSQVNHRMKKELPSHVQAMHKRKEFLDYQLDELSRQRALCRG 2103
Query: 405 LKE--REDCNENQSEEKKCRKE 424
+E R++ +EN S+ K R+E
Sbjct: 2104 GREIQRQELDENISKVSKERQE 2125
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 154/290 (53%), Gaps = 25/290 (8%)
Query: 583 PLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFER 642
P + +++DEA Q E E+ PL + N +L+GD QLP V S + + +S+ R
Sbjct: 2150 PFSCVIVDEAGQSCEVETLSPL-IHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMAR 2208
Query: 643 LTLL---NHSKHL--------LDIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHY 691
L N +++ L IQYRMHP I LFP+ Y N+K+ +
Sbjct: 2209 FCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVY------NKNLKTNRLTESI 2262
Query: 692 LPGTE--FGPYTFINIIGGREEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQMVSIGVV 749
+E F PY ++ G E S N+ E+ +V++I+ KL K +IG++
Sbjct: 2263 RCSSEWPFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEII-KLIKEKRKDISFRNIGII 2321
Query: 750 SPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNT-GGSIGFIS 808
+ Y AQ I+K + E++ K +V +VD FQG ++D II++ VR + GSIGF++
Sbjct: 2322 THYKAQKTMIQKDLEKEFDKKG--PAEVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLA 2379
Query: 809 NPQRVNVALTRARHCLWILGNERTLISSESIWGTLVCDAKARQCFFKADE 858
+ QR+NV +TRA++ L+ILG+ RTL+ ++ W L+ DA+ R K +
Sbjct: 2380 SLQRLNVTITRAKYSLFILGHLRTLMENQH-WYELIQDAQKRGAIIKTSD 2428
Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 51/111 (45%), Gaps = 19/111 (17%)
Query: 278 GPPGTGKTKTVSMLLFSLL---------------RIK-CRTLACTPTNVAITELASRALR 321
GPPGTGK+KT+ LL+ LL +IK R L C P+N A+ EL + +
Sbjct: 1939 GPPGTGKSKTIVGLLYRLLTENQRKGHSDENFNAKIKQNRVLVCAPSNAAVDELMKKIIL 1998
Query: 322 LVKESYKRDSRNNTPFCPLGDILLFGNKDRLKVNPGFEEIYLDYRVKRLME 372
KE K D +N P GDI L +N + LD +V M+
Sbjct: 1999 EFKEKCK-DKKN--PLGNCGDINLVRLGPEKSINTEVLKFSLDSQVNHRMK 2046
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 134 bits (337), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 145/269 (53%), Gaps = 18/269 (6%)
Query: 587 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGA---SFGRSLFERL 643
+V+DE +Q+ E S +P+ +L+GD QLP ++ SD A ++LF+RL
Sbjct: 628 VVLDECSQITEPASLLPIARFECEKLILVGDPKQLPPTIQG--SDAAHENGLEQTLFDRL 685
Query: 644 TLLNHSKHLLDIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTEFGPYTFI 703
L+ H LL QYR HP+IS N FY+ +++G +S +LP F
Sbjct: 686 CLMGHKPILLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPLLEWLPT-----LCFY 740
Query: 704 NIIGGREEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAIRKKI 763
N+ G + +S N+ E + +K++Q L + + IGV++ Y +Q+ + +
Sbjct: 741 NVKGLEQIERDNSFHNVAEATFTLKLIQSLIASGIAGSM---IGVITLYKSQMYKLCHLL 797
Query: 764 GS-EYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRARH 822
+ ++ + D TV+V +VD FQG E++III+S VR +GFI + +R+NVALTR +
Sbjct: 798 SAVDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRTR---QVGFIDSEKRMNVALTRGKR 854
Query: 823 CLWILGNERTLISSESIWGTLVCDAKARQ 851
L I+GN L ++ +WG ++ + R+
Sbjct: 855 HLLIVGNLACLRKNQ-LWGRVIQHCEGRE 882
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 164/340 (48%), Gaps = 63/340 (18%)
Query: 562 RASLFFST--ASSSYKLHSVKIEPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDEC 619
++ + F+T A+ +L +K P+ +++DEA Q E+ + +PL L GI + V +GDE
Sbjct: 792 QSQIIFTTNIAAGGRELKVIKECPV--VIMDEATQSSEASTLVPLSLPGIRNFVFVGDEK 849
Query: 620 QLPAMVESKISDGASFGRSLFERLTLLNHSKH--LLDIQYRMHPSISLFPNLQFYRNQIL 677
QL S S+ SLFER+ K+ +LD QYRMHP IS FP + Y ++
Sbjct: 850 QL-----SSFSNIPQLETSLFERVLSNGTYKNPLMLDTQYRMHPKISEFPIKKIYNGELK 904
Query: 678 DGANVKSKSYEKHYLP----GTEFGPYTFI-----NIIGGREEFIYHSCRNMVEVSVVIK 728
DG + K++ P + GP + + +I+G F Y + VE+ +I+
Sbjct: 905 DGVTDEQKAWPGVQHPLFFYQCDLGPESRVRSTQRDIVG----FTYENKHECVEIVKIIQ 960
Query: 729 ILQKLYKAWVGSKQMVSIGVVSPYTAQ-----------VVAIRKKIG--SEYENKDGFT- 774
IL K + IGV++PY+AQ VV K+I EY+ + F
Sbjct: 961 ILMLDKKV-----PLEEIGVITPYSAQRDLLSDILTKNVVINPKQISMQQEYDEIELFNA 1015
Query: 775 --------------------VKVKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQRVN 814
+ V +VD FQG E+ II S VR NT IGF+ + +R+N
Sbjct: 1016 AGSQGTAGSLQNNVINIINGLHVATVDSFQGHEKSFIIFSCVRNNTENKIGFLRDKRRLN 1075
Query: 815 VALTRARHCLWILGNERTLISSESIWGTLVCDAKARQCFF 854
VALTRA+H L ++GN+ L + +W + + ++ F
Sbjct: 1076 VALTRAKHGLIVVGNKNVLRKGDPLWKDYITYLEEQEVIF 1115
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 152/290 (52%), Gaps = 14/290 (4%)
Query: 587 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLTLL 646
++IDE+ Q E + P++L +++G+ + V K + A +SLFERL +L
Sbjct: 615 ILIDESTQATEPKCIGPVELGA--KQLILGEITASWSCVMCKKAAKAGLSQSLFERLVVL 672
Query: 647 NHSKHLLDIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTEFGPYTFINII 706
L +QYRMHP++S FP+ FY + +G + + + F +
Sbjct: 673 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRIKKGFDFQWPQPEKPMFFYVT 732
Query: 707 GGREEFIYH--SCRNMVEVSVVIKILQKLYKAWVGSKQMVSIGVVSPYTAQ---VVAIRK 761
G+EE S N E + V KI +L KA Q IG+++PY Q +V +
Sbjct: 733 QGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQ---IGIITPYEGQRSYLVQYMQ 789
Query: 762 KIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRAR 821
GS + + V++ SVD FQG E+D II+S VR N IGF+++P+R+NVALTRA+
Sbjct: 790 FSGSLHTKL--YQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAK 847
Query: 822 HCLWILGNERTLISSESIWGTLVCDAKARQCFFKADEDRNLAKARLEVSK 871
+ + I+GN + L S + +W L+ + K ++ + + NL ++ ++ SK
Sbjct: 848 YGVIIVGNPKAL-SKQPLWNNLLNNYKEQKVLVEGPLN-NLRESLMQFSK 895
Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 250 LNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI-KCRTLACTPT 308
LN QV AV L+R + L GPPGTGKT T + +++ L R L C P+
Sbjct: 453 LNHSQVYAVKTVLQR-------PLSLIQGPPGTGKTVTSATIVYHLSRQGNGPVLVCAPS 505
Query: 309 NVAITELASR 318
N+A+ +L +
Sbjct: 506 NIAVDQLTEK 515
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 150/300 (50%), Gaps = 35/300 (11%)
Query: 563 ASLFFSTASSSYKLHSVKIEPLNF---LVIDEAAQLKESESTIPLQLAGINHAVLIGDEC 619
A + +T + + +K+ P ++ +V+DE AQ E+ IPL A +L GD
Sbjct: 344 ADVVLATNTGASTDGPLKLLPEDYFDVVVVDECAQALEASCWIPLLKA--PKCILAGDHK 401
Query: 620 QLPAMVESKISDGASFGRSLFERLTLLNHSKH------LLDIQYRMHPSISLFPNLQFYR 673
QLP S + A RSL ERL KH +L +QYRMH +I+ + + Y
Sbjct: 402 QLPPTTVSHKAALAGLSRSLMERLA----EKHGAAVVRMLAVQYRMHQAITRWASEAMYH 457
Query: 674 NQILDGANVKSKSYEKHYLPG---TEFG--PYTFINIIG----GREEFIYHSCRNMVEVS 724
Q+ +V + LPG TE P I+ G EE S N EV
Sbjct: 458 GQLTAHPSVAGHLLKD--LPGVADTEETSVPLLLIDTAGCGLLELEEEDSQSKGNPGEVR 515
Query: 725 VVIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQ 784
+V +Q L A V Q I V++PY QV +R+ + +++ +++KSVDGFQ
Sbjct: 516 LVTLHIQALVDAGV---QAGDIAVIAPYNLQVDLLRQSLSNKHPE-----LEIKSVDGFQ 567
Query: 785 GGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRARHCLWILGNERTLISSESIWGTLV 844
G E++ +I++ VR N G +GF++ +R+NVA+TRAR + ++ + T +++ + TLV
Sbjct: 568 GREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHT-VNNHAFLKTLV 626
Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 273 VELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASR 318
V + GPPGTGKT TV ++ ++ + L C P+N+A+ L R
Sbjct: 208 VAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVER 253
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 137/269 (50%), Gaps = 29/269 (10%)
Query: 579 VKIEPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRS 638
+K + + ++IDEA+Q E + IPL G+N +L GD QL V+SK S
Sbjct: 378 LKGQRFDAVIIDEASQALEPQCWIPL--LGMNKVILAGDHMQLSPNVQSKRP-----YIS 430
Query: 639 LFERLTLLNHS--KHLLDIQYRMHPSISLFPNLQFYRNQILDGANVKSKS-YEKHYLPGT 695
+FERL K L+IQYRMH IS FP+ FY ++++ VK + + + T
Sbjct: 431 MFERLVKSQGDLVKCFLNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLMDLENVEET 490
Query: 696 EF--GPYTFINIIGGREE---------FIYHSCRNMVEVSVVIKILQKLYKAWVGSKQMV 744
E P F + +G +E F S N E +V + L +A + +K
Sbjct: 491 ELTDSPIYFYDTLGNYQEDDRSEDMQNFYQDSKSNHWEAQIVSYHISGLLEAGLEAK--- 547
Query: 745 SIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGSI 804
I VV+PY AQV IR+ + + G V++ SVD QG E++ II S VR N +
Sbjct: 548 DIAVVTPYNAQVALIRQLL-----KEKGIEVEMGSVDKVQGREKEAIIFSLVRSNDVREV 602
Query: 805 GFISNPQRVNVALTRARHCLWILGNERTL 833
GF++ +R+NVA+TR + L ++G+ T+
Sbjct: 603 GFLAEKRRLNVAITRPKRHLCVIGDSNTV 631
Score = 38.5 bits (88), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 278 GPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASR 318
GPPGTGKT T+ ++ L+ R L C +N+A+ + R
Sbjct: 232 GPPGTGKTHTLVEIIQQLVLRNKRILVCGASNLAVDNIVDR 272
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 154/328 (46%), Gaps = 37/328 (11%)
Query: 556 KDFCFKRASLFFSTASSSYKLHSVKIEPLNFLVIDEAAQLKESESTIPL-QLAGINHAVL 614
+ F R + T S + S+KI + +++DEA E E+ IPL Q VL
Sbjct: 2327 RKFELDRHEVILCTCSCAASA-SLKILDVRQILVDEAGMATEPETLIPLVQFPQAEKVVL 2385
Query: 615 IGDECQLPAMVESKISDGASFGRSLFERLTLLNHSKHLLDIQYRMHPSISLFPNLQFYRN 674
+GD QL +V+++ RSLFER + H+LD QYRMH I FP++ FY++
Sbjct: 2386 LGDHKQLRPVVKNERLQNLGLDRSLFERY---HEDAHMLDTQYRMHEGICAFPSVAFYKS 2442
Query: 675 QILDGANV-KSKSYEKHYLPGTEFGPYTFINIIGGREEFIY-------HSCRNMVEVSVV 726
++ + + S H G E P F ++ G + +S N+ EV+ V
Sbjct: 2443 KLKTWQGLRRPPSVLGHA--GKESCPVIFGHVQGHERSLLVSTDEGNENSKANLEEVAEV 2500
Query: 727 IKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFT-VKVKSVDGFQG 785
++I ++L Q I V++PY AQ I K + ++G V V S+ QG
Sbjct: 2501 VRITKQLTLGRTVEPQ--DIAVLTPYNAQASEISKAL-----RREGIAGVAVSSITKSQG 2553
Query: 786 GEEDIIIISTVRCNTGGS-------------IGFISNPQRVNVALTRARHCLWILGNERT 832
E +++STVR +GF+ +P +VNVA+TRA+ L ++G+
Sbjct: 2554 SEWRYVLVSTVRTCAKSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIGDH-L 2612
Query: 833 LISSESIWGTLVCDAKARQCFFKADEDR 860
L+ +W +L+ +A+Q A + R
Sbjct: 2613 LLRCCPLWRSLLDFCEAQQTLVPAGQVR 2640
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 135/299 (45%), Gaps = 39/299 (13%)
Query: 560 FKRASLFFSTASSSYKLHSVKIEPLNFLVIDEAAQLKESESTIPLQLAGIN-HAVLIGDE 618
R + +T S + +L V + + ++IDEAAQ+ E E+ PL A VL GD
Sbjct: 638 LARHRVVVTTTSQARELR-VPVGFFSHILIDEAAQMLECEALTPLAYASHGTRLVLAGDH 696
Query: 619 CQLPAMVESKISDGASFGRSLFERLTL---------LNHSKHLLDIQYRMHPSISLFPNL 669
Q+ + S ++ + +L RL L S+ + YR +I F +
Sbjct: 697 MQVTPRLFS-VARARAAEHTLLHRLFLCYQQETHEVARQSRLVFHENYRCTDAIVSFISR 755
Query: 670 QFY---RNQILDGANVKSKSYEKHYLPGTEFGPYTFINIIGGRE-EFIYHSCRNMVEVSV 725
FY N I A K + +HY P F ++ G + + S N+ E++
Sbjct: 756 HFYVAKGNPI--HARGKVPPHPRHY-------PLMFCHVAGSPDRDMSMASWLNLAEIAQ 806
Query: 726 VIKILQKLYKAWV---GSKQMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDG 782
V++ +Q+ Y W G ++ I VVS + AQV A+R+ E +D V V S +
Sbjct: 807 VVEKVQEAYNTWPSCWGGREQRCICVVS-HGAQVSALRQ----ELRRRDLGQVSVGSFEI 861
Query: 783 FQGGEEDIIIISTVR-CNTGGSIG-----FISNPQRVNVALTRARHCLWILGNERTLIS 835
G + ++++STV C + S G F ++ + +N LTRA+ L ++G+ L S
Sbjct: 862 LPGRQFRVVVLSTVHTCQSLLSPGALAPEFFTDARVLNTVLTRAQSQLVVVGDAVALCS 920
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/325 (32%), Positives = 157/325 (48%), Gaps = 36/325 (11%)
Query: 541 LDELNLPCTTSKQLLKDFCFKRASLFFSTASSSYKLHSVKIEPLNF--LVIDEAAQLKES 598
DEL C K L R L ST S+ L++ + +F +++DEA Q E
Sbjct: 500 FDELIFKCPPLKALT------RYKLVVSTYMSASLLNAEGVNRGHFTHILLDEAGQASEP 553
Query: 599 ESTIPLQLAGINHAVLI--GDECQLPAMVESKISDGASFGRSLFERL--------TLLNH 648
E+ I + + V++ GD QL ++ S+ ++ G+S ERL N+
Sbjct: 554 ENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCEGDENY 613
Query: 649 SKHLLDIQYRMHPSISLFPNLQFYRNQILDGA-NVKSKSYEKHYLPGTEFGPYTFINIIG 707
L+ YR HP I P+ FY +++ + S ++LP EF P F I G
Sbjct: 614 VTKLVK-NYRCHPEILDLPSKLFYDGELVASKEDTDSVLASLNFLPNKEF-PMVFYGIQG 671
Query: 708 GRE-EFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAIRKKIGSE 766
E E S N +E+S VI+ +++L Q IGV++PY QV+ I++ +
Sbjct: 672 CDEREGNNPSWFNRIEISKVIETIKRLTAN--DCVQEEDIGVITPYRQQVMKIKEVL--- 726
Query: 767 YENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGS-------IGFISNPQRVNVALTR 819
+ D VKV SV+ FQG E+ +IIISTVR + +GF+SNP+R NVA+TR
Sbjct: 727 -DRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITR 785
Query: 820 ARHCLWILGNERTLISSESIWGTLV 844
A L I+GN +I + W L+
Sbjct: 786 AISLLVIIGNPH-IICKDMNWNKLL 809
Score = 35.4 bits (80), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 278 GPPGTGKTKTVSMLLFSLLRIK--CRTLACTPTNVAITELASRALRL 322
GPPGTGKT T+ + L + R L C P+N A + + L L
Sbjct: 421 GPPGTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKLLCL 467
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 150/300 (50%), Gaps = 35/300 (11%)
Query: 563 ASLFFSTASSSYKLHSVKIEPLN---FLVIDEAAQLKESESTIPLQLAGINHAVLIGDEC 619
A + +T + + +K+ P N +V+DE AQ E+ IPL A +L GD
Sbjct: 344 ADVVLATNTGASSDGPLKLLPENHFDVVVVDECAQALEASCWIPLLKA--PKCILAGDHR 401
Query: 620 QLPAMVESKISDGASFGRSLFERLTLLNHSKH------LLDIQYRMHPSISLFPNLQFYR 673
QLP S + A RSL ERL KH +L +QYRMH +I+ + + Y
Sbjct: 402 QLPPTTISHKAALAGLSRSLMERLV----EKHGAGAVRMLTVQYRMHQAITRWASEAMYH 457
Query: 674 NQILDGANVKSKSYEKHYLPG---TEFG--PYTFINIIG----GREEFIYHSCRNMVEVS 724
Q+ +V + LPG TE P I+ G +E S N EV
Sbjct: 458 GQLTAHPSVAGHLLKD--LPGVADTEETSVPLLLIDTAGCGLLELDEEDSQSKGNPGEVR 515
Query: 725 VVIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQ 784
+V +Q L A V + I V++PY QV +R+ + +++ +++KSVDGFQ
Sbjct: 516 LVTLHIQALVDAGVHAG---DIAVIAPYNLQVDLLRQSLSNKHPE-----LEIKSVDGFQ 567
Query: 785 GGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRARHCLWILGNERTLISSESIWGTLV 844
G E++ +I++ VR N G +GF++ +R+NVA+TRAR + ++ + RT +++ + TLV
Sbjct: 568 GREKEAVILTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRT-VNNHAFLKTLV 626
Score = 44.3 bits (103), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 273 VELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASR 318
V + GPPGTGKT TV ++ ++ + L C P+NVA+ L R
Sbjct: 208 VAIIHGPPGTGKTTTVVEIILQAVKQGLKILCCAPSNVAVDNLVER 253
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 146/289 (50%), Gaps = 38/289 (13%)
Query: 570 ASSSYKLHSVKIEPLNF-----LVIDEAAQLKESESTIPLQLAGINH---AVLIGDECQL 621
SSS +L S+ + NF L+IDE +Q E + IPL +A N VL GD QL
Sbjct: 370 GSSSRELCSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIPL-IAHQNQFHKLVLAGDNKQL 428
Query: 622 PAMVESKISDGA--SFGRSLFERLTLLNHSKHL---LDIQYRMHPSISLFPNLQFYRNQI 676
P ++++ + +LF+R+ + + + L++QYRM+ I FP+ Y ++
Sbjct: 429 PPTIKTEDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKL 488
Query: 677 LDGANVKSKSYEKHYLPGTEFGPY-----TFINII-----------GGREEFIYHSCRNM 720
L A V ++ LP + P T I +I E I S N
Sbjct: 489 LADATVANRLLID--LPTVDATPSEDDDDTKIPLIWYDTQGDEFQETADEATILGSKYNE 546
Query: 721 VEVSVVIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSV 780
E+++V + ++ L V SIGV+SPY AQV ++K I E + D +++ +V
Sbjct: 547 GEIAIVKEHIENLRSFNVPEN---SIGVISPYNAQVSHLKKLIHDELKLTD---IEISTV 600
Query: 781 DGFQGGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRARHCLWILGN 829
DGFQG E+D+II+S VR N +GF+ +R+NVA+TR R L ++GN
Sbjct: 601 DGFQGREKDVIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGN 649
Score = 41.2 bits (95), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 26/110 (23%)
Query: 246 LSSTLNEPQVGAV-FACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLL--RIKCRT 302
L+ LN+ Q A+ FA L H GPPGTGKT T+ L+ LL + R
Sbjct: 204 LNPNLNDSQKTAINFAINNDLTIIH--------GPPGTGKTFTLIELIQQLLIKNPEERI 255
Query: 303 LACTPTNVAITELASRALRLVKESYKRDSRNNTPFCPLGDILLFGNKDRL 352
L C P+N+++ + R TP P +L G+ RL
Sbjct: 256 LICGPSNISVDTILERL---------------TPLVPNNLLLRIGHPARL 290
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/277 (32%), Positives = 145/277 (52%), Gaps = 31/277 (11%)
Query: 584 LNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERL 643
+ +VIDE +Q E IP+ + G ++ GD QLP V +S+ ++LFERL
Sbjct: 395 FDVIVIDEGSQAMEPSCLIPI-VKG-RKLIMAGDHKQLPPTV---LSENEELKKTLFERL 449
Query: 644 TL-LNHSKHLLDIQYRMHPSISLFPNLQFYRNQILDGANVKS-------KSYEKHYLPGT 695
+L+IQYRM+ I FPN FY N++ +VK+ K E +
Sbjct: 450 IKKYPEFSSILEIQYRMNEKIMEFPNKMFYNNKLKADESVKNITLLDLVKEEEIDEVDRD 509
Query: 696 EFG--PYTFINIIG-GREEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQMVSIGVVSPY 752
P FIN+ G R++ S N+ E V++I++KL K + + V++PY
Sbjct: 510 IINEIPVQFINVEGIERKDKESPSYYNIEEAEKVLEIVKKLVKYKIPT------NVITPY 563
Query: 753 TAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQR 812
AQV +R+ E N D ++V +VDGFQG E + I+IS VR + GF+ + +R
Sbjct: 564 DAQVRYLRRLF--EEHNID---IEVNTVDGFQGRENEAIVISFVRTK---NFGFLKDLRR 615
Query: 813 VNVALTRARHCLWILGNERTLISSESIWGTLVCDAKA 849
+NVA+TRA+ L ++GNE L+ + ++ ++ AK+
Sbjct: 616 LNVAITRAKRKLILIGNE-NLLKQDKVYNEMIKWAKS 651
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 148/300 (49%), Gaps = 35/300 (11%)
Query: 563 ASLFFSTASSSYKLHSVKIEPLNF---LVIDEAAQLKESESTIPLQLAGINHAVLIGDEC 619
A + +T + + +K+ P ++ +V+DE AQ E+ IPL A +L GD
Sbjct: 344 ADVVLATNTGASSDGPLKLLPEDYFDVVVVDECAQALEASCWIPLLKA--PKCILAGDHR 401
Query: 620 QLPAMVESKISDGASFGRSLFERLTLLNHSKH------LLDIQYRMHPSISLFPNLQFYR 673
QLP S + A RSL ERL KH +L +QYRMH +I + + Y
Sbjct: 402 QLPPTTVSHRAALAGLSRSLMERLA----EKHGAGVVRMLTVQYRMHQAIMCWASEAMYH 457
Query: 674 NQILDGANVKSKSYEKHYLPG---TEFG--PYTFINIIG----GREEFIYHSCRNMVEVS 724
Q +V + LPG TE P I+ G EE S N EV
Sbjct: 458 GQFTSHPSVAGHLLKD--LPGVTDTEETRVPLLLIDTAGCGLLELEEEDSQSKGNPGEVR 515
Query: 725 VVIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQ 784
+V +Q L A V Q I V++PY QV +R+ + +++ +++KSVDGFQ
Sbjct: 516 LVTLHIQALVDAGV---QAGDIAVIAPYNLQVDLLRQSLSNKHPE-----LEIKSVDGFQ 567
Query: 785 GGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRARHCLWILGNERTLISSESIWGTLV 844
G E++ ++++ VR N G +GF++ +R+NVA+TRAR + ++ + T +++ + TLV
Sbjct: 568 GREKEAVLLTFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSHT-VNNHAFLETLV 626
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 278 GPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASR 318
GPPGTGKT TV ++ ++ + L C P+N+A+ L R
Sbjct: 213 GPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVER 253
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 140/289 (48%), Gaps = 38/289 (13%)
Query: 587 LVIDEAAQLKESESTIPLQLAGINHA-----VLIGDECQLPAMVESKISDGASFGRSLFE 641
+ +DEA E E I + +AG+ +A VL GD QL ++ S + G SL E
Sbjct: 669 IFVDEAGHAVEPE--IVISVAGLLNAETGQLVLAGDPKQLGPILRSPFAIKYGLGLSLLE 726
Query: 642 RLTLLNHSKHLLDI------------QYRMHPSISLFPNLQFYRNQILDGAN-VKSKSY- 687
RL N D YR HPSI PN FY N++ A+ + S+ Y
Sbjct: 727 RLMTQNELYQKGDTGFDNRYVTKLLQNYRSHPSILKVPNELFYDNELKACADEISSRQYC 786
Query: 688 EKHYLPGTEFGPYTFINIIGGRE-EFIYHSCRNMVEVSVVIKILQKLY----KAWVGSKQ 742
+LP F P F ++G E E S N E+ ++ L+KL K +
Sbjct: 787 TWEHLPKRGF-PVIFHGVVGKDERESTSPSFFNTSEIDKIMDYLKKLLLTQAKKGIAKIS 845
Query: 743 MVSIGVVSPYTAQVVAIRK--KIGSEYENKDGFT-VKVKSVDGFQGGEEDIIIISTVRCN 799
IG+++PY QV IR+ KI E ++ G +KV SV+ FQG E +II+STVR +
Sbjct: 846 PKDIGIIAPYRKQVEKIRQAIKIHRELKSLSGIEELKVGSVEEFQGQERKVIIVSTVRSS 905
Query: 800 TGG-------SIGFISNPQRVNVALTRARHCLWILGNERTLISSESIWG 841
+IGF+ N +R NVA+TRA+ L ++GN ++ ++ IWG
Sbjct: 906 KEHIILDDKFNIGFLKNEKRFNVAVTRAKALLIMVGNP-IILRTDEIWG 953
Score = 37.4 bits (85), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIK--CRTLACTPTNVAITELASRALRLVKESY 327
K L +GPPGTGKT T+ + + + R LAC P+N A +L + + S
Sbjct: 542 KPAPYLVFGPPGTGKTVTIVEAIKQVEKNTGGARILACAPSNSAADQLGEKLI----TSQ 597
Query: 328 KRDSRN 333
D+RN
Sbjct: 598 HVDARN 603
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 149/299 (49%), Gaps = 33/299 (11%)
Query: 563 ASLFFSTASSSYKLHSVKIEP---LNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDEC 619
A++ +T + + +K+ P + +VIDE AQ E+ IPL A +L GD
Sbjct: 345 ANVVLATNTGASADGPLKLLPESYFDVVVIDECAQALEASCWIPLLKA--RKCILAGDHK 402
Query: 620 QLPAMVESKISDGASFGRSLFERLTLLNHSK--HLLDIQYRMHPSISLFPNLQFYRNQIL 677
QLP S + A SL ERL ++ L +QYRMH +I + + Y Q+
Sbjct: 403 QLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLT 462
Query: 678 DGANVKSKSYEKHYL---PGT----EFG-PYTFINIIG----GREEFIYHSCRNMVEVSV 725
++V +H L PG E G P ++ G EE S N EV +
Sbjct: 463 AHSSVA-----RHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRL 517
Query: 726 VIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQG 785
V +Q L A V ++ I VVSPY QV +R+ + + +++KSVDGFQG
Sbjct: 518 VSLHIQALVDAGVPAR---DIAVVSPYNLQVDLLRQSLVHRHPE-----LEIKSVDGFQG 569
Query: 786 GEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRARHCLWILGNERTLISSESIWGTLV 844
E++ +I+S VR N G +GF++ +R+NVA+TRAR + ++ + RT +++ + TLV
Sbjct: 570 REKEAVILSFVRSNRKGEVGFLAEDRRINVAVTRARRHVAVICDSRT-VNNHAFLKTLV 627
Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 278 GPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASR 318
GPPGTGKT TV ++ ++ + L C P+N+A+ L R
Sbjct: 214 GPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVER 254
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 141/290 (48%), Gaps = 38/290 (13%)
Query: 589 IDEAAQLKESESTIPLQLAGINHA-----VLIGDECQLPAMVESKISDGASFGRSLFERL 643
+DEA ESE+ I +AG+ +A VL GD QL ++ S ++ SL ERL
Sbjct: 676 VDEAGHAVESETII--SVAGLLNAEKGQLVLAGDPKQLGPILRSPLAINHGLDVSLLERL 733
Query: 644 TLLNHSKHLLDIQ------------YRMHPSISLFPNLQFYRNQILDGAN-VKSKSYEK- 689
N D++ YR HP I PN FY ++ A+ + S Y
Sbjct: 734 MTQNDLYKRGDVEFDNRYVSKLIMNYRSHPYILEVPNRLFYDGELKACADEISSNQYCMW 793
Query: 690 HYLPGTEFGPYTFINIIGGRE-EFIYHSCRNMVEVSVVIKILQKLY----KAWVGSKQMV 744
+LP F P F + G E E S N+ E+++++ L+KL K +
Sbjct: 794 EHLPSKGF-PVIFHGVPGKDERESNSPSFFNIYEINILVDYLKKLLLTQPKKGISRIFPK 852
Query: 745 SIGVVSPYTAQVVAIRKKIGSEYENKDGFTV---KVKSVDGFQGGEEDIIIISTVRCNTG 801
IG+++PY QV I++ I ++ + +D + KV SV+ FQG E +I++STVR +
Sbjct: 853 DIGIIAPYRKQVEKIKRAIDADKDFQDYMGIDNLKVGSVEEFQGQERKVIMVSTVRSSVK 912
Query: 802 G-------SIGFISNPQRVNVALTRARHCLWILGNERTLISSESIWGTLV 844
+IGF+ N +R NVA+TRA+ L ++GN L + ES WG +
Sbjct: 913 YISLDETFNIGFLKNEKRFNVAVTRAKSLLIMVGNPMILRTDES-WGRFI 961
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 155/339 (45%), Gaps = 61/339 (17%)
Query: 551 SKQLLKDFCFKRASLFFSTASSSYKLHSVKIEPLNF--LVIDEAAQLKESESTIPLQLAG 608
SK+LLK + + +T ++ +L S P F + IDE E ES + +AG
Sbjct: 602 SKKLLKPY-----RILITTLVTAGRLVSANFPPGYFSHVFIDECGHAVEPESVV--AIAG 654
Query: 609 I------------NHAVLIGDECQLPAMVESKISDGASFGRSLFERLTLLN----HSKHL 652
+ VL GD QL + S ++ G SL ERL L N S
Sbjct: 655 LLTTMDPDTNPNGGQLVLAGDPQQLGPVPRSPLAAQHGLGTSLLERLMLHNALYAKSDEG 714
Query: 653 LDIQ--------YRMHPSISLFPNLQFYRNQI--LDGANVKSKSYEKHY--LPGTEFGPY 700
+ Q YR H +I PN FY +++ +G+ +++ + LP P
Sbjct: 715 YNPQFVTKLLWNYRSHKAILKVPNELFYDSELKAYEGSEPDVRNFYCTWEELPNRGV-PI 773
Query: 701 TFINIIGGRE-EFIYHSCRNMVEVSVVIKILQKLYKAW-------VGSKQMVSIGVVSPY 752
F + G E E S N E+ VV++ LQKL ++ + K+ IG++SPY
Sbjct: 774 IFHGVCGEDEREAKSPSFFNTAEIEVVVQYLQKLLQSQGRRGCPTISPKE---IGIISPY 830
Query: 753 TAQVVAIRKKIGSE----YENKDGFTVKVKSVDGFQGGEEDIIIISTVRC-------NTG 801
QV IR I S+ D +KV SV+ FQG E +I+ISTVR +
Sbjct: 831 RKQVEKIRLAITSKDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRSCSEYLQLDQT 890
Query: 802 GSIGFISNPQRVNVALTRARHCLWILGNERTLISSESIW 840
+GF+ NP+R+NVALTRA+ L ++GN ++S + W
Sbjct: 891 FRLGFLKNPKRLNVALTRAKALLIVVGNA-AVLSKDPHW 928
Score = 34.7 bits (78), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 275 LRWGPPGTGKTKTVSMLLFSLLRI--KCRTLACTPTNVAITELASRALRLVKESY 327
L +GPPGTGKT T+ + + R LAC P+N A L R L + Y
Sbjct: 513 LIFGPPGTGKTVTLVEAIKQVWSCFKDARILACAPSNSAADLLCQRLLTNIAPRY 567
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/288 (28%), Positives = 144/288 (50%), Gaps = 36/288 (12%)
Query: 568 STASSSYKLHSVKIEPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQL-PAMVE 626
+T ++ Y+ ++EP ++++EAA++ E+ + L A H +LIGD QL P+
Sbjct: 978 TTGAAKYRQILQQVEP-RIVIVEEAAEVLEAHTIATLSKA-CQHLILIGDHQQLRPSANV 1035
Query: 627 SKISDGASFGRSLFERLTLLNHSKHLLDIQYRMHPSISLFPNLQFYRN-----QILDGAN 681
++ + SLFERL +N L+ Q+RM P I+ Y++ +L
Sbjct: 1036 YDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMRPEIARLLTPHIYQDLENHPSVLKYEQ 1095
Query: 682 VKSKS----YEKHYLPGTEFGPYTFINIIGGREEFIYHSCRNMVEVSVVIKILQKLY-KA 736
+K S + +H P E I G+ S +N E V+++ Q L +
Sbjct: 1096 IKGVSSNLFFVEHNFPEQE--------IQEGK------SHQNQHEAHFVVELCQYLLCQE 1141
Query: 737 WVGSKQMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTV 796
++ S+ I +++ YT Q+ +RK + K +KV VD +QG E DII++S V
Sbjct: 1142 YLPSQ----ITILTTYTGQLFCLRKLMPV----KTFAGIKVHVVDKYQGEENDIILLSLV 1193
Query: 797 RCNTGGSIGFISNPQRVNVALTRARHCLWILGNERTLISSESIWGTLV 844
R N G +GF+ P R+ VAL+RA+ ++ +GN + +++ +W ++
Sbjct: 1194 RSNQEGKVGFLQIPNRICVALSRAKKGMYCIGNMQ-MLAKVPLWSRII 1240
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 136/303 (44%), Gaps = 50/303 (16%)
Query: 581 IEPLNFLVIDEAAQLKESESTIPLQLAGI----------NHAVLIGDECQLPAMVESKIS 630
I+ + IDEA E ES + +AG+ VL GD QL ++ S ++
Sbjct: 636 IDHFTHIFIDEAGHCMEPESLV--AIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLT 693
Query: 631 DGASFGRSLFERL----TLLNHSKHLLDIQ--------YRMHPSISLFPNLQFYRNQILD 678
G SL ERL +L D Q YR HP+I PN +Y ++
Sbjct: 694 QKHGLGYSLLERLLTYNSLYKKGPDGYDPQFITKLLRNYRSHPTILDIPNQLYYEGELQA 753
Query: 679 GANVKSKSYEKHY--LPGTEFGPYTFINIIGGRE-EFIYHSCRNMVEVSVVIKILQKLY- 734
A+V + + LP F P F ++G E E S N E + V L+ L
Sbjct: 754 CADVVDRERFCRWAGLPRQGF-PIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKLLLA 812
Query: 735 ------KAWVGSKQMVSIGVVSPYTAQVVAIR---KKIGSEYENKDGFT-VKVKSVDGFQ 784
KA + + S+GV+SPY QV IR K+ E D +KV SV+ FQ
Sbjct: 813 PSSKKGKARLSPR---SVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQ 869
Query: 785 GGEEDIIIISTVRCNTGG-------SIGFISNPQRVNVALTRARHCLWILGNERTLISSE 837
G E +I+ISTVR + ++GF+ NP+R NVA+TRA+ L I+GN L+ +
Sbjct: 870 GQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVGNP-LLLGHD 928
Query: 838 SIW 840
W
Sbjct: 929 PDW 931
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 140/307 (45%), Gaps = 50/307 (16%)
Query: 581 IEPLNFLVIDEAAQLKESESTIPLQLAGI----------NHAVLIGDECQLPAMVESKIS 630
I+ + IDEA E ES + +AG+ VL GD QL ++ S ++
Sbjct: 637 IDHFTHIFIDEAGHCMEPESLV--AIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRSPLA 694
Query: 631 DGASFGRSLFERL----TLLNHSKHLLDIQ--------YRMHPSISLFPNLQFYRNQILD 678
G SL ERL +L + D Q YR HP+I PN +Y ++
Sbjct: 695 LKHGLGYSLLERLLAYNSLYKKGPNGYDPQFITKLLRNYRSHPTILDIPNQLYYDGELQA 754
Query: 679 GANVKSKSYEKHY--LPGTEFGPYTFINIIGGRE-EFIYHSCRNMVEVSVVIKILQKLY- 734
A+V + + LP F P F ++G E E S N E + V L++L
Sbjct: 755 CADVVDRERFCRWEGLPQQGF-PIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLA 813
Query: 735 ------KAWVGSKQMVSIGVVSPYTAQVVAIR---KKIGSEYENKDGFT-VKVKSVDGFQ 784
KA + + ++GV+SPY QV IR K+ E D +KV SV+ FQ
Sbjct: 814 PSSKKGKARLSPR---NVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQ 870
Query: 785 GGEEDIIIISTVRCNTGG-------SIGFISNPQRVNVALTRARHCLWILGNERTLISSE 837
G E +I+ISTVR + ++GF+ NP+R NVA+TRA+ L ++GN L+ +
Sbjct: 871 GQERSVILISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNP-LLLGHD 929
Query: 838 SIWGTLV 844
W T +
Sbjct: 930 PDWKTFL 936
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 99/345 (28%), Positives = 153/345 (44%), Gaps = 58/345 (16%)
Query: 547 PCTTSKQLLKDFCF------KRASLFFSTASSSYKLHSVK--IEPLNFLVIDEAAQLKES 598
PC DF F + + +T ++ +L S + I+ + IDEA E
Sbjct: 594 PCCNWDAKKGDFVFPSKKKLQEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHAMEP 653
Query: 599 ESTIPLQLAGI----------NHAVLIGDECQLPAMVESKISDGASFGRSLFERLTLLN- 647
ES + +AG+ VL GD QL ++ ++ G SL ERL N
Sbjct: 654 ESLV--AIAGLMEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTFNA 711
Query: 648 ---------HSKHLLDI--QYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHY--LPG 694
+ + + + YR HP+I PN +Y ++ A+V + + LP
Sbjct: 712 LYKKGPDGYNPQFITKLLRNYRSHPTILDVPNRLYYDGELQACADVVDRERFCRWEGLPR 771
Query: 695 TEFGPYTFINIIGGRE-EFIYHSCRNMVEVSVVIKILQKLY-------KAWVGSKQMVSI 746
+F P F ++G E E S N E + V L++L KA + + S+
Sbjct: 772 QDF-PIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLLAPSSKKGKARLSPR---SV 827
Query: 747 GVVSPYTAQVVAIR---KKIGSEYENKDGFT-VKVKSVDGFQGGEEDIIIISTVRCNTGG 802
GV+SPY QV IR K+ + D +KV SV+ FQG E +I+ISTVR +
Sbjct: 828 GVISPYRKQVEKIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSF 887
Query: 803 -------SIGFISNPQRVNVALTRARHCLWILGNERTLISSESIW 840
++GF+ NP+R NVA+TRA+ L ++GN L+ + W
Sbjct: 888 VQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNP-LLLGHDPDW 931
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 138/311 (44%), Gaps = 51/311 (16%)
Query: 587 LVIDEAAQLKESESTIPLQL--AGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLT 644
++ DEA Q E E+ +P+ + + VL GD QL ++V S+I+ F S ERL
Sbjct: 945 VLFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFLERL- 1003
Query: 645 LLNHSKHLLDIQ-------------------YRMHPSISLFPNLQFYRNQILDGANVKSK 685
L S + D+Q YR PSI + FY ++++ + K
Sbjct: 1004 -LERSPYRKDLQRFPESSGYNPLVLTKLLYNYRALPSIMSIYSRLFYDDELIPVLSEKDS 1062
Query: 686 S-----------YEKHYLPGTEFGPYTFINIIG-GREEFIYHSCRNMVEVSVVIKILQKL 733
+E G + F IIG R+ S N EV V + L
Sbjct: 1063 RESRLLSKLRCVFESEKDIPQAHGTF-FYGIIGENRQNNDSPSWFNPQEVREVFLMTIAL 1121
Query: 734 YKAWVGSKQMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQGGEEDIIII 793
Y+A V + Q IG+++PY QV +R S + D K+ SV+ FQG E DII+I
Sbjct: 1122 YRANVTADQ---IGIITPYQKQVKMLR----SMFIGTDVVMPKIGSVEEFQGQERDIILI 1174
Query: 794 STVRC-------NTGGSIGFISNPQRVNVALTRARHCLWILGNERTLISSESIWGTLVCD 846
STVR + S+GF+ +R+NVA++RAR + I GN L++ + W L+
Sbjct: 1175 STVRSSEEILRMDARFSLGFVRCSKRLNVAVSRARAMMIIFGNPH-LLAVDECWRQLILF 1233
Query: 847 AKARQCFFKAD 857
+F D
Sbjct: 1234 CVKNNAYFGCD 1244
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 135/298 (45%), Gaps = 34/298 (11%)
Query: 585 NFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLT 644
+F ++DEA+Q+ + PL A + VL+GD QLP +V+S + SLF+RL
Sbjct: 758 DFCIVDEASQISQPICLGPLFFA--DRFVLVGDHQQLPPLVKSAEARELGMSESLFKRLE 815
Query: 645 LLNHSKHLLDIQYRMHPSISLFPNLQFYR-----------NQILDGANVKSKSYEKHYLP 693
+ L +QYRM+ I N Y N ++ ++K+ E +
Sbjct: 816 RNQEAVVQLTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVVQLPHIKTLLLELEFRE 875
Query: 694 GTE----------FGPYTFINI--IGGREEFIYHSCRNMVEVSVVIKILQKLYKAWVGSK 741
E P F+N I E N +E +V + + KA
Sbjct: 876 SQESMWIKDVLEPSNPVCFLNTEKIPALETEEKGGISNWIEAKLVFHLTKLYLKAGCRPS 935
Query: 742 QMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTG 801
IG+++PY Q+ K I + + + V+V +VD +QG ++ +II+S VR N
Sbjct: 936 ---DIGIIAPYRQQL----KMISNYFNSLSASAVEVNTVDKYQGRDKSVIIVSFVRSNID 988
Query: 802 GSIG-FISNPQRVNVALTRARHCLWILGNERTLISSESIWGTLVCDAKARQCFFKADE 858
G +G + + +R+NVALTRA+H L +LG TL + + L+C+ K + E
Sbjct: 989 GKLGDLLKDWRRLNVALTRAKHKLIMLGCVPTLNRFDCL-EQLICNLKTENQIYDLPE 1045
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 134/305 (43%), Gaps = 39/305 (12%)
Query: 562 RASLFFSTASSSYKLHSVKIEPLNF--LVIDEAAQLKESESTIPLQLAG--INHAVLIGD 617
R + +T SSS + + + +F + +DEA Q E E IPL L VL GD
Sbjct: 856 RFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGD 915
Query: 618 ECQLPAMVESKISDGASFGRSLFERL--------------TLLNHSKHL---LDIQYRMH 660
QL +++S+++ S ERL H+ L L YR H
Sbjct: 916 PMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSH 975
Query: 661 PSISLFPNLQFYRNQI---LDGANVKSK-SYEKHYLPGTEFGPYTFINIIGGR-EEFIYH 715
++ + P+ FY ++ D V S +EK LP F P F + G E
Sbjct: 976 EALLMLPSRLFYHRELEVCADPTVVTSLLGWEK--LPKKGF-PLIFHGVRGSEAREGKSP 1032
Query: 716 SCRNMVEVSVVIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFTV 775
S N E V++ L + IGV++PY QV IR + N D +
Sbjct: 1033 SWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVITPYRKQVEKIRILL----RNVDLMDI 1088
Query: 776 KVKSVDGFQGGEEDIIIISTVRCNTGGS------IGFISNPQRVNVALTRARHCLWILGN 829
KV SV+ FQG E +IIISTVR N +GF+SN +R NVA+TR + L +LGN
Sbjct: 1089 KVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPKALLIVLGN 1148
Query: 830 ERTLI 834
L+
Sbjct: 1149 PHVLV 1153
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 147/315 (46%), Gaps = 56/315 (17%)
Query: 562 RASLF---FSTASSS---YKLHSVKIEPLNFLVIDEAAQLKESESTIPLQL-AGIN-HAV 613
RAS F +T SS+ Y++ V++ + +DEA Q E E IPL L + IN V
Sbjct: 855 RASRFRIIITTCSSAGLFYQI-GVRVGYFTHVFVDEAGQASEPECLIPLGLISDINGQIV 913
Query: 614 LIGDECQLPAMVESKISDGASFGRSLFERLTLLNHSKHLLD------------------- 654
L GD QL +++S+++ S+ ERL ++ +L D
Sbjct: 914 LAGDPMQLGPVIKSRLAMAYGLNVSMLERL--MSRPAYLRDENAFGACGAYNPLLVTKLV 971
Query: 655 IQYRMHPSISLFPNLQFYRNQILDGANVKSKS----YEKHYLPGTEFGPYTFINIIG--- 707
YR H ++ P+ FY ++ A+ K + +EK LP F P F + G
Sbjct: 972 KNYRSHSALLALPSRLFYHRELEVCADPKVVTSLLGWEK--LPRKGF-PLIFHGVRGNEA 1028
Query: 708 --GREEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAIRKKIGS 765
GR + S V+V +L + + V SK IGV++PY QV +KI
Sbjct: 1029 REGRSPS-WFSPAEAVQVMRYCCLLARSVSSQVSSKD---IGVITPYRKQV----EKIKI 1080
Query: 766 EYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGS------IGFISNPQRVNVALTR 819
N D +KV SV+ FQG E +I+ISTVR N +GF+SN +R NVA+TR
Sbjct: 1081 LLRNVDLTDIKVGSVEEFQGQEYLVIVISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITR 1140
Query: 820 ARHCLWILGNERTLI 834
+ L ILGN L+
Sbjct: 1141 PKALLIILGNPHVLV 1155
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 94.0 bits (232), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 100/377 (26%), Positives = 176/377 (46%), Gaps = 46/377 (12%)
Query: 482 DSFRSLLFQKNVVSEELEKLFSHSVDEDFSLAFVGKRYLLQLHQ--RRSECLSVLRNLWN 539
D R L + E+E ++ + + L R LQL+Q R + LS R
Sbjct: 903 DELRKLNTMTAAEANEIEDVWQLDLSSRWQLY----RLWLQLYQADTRRKILSYERQYRT 958
Query: 540 SLDEL-NLPCTTSKQLLKDFCFKRASLFFSTASSSYKLHSVKIEPLNFLVIDEAAQLKES 598
S + + L +LKD + +T ++ Y+ K+EP ++++EAA++ E+
Sbjct: 959 SAERMAELRLQEDLHILKD---AQVVGMTTTGAAKYRQILQKVEP-RIVIVEEAAEVLEA 1014
Query: 599 ESTIPLQLAGINHAVLIGDECQL-PAMVESKISDGASFGRSLFERLTLLNHSKHLLDIQY 657
+ L A H +LIGD QL P+ ++ + SLFERL +N L+ Q+
Sbjct: 1015 HTIATLSKA-CQHLILIGDHQQLRPSANVYDLAKNFNLEVSLFERLVKVNIPFVRLNYQH 1073
Query: 658 RMHPSISLFPNLQFYRN-----QILDGANVKSKS----YEKHYLPGTEFGPYTFINIIGG 708
RM P I+ Y++ +L +K S + +H P E I G
Sbjct: 1074 RMCPEIARLLTPHIYQDLENHPSVLKYEKIKGVSSNLFFVEHNFPEQE--------IQEG 1125
Query: 709 REEFIYHSCRNMVEVSVVIKILQK-LYKAWVGSKQMVSIGVVSPYTAQVVAIRKKIGSEY 767
+ S +N E V+++ + L + ++ S+ I +++ YT Q+ +RK + +
Sbjct: 1126 K------SHQNQHEAHFVVELCKYFLCQEYLPSQ----ITILTTYTGQLFCLRKLMPA-- 1173
Query: 768 ENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRARHCLWIL 827
K V+V VD +QG E DII++S VR N G +GF+ R+ VAL+RA+ ++ +
Sbjct: 1174 --KTFAGVRVHVVDKYQGEENDIILLSLVRSNQEGKVGFLQISNRICVALSRAKKGMYCI 1231
Query: 828 GNERTLISSESIWGTLV 844
GN + +++ +W ++
Sbjct: 1232 GNMQ-MLAKVPLWSKII 1247
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin assembly 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrr1 PE=1 SV=2
Length = 999
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 86/301 (28%), Positives = 139/301 (46%), Gaps = 37/301 (12%)
Query: 558 FCFKRASLFF---------STASSSYKLHSVKIEPLNFLVIDEAAQLKESESTIPLQLAG 608
F KRA++ +T + Y+ +I P I+EAA + E IP
Sbjct: 671 FSNKRAAILLRGANVIGMTTTGLNKYRDILERINP-KICFIEEAADVLEG-PIIPAVFPS 728
Query: 609 INHAVLIGDECQL-PAMVESKI-SDGASFGRSLFERLTLLNHSKHLLDIQYRMHPSI--- 663
+ VLIGD QL P + D + S+FERL + L +Q RMHP I
Sbjct: 729 LEQLVLIGDHKQLRPGCSTYALRQDPFNLSISMFERLVENDMEYTRLTMQRRMHPQIRRL 788
Query: 664 --SLFPNLQFYRNQILDGANVKSKSYEKHY--LPGTEFGPYTFINIIGGREEFIYHSCRN 719
S++ +L Y K++ +PG F+ + + S N
Sbjct: 789 VSSVYEDLSDY-------------EITKYWPSIPGMGEIRRFFLTHSRIEDNDGFASKIN 835
Query: 720 MVEVSVVIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKS 779
+ E ++++ L V ++ I ++ Y AQ I +++ SE N++ +KV +
Sbjct: 836 LFEAQMLVQFAVYLINNGVEPQK---ITCLTFYAAQKDLI-ERLLSESLNREKHFIKVAT 891
Query: 780 VDGFQGGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRARHCLWILGNERTLISSESI 839
VDG+QG E D++++S VR N +GF+S+P RV V+L+RAR L+I GN + + S +
Sbjct: 892 VDGYQGEENDVVLLSLVRNNDRTEVGFLSSPHRVCVSLSRARRGLFIFGNAQLVAESNPL 951
Query: 840 W 840
W
Sbjct: 952 W 952
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 128/269 (47%), Gaps = 34/269 (12%)
Query: 585 NFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLT 644
+F ++DEA+Q+ + PL + VL+GD QLP +V ++ + SLF+RL
Sbjct: 757 DFCIVDEASQISQPVCLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLE 814
Query: 645 LLNHSKHLLDIQYRMHPSISLFPNLQFYR-----------NQILDGANVKSKSYEKHYLP 693
++ L +QYRM+ I N Y N +++ N K E +
Sbjct: 815 QNKNAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLPNFKDVKLELEFYA 874
Query: 694 GTEFGPYT-----------FINI--IGGREEFIYHSCRNMVEVSVVIKILQKLYKAWVGS 740
P+ F+N + E+ N++E +V+ + KA G
Sbjct: 875 DYSENPWLIAAFEPNNPVCFLNTHKVPAPEQVEKGGVSNIMEAKLVVFLTSVFIKA--GC 932
Query: 741 KQMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNT 800
K IG+++PY Q+ I + ++ G V+V +VD +QG ++ I+++S VR N
Sbjct: 933 KP-SDIGIIAPYRQQLKVISDLLA---QSSVGM-VEVNTVDRYQGRDKSIVVVSFVRSNE 987
Query: 801 GGSIG-FISNPQRVNVALTRARHCLWILG 828
G++G + + +R+NVA+TRA+H L +LG
Sbjct: 988 DGTLGELLKDWRRLNVAITRAKHKLILLG 1016
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 127/277 (45%), Gaps = 42/277 (15%)
Query: 585 NFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLT 644
+F ++DEA+Q+ + PL + VL+GD QLP +V ++ + SLF+RL
Sbjct: 757 DFCIVDEASQISQPICLGPLFFS--RRFVLVGDHKQLPPLVLNREARALGMSESLFKRLE 814
Query: 645 LLNHSKHLLDIQYRMHPSISLFPNLQFYR-----------NQILDGANVKSKSYE----- 688
+ L IQYRM+ I N Y N ++ N+K E
Sbjct: 815 RNESAVVQLTIQYRMNRKIMSLSNKLTYEGKLECGSDRVANAVITLPNLKDVRLEFYADY 874
Query: 689 --KHYLPGT--EFGPYTFINI--IGGREEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQ 742
+L G P F+N + E+ N+ E +++ + KA
Sbjct: 875 SDNPWLAGVFEPDNPVCFLNTDKVPAPEQIENGGVSNVTEARLIVFLTSTFIKAGCSPS- 933
Query: 743 MVSIGVVSPYTAQVVAI-----RKKIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVR 797
IG+++PY Q+ I R +G V+V +VD +QG ++ +I++S VR
Sbjct: 934 --DIGIIAPYRQQLRTITDLLARSSVG---------MVEVNTVDKYQGRDKSLILVSFVR 982
Query: 798 CNTGGSIG-FISNPQRVNVALTRARHCLWILGNERTL 833
N G++G + + +R+NVA+TRA+H L +LG+ +L
Sbjct: 983 SNEDGTLGELLKDWRRLNVAITRAKHKLILLGSVSSL 1019
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus
GN=Dna2 PE=2 SV=2
Length = 1062
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 127/279 (45%), Gaps = 44/279 (15%)
Query: 585 NFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLT 644
+F ++DEA+Q+ + PL + VL+GD QLP +V ++ + SLF+RL
Sbjct: 758 DFCIVDEASQISQPVCLGPLFFS--RRFVLVGDHQQLPPLVVNREARALGMSESLFKRLE 815
Query: 645 LLNHSKHLLDIQYRMHPSISLFPNLQFYR-----------NQILDGANVKSKSY------ 687
+ L +QYRM+ I N Y N +L N+K
Sbjct: 816 RNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNLKDARLSLQLYA 875
Query: 688 ---EKHYLPGT--EFGPYTFINI--IGGREEFIYHSCRNMVEVSVVIKILQKLYKAWVGS 740
+ +L G P F+N + E+ N+ E +++ + KA
Sbjct: 876 DYSDSPWLAGVLEPDNPVCFLNTDKVPAPEQVENGGVSNVTEARLIVFLTSTFIKAGCSP 935
Query: 741 KQMVSIGVVSPYTAQVVAI-----RKKIGSEYENKDGFTVKVKSVDGFQGGEEDIIIIST 795
IGV++PY Q+ I R +G V+V +VD +QG ++ +I++S
Sbjct: 936 SD---IGVIAPYRQQLRIISDLLARSSVG---------MVEVNTVDKYQGRDKSLILVSF 983
Query: 796 VRCNTGGSIG-FISNPQRVNVALTRARHCLWILGNERTL 833
VR N G++G + + +R+NVALTRA+H L +LG+ +L
Sbjct: 984 VRSNEDGTLGELLKDWRRLNVALTRAKHKLILLGSVSSL 1022
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens
GN=DNA2 PE=1 SV=3
Length = 1060
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/269 (26%), Positives = 126/269 (46%), Gaps = 35/269 (13%)
Query: 585 NFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLT 644
+F ++DEA+Q+ + PL + VL+GD QLP +V ++ + SLF+RL
Sbjct: 757 DFCIVDEASQISQPICLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFKRLE 814
Query: 645 LLNHSKHLLDIQYRMHPSISLFPNLQFYRNQILDGANVKSKSY----------------- 687
+ L +QYRM+ I N Y ++ G++ + +
Sbjct: 815 QNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELEFYA 874
Query: 688 ---EKHYLPGT--EFGPYTFINI--IGGREEFIYHSCRNMVEVSVVIKILQKLYKAWVGS 740
+ +L G P F+N + E+ N+ E +++ + KA
Sbjct: 875 DYSDNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAGCSP 934
Query: 741 KQMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNT 800
IG+++PY Q+ KI ++ + V+V +VD +QG ++ I+++S VR N
Sbjct: 935 S---DIGIIAPYRQQL-----KIINDLLARSIGMVEVNTVDKYQGRDKSIVLVSFVRSNK 986
Query: 801 GGSIG-FISNPQRVNVALTRARHCLWILG 828
G++G + + +R+NVA+TRA+H L +LG
Sbjct: 987 DGTVGELLKDWRRLNVAITRAKHKLILLG 1015
>sp|Q09449|YQ12_CAEEL Uncharacterized ATP-dependent helicase C05C10.2 OS=Caenorhabditis
elegans GN=C05C10.2 PE=2 SV=1
Length = 1551
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 161/345 (46%), Gaps = 36/345 (10%)
Query: 558 FCFKRASLFFSTASSSYKLHSVKIEPLNFLVIDEAAQLKESESTIPLQLAGINHAV--LI 615
F + L TA S+ L ++ + + + IDEA+QL +E T+ L N+A LI
Sbjct: 1178 FMIYKPDLVMVTADSAKGLLNI-LRDVCAVQIDEASQL--AECTLLGLLKSFNNASFGLI 1234
Query: 616 GDECQLPAM----VESKISD---GASFGRSLFERLTLLNHSKHLLDIQYRMHPSISLFPN 668
GD QLP +E K+ D G + R++ E++ + +++ YR HP + +
Sbjct: 1235 GDIHQLPPYCEEGLEGKLKDFGIGNTMERAIKEKMFPVCTLRNV----YRCHPKTTELLS 1290
Query: 669 LQFYRNQILDGANVKSKS----YEKHYLPGTEFGPYTFINIIGGREEFIYHSCRNMVEVS 724
FY ++ G + ++S + P +F P F+N G + + S N E S
Sbjct: 1291 ELFYDGALVSGVSELARSDFMTKRDDFWPNPKF-PMMFVNNTGASTK-MGTSTSNSSEKS 1348
Query: 725 VVIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQ 784
+V +I+Q L IGV+S Y+AQ + E+ G VK +VD FQ
Sbjct: 1349 IVGEIVQNLINDPRNPVNPSDIGVISFYSAQTSILT-------EHLRGSGVKCGTVDAFQ 1401
Query: 785 GGEEDIIIISTVRCNTGGSIG-FISNPQRVNVALTRARHCLWILGNERTLISSESIWGTL 843
G E++III+ C+T I F+ R+NVA++RA+ I+G+ L + + W T+
Sbjct: 1402 GSEKEIIIM----CSTNERISDFMQLSNRLNVAMSRAKQVTIIIGHLDGLRRA-NYWSTI 1456
Query: 844 VCDAKARQCFFKADEDRNLAKARLEVSKESVEIDAESLTSRSQRG 888
V + A+ D + R +VS S + + S S+ QR
Sbjct: 1457 VNKIEQNGNLVNAN-DWYQNQRRNKVSLSSYPLISTSRQSKQQRA 1500
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz PE=2
SV=1
Length = 1860
Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 89/307 (28%), Positives = 138/307 (44%), Gaps = 45/307 (14%)
Query: 561 KRASLFFSTASSSYKLHSVKIEPLNF--LVIDEAAQLKESESTIPLQLA-GINHAVLIGD 617
+R + T S+S L + +EP F +++DEAAQ E E+ +PL LA VL GD
Sbjct: 756 ERHRVVVVTLSTSQYLCQLDLEPGIFTHILLDEAAQAMECETIMPLALAVKSTRVVLAGD 815
Query: 618 ECQLPAMVESKISDGASFGRSLFERLTLLNHSKH----LLDIQYRMHPSISLFPNLQFYR 673
QL V S+ + + SL +RL S++ LL YR H +I + + FY
Sbjct: 816 HMQLSPFVYSEFARERNLHVSLLDRLYEHYPSEYPCRILLCENYRSHEAIINYTSDLFYE 875
Query: 674 NQILDGANVKSKSYEKHYLPGTEFGPYTFINIIG-GREEFIYHSCRNMVEVSVVIKILQK 732
+++ P +F P TF G +E + N EV +++ +++
Sbjct: 876 GKLMASGKQP---------PHKDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEE 926
Query: 733 LYKAWV---GSKQMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQGGEED 789
+ K W G + SIGVVSPY QV IR +E K V V+ V QG +
Sbjct: 927 MRKKWPVSWGKLEEGSIGVVSPYADQVFRIR----AELRKKRMSEVSVERVLNVQGKQFR 982
Query: 790 IIIISTVR----CNTGGSI-----------------GFISNPQRVNVALTRARHCLWILG 828
++ +STVR C + GF+SN + +N A+TRA+ + ++G
Sbjct: 983 VLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVG 1042
Query: 829 NERTLIS 835
+ L S
Sbjct: 1043 DPIALCS 1049
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 121/245 (49%), Gaps = 20/245 (8%)
Query: 585 NFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLT 644
+F ++DEA+Q+ + PL + VL+GD QLP +V++ + SLF+RL
Sbjct: 726 DFCIVDEASQISQPICLGPLFCS--KRFVLVGDHQQLPPLVQNSEARDLGMSESLFKRLE 783
Query: 645 LLNHSKHLLDIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTEFGPYTFIN 704
++ L +QYRM+ I N Y ++ G+ S + LP N
Sbjct: 784 QNQNAVVQLTVQYRMNSKIMSLSNKLVYEGKLECGSEKVSNATAN--LP----------N 831
Query: 705 IIGGREEFIYHSCRNMVEVSVVIKILQKLYKAWVGSKQMVSIGVVSPYTAQVVAIRKKIG 764
+ + EF S + EV K + L G + IG++SPY Q+ I +
Sbjct: 832 LKMLKLEFADASKTWLKEVLEPDKPVCFLNTEKAGCRPS-DIGIISPYRHQLKVITDLMA 890
Query: 765 SEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGSIG-FISNPQRVNVALTRARHC 823
EN+ V+V ++D +QG ++ III+S VR + ++G + + +R+NVA+TRA+H
Sbjct: 891 RLKENR----VEVNTIDKYQGRDKSIIIVSFVRNSNDENLGALLKDWRRLNVAITRAKHK 946
Query: 824 LWILG 828
L ++G
Sbjct: 947 LIMVG 951
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dna2 PE=1 SV=2
Length = 1397
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 143/319 (44%), Gaps = 45/319 (14%)
Query: 554 LLKDFCFKRASLFFSTASSSYKLHSVKI---------------EPLNFLVIDEAAQLKES 598
L+K+FC + F AS + +I ++ +IDEA+Q+
Sbjct: 1014 LVKEFCLTEGTTFDDLASLKHFYEDPQIVACSSLGVYHSIFNKRKFDYCIIDEASQIPLP 1073
Query: 599 ESTIPLQLAGINHAVLIGDECQLPAMVE-SKISDGASFGRSLFERLTLLNHSKHLLDIQY 657
PLQLA VL+GD QLP +V+ S+ S + L +QY
Sbjct: 1074 ICLGPLQLA--EKFVLVGDHYQLPPLVKNSRTSKDGLSLSLFKLLSEKHPEAVTTLRLQY 1131
Query: 658 RMHPSISLFPNLQFYRNQILDGANVKS-------KSYEKHYLPGTEFGPYTFINIIGGRE 710
RM+ I+ + Y ++ G+ S K++ LP + + +I
Sbjct: 1132 RMNEDINSLSSELIYGGNLVCGSKTISQKKLILPKAHLSDGLPDSSSSLHWVNKLINPSH 1191
Query: 711 EFIYHSCRNMVEV-SVVIKILQKLYKAWV-----------GSKQMVSIGVVSPYTAQVVA 758
I+ + +++ V S IL+ +A++ G KQ SIG++S Y +QV
Sbjct: 1192 SVIFFNTDDILGVESKTNNILENHTEAFLIEQAVSSFLERGVKQS-SIGIISIYKSQVEL 1250
Query: 759 IRKKIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGSIG-FISNPQRVNVAL 817
+ K + S E +++ +VD +QG ++DII+IS VR N+ +G + + R+NVAL
Sbjct: 1251 LSKNLKSFTE------IEINTVDRYQGRDKDIILISFVRSNSKNLVGELLRDWHRLNVAL 1304
Query: 818 TRARHCLWILGNERTLISS 836
+RA+ + G+ TL SS
Sbjct: 1305 SRAKVKCIMFGSLSTLSSS 1323
>sp|Q6DFV5|HELZ_MOUSE Probable helicase with zinc finger domain OS=Mus musculus GN=Helz
PE=1 SV=2
Length = 1964
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 134/300 (44%), Gaps = 47/300 (15%)
Query: 569 TASSSYKLHSVKIEP--LNFLVIDEAAQLKESESTIPLQLAGIN-HAVLIGDECQLPAMV 625
T S+S L + +EP +++DEAAQ E E+ +PL LA N VL GD QL V
Sbjct: 771 TLSTSQYLCQLDLEPGFFTHVLLDEAAQAMECETIMPLALATKNTRIVLAGDHMQLSPFV 830
Query: 626 ESKISDGASFGRSLFERLTLLNHSKH----LLDIQYRMHPSISLFPNLQFYRNQILDGAN 681
S+ + + SL +RL ++ LL YR H +I + + FY +++ A+
Sbjct: 831 YSEFARERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLM--AS 888
Query: 682 VKSKSYEKHYLPGTEFGPYTFINIIG-----GREEFIYHSCRNMVEVSVVIKILQKLYKA 736
K +++ +F P TF G Y++ V V ++ +K A
Sbjct: 889 GKQPAHK-------DFYPLTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVA 941
Query: 737 WVGSKQMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTV 796
W G SIGVV+PY QV IR +E K V V+ V QG + ++ +STV
Sbjct: 942 W-GKLDDGSIGVVTPYADQVFRIR----AELRKKRLSDVNVERVLNVQGKQFRVLFLSTV 996
Query: 797 R----CNTGGS-----------------IGFISNPQRVNVALTRARHCLWILGNERTLIS 835
R C + GF+SN + +N A+TRA+ + ++G+ L S
Sbjct: 997 RTRHTCKHKQTPIKKKEQLLEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPVALCS 1056
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,773,352
Number of Sequences: 539616
Number of extensions: 21161001
Number of successful extensions: 54437
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 54080
Number of HSP's gapped (non-prelim): 259
length of query: 1382
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1252
effective length of database: 121,419,379
effective search space: 152017062508
effective search space used: 152017062508
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)