Query 048652
Match_columns 1382
No_of_seqs 476 out of 2473
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 20:24:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b3f_X DNA-binding protein smu 100.0 8.6E-78 2.9E-82 762.9 47.9 606 48-857 2-638 (646)
2 2xzl_A ATP-dependent helicase 100.0 1.1E-67 3.7E-72 679.9 52.7 613 26-857 164-790 (802)
3 2gk6_A Regulator of nonsense t 100.0 1.9E-67 6.7E-72 664.9 50.4 598 42-857 1-612 (624)
4 2wjy_A Regulator of nonsense t 100.0 1.2E-66 4.2E-71 669.2 52.6 603 37-857 172-788 (800)
5 3lfu_A DNA helicase II; SF1 he 99.9 1.2E-25 4E-30 285.1 28.7 151 582-761 212-365 (647)
6 3e1s_A Exodeoxyribonuclease V, 99.9 1.5E-26 5.3E-31 288.3 18.0 201 582-834 278-545 (574)
7 3upu_A ATP-dependent DNA helic 99.9 5.4E-25 1.8E-29 268.4 19.0 84 234-319 10-94 (459)
8 1pjr_A PCRA; DNA repair, DNA r 99.9 2.8E-24 9.7E-29 275.8 25.3 153 582-763 215-371 (724)
9 1uaa_A REP helicase, protein ( 99.9 1.7E-23 5.9E-28 266.7 23.6 144 582-755 206-354 (673)
10 1w36_D RECD, exodeoxyribonucle 99.9 1.9E-22 6.3E-27 253.8 19.1 66 251-323 151-220 (608)
11 3u4q_A ATP-dependent helicase/ 99.8 4.1E-19 1.4E-23 239.7 33.1 70 247-325 8-83 (1232)
12 3vkw_A Replicase large subunit 99.8 4.7E-20 1.6E-24 220.1 16.2 199 583-848 234-434 (446)
13 1w36_B RECB, exodeoxyribonucle 99.7 4.6E-16 1.6E-20 209.5 23.7 172 582-763 376-571 (1180)
14 3dmn_A Putative DNA helicase; 99.4 9.9E-13 3.4E-17 139.5 9.3 144 654-830 2-154 (174)
15 3u4q_B ATP-dependent helicase/ 99.1 7E-10 2.4E-14 149.7 19.7 152 585-766 203-366 (1166)
16 3b6e_A Interferon-induced heli 97.7 6.3E-05 2.1E-09 80.7 8.4 70 246-322 30-106 (216)
17 2gxq_A Heat resistant RNA depe 97.7 0.00011 3.6E-09 78.7 9.6 69 248-323 22-96 (207)
18 1rif_A DAR protein, DNA helica 97.6 0.00013 4.5E-09 82.4 9.2 68 248-322 112-180 (282)
19 2pl3_A Probable ATP-dependent 97.5 0.00025 8.5E-09 77.7 10.0 69 248-323 46-121 (236)
20 1qde_A EIF4A, translation init 97.5 0.00025 8.6E-09 76.9 9.4 69 248-323 35-106 (224)
21 2fz4_A DNA repair protein RAD2 97.5 0.00021 7.3E-09 79.0 9.0 66 246-321 90-155 (237)
22 1hv8_A Putative ATP-dependent 97.5 0.00026 8.9E-09 81.9 9.9 70 248-323 27-98 (367)
23 1vec_A ATP-dependent RNA helic 97.4 0.00031 1.1E-08 75.0 9.0 70 248-324 24-96 (206)
24 1t6n_A Probable ATP-dependent 97.4 0.00036 1.2E-08 75.5 9.3 68 249-323 36-106 (220)
25 3bor_A Human initiation factor 97.4 0.00023 7.8E-09 78.4 7.7 68 249-323 52-122 (237)
26 1q0u_A Bstdead; DEAD protein, 97.4 0.00033 1.1E-08 75.9 8.6 70 248-324 25-97 (219)
27 3iuy_A Probable ATP-dependent 97.4 0.00049 1.7E-08 75.0 9.9 68 248-322 41-117 (228)
28 3dkp_A Probable ATP-dependent 97.3 0.00055 1.9E-08 75.4 9.7 70 248-324 50-123 (245)
29 3ber_A Probable ATP-dependent 97.3 0.00071 2.4E-08 75.2 10.3 70 248-324 64-136 (249)
30 3ly5_A ATP-dependent RNA helic 97.3 0.00049 1.7E-08 77.1 8.8 69 249-324 76-151 (262)
31 2z0m_A 337AA long hypothetical 97.2 0.00072 2.5E-08 77.3 9.9 66 248-323 15-80 (337)
32 3fe2_A Probable ATP-dependent 97.2 0.00098 3.3E-08 73.5 10.5 71 248-325 50-128 (242)
33 3oiy_A Reverse gyrase helicase 97.2 0.0005 1.7E-08 81.8 8.6 68 248-322 20-87 (414)
34 2oca_A DAR protein, ATP-depend 97.2 0.00055 1.9E-08 83.8 8.7 68 248-322 112-180 (510)
35 1wrb_A DJVLGB; RNA helicase, D 97.2 0.0011 3.8E-08 73.4 10.4 69 248-323 44-124 (253)
36 1s2m_A Putative ATP-dependent 97.2 0.00075 2.6E-08 79.5 9.4 69 249-324 43-114 (400)
37 3pey_A ATP-dependent RNA helic 97.1 0.00084 2.9E-08 78.4 9.2 71 248-323 26-99 (395)
38 3ec2_A DNA replication protein 97.1 0.001 3.6E-08 69.7 8.4 56 251-306 16-74 (180)
39 2oxc_A Probable ATP-dependent 97.1 0.0012 4.3E-08 72.0 9.3 68 249-323 46-116 (230)
40 2w58_A DNAI, primosome compone 97.0 0.00075 2.6E-08 72.0 7.1 55 252-306 32-89 (202)
41 3eiq_A Eukaryotic initiation f 97.0 0.0013 4.4E-08 77.7 9.1 70 248-324 61-133 (414)
42 3llm_A ATP-dependent RNA helic 97.0 0.0016 5.4E-08 71.6 9.1 67 249-322 61-132 (235)
43 1xti_A Probable ATP-dependent 97.0 0.0013 4.5E-08 77.0 8.9 68 249-323 30-100 (391)
44 3te6_A Regulatory protein SIR3 96.9 0.00049 1.7E-08 79.5 4.8 45 252-296 26-70 (318)
45 2j0s_A ATP-dependent RNA helic 96.9 0.0013 4.6E-08 77.7 8.7 68 249-323 59-129 (410)
46 3mkq_A Coatomer beta'-subunit; 96.9 0.001 3.5E-08 85.1 8.1 83 936-1018 681-773 (814)
47 2va8_A SSO2462, SKI2-type heli 96.9 0.0011 3.7E-08 84.9 8.1 67 248-320 29-96 (715)
48 1z63_A Helicase of the SNF2/RA 96.9 0.0029 1E-07 77.2 11.6 71 247-321 35-107 (500)
49 3tbk_A RIG-I helicase domain; 96.9 0.0024 8.2E-08 78.2 10.9 70 248-324 3-77 (555)
50 1fuu_A Yeast initiation factor 96.9 0.0013 4.5E-08 77.0 8.0 69 248-323 42-113 (394)
51 3fht_A ATP-dependent RNA helic 96.9 0.0018 6.1E-08 76.3 9.2 72 248-324 46-120 (412)
52 4a2p_A RIG-I, retinoic acid in 96.8 0.0026 8.8E-08 78.2 10.4 72 247-325 5-81 (556)
53 1gm5_A RECG; helicase, replica 96.8 0.0023 7.8E-08 82.5 10.1 78 246-324 365-442 (780)
54 1wp9_A ATP-dependent RNA helic 96.8 0.0025 8.4E-08 76.1 9.7 67 248-322 8-75 (494)
55 4a4z_A Antiviral helicase SKI2 96.8 0.0021 7.1E-08 85.3 9.8 71 246-323 36-106 (997)
56 2fwr_A DNA repair protein RAD2 96.8 0.002 6.9E-08 78.0 8.6 65 247-321 91-155 (472)
57 2xgj_A ATP-dependent RNA helic 96.7 0.0033 1.1E-07 83.4 10.6 71 247-324 84-154 (1010)
58 2i4i_A ATP-dependent RNA helic 96.7 0.0036 1.2E-07 73.9 10.0 70 248-324 36-126 (417)
59 2p6r_A Afuhel308 helicase; pro 96.7 0.0011 3.6E-08 84.9 5.6 65 249-320 25-89 (702)
60 3bos_A Putative DNA replicatio 96.7 0.0027 9.2E-08 68.8 7.9 55 250-308 35-89 (242)
61 3l9o_A ATP-dependent RNA helic 96.7 0.0029 1E-07 84.7 9.6 73 245-324 180-252 (1108)
62 2zj8_A DNA helicase, putative 96.7 0.0013 4.3E-08 84.4 5.9 66 249-320 23-89 (720)
63 1z3i_X Similar to RAD54-like; 96.6 0.022 7.4E-07 72.1 16.6 74 248-322 54-136 (644)
64 1l8q_A Chromosomal replication 96.6 0.0037 1.3E-07 71.9 8.6 39 270-308 36-74 (324)
65 1jbk_A CLPB protein; beta barr 96.5 0.0038 1.3E-07 64.6 7.6 42 252-297 28-69 (195)
66 3i5x_A ATP-dependent RNA helic 96.5 0.005 1.7E-07 76.3 9.6 72 248-324 93-171 (563)
67 2qgz_A Helicase loader, putati 96.5 0.0035 1.2E-07 72.1 7.5 54 253-306 132-188 (308)
68 3fho_A ATP-dependent RNA helic 96.4 0.0018 6.3E-08 79.5 5.3 70 249-323 141-213 (508)
69 4gl2_A Interferon-induced heli 96.4 0.0027 9.3E-08 80.8 6.9 71 247-324 5-82 (699)
70 3fmp_B ATP-dependent RNA helic 96.4 0.0043 1.5E-07 75.3 8.3 72 248-324 113-187 (479)
71 3sqw_A ATP-dependent RNA helic 96.4 0.0056 1.9E-07 76.4 9.5 72 248-324 42-120 (579)
72 3h1t_A Type I site-specific re 96.4 0.0034 1.2E-07 78.4 7.6 68 247-316 176-252 (590)
73 3fmo_B ATP-dependent RNA helic 96.4 0.0057 2E-07 69.9 8.7 71 248-323 113-186 (300)
74 4ddu_A Reverse gyrase; topoiso 96.4 0.0044 1.5E-07 83.0 8.6 69 247-322 76-144 (1104)
75 2eyq_A TRCF, transcription-rep 96.3 0.0074 2.5E-07 81.2 10.5 76 247-323 601-676 (1151)
76 2p65_A Hypothetical protein PF 96.3 0.0043 1.5E-07 64.2 6.4 42 252-297 28-69 (187)
77 3u61_B DNA polymerase accessor 96.3 0.0047 1.6E-07 70.9 7.4 79 237-321 15-95 (324)
78 2qby_B CDC6 homolog 3, cell di 96.3 0.0065 2.2E-07 71.0 8.4 48 251-298 25-72 (384)
79 4a2q_A RIG-I, retinoic acid in 96.3 0.0089 3E-07 77.5 10.4 72 247-325 246-322 (797)
80 2db3_A ATP-dependent RNA helic 96.3 0.0091 3.1E-07 71.7 9.8 68 249-323 78-153 (434)
81 2xau_A PRE-mRNA-splicing facto 96.2 0.0069 2.3E-07 78.2 8.7 66 251-322 95-163 (773)
82 2v1u_A Cell division control p 96.1 0.0067 2.3E-07 70.7 7.5 48 251-298 24-71 (387)
83 2ykg_A Probable ATP-dependent 96.1 0.011 3.7E-07 75.2 9.8 71 247-324 11-86 (696)
84 2chg_A Replication factor C sm 96.1 0.0066 2.2E-07 64.4 6.5 45 251-299 22-66 (226)
85 2orw_A Thymidine kinase; TMTK, 96.0 0.0049 1.7E-07 65.4 5.3 38 271-308 3-40 (184)
86 1iqp_A RFCS; clamp loader, ext 96.0 0.0071 2.4E-07 68.9 6.9 57 238-298 15-73 (327)
87 2dr3_A UPF0273 protein PH0284; 96.0 0.0079 2.7E-07 65.6 6.8 49 271-320 23-71 (247)
88 3syl_A Protein CBBX; photosynt 96.0 0.0094 3.2E-07 67.7 7.6 39 270-308 66-108 (309)
89 1fnn_A CDC6P, cell division co 95.9 0.01 3.5E-07 69.3 7.8 55 251-305 22-79 (389)
90 1sxj_E Activator 1 40 kDa subu 95.9 0.0055 1.9E-07 71.1 5.3 60 238-298 4-63 (354)
91 2z4s_A Chromosomal replication 95.9 0.0078 2.7E-07 72.7 6.8 54 255-308 114-169 (440)
92 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.0082 2.8E-07 66.3 6.4 45 251-295 11-63 (262)
93 3h4m_A Proteasome-activating n 95.9 0.0058 2E-07 68.7 5.2 45 250-294 21-74 (285)
94 1sxj_C Activator 1 40 kDa subu 95.8 0.0063 2.1E-07 70.6 5.4 59 237-299 14-74 (340)
95 1tue_A Replication protein E1; 95.8 0.0039 1.3E-07 67.4 3.2 24 272-295 59-82 (212)
96 2b8t_A Thymidine kinase; deoxy 95.8 0.0067 2.3E-07 66.6 5.1 40 270-309 11-50 (223)
97 4a2w_A RIG-I, retinoic acid in 95.8 0.013 4.6E-07 77.2 8.8 71 247-324 246-321 (936)
98 3n70_A Transport activator; si 95.8 0.0053 1.8E-07 62.2 3.9 30 270-299 23-52 (145)
99 3mwy_W Chromo domain-containin 95.7 0.036 1.2E-06 71.9 12.5 72 247-322 234-308 (800)
100 1a5t_A Delta prime, HOLB; zinc 95.7 0.012 4.2E-07 68.1 7.4 47 252-298 5-51 (334)
101 1ofh_A ATP-dependent HSL prote 95.7 0.007 2.4E-07 68.5 5.2 25 271-295 50-74 (310)
102 1gku_B Reverse gyrase, TOP-RG; 95.7 0.014 4.6E-07 78.1 8.5 69 249-325 57-125 (1054)
103 2chq_A Replication factor C sm 95.7 0.0086 2.9E-07 67.9 5.8 30 269-298 36-65 (319)
104 4a15_A XPD helicase, ATP-depen 95.7 0.019 6.5E-07 72.3 9.4 73 249-324 3-76 (620)
105 3dm5_A SRP54, signal recogniti 95.7 0.011 3.8E-07 71.1 6.8 37 270-306 99-135 (443)
106 2zpa_A Uncharacterized protein 95.7 0.0068 2.3E-07 76.1 5.1 60 249-316 175-234 (671)
107 3t15_A Ribulose bisphosphate c 95.7 0.0057 2E-07 69.7 4.1 33 271-306 36-68 (293)
108 1njg_A DNA polymerase III subu 95.7 0.0077 2.6E-07 64.6 4.9 43 251-296 28-70 (250)
109 2z83_A Helicase/nucleoside tri 95.6 0.0078 2.7E-07 73.0 5.4 50 271-320 21-71 (459)
110 1sxj_A Activator 1 95 kDa subu 95.6 0.0076 2.6E-07 74.2 5.2 71 235-308 26-111 (516)
111 3uk6_A RUVB-like 2; hexameric 95.6 0.01 3.6E-07 69.1 6.2 46 251-296 49-95 (368)
112 2qby_A CDC6 homolog 1, cell di 95.6 0.012 4E-07 68.5 6.4 55 251-305 25-82 (386)
113 2v6i_A RNA helicase; membrane, 95.5 0.01 3.5E-07 71.4 5.6 49 271-319 2-51 (431)
114 2gno_A DNA polymerase III, gam 95.5 0.021 7.3E-07 65.5 7.8 73 270-352 17-94 (305)
115 3dmq_A RNA polymerase-associat 95.5 0.024 8.2E-07 75.1 9.4 69 247-321 151-221 (968)
116 4fcw_A Chaperone protein CLPB; 95.4 0.017 5.6E-07 65.6 6.9 34 272-305 48-81 (311)
117 2vl7_A XPD; helicase, unknown 95.4 0.021 7.3E-07 70.7 8.4 68 248-321 6-73 (540)
118 1sxj_D Activator 1 41 kDa subu 95.4 0.0064 2.2E-07 70.3 3.4 40 253-296 44-83 (353)
119 2w0m_A SSO2452; RECA, SSPF, un 95.4 0.016 5.5E-07 62.4 6.4 49 271-320 23-71 (235)
120 2kjq_A DNAA-related protein; s 95.4 0.013 4.5E-07 59.9 5.2 37 270-306 35-71 (149)
121 3co5_A Putative two-component 95.4 0.0061 2.1E-07 61.7 2.6 22 271-292 27-48 (143)
122 3bh0_A DNAB-like replicative h 95.4 0.017 5.7E-07 66.6 6.6 52 270-322 67-118 (315)
123 3pvs_A Replication-associated 95.4 0.0088 3E-07 72.4 4.4 48 270-320 49-96 (447)
124 2r2a_A Uncharacterized protein 95.3 0.0092 3.1E-07 64.3 3.9 26 271-296 5-30 (199)
125 3b9p_A CG5977-PA, isoform A; A 95.3 0.014 4.9E-07 65.9 5.7 45 251-295 26-78 (297)
126 3kl4_A SRP54, signal recogniti 95.3 0.011 3.8E-07 71.0 4.9 37 270-306 96-132 (433)
127 1yks_A Genome polyprotein [con 95.3 0.012 4.2E-07 70.9 5.2 50 271-320 8-58 (440)
128 2bjv_A PSP operon transcriptio 95.3 0.016 5.4E-07 64.5 5.8 35 271-305 29-63 (265)
129 2jlq_A Serine protease subunit 95.3 0.013 4.5E-07 70.8 5.6 49 271-319 19-68 (451)
130 2r8r_A Sensor protein; KDPD, P 95.1 0.016 5.4E-07 63.5 5.1 35 273-307 8-42 (228)
131 2r44_A Uncharacterized protein 95.0 0.013 4.5E-07 67.4 4.5 36 254-295 35-70 (331)
132 1sxj_B Activator 1 37 kDa subu 95.0 0.016 5.6E-07 65.7 5.1 44 251-298 26-69 (323)
133 1xx6_A Thymidine kinase; NESG, 94.9 0.022 7.5E-07 60.9 5.4 38 271-308 8-45 (191)
134 3hr8_A Protein RECA; alpha and 94.9 0.017 5.8E-07 67.7 4.8 48 271-318 61-108 (356)
135 1hqc_A RUVB; extended AAA-ATPa 94.9 0.023 8E-07 64.8 5.9 45 251-295 17-62 (324)
136 2c9o_A RUVB-like 1; hexameric 94.9 0.024 8.4E-07 68.6 6.3 45 251-295 42-87 (456)
137 3pfi_A Holliday junction ATP-d 94.9 0.021 7.1E-07 65.8 5.4 44 251-294 34-78 (338)
138 1in4_A RUVB, holliday junction 94.8 0.02 6.9E-07 66.3 5.3 43 253-295 32-75 (334)
139 4b4t_M 26S protease regulatory 94.8 0.013 4.3E-07 70.5 3.6 34 271-307 215-248 (434)
140 4b4t_K 26S protease regulatory 94.8 0.013 4.3E-07 70.4 3.6 33 271-306 206-238 (428)
141 2v1x_A ATP-dependent DNA helic 94.8 0.05 1.7E-06 68.1 9.0 66 247-322 42-107 (591)
142 1d2n_A N-ethylmaleimide-sensit 94.7 0.014 4.8E-07 65.2 3.5 26 269-294 62-87 (272)
143 2r62_A Cell division protease 94.7 0.013 4.6E-07 65.1 3.2 23 272-294 45-67 (268)
144 1jr3_A DNA polymerase III subu 94.7 0.02 7E-07 66.5 4.9 43 251-296 21-63 (373)
145 3cf0_A Transitional endoplasmi 94.7 0.016 5.5E-07 66.1 3.7 25 271-295 49-73 (301)
146 3hws_A ATP-dependent CLP prote 94.7 0.022 7.4E-07 66.7 4.9 25 271-295 51-75 (363)
147 2wv9_A Flavivirin protease NS2 94.6 0.012 4.1E-07 74.7 2.9 50 271-320 241-291 (673)
148 4b4t_L 26S protease subunit RP 94.6 0.015 5.2E-07 69.8 3.6 34 271-307 215-248 (437)
149 4b4t_J 26S protease regulatory 94.6 0.015 5.2E-07 69.0 3.5 34 271-307 182-215 (405)
150 3eie_A Vacuolar protein sortin 94.6 0.019 6.5E-07 66.1 4.2 52 251-305 23-82 (322)
151 1vma_A Cell division protein F 94.6 0.026 9E-07 64.8 5.3 37 270-306 103-139 (306)
152 1w5s_A Origin recognition comp 94.6 0.033 1.1E-06 65.6 6.3 46 252-297 28-78 (412)
153 2v3c_C SRP54, signal recogniti 94.6 0.021 7.1E-07 68.7 4.5 37 271-307 99-135 (432)
154 3crv_A XPD/RAD3 related DNA he 94.5 0.057 2E-06 67.0 8.6 68 249-322 3-70 (551)
155 1lv7_A FTSH; alpha/beta domain 94.5 0.022 7.6E-07 63.0 4.3 25 271-295 45-69 (257)
156 1xwi_A SKD1 protein; VPS4B, AA 94.5 0.019 6.4E-07 66.3 3.7 25 271-295 45-69 (322)
157 4a1f_A DNAB helicase, replicat 94.4 0.042 1.4E-06 64.0 6.6 53 270-323 45-97 (338)
158 2zts_A Putative uncharacterize 94.4 0.025 8.7E-07 61.6 4.5 50 271-321 30-80 (251)
159 4f92_B U5 small nuclear ribonu 94.4 0.063 2.2E-06 74.8 9.4 72 248-325 925-998 (1724)
160 2j37_W Signal recognition part 94.4 0.035 1.2E-06 68.0 6.1 45 271-315 101-148 (504)
161 3io5_A Recombination and repai 94.4 0.021 7.2E-07 65.6 3.9 40 272-311 29-70 (333)
162 1cr0_A DNA primase/helicase; R 94.4 0.051 1.7E-06 61.5 7.1 52 270-322 34-86 (296)
163 1nlf_A Regulatory protein REPA 94.4 0.051 1.7E-06 61.1 6.9 50 271-321 30-89 (279)
164 2whx_A Serine protease/ntpase/ 94.3 0.028 9.6E-07 70.7 5.2 50 271-320 186-236 (618)
165 2zr9_A Protein RECA, recombina 94.3 0.027 9.2E-07 65.9 4.7 39 271-309 61-99 (349)
166 2yvu_A Probable adenylyl-sulfa 94.3 0.042 1.4E-06 57.6 5.7 37 269-305 11-47 (186)
167 2px0_A Flagellar biosynthesis 94.3 0.035 1.2E-06 63.4 5.5 37 270-306 104-141 (296)
168 1u94_A RECA protein, recombina 94.3 0.03 1E-06 65.7 4.9 39 271-309 63-101 (356)
169 1u0j_A DNA replication protein 94.2 0.053 1.8E-06 60.9 6.4 55 238-294 72-127 (267)
170 4b4t_I 26S protease regulatory 94.1 0.023 7.9E-07 67.8 3.6 25 271-295 216-240 (437)
171 2r6a_A DNAB helicase, replicat 94.1 0.059 2E-06 65.2 7.3 51 270-321 202-253 (454)
172 1xjc_A MOBB protein homolog; s 94.1 0.047 1.6E-06 57.2 5.5 39 271-309 4-42 (169)
173 3mkq_B Coatomer subunit alpha; 94.1 0.1 3.6E-06 54.9 8.1 80 938-1017 36-125 (177)
174 2x8a_A Nuclear valosin-contain 94.1 0.029 9.8E-07 63.3 4.1 21 274-294 47-67 (274)
175 1oyw_A RECQ helicase, ATP-depe 94.1 0.059 2E-06 66.4 7.2 65 248-322 24-88 (523)
176 3bgw_A DNAB-like replicative h 94.0 0.042 1.4E-06 66.3 5.7 52 270-322 196-247 (444)
177 1zu4_A FTSY; GTPase, signal re 94.0 0.04 1.4E-06 63.6 5.3 36 271-306 105-140 (320)
178 2qp9_X Vacuolar protein sortin 94.0 0.029 9.9E-07 65.6 4.1 25 271-295 84-108 (355)
179 4b4t_H 26S protease regulatory 93.9 0.023 8E-07 68.4 3.1 54 251-307 214-276 (467)
180 1ojl_A Transcriptional regulat 93.9 0.049 1.7E-06 62.3 5.6 47 254-302 10-56 (304)
181 1q57_A DNA primase/helicase; d 93.8 0.046 1.6E-06 67.0 5.6 52 270-322 241-293 (503)
182 1g8p_A Magnesium-chelatase 38 93.8 0.027 9.3E-07 64.9 3.4 25 271-295 45-69 (350)
183 1xp8_A RECA protein, recombina 93.8 0.04 1.4E-06 64.9 4.7 40 271-310 74-113 (366)
184 3nbx_X ATPase RAVA; AAA+ ATPas 93.8 0.041 1.4E-06 67.4 5.0 25 271-295 41-65 (500)
185 2w00_A HSDR, R.ECOR124I; ATP-b 93.8 0.041 1.4E-06 73.0 5.3 73 248-321 270-352 (1038)
186 2xxa_A Signal recognition part 93.8 0.047 1.6E-06 65.7 5.4 44 271-314 100-147 (433)
187 2zan_A Vacuolar protein sortin 93.7 0.045 1.5E-06 66.1 5.1 36 271-308 167-202 (444)
188 1um8_A ATP-dependent CLP prote 93.7 0.031 1.1E-06 65.6 3.7 25 271-295 72-96 (376)
189 1p9r_A General secretion pathw 93.7 0.07 2.4E-06 63.9 6.7 52 249-305 150-201 (418)
190 1ixz_A ATP-dependent metallopr 93.7 0.028 9.7E-07 62.1 3.0 22 274-295 52-73 (254)
191 2cvh_A DNA repair and recombin 93.6 0.049 1.7E-06 58.2 4.8 35 270-307 19-53 (220)
192 3d8b_A Fidgetin-like protein 1 93.6 0.035 1.2E-06 65.0 3.8 26 270-295 116-141 (357)
193 3p32_A Probable GTPase RV1496/ 93.6 0.096 3.3E-06 61.2 7.6 39 269-307 77-115 (355)
194 3pxg_A Negative regulator of g 93.6 0.064 2.2E-06 65.2 6.2 42 252-297 186-227 (468)
195 3a4m_A L-seryl-tRNA(SEC) kinas 93.6 0.06 2.1E-06 60.0 5.5 36 271-306 4-39 (260)
196 2q6t_A DNAB replication FORK h 93.5 0.082 2.8E-06 63.7 7.0 52 270-322 199-251 (444)
197 1qqe_A Vesicular transport pro 93.5 0.081 2.8E-06 59.3 6.4 81 895-991 32-120 (292)
198 3bfv_A CAPA1, CAPB2, membrane 93.4 0.13 4.4E-06 57.8 8.0 52 254-305 65-117 (271)
199 2z0h_A DTMP kinase, thymidylat 93.4 0.066 2.3E-06 56.2 5.2 40 273-312 2-42 (197)
200 1nks_A Adenylate kinase; therm 93.4 0.06 2.1E-06 56.1 4.8 33 273-305 3-35 (194)
201 3kb2_A SPBC2 prophage-derived 93.3 0.045 1.6E-06 56.0 3.7 24 272-295 2-25 (173)
202 1j8m_F SRP54, signal recogniti 93.3 0.086 2.9E-06 60.2 6.3 45 271-315 98-145 (297)
203 3vfd_A Spastin; ATPase, microt 93.2 0.072 2.5E-06 62.9 5.8 54 251-307 120-181 (389)
204 2ehv_A Hypothetical protein PH 93.2 0.067 2.3E-06 58.3 5.1 37 271-307 30-67 (251)
205 1qhx_A CPT, protein (chloramph 93.2 0.044 1.5E-06 56.7 3.4 25 271-295 3-27 (178)
206 1gvn_B Zeta; postsegregational 93.2 0.063 2.2E-06 60.9 4.9 26 270-295 32-57 (287)
207 1c4o_A DNA nucleotide excision 93.2 0.17 5.7E-06 64.3 9.3 73 247-324 6-78 (664)
208 1rz3_A Hypothetical protein rb 93.1 0.14 4.9E-06 54.5 7.4 51 254-305 6-56 (201)
209 2rhm_A Putative kinase; P-loop 93.1 0.051 1.7E-06 56.9 3.8 25 271-295 5-29 (193)
210 1yrb_A ATP(GTP)binding protein 93.1 0.067 2.3E-06 59.0 4.9 35 271-306 14-48 (262)
211 4f92_B U5 small nuclear ribonu 93.0 0.15 5.1E-06 71.2 9.1 71 248-324 78-159 (1724)
212 1kht_A Adenylate kinase; phosp 93.0 0.058 2E-06 56.2 4.0 29 271-299 3-31 (192)
213 1iy2_A ATP-dependent metallopr 93.0 0.042 1.4E-06 61.7 3.0 22 274-295 76-97 (278)
214 2z43_A DNA repair and recombin 92.9 0.076 2.6E-06 61.3 5.1 39 271-309 107-151 (324)
215 1ly1_A Polynucleotide kinase; 92.9 0.051 1.7E-06 56.1 3.3 22 272-293 3-24 (181)
216 3trf_A Shikimate kinase, SK; a 92.8 0.064 2.2E-06 55.9 4.0 25 271-295 5-29 (185)
217 2vhj_A Ntpase P4, P4; non- hyd 92.8 0.037 1.3E-06 63.7 2.3 24 271-294 123-146 (331)
218 2plr_A DTMP kinase, probable t 92.8 0.11 3.9E-06 54.9 6.0 32 271-303 4-35 (213)
219 3iij_A Coilin-interacting nucl 92.8 0.065 2.2E-06 55.8 4.0 25 271-295 11-35 (180)
220 3lw7_A Adenylate kinase relate 92.8 0.049 1.7E-06 55.5 3.0 20 272-291 2-21 (179)
221 1g5t_A COB(I)alamin adenosyltr 92.8 0.096 3.3E-06 56.1 5.3 40 270-309 27-66 (196)
222 2j9r_A Thymidine kinase; TK1, 92.8 0.1 3.5E-06 56.6 5.6 39 271-309 28-66 (214)
223 3e70_C DPA, signal recognition 92.8 0.086 3E-06 61.1 5.3 37 270-306 128-164 (328)
224 1zp6_A Hypothetical protein AT 92.7 0.053 1.8E-06 56.8 3.1 23 271-293 9-31 (191)
225 1n0w_A DNA repair protein RAD5 92.7 0.11 3.6E-06 56.5 5.7 39 271-309 24-68 (243)
226 2pbr_A DTMP kinase, thymidylat 92.6 0.1 3.5E-06 54.5 5.3 33 273-305 2-34 (195)
227 3rc3_A ATP-dependent RNA helic 92.6 0.082 2.8E-06 67.1 5.3 48 271-322 155-202 (677)
228 1rj9_A FTSY, signal recognitio 92.6 0.11 3.6E-06 59.7 5.7 38 270-307 101-138 (304)
229 1nn5_A Similar to deoxythymidy 92.6 0.11 3.9E-06 55.2 5.6 34 271-304 9-42 (215)
230 3cio_A ETK, tyrosine-protein k 92.6 0.18 6.1E-06 57.6 7.6 50 257-306 90-140 (299)
231 1kag_A SKI, shikimate kinase I 92.5 0.063 2.2E-06 55.3 3.5 24 271-294 4-27 (173)
232 3hu3_A Transitional endoplasmi 92.5 0.084 2.9E-06 64.5 5.0 44 251-294 209-261 (489)
233 3o8b_A HCV NS3 protease/helica 92.5 0.12 4.1E-06 65.2 6.4 50 271-323 232-281 (666)
234 1zuh_A Shikimate kinase; alpha 92.5 0.074 2.5E-06 54.6 3.8 27 269-295 5-31 (168)
235 3la6_A Tyrosine-protein kinase 92.4 0.18 6.2E-06 57.2 7.3 54 253-306 74-128 (286)
236 1np6_A Molybdopterin-guanine d 92.3 0.12 4.2E-06 54.2 5.4 36 271-306 6-41 (174)
237 3vaa_A Shikimate kinase, SK; s 92.3 0.084 2.9E-06 56.1 4.1 25 271-295 25-49 (199)
238 2p5t_B PEZT; postsegregational 92.2 0.08 2.7E-06 58.7 4.0 26 269-294 30-55 (253)
239 4edh_A DTMP kinase, thymidylat 92.2 0.2 6.8E-06 54.3 7.0 43 271-313 6-49 (213)
240 2c95_A Adenylate kinase 1; tra 92.2 0.085 2.9E-06 55.3 4.0 25 271-295 9-33 (196)
241 3b9q_A Chloroplast SRP recepto 92.2 0.12 4.1E-06 59.2 5.5 37 270-306 99-135 (302)
242 1knq_A Gluconate kinase; ALFA/ 92.2 0.087 3E-06 54.5 3.9 24 271-294 8-31 (175)
243 4eun_A Thermoresistant glucoki 92.1 0.09 3.1E-06 55.9 4.1 26 270-295 28-53 (200)
244 1v5w_A DMC1, meiotic recombina 92.1 0.1 3.5E-06 60.7 5.0 49 271-319 122-177 (343)
245 3pxi_A Negative regulator of g 92.1 0.12 4.1E-06 66.6 6.0 42 252-297 186-227 (758)
246 1g41_A Heat shock protein HSLU 92.1 0.07 2.4E-06 64.2 3.6 25 271-295 50-74 (444)
247 2ifu_A Gamma-SNAP; membrane fu 92.0 0.2 6.8E-06 56.5 7.1 99 893-1008 29-142 (307)
248 3pxi_A Negative regulator of g 92.0 0.17 5.7E-06 65.2 7.2 33 273-305 523-555 (758)
249 1tev_A UMP-CMP kinase; ploop, 92.0 0.084 2.9E-06 55.1 3.6 25 271-295 3-27 (196)
250 3t61_A Gluconokinase; PSI-biol 92.0 0.1 3.4E-06 55.5 4.2 25 271-295 18-42 (202)
251 2cdn_A Adenylate kinase; phosp 91.9 0.1 3.6E-06 55.3 4.3 24 272-295 21-44 (201)
252 2ce7_A Cell division protein F 91.8 0.09 3.1E-06 64.0 4.0 24 272-295 50-73 (476)
253 3ug7_A Arsenical pump-driving 91.8 0.12 4.2E-06 60.2 5.1 39 270-308 25-63 (349)
254 1qvr_A CLPB protein; coiled co 91.8 0.18 6.1E-06 65.9 7.1 51 253-307 177-234 (854)
255 2iyv_A Shikimate kinase, SK; t 91.7 0.099 3.4E-06 54.5 3.8 24 272-295 3-26 (184)
256 4ag6_A VIRB4 ATPase, type IV s 91.7 0.14 4.8E-06 60.4 5.6 41 271-311 35-75 (392)
257 1w4r_A Thymidine kinase; type 91.7 0.14 4.8E-06 54.8 4.9 38 271-308 20-57 (195)
258 3cm0_A Adenylate kinase; ATP-b 91.7 0.086 2.9E-06 54.9 3.2 25 271-295 4-28 (186)
259 3jvv_A Twitching mobility prot 91.6 0.13 4.3E-06 60.4 4.9 35 270-304 122-157 (356)
260 2ifu_A Gamma-SNAP; membrane fu 91.6 0.13 4.5E-06 58.0 5.0 76 893-971 49-131 (307)
261 2ze6_A Isopentenyl transferase 91.6 0.096 3.3E-06 58.2 3.7 23 273-295 3-25 (253)
262 3lv8_A DTMP kinase, thymidylat 91.5 0.27 9.4E-06 54.2 7.3 43 271-313 27-71 (236)
263 1via_A Shikimate kinase; struc 91.5 0.1 3.4E-06 54.1 3.6 23 273-295 6-28 (175)
264 3m6a_A ATP-dependent protease 91.5 0.098 3.3E-06 64.8 4.1 26 270-295 107-132 (543)
265 2qen_A Walker-type ATPase; unk 91.5 0.17 5.9E-06 57.7 5.9 37 252-294 18-54 (350)
266 3uie_A Adenylyl-sulfate kinase 91.5 0.11 3.8E-06 55.2 3.9 27 270-296 24-50 (200)
267 1aky_A Adenylate kinase; ATP:A 91.5 0.12 4E-06 55.8 4.1 25 271-295 4-28 (220)
268 1qf9_A UMP/CMP kinase, protein 91.4 0.11 3.8E-06 54.0 3.9 25 271-295 6-30 (194)
269 2wwf_A Thymidilate kinase, put 91.4 0.18 6.1E-06 53.6 5.5 32 271-302 10-41 (212)
270 2og2_A Putative signal recogni 91.4 0.16 5.4E-06 59.6 5.4 46 270-315 156-204 (359)
271 3tau_A Guanylate kinase, GMP k 91.4 0.11 3.9E-06 55.6 3.9 25 270-294 7-31 (208)
272 2bwj_A Adenylate kinase 5; pho 91.3 0.11 3.9E-06 54.5 3.8 25 271-295 12-36 (199)
273 3v9p_A DTMP kinase, thymidylat 91.3 0.25 8.4E-06 54.2 6.5 44 271-314 25-73 (227)
274 4tmk_A Protein (thymidylate ki 91.2 0.34 1.2E-05 52.5 7.4 50 271-320 3-54 (213)
275 2pez_A Bifunctional 3'-phospho 91.1 0.19 6.6E-06 52.1 5.3 33 271-303 5-37 (179)
276 3fb4_A Adenylate kinase; psych 91.1 0.12 4.1E-06 55.4 3.7 22 274-295 3-24 (216)
277 1ye8_A Protein THEP1, hypothet 91.1 0.12 4.2E-06 54.3 3.7 23 273-295 2-24 (178)
278 2vli_A Antibiotic resistance p 91.1 0.085 2.9E-06 54.7 2.5 24 271-294 5-28 (183)
279 2jaq_A Deoxyguanosine kinase; 91.1 0.12 4.2E-06 54.3 3.7 23 273-295 2-24 (205)
280 1b89_A Protein (clathrin heavy 91.0 0.15 5.3E-06 61.1 4.9 44 972-1015 152-198 (449)
281 1qvr_A CLPB protein; coiled co 91.0 0.22 7.5E-06 65.1 6.8 34 272-305 589-622 (854)
282 2fna_A Conserved hypothetical 90.9 0.16 5.6E-06 58.0 5.0 36 252-295 19-54 (357)
283 2bbw_A Adenylate kinase 4, AK4 90.9 0.14 4.8E-06 56.3 4.1 25 271-295 27-51 (246)
284 2ewv_A Twitching motility prot 90.9 0.16 5.5E-06 59.8 4.9 36 270-305 135-171 (372)
285 1ls1_A Signal recognition part 90.9 0.18 6.3E-06 57.4 5.2 36 271-306 98-133 (295)
286 3cmu_A Protein RECA, recombina 90.9 0.17 5.8E-06 70.6 5.7 41 270-310 1426-1466(2050)
287 2j41_A Guanylate kinase; GMP, 90.9 0.13 4.5E-06 54.3 3.8 23 271-293 6-28 (207)
288 1e6c_A Shikimate kinase; phosp 90.8 0.13 4.4E-06 52.8 3.6 24 272-295 3-26 (173)
289 1y63_A LMAJ004144AAA protein; 90.8 0.14 4.8E-06 53.7 3.9 24 271-294 10-33 (184)
290 1ukz_A Uridylate kinase; trans 90.8 0.12 4.1E-06 54.7 3.4 24 271-294 15-38 (203)
291 2l8b_A Protein TRAI, DNA helic 90.8 0.41 1.4E-05 50.6 7.2 62 250-316 35-97 (189)
292 2qor_A Guanylate kinase; phosp 90.8 0.11 3.9E-06 55.3 3.2 25 271-295 12-36 (204)
293 2qm8_A GTPase/ATPase; G protei 90.8 0.19 6.4E-06 58.4 5.2 37 270-306 54-90 (337)
294 3k1j_A LON protease, ATP-depen 90.8 0.15 5.2E-06 63.9 4.8 25 271-295 60-84 (604)
295 4eaq_A DTMP kinase, thymidylat 90.7 0.28 9.6E-06 53.6 6.4 39 271-310 26-65 (229)
296 1zak_A Adenylate kinase; ATP:A 90.7 0.14 4.8E-06 55.2 3.9 25 271-295 5-29 (222)
297 1r6b_X CLPA protein; AAA+, N-t 90.7 0.21 7.1E-06 64.3 6.1 42 252-297 192-233 (758)
298 2ffh_A Protein (FFH); SRP54, s 90.7 0.17 5.8E-06 60.7 4.9 36 271-306 98-133 (425)
299 3umf_A Adenylate kinase; rossm 90.7 0.14 4.9E-06 55.7 3.9 26 270-295 28-53 (217)
300 2i1q_A DNA repair and recombin 90.7 0.15 5.1E-06 58.6 4.2 49 271-319 98-163 (322)
301 2bdt_A BH3686; alpha-beta prot 90.7 0.12 4.2E-06 54.1 3.2 22 272-293 3-24 (189)
302 3dl0_A Adenylate kinase; phosp 90.7 0.11 3.9E-06 55.6 3.0 21 274-294 3-23 (216)
303 3tr0_A Guanylate kinase, GMP k 90.7 0.14 4.8E-06 54.1 3.7 24 271-294 7-30 (205)
304 2www_A Methylmalonic aciduria 90.6 0.2 6.9E-06 58.4 5.4 37 271-307 74-110 (349)
305 1m7g_A Adenylylsulfate kinase; 90.6 0.21 7.1E-06 53.5 5.0 37 270-306 24-61 (211)
306 1gtv_A TMK, thymidylate kinase 90.6 0.076 2.6E-06 56.6 1.6 33 273-305 2-34 (214)
307 2wsm_A Hydrogenase expression/ 90.6 0.22 7.7E-06 53.2 5.3 36 270-306 29-64 (221)
308 2yhs_A FTSY, cell division pro 90.6 0.21 7.1E-06 60.8 5.5 46 270-315 292-340 (503)
309 2oap_1 GSPE-2, type II secreti 90.6 0.18 6.1E-06 61.9 5.0 48 250-304 245-292 (511)
310 2eyu_A Twitching motility prot 90.5 0.2 6.8E-06 56.1 5.0 36 270-305 24-60 (261)
311 1ihu_A Arsenical pump-driving 90.5 0.22 7.4E-06 62.2 5.9 39 270-308 7-45 (589)
312 1ak2_A Adenylate kinase isoenz 90.5 0.17 5.7E-06 55.2 4.3 25 271-295 16-40 (233)
313 2d7d_A Uvrabc system protein B 90.5 0.65 2.2E-05 58.8 10.2 77 243-324 6-82 (661)
314 3zq6_A Putative arsenical pump 90.5 0.2 6.9E-06 57.7 5.1 37 272-308 15-51 (324)
315 2dhr_A FTSH; AAA+ protein, hex 90.5 0.11 3.8E-06 63.6 3.0 23 273-295 66-88 (499)
316 1e9r_A Conjugal transfer prote 90.4 0.2 6.8E-06 60.0 5.2 42 271-312 53-94 (437)
317 3be4_A Adenylate kinase; malar 90.2 0.15 5.1E-06 55.0 3.5 25 271-295 5-29 (217)
318 1zd8_A GTP:AMP phosphotransfer 90.2 0.13 4.5E-06 55.7 3.1 24 271-294 7-30 (227)
319 3ld9_A DTMP kinase, thymidylat 90.1 0.36 1.2E-05 52.8 6.5 46 270-315 20-68 (223)
320 1svm_A Large T antigen; AAA+ f 90.1 0.18 6E-06 59.6 4.3 25 270-294 168-192 (377)
321 3c8u_A Fructokinase; YP_612366 90.1 0.17 6E-06 54.1 3.9 28 269-296 20-47 (208)
322 2p67_A LAO/AO transport system 90.0 0.23 7.8E-06 57.7 5.1 38 269-306 54-91 (341)
323 3tlx_A Adenylate kinase 2; str 90.0 0.18 6E-06 55.6 3.9 25 271-295 29-53 (243)
324 2pt5_A Shikimate kinase, SK; a 90.0 0.18 6.2E-06 51.5 3.7 23 273-295 2-24 (168)
325 2xb4_A Adenylate kinase; ATP-b 89.9 0.17 5.8E-06 54.9 3.7 23 273-295 2-24 (223)
326 2v54_A DTMP kinase, thymidylat 89.9 0.14 4.9E-06 54.0 3.0 25 271-295 4-28 (204)
327 1kgd_A CASK, peripheral plasma 89.8 0.19 6.4E-06 52.6 3.8 24 271-294 5-28 (180)
328 1tf7_A KAIC; homohexamer, hexa 89.8 0.31 1.1E-05 60.0 6.3 41 270-310 280-320 (525)
329 3cf2_A TER ATPase, transitiona 89.8 0.12 4.1E-06 66.5 2.7 33 271-306 238-270 (806)
330 1qqe_A Vesicular transport pro 89.8 0.32 1.1E-05 54.4 5.9 78 892-971 49-134 (292)
331 3cpe_A Terminase, DNA packagin 89.7 0.89 3E-05 56.8 10.4 72 247-325 161-234 (592)
332 3iqw_A Tail-anchored protein t 89.5 0.29 1E-05 56.8 5.4 38 271-308 16-53 (334)
333 3mkq_A Coatomer beta'-subunit; 89.5 0.35 1.2E-05 61.5 6.7 76 936-1011 694-779 (814)
334 1c9k_A COBU, adenosylcobinamid 89.5 0.17 5.8E-06 53.6 3.1 49 273-325 1-49 (180)
335 4a74_A DNA repair and recombin 89.4 0.15 5.3E-06 54.6 2.8 26 271-296 25-50 (231)
336 3e2i_A Thymidine kinase; Zn-bi 89.4 0.3 1E-05 53.1 4.9 40 270-309 27-66 (219)
337 1e4v_A Adenylate kinase; trans 89.2 0.19 6.6E-06 53.9 3.4 22 274-295 3-24 (214)
338 3sr0_A Adenylate kinase; phosp 89.1 0.22 7.5E-06 53.7 3.7 22 273-294 2-23 (206)
339 3end_A Light-independent proto 89.1 0.32 1.1E-05 55.2 5.3 35 271-305 41-75 (307)
340 1cke_A CK, MSSA, protein (cyti 89.0 0.24 8.1E-06 53.3 3.9 24 271-294 5-28 (227)
341 3io3_A DEHA2D07832P; chaperone 88.9 0.32 1.1E-05 56.7 5.2 39 270-308 17-57 (348)
342 2woo_A ATPase GET3; tail-ancho 88.8 0.37 1.3E-05 55.6 5.7 37 271-307 19-55 (329)
343 1r6b_X CLPA protein; AAA+, N-t 88.8 0.35 1.2E-05 62.2 5.9 24 272-295 489-512 (758)
344 1xi4_A Clathrin heavy chain; a 88.8 0.26 9.1E-06 66.2 4.8 135 884-1020 1199-1381(1630)
345 4gp7_A Metallophosphoesterase; 88.8 0.16 5.3E-06 52.8 2.2 20 271-290 9-28 (171)
346 2hf9_A Probable hydrogenase ni 88.7 0.47 1.6E-05 50.8 6.0 33 271-304 38-70 (226)
347 3lda_A DNA repair protein RAD5 88.6 0.38 1.3E-05 57.2 5.6 39 270-308 177-221 (400)
348 1jjv_A Dephospho-COA kinase; P 88.5 0.22 7.6E-06 52.9 3.2 21 273-293 4-24 (206)
349 3a00_A Guanylate kinase, GMP k 88.3 0.24 8.1E-06 52.0 3.3 24 272-295 2-25 (186)
350 1f2t_A RAD50 ABC-ATPase; DNA d 88.2 0.29 9.8E-06 49.9 3.7 27 271-297 23-49 (149)
351 2qt1_A Nicotinamide riboside k 88.2 0.26 8.9E-06 52.4 3.5 22 271-292 21-42 (207)
352 1xi4_A Clathrin heavy chain; a 88.2 0.65 2.2E-05 62.6 7.8 34 938-971 1064-1098(1630)
353 3kjh_A CO dehydrogenase/acetyl 88.1 0.25 8.6E-06 53.6 3.4 33 273-306 3-35 (254)
354 2o0j_A Terminase, DNA packagin 87.9 1.7 5.8E-05 51.3 10.6 72 247-325 161-234 (385)
355 2orv_A Thymidine kinase; TP4A 87.8 0.42 1.4E-05 52.5 4.8 39 271-309 19-57 (234)
356 2ga8_A Hypothetical 39.9 kDa p 87.7 0.49 1.7E-05 55.2 5.7 26 270-295 23-48 (359)
357 3cmw_A Protein RECA, recombina 87.6 0.36 1.2E-05 66.7 5.1 42 270-311 382-423 (1706)
358 3cmw_A Protein RECA, recombina 87.5 0.35 1.2E-05 66.8 4.8 41 270-310 731-771 (1706)
359 3f9v_A Minichromosome maintena 87.4 0.17 5.8E-06 63.3 1.7 19 273-291 329-347 (595)
360 1cp2_A CP2, nitrogenase iron p 87.4 0.43 1.5E-05 52.8 4.9 32 274-305 4-35 (269)
361 3asz_A Uridine kinase; cytidin 87.3 0.32 1.1E-05 51.7 3.6 25 271-295 6-30 (211)
362 2v9p_A Replication protein E1; 87.3 0.39 1.3E-05 54.9 4.5 32 270-304 125-156 (305)
363 1ex7_A Guanylate kinase; subst 87.3 0.34 1.1E-05 51.5 3.7 22 272-293 2-23 (186)
364 1lvg_A Guanylate kinase, GMP k 87.3 0.33 1.1E-05 51.6 3.7 25 271-295 4-28 (198)
365 3ake_A Cytidylate kinase; CMP 87.2 0.38 1.3E-05 50.8 4.0 24 272-295 3-26 (208)
366 3k9g_A PF-32 protein; ssgcid, 87.2 0.4 1.4E-05 53.1 4.4 41 271-312 27-70 (267)
367 3hjn_A DTMP kinase, thymidylat 87.1 0.87 3E-05 48.6 6.8 46 273-318 2-48 (197)
368 2afh_E Nitrogenase iron protei 87.1 0.48 1.7E-05 53.2 5.1 33 273-305 4-36 (289)
369 3cf2_A TER ATPase, transitiona 87.1 0.2 6.9E-06 64.5 2.1 23 272-294 512-534 (806)
370 1hyq_A MIND, cell division inh 86.9 0.54 1.8E-05 51.8 5.3 35 272-306 4-38 (263)
371 1ypw_A Transitional endoplasmi 86.9 0.21 7.2E-06 64.8 2.2 25 271-295 511-535 (806)
372 2i3b_A HCR-ntpase, human cance 86.8 0.38 1.3E-05 51.1 3.8 25 272-296 2-26 (189)
373 3r20_A Cytidylate kinase; stru 86.7 0.4 1.4E-05 52.7 4.0 25 271-295 9-33 (233)
374 1sq5_A Pantothenate kinase; P- 86.6 0.71 2.4E-05 52.7 6.2 36 270-305 79-116 (308)
375 2if2_A Dephospho-COA kinase; a 86.6 0.31 1.1E-05 51.5 3.0 21 273-293 3-23 (204)
376 1uj2_A Uridine-cytidine kinase 86.6 0.33 1.1E-05 53.6 3.3 23 271-293 22-44 (252)
377 2woj_A ATPase GET3; tail-ancho 86.6 0.55 1.9E-05 54.8 5.3 38 271-308 18-57 (354)
378 2oze_A ORF delta'; para, walke 86.6 0.78 2.7E-05 51.6 6.5 38 272-309 35-77 (298)
379 1ypw_A Transitional endoplasmi 86.6 0.26 9E-06 63.9 2.8 25 270-294 237-261 (806)
380 3q9l_A Septum site-determining 86.5 0.52 1.8E-05 51.6 4.9 33 273-305 5-37 (260)
381 2ph1_A Nucleotide-binding prot 86.5 0.52 1.8E-05 52.2 4.9 35 272-306 20-54 (262)
382 2grj_A Dephospho-COA kinase; T 86.5 0.36 1.2E-05 51.4 3.4 27 268-294 9-35 (192)
383 3kta_A Chromosome segregation 86.4 0.37 1.3E-05 49.9 3.4 26 271-296 26-51 (182)
384 4dzz_A Plasmid partitioning pr 86.4 0.47 1.6E-05 49.9 4.3 34 274-307 4-38 (206)
385 1ltq_A Polynucleotide kinase; 86.3 0.34 1.2E-05 54.6 3.3 22 272-293 3-24 (301)
386 3qks_A DNA double-strand break 86.3 0.41 1.4E-05 51.3 3.7 27 271-297 23-49 (203)
387 1g3q_A MIND ATPase, cell divis 86.2 0.56 1.9E-05 50.6 4.9 34 273-306 5-38 (237)
388 1byi_A Dethiobiotin synthase; 86.1 0.7 2.4E-05 49.5 5.5 34 273-306 4-37 (224)
389 1uf9_A TT1252 protein; P-loop, 86.0 0.39 1.3E-05 50.5 3.4 24 270-293 7-30 (203)
390 3b85_A Phosphate starvation-in 86.0 0.68 2.3E-05 49.9 5.3 37 250-293 8-44 (208)
391 3lnc_A Guanylate kinase, GMP k 85.9 0.3 1E-05 52.9 2.5 22 271-292 27-48 (231)
392 3bs4_A Uncharacterized protein 85.9 0.53 1.8E-05 52.6 4.5 50 271-321 21-70 (260)
393 3ney_A 55 kDa erythrocyte memb 85.6 0.5 1.7E-05 50.6 3.9 24 271-294 19-42 (197)
394 3cmu_A Protein RECA, recombina 85.5 0.5 1.7E-05 66.1 4.8 40 270-309 382-421 (2050)
395 1pzn_A RAD51, DNA repair and r 85.5 0.36 1.2E-05 56.3 3.0 25 271-295 131-155 (349)
396 2qmh_A HPR kinase/phosphorylas 85.3 0.43 1.5E-05 51.3 3.2 25 271-295 34-58 (205)
397 3tqc_A Pantothenate kinase; bi 85.1 0.81 2.8E-05 52.7 5.6 24 272-295 93-116 (321)
398 3crm_A TRNA delta(2)-isopenten 85.1 0.38 1.3E-05 55.4 2.9 24 272-295 6-29 (323)
399 3cwq_A Para family chromosome 85.1 0.73 2.5E-05 49.4 5.0 32 273-305 3-34 (209)
400 4hlc_A DTMP kinase, thymidylat 84.8 1.1 3.9E-05 48.0 6.4 44 272-316 3-47 (205)
401 3tmk_A Thymidylate kinase; pho 84.8 1.2 4E-05 48.4 6.4 42 271-314 5-47 (216)
402 3zvl_A Bifunctional polynucleo 84.8 0.36 1.2E-05 57.7 2.6 25 270-294 257-281 (416)
403 1z6g_A Guanylate kinase; struc 84.8 0.49 1.7E-05 51.1 3.5 25 271-295 23-47 (218)
404 3ea0_A ATPase, para family; al 84.7 0.71 2.4E-05 50.0 4.8 35 272-306 5-41 (245)
405 1odf_A YGR205W, hypothetical 3 84.7 0.55 1.9E-05 53.3 4.0 28 269-296 29-56 (290)
406 1znw_A Guanylate kinase, GMP k 84.5 0.55 1.9E-05 50.1 3.7 25 271-295 20-44 (207)
407 1s96_A Guanylate kinase, GMP k 84.3 0.55 1.9E-05 51.0 3.6 25 270-294 15-39 (219)
408 1tf7_A KAIC; homohexamer, hexa 84.3 0.76 2.6E-05 56.5 5.2 38 271-308 39-77 (525)
409 2jeo_A Uridine-cytidine kinase 84.2 0.59 2E-05 51.2 3.9 25 271-295 25-49 (245)
410 3igf_A ALL4481 protein; two-do 84.0 0.49 1.7E-05 55.7 3.3 36 272-307 3-38 (374)
411 4e22_A Cytidylate kinase; P-lo 84.0 0.58 2E-05 51.7 3.7 25 271-295 27-51 (252)
412 1htw_A HI0065; nucleotide-bind 84.0 0.58 2E-05 48.2 3.4 32 271-303 33-64 (158)
413 3nwj_A ATSK2; P loop, shikimat 83.8 0.64 2.2E-05 51.6 3.9 25 271-295 48-72 (250)
414 3aez_A Pantothenate kinase; tr 83.8 0.61 2.1E-05 53.5 3.9 27 269-295 88-114 (312)
415 1q3t_A Cytidylate kinase; nucl 83.7 0.73 2.5E-05 50.2 4.3 26 270-295 15-40 (236)
416 1vht_A Dephospho-COA kinase; s 83.3 0.56 1.9E-05 50.2 3.1 22 271-292 4-25 (218)
417 2f6r_A COA synthase, bifunctio 82.8 0.61 2.1E-05 52.5 3.3 22 271-292 75-96 (281)
418 4akg_A Glutathione S-transfera 82.6 0.87 3E-05 65.8 5.4 24 271-294 1267-1290(2695)
419 3fkq_A NTRC-like two-domain pr 82.5 0.85 2.9E-05 53.5 4.5 36 272-307 144-180 (373)
420 1nij_A Hypothetical protein YJ 82.5 0.61 2.1E-05 53.5 3.2 37 271-309 4-40 (318)
421 1wcv_1 SOJ, segregation protei 82.4 0.68 2.3E-05 51.1 3.4 36 271-306 6-42 (257)
422 2pt7_A CAG-ALFA; ATPase, prote 82.0 0.79 2.7E-05 53.0 3.9 34 271-304 171-204 (330)
423 1z6t_A APAF-1, apoptotic prote 81.9 1.1 3.6E-05 55.6 5.3 40 252-293 130-169 (591)
424 1a7j_A Phosphoribulokinase; tr 81.9 0.84 2.9E-05 51.7 4.0 32 271-302 5-36 (290)
425 1w36_C RECC, exodeoxyribonucle 81.7 0.34 1.2E-05 65.1 0.8 77 772-849 656-757 (1122)
426 3foz_A TRNA delta(2)-isopenten 81.3 0.76 2.6E-05 52.7 3.3 25 271-295 10-34 (316)
427 3tqf_A HPR(Ser) kinase; transf 81.1 0.98 3.4E-05 47.4 3.8 23 271-293 16-38 (181)
428 1x6v_B Bifunctional 3'-phospho 81.0 1.3 4.6E-05 55.4 5.7 36 270-305 51-86 (630)
429 2xj4_A MIPZ; replication, cell 81.0 1 3.5E-05 50.6 4.3 33 273-305 7-39 (286)
430 3pg5_A Uncharacterized protein 81.0 0.66 2.2E-05 54.2 2.8 33 273-305 4-36 (361)
431 2h92_A Cytidylate kinase; ross 81.0 0.82 2.8E-05 48.8 3.3 23 271-293 3-25 (219)
432 2ocp_A DGK, deoxyguanosine kin 80.9 0.71 2.4E-05 50.4 2.8 25 271-295 2-26 (241)
433 3exa_A TRNA delta(2)-isopenten 80.8 0.68 2.3E-05 53.1 2.7 25 271-295 3-27 (322)
434 2gza_A Type IV secretion syste 80.8 0.88 3E-05 53.2 3.8 25 271-295 175-199 (361)
435 3d3q_A TRNA delta(2)-isopenten 80.7 0.79 2.7E-05 53.2 3.2 24 272-295 8-31 (340)
436 3mkq_B Coatomer subunit alpha; 80.5 1.8 6.3E-05 45.4 5.7 99 895-1013 49-147 (177)
437 3a8t_A Adenylate isopentenyltr 80.5 0.6 2.1E-05 54.1 2.2 25 271-295 40-64 (339)
438 1nrj_B SR-beta, signal recogni 80.4 1 3.4E-05 47.8 3.8 24 270-293 11-34 (218)
439 3qkt_A DNA double-strand break 80.1 0.95 3.3E-05 52.3 3.7 27 271-297 23-49 (339)
440 3fwy_A Light-independent proto 79.8 1.6 5.3E-05 50.2 5.3 36 271-306 48-83 (314)
441 1ihu_A Arsenical pump-driving 79.7 1.5 5.1E-05 54.6 5.5 37 271-307 327-363 (589)
442 3ez2_A Plasmid partition prote 79.6 1.1 3.7E-05 52.9 4.1 59 248-306 82-150 (398)
443 1tq4_A IIGP1, interferon-induc 79.2 1.2 4.2E-05 53.0 4.3 23 271-293 69-91 (413)
444 3ice_A Transcription terminati 79.2 1.9 6.5E-05 50.9 5.7 41 254-298 161-201 (422)
445 3qf7_A RAD50; ABC-ATPase, ATPa 79.0 1.2 4E-05 52.3 4.0 30 271-300 23-52 (365)
446 3ulq_A Response regulator aspa 78.9 5.1 0.00017 45.9 9.4 162 889-1061 112-302 (383)
447 2axn_A 6-phosphofructo-2-kinas 78.8 1.6 5.5E-05 53.6 5.3 35 271-305 35-69 (520)
448 3gmt_A Adenylate kinase; ssgci 78.7 1.2 4.2E-05 48.7 3.8 24 272-295 9-32 (230)
449 2a5y_B CED-4; apoptosis; HET: 78.6 2.6 9E-05 51.9 7.3 71 252-323 134-211 (549)
450 3eph_A TRNA isopentenyltransfe 78.6 1.1 3.7E-05 53.2 3.5 25 271-295 2-26 (409)
451 1sky_E F1-ATPase, F1-ATP synth 78.1 1.7 5.7E-05 52.6 5.0 50 271-320 151-203 (473)
452 3u4q_B ATP-dependent helicase/ 77.8 1.3 4.5E-05 59.8 4.5 51 272-323 2-55 (1166)
453 2f1r_A Molybdopterin-guanine d 77.8 1 3.6E-05 46.9 2.8 29 272-300 3-31 (171)
454 2dyk_A GTP-binding protein; GT 77.3 1.2 4.1E-05 44.2 3.0 20 273-292 3-22 (161)
455 2gks_A Bifunctional SAT/APS ki 77.1 2.5 8.6E-05 52.2 6.4 36 271-306 372-407 (546)
456 1p5z_B DCK, deoxycytidine kina 76.8 0.53 1.8E-05 52.2 0.2 25 271-295 24-48 (263)
457 1kao_A RAP2A; GTP-binding prot 76.7 1.3 4.4E-05 44.1 3.0 21 273-293 5-25 (167)
458 2cbz_A Multidrug resistance-as 76.7 1.4 4.8E-05 48.4 3.5 22 271-292 31-52 (237)
459 1m8p_A Sulfate adenylyltransfe 76.7 2.7 9.4E-05 52.2 6.6 37 269-305 394-431 (573)
460 2f9l_A RAB11B, member RAS onco 76.6 1.3 4.3E-05 46.5 3.1 21 273-293 7-27 (199)
461 2obl_A ESCN; ATPase, hydrolase 76.5 1.7 5.8E-05 50.6 4.4 49 256-308 60-108 (347)
462 1z2a_A RAS-related protein RAB 76.4 1.3 4.5E-05 44.2 3.1 20 273-292 7-26 (168)
463 2onk_A Molybdate/tungstate ABC 76.3 1.5 5E-05 48.4 3.6 21 272-292 25-45 (240)
464 2pcj_A ABC transporter, lipopr 76.0 1.3 4.3E-05 48.2 3.0 22 271-292 30-51 (224)
465 3ez9_A Para; DNA binding, wing 75.9 1 3.5E-05 53.2 2.4 58 248-305 85-152 (403)
466 2wji_A Ferrous iron transport 75.8 1.4 4.8E-05 44.6 3.1 21 272-292 4-24 (165)
467 3l0o_A Transcription terminati 75.5 2.9 9.8E-05 49.4 5.8 30 269-298 173-202 (427)
468 2ged_A SR-beta, signal recogni 75.4 1.7 5.9E-05 44.8 3.7 23 271-293 48-70 (193)
469 2lkc_A Translation initiation 75.3 1.9 6.4E-05 43.7 3.9 23 270-292 7-29 (178)
470 1oix_A RAS-related protein RAB 75.2 1.4 4.7E-05 46.1 2.9 21 273-293 31-51 (191)
471 1ek0_A Protein (GTP-binding pr 75.1 1.5 5.2E-05 43.8 3.1 19 274-292 6-24 (170)
472 2ce2_X GTPase HRAS; signaling 75.1 1.4 4.9E-05 43.6 2.9 20 274-293 6-25 (166)
473 1g16_A RAS-related protein SEC 75.0 1.4 4.9E-05 44.0 2.9 19 274-292 6-24 (170)
474 1wms_A RAB-9, RAB9, RAS-relate 74.9 1.5 5.2E-05 44.4 3.0 20 273-292 9-28 (177)
475 1sgw_A Putative ABC transporte 74.9 1.4 4.9E-05 47.6 3.0 22 271-292 35-56 (214)
476 3tif_A Uncharacterized ABC tra 74.9 1.7 5.7E-05 47.7 3.5 22 271-292 31-52 (235)
477 2d2e_A SUFC protein; ABC-ATPas 74.8 1.6 5.4E-05 48.3 3.3 23 271-293 29-51 (250)
478 1ky3_A GTP-binding protein YPT 74.7 1.5 5.2E-05 44.4 3.0 21 272-292 9-29 (182)
479 1b89_A Protein (clathrin heavy 74.5 1.4 4.8E-05 52.9 3.0 71 882-969 124-197 (449)
480 2erx_A GTP-binding protein DI- 74.4 1.6 5.5E-05 43.7 3.0 20 273-292 5-24 (172)
481 2ius_A DNA translocase FTSK; n 74.2 1.7 5.7E-05 53.3 3.6 39 271-309 167-209 (512)
482 1u8z_A RAS-related protein RAL 74.2 1.6 5.6E-05 43.3 3.1 20 273-292 6-25 (168)
483 1tf5_A Preprotein translocase 74.1 8.4 0.00029 49.6 10.1 65 249-322 83-147 (844)
484 1b0u_A Histidine permease; ABC 74.1 1.7 6E-05 48.4 3.5 22 271-292 32-53 (262)
485 1mv5_A LMRA, multidrug resista 74.1 1.6 5.5E-05 48.0 3.1 22 271-292 28-49 (243)
486 2fsf_A Preprotein translocase 74.0 6.7 0.00023 50.4 9.1 67 248-323 73-139 (853)
487 1g6h_A High-affinity branched- 74.0 1.6 5.5E-05 48.4 3.2 22 271-292 33-54 (257)
488 2zu0_C Probable ATP-dependent 74.0 1.9 6.3E-05 48.3 3.7 23 271-293 46-68 (267)
489 2ghi_A Transport protein; mult 73.9 1.8 6.1E-05 48.2 3.5 23 271-293 46-68 (260)
490 2nzj_A GTP-binding protein REM 73.8 1.7 5.7E-05 43.8 3.0 20 273-292 6-25 (175)
491 1z0j_A RAB-22, RAS-related pro 73.8 1.7 5.8E-05 43.5 3.0 20 273-292 8-27 (170)
492 1r2q_A RAS-related protein RAB 73.7 1.7 5.9E-05 43.4 3.1 20 273-292 8-27 (170)
493 4akg_A Glutathione S-transfera 73.6 1.8 6E-05 62.7 4.1 40 250-295 630-669 (2695)
494 1ji0_A ABC transporter; ATP bi 73.5 1.7 5.8E-05 47.8 3.2 22 271-292 32-53 (240)
495 3q85_A GTP-binding protein REM 73.5 1.7 5.9E-05 43.5 3.1 19 274-292 5-23 (169)
496 1c1y_A RAS-related protein RAP 73.5 1.8 6E-05 43.2 3.1 19 274-292 6-24 (167)
497 1vpl_A ABC transporter, ATP-bi 73.5 1.9 6.3E-05 48.0 3.5 22 271-292 41-62 (256)
498 3sop_A Neuronal-specific septi 73.4 1.6 5.5E-05 48.9 3.0 24 273-296 4-27 (270)
499 2pze_A Cystic fibrosis transme 73.2 1.7 5.9E-05 47.3 3.1 22 271-292 34-55 (229)
500 2olj_A Amino acid ABC transpor 73.2 1.9 6.5E-05 48.2 3.5 22 271-292 50-71 (263)
No 1
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=100.00 E-value=8.6e-78 Score=762.95 Aligned_cols=606 Identities=25% Similarity=0.282 Sum_probs=427.6
Q ss_pred CChHHHHhhchhhHHHHHHHHHHHhhhccCCCCceE---------EEeee--ecCCCCCceEEEEEeeecccccCCCCCC
Q 048652 48 QSVKQYFGSFVFPLLEETRMQLRSGLEAMRRAPYAE---------VIAFE--ELKPYGANRYGIEVDYWRNTICNSGKEP 116 (1382)
Q Consensus 48 ~S~~~Y~~sF~ppLlEEtra~l~Ssle~is~ap~~~---------i~~ve--~~~~~~~~~y~i~v~~~~~~~~~~~~e~ 116 (1382)
.|+++|++.|.++|-.|-.+++....+.+...+..+ -+.+. ....++..++.+....... ...--.
T Consensus 2 ~~~~~~~~~~~~Ll~~E~~~e~~~~~~~~~~~~~~~~~~~G~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~---~~~l~~ 78 (646)
T 4b3f_X 2 AAVESFVTKQLDLLELERDAEVEERRSWQENISLKELQSRGVCLLKLQVSSQRTGLYGRLLVTFEPRRYGS---AAALPS 78 (646)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCHHHHGGGTSEEEEEEEEEEEECSSSCEEEEEEESCC------CCCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhCCceecceEEEEEEecCCCeEEEEEEecCCCC---CCCCcc
Confidence 368999999999999999888876655444433211 12222 2233443445554332211 112224
Q ss_pred CCCCCCCEEEeeccCCCCcccccccCceEEEEEEEeecCCcccccccccceEEEEecC--CccccCCCCceEEEEEEecc
Q 048652 117 YKTLPGDILVLADFKPEKVSDLLRVGRMWTFVSVTMVPDDEVENKNKKKNYYEVKARN--NLQVHDGTKKSFFFIYLTNI 194 (1382)
Q Consensus 117 y~~~~GDIv~Ls~~kP~~~sdl~~~~~~~~~a~V~~v~~~~~~~~~~~~~~~~v~~s~--~i~~~~~~~~~~~~v~L~n~ 194 (1382)
+.+++||+|+|++..|.. .....|+|+++..+. +.|.... +..........+.+.++.|.
T Consensus 79 ~~~~~Gd~v~~~~~~~~~--------~~~~~g~v~~~~~~~----------i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (646)
T 4b3f_X 79 NSFTSGDIVGLYDAANEG--------SQLATGILTRVTQKS----------VTVAFDESHDFQLSLDRENSYRLLKLAND 140 (646)
T ss_dssp CCCCTTCEEEEEETTTTS--------CCCEEEEEEEEETTE----------EEEECC-------CCCSSCCEEEEEECCH
T ss_pred CCCCCCCEEEEEecCCCC--------CceEEEEEEEEeCCE----------EEEEECCccccccccCCCCcEEEEEeccc
Confidence 678999999999765432 234678999987653 4444322 22222233456789999999
Q ss_pred chhHHHHHHHhccC------CchhhhhhcCCCccchhhhhhhccccCCCCccccCCCCCCCCCHHHHHHHHHHHhhcccC
Q 048652 195 LPSKRIWNSLHMCG------NWKVITQVLGTDSVVEESCELCSLQRKGIWDEKFGPSLSSTLNEPQVGAVFACLRRLDCD 268 (1382)
Q Consensus 195 ~T~~R~~~aL~~~~------~~~li~~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~~l~~~~~~ 268 (1382)
+|+.||+.||..+. ...+.+.++...++.. ... .......+..||++|++||..++..
T Consensus 141 ~~~~r~~~al~~l~~~~~~~~~~l~~~l~~~~~p~~---------~~~---~~~~~~~~~~LN~~Q~~AV~~al~~---- 204 (646)
T 4b3f_X 141 VTYRRLKKALIALKKYHSGPASSLIEVLFGRSAPSP---------ASE---IHPLTFFNTCLDTSQKEAVLFALSQ---- 204 (646)
T ss_dssp HHHHHHHHHHHHHHTCCSSTTHHHHHHHTTSSCCCC---------CCC---CCCCCCSSTTCCHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHhhhcccCchHHHHHHHcCCCCCCC---------ccc---cCcccccCCCCCHHHHHHHHHHhcC----
Confidence 99999999998732 2234555554332211 000 0011223468999999999999974
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHHhhhhhcCCCCccccccCCcceEEecc
Q 048652 269 HKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRLVKESYKRDSRNNTPFCPLGDILLFGN 348 (1382)
Q Consensus 269 ~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l~~es~~~~~~~~~~~~~lgdIVr~Gn 348 (1382)
.++.|||||||||||+||+.++..++..+.+||+|||||.|||++++||.... .+++|+|+
T Consensus 205 --~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~-----------------~~ilRlG~ 265 (646)
T 4b3f_X 205 --KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCK-----------------QRILRLGH 265 (646)
T ss_dssp --SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTT-----------------CCEEECSC
T ss_pred --CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcC-----------------CceEEecc
Confidence 68999999999999999999999999999999999999999999999997532 25999999
Q ss_pred CCCCCcCchhhhhcHHHHHHHHhhhccCCcccchhhhhhhHHHhhHHHHHHHHHHHHhhhhccccchhHHHHHhhhhccC
Q 048652 349 KDRLKVNPGFEEIYLDYRVKRLMECFAPLSGWRHCFSSMIDLLEDCVSQYHIYVEKLKEREDCNENQSEEKKCRKETEGS 428 (1382)
Q Consensus 349 ~~rm~I~~~L~~v~Ld~Rv~~L~~~f~~~tgW~~~l~s~i~~Le~~~~~y~~~l~~~k~~~~~~~~~~~~~~i~~~~~~~ 428 (1382)
+.++ .+.+....++..+.+-. .. .. +.+. ++.+.......
T Consensus 266 ~~r~--~~~~~~~~l~~~~~~~~--------~~----~~---~~~~-----------------------~~~~~~~~~~~ 305 (646)
T 4b3f_X 266 PARL--LESIQQHSLDAVLARSD--------SA----QI---VADI-----------------------RKDIDQVFVKN 305 (646)
T ss_dssp CSSC--CHHHHTTBHHHHHTTTT--------CS----ST---HHHH-----------------------HHHHTTSSTTT
T ss_pred hhhh--hhhhhhhhHHHHHhhch--------HH----HH---HHHH-----------------------HHHHHHHHHhh
Confidence 9975 66777777765433200 00 00 0000 00000000000
Q ss_pred cCCCCchhHHHHhhhhhhhhhHHhhHHHhhcCCCccccchhhHHhHHHHHHHHHHHHHHHhccCCCHHHHHHHhcccccc
Q 048652 429 KGECKPFLEYVRESFNCAVIPLRNCIFIFCTHLPKTYISENSFQDMVALKSLLDSFRSLLFQKNVVSEELEKLFSHSVDE 508 (1382)
Q Consensus 429 kk~~~sf~eflk~r~~~l~~~L~~~~~~l~~~lP~s~i~~~~~~~m~~~~~lL~~l~~lL~~~~l~~eel~~~~~~~~~~ 508 (1382)
++... . ... ..
T Consensus 306 ~~~~~-------~-------------------~~~---------------------------------------~~---- 316 (646)
T 4b3f_X 306 KKTQD-------K-------------------REK---------------------------------------SN---- 316 (646)
T ss_dssp TC--------------------------------C---------------------------------------CS----
T ss_pred hhhhh-------H-------------------HHH---------------------------------------HH----
Confidence 00000 0 000 00
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhHHHHHHhcCCcEEEEcccccccc---ccccCCCcc
Q 048652 509 DFSLAFVGKRYLLQLHQRRSECLSVLRNLWNSLDELNLPCTTSKQLLKDFCFKRASLFFSTASSSYKL---HSVKIEPLN 585 (1382)
Q Consensus 509 ~~~~~~~~~~~~~~l~~~R~~~~~~L~~L~~~l~~~~lp~~~~~~~i~~~iL~~a~VI~~T~sss~~l---~~~~~~~fd 585 (1382)
........+.+ ++.. ........+..++||++|+++++.. .......||
T Consensus 317 ----------~~~~~~~l~~~----l~~~--------------~~~~~~~~l~~~~vv~~t~~~a~~~~~~~~~~~~~Fd 368 (646)
T 4b3f_X 317 ----------FRNEIKLLRKE----LKER--------------EEAAMLESLTSANVVLATNTGASADGPLKLLPESYFD 368 (646)
T ss_dssp ----------SHHHHHHHHHH----HHHH--------------HHHHHHHHHHHCSEEEEETTTTCSSSGGGGSCTTCCS
T ss_pred ----------HHHHHHHHHHH----HHHH--------------HHHHHHHHHhhcceeeeehhhhhhhhHHHhhhhccCC
Confidence 00000000000 0000 1112233577899999999887652 334457899
Q ss_pred EEEecccccCChHHHHHHHHhcCCCeEEEEecCCCCCccccccccccCCccccHHHHHHhc--CCCceecccccCCCccc
Q 048652 586 FLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLTLL--NHSKHLLDIQYRMHPSI 663 (1382)
Q Consensus 586 ~VIIDEAsQ~~E~e~lipL~l~~~krlVLVGD~~QLpP~V~s~~a~~~g~~~SLFeRL~~~--~~~~~~L~~QYRmhp~I 663 (1382)
+||||||+|+.|+++++|+. .++++|+||||+||||++.+..+...|++.|+|+|+... +.+.++|++||||||.|
T Consensus 369 ~vIIDEAsQ~~e~~~lipL~--~~~~~ILVGD~~QLpP~v~~~~a~~~gl~~SlferL~~~~~~~~v~~L~~qYRmhp~I 446 (646)
T 4b3f_X 369 VVVIDECAQALEASCWIPLL--KARKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLAEEYGARVVRTLTVQYRMHQAI 446 (646)
T ss_dssp EEEETTGGGSCHHHHTTTGG--GSSEEEEEECTTSCCCCCSCHHHHHTTTTCCHHHHHHHHHGGGTEEECCEESSSCHHH
T ss_pred EEEEcCccccchHHHHhhcc--ccceEEEcCCccccCceecchhhhhccccchHHHHHHHhcCCceeeecccccCCcHHH
Confidence 99999999999999999985 468999999999999999999888999999999999875 33467899999999999
Q ss_pred cccccccccccccccCccccccccccc---CCCCCCCCCeEEEEecCCc----ccccccCCCCHHHHHHHHHHHHHHHHh
Q 048652 664 SLFPNLQFYRNQILDGANVKSKSYEKH---YLPGTEFGPYTFINIIGGR----EEFIYHSCRNMVEVSVVIKILQKLYKA 736 (1382)
Q Consensus 664 ~~f~n~~FY~g~L~~~~~v~~~~~~~~---~l~~~~~~p~~fidv~~g~----e~~~~~S~~N~~Ea~~V~~lV~~L~~~ 736 (1382)
+.|+|+.||+|+|.+++.+..+..... ........|+.|+|+.+.. ++..+.|+.|..||..|..+++.|++.
T Consensus 447 ~~f~n~~fY~g~L~~~~~~~~~~~~~lp~~~~~~~~~~p~~f~d~~g~~~~~~~~~~~~s~~N~~EA~~V~~~v~~L~~~ 526 (646)
T 4b3f_X 447 MRWASDTMYLGQLTAHSSVARHLLRDLPGVAATEETGVPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDA 526 (646)
T ss_dssp HHHHHHHHSTTCCEECTTTTTCCGGGSTTCCCCTTTTCSEEEEECTTSSCCCCC-----CCCCHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHhhcCCccccCcchhhhhhccccccccccccCCceEEEecCCCccccccccCCccccCHHHHHHHHHHHHHHHhc
Confidence 999999999999999887766543221 1112234689999996542 222678999999999999999999988
Q ss_pred hcCCCCCceEEEEeccHHHHHHHHHHHhhhhcCCCCCcEEEecccCCCCccccEEEEeecccCCCCCcccccCCCcceee
Q 048652 737 WVGSKQMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQRVNVA 816 (1382)
Q Consensus 737 ~~~~~~~~~IgVITPY~aQv~~I~~~L~~~~~~~~~~~v~V~TVD~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRLNVA 816 (1382)
+... .+|||||||++|+..|++.|.+.+ ..++|+|||+|||+|+||||+|+||+|..+.+||+.|+||+|||
T Consensus 527 gv~~---~dIgVItpYraQ~~~l~~~l~~~~-----~~i~v~TVd~fQG~E~dvII~S~vrsn~~~~iGFl~~~rRlNVA 598 (646)
T 4b3f_X 527 GVPA---RDIAVVSPYNLQVDLLRQSLVHRH-----PELEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRINVA 598 (646)
T ss_dssp TCCG---GGEEEEESCHHHHHHHHHHHTTTC-----TTCEEEEGGGGTTCCEEEEEEECCCCCTTCCCCSTTCHHHHHHH
T ss_pred CCCc---CcEEEECCCHHHHHHHHHHHHHhC-----CCCEECChhhcccccCCEEEEEeccCCCCCCccccCCcCcEEeE
Confidence 7653 489999999999999999997753 36899999999999999999999999999999999999999999
Q ss_pred cccccceEEEEechhhhhcCccHHHHHHHHHHhcCceeccc
Q 048652 817 LTRARHCLWILGNERTLISSESIWGTLVCDAKARQCFFKAD 857 (1382)
Q Consensus 817 lTRAK~~L~IVGn~~~L~~s~~~W~~li~~~~~r~~~~~~~ 857 (1382)
+||||++||||||..+|.+ +++|++|+++++++|+++.+.
T Consensus 599 lTRAk~~liivGn~~~l~~-~~~~~~li~~~~~~g~~~~~~ 638 (646)
T 4b3f_X 599 VTRARRHVAVICDSRTVNN-HAFLKTLVEYFTQHGEVRTAF 638 (646)
T ss_dssp HHTEEEEEEEEECHHHHTT-SHHHHHHHHHHHHSSEEEEGG
T ss_pred hhhhhCeEEEEEchHHhcC-CHHHHHHHHHHHHCCCEeeHH
Confidence 9999999999999999976 589999999999999998863
No 2
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-67 Score=679.87 Aligned_cols=613 Identities=25% Similarity=0.349 Sum_probs=417.9
Q ss_pred chHHHhhhccccccccccccccCChHHHHhhchhhHHHHHHHHHHHhhhccCCCCceEEEeeeecCCCCCceEEEEEeee
Q 048652 26 SLENIFNQSLFKDQVEKIPESFQSVKQYFGSFVFPLLEETRMQLRSGLEAMRRAPYAEVIAFEELKPYGANRYGIEVDYW 105 (1382)
Q Consensus 26 s~~diln~dl~~~kv~~IP~tF~S~~~Y~~sF~ppLlEEtra~l~Ssle~is~ap~~~i~~ve~~~~~~~~~y~i~v~~~ 105 (1382)
+++||.+.+ .++++.+||++|.|+.+|.+.|.|+|..|.+++.. +.......-..+.+ .....+...+.+.+...
T Consensus 164 ~l~d~~~~~-~~~~~~~v~~~y~~~~~Y~~~~~~ll~lE~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 238 (802)
T 2xzl_A 164 TINDIDAPE-EQEAIPPLLLRYQDAYEYQRSYGPLIKLEADYDKQ--LKESQALEHISVSW--SLALNNRHLASFTLSTF 238 (802)
T ss_dssp CC-------------CCCCSSCSSHHHHHHHHHHHHHHHHHHHHH--HHCCC--CCBCEEE--EECTTSCEEEEEC----
T ss_pred chhhhhccc-ccccccccccccCCHHHHHHHHHHHHHHHHHhhhh--hhhHhhccCceEee--eccCCCeEEEEEEeccc
Confidence 588988877 67889999999999999999999999999988754 22211111111111 11223333343333221
Q ss_pred cccccCCCCCCCCCCCCCEEEeeccCCCCcccccccCceEEEEEEEeecCCcccccccccceEEEEecCCc-cccCCCCc
Q 048652 106 RNTICNSGKEPYKTLPGDILVLADFKPEKVSDLLRVGRMWTFVSVTMVPDDEVENKNKKKNYYEVKARNNL-QVHDGTKK 184 (1382)
Q Consensus 106 ~~~~~~~~~e~y~~~~GDIv~Ls~~kP~~~sdl~~~~~~~~~a~V~~v~~~~~~~~~~~~~~~~v~~s~~i-~~~~~~~~ 184 (1382)
. ...+.+.+||+|.++..+|.. ......|+|.++.+... ..+.+...... ........
T Consensus 239 ~-------~~~~~~~~GD~v~l~~~~~~~-------~~~~~~g~V~~v~~~~~-------~~v~v~~~~~~~~~p~~~~~ 297 (802)
T 2xzl_A 239 E-------SNELKVAIGDEMILWYSGMQH-------PDWEGRGYIVRLPNSFQ-------DTFTLELKPSKTPPPTHLTT 297 (802)
T ss_dssp ------------CCCTTCEEEEEECSSSS-------SCEEEEEEEEECCC----------CCEEEEECCCSSCCCTTCCS
T ss_pred c-------cCCCCCCCCCEEEEEECCCCC-------CceeEEEEEEEECCCCC-------CEEEEEEeCCCCCCccccCC
Confidence 1 123578899999999655432 11235689998875311 12444432111 11112233
Q ss_pred eEEEEEEeccchhHHHHHHHhccC--C----chhhhhhcCCCccchhhhhhhccccCCCCccccCCCCCCCCCHHHHHHH
Q 048652 185 SFFFIYLTNILPSKRIWNSLHMCG--N----WKVITQVLGTDSVVEESCELCSLQRKGIWDEKFGPSLSSTLNEPQVGAV 258 (1382)
Q Consensus 185 ~~~~v~L~n~~T~~R~~~aL~~~~--~----~~li~~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV 258 (1382)
.+.+.++.|.+|+.|++.||+... . ..+...++......... ....+..+.......||++|++||
T Consensus 298 ~~~v~~~~~~~~~~r~~~AL~~~~~~~~~~~~~l~~~ll~~~~~~~~~--------~~~lp~~~~~~~~~~Ln~~Q~~Av 369 (802)
T 2xzl_A 298 GFTAEFIWKGTSYDRMQDALKKFAIDKKSISGYLYYKILGHQVVDISF--------DVPLPKEFSIPNFAQLNSSQSNAV 369 (802)
T ss_dssp SEEEEECCCCHHHHHHHHHHHHHHHCTTSBCHHHHHHHHTCCCCCCCC--------CCCCCSCCSCTTSCCCCHHHHHHH
T ss_pred CeEEEEEecCchHHHHHHHHHHHHhccccchhHHHHHhcCCccccccc--------cccCcccccccccccCCHHHHHHH
Confidence 467889999999999999998732 1 12444555443221000 000011111223467999999999
Q ss_pred HHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH-cCCceEEecCChHHHHHHHHHHHHHhhhhhcCCCCccccc
Q 048652 259 FACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR-IKCRTLACTPTNVAITELASRALRLVKESYKRDSRNNTPF 337 (1382)
Q Consensus 259 ~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~-~~~RILVcAPTN~AVDeVa~RL~~l~~es~~~~~~~~~~~ 337 (1382)
..++. .++.+|+||||||||+|++.++..|+. .+.+||+|||||.|+|++++||.+..
T Consensus 370 ~~~l~-------~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g-------------- 428 (802)
T 2xzl_A 370 SHVLQ-------RPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLG-------------- 428 (802)
T ss_dssp HHHTT-------CSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTT--------------
T ss_pred HHHhc-------CCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhC--------------
Confidence 99876 589999999999999999999999987 68999999999999999999998631
Q ss_pred cCCcceEEeccCCCCCcCchhhhhcHHHHHHHHhhhccCCcccchhhhhhhHHHhhHHHHHHHHHHHHhhhhccccchhH
Q 048652 338 CPLGDILLFGNKDRLKVNPGFEEIYLDYRVKRLMECFAPLSGWRHCFSSMIDLLEDCVSQYHIYVEKLKEREDCNENQSE 417 (1382)
Q Consensus 338 ~~lgdIVr~Gn~~rm~I~~~L~~v~Ld~Rv~~L~~~f~~~tgW~~~l~s~i~~Le~~~~~y~~~l~~~k~~~~~~~~~~~ 417 (1382)
.+++|+|++.+..+...+...+++..+.. ..
T Consensus 429 ---~~ilR~g~~~r~~i~~~~~~~tl~~~~~~----~~------------------------------------------ 459 (802)
T 2xzl_A 429 ---LKVVRLTAKSREDVESSVSNLALHNLVGR----GA------------------------------------------ 459 (802)
T ss_dssp ---CCEEECCCGGGTTSCCTTGGGBHHHHHHT----TC------------------------------------------
T ss_pred ---ccEEeecccchhhhcchhhhhhHHHHHHh----hc------------------------------------------
Confidence 14899998776544444444444332211 00
Q ss_pred HHHHhhhhccCcCCCCchhHHHHhhhhhhhhhHHhhHHHhhcCCCccccchhhHHhHHHHHHHHHHHHHHHhccCCCHHH
Q 048652 418 EKKCRKETEGSKGECKPFLEYVRESFNCAVIPLRNCIFIFCTHLPKTYISENSFQDMVALKSLLDSFRSLLFQKNVVSEE 497 (1382)
Q Consensus 418 ~~~i~~~~~~~kk~~~sf~eflk~r~~~l~~~L~~~~~~l~~~lP~s~i~~~~~~~m~~~~~lL~~l~~lL~~~~l~~ee 497 (1382)
. ...+.+ +. ..... ..++.++
T Consensus 460 ---------------------------------------------~-----~~l~~l------~~-~~~~~--~~ls~~~ 480 (802)
T 2xzl_A 460 ---------------------------------------------K-----GELKNL------LK-LKDEV--GELSASD 480 (802)
T ss_dssp ---------------------------------------------C-----THHHHH------HH-HHHHH--SCCCHHH
T ss_pred ---------------------------------------------H-----HHHHHH------HH-HHHhh--ccCCHHH
Confidence 0 000000 00 00000 0000000
Q ss_pred HHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhHHHHHHhcCCcEEEEccccccccc
Q 048652 498 LEKLFSHSVDEDFSLAFVGKRYLLQLHQRRSECLSVLRNLWNSLDELNLPCTTSKQLLKDFCFKRASLFFSTASSSYKLH 577 (1382)
Q Consensus 498 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~~~~~~L~~L~~~l~~~~lp~~~~~~~i~~~iL~~a~VI~~T~sss~~l~ 577 (1382)
. ..+..+ .......+++.++||++|+.+++..
T Consensus 481 ~---------------------------------~~~~~~--------------~~~~~~~~l~~a~VI~~T~~~~~~~- 512 (802)
T 2xzl_A 481 T---------------------------------KRFVKL--------------VRKTEAEILNKADVVCCTCVGAGDK- 512 (802)
T ss_dssp H---------------------------------HHHHHH--------------HHHHHHHHHHTCSEEEEETTGGGCT-
T ss_pred H---------------------------------HHHHHH--------------HHHHHHHHhccCCEEEechhhcChH-
Confidence 0 000000 0112335678999999999887642
Q ss_pred cccCCCccEEEecccccCChHHHHHHHHhcCCCeEEEEecCCCCCccccccccccCCccccHHHHHHhcCCCceeccccc
Q 048652 578 SVKIEPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLTLLNHSKHLLDIQY 657 (1382)
Q Consensus 578 ~~~~~~fd~VIIDEAsQ~~E~e~lipL~l~~~krlVLVGD~~QLpP~V~s~~a~~~g~~~SLFeRL~~~~~~~~~L~~QY 657 (1382)
.+.. .||+||||||+|+.+++.++|+. .+.+++|+||||+||||++.+..+...+++.|+|+|+...+.+.++|++||
T Consensus 513 ~L~~-~fd~viIDEA~q~~e~~~li~l~-~~~~~lilvGD~~QL~pvv~s~~a~~~gl~~slferl~~~~~~~~~L~~qY 590 (802)
T 2xzl_A 513 RLDT-KFRTVLIDESTQASEPECLIPIV-KGAKQVILVGDHQQLGPVILERKAADAGLKQSLFERLISLGHVPIRLEVQY 590 (802)
T ss_dssp TCCS-CCSEEEETTGGGSCHHHHHHHHT-TTBSEEEEEECTTSCCCCCCCHHHHHTTTTCCHHHHHHHTTCCCEECCEEC
T ss_pred HHhc-cCCEEEEECccccchHHHHHHHH-hCCCEEEEEeCccccCCeechhhhhhcCCchhHHHHHHhcCCCceEeeeec
Confidence 2333 89999999999999999888885 456899999999999999988777778899999999998888889999999
Q ss_pred CCCccccccccccccccccccCcccccccccc--cCCCCCCCCCeEEEEecCCcccc--cccCCCCHHHHHHHHHHHHHH
Q 048652 658 RMHPSISLFPNLQFYRNQILDGANVKSKSYEK--HYLPGTEFGPYTFINIIGGREEF--IYHSCRNMVEVSVVIKILQKL 733 (1382)
Q Consensus 658 Rmhp~I~~f~n~~FY~g~L~~~~~v~~~~~~~--~~l~~~~~~p~~fidv~~g~e~~--~~~S~~N~~Ea~~V~~lV~~L 733 (1382)
||||+|++|+|..||+|+|.+++....+.... ..++. ...|+.|+++. |.++. .+.|+.|..||+.|.+++..|
T Consensus 591 Rm~p~I~~f~n~~fY~g~L~~~~~~~~r~~~~~~~~~~~-~~~p~~f~~~~-g~~~~~~~~~s~~N~~EA~~V~~~v~~L 668 (802)
T 2xzl_A 591 RMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPI-RGIPMMFWANY-GREEISANGTSFLNRIEAMNCERIITKL 668 (802)
T ss_dssp SSCHHHHHHHHHHHSTTCCEESSCTTTTCCTTCCCCCSS-TTCCEEEEECC-CCCEECTTSSSEECHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhcCCccccCCchhhhccccccCCCCC-CCCCEEEEEcC-CceeecCCCCCcCCHHHHHHHHHHHHHH
Confidence 99999999999999999998877655433211 11121 24688999884 43333 678899999999999999999
Q ss_pred HHhhcCCCCCceEEEEeccHHHHHHHHHHHhhhhc--CCCCCcEEEecccCCCCccccEEEEeecccCCCCCcccccCCC
Q 048652 734 YKAWVGSKQMVSIGVVSPYTAQVVAIRKKIGSEYE--NKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQ 811 (1382)
Q Consensus 734 ~~~~~~~~~~~~IgVITPY~aQv~~I~~~L~~~~~--~~~~~~v~V~TVD~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~r 811 (1382)
.+.+.. +.+|||||||++|+..|++.|.+... ......+.|+|||+|||+|+|+||+|+||+++.+.+||+.+++
T Consensus 669 ~~~g~~---~~~IgVItpy~~Q~~~I~~~L~~~~~l~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~r 745 (802)
T 2xzl_A 669 FRDGVK---PEQIGVITPYEGQRAYILQYMQMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPR 745 (802)
T ss_dssp HHTTCC---GGGEEEEESCHHHHHHHHHHHHHHCSSCHHHHHTSEEEEHHHHTTCCEEEEEEECCCCCTTCCCGGGGCHH
T ss_pred HHcCCC---cccEEEEcccHHHHHHHHHHHHHccccccccccceEEcchhhcCCCccCEEEEEeccCCCCCCcccccCcc
Confidence 887654 34899999999999999999975411 0011368999999999999999999999999888999999999
Q ss_pred cceeecccccceEEEEechhhhhcCccHHHHHHHHHHhcCceeccc
Q 048652 812 RVNVALTRARHCLWILGNERTLISSESIWGTLVCDAKARQCFFKAD 857 (1382)
Q Consensus 812 RLNVAlTRAK~~L~IVGn~~~L~~s~~~W~~li~~~~~r~~~~~~~ 857 (1382)
|+|||+||||++|+||||..+|.+ ++.|+.|+++++++||+++++
T Consensus 746 rLNVAlTRAk~~LiIvg~~~~l~~-~~~w~~ll~~~~~~~~~~~~~ 790 (802)
T 2xzl_A 746 RLNVGLTRAKYGLVILGNPRSLAR-NTLWNHLLIHFREKGCLVEGT 790 (802)
T ss_dssp HHHHHHSSEEEEEEEEECHHHHTT-SHHHHHHHHHHHHHTCEEEEE
T ss_pred ceeeeHhhhhCeEEEEECHHHhcc-ChHHHHHHHHHHHcCCeecCC
Confidence 999999999999999999999976 599999999999999999874
No 3
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=100.00 E-value=1.9e-67 Score=664.87 Aligned_cols=598 Identities=25% Similarity=0.329 Sum_probs=407.2
Q ss_pred ccccccCChHHHHhhchhhHHHHHHHHHHHhhhccCCCCceEEEeee-ecCCCCCceEEEEEeeecccccCCCCCCCCCC
Q 048652 42 KIPESFQSVKQYFGSFVFPLLEETRMQLRSGLEAMRRAPYAEVIAFE-ELKPYGANRYGIEVDYWRNTICNSGKEPYKTL 120 (1382)
Q Consensus 42 ~IP~tF~S~~~Y~~sF~ppLlEEtra~l~Ssle~is~ap~~~i~~ve-~~~~~~~~~y~i~v~~~~~~~~~~~~e~y~~~ 120 (1382)
+|+.||.|+.+|.+.|.|+|..|.+++... .+. . ...-+.+. .....+.....+.+.... ....+.
T Consensus 1 ~~~~~~~~~~~y~~~~~~ll~~E~~~~~~~-~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ 67 (624)
T 2gk6_A 1 PLGSRYEDAYQYQNIFGPLVKLEADYDKKL-KES-Q---TQDNITVRWDLGLNKKRIAYFTLPKTD--------SDMRLM 67 (624)
T ss_dssp --CCCCSSHHHHHHHHHHHHHHHHHHHHHH-HHH-T---CEEEECEEEEECTTSCEEEEEECC---------------CC
T ss_pred CcCCccCCHHHHHHHHHHHHHHHHHHHHHH-Hhh-h---hccCceEEeeecCCCceEEEEEecccc--------cCCcCC
Confidence 588999999999999999999999887532 111 1 11112221 122233333333433211 125788
Q ss_pred CCCEEEeeccCCCCcccccccCceEEEEEEEeecCCcccccccccceEEEEecCCccccCCCCceEEEEEEeccchhHHH
Q 048652 121 PGDILVLADFKPEKVSDLLRVGRMWTFVSVTMVPDDEVENKNKKKNYYEVKARNNLQVHDGTKKSFFFIYLTNILPSKRI 200 (1382)
Q Consensus 121 ~GDIv~Ls~~kP~~~sdl~~~~~~~~~a~V~~v~~~~~~~~~~~~~~~~v~~s~~i~~~~~~~~~~~~v~L~n~~T~~R~ 200 (1382)
+||+|.|+..++.. +.....|+|.++.+... ..+.|...............+.+.++.|.+|+.||
T Consensus 68 ~Gd~v~l~~~~~~~-------~~~~~~g~v~~~~~~~~-------~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 133 (624)
T 2gk6_A 68 QGDEICLRYKGDLA-------PLWKGIGHVIKVPDNYG-------DEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRM 133 (624)
T ss_dssp TTCEEEEEECSSSS-------CCCEEEEEEEECSCSSC-------SEEEEEESCCTTCCCSCCSSEEEEECCCCHHHHHH
T ss_pred CCCEEEEEECCCCC-------CCcEEEEEEEEecCCCC-------CEEEEEEccCCCCccccccceEEEEEeCCchHHHH
Confidence 99999999654322 12336799999875311 22555443221111112234678899999999999
Q ss_pred HHHHhccC------CchhhhhhcCCCccchhhhhhhccccCCCCccccCCCCCCCCCHHHHHHHHHHHhhcccCCCCCeE
Q 048652 201 WNSLHMCG------NWKVITQVLGTDSVVEESCELCSLQRKGIWDEKFGPSLSSTLNEPQVGAVFACLRRLDCDHKSGVE 274 (1382)
Q Consensus 201 ~~aL~~~~------~~~li~~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~~l~~~~~~~~~~~~ 274 (1382)
+.||+... ...+...++......... ....+..+.......||++|++||..++. .++.
T Consensus 134 ~~al~~~~~~~~~~~~~~~~~ll~~~~~~~~~--------~~~~~~~~~~~~~~~ln~~Q~~av~~~l~-------~~~~ 198 (624)
T 2gk6_A 134 QSALKTFAVDETSVSGYIYHKLLGHEVEDVII--------KCQLPKRFTAQGLPDLNHSQVYAVKTVLQ-------RPLS 198 (624)
T ss_dssp HHHHHHHHHCTTSBCSHHHHHHTTCCCCCCCC--------CCCCCSCCSCTTSCCCCHHHHHHHHHHHT-------CSEE
T ss_pred HHHHHHHHhccccchHHHHHHhcCCCCccccc--------cccCcccccccccCCCCHHHHHHHHHHhc-------CCCe
Confidence 99998732 112344444432211000 00001111112345799999999999886 5899
Q ss_pred EEEcCCCCchHHHHHHHHHHHHH-cCCceEEecCChHHHHHHHHHHHHHhhhhhcCCCCccccccCCcceEEeccCCCCC
Q 048652 275 LRWGPPGTGKTKTVSMLLFSLLR-IKCRTLACTPTNVAITELASRALRLVKESYKRDSRNNTPFCPLGDILLFGNKDRLK 353 (1382)
Q Consensus 275 LI~GPPGTGKTttI~~li~~Ll~-~~~RILVcAPTN~AVDeVa~RL~~l~~es~~~~~~~~~~~~~lgdIVr~Gn~~rm~ 353 (1382)
+|+||||||||+|++.++..|+. .+.+||+|||||.|+|++.+|+.+.. .+++|+|++.+..
T Consensus 199 li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~-----------------~~~~R~~~~~r~~ 261 (624)
T 2gk6_A 199 LIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG-----------------LKVVRLCAKSREA 261 (624)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTT-----------------CCEEECCCTGGGS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcC-----------------CeEEeeccccchh
Confidence 99999999999999999999997 68899999999999999999997531 1489999887543
Q ss_pred cCchhhhhcHHHHHHHHhhhccCCcccchhhhhhhHHHhhHHHHHHHHHHHHhhhhccccchhHHHHHhhhhccCcCCCC
Q 048652 354 VNPGFEEIYLDYRVKRLMECFAPLSGWRHCFSSMIDLLEDCVSQYHIYVEKLKEREDCNENQSEEKKCRKETEGSKGECK 433 (1382)
Q Consensus 354 I~~~L~~v~Ld~Rv~~L~~~f~~~tgW~~~l~s~i~~Le~~~~~y~~~l~~~k~~~~~~~~~~~~~~i~~~~~~~kk~~~ 433 (1382)
+...+...+++..+.. + .. .
T Consensus 262 ~~~~~~~~tl~~~~~~---~-~~---~----------------------------------------------------- 281 (624)
T 2gk6_A 262 IDSPVSFLALHNQIRN---M-DS---M----------------------------------------------------- 281 (624)
T ss_dssp CCCTTTTTBHHHHHTS---C-SS---C-----------------------------------------------------
T ss_pred hccchhhhhHHHHHHh---c-cc---h-----------------------------------------------------
Confidence 3333322333221110 0 00 0
Q ss_pred chhHHHHhhhhhhhhhHHhhHHHhhcCCCccccchhhHHhHHHHHHHHHHHHHHHhccCCCHHHHHHHhccccccchhhh
Q 048652 434 PFLEYVRESFNCAVIPLRNCIFIFCTHLPKTYISENSFQDMVALKSLLDSFRSLLFQKNVVSEELEKLFSHSVDEDFSLA 513 (1382)
Q Consensus 434 sf~eflk~r~~~l~~~L~~~~~~l~~~lP~s~i~~~~~~~m~~~~~lL~~l~~lL~~~~l~~eel~~~~~~~~~~~~~~~ 513 (1382)
.++ .++..+ ... .+... .
T Consensus 282 --------------~~l-------------------------------~~l~~~-~~~----------~~~~~---~--- 299 (624)
T 2gk6_A 282 --------------PEL-------------------------------QKLQQL-KDE----------TGELS---S--- 299 (624)
T ss_dssp --------------HHH-------------------------------HHHHTT-CC--------------CC---H---
T ss_pred --------------HHH-------------------------------HHHHHH-HHh----------hcccC---H---
Confidence 000 000000 000 00000 0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhHHHHHHhcCCcEEEEccccccccccccCCCccEEEecccc
Q 048652 514 FVGKRYLLQLHQRRSECLSVLRNLWNSLDELNLPCTTSKQLLKDFCFKRASLFFSTASSSYKLHSVKIEPLNFLVIDEAA 593 (1382)
Q Consensus 514 ~~~~~~~~~l~~~R~~~~~~L~~L~~~l~~~~lp~~~~~~~i~~~iL~~a~VI~~T~sss~~l~~~~~~~fd~VIIDEAs 593 (1382)
. .. ..++.+. ......++..++||+||+++++.. .+....||+||||||+
T Consensus 300 ----~-------~~----~~~~~~~--------------~~~~~~~l~~~~vI~~T~~~~~~~-~l~~~~fd~viIDEAs 349 (624)
T 2gk6_A 300 ----A-------DE----KRYRALK--------------RTAERELLMNADVICCTCVGAGDP-RLAKMQFRSILIDEST 349 (624)
T ss_dssp ----H-------HH----HHHHHHH--------------HHHHHHHHHTCSEEEEETGGGGCG-GGTTCCCSEEEETTGG
T ss_pred ----H-------HH----HHHHHHH--------------HHHHHHHHhcCCEEEEcChhhcch-hhhcCCCCEEEEeccc
Confidence 0 00 0001111 112345788999999999887642 2344689999999999
Q ss_pred cCChHHHHHHHHhcCCCeEEEEecCCCCCccccccccccCCccccHHHHHHhcCCCceecccccCCCccccccccccccc
Q 048652 594 QLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLTLLNHSKHLLDIQYRMHPSISLFPNLQFYR 673 (1382)
Q Consensus 594 Q~~E~e~lipL~l~~~krlVLVGD~~QLpP~V~s~~a~~~g~~~SLFeRL~~~~~~~~~L~~QYRmhp~I~~f~n~~FY~ 673 (1382)
|+.+++.++|+.. +++++|+||||+||||++.+..+...|++.|+|+|+...+.+.++|++||||||+|++|+|..||+
T Consensus 350 Q~~e~~~li~l~~-~~~~~ilvGD~~QL~p~v~~~~~~~~gl~~Slferl~~~~~~~~~L~~qYR~~~~I~~~~n~~fY~ 428 (624)
T 2gk6_A 350 QATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE 428 (624)
T ss_dssp GSCHHHHHHHHTT-TBSEEEEEECTTSCCCCCSCHHHHHHTTTSCHHHHHHHTTCCCEECCEECSSCHHHHHHHHHHHST
T ss_pred ccCcHHHHHHHHh-cCCeEEEecChhccCCeeecHHHHHcCCchhHHHHHHhcCCCcEEehhhhCcChhHHhhhHHhhcC
Confidence 9999998999863 568999999999999999887777788999999999988888899999999999999999999999
Q ss_pred cccccCcccccccccc--cCCCCCCCCCeEEEEecCCcccc--cccCCCCHHHHHHHHHHHHHHHHhhcCCCCCceEEEE
Q 048652 674 NQILDGANVKSKSYEK--HYLPGTEFGPYTFINIIGGREEF--IYHSCRNMVEVSVVIKILQKLYKAWVGSKQMVSIGVV 749 (1382)
Q Consensus 674 g~L~~~~~v~~~~~~~--~~l~~~~~~p~~fidv~~g~e~~--~~~S~~N~~Ea~~V~~lV~~L~~~~~~~~~~~~IgVI 749 (1382)
|+|.+++.+..+.... ..++. ...|+.|+++. |.++. .+.|+.|..||..|.+++..+++.+.. +.+||||
T Consensus 429 ~~L~~~~~~~~r~~~~~~~~~~~-~~~p~~~~~~~-g~~~~~~~~~s~~N~~Ea~~v~~~v~~l~~~g~~---~~dIgVI 503 (624)
T 2gk6_A 429 GSLQNGVTAADRVKKGFDFQWPQ-PDKPMFFYVTQ-GQEEIASSGTSYLNRTEAANVEKITTKLLKAGAK---PDQIGII 503 (624)
T ss_dssp TCCEESSCTGGGCCTTCCCCCSS-TTCCEEEEECC-CCEECCTTSSCCEEHHHHHHHHHHHHHHHTTTCC---GGGEEEE
T ss_pred cccccCCchhhhcccccCCCCCC-CCCCEEEEEcC-CcceecCCCCCccCHHHHHHHHHHHHHHHHcCCC---CCeEEEE
Confidence 9998876654432211 11122 24688899884 44433 678899999999999999999876653 3489999
Q ss_pred eccHHHHHHHHHHHhhhhcC--CCCCcEEEecccCCCCccccEEEEeecccCCCCCcccccCCCcceeecccccceEEEE
Q 048652 750 SPYTAQVVAIRKKIGSEYEN--KDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRARHCLWIL 827 (1382)
Q Consensus 750 TPY~aQv~~I~~~L~~~~~~--~~~~~v~V~TVD~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRLNVAlTRAK~~L~IV 827 (1382)
|||++|+..|++.+...... .....+.|+|||+|||+|+|+||+|+||++..+.+||+.|++|+|||+||||++|+||
T Consensus 504 tpy~~Q~~~i~~~l~~~~~~~~~~~~~v~v~TVd~fQG~E~dvVIls~vrs~~~~~~gfl~~~~rlnVAlTRAk~~L~iv 583 (624)
T 2gk6_A 504 TPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIV 583 (624)
T ss_dssp CSCHHHHHHHHHHHHHSCSSCHHHHHHSEEECHHHHTTCCEEEEEEEECC------CCTTTCHHHHHHHTTSEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHhhccccccccCceEEechhhcCCcccCEEEEEeecCCCCCCccccCCcceeeeehhhhhCcEEEE
Confidence 99999999999998753110 0113689999999999999999999999998888999999999999999999999999
Q ss_pred echhhhhcCccHHHHHHHHHHhcCceeccc
Q 048652 828 GNERTLISSESIWGTLVCDAKARQCFFKAD 857 (1382)
Q Consensus 828 Gn~~~L~~s~~~W~~li~~~~~r~~~~~~~ 857 (1382)
||..+|.+ ++.|+.++++++++||+++++
T Consensus 584 g~~~~l~~-~~~~~~li~~~~~~~~~~~~~ 612 (624)
T 2gk6_A 584 GNPKALSK-QPLWNHLLNYYKEQKVLVEGP 612 (624)
T ss_dssp ECHHHHTT-SHHHHHHHHHHHHTTCCCCSC
T ss_pred ECHHHHcc-ChHHHHHHHHHHHCCCEEeCC
Confidence 99999976 599999999999999999874
No 4
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=100.00 E-value=1.2e-66 Score=669.19 Aligned_cols=603 Identities=25% Similarity=0.332 Sum_probs=418.9
Q ss_pred cccccccccccCChHHHHhhchhhHHHHHHHHHHHhhhccCCCCceEEEeee-ecCCCCCceEEEEEeeecccccCCCCC
Q 048652 37 KDQVEKIPESFQSVKQYFGSFVFPLLEETRMQLRSGLEAMRRAPYAEVIAFE-ELKPYGANRYGIEVDYWRNTICNSGKE 115 (1382)
Q Consensus 37 ~~kv~~IP~tF~S~~~Y~~sF~ppLlEEtra~l~Ssle~is~ap~~~i~~ve-~~~~~~~~~y~i~v~~~~~~~~~~~~e 115 (1382)
.+++.+||++|.|+.+|.+.|.|+|..|.+++.. +...... .. +.+. .....+.....+.+... ..
T Consensus 172 ~~~~~~v~~~y~~~~~Y~~~~~~l~~lE~~~~~~--~~e~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~--------~~ 238 (800)
T 2wjy_A 172 DEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK--LKESQTQ--DN-ITVRWDLGLNKKRIAYFTLPKT--------DS 238 (800)
T ss_dssp --CCCCCCSCCSCHHHHHHHHHHHHHHHHHHHHH--HHHHTCE--EE-ECCEEEECTTCCEEEEECCCBC--------CC
T ss_pred cccccccccccCCHHHHHHHHHHHHHHHHHhhhh--hhhhhhc--cc-eEEEEEecCCCeeEEEEEeccc--------cC
Confidence 4568999999999999999999999999888753 1111111 11 1111 12222222333333321 12
Q ss_pred CCCCCCCCEEEeeccCCCCcccccccCceEEEEEEEeecCCcccccccccceEEEEecCCccccCCCCceEEEEEEeccc
Q 048652 116 PYKTLPGDILVLADFKPEKVSDLLRVGRMWTFVSVTMVPDDEVENKNKKKNYYEVKARNNLQVHDGTKKSFFFIYLTNIL 195 (1382)
Q Consensus 116 ~y~~~~GDIv~Ls~~kP~~~sdl~~~~~~~~~a~V~~v~~~~~~~~~~~~~~~~v~~s~~i~~~~~~~~~~~~v~L~n~~ 195 (1382)
...+.+||+|.|+...|.. ......|+|.++.+... ..+.+....+..........+.+.++.|.+
T Consensus 239 ~~~l~~GD~v~l~~~~~~~-------~~~~~~g~V~~v~~~~~-------~~v~l~~~~~~~~p~~~~~~~~v~~~~~~~ 304 (800)
T 2wjy_A 239 DMRLMQGDEICLRYKGDLA-------PLWKGIGHVIKVPDNYG-------DEIAIELRSSVGAPVEVTHNFQVDFVWKST 304 (800)
T ss_dssp --CCCTTCEEEEEECSSSS-------CCEEEEEEEEECSBTTB-------SCEEEEESCCTTCCTTCCSCEEEEECCCCH
T ss_pred CCCCCCCCEEEEEECCCCC-------CCceeEEEEEEEcCCCC-------CEEEEEEccCCCCccccCCCceEEEeecCC
Confidence 2578899999999654422 22346789999875311 124444332211111223346678999999
Q ss_pred hhHHHHHHHhccCC-----c-hhhhhhcCCCccchhhhhhhccccCCCCccccCCCCCCCCCHHHHHHHHHHHhhcccCC
Q 048652 196 PSKRIWNSLHMCGN-----W-KVITQVLGTDSVVEESCELCSLQRKGIWDEKFGPSLSSTLNEPQVGAVFACLRRLDCDH 269 (1382)
Q Consensus 196 T~~R~~~aL~~~~~-----~-~li~~iL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LN~sQ~~AV~~~l~~~~~~~ 269 (1382)
|+.|++.||+.... . .+...++........ .....+..+.......||++|++||..++.
T Consensus 305 ~~~r~~~aL~~~~~~e~~~~~~l~~~ll~~~~~~~~--------~~~~l~~~~~~~~~~~Ln~~Q~~Av~~~l~------ 370 (800)
T 2wjy_A 305 SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVI--------IKCQLPKRFTAQGLPDLNHSQVYAVKTVLQ------ 370 (800)
T ss_dssp HHHHHHHHHHHHHHCTTSBCHHHHHHHTTCCCCCCC--------CCCCCCSCCSCTTSCCCCHHHHHHHHHHHT------
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHHhcCCCCCchh--------hcccCccccccccccCCCHHHHHHHHHhcc------
Confidence 99999999986321 1 233334443211000 000001111122345799999999999986
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHH-cCCceEEecCChHHHHHHHHHHHHHhhhhhcCCCCccccccCCcceEEecc
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLR-IKCRTLACTPTNVAITELASRALRLVKESYKRDSRNNTPFCPLGDILLFGN 348 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~-~~~RILVcAPTN~AVDeVa~RL~~l~~es~~~~~~~~~~~~~lgdIVr~Gn 348 (1382)
.++.+|+||||||||+|++.++..|+. .+.+||+|||||.|++++.+|+.+... +++|+|+
T Consensus 371 -~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~-----------------~vvRlg~ 432 (800)
T 2wjy_A 371 -RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGL-----------------KVVRLCA 432 (800)
T ss_dssp -SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTC-----------------CEEECCC
T ss_pred -CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCc-----------------ceEeecc
Confidence 589999999999999999999999997 689999999999999999999975311 4899998
Q ss_pred CCCCCcCchhhhhcHHHHHHHHhhhccCCcccchhhhhhhHHHhhHHHHHHHHHHHHhhhhccccchhHHHHHhhhhccC
Q 048652 349 KDRLKVNPGFEEIYLDYRVKRLMECFAPLSGWRHCFSSMIDLLEDCVSQYHIYVEKLKEREDCNENQSEEKKCRKETEGS 428 (1382)
Q Consensus 349 ~~rm~I~~~L~~v~Ld~Rv~~L~~~f~~~tgW~~~l~s~i~~Le~~~~~y~~~l~~~k~~~~~~~~~~~~~~i~~~~~~~ 428 (1382)
+.+..+...+...+++..+... .. ...+
T Consensus 433 ~~r~~i~~~~~~~tlh~~~~~~----~~------------------~~~l------------------------------ 460 (800)
T 2wjy_A 433 KSREAIDSPVSFLALHNQIRNM----DS------------------MPEL------------------------------ 460 (800)
T ss_dssp GGGGGCCCTTGGGBHHHHHHTC----TT------------------CHHH------------------------------
T ss_pred cchhhhcchhhhhhHHHHHHcC----cc------------------HHHH------------------------------
Confidence 7654333333333333222110 00 0000
Q ss_pred cCCCCchhHHHHhhhhhhhhhHHhhHHHhhcCCCccccchhhHHhHHHHHHHHHHHHHHHhccCCCHHHHHHHhcccccc
Q 048652 429 KGECKPFLEYVRESFNCAVIPLRNCIFIFCTHLPKTYISENSFQDMVALKSLLDSFRSLLFQKNVVSEELEKLFSHSVDE 508 (1382)
Q Consensus 429 kk~~~sf~eflk~r~~~l~~~L~~~~~~l~~~lP~s~i~~~~~~~m~~~~~lL~~l~~lL~~~~l~~eel~~~~~~~~~~ 508 (1382)
.++..+.... +...
T Consensus 461 -----------------------------------------------------~~l~~~~~~~-----------~~~~-- 474 (800)
T 2wjy_A 461 -----------------------------------------------------QKLQQLKDET-----------GELS-- 474 (800)
T ss_dssp -----------------------------------------------------HHHHHHHTTT-----------SCCC--
T ss_pred -----------------------------------------------------HHHHHHHHhh-----------cccC--
Confidence 0000000000 0000
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchhhHHHHHHhcCCcEEEEccccccccccccCCCccEEE
Q 048652 509 DFSLAFVGKRYLLQLHQRRSECLSVLRNLWNSLDELNLPCTTSKQLLKDFCFKRASLFFSTASSSYKLHSVKIEPLNFLV 588 (1382)
Q Consensus 509 ~~~~~~~~~~~~~~l~~~R~~~~~~L~~L~~~l~~~~lp~~~~~~~i~~~iL~~a~VI~~T~sss~~l~~~~~~~fd~VI 588 (1382)
.. . . ..++.+. ..+...+++.++||++|+++++.. .+....||+||
T Consensus 475 -~~------~--------~----~~~~~~~--------------~~~~~~~l~~a~VI~~T~~~~~~~-~l~~~~fd~vi 520 (800)
T 2wjy_A 475 -SA------D--------E----KRYRALK--------------RTAERELLMNADVICCTCVGAGDP-RLAKMQFRSIL 520 (800)
T ss_dssp -HH------H--------H----HHHHHHH--------------HHHHHHHHHHCSEEEEETGGGGCT-TTTTCCCSEEE
T ss_pred -hH------H--------H----HHHHHHH--------------HHHHHhhhccCCEEEEchhhhCCh-hhhcCCCCEEE
Confidence 00 0 0 0000000 112345788999999999887642 23446899999
Q ss_pred ecccccCChHHHHHHHHhcCCCeEEEEecCCCCCccccccccccCCccccHHHHHHhcCCCceecccccCCCcccccccc
Q 048652 589 IDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLTLLNHSKHLLDIQYRMHPSISLFPN 668 (1382)
Q Consensus 589 IDEAsQ~~E~e~lipL~l~~~krlVLVGD~~QLpP~V~s~~a~~~g~~~SLFeRL~~~~~~~~~L~~QYRmhp~I~~f~n 668 (1382)
||||+|+.+++.++|+. .+.+++|+||||+||||++.+..+...|++.|+|+|+...+.+.++|++||||||+|++|+|
T Consensus 521 IDEAsQ~~e~~~li~l~-~~~~~~ilvGD~~QLpPvv~s~~a~~~gl~~SlFerL~~~g~~~~~L~~qYRm~p~I~~f~n 599 (800)
T 2wjy_A 521 IDESTQATEPECMVPVV-LGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPS 599 (800)
T ss_dssp ETTGGGSCHHHHHHHHT-TTBSEEEEEECTTSCCCCCCCHHHHHTTTTSCHHHHHHHTTCCCEECCEECSSCHHHHHHHH
T ss_pred EECCCCCCcHHHHHHHH-hcCCeEEEecccccCCCeecchhhhhcCcchHHHHHHHhCCCCceEehhhcCCCcHHHHhhH
Confidence 99999999999888886 45689999999999999998877777889999999999888888999999999999999999
Q ss_pred ccccccccccCcccccccccc--cCCCCCCCCCeEEEEecCCcccc--cccCCCCHHHHHHHHHHHHHHHHhhcCCCCCc
Q 048652 669 LQFYRNQILDGANVKSKSYEK--HYLPGTEFGPYTFINIIGGREEF--IYHSCRNMVEVSVVIKILQKLYKAWVGSKQMV 744 (1382)
Q Consensus 669 ~~FY~g~L~~~~~v~~~~~~~--~~l~~~~~~p~~fidv~~g~e~~--~~~S~~N~~Ea~~V~~lV~~L~~~~~~~~~~~ 744 (1382)
..||+|+|.+++....+.... ..++. ...|+.|+++. |.++. .+.|+.|..||+.|.+++..+++.+.. +.
T Consensus 600 ~~fY~g~L~~~~~~~~r~~~~~~~~~~~-~~~p~~f~~~~-g~e~~~~~~~S~~N~~Ea~~V~~~v~~L~~~g~~---~~ 674 (800)
T 2wjy_A 600 NIFYEGSLQNGVTAADRVKKGFDFQWPQ-PDKPMFFYVTQ-GQEEIASSGTSYLNRTEAANVEKITTKLLKAGAK---PD 674 (800)
T ss_dssp HHHSTTCCEESSCSGGGSCTTCCCCCSS-TTSCEEEEECC-CCCEECSSBSCEECHHHHHHHHHHHHHHHHTTCC---GG
T ss_pred HHhcCCccccCCchhhhccccccccccC-CCCCEEEEEcC-CceeecCCCCcccCHHHHHHHHHHHHHHHHcCCC---cc
Confidence 999999998877654432211 11122 24688999985 43332 678999999999999999999887654 34
Q ss_pred eEEEEeccHHHHHHHHHHHhhhhcC--CCCCcEEEecccCCCCccccEEEEeecccCCCCCcccccCCCcceeecccccc
Q 048652 745 SIGVVSPYTAQVVAIRKKIGSEYEN--KDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRARH 822 (1382)
Q Consensus 745 ~IgVITPY~aQv~~I~~~L~~~~~~--~~~~~v~V~TVD~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRLNVAlTRAK~ 822 (1382)
+|||||||++|+..|++.|.+.... .....+.|+|||+|||+|+|+||+|+||++..+.+||+.+++|||||+||||+
T Consensus 675 dIgVItPy~~Q~~~I~~~L~~~~~~~~~~~~~v~V~TVd~fQG~E~dvVIlS~vrs~~~~~~gfl~d~rrLNVAlTRAk~ 754 (800)
T 2wjy_A 675 QIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARY 754 (800)
T ss_dssp GEEEECSCHHHHHHHHHHHHHHCSSCHHHHHTSEEECGGGGTTCCEEEEEEECCCCSCCCCCGGGTCHHHHHHHHTSEEE
T ss_pred cEEEEeccHHHHHHHHHHHHhcCcccccccCceEEccccccCCCcCCEEEEEecCCCCccccccccCcchhhhhHHhhhc
Confidence 8999999999999999998754210 00135899999999999999999999999988889999999999999999999
Q ss_pred eEEEEechhhhhcCccHHHHHHHHHHhcCceeccc
Q 048652 823 CLWILGNERTLISSESIWGTLVCDAKARQCFFKAD 857 (1382)
Q Consensus 823 ~L~IVGn~~~L~~s~~~W~~li~~~~~r~~~~~~~ 857 (1382)
+|+||||..+|.+ ++.|+.++++++++||+++++
T Consensus 755 ~LiIvG~~~~l~~-~~~w~~ll~~~~~~~~~~~~~ 788 (800)
T 2wjy_A 755 GVIIVGNPKALSK-QPLWNHLLNYYKEQKVLVEGP 788 (800)
T ss_dssp EEEEEECHHHHTS-SHHHHHHHHHHHHTTCEEESC
T ss_pred cEEEEECHHHhcc-CHHHHHHHHHHHHCCCEEeCC
Confidence 9999999999975 599999999999999999874
No 5
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=99.94 E-value=1.2e-25 Score=285.07 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=103.3
Q ss_pred CCccEEEecccccCChHHHHHHHHhc-CCCeEEEEecCCCCCccccccccccCCccccHHHHHHhc--CCCceecccccC
Q 048652 582 EPLNFLVIDEAAQLKESESTIPLQLA-GINHAVLIGDECQLPAMVESKISDGASFGRSLFERLTLL--NHSKHLLDIQYR 658 (1382)
Q Consensus 582 ~~fd~VIIDEAsQ~~E~e~lipL~l~-~~krlVLVGD~~QLpP~V~s~~a~~~g~~~SLFeRL~~~--~~~~~~L~~QYR 658 (1382)
..|++|+|||+|++++.+.-+...+. ..+++++|||++|- +....|-....|.++... +...+.|++|||
T Consensus 212 ~~~~~ilVDE~QD~~~~q~~ll~~l~~~~~~l~~vGD~~Qs-------Iy~frga~~~~~~~~~~~~~~~~~~~L~~nyR 284 (647)
T 3lfu_A 212 ERFTNILVDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQS-------IYGWRGAQVENIQRFLNDFPGAETIRLEQNYR 284 (647)
T ss_dssp HHCCEEEESSGGGCCHHHHHHHHHHHTTTCEEEEEECGGGC-------CCGGGTCCTTHHHHHHHHCTTCEEEEECBCSS
T ss_pred hhCCEEEEECcccCCHHHHHHHHHHhcCCCEEEEEcCchhh-------hccccCCCHHHHHHHHHhCCCCeEEEcccCCC
Confidence 36899999999999999866655543 45799999999993 222334455667666544 345788999999
Q ss_pred CCccccccccccccccccccCcccccccccccCCCCCCCCCeEEEEecCCcccccccCCCCHHHHHHHHHHHHHHHHhhc
Q 048652 659 MHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTEFGPYTFINIIGGREEFIYHSCRNMVEVSVVIKILQKLYKAWV 738 (1382)
Q Consensus 659 mhp~I~~f~n~~FY~g~L~~~~~v~~~~~~~~~l~~~~~~p~~fidv~~g~e~~~~~S~~N~~Ea~~V~~lV~~L~~~~~ 738 (1382)
|+++|.+++|..|+.+.-..+.... .......++.++... ....|+..|+..|..+...+.
T Consensus 285 s~~~I~~~~n~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-----------~~~~e~~~ia~~I~~l~~~g~ 345 (647)
T 3lfu_A 285 STSNILSAANALIENNNGRLGKKLW--------TDGADGEPISLYCAF-----------NELDEARFVVNRIKTWQDNGG 345 (647)
T ss_dssp SCHHHHHHHHHHHTTCSSCCCCCCB--------CSSCCCCCEEEEEEE-----------EHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhcccccCCccc--------cCCCCCCceEEEecC-----------ChHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999875422111110 111112345544431 125689999999999987764
Q ss_pred CCCCCceEEEEeccHHHHHHHHH
Q 048652 739 GSKQMVSIGVVSPYTAQVVAIRK 761 (1382)
Q Consensus 739 ~~~~~~~IgVITPY~aQv~~I~~ 761 (1382)
. ..+|+||+|++.|...+.+
T Consensus 346 ~---~~diaVL~r~~~~~~~l~~ 365 (647)
T 3lfu_A 346 A---LAECAILYRSNAQSRVLEE 365 (647)
T ss_dssp C---GGGEEEEESSGGGHHHHHH
T ss_pred C---ccCEEEEEeCchhHHHHHH
Confidence 3 4589999999877644433
No 6
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=99.94 E-value=1.5e-26 Score=288.30 Aligned_cols=201 Identities=17% Similarity=0.160 Sum_probs=133.5
Q ss_pred CCccEEEecccccCChHHHHHHHH-hcCCCeEEEEecCCCCCccccccccccCCccccHHHHHHhcCCCceecccccCCC
Q 048652 582 EPLNFLVIDEAAQLKESESTIPLQ-LAGINHAVLIGDECQLPAMVESKISDGASFGRSLFERLTLLNHSKHLLDIQYRMH 660 (1382)
Q Consensus 582 ~~fd~VIIDEAsQ~~E~e~lipL~-l~~~krlVLVGD~~QLpP~V~s~~a~~~g~~~SLFeRL~~~~~~~~~L~~QYRmh 660 (1382)
.++|+||||||+|+....+...+. +++..++|+|||+.||||+... +.|..+.. ..+.+.|+++||++
T Consensus 278 ~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lilvGD~~QL~~v~~g----------~~~~~l~~-~~~~~~L~~~~R~~ 346 (574)
T 3e1s_A 278 APYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVGDTDQLPPVDAG----------LPLLALAQ-AAPTIKLTQVYRQA 346 (574)
T ss_dssp CSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEEEECTTSCCCSSSC----------CHHHHHHH-HSCEEECCCCCHHH
T ss_pred ccCCEEEEcCccCCCHHHHHHHHHhCcCCCEEEEEecccccCCccCC----------cHHHHHHh-cCCEEEcceeEeCC
Confidence 368999999999999876544443 2356799999999999998532 35666665 67899999999998
Q ss_pred --ccccccccccccccccccCcccccccccccCCCCCCCCCeEEEEecCCcccccccCCCCHHHHHHHHHHHHHHHHhhc
Q 048652 661 --PSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTEFGPYTFINIIGGREEFIYHSCRNMVEVSVVIKILQKLYKAWV 738 (1382)
Q Consensus 661 --p~I~~f~n~~FY~g~L~~~~~v~~~~~~~~~l~~~~~~p~~fidv~~g~e~~~~~S~~N~~Ea~~V~~lV~~L~~~~~ 738 (1382)
+.|..+++.. ..|.+... . ..+.|+...... ..+..+.+++. +.
T Consensus 347 ~~s~I~~~a~~i-~~g~~~~~-------------~----~d~~~~~~~~~~-----------~~~~~i~~~~~-----~~ 392 (574)
T 3e1s_A 347 AKNPIIQAAHGL-LHGEAPAW-------------G----DKRLNLTEIEPD-----------GGARRVALMVR-----EL 392 (574)
T ss_dssp HTCHHHHHHHHH-HTTCCCCC-------------C----BTTEEEEECCST-----------TCHHHHHHHHH-----HT
T ss_pred CccHHHHHHHHH-hCCCCccc-------------C----CCeEEEeCCCHH-----------HHHHHHHHHHh-----cc
Confidence 6788877643 33332110 0 233455442211 11234444443 22
Q ss_pred CCCCCceEEEEeccHHH---HHHHHHHHhhhhcCC-----------------------------C----------CCcE-
Q 048652 739 GSKQMVSIGVVSPYTAQ---VVAIRKKIGSEYENK-----------------------------D----------GFTV- 775 (1382)
Q Consensus 739 ~~~~~~~IgVITPY~aQ---v~~I~~~L~~~~~~~-----------------------------~----------~~~v- 775 (1382)
.. ..+|.|+||.+.. +..+...+.+.+... + ...+
T Consensus 393 ~~--~~~~~VL~~~~~g~~gv~~lN~~l~~~lnp~~~~~~~~~~~~~~Gd~V~~~~N~~~~~v~NGdiG~i~~~~~~~l~ 470 (574)
T 3e1s_A 393 GG--PGAVQVLTPMRKGPLGMDHLNYHLQALFNPGEGGVRIAEGEARPGDTVVQTKNDYNNEIFNGTLGMVLKAEGARLT 470 (574)
T ss_dssp TS--GGGCEEEESCSSSTTSHHHHHHHHHHHHSCCSCCEECSSSEECTTCEEEECSCBTTTTBCTTCEEEEEEECSSCEE
T ss_pred Cc--ccCeEEEEeecCCchhHHHHHHHHHHHhCCCCCceeeCCeEEecCCEEEEeecCcccceecCceeEEEcCCCCEEE
Confidence 11 2479999998764 555555444332100 0 0001
Q ss_pred ---------------------EEecccCCCCccccEEEEeecccCCCCCcccccCCCcceeecccccceEEEEechhhhh
Q 048652 776 ---------------------KVKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRARHCLWILGNERTLI 834 (1382)
Q Consensus 776 ---------------------~V~TVD~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRLNVAlTRAK~~L~IVGn~~~L~ 834 (1382)
.+.|||++||+|+|.||+.++.+. ..+.+++++|||+||||+.|+|+|+...|.
T Consensus 471 v~fdg~~v~~~~~~l~~~~~ayA~TIHksQGsEfd~Vil~l~~~~-----~~~l~r~LlYvAiTRAk~~l~lvg~~~~l~ 545 (574)
T 3e1s_A 471 VDFDGNVVELTGAELFNLQLGYALTVHRAQGSEWGTVLGVLHEAH-----MPMLSRNLVYTALTRARDRFFSAGSASAWQ 545 (574)
T ss_dssp EEETTEEEEECGGGGTTEEECSEEEHHHHTTCCEEEEEEEECGGG-----GGGCCHHHHHHHHHTEEEEEEEEECHHHHH
T ss_pred EEECCeEEEEchHHhhhhhheeeeeHHHhCCccCCeEEEEcCCcc-----ccccccceEEEEeeeeeeEEEEEECHHHHH
Confidence 136999999999999999887654 345688999999999999999999998764
No 7
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.92 E-value=5.4e-25 Score=268.38 Aligned_cols=84 Identities=19% Similarity=0.155 Sum_probs=65.1
Q ss_pred cCCCCccccCCCCCCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCC-ceEEecCChHHH
Q 048652 234 RKGIWDEKFGPSLSSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKC-RTLACTPTNVAI 312 (1382)
Q Consensus 234 ~~~~~~~~~~~~~~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~-RILVcAPTN~AV 312 (1382)
+...|++++++....+||+.|++|+...+..+.. ..++.+|.||||||||+++..++..|...+. +|+++||||.|+
T Consensus 10 ~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~--~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa 87 (459)
T 3upu_A 10 HSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE--KKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAK 87 (459)
T ss_dssp -----------CCSSCCCHHHHHHHHHHHHHHHS--SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHH
T ss_pred ccCCCccccCCCccccCCHHHHHHHHHHHHHHhc--CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHH
Confidence 3456888899999999999999999988765433 2359999999999999999999999999886 899999999999
Q ss_pred HHHHHHH
Q 048652 313 TELASRA 319 (1382)
Q Consensus 313 DeVa~RL 319 (1382)
+++.+++
T Consensus 88 ~~l~~~~ 94 (459)
T 3upu_A 88 KILSKLS 94 (459)
T ss_dssp HHHHHHH
T ss_pred HHHHhhh
Confidence 9998776
No 8
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=99.92 E-value=2.8e-24 Score=275.84 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=100.9
Q ss_pred CCccEEEecccccCChHHHHHHHHhcC-CCeEEEEecCCCCCccccccccccCCccccHHHHHHhc--CCCceecccccC
Q 048652 582 EPLNFLVIDEAAQLKESESTIPLQLAG-INHAVLIGDECQLPAMVESKISDGASFGRSLFERLTLL--NHSKHLLDIQYR 658 (1382)
Q Consensus 582 ~~fd~VIIDEAsQ~~E~e~lipL~l~~-~krlVLVGD~~QLpP~V~s~~a~~~g~~~SLFeRL~~~--~~~~~~L~~QYR 658 (1382)
..|++|+|||+|+++..+.-+...+.+ ..++++|||++|. +....|-....+.++... +...+.|..|||
T Consensus 215 ~rf~~IlVDEfQDtn~~Q~~ll~~L~~~~~~l~vVGD~~Qs-------IY~fRGA~~~~~~~f~~~~~~~~~i~L~~NyR 287 (724)
T 1pjr_A 215 YKFQYIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDADQS-------IYRWRGADIQNILSFERDYPNAKVILLEQNYR 287 (724)
T ss_dssp HHCSEEEESSGGGCCHHHHHHHHHHHTTTCCEEEEECGGGC-------CCGGGTCCTHHHHTHHHHSTTCEEEEECBCSS
T ss_pred hhCCEEEEEhHhcCCHHHHHHHHHHHcCCCeEEEEECchhh-------cccccCCCHHHHHHHHHHCCCCcEEECCCCCC
Confidence 479999999999999999666555443 4689999999994 122223334444444332 345788999999
Q ss_pred CCccccccccccccccccccCcccccccccccCCCCCCCCCeEEEEecCCcccccccCCCCHHHHHHHHHHHHHHHH-hh
Q 048652 659 MHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTEFGPYTFINIIGGREEFIYHSCRNMVEVSVVIKILQKLYK-AW 737 (1382)
Q Consensus 659 mhp~I~~f~n~~FY~g~L~~~~~v~~~~~~~~~l~~~~~~p~~fidv~~g~e~~~~~S~~N~~Ea~~V~~lV~~L~~-~~ 737 (1382)
+++.|.+++|..|.++.-...... +.......++.++... ....|+..|+..|..+.. .+
T Consensus 288 St~~Il~~an~li~~n~~~~~k~l--------~~~~~~g~~i~~~~~~-----------~~~~Ea~~va~~I~~l~~~~g 348 (724)
T 1pjr_A 288 STKRILQAANEVIEHNVNRKPKRI--------WTENPEGKPILYYEAM-----------NEADEAQFVAGRIREAVERGE 348 (724)
T ss_dssp SCHHHHHHHHHHHTTCSSCCCCCC--------BCSSCCCCCEEEEEEE-----------EHHHHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHhCccccCccc--------ccccCCCCceEEEecC-----------CHHHHHHHHHHHHHHHHHhcC
Confidence 999999999998876432111110 1111112345444431 125689999999999886 33
Q ss_pred cCCCCCceEEEEeccHHHHHHHHHHH
Q 048652 738 VGSKQMVSIGVVSPYTAQVVAIRKKI 763 (1382)
Q Consensus 738 ~~~~~~~~IgVITPY~aQv~~I~~~L 763 (1382)
. ...+|+||++.++|...+.+.|
T Consensus 349 ~---~~~diAIL~R~~~~~~~le~~L 371 (724)
T 1pjr_A 349 R---RYRDFAVLYRTNAQSRVMEEML 371 (724)
T ss_dssp C---CGGGEEEEESSGGGHHHHHHHH
T ss_pred C---ChhheeeeeecchhHHHHHHHH
Confidence 3 2458999999998876655443
No 9
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=99.91 E-value=1.7e-23 Score=266.74 Aligned_cols=144 Identities=15% Similarity=0.054 Sum_probs=94.4
Q ss_pred CCccEEEecccccCChHHHHHHHHhcC-CCeEEEEecCCCCCccccccccccCCccccHHHHHHhc--CCCceecccccC
Q 048652 582 EPLNFLVIDEAAQLKESESTIPLQLAG-INHAVLIGDECQLPAMVESKISDGASFGRSLFERLTLL--NHSKHLLDIQYR 658 (1382)
Q Consensus 582 ~~fd~VIIDEAsQ~~E~e~lipL~l~~-~krlVLVGD~~QLpP~V~s~~a~~~g~~~SLFeRL~~~--~~~~~~L~~QYR 658 (1382)
..|++|+|||+|++++.+.-+...+.+ ..++++|||++|- +....|-....|.++... +...+.|+.|||
T Consensus 206 ~~~~~ilVDEfQDt~~~Q~~ll~~L~~~~~~l~~vGD~~Qs-------Iy~frga~~~~~~~~~~~~~~~~~~~L~~nyR 278 (673)
T 1uaa_A 206 NKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQS-------IYSWRGARPQNLVLLSQDFPALKVIKLEQNYR 278 (673)
T ss_dssp TTCSEEEESCGGGCBHHHHHHHHHHHTTTCCEEEECCGGGC-------CCGGGTBCTTHHHHHHHHSTTCEEECCCCBSS
T ss_pred hhCcEEEEeccccCCHHHHHHHHHHhcCCCeEEEEeCchhh-------hhhccCCCHHHHHHHHHhCCCCeEEECCCCCC
Confidence 479999999999999999666544433 4689999999993 122233344566666543 345788999999
Q ss_pred CCccccccccccccccccccCcccccccccccCCCC-CCCCCeEEEEecCCcccccccCCCCHHHHHHHHHHHHHHH-Hh
Q 048652 659 MHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPG-TEFGPYTFINIIGGREEFIYHSCRNMVEVSVVIKILQKLY-KA 736 (1382)
Q Consensus 659 mhp~I~~f~n~~FY~g~L~~~~~v~~~~~~~~~l~~-~~~~p~~fidv~~g~e~~~~~S~~N~~Ea~~V~~lV~~L~-~~ 736 (1382)
++++|.+++|..|..+.-.... ...+. ....++.++... ....|+..|+..|..+. ..
T Consensus 279 s~~~I~~~an~~~~~~~~~~~~---------~l~~~~~~g~~i~~~~~~-----------~~~~e~~~va~~I~~l~~~~ 338 (673)
T 1uaa_A 279 SSGRILKAANILIANNPHVFEK---------RLFSELGYGAELKVLSAN-----------NEEHEAERVTGELIAHHFVN 338 (673)
T ss_dssp SCHHHHHHHHHHHHTSCCSSCC---------CCCBSSCCCCCBEEEECS-----------SHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhchhcccc---------cccccCCCCCCceEEecC-----------CHHHHHHHHHHHHHHHHhcc
Confidence 9999999999988654311100 00111 112344444331 12568999999999987 44
Q ss_pred hcCCCCCceEEEEeccHHH
Q 048652 737 WVGSKQMVSIGVVSPYTAQ 755 (1382)
Q Consensus 737 ~~~~~~~~~IgVITPY~aQ 755 (1382)
+.. ..+|+||+|.+.|
T Consensus 339 g~~---~~diaVL~r~~~~ 354 (673)
T 1uaa_A 339 KTQ---YKDYAILYRGNHQ 354 (673)
T ss_dssp CCC---TTTEEEEESSSGG
T ss_pred CCC---ccCEEEEEechhh
Confidence 433 3489999876543
No 10
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.88 E-value=1.9e-22 Score=253.77 Aligned_cols=66 Identities=32% Similarity=0.382 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH----cCCceEEecCChHHHHHHHHHHHHHh
Q 048652 251 NEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR----IKCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~----~~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
++.|+.||..++. .++.+|+||||||||||+..++..|.. .+.+|++||||+.|++++.+.+....
T Consensus 151 ~~~Q~~Ai~~~l~-------~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~ 220 (608)
T 1w36_D 151 INWQKVAAAVALT-------RRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKAL 220 (608)
T ss_dssp CCHHHHHHHHHHT-------BSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHhc-------CCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHH
Confidence 7899999999886 689999999999999999999999884 35799999999999999888776543
No 11
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=99.84 E-value=4.1e-19 Score=239.75 Aligned_cols=70 Identities=23% Similarity=0.241 Sum_probs=61.0
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcC------CceEEecCChHHHHHHHHHHH
Q 048652 247 SSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIK------CRTLACTPTNVAITELASRAL 320 (1382)
Q Consensus 247 ~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~------~RILVcAPTN~AVDeVa~RL~ 320 (1382)
...||+.|++||... .+..+|.|+||||||+|++.++..++..+ .+||++||||+|+.+|.+|+.
T Consensus 8 ~~~~t~eQ~~~i~~~---------~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~ 78 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVST---------GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIA 78 (1232)
T ss_dssp --CCCHHHHHHHHCC---------SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCC---------CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHH
Confidence 457999999999843 57899999999999999999999999774 499999999999999999998
Q ss_pred HHhhh
Q 048652 321 RLVKE 325 (1382)
Q Consensus 321 ~l~~e 325 (1382)
..+.+
T Consensus 79 ~~l~~ 83 (1232)
T 3u4q_A 79 EALEK 83 (1232)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86543
No 12
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=99.82 E-value=4.7e-20 Score=220.11 Aligned_cols=199 Identities=16% Similarity=0.148 Sum_probs=128.4
Q ss_pred CccEEEecccccCChHHHHHHHHhcCCCeEEEEecCCCCCccccccccccCCcccc-HHHHHHhcCCCceecccccCCCc
Q 048652 583 PLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDGASFGRS-LFERLTLLNHSKHLLDIQYRMHP 661 (1382)
Q Consensus 583 ~fd~VIIDEAsQ~~E~e~lipL~l~~~krlVLVGD~~QLpP~V~s~~a~~~g~~~S-LFeRL~~~~~~~~~L~~QYRmhp 661 (1382)
++|+||||||+++....+...+.+.+++++|++||++||||+.... ++... -|.++. ......++.+|||++
T Consensus 234 ~~d~liiDE~sm~~~~~l~~l~~~~~~~~vilvGD~~Qlp~v~~~~-----~~~~~~~~~~l~--~~~~~~~~~SyR~p~ 306 (446)
T 3vkw_A 234 QFKRLFIDEGLMLHTGCVNFLVEMSLCDIAYVYGDTQQIPYINRVT-----GFPYPAHFAKLE--VDEVETRRTTLRCPA 306 (446)
T ss_dssp CCSEEEEETGGGSCHHHHHHHHHHTTCSEEEEEECTTSCCCCCCST-----TCCCCHHHHSCC--CSEEEEECEESSCCH
T ss_pred cCCEEEEeCcccCCHHHHHHHHHhCCCCEEEEecCcccccCcccCC-----Cccchhhhhhcc--cCcEEEeeeEeCCCH
Confidence 5899999999999877755555555669999999999999986543 12111 122221 224567899999999
Q ss_pred cccccccccccccccccCcccccccccccCCCCCCCCCeEEEEecCCcccccccCCCCHHHHHHHHHHHHHHHHhhcCCC
Q 048652 662 SISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTEFGPYTFINIIGGREEFIYHSCRNMVEVSVVIKILQKLYKAWVGSK 741 (1382)
Q Consensus 662 ~I~~f~n~~FY~g~L~~~~~v~~~~~~~~~l~~~~~~p~~fidv~~g~e~~~~~S~~N~~Ea~~V~~lV~~L~~~~~~~~ 741 (1382)
.++.+.+.. |++++.....+ ...+.+..+.+.. .. +. ...
T Consensus 307 dv~~lLs~l-Y~~~V~t~s~~--------------~~sv~~~~I~~~~-~~------~~------------------~~~ 346 (446)
T 3vkw_A 307 DVTHFLNQR-YEGHVMCTSSE--------------KKSVSQEMVSGAA-SI------NP------------------VSK 346 (446)
T ss_dssp HHHHHHHTT-SSSCCEECCCC--------------CCCEEEEECCCGG-GC------CT------------------TTS
T ss_pred HHHHHHHhh-cCCceEECCCc--------------CceEEEecccccc-cc------cc------------------ccC
Confidence 999999875 77655422111 1334444442210 00 00 000
Q ss_pred CCceEEEEeccHHHHHHHHHHHhhhhcCCCCCcEE-EecccCCCCccccEEEEeecccCCCCCcccccCCCcceeecccc
Q 048652 742 QMVSIGVVSPYTAQVVAIRKKIGSEYENKDGFTVK-VKSVDGFQGGEEDIIIISTVRCNTGGSIGFISNPQRVNVALTRA 820 (1382)
Q Consensus 742 ~~~~IgVITPY~aQv~~I~~~L~~~~~~~~~~~v~-V~TVD~fQG~E~DiVIlS~Vrsn~~~~iGFl~d~rRLNVAlTRA 820 (1382)
+..--|||+..+....+.+. ++. +.|||++||.|+|.|.+.. .+......|..++.+++||+|||
T Consensus 347 -~~~g~iLtftq~~k~~L~~~-----------G~~~~~Tv~e~QG~tf~~Vtlvr--~~~~~~~l~~~~~~~~~VALTRh 412 (446)
T 3vkw_A 347 -PLKGKILTFTQSDKEALLSR-----------GYADVHTVHEVQGETYADVSLVR--LTPTPVSIIARDSPHVLVSLSRH 412 (446)
T ss_dssp -CCCSEEEESSHHHHHHHHTT-----------TCCSCEETGGGTTCCEEEEEEEE--CCCSCCTTCSTTCHHHHHHHSSE
T ss_pred -CCCCeEEEcCHHHHHHHHHh-----------CCCCccCHHHcCCcccCeEEEEE--CCCCCcccccCCccceEEEeecC
Confidence 01124788887777766531 233 8999999999999988743 33222333445788999999999
Q ss_pred cceEEEEechhhhhcCccHHHHHHHHHH
Q 048652 821 RHCLWILGNERTLISSESIWGTLVCDAK 848 (1382)
Q Consensus 821 K~~L~IVGn~~~L~~s~~~W~~li~~~~ 848 (1382)
|+.|.++.-. +..|-+.|.++.
T Consensus 413 ~~~L~~~tv~------~D~~~~~i~~~~ 434 (446)
T 3vkw_A 413 TKSLKYYTVV------MDPLVSIIRDLE 434 (446)
T ss_dssp EEEEEEEESS------CCHHHHHHHHHH
T ss_pred CCEEEEEEec------CChHHHHHHHhh
Confidence 9999998532 356666666665
No 13
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=99.69 E-value=4.6e-16 Score=209.47 Aligned_cols=172 Identities=14% Similarity=0.075 Sum_probs=95.3
Q ss_pred CCccEEEecccccCChHHHHHHHHhcC---CCeEEEEecCCCCCccccccccccCCccccHHHHHHhcCCCceecccccC
Q 048652 582 EPLNFLVIDEAAQLKESESTIPLQLAG---INHAVLIGDECQLPAMVESKISDGASFGRSLFERLTLLNHSKHLLDIQYR 658 (1382)
Q Consensus 582 ~~fd~VIIDEAsQ~~E~e~lipL~l~~---~krlVLVGD~~QLpP~V~s~~a~~~g~~~SLFeRL~~~~~~~~~L~~QYR 658 (1382)
..|++|+|||+|++++.|.-+.-.+.+ ..++++|||++|- +....|-+...|.+........+.|.+|||
T Consensus 376 ~r~~~ilVDEfQDtn~~Q~~il~~L~~~~~~~~l~~VGD~kQS-------IY~FRGAd~~~~~~~~~~~~~~~~L~~NyR 448 (1180)
T 1w36_B 376 TRFPVAMIDEFQDTDPQQYRIFRRIWHHQPETALLLIGDPKQA-------IYAFRGADIFTYMKARSEVHAHYTLDTNWR 448 (1180)
T ss_dssp HHCSEEEECSGGGCCHHHHHHHHHHHTTCTTCEEEEEECGGGC-------CCGGGTCCHHHHHHHHHHCCCEEECCEETT
T ss_pred hCCCEEEEECCccCCHHHHHHHHHHHcCCCCCeEEEEECCccc-------cccCcCCCHHHHHHHHHhcCCceeCCCCcC
Confidence 469999999999999999766655432 4589999999993 111222222233333332345788999999
Q ss_pred CCccccccccccccccccccC-ccccccc-----cccc--C-CCCCCCCCeEEEEecCCcccccccCCCCHHHHHHHHHH
Q 048652 659 MHPSISLFPNLQFYRNQILDG-ANVKSKS-----YEKH--Y-LPGTEFGPYTFINIIGGREEFIYHSCRNMVEVSVVIKI 729 (1382)
Q Consensus 659 mhp~I~~f~n~~FY~g~L~~~-~~v~~~~-----~~~~--~-l~~~~~~p~~fidv~~g~e~~~~~S~~N~~Ea~~V~~l 729 (1382)
++|+|.+++|..|-...-... ..+.... .... + ..+...+++.++..... . .........|+..|+..
T Consensus 449 S~~~Il~~~N~lf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~-~~~~~~~~~ea~~iA~~ 525 (1180)
T 1w36_B 449 SAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGE--S-CGVGDYQSTMAQVCAAQ 525 (1180)
T ss_dssp SCHHHHHHHHHHHHSSSSTTSSTTSCCCCCEECGGGTTEEEEETTEEECSEEEEECCSS--C-CCTTHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhccccccccCCCCcccccccccccccccccCCCCCCCeeEeecCCC--c-cCcchHHHHHHHHHHHH
Confidence 999999999998744211000 0000000 0000 0 00110112333222110 0 00001124688999999
Q ss_pred HHHHHHhhc------------CCCCCceEEEEeccHHHHHHHHHHH
Q 048652 730 LQKLYKAWV------------GSKQMVSIGVVSPYTAQVVAIRKKI 763 (1382)
Q Consensus 730 V~~L~~~~~------------~~~~~~~IgVITPY~aQv~~I~~~L 763 (1382)
|..++..+. .+....||+|+++.+.|...|.+.|
T Consensus 526 I~~l~~~~~~~~~~~~~~~~~~~~~~~DIAIL~R~~~~~~~i~~~L 571 (1180)
T 1w36_B 526 IRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDAL 571 (1180)
T ss_dssp HHHHHHHHHTTCEEEEETTEEEECCGGGEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHhcccccceecCCcccCCCCcccEEEEeecchHHHHHHHHH
Confidence 999887521 1234568999997765544444443
No 14
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=99.36 E-value=9.9e-13 Score=139.54 Aligned_cols=144 Identities=16% Similarity=0.086 Sum_probs=99.7
Q ss_pred ccccCCCccccccccccccccccccCcccccccccccCCCCCCCCCeEEEEecCCcccccccCCCCHHHHHHHHHHHHHH
Q 048652 654 DIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTEFGPYTFINIIGGREEFIYHSCRNMVEVSVVIKILQKL 733 (1382)
Q Consensus 654 ~~QYRmhp~I~~f~n~~FY~g~L~~~~~v~~~~~~~~~l~~~~~~p~~fidv~~g~e~~~~~S~~N~~Ea~~V~~lV~~L 733 (1382)
++|||++++|.+++|..+.++. .+.. . ...| .+..++.... ...|+..|.+.|..
T Consensus 2 ~~NYRSt~~Il~~An~li~~~~-----~~~~--~---~~~G---~~p~~~~~~~-----------~~~e~~~i~~~I~~- 56 (174)
T 3dmn_A 2 NASYRSTQQITDFTKEILVNGE-----AVTA--F---DRQG---DLPNVVVTPN-----------FEAGVDQVVDQLAM- 56 (174)
T ss_dssp -CCCCCCHHHHHHHHTTSCC------------------CCC---CCCEEEEESS-----------HHHHHHHHHHHHHH-
T ss_pred CCCCCChHHHHHHHHHHhcCCC-----cccC--C---CCCC---CCCEEEEeCC-----------HHHHHHHHHHHHHH-
Confidence 5799999999999998775432 0100 0 0111 2233333311 14578888888887
Q ss_pred HHhhcCCCCCceEEEEeccHHHHHHHHHHHhhhh-c--------CCCCCcEEEecccCCCCccccEEEEeecccCCCCCc
Q 048652 734 YKAWVGSKQMVSIGVVSPYTAQVVAIRKKIGSEY-E--------NKDGFTVKVKSVDGFQGGEEDIIIISTVRCNTGGSI 804 (1382)
Q Consensus 734 ~~~~~~~~~~~~IgVITPY~aQv~~I~~~L~~~~-~--------~~~~~~v~V~TVD~fQG~E~DiVIlS~Vrsn~~~~i 804 (1382)
...+ ..+||||+|.+.|...+.+.|.... + .....++.|.|+|.+||.|+|.||+..+.....
T Consensus 57 ~~~g-----~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~~~~~~v~v~t~~~~KGlEf~~V~~~~~~~~~~--- 128 (174)
T 3dmn_A 57 NDSE-----RDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQENY--- 128 (174)
T ss_dssp HHHT-----TCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC-CCCSSEEEEEGGGCTTCCEEEEEEETCBTTTS---
T ss_pred hccC-----CCcEEEEecCHHHHHHHHHHHHHcCCcceeecccccccCCCeEEEEccccCCcCCCEEEEecCCcccC---
Confidence 4433 3489999999999999999997651 1 112346999999999999999999987654321
Q ss_pred ccccCCCcceeecccccceEEEEech
Q 048652 805 GFISNPQRVNVALTRARHCLWILGNE 830 (1382)
Q Consensus 805 GFl~d~rRLNVAlTRAK~~L~IVGn~ 830 (1382)
....+++++|||+||||+.|+|++..
T Consensus 129 ~~~~~~~llYva~TRA~~~l~~~~~~ 154 (174)
T 3dmn_A 129 QREDERQLLYTICSRAMHELTLVAVG 154 (174)
T ss_dssp CSGGGHHHHHHHHTTEEEEEEEEEES
T ss_pred CChhhhceeEEEecCcccEEEEEeCC
Confidence 12457789999999999999999754
No 15
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=99.11 E-value=7e-10 Score=149.69 Aligned_cols=152 Identities=11% Similarity=0.048 Sum_probs=92.8
Q ss_pred cEEEecccccCChHHHHHHHHhc-CCCeEE--EEecCCCCCccccccccccCCcc---ccHHHHHHh-cCCC---ceecc
Q 048652 585 NFLVIDEAAQLKESESTIPLQLA-GINHAV--LIGDECQLPAMVESKISDGASFG---RSLFERLTL-LNHS---KHLLD 654 (1382)
Q Consensus 585 d~VIIDEAsQ~~E~e~lipL~l~-~~krlV--LVGD~~QLpP~V~s~~a~~~g~~---~SLFeRL~~-~~~~---~~~L~ 654 (1382)
++|+|||+|+.++.+.-+.-.+. ..++++ +|||+.+.+... ....-+++. ...+.++.. .+.+ .+.|.
T Consensus 203 ~~IlVDEfQD~~~~Q~~ll~~L~~~~~~~~v~lvGD~~~~~~~~--~~QsIY~~rga~~~~l~~~~~~~~~~~~~~~~L~ 280 (1166)
T 3u4q_B 203 AHIYVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREP--HELELFRMTGKTYYRLHQKAKELNLDITYKELSG 280 (1166)
T ss_dssp CEEEECSCSCCCHHHHHHHHHHHHHCSEEEEEEECSSCCSSSCC--CTTCTTHHHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEEeCcccccCCC--CCCCcchhHHHHHHHHHHHHHHcCCCcccceecC
Confidence 79999999999999966655443 245554 669965532100 000112222 222333332 2333 67899
Q ss_pred cccCCCccccccccccccccccccCcccccccccccCCCCCCCCCeEEEEecCCcccccccCCCCHHHHHHHHHHHHHHH
Q 048652 655 IQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKHYLPGTEFGPYTFINIIGGREEFIYHSCRNMVEVSVVIKILQKLY 734 (1382)
Q Consensus 655 ~QYRmhp~I~~f~n~~FY~g~L~~~~~v~~~~~~~~~l~~~~~~p~~fidv~~g~e~~~~~S~~N~~Ea~~V~~lV~~L~ 734 (1382)
.+||++++|..+.+..+... + ....++. .+++.++.... ...|+..|+..|..+.
T Consensus 281 ~nyRs~~~il~~i~~~~~~~-----~--------~~~~~~~-~~~i~i~~~~~-----------~~~Ea~~ia~~I~~l~ 335 (1166)
T 3u4q_B 281 TERHTKTPELAHLEAQYEAR-----P--------AIPYAEK-QEALTVMQAAN-----------RRAELEGIAREIHALV 335 (1166)
T ss_dssp CSTTTTCHHHHHHHHSSSCS-----S--------CCCCCSC-CSSEEEEEESS-----------HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHhHhhc-----C--------CCccCCC-CCCeEEEEcCC-----------hHHHHHHHHHHHHHHH
Confidence 99999999988776544211 0 0001111 23444444311 2468999999999988
Q ss_pred H-hhcCCCCCceEEEEeccH-HHHHHHHHHHhhh
Q 048652 735 K-AWVGSKQMVSIGVVSPYT-AQVVAIRKKIGSE 766 (1382)
Q Consensus 735 ~-~~~~~~~~~~IgVITPY~-aQv~~I~~~L~~~ 766 (1382)
. .+. ...+|+||++.+ .|...|.+.|.+.
T Consensus 336 ~~~g~---~~~diAVL~R~~~~~~~~i~~~L~~~ 366 (1166)
T 3u4q_B 336 REKGY---RYKDVAILARQPEDYKDMVKEVFADY 366 (1166)
T ss_dssp HTSCC---CGGGEEEEESCGGGTHHHHHHHHHHT
T ss_pred HhcCC---ChhheEEEeCChHHHHHHHHHHHHHc
Confidence 7 333 345899999998 5899999999775
No 16
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.69 E-value=6.3e-05 Score=80.69 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=57.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc------CCceEEecCChHHHHH-HHHH
Q 048652 246 LSSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI------KCRTLACTPTNVAITE-LASR 318 (1382)
Q Consensus 246 ~~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~------~~RILVcAPTN~AVDe-Va~R 318 (1382)
....|++.|.+|+...+. ....+|+||+|||||.+....+..++.. +.++|+++||...+++ +.+.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~-------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~ 102 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALE-------GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKE 102 (216)
T ss_dssp CCCCCCHHHHHHHHHHHT-------TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHT
T ss_pred CCCCchHHHHHHHHHHhc-------CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHH
Confidence 346899999999998876 3578999999999999998887776654 5799999999999888 5555
Q ss_pred HHHH
Q 048652 319 ALRL 322 (1382)
Q Consensus 319 L~~l 322 (1382)
+.+.
T Consensus 103 ~~~~ 106 (216)
T 3b6e_A 103 FQPF 106 (216)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 17
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.66 E-value=0.00011 Score=78.65 Aligned_cols=69 Identities=26% Similarity=0.210 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH------cCCceEEecCChHHHHHHHHHHHH
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR------IKCRTLACTPTNVAITELASRALR 321 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~------~~~RILVcAPTN~AVDeVa~RL~~ 321 (1382)
..+++.|++|+...+. ..-.+|++|+|||||.+....+...+. .+.++|+++||...+.++.+++.+
T Consensus 22 ~~~~~~Q~~~i~~~~~-------~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 94 (207)
T 2gxq_A 22 TTPTPIQAAALPLALE-------GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTA 94 (207)
T ss_dssp CSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcC-------CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHH
Confidence 4789999999998876 456999999999999986555555442 467899999999999999998887
Q ss_pred Hh
Q 048652 322 LV 323 (1382)
Q Consensus 322 l~ 323 (1382)
..
T Consensus 95 ~~ 96 (207)
T 2gxq_A 95 VA 96 (207)
T ss_dssp HC
T ss_pred Hh
Confidence 53
No 18
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=97.57 E-value=0.00013 Score=82.45 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=58.5
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcC-CceEEecCChHHHHHHHHHHHHH
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIK-CRTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~-~RILVcAPTN~AVDeVa~RL~~l 322 (1382)
..+++.|.+|+..++.. +-.+|.+|+|+|||.++..++..++..+ .++|+++||+.-+.+..+++.+.
T Consensus 112 ~~l~~~Q~~ai~~~l~~-------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp CCCCHHHHHHHHHHHHH-------SEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhc-------CCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh
Confidence 47999999999998873 4568899999999999988877777655 49999999999999999998764
No 19
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=97.50 E-value=0.00025 Score=77.74 Aligned_cols=69 Identities=19% Similarity=0.107 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHH-H------cCCceEEecCChHHHHHHHHHHH
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLL-R------IKCRTLACTPTNVAITELASRAL 320 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll-~------~~~RILVcAPTN~AVDeVa~RL~ 320 (1382)
..+++-|.+|+...+. ..-.+|++|+|||||.+....+...+ . .+.++|+++||...+.++.+++.
T Consensus 46 ~~~~~~Q~~~i~~~~~-------~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 118 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQ-------GKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLR 118 (236)
T ss_dssp CBCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-------CCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 4689999999998876 46699999999999998655444433 2 36799999999999999999888
Q ss_pred HHh
Q 048652 321 RLV 323 (1382)
Q Consensus 321 ~l~ 323 (1382)
+..
T Consensus 119 ~~~ 121 (236)
T 2pl3_A 119 KVG 121 (236)
T ss_dssp HHT
T ss_pred HHh
Confidence 754
No 20
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.47 E-value=0.00025 Score=76.86 Aligned_cols=69 Identities=20% Similarity=0.205 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHH-H--cCCceEEecCChHHHHHHHHHHHHHh
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLL-R--IKCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll-~--~~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
..+++.|++|+...+. ..-.+|.+|+|||||.+....+...+ . .+.++|+++||...+.++.+++.+..
T Consensus 35 ~~~~~~Q~~~i~~~~~-------~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIE-------GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA 106 (224)
T ss_dssp CSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhc-------CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 3689999999998876 35699999999999988544333333 2 35699999999999999999888754
No 21
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.47 E-value=0.00021 Score=79.01 Aligned_cols=66 Identities=23% Similarity=0.129 Sum_probs=54.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHH
Q 048652 246 LSSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALR 321 (1382)
Q Consensus 246 ~~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~ 321 (1382)
....|++.|.+|+...+. .+-.+|.||+|||||.++..++..+ +.++|+++||..-+.+...++.+
T Consensus 90 ~~~~l~~~Q~~ai~~~~~-------~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLV-------DKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp CCCCCCHHHHHHHHHHTT-------TSEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGG
T ss_pred CCCCcCHHHHHHHHHHHh-------CCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence 346899999999998765 2459999999999999987665543 88999999999888888777665
No 22
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=97.46 E-value=0.00026 Score=81.88 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc--CCceEEecCChHHHHHHHHHHHHHh
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI--KCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~--~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
..+++.|++|+...+.. ....+|++|+|||||.+....+..++.. +.++|+++||...+.++.+++.+..
T Consensus 27 ~~~~~~Q~~~i~~~~~~------~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 98 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLND------EYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLK 98 (367)
T ss_dssp CSCCHHHHHHHHHHHHT------CSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCC------CCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHh
Confidence 36999999999998872 3689999999999999987777666654 6799999999999999999988764
No 23
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.41 E-value=0.00031 Score=74.97 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCceEEecCChHHHHHHHHHHHHHhh
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR---IKCRTLACTPTNVAITELASRALRLVK 324 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~---~~~RILVcAPTN~AVDeVa~RL~~l~~ 324 (1382)
..+++.|++|+...+. ..-.+|.+|+|||||.+....+...+. .+.++|+++||..-+.++.+++.+...
T Consensus 24 ~~~~~~Q~~~i~~~~~-------~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 96 (206)
T 1vec_A 24 EKPSPIQEESIPIALS-------GRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 96 (206)
T ss_dssp CSCCHHHHHHHHHHHT-------TCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHcc-------CCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHh
Confidence 3689999999998876 357999999999999776544444432 256899999999999999998887643
No 24
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.38 E-value=0.00036 Score=75.46 Aligned_cols=68 Identities=16% Similarity=0.092 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc---CCceEEecCChHHHHHHHHHHHHHh
Q 048652 249 TLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI---KCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 249 ~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~---~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
.+++.|.+|+...+. ..-.+|++|+|||||.+....+...+.. +.++|+++||..-+.++.+++.+..
T Consensus 36 ~~~~~Q~~~i~~~~~-------~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 106 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL-------GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 106 (220)
T ss_dssp CCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhC-------CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 589999999998876 3459999999999998776655555443 3589999999999999998887754
No 25
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=97.38 E-value=0.00023 Score=78.36 Aligned_cols=68 Identities=22% Similarity=0.300 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCceEEecCChHHHHHHHHHHHHHh
Q 048652 249 TLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR---IKCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 249 ~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~---~~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
.+++-|.+|+...+. ..-.+|.+|+|||||.+....+...+. .+.++|+++||..-+.++..++.+..
T Consensus 52 ~~~~~Q~~ai~~i~~-------~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 122 (237)
T 3bor_A 52 KPSAIQQRAIIPCIK-------GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALG 122 (237)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHh
Confidence 589999999999876 356899999999999875554444443 35799999999999999999888754
No 26
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=97.35 E-value=0.00033 Score=75.88 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCceEEecCChHHHHHHHHHHHHHhh
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR---IKCRTLACTPTNVAITELASRALRLVK 324 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~---~~~RILVcAPTN~AVDeVa~RL~~l~~ 324 (1382)
..+++-|.+|+...+. ..-.+|.+|+|||||.+....+...+. .+.++|+++||...+.++.+++.+...
T Consensus 25 ~~~~~~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 97 (219)
T 1q0u_A 25 YKPTEIQERIIPGALR-------GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITK 97 (219)
T ss_dssp CSCCHHHHHHHHHHHH-------TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhh
Confidence 4689999999998887 356899999999999876554444443 257999999999999999998887654
No 27
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=97.35 E-value=0.00049 Score=74.96 Aligned_cols=68 Identities=22% Similarity=0.056 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH---------cCCceEEecCChHHHHHHHHH
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR---------IKCRTLACTPTNVAITELASR 318 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~---------~~~RILVcAPTN~AVDeVa~R 318 (1382)
..+++-|.+|+...+. ..-.+|.+|.|||||.+....+...+. .+.++|+++||..-+.++.++
T Consensus 41 ~~~~~~Q~~~i~~~~~-------~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 113 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQ-------GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAE 113 (228)
T ss_dssp CSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHH
Confidence 3799999999998876 456799999999999875443333322 468899999999999999998
Q ss_pred HHHH
Q 048652 319 ALRL 322 (1382)
Q Consensus 319 L~~l 322 (1382)
+.+.
T Consensus 114 ~~~~ 117 (228)
T 3iuy_A 114 CSKY 117 (228)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 28
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=97.31 E-value=0.00055 Score=75.41 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH----cCCceEEecCChHHHHHHHHHHHHHh
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR----IKCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~----~~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
..+++.|.+|+...+. ..-.+|.+|+|||||.+....+...+. .+.++|+++||..-+.++..++.+..
T Consensus 50 ~~~~~~Q~~~i~~~~~-------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 122 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLH-------GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKIS 122 (245)
T ss_dssp CSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 3689999999998876 345899999999999885444444443 35689999999999999999988764
Q ss_pred h
Q 048652 324 K 324 (1382)
Q Consensus 324 ~ 324 (1382)
.
T Consensus 123 ~ 123 (245)
T 3dkp_A 123 E 123 (245)
T ss_dssp T
T ss_pred c
Confidence 3
No 29
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=97.28 E-value=0.00071 Score=75.19 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHH-HHHc--CCceEEecCChHHHHHHHHHHHHHhh
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFS-LLRI--KCRTLACTPTNVAITELASRALRLVK 324 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~-Ll~~--~~RILVcAPTN~AVDeVa~RL~~l~~ 324 (1382)
..+++-|.+|+...+. ..-.+|.+|+|||||.+....+.. +... +.++|+++||...+.++.+++.+...
T Consensus 64 ~~~~~~Q~~~i~~i~~-------~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~ 136 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQ-------GRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGS 136 (249)
T ss_dssp CSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHhC-------CCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhc
Confidence 3689999999998876 467999999999999886544443 4443 46799999999999999999887643
No 30
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=97.26 E-value=0.00049 Score=77.09 Aligned_cols=69 Identities=17% Similarity=0.129 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHH-HHHH------cCCceEEecCChHHHHHHHHHHHH
Q 048652 249 TLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLF-SLLR------IKCRTLACTPTNVAITELASRALR 321 (1382)
Q Consensus 249 ~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~-~Ll~------~~~RILVcAPTN~AVDeVa~RL~~ 321 (1382)
.+++-|.+|+..++. ..-.+|+||.|||||.+....+. .+.. .+.++|+++||..-+.++..++.+
T Consensus 76 ~~~~~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~ 148 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE-------GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKE 148 (262)
T ss_dssp BCCHHHHHHHHHHHH-------TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhC-------CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 589999999999887 35589999999999988544443 3433 478899999999999999999988
Q ss_pred Hhh
Q 048652 322 LVK 324 (1382)
Q Consensus 322 l~~ 324 (1382)
...
T Consensus 149 ~~~ 151 (262)
T 3ly5_A 149 LMT 151 (262)
T ss_dssp HTT
T ss_pred HHh
Confidence 654
No 31
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.22 E-value=0.00072 Score=77.25 Aligned_cols=66 Identities=21% Similarity=0.270 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHHh
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
..|++.|++|+...++ ....+|.+|+|+|||.+....+ +..+.++|+++||..-+.++.+++.+..
T Consensus 15 ~~l~~~Q~~~i~~i~~-------~~~~lv~~~TGsGKT~~~~~~~---~~~~~~~liv~P~~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQ-------GKNVVVRAKTGSGKTAAYAIPI---LELGMKSLVVTPTRELTRQVASHIRDIG 80 (337)
T ss_dssp CSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHH---HHHTCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhc-------CCCEEEEcCCCCcHHHHHHHHH---HhhcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 3689999999998876 4679999999999998764433 4458999999999999999999988754
No 32
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=97.21 E-value=0.00098 Score=73.46 Aligned_cols=71 Identities=14% Similarity=0.043 Sum_probs=56.7
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHH-HHHH-------cCCceEEecCChHHHHHHHHHH
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLF-SLLR-------IKCRTLACTPTNVAITELASRA 319 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~-~Ll~-------~~~RILVcAPTN~AVDeVa~RL 319 (1382)
..+++-|.+|+...+. ..-.+|.+|+|||||.+....+. .+.. .+.++|+++||..-+.++..++
T Consensus 50 ~~~~~~Q~~~i~~~~~-------g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~ 122 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALS-------GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVA 122 (242)
T ss_dssp CSCCHHHHHHHHHHHH-------TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-------CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHH
Confidence 3589999999999887 46799999999999988544433 3332 3678999999999999999988
Q ss_pred HHHhhh
Q 048652 320 LRLVKE 325 (1382)
Q Consensus 320 ~~l~~e 325 (1382)
.+....
T Consensus 123 ~~~~~~ 128 (242)
T 3fe2_A 123 AEYCRA 128 (242)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 876543
No 33
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=97.21 E-value=0.0005 Score=81.82 Aligned_cols=68 Identities=21% Similarity=0.102 Sum_probs=58.1
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHH
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l 322 (1382)
+.+++-|.+|+..++. ..-.+|++|.|||||.+....+..++..+.++|+++||..-+.++..++.+.
T Consensus 20 ~~~~~~Q~~~i~~i~~-------~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 20 KDLTGYQRLWAKRIVQ-------GKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp SCCCHHHHHHHHHHTT-------TCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc-------CCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHH
Confidence 4688999999999876 3578999999999999665555666667899999999999999999999885
No 34
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=97.17 E-value=0.00055 Score=83.81 Aligned_cols=68 Identities=21% Similarity=0.145 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCC-ceEEecCChHHHHHHHHHHHHH
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKC-RTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~-RILVcAPTN~AVDeVa~RL~~l 322 (1382)
..|++.|.+||..++.. .-.+|+||+|+|||.+....+..++..+. ++|+++||..-+.+..+++.+.
T Consensus 112 ~~l~~~Q~~ai~~~~~~-------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVN-------RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp ECCCHHHHHHHHHHHHH-------SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhc-------CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 47999999999999873 56899999999999999887777776554 9999999999999999888653
No 35
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=97.17 E-value=0.0011 Score=73.36 Aligned_cols=69 Identities=19% Similarity=0.173 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc------------CCceEEecCChHHHHHH
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI------------KCRTLACTPTNVAITEL 315 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~------------~~RILVcAPTN~AVDeV 315 (1382)
..+++-|.+|+...+. ..-.+|.+|.|||||.+....+...+.. +.++|+++||..-+.++
T Consensus 44 ~~~~~~Q~~~i~~i~~-------~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~ 116 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILE-------HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQI 116 (253)
T ss_dssp CSCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHH
Confidence 4689999999998876 3568999999999998765555444432 35899999999999999
Q ss_pred HHHHHHHh
Q 048652 316 ASRALRLV 323 (1382)
Q Consensus 316 a~RL~~l~ 323 (1382)
.+++.+..
T Consensus 117 ~~~~~~~~ 124 (253)
T 1wrb_A 117 LSESQKFS 124 (253)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988754
No 36
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=97.16 E-value=0.00075 Score=79.46 Aligned_cols=69 Identities=20% Similarity=0.145 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCceEEecCChHHHHHHHHHHHHHhh
Q 048652 249 TLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR---IKCRTLACTPTNVAITELASRALRLVK 324 (1382)
Q Consensus 249 ~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~---~~~RILVcAPTN~AVDeVa~RL~~l~~ 324 (1382)
.+++.|++|+...+. ..-.+|.+|+|||||.+....+...+. .+.++|+++||..-+.++.+++.+...
T Consensus 43 ~~~~~Q~~~i~~i~~-------~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 114 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT-------GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGK 114 (400)
T ss_dssp SCCHHHHHHHHHHHH-------TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhc-------CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhc
Confidence 699999999999887 345899999999999876655555544 356899999999999999998887643
No 37
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=97.12 E-value=0.00084 Score=78.42 Aligned_cols=71 Identities=14% Similarity=0.134 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCceEEecCChHHHHHHHHHHHHHh
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR---IKCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~---~~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
..+++.|++|+...+.. ++...+|++|+|||||.+....+...+. .+.++|+++||..-+.++.+++.+..
T Consensus 26 ~~~~~~Q~~~i~~~~~~-----~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 99 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN-----PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMG 99 (395)
T ss_dssp CSCCHHHHHHHHHHHCS-----SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcC-----CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHh
Confidence 47999999999988762 2367999999999999987666555543 36799999999999999999888753
No 38
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.06 E-value=0.001 Score=69.70 Aligned_cols=56 Identities=20% Similarity=0.127 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHHhhccc--CCCCCeEEEEcCCCCchHHHHHHHHHHHH-HcCCceEEec
Q 048652 251 NEPQVGAVFACLRRLDC--DHKSGVELRWGPPGTGKTKTVSMLLFSLL-RIKCRTLACT 306 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~~~~--~~~~~~~LI~GPPGTGKTttI~~li~~Ll-~~~~RILVcA 306 (1382)
++.|++|+..+..-+.. .......+|+|||||||||++.++...+. ..+.+++.+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~ 74 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD 74 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 67899888877643211 12357899999999999999999888887 5676666654
No 39
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=97.06 E-value=0.0012 Score=72.01 Aligned_cols=68 Identities=21% Similarity=0.094 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHH-HHHHH--cCCceEEecCChHHHHHHHHHHHHHh
Q 048652 249 TLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLL-FSLLR--IKCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 249 ~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li-~~Ll~--~~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
.+++-|.+|+...+. ..-.+|.+|.|||||.+....+ ..+.. .+.++|+++||..-+.++.+++.+..
T Consensus 46 ~~~~~Q~~~i~~~~~-------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 116 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC-------GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIG 116 (230)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhC-------CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 589999999998876 3568999999999998854433 33332 25799999999999999999888754
No 40
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.04 E-value=0.00075 Score=72.03 Aligned_cols=55 Identities=18% Similarity=0.109 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhcccCC---CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 252 EPQVGAVFACLRRLDCDH---KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 252 ~sQ~~AV~~~l~~~~~~~---~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
+.|..++..+...+.... .+...+|+||||||||+++.++...+...+.+++.+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 32 DGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 366666665444332211 1268999999999999999999888887777776543
No 41
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.98 E-value=0.0013 Score=77.68 Aligned_cols=70 Identities=19% Similarity=0.285 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCceEEecCChHHHHHHHHHHHHHhh
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR---IKCRTLACTPTNVAITELASRALRLVK 324 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~---~~~RILVcAPTN~AVDeVa~RL~~l~~ 324 (1382)
..+++.|++|+...+. ..-.+|.+|.|||||.+....+...+. .+.++|+++||...+.++.+++.+...
T Consensus 61 ~~~~~~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 133 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIK-------GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGD 133 (414)
T ss_dssp CSCCHHHHHHHHHHHT-------TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHhHHHhC-------CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhc
Confidence 3689999999998876 345899999999999986655555544 467999999999999999999888643
No 42
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.97 E-value=0.0016 Score=71.61 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHH-HHcC----CceEEecCChHHHHHHHHHHHHH
Q 048652 249 TLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSL-LRIK----CRTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 249 ~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~L-l~~~----~RILVcAPTN~AVDeVa~RL~~l 322 (1382)
.+.+.|.+++..... ....+|.||.|||||+++...+... ...+ .++++.+|+...+.++++++...
T Consensus 61 p~~~~q~~~i~~i~~-------g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~ 132 (235)
T 3llm_A 61 PVKKFESEILEAISQ-------NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFE 132 (235)
T ss_dssp GGGGGHHHHHHHHHH-------CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHhc-------CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHH
Confidence 577889999988766 6899999999999999886665543 3333 38999999999999999888764
No 43
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.96 E-value=0.0013 Score=76.96 Aligned_cols=68 Identities=16% Similarity=0.092 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc---CCceEEecCChHHHHHHHHHHHHHh
Q 048652 249 TLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI---KCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 249 ~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~---~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
.+++.|++|+...+. ..-.+|.+|+|+|||.+....+...+.. +.++|+++||..-+.++..++.+..
T Consensus 30 ~~~~~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 100 (391)
T 1xti_A 30 HPSEVQHECIPQAIL-------GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 100 (391)
T ss_dssp SCCHHHHHHHHHHTT-------TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhc-------CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHH
Confidence 599999999998876 3569999999999998765555555432 5699999999999999998888764
No 44
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.00049 Score=79.50 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHH
Q 048652 252 EPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLL 296 (1382)
Q Consensus 252 ~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll 296 (1382)
+.|...+...+......+.++..+|.||||||||+++..++..|-
T Consensus 26 e~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 26 VEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 357777777776655567788999999999999999987776654
No 45
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=96.93 E-value=0.0013 Score=77.65 Aligned_cols=68 Identities=22% Similarity=0.224 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCceEEecCChHHHHHHHHHHHHHh
Q 048652 249 TLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR---IKCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 249 ~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~---~~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
.+++.|++|+...+. ..-.+|++|+|||||.+....+...+. .+.++|+++||..-+.++.+++.+..
T Consensus 59 ~~~~~Q~~ai~~i~~-------~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIK-------GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALG 129 (410)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhC-------CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHh
Confidence 589999999999876 355999999999999887665555543 46899999999999999999888753
No 46
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.92 E-value=0.001 Score=85.12 Aligned_cols=83 Identities=25% Similarity=0.181 Sum_probs=75.7
Q ss_pred HHhHHHHHHHHHhcCCChhhhhHhhchhhHHhhhch----------HHHHhhHhhccChhHHHHHhhhcCchHHHhHHHH
Q 048652 936 KFNLQEAAEIFAAIGMPDSAVRCFNDLEKYERAGRF----------DELMMLEEGSGNFMEAANTAVLGGDIFLATDLLQ 1005 (1382)
Q Consensus 936 ~~~~~~aa~~fe~~~~~~~aa~c~~~~~~y~~a~~~----------~el~~~~~~~~~~~eaa~~~~~~g~~~~~~~~l~ 1005 (1382)
+....++|+.+.+-|+++.|++||..+|+|+++-.+ .+|+.+++..|.|.+|...+...||+.+|++||.
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHH
Confidence 567889999999999999999999999999988666 5667788999999999999999999999999999
Q ss_pred HhcCchhHHHHHH
Q 048652 1006 KAGNFREASKLVL 1018 (1382)
Q Consensus 1006 ~~~~~~~~~~~~~ 1018 (1382)
+.+.|++|..++-
T Consensus 761 ~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 761 KSQRFSEAAFLGS 773 (814)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHH
Confidence 9999999999883
No 47
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.90 E-value=0.0011 Score=84.94 Aligned_cols=67 Identities=28% Similarity=0.249 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHH-HHHHcCCceEEecCChHHHHHHHHHHH
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLF-SLLRIKCRTLACTPTNVAITELASRAL 320 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~-~Ll~~~~RILVcAPTN~AVDeVa~RL~ 320 (1382)
..|++.|.+|+..++.. +...+|.||+|+|||+++...+. .+...+.++++++|+...+.+++.++.
T Consensus 29 ~~l~~~Q~~~i~~~~~~------~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~ 96 (715)
T 2va8_A 29 KKLNPPQTEAVKKGLLE------GNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFK 96 (715)
T ss_dssp CBCCHHHHHHHHTTTTT------TCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHhcC------CCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHH
Confidence 37999999999975442 67899999999999999855554 444578999999999999999999983
No 48
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=96.90 E-value=0.0029 Score=77.17 Aligned_cols=71 Identities=11% Similarity=-0.032 Sum_probs=52.4
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcC--CceEEecCChHHHHHHHHHHHH
Q 048652 247 SSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIK--CRTLACTPTNVAITELASRALR 321 (1382)
Q Consensus 247 ~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~--~RILVcAPTN~AVDeVa~RL~~ 321 (1382)
...|.+.|++||...+.... ...-.++..|.|+|||-++..++..+...+ .++||++|+. .+.+..+.+.+
T Consensus 35 ~~~L~~~Q~~~v~~l~~~~~---~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~-l~~qw~~e~~~ 107 (500)
T 1z63_A 35 KANLRPYQIKGFSWMRFMNK---LGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS-VLKNWEEELSK 107 (500)
T ss_dssp SSCCCHHHHHHHHHHHHHHH---TTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST-THHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHhh---CCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHH-HHHHHHHHHHH
Confidence 45799999999976653211 134567889999999999988888887654 7899999966 45665555544
No 49
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=96.90 E-value=0.0024 Score=78.24 Aligned_cols=70 Identities=14% Similarity=0.096 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc-----CCceEEecCChHHHHHHHHHHHHH
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI-----KCRTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~-----~~RILVcAPTN~AVDeVa~RL~~l 322 (1382)
+.+.+-|.+|+..++. ..-.+|.+|+|+|||.+....+...+.. +.++|+++||..-+.++...+.+.
T Consensus 3 ~~~~~~Q~~~i~~~~~-------~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 75 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK-------GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRY 75 (555)
T ss_dssp CCCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhC-------CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 5789999999999876 4568999999999999987777777665 789999999999999999998887
Q ss_pred hh
Q 048652 323 VK 324 (1382)
Q Consensus 323 ~~ 324 (1382)
..
T Consensus 76 ~~ 77 (555)
T 3tbk_A 76 FE 77 (555)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 50
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=96.89 E-value=0.0013 Score=76.95 Aligned_cols=69 Identities=20% Similarity=0.205 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCceEEecCChHHHHHHHHHHHHHh
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR---IKCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~---~~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
..+++.|++|+...+. ..-.+|.+|+|||||.+....+...+. .+.++|+++||..-+.++.+++.+..
T Consensus 42 ~~~~~~Q~~~i~~i~~-------~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 113 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE-------GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA 113 (394)
T ss_dssp CSCCHHHHHHHHHHHH-------TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC-------CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 3799999999999887 356899999999999885544444443 36799999999999999999888754
No 51
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.88 E-value=0.0018 Score=76.26 Aligned_cols=72 Identities=18% Similarity=0.122 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc---CCceEEecCChHHHHHHHHHHHHHhh
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI---KCRTLACTPTNVAITELASRALRLVK 324 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~---~~RILVcAPTN~AVDeVa~RL~~l~~ 324 (1382)
..+++-|.+|+...+.. .+...+|.+|+|||||.+....+...+.. +.++|+++||...+.++..++.+...
T Consensus 46 ~~~~~~Q~~~i~~~~~~-----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 120 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE-----PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGK 120 (412)
T ss_dssp CSCCHHHHHHHHHHHSS-----SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcC-----CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHh
Confidence 47899999999988762 24689999999999998865444444332 35899999999999999998887643
No 52
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=96.83 E-value=0.0026 Score=78.16 Aligned_cols=72 Identities=11% Similarity=0.082 Sum_probs=59.7
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc-----CCceEEecCChHHHHHHHHHHHH
Q 048652 247 SSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI-----KCRTLACTPTNVAITELASRALR 321 (1382)
Q Consensus 247 ~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~-----~~RILVcAPTN~AVDeVa~RL~~ 321 (1382)
...+.+-|.+|+..++. ..-.+|.+|.|+|||.+....+..++.. +.++|+++||..-+.++..++.+
T Consensus 5 ~~~~~~~Q~~~i~~~~~-------~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 5 TKKARSYQIELAQPAIN-------GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp ---CCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc-------CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 45799999999999986 3568999999999999987777777665 78999999999999999999988
Q ss_pred Hhhh
Q 048652 322 LVKE 325 (1382)
Q Consensus 322 l~~e 325 (1382)
....
T Consensus 78 ~~~~ 81 (556)
T 4a2p_A 78 HFER 81 (556)
T ss_dssp HHGG
T ss_pred Hhcc
Confidence 7553
No 53
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=96.82 E-value=0.0023 Score=82.51 Aligned_cols=78 Identities=19% Similarity=0.163 Sum_probs=65.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHHhh
Q 048652 246 LSSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRLVK 324 (1382)
Q Consensus 246 ~~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l~~ 324 (1382)
..+.|++.|++|+...+..+.. +.+...+|+||.|||||.+....+...+..+.++++++||..-+.++..++.+...
T Consensus 365 lpf~lt~~Q~~ai~~I~~~l~~-~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~ 442 (780)
T 1gm5_A 365 LPFKLTNAQKRAHQEIRNDMIS-EKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFS 442 (780)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHS-SSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhhccc-cCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhh
Confidence 3458999999999998875432 22347899999999999998887777788899999999999999999999988653
No 54
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=96.81 E-value=0.0025 Score=76.06 Aligned_cols=67 Identities=24% Similarity=0.123 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH-cCCceEEecCChHHHHHHHHHHHHH
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR-IKCRTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~-~~~RILVcAPTN~AVDeVa~RL~~l 322 (1382)
..|.+.|.+++..++. . -.+|.+|+|+|||.++...+..++. .+.++|+++||..-+.+...++.+.
T Consensus 8 ~~l~~~Q~~~i~~~~~-------~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~ 75 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE-------T-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRL 75 (494)
T ss_dssp HCCCHHHHHHHHHGGG-------S-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhh-------C-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 4789999999998876 2 7899999999999999888777665 6889999999999999999998875
No 55
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=96.80 E-value=0.0021 Score=85.27 Aligned_cols=71 Identities=14% Similarity=0.051 Sum_probs=62.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHHh
Q 048652 246 LSSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 246 ~~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
..+.|++.|.+||...+. ....+|.||.|+|||.+....+..++..+.++|+++||...+.++..++.+..
T Consensus 36 ~~f~l~~~Q~~aI~~il~-------g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLEQ-------GDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CSSCCCHHHHHHHHHHHT-------TCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHc-------CCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 456899999999998876 57899999999999998777777778889999999999999999999998754
No 56
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.77 E-value=0.002 Score=77.99 Aligned_cols=65 Identities=23% Similarity=0.137 Sum_probs=55.1
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHH
Q 048652 247 SSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALR 321 (1382)
Q Consensus 247 ~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~ 321 (1382)
...|++.|.+|+...+. .+-.+|.||+|+|||.+....+..+ +.++|+++||..-+.+...++.+
T Consensus 91 ~~~l~~~Q~~ai~~i~~-------~~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV-------DKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp CCCBCHHHHHHHHHHTT-------TTEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGG
T ss_pred CCCcCHHHHHHHHHHHh-------cCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHh
Confidence 46899999999998876 3459999999999999976666554 88999999999999988888766
No 57
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0033 Score=83.44 Aligned_cols=71 Identities=20% Similarity=0.096 Sum_probs=62.1
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHHhh
Q 048652 247 SSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRLVK 324 (1382)
Q Consensus 247 ~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l~~ 324 (1382)
.+.|++.|.+|+...+. ....+|.+|.|+|||.+....+...+..+.++|+++||..-+.+...++.+...
T Consensus 84 ~f~L~~~Q~eai~~l~~-------g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDR-------GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp SSCCCHHHHHHHHHHHH-------TCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHc-------CCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhC
Confidence 46799999999998766 467999999999999998777777778899999999999999999999987653
No 58
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=96.71 E-value=0.0036 Score=73.91 Aligned_cols=70 Identities=16% Similarity=0.090 Sum_probs=55.1
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHH-HHHHHHHHcC--------------------CceEEec
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVS-MLLFSLLRIK--------------------CRTLACT 306 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~-~li~~Ll~~~--------------------~RILVcA 306 (1382)
..+++-|++|+...+. ..-.+|.+|+|||||.+.. .++..+...+ .++|+++
T Consensus 36 ~~~~~~Q~~~i~~i~~-------~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~ 108 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKE-------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLA 108 (417)
T ss_dssp CSCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEEC
T ss_pred CCCCHHHHHHHHHHcc-------CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEEC
Confidence 4789999999998765 4678999999999998643 3444444322 5799999
Q ss_pred CChHHHHHHHHHHHHHhh
Q 048652 307 PTNVAITELASRALRLVK 324 (1382)
Q Consensus 307 PTN~AVDeVa~RL~~l~~ 324 (1382)
||..-+.++.+++.+...
T Consensus 109 Pt~~L~~q~~~~~~~~~~ 126 (417)
T 2i4i_A 109 PTRELAVQIYEEARKFSY 126 (417)
T ss_dssp SSHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHhC
Confidence 999999999999887643
No 59
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.70 E-value=0.0011 Score=84.93 Aligned_cols=65 Identities=22% Similarity=0.099 Sum_probs=56.3
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHH
Q 048652 249 TLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRAL 320 (1382)
Q Consensus 249 ~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~ 320 (1382)
.|++.|.+++...+. +...+|.||+|+|||+++...+...+..+.++++++|+...+.+++.++.
T Consensus 25 ~l~~~Q~~~i~~i~~-------~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~ 89 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFS-------GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFK 89 (702)
T ss_dssp CCCCCCHHHHHHHTT-------CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhC-------CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHH
Confidence 789999999998543 57899999999999999866666666678999999999999999999883
No 60
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.67 E-value=0.0027 Score=68.78 Aligned_cols=55 Identities=16% Similarity=0.226 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCC
Q 048652 250 LNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPT 308 (1382)
Q Consensus 250 LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPT 308 (1382)
-|....+++...+.. ...+..+|+||||||||+++..+...+...+.++..+..+
T Consensus 35 ~~~~~~~~l~~~~~~----~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 35 GNDELIGALKSAASG----DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp CCHHHHHHHHHHHHT----CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 344555555554432 2467899999999999999999999888877777766543
No 61
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0029 Score=84.65 Aligned_cols=73 Identities=19% Similarity=0.100 Sum_probs=64.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHHhh
Q 048652 245 SLSSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRLVK 324 (1382)
Q Consensus 245 ~~~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l~~ 324 (1382)
...+.|++-|.+||...+. +...+|.||.|+|||.+....+...+..+.++|+++||...+.++..++.+...
T Consensus 180 ~~~f~ltp~Q~~AI~~i~~-------g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~ 252 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCIDR-------GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG 252 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHTT-------TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred hCCCCCCHHHHHHHHHHHc-------CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC
Confidence 3456899999999998754 567899999999999998888888888899999999999999999999988654
No 62
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=96.65 E-value=0.0013 Score=84.44 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHH-HHHHHHHHHcCCceEEecCChHHHHHHHHHHH
Q 048652 249 TLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTV-SMLLFSLLRIKCRTLACTPTNVAITELASRAL 320 (1382)
Q Consensus 249 ~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI-~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~ 320 (1382)
.|++.|.+|+..++.. +...+|.||.|+|||.++ ..++..+...+.++++++|+...+.+++.++.
T Consensus 23 ~l~~~Q~~~i~~~~~~------~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~ 89 (720)
T 2zj8_A 23 SFYPPQAEALKSGILE------GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQ 89 (720)
T ss_dssp BCCHHHHHHHTTTGGG------TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTG
T ss_pred CCCHHHHHHHHHHhcC------CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHH
Confidence 7999999999974442 578999999999999988 44444555578999999999999999999984
No 63
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=96.60 E-value=0.022 Score=72.14 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHhhcccC--CCCCeEEEEcCCCCchHHHHHHHHHHHHHcC-------CceEEecCChHHHHHHHHH
Q 048652 248 STLNEPQVGAVFACLRRLDCD--HKSGVELRWGPPGTGKTKTVSMLLFSLLRIK-------CRTLACTPTNVAITELASR 318 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~--~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~-------~RILVcAPTN~AVDeVa~R 318 (1382)
..|-+.|++||...+...... .+..-.++.-+.|+|||-++.+++..++..+ .++||++|+ ..+.+-...
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 368899999999877543211 2234578888999999999999999998753 469999997 456665555
Q ss_pred HHHH
Q 048652 319 ALRL 322 (1382)
Q Consensus 319 L~~l 322 (1382)
+.+.
T Consensus 133 ~~~~ 136 (644)
T 1z3i_X 133 VGKW 136 (644)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 64
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.58 E-value=0.0037 Score=71.94 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCC
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPT 308 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPT 308 (1382)
.....+|+||||||||+++.++...+...+.+++.+...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 346899999999999999999999888877787777543
No 65
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.53 E-value=0.0038 Score=64.63 Aligned_cols=42 Identities=24% Similarity=0.400 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 048652 252 EPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR 297 (1382)
Q Consensus 252 ~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~ 297 (1382)
+.+.+.+...+.. ......+|.||||||||+++..+...+..
T Consensus 28 ~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 28 DEEIRRTIQVLQR----RTKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp HHHHHHHHHHHTS----SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhc----CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4455555555542 33567899999999999999998888765
No 66
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=96.49 E-value=0.005 Score=76.30 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=56.9
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHH-Hc------CCceEEecCChHHHHHHHHHHH
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLL-RI------KCRTLACTPTNVAITELASRAL 320 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll-~~------~~RILVcAPTN~AVDeVa~RL~ 320 (1382)
..+++-|.+||..++.. ...-.+|++|.|||||.+....+...+ .. +.++|+++||..-+.++..++.
T Consensus 93 ~~~~~~Q~~~i~~~l~~-----~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~ 167 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILSS-----EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVK 167 (563)
T ss_dssp SSCCHHHHHHHHHHHSS-----SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcC-----CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHH
Confidence 36999999999988841 246899999999999987555444444 32 2489999999999999999998
Q ss_pred HHhh
Q 048652 321 RLVK 324 (1382)
Q Consensus 321 ~l~~ 324 (1382)
+...
T Consensus 168 ~~~~ 171 (563)
T 3i5x_A 168 KIHD 171 (563)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8654
No 67
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.47 E-value=0.0035 Score=72.07 Aligned_cols=54 Identities=17% Similarity=0.122 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhcccC--CCCCeEEEEcCCCCchHHHHHHHHHHHH-HcCCceEEec
Q 048652 253 PQVGAVFACLRRLDCD--HKSGVELRWGPPGTGKTKTVSMLLFSLL-RIKCRTLACT 306 (1382)
Q Consensus 253 sQ~~AV~~~l~~~~~~--~~~~~~LI~GPPGTGKTttI~~li~~Ll-~~~~RILVcA 306 (1382)
++..++..+..-+... ......+|+||||||||+++.++...+. ..+.+++.+.
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 132 SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4555555443322211 1246899999999999999999999999 8888877654
No 68
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=96.44 E-value=0.0018 Score=79.49 Aligned_cols=70 Identities=16% Similarity=0.149 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc---CCceEEecCChHHHHHHHHHHHHHh
Q 048652 249 TLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI---KCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 249 ~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~---~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
.+++.|.+|+...+.. .....+|.||.|||||.+....+...+.. +.++|+++|++.-+.++.+++.+..
T Consensus 141 ~p~~~Q~~ai~~i~~~-----~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~ 213 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN-----PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMG 213 (508)
T ss_dssp ECCCTTSSSHHHHHCS-----SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHcC-----CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhC
Confidence 5889999999988762 24789999999999999866555555543 4599999999999999999988753
No 69
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=96.43 E-value=0.0027 Score=80.78 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=59.8
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcC------CceEEecCChHHHHHH-HHHH
Q 048652 247 SSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIK------CRTLACTPTNVAITEL-ASRA 319 (1382)
Q Consensus 247 ~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~------~RILVcAPTN~AVDeV-a~RL 319 (1382)
...|.+.|.+|+..++. ..-.+|.+|.|+|||.+....+..++..+ .++||++||..-+.+. ..++
T Consensus 5 ~~~l~~~Q~~~i~~il~-------g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l 77 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALE-------GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEF 77 (699)
T ss_dssp --CCCHHHHHHHHHHHS-------SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTH
T ss_pred CCCccHHHHHHHHHHHh-------CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 46899999999999987 35699999999999999888887776543 8999999999999999 8888
Q ss_pred HHHhh
Q 048652 320 LRLVK 324 (1382)
Q Consensus 320 ~~l~~ 324 (1382)
.+...
T Consensus 78 ~~~~~ 82 (699)
T 4gl2_A 78 QPFLK 82 (699)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 88654
No 70
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.42 E-value=0.0043 Score=75.30 Aligned_cols=72 Identities=18% Similarity=0.122 Sum_probs=55.8
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc---CCceEEecCChHHHHHHHHHHHHHhh
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI---KCRTLACTPTNVAITELASRALRLVK 324 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~---~~RILVcAPTN~AVDeVa~RL~~l~~ 324 (1382)
..+++-|.+|+...+. +.+...+++||.|||||.+....+...+.. +.++|+++||..-+.++..++.++..
T Consensus 113 ~~p~~~Q~~ai~~il~-----~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~ 187 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA-----EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGK 187 (479)
T ss_dssp CSCCHHHHHHHHHHTS-----BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc-----CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHh
Confidence 4688889999998876 234789999999999998854444333333 34899999999999999988877643
No 71
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=96.42 E-value=0.0056 Score=76.37 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc-------CCceEEecCChHHHHHHHHHHH
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI-------KCRTLACTPTNVAITELASRAL 320 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~-------~~RILVcAPTN~AVDeVa~RL~ 320 (1382)
..+++-|.+||..++.. ...-.+|++|.|||||.+....+...+.. +.++|+++||..-+.++..++.
T Consensus 42 ~~~~~~Q~~~i~~il~~-----~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~ 116 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILSS-----EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVK 116 (579)
T ss_dssp SSCCHHHHHHHHHHHCS-----SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcc-----CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHH
Confidence 36999999999998841 24688999999999998755544444432 3589999999999999999998
Q ss_pred HHhh
Q 048652 321 RLVK 324 (1382)
Q Consensus 321 ~l~~ 324 (1382)
+...
T Consensus 117 ~~~~ 120 (579)
T 3sqw_A 117 KIHD 120 (579)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8754
No 72
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.42 E-value=0.0034 Score=78.41 Aligned_cols=68 Identities=21% Similarity=0.090 Sum_probs=47.3
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc---------CCceEEecCChHHHHHHH
Q 048652 247 SSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI---------KCRTLACTPTNVAITELA 316 (1382)
Q Consensus 247 ~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~---------~~RILVcAPTN~AVDeVa 316 (1382)
...|.+.|.+||..++..+... ..-.+|++|+|||||.++..++..++.. +.++|+++||+.-+++..
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~--~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~ 252 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQG--KKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPK 252 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTT--CSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC---------
T ss_pred CCCchHHHHHHHHHHHHHHhcC--CCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHH
Confidence 3579999999999998755332 3557899999999999998888888874 489999999997666654
No 73
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.40 E-value=0.0057 Score=69.93 Aligned_cols=71 Identities=17% Similarity=0.081 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHH-HHHHHHHHc--CCceEEecCChHHHHHHHHHHHHHh
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVS-MLLFSLLRI--KCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~-~li~~Ll~~--~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
..+++-|.+|+...+. +.+.-.++++|.|||||.+.. .++..+... +.++|+++||..-+.++...+..+.
T Consensus 113 ~~pt~iQ~~ai~~il~-----~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~ 186 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA-----EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMG 186 (300)
T ss_dssp CSCCHHHHHHHHHHTS-----SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc-----CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHH
Confidence 4688999999988875 123679999999999998753 333333332 4589999999999999988887754
No 74
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=96.38 E-value=0.0044 Score=82.95 Aligned_cols=69 Identities=20% Similarity=0.103 Sum_probs=60.1
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHH
Q 048652 247 SSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 247 ~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l 322 (1382)
.+.+++-|.+|+...+. ..-.+|++|.|||||......+..++..+.++|+++||..-+.++..++.++
T Consensus 76 gf~pt~iQ~~ai~~il~-------g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQ-------GKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp SSCCCHHHHHHHHHHTT-------TCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHc-------CCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHh
Confidence 34799999999999876 4568999999999999776666777778999999999999999999999884
No 75
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.33 E-value=0.0074 Score=81.19 Aligned_cols=76 Identities=17% Similarity=0.061 Sum_probs=62.9
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHHh
Q 048652 247 SSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 247 ~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
.+.+++.|.+||...+..+.. +.+.-.+|+||.|+|||.+....+..++..+.++|+++||..-+.+...++.+..
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~-g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~ 676 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQ-PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRF 676 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHS-SSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHhc-CCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHh
Confidence 457899999999999875432 2234789999999999998876666677788999999999999999999988754
No 76
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.31 E-value=0.0043 Score=64.16 Aligned_cols=42 Identities=24% Similarity=0.431 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 048652 252 EPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR 297 (1382)
Q Consensus 252 ~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~ 297 (1382)
+.+.+.+...+.. ...+..+|+||||||||+++..+...+..
T Consensus 28 ~~~~~~l~~~l~~----~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 28 DTEIRRAIQILSR----RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp HHHHHHHHHHHTS----SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhC----CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3344455554432 33567899999999999999998888765
No 77
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.31 E-value=0.0047 Score=70.89 Aligned_cols=79 Identities=18% Similarity=0.219 Sum_probs=49.8
Q ss_pred CCccccCCCCCCC--CCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHH
Q 048652 237 IWDEKFGPSLSST--LNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITE 314 (1382)
Q Consensus 237 ~~~~~~~~~~~~~--LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDe 314 (1382)
.|.+.++|....+ -++...+.+...+.. ...+++.|+.||||||||+++.++...+ +..++-+..++..++.
T Consensus 15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~---~~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~~~~ 88 (324)
T 3u61_B 15 ILEQKYRPSTIDECILPAFDKETFKSITSK---GKIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCKIDF 88 (324)
T ss_dssp SHHHHSCCCSTTTSCCCHHHHHHHHHHHHT---TCCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCCHHH
T ss_pred hHHHhhCCCCHHHHhCcHHHHHHHHHHHHc---CCCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccCHHH
Confidence 4555555443333 445556666666552 3345677888889999999998886655 5667766666555665
Q ss_pred HHHHHHH
Q 048652 315 LASRALR 321 (1382)
Q Consensus 315 Va~RL~~ 321 (1382)
+...+..
T Consensus 89 i~~~~~~ 95 (324)
T 3u61_B 89 VRGPLTN 95 (324)
T ss_dssp HHTHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 78
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.27 E-value=0.0065 Score=71.03 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc
Q 048652 251 NEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI 298 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~ 298 (1382)
.+.+.+.+...+........++..+|+||||||||+++..+...+...
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 456666777666654344556789999999999999999988887654
No 79
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=96.27 E-value=0.0089 Score=77.55 Aligned_cols=72 Identities=11% Similarity=0.082 Sum_probs=60.6
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc-----CCceEEecCChHHHHHHHHHHHH
Q 048652 247 SSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI-----KCRTLACTPTNVAITELASRALR 321 (1382)
Q Consensus 247 ~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~-----~~RILVcAPTN~AVDeVa~RL~~ 321 (1382)
...+.+-|.+|+..++. ..-.+|.+|.|+|||.+....+..++.. +.++|+++||..-+.++..++.+
T Consensus 246 ~~~l~~~Q~~~i~~~l~-------~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 246 TKKARSYQIELAQPAIN-------GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp --CCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh-------CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 45799999999999876 3568999999999999987777777765 78999999999999999999988
Q ss_pred Hhhh
Q 048652 322 LVKE 325 (1382)
Q Consensus 322 l~~e 325 (1382)
....
T Consensus 319 ~~~~ 322 (797)
T 4a2q_A 319 HFER 322 (797)
T ss_dssp HHGG
T ss_pred hccc
Confidence 7543
No 80
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=96.26 E-value=0.0091 Score=71.72 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHH-HHHHHHHc-------CCceEEecCChHHHHHHHHHHH
Q 048652 249 TLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSM-LLFSLLRI-------KCRTLACTPTNVAITELASRAL 320 (1382)
Q Consensus 249 ~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~-li~~Ll~~-------~~RILVcAPTN~AVDeVa~RL~ 320 (1382)
.+++-|++|+...++ ..-.++++|.|||||..... ++..++.. +.++|+++||..-+.++.+++.
T Consensus 78 ~pt~iQ~~ai~~i~~-------g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~ 150 (434)
T 2db3_A 78 IPTPIQKCSIPVISS-------GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEAR 150 (434)
T ss_dssp SCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc-------CCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHH
Confidence 689999999998876 46799999999999986543 44455543 4589999999999999999888
Q ss_pred HHh
Q 048652 321 RLV 323 (1382)
Q Consensus 321 ~l~ 323 (1382)
+..
T Consensus 151 ~~~ 153 (434)
T 2db3_A 151 KFA 153 (434)
T ss_dssp HHT
T ss_pred HHh
Confidence 764
No 81
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.19 E-value=0.0069 Score=78.24 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHH-Hc--CCceEEecCChHHHHHHHHHHHHH
Q 048652 251 NEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLL-RI--KCRTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll-~~--~~RILVcAPTN~AVDeVa~RL~~l 322 (1382)
...|+.+|..++.. ....+|.||+|+|||+.+..++.... .. +.++++++|+..++.+++.++...
T Consensus 95 ~~~q~~~i~~~l~~------~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~ 163 (773)
T 2xau_A 95 VHAQRDEFLKLYQN------NQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEE 163 (773)
T ss_dssp GGGGHHHHHHHHHH------CSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC------CCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHH
Confidence 34688899999874 67999999999999997665543322 12 567999999999999999888664
No 82
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.13 E-value=0.0067 Score=70.70 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc
Q 048652 251 NEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI 298 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~ 298 (1382)
.+.+.+.+...+.........+..+|+||||||||+++..+...+...
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~ 71 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEAR 71 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 456777777776544334557789999999999999999988887654
No 83
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=96.11 E-value=0.011 Score=75.22 Aligned_cols=71 Identities=11% Similarity=0.060 Sum_probs=58.3
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcC-----CceEEecCChHHHHHHHHHHHH
Q 048652 247 SSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIK-----CRTLACTPTNVAITELASRALR 321 (1382)
Q Consensus 247 ~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~-----~RILVcAPTN~AVDeVa~RL~~ 321 (1382)
...+.+-|.+++..++. ....+|.+|.|+|||......+...+..+ .++|+++||..-+.+..+.+.+
T Consensus 11 ~~~lr~~Q~~~i~~~l~-------g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 11 PFKPRNYQLELALPAMK-------GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp --CCCHHHHHHHHHHHT-------TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHc-------CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 45799999999999876 46799999999999998877776665442 7999999999999999988887
Q ss_pred Hhh
Q 048652 322 LVK 324 (1382)
Q Consensus 322 l~~ 324 (1382)
...
T Consensus 84 ~~~ 86 (696)
T 2ykg_A 84 YFE 86 (696)
T ss_dssp HTT
T ss_pred Hhc
Confidence 653
No 84
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.07 E-value=0.0066 Score=64.39 Aligned_cols=45 Identities=29% Similarity=0.335 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcC
Q 048652 251 NEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIK 299 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~ 299 (1382)
.+.+.+.+...+.. ...+..+|.||||||||+++..+...+...+
T Consensus 22 ~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~ 66 (226)
T 2chg_A 22 QDEVIQRLKGYVER----KNIPHLLFSGPPGTGKTATAIALARDLFGEN 66 (226)
T ss_dssp CHHHHHHHHHHHHT----TCCCCEEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHhC----CCCCeEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 34556666666653 2334599999999999999998888876553
No 85
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.05 E-value=0.0049 Score=65.42 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=34.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCC
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPT 308 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPT 308 (1382)
..+.+|.||||+||||++..++..+...+.++++..|.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 46899999999999999999999988889999998877
No 86
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.03 E-value=0.0071 Score=68.88 Aligned_cols=57 Identities=28% Similarity=0.366 Sum_probs=37.1
Q ss_pred CccccCCCCCCCC--CHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc
Q 048652 238 WDEKFGPSLSSTL--NEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI 298 (1382)
Q Consensus 238 ~~~~~~~~~~~~L--N~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~ 298 (1382)
|.+.+.|....++ .+...+.+...+.. +..+..+|+||||||||+++..+...+...
T Consensus 15 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~la~~l~~~l~~~ 73 (327)
T 1iqp_A 15 WVEKYRPQRLDDIVGQEHIVKRLKHYVKT----GSMPHLLFAGPPGVGKTTAALALARELFGE 73 (327)
T ss_dssp HHHHTCCCSTTTCCSCHHHHHHHHHHHHH----TCCCEEEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred hhhccCCCCHHHhhCCHHHHHHHHHHHHc----CCCCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence 4444444333333 45555566655553 334569999999999999999888877543
No 87
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.98 E-value=0.0079 Score=65.63 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=40.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRAL 320 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~ 320 (1382)
..+.+|.||||+|||+++..++..++..+.+++.++.... ..++..|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~ 71 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMA 71 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHH
Confidence 6799999999999999999999999888889988876553 456666654
No 88
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.98 E-value=0.0094 Score=67.68 Aligned_cols=39 Identities=26% Similarity=0.183 Sum_probs=29.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCC----ceEEecCC
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKC----RTLACTPT 308 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~----RILVcAPT 308 (1382)
.....+|+||||||||+++.++...+-..+. .++.+.++
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 3457999999999999999988888866432 56665543
No 89
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.94 E-value=0.01 Score=69.35 Aligned_cols=55 Identities=24% Similarity=0.128 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHhhcccCCCCC--eEEEEcCCCCchHHHHHHHHHHHHHc-CCceEEe
Q 048652 251 NEPQVGAVFACLRRLDCDHKSG--VELRWGPPGTGKTKTVSMLLFSLLRI-KCRTLAC 305 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~~~~~~~~~--~~LI~GPPGTGKTttI~~li~~Ll~~-~~RILVc 305 (1382)
.+.+.+.+...+........+. ..+|.||||||||+++..+...+... +..++.+
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i 79 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYI 79 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEE
Confidence 4566667776666432223334 89999999999999999888777655 4555543
No 90
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.90 E-value=0.0055 Score=71.08 Aligned_cols=60 Identities=25% Similarity=0.294 Sum_probs=35.8
Q ss_pred CccccCCCCCCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc
Q 048652 238 WDEKFGPSLSSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI 298 (1382)
Q Consensus 238 ~~~~~~~~~~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~ 298 (1382)
|.++++|....++-. |..++......+...++.+..+|.|||||||||++..+...+...
T Consensus 4 w~~kyrP~~~~~~vg-~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~ 63 (354)
T 1sxj_E 4 WVDKYRPKSLNALSH-NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 63 (354)
T ss_dssp CTTTTCCCSGGGCCS-CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCT
T ss_pred chhccCCCCHHHhcC-CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 555565554444432 333333332222133444559999999999999998887766543
No 91
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.90 E-value=0.0078 Score=72.66 Aligned_cols=54 Identities=19% Similarity=0.119 Sum_probs=36.7
Q ss_pred HHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc--CCceEEecCC
Q 048652 255 VGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI--KCRTLACTPT 308 (1382)
Q Consensus 255 ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~--~~RILVcAPT 308 (1382)
..|...+..........+..+|+||||||||+++.++...+... +.+++.+...
T Consensus 114 ~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 114 SFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp HHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred HHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 33444443332222225689999999999999999998888766 6677665543
No 92
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.89 E-value=0.0082 Score=66.31 Aligned_cols=45 Identities=22% Similarity=0.180 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHhhcccC--------CCCCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 251 NEPQVGAVFACLRRLDCD--------HKSGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~~~~~--------~~~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
.+.+++.+...+..+... ..+...+|+||||||||+++.++...+
T Consensus 11 ~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 11 MHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345666666554432111 234568999999999999998876654
No 93
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.88 E-value=0.0058 Score=68.65 Aligned_cols=45 Identities=24% Similarity=0.171 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHhhccc---------CCCCCeEEEEcCCCCchHHHHHHHHHH
Q 048652 250 LNEPQVGAVFACLRRLDC---------DHKSGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 250 LN~sQ~~AV~~~l~~~~~---------~~~~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
-.+.+.+.+...+..... -..+...+|+||||||||+++.++...
T Consensus 21 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 21 GLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 456677777766543100 123567999999999999999877554
No 94
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.84 E-value=0.0063 Score=70.60 Aligned_cols=59 Identities=29% Similarity=0.438 Sum_probs=36.0
Q ss_pred CCccccCCCCCCCC--CHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcC
Q 048652 237 IWDEKFGPSLSSTL--NEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIK 299 (1382)
Q Consensus 237 ~~~~~~~~~~~~~L--N~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~ 299 (1382)
.|.+.++|...... ++...+.+...+. .+..+..+++|||||||||++..+...+....
T Consensus 14 ~~~~k~rp~~~~~~~g~~~~~~~L~~~i~----~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 14 PWVEKYRPETLDEVYGQNEVITTVRKFVD----EGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp CHHHHTCCSSGGGCCSCHHHHHHHHHHHH----TTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred chHHHhCCCcHHHhcCcHHHHHHHHHHHh----cCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 35555544433332 2333334444443 23334599999999999999999888876543
No 95
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.83 E-value=0.0039 Score=67.37 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
...+|.||||||||+++.+++..+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999998887765
No 96
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.81 E-value=0.0067 Score=66.56 Aligned_cols=40 Identities=25% Similarity=0.203 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCCh
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTN 309 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN 309 (1382)
...+.+|.||||+||||.+..++..+...+.++++..|.-
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 4679999999999999999999999999999999997743
No 97
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=95.79 E-value=0.013 Score=77.24 Aligned_cols=71 Identities=11% Similarity=0.081 Sum_probs=59.3
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc-----CCceEEecCChHHHHHHHHHHHH
Q 048652 247 SSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI-----KCRTLACTPTNVAITELASRALR 321 (1382)
Q Consensus 247 ~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~-----~~RILVcAPTN~AVDeVa~RL~~ 321 (1382)
...+.+-|.+|+..++. ..-.+|++|.|+|||.+....+..++.. +.++|+++||..-+.+...++.+
T Consensus 246 ~~~~r~~Q~~ai~~il~-------g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN-------GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp --CCCHHHHHHHHHHHT-------TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc-------CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 45799999999999876 3568999999999999877777666655 78999999999999999999888
Q ss_pred Hhh
Q 048652 322 LVK 324 (1382)
Q Consensus 322 l~~ 324 (1382)
...
T Consensus 319 ~~~ 321 (936)
T 4a2w_A 319 HFE 321 (936)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 98
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.78 E-value=0.0053 Score=62.24 Aligned_cols=30 Identities=20% Similarity=0.197 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcC
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIK 299 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~ 299 (1382)
.....+|+||||||||+++.++.......+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~ 52 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQ 52 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccC
Confidence 356789999999999999877655443333
No 99
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.036 Score=71.94 Aligned_cols=72 Identities=13% Similarity=0.060 Sum_probs=53.9
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc---CCceEEecCChHHHHHHHHHHHHH
Q 048652 247 SSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI---KCRTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 247 ~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~---~~RILVcAPTN~AVDeVa~RL~~l 322 (1382)
...|-+.|.++|...+.... +..-.++.-|.|+|||-++.+++..++.. +.++||++|+. -+.+-...+.+.
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~---~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~s-ll~qW~~E~~~~ 308 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWS---KGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLS-TMPAWLDTFEKW 308 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHT---TTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTT-THHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhh---cCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECch-HHHHHHHHHHHH
Confidence 45799999999987764321 24567899999999999998888887643 56899999955 466666665543
No 100
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.74 E-value=0.012 Score=68.13 Aligned_cols=47 Identities=15% Similarity=-0.010 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc
Q 048652 252 EPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI 298 (1382)
Q Consensus 252 ~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~ 298 (1382)
+.|.+++......+..+.-++..|+.||||||||+++..+...+...
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 44555555444444333445579999999999999999999988754
No 101
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.73 E-value=0.007 Score=68.46 Aligned_cols=25 Identities=32% Similarity=0.310 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+...+|+||||||||+++..+...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999998887766
No 102
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=95.71 E-value=0.014 Score=78.06 Aligned_cols=69 Identities=19% Similarity=0.078 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHHhhh
Q 048652 249 TLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRLVKE 325 (1382)
Q Consensus 249 ~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l~~e 325 (1382)
.+ +-|.+|+..++. ....+|+||.|||||.....++..+...+.++|+++||..-+.++.+++.+....
T Consensus 57 ~p-~iQ~~ai~~il~-------g~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~ 125 (1054)
T 1gku_B 57 PR-AIQKMWAKRILR-------KESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEK 125 (1054)
T ss_dssp CC-HHHHHHHHHHHT-------TCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred CH-HHHHHHHHHHHh-------CCCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 37 999999999886 4679999999999998666666666677899999999999999999999887643
No 103
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.71 E-value=0.0086 Score=67.93 Aligned_cols=30 Identities=40% Similarity=0.401 Sum_probs=24.2
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHHHHc
Q 048652 269 HKSGVELRWGPPGTGKTKTVSMLLFSLLRI 298 (1382)
Q Consensus 269 ~~~~~~LI~GPPGTGKTttI~~li~~Ll~~ 298 (1382)
+..+..+|+||||||||+++..+...+...
T Consensus 36 ~~~~~~ll~G~~G~GKt~la~~l~~~l~~~ 65 (319)
T 2chq_A 36 KNIPHLLFSGPPGTGKTATAIALARDLFGE 65 (319)
T ss_dssp TCCCCEEEESSSSSSHHHHHHHHHHHHHTT
T ss_pred CCCCeEEEECcCCcCHHHHHHHHHHHhcCC
Confidence 334459999999999999999888877543
No 104
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.70 E-value=0.019 Score=72.29 Aligned_cols=73 Identities=22% Similarity=0.049 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHH-HHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHHhh
Q 048652 249 TLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKT-VSMLLFSLLRIKCRTLACTPTNVAITELASRALRLVK 324 (1382)
Q Consensus 249 ~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTtt-I~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l~~ 324 (1382)
..-+.|++.+.....++.. ....++++|.|||||-. +...+..+...+.+|+++|||+.-..++.+-+..+..
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~---~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~ 76 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQK---SYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSS 76 (620)
T ss_dssp --CHHHHHHHHHHHHHHHH---SSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHc---CCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhh
Confidence 3457888877755544322 67899999999999965 3445555556689999999999999988877766544
No 105
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.69 E-value=0.011 Score=71.11 Aligned_cols=37 Identities=27% Similarity=0.246 Sum_probs=33.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
.+.+.+|.||||+|||||+..++.++...+.+|++++
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3568999999999999999999999999999987655
No 106
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.67 E-value=0.0068 Score=76.11 Aligned_cols=60 Identities=18% Similarity=0.209 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHH
Q 048652 249 TLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELA 316 (1382)
Q Consensus 249 ~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa 316 (1382)
.++..|.+|+...+... .++.+|.|++|+|||+++...++.+. .+++|||||..|+..+.
T Consensus 175 ~~T~dQ~~al~~~~~~~-----~~~~vlta~RGRGKSa~lG~~~a~~~---~~~~vtAP~~~a~~~l~ 234 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMP-----PGVAAVTAARGRGKSALAGQLISRIA---GRAIVTAPAKASTDVLA 234 (671)
T ss_dssp SCCHHHHHHHHHHTTCC-----SEEEEEEECTTSSHHHHHHHHHHHSS---SCEEEECSSCCSCHHHH
T ss_pred CCCHHHHHHHHHHHHhh-----hCeEEEecCCCCCHHHHHHHHHHHHH---hCcEEECCCHHHHHHHH
Confidence 68999999999887742 47889999999999998888888775 35799999999998543
No 107
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.67 E-value=0.0057 Score=69.68 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=25.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
+...|++||||||||+++.++...+ +..++.+.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~ 68 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM---GINPIMMS 68 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEe
Confidence 4578899999999999998887776 55555544
No 108
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.66 E-value=0.0077 Score=64.59 Aligned_cols=43 Identities=26% Similarity=0.183 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHH
Q 048652 251 NEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLL 296 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll 296 (1382)
.+.+.+.+...+.. ...++..+|.||||||||+++..+...+.
T Consensus 28 ~~~~~~~l~~~l~~---~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 28 QEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CHHHHHHHHHHHHH---TCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHc---CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44555666666653 22235899999999999999877665543
No 109
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=95.64 E-value=0.0078 Score=73.01 Aligned_cols=50 Identities=24% Similarity=0.337 Sum_probs=43.9
Q ss_pred CCeEEEEcCCCCchHHH-HHHHHHHHHHcCCceEEecCChHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKT-VSMLLFSLLRIKCRTLACTPTNVAITELASRAL 320 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTtt-I~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~ 320 (1382)
....+|.||+|||||.. +..++..++..+.++|+++||...+.++.+++.
T Consensus 21 ~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 21 RQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp TCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc
Confidence 67899999999999998 567777777789999999999999999888764
No 110
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.62 E-value=0.0076 Score=74.22 Aligned_cols=71 Identities=21% Similarity=0.343 Sum_probs=46.3
Q ss_pred CCCCccccCCCCCCC--CCHHHHHHHHHHHhhcccC-------------CCCCeEEEEcCCCCchHHHHHHHHHHHHHcC
Q 048652 235 KGIWDEKFGPSLSST--LNEPQVGAVFACLRRLDCD-------------HKSGVELRWGPPGTGKTKTVSMLLFSLLRIK 299 (1382)
Q Consensus 235 ~~~~~~~~~~~~~~~--LN~sQ~~AV~~~l~~~~~~-------------~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~ 299 (1382)
...|.+++.|....+ -++.+.+.+...+...... ......||.||||||||+++.++...+ +
T Consensus 26 ~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~ 102 (516)
T 1sxj_A 26 DKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---G 102 (516)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---T
T ss_pred CCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---C
Confidence 345666666554333 3567777777776542100 134689999999999999998887766 6
Q ss_pred CceEEecCC
Q 048652 300 CRTLACTPT 308 (1382)
Q Consensus 300 ~RILVcAPT 308 (1382)
..++.+..+
T Consensus 103 ~~~i~in~s 111 (516)
T 1sxj_A 103 YDILEQNAS 111 (516)
T ss_dssp CEEEEECTT
T ss_pred CCEEEEeCC
Confidence 666655443
No 111
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.62 E-value=0.01 Score=69.06 Aligned_cols=46 Identities=24% Similarity=0.146 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHhhcccCC-CCCeEEEEcCCCCchHHHHHHHHHHHH
Q 048652 251 NEPQVGAVFACLRRLDCDH-KSGVELRWGPPGTGKTKTVSMLLFSLL 296 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~~~~~~-~~~~~LI~GPPGTGKTttI~~li~~Ll 296 (1382)
.+.+++++...+..+.... .+...||.||||||||+++.++...+-
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3455555544444332222 235899999999999999988777664
No 112
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.58 E-value=0.012 Score=68.52 Aligned_cols=55 Identities=27% Similarity=0.337 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc---CCceEEe
Q 048652 251 NEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI---KCRTLAC 305 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~---~~RILVc 305 (1382)
-+.+.+.+...+............+|.||||||||+++..+...+... +..++.+
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i 82 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYI 82 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 355666776666543334556799999999999999999888777654 4444433
No 113
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.49 E-value=0.01 Score=71.38 Aligned_cols=49 Identities=27% Similarity=0.353 Sum_probs=41.5
Q ss_pred CCeEEEEcCCCCchHHHH-HHHHHHHHHcCCceEEecCChHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTV-SMLLFSLLRIKCRTLACTPTNVAITELASRA 319 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI-~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL 319 (1382)
....+|+||+|||||.+. ..++..++..+.++|+++||..-+.++...+
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~ 51 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEAL 51 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHh
Confidence 468999999999999996 5566577788899999999999888877654
No 114
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.46 E-value=0.021 Score=65.50 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=46.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHH---cCCceEEecCC--hHHHHHHHHHHHHHhhhhhcCCCCccccccCCcceE
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLR---IKCRTLACTPT--NVAITELASRALRLVKESYKRDSRNNTPFCPLGDIL 344 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~---~~~RILVcAPT--N~AVDeVa~RL~~l~~es~~~~~~~~~~~~~lgdIV 344 (1382)
+.+..|++||||||||+++..+...... ....++...++ +.-|+++.+ +.+.... .+..+-..|+
T Consensus 17 ~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~-li~~~~~---------~p~~~~~kvv 86 (305)
T 2gno_A 17 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRT-IKDFLNY---------SPELYTRKYV 86 (305)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHH-HHHHHTS---------CCSSSSSEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHH-HHHHHhh---------ccccCCceEE
Confidence 3679999999999999999888775321 13467777775 567777765 3332221 1122223577
Q ss_pred EeccCCCC
Q 048652 345 LFGNKDRL 352 (1382)
Q Consensus 345 r~Gn~~rm 352 (1382)
.+-+.++|
T Consensus 87 iIdead~l 94 (305)
T 2gno_A 87 IVHDCERM 94 (305)
T ss_dssp EETTGGGB
T ss_pred EeccHHHh
Confidence 77776665
No 115
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=95.46 E-value=0.024 Score=75.07 Aligned_cols=69 Identities=25% Similarity=0.226 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCC--ceEEecCChHHHHHHHHHHHH
Q 048652 247 SSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKC--RTLACTPTNVAITELASRALR 321 (1382)
Q Consensus 247 ~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~--RILVcAPTN~AVDeVa~RL~~ 321 (1382)
...|.+.|.+||..++.. ..+-.+|.+|.|+|||-++..++..++..+. ++|+++|+ ..+.+-...+.+
T Consensus 151 ~~~LrpyQ~eav~~~l~~-----~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRR-----HAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp SSCCCHHHHHHHHHHHHS-----SSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHh-----cCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHH
Confidence 468999999999998873 2457899999999999999999999988765 99999999 667777766655
No 116
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.45 E-value=0.017 Score=65.64 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=26.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
+..+++||||||||+++..+...+...+..++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 4799999999999999988888776655555443
No 117
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=95.44 E-value=0.021 Score=70.65 Aligned_cols=68 Identities=21% Similarity=0.212 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHH
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALR 321 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~ 321 (1382)
+.+.+.|.+++.....++. .....+|+.|+|||||-+ .++.. +..+.++++++||+.-++++...+..
T Consensus 6 ~~~r~~Q~~~~~~v~~~~~---~~~~~~~~a~TGtGKT~~--~l~~~-~~~~~~~~~~~~t~~l~~q~~~~~~~ 73 (540)
T 2vl7_A 6 LQLRQWQAEKLGEAINALK---HGKTLLLNAKPGLGKTVF--VEVLG-MQLKKKVLIFTRTHSQLDSIYKNAKL 73 (540)
T ss_dssp ---CCHHHHHHHHHHHHHH---TTCEEEEECCTTSCHHHH--HHHHH-HHHTCEEEEEESCHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHHHHH---cCCCEEEEcCCCCcHHHH--HHHHH-HhCCCcEEEEcCCHHHHHHHHHHHHh
Confidence 4677889997765544332 256899999999999943 33333 34578999999999999988866654
No 118
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.43 E-value=0.0064 Score=70.25 Aligned_cols=40 Identities=35% Similarity=0.435 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHH
Q 048652 253 PQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLL 296 (1382)
Q Consensus 253 sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll 296 (1382)
...+.+...+.. +..+..+|+||||||||+++..+...+.
T Consensus 44 ~~~~~l~~~l~~----~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 44 HAVTVLKKTLKS----ANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTHHHHHHHTTC----TTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334455555442 2235599999999999999988887765
No 119
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.42 E-value=0.016 Score=62.35 Aligned_cols=49 Identities=22% Similarity=0.097 Sum_probs=38.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRAL 320 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~ 320 (1382)
..+.+|.||||+||||++..++..+...+.++++.+.... ..++..++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~-~~~~~~~~~ 71 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES-RDSIIRQAK 71 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC-HHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC-HHHHHHHHH
Confidence 5799999999999999999999888888888888775442 344555544
No 120
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.37 E-value=0.013 Score=59.92 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=30.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
.....+|+||||||||+++.++...+...+.+++.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 3678999999999999999998888776665555544
No 121
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.37 E-value=0.0061 Score=61.69 Aligned_cols=22 Identities=9% Similarity=0.061 Sum_probs=18.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li 292 (1382)
....+|+||||||||+++.++.
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGC
T ss_pred CCcEEEECCCCccHHHHHHHHH
Confidence 4678999999999999876544
No 122
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.36 E-value=0.017 Score=66.56 Aligned_cols=52 Identities=13% Similarity=-0.019 Sum_probs=44.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l 322 (1382)
...+.+|.||||+|||+++..++......+.++++.+.- ....++..|+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHHHH
Confidence 367999999999999999999999988888899999876 4567788888764
No 123
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.35 E-value=0.0088 Score=72.36 Aligned_cols=48 Identities=21% Similarity=0.358 Sum_probs=32.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRAL 320 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~ 320 (1382)
..+..+|+||||||||+++..+...+ +.....+..++..++++...+.
T Consensus 49 ~~~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~~~~~ir~~~~ 96 (447)
T 3pvs_A 49 HLHSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSGVKEIREAIE 96 (447)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTCCHHHHHHHHH
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccCCHHHHHHHHH
Confidence 34679999999999999988776654 4444444445555555544433
No 124
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.31 E-value=0.0092 Score=64.29 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLL 296 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll 296 (1382)
.-+.+|.||||||||+.+..++..+.
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~ 30 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDE 30 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999877665553
No 125
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.30 E-value=0.014 Score=65.89 Aligned_cols=45 Identities=20% Similarity=0.187 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHhhcc--------cCCCCCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 251 NEPQVGAVFACLRRLD--------CDHKSGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~~~--------~~~~~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
.+.+++++...+..-. -...+...+|+||||||||+++.++...+
T Consensus 26 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 26 QDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4566667666653200 01235689999999999999998776544
No 126
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.29 E-value=0.011 Score=71.02 Aligned_cols=37 Identities=19% Similarity=0.161 Sum_probs=32.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
.+.+.++.||||+|||||+..++..+...+.+|++++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3568999999999999999999999999999987644
No 127
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=95.27 E-value=0.012 Score=70.92 Aligned_cols=50 Identities=28% Similarity=0.331 Sum_probs=42.5
Q ss_pred CCeEEEEcCCCCchHHHH-HHHHHHHHHcCCceEEecCChHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTV-SMLLFSLLRIKCRTLACTPTNVAITELASRAL 320 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI-~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~ 320 (1382)
....+|+||+|||||.+. ..++..+...+.++|+++||..-+.++.+++.
T Consensus 8 g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~ 58 (440)
T 1yks_A 8 GMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFH 58 (440)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHh
Confidence 578999999999999985 55666677778899999999999888887765
No 128
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.27 E-value=0.016 Score=64.53 Aligned_cols=35 Identities=26% Similarity=0.192 Sum_probs=25.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
....+|+||||||||+++.++...+-..+...+.+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v 63 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISL 63 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEE
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEE
Confidence 57899999999999999887766554444444443
No 129
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=95.27 E-value=0.013 Score=70.78 Aligned_cols=49 Identities=29% Similarity=0.349 Sum_probs=42.9
Q ss_pred CCeEEEEcCCCCchHHH-HHHHHHHHHHcCCceEEecCChHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKT-VSMLLFSLLRIKCRTLACTPTNVAITELASRA 319 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTtt-I~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL 319 (1382)
..+.+|.||+|||||.. +..++..++..+.++|+++||..-+.++..++
T Consensus 19 ~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l 68 (451)
T 2jlq_A 19 KRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEAL 68 (451)
T ss_dssp TCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHh
Confidence 57889999999999995 77777777888899999999999888887765
No 130
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.14 E-value=0.016 Score=63.54 Aligned_cols=35 Identities=26% Similarity=0.243 Sum_probs=30.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecC
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTP 307 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAP 307 (1382)
..++.||||+||||++..+...+...|.+|+++.-
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 47889999999999999999999999999876443
No 131
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.05 E-value=0.013 Score=67.43 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 254 QVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 254 Q~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+++..++.. .+..+++||||||||+++.++...+
T Consensus 35 ~~~~l~~~l~~------~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 35 MINRLLIGICT------GGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHHHHHHHHHH------TCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc------CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 34455555443 5689999999999999998776544
No 132
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.02 E-value=0.016 Score=65.74 Aligned_cols=44 Identities=25% Similarity=0.283 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc
Q 048652 251 NEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI 298 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~ 298 (1382)
.+...+.+...+.. +..+..+|+||||||||+++..+...+...
T Consensus 26 ~~~~~~~l~~~l~~----~~~~~~ll~G~~G~GKt~la~~l~~~l~~~ 69 (323)
T 1sxj_B 26 NKETIDRLQQIAKD----GNMPHMIISGMPGIGKTTSVHCLAHELLGR 69 (323)
T ss_dssp CTHHHHHHHHHHHS----CCCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHc----CCCCeEEEECcCCCCHHHHHHHHHHHhcCC
Confidence 34455556665542 333459999999999999999988887654
No 133
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.92 E-value=0.022 Score=60.93 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=35.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCC
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPT 308 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPT 308 (1382)
..+.++.||+|+||||.+..++..+...+.++++..|+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 45999999999999999999999999999999999887
No 134
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.90 E-value=0.017 Score=67.69 Aligned_cols=48 Identities=10% Similarity=0.036 Sum_probs=38.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASR 318 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~R 318 (1382)
..+.+|.||||+||||++..++..+...+.+++.++.....-...+.|
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~r 108 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKN 108 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHH
Confidence 579999999999999999999999988888888877655443333333
No 135
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.90 E-value=0.023 Score=64.80 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHhhccc-CCCCCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 251 NEPQVGAVFACLRRLDC-DHKSGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~~~~-~~~~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
.+.....+...+..... .......+|+||||||||+++.++...+
T Consensus 17 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 17 QERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 45556666666653221 1234689999999999999998877655
No 136
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.87 E-value=0.024 Score=68.57 Aligned_cols=45 Identities=27% Similarity=0.273 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHhhcccC-CCCCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 251 NEPQVGAVFACLRRLDCD-HKSGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~~~~~-~~~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
.+.+++++...+..+... ..+...|+.||||||||+++.++...+
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 42 QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 344555554444433222 223579999999999999998877775
No 137
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.86 E-value=0.021 Score=65.84 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHhhcc-cCCCCCeEEEEcCCCCchHHHHHHHHHH
Q 048652 251 NEPQVGAVFACLRRLD-CDHKSGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~~~-~~~~~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
.+...+++...+.... .....+..+|.||||||||+++.++...
T Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 34 QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4556666666666432 1234567899999999999999887544
No 138
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=94.84 E-value=0.02 Score=66.31 Aligned_cols=43 Identities=23% Similarity=0.194 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhc-ccCCCCCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 253 PQVGAVFACLRRL-DCDHKSGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 253 sQ~~AV~~~l~~~-~~~~~~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
...+.+...+..- ......++.+|+|||||||||++..+...+
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4445555554421 111234689999999999999998877665
No 139
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.83 E-value=0.013 Score=70.51 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecC
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTP 307 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAP 307 (1382)
+.-.|+.||||||||.++.++...+ +..++.++.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~ 248 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT---NATFLKLAA 248 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEeh
Confidence 4468999999999999988776554 444444443
No 140
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.83 E-value=0.013 Score=70.41 Aligned_cols=33 Identities=36% Similarity=0.460 Sum_probs=24.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
+.=.|+.||||||||.++.++...+ +..++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~ 238 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVN 238 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEe
Confidence 3448999999999999998877654 44444443
No 141
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=94.79 E-value=0.05 Score=68.07 Aligned_cols=66 Identities=17% Similarity=0.084 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHH
Q 048652 247 SSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 247 ~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l 322 (1382)
...+.+-|.+||..++. ..-.+|.+|.|+|||.+. .+..+ ..+.++||++|+..-+.+...++.+.
T Consensus 42 ~~~~rp~Q~~~i~~il~-------g~d~lv~~pTGsGKTl~~--~lpal-~~~g~~lVisP~~~L~~q~~~~l~~~ 107 (591)
T 2v1x_A 42 LEKFRPLQLETINVTMA-------GKEVFLVMPTGGGKSLCY--QLPAL-CSDGFTLVICPLISLMEDQLMVLKQL 107 (591)
T ss_dssp CCSCCTTHHHHHHHHHT-------TCCEEEECCTTSCTTHHH--HHHHH-TSSSEEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc-------CCCEEEEECCCChHHHHH--HHHHH-HcCCcEEEEeCHHHHHHHHHHHHHhc
Confidence 34688999999999987 356999999999999653 22223 35679999999999999998888774
No 142
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.73 E-value=0.014 Score=65.25 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=21.9
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHH
Q 048652 269 HKSGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 269 ~~~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
......||+||||||||+++.++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999887765
No 143
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.69 E-value=0.013 Score=65.08 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
...+|.||||||||+++.++...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 34789999999999999877654
No 144
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.69 E-value=0.02 Score=66.50 Aligned_cols=43 Identities=26% Similarity=0.183 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHH
Q 048652 251 NEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLL 296 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll 296 (1382)
.+...+.+...+.. ...+...+|+||||||||+++..+...+.
T Consensus 21 ~~~~~~~L~~~l~~---~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 21 QEHVLTALANGLSL---GRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CHHHHHHHHHHHHH---TCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHh---CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34455556655543 22245689999999999999987766553
No 145
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.66 E-value=0.016 Score=66.13 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+...+|+||||||||+++.++...+
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh
Confidence 5679999999999999998776544
No 146
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.65 E-value=0.022 Score=66.70 Aligned_cols=25 Identities=36% Similarity=0.376 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
....|++||||||||+++.++...+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5678999999999999987776655
No 147
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=94.65 E-value=0.012 Score=74.73 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=42.8
Q ss_pred CCeEEEEcCCCCchHHH-HHHHHHHHHHcCCceEEecCChHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKT-VSMLLFSLLRIKCRTLACTPTNVAITELASRAL 320 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTtt-I~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~ 320 (1382)
....+|+||+|||||.+ +..++..+...+.++|+++||..-+.++.+++.
T Consensus 241 g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~ 291 (673)
T 2wv9_A 241 RQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALR 291 (673)
T ss_dssp TCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHh
Confidence 67899999999999998 466666777788999999999998888877664
No 148
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.015 Score=69.85 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=24.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecC
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTP 307 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAP 307 (1382)
+.=.|+.||||||||.++.++...+ +..++.+..
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~ 248 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPA 248 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeh
Confidence 4568889999999999998877654 444444443
No 149
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.62 E-value=0.015 Score=68.95 Aligned_cols=34 Identities=26% Similarity=0.505 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecC
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTP 307 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAP 307 (1382)
+.=.|+.||||||||.++.++...+ +..++.+..
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~ 215 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSG 215 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEh
Confidence 3458999999999999988876654 444444443
No 150
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.61 E-value=0.019 Score=66.14 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHhh-------ccc-CCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 251 NEPQVGAVFACLRR-------LDC-DHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~-------~~~-~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
.+.+++++...+.. ... .......|++||||||||+++.++...+ +..++.+
T Consensus 23 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v 82 (322)
T 3eie_A 23 LEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSV 82 (322)
T ss_dssp CHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEE
T ss_pred hHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEE
Confidence 45566666665521 111 1224569999999999999998876653 4444443
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.57 E-value=0.026 Score=64.75 Aligned_cols=37 Identities=22% Similarity=0.145 Sum_probs=32.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
.+.+.+|.||||+|||||+..+...+...+.+|++.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 3568999999999999999999988888888887765
No 152
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.56 E-value=0.033 Score=65.56 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=33.5
Q ss_pred HHHHHHHHHHH-hhcccC--CCCCeEEE--EcCCCCchHHHHHHHHHHHHH
Q 048652 252 EPQVGAVFACL-RRLDCD--HKSGVELR--WGPPGTGKTKTVSMLLFSLLR 297 (1382)
Q Consensus 252 ~sQ~~AV~~~l-~~~~~~--~~~~~~LI--~GPPGTGKTttI~~li~~Ll~ 297 (1382)
+.+.+.+...+ ...... ..++..+| .||||||||+++..+...+..
T Consensus 28 ~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~ 78 (412)
T 1w5s_A 28 RGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE 78 (412)
T ss_dssp CHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHH
Confidence 35666777666 433222 34678999 999999999999988877755
No 153
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.55 E-value=0.021 Score=68.74 Aligned_cols=37 Identities=24% Similarity=0.217 Sum_probs=33.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecC
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTP 307 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAP 307 (1382)
+.+.+|.||||+||||++..+...+...|.+|++++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 4589999999999999999999999988999988763
No 154
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=94.55 E-value=0.057 Score=66.95 Aligned_cols=68 Identities=22% Similarity=0.169 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHH
Q 048652 249 TLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 249 ~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l 322 (1382)
.+-+.|.+++.....++. .....+|++|+|||||-.. ++..+. .+.++++++||+.-++++...+..+
T Consensus 3 ~~r~~Q~~~~~~v~~~l~---~~~~~~~~a~TGtGKT~~~--l~p~l~-~~~~v~i~~pt~~l~~q~~~~~~~l 70 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLR---NNFLVALNAPTGSGKTLFS--LLVSLE-VKPKVLFVVRTHNEFYPIYRDLTKI 70 (551)
T ss_dssp SCCHHHHHHHHHHHHHHH---TTCEEEEECCTTSSHHHHH--HHHHHH-HCSEEEEEESSGGGHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHH---cCCcEEEECCCCccHHHHH--HHHHHh-CCCeEEEEcCCHHHHHHHHHHHHHH
Confidence 567889986665544332 2578999999999996543 333333 6889999999999999887665543
No 155
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=94.47 E-value=0.022 Score=63.00 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+...+|.||||||||+++.++...+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 3458999999999999998776543
No 156
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.46 E-value=0.019 Score=66.34 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+...|++||||||||+++.++...+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 3578999999999999998877765
No 157
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.45 E-value=0.042 Score=63.96 Aligned_cols=53 Identities=23% Similarity=0.201 Sum_probs=45.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHHh
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
...+.+|.||||+|||+++..++..+...+.+|++.+.-- ...++..|+....
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm-s~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM-SAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS-CHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CHHHHHHHHHHHh
Confidence 4679999999999999999999999998999999998865 4567888887653
No 158
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.42 E-value=0.025 Score=61.64 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=39.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH-HcCCceEEecCChHHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLL-RIKCRTLACTPTNVAITELASRALR 321 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll-~~~~RILVcAPTN~AVDeVa~RL~~ 321 (1382)
..+.+|.||||+|||+++..++...+ ..+.+++.++.... ..++..|+.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHHH
Confidence 67999999999999999999887654 55788888887654 4556666654
No 159
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=94.41 E-value=0.063 Score=74.84 Aligned_cols=72 Identities=17% Similarity=0.185 Sum_probs=58.3
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHH-HHHHc-CCceEEecCChHHHHHHHHHHHHHhhh
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLF-SLLRI-KCRTLACTPTNVAITELASRALRLVKE 325 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~-~Ll~~-~~RILVcAPTN~AVDeVa~RL~~l~~e 325 (1382)
..+|+-|.+|+...+.. +...+|.+|.|+|||.+.-..+. .|... +.++++++|+.+-+.++...+.+...+
T Consensus 925 ~~fnpiQ~q~~~~l~~~------~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~ 998 (1724)
T 4f92_B 925 PFFNPIQTQVFNTVYNS------DDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQD 998 (1724)
T ss_dssp SBCCHHHHHHHHHHHSC------CSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcC------CCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhch
Confidence 46999999999988863 67899999999999998754444 44443 679999999999999999888775543
No 160
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.41 E-value=0.035 Score=67.95 Aligned_cols=45 Identities=29% Similarity=0.280 Sum_probs=37.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecC---ChHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTP---TNVAITEL 315 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAP---TN~AVDeV 315 (1382)
..+.+|.|+||+||||++..++..+...+.++++++. .+.|++.+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL 148 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQL 148 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHH
Confidence 4478888999999999999999999988999988776 56666654
No 161
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.40 E-value=0.021 Score=65.60 Aligned_cols=40 Identities=18% Similarity=0.103 Sum_probs=33.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHc--CCceEEecCChHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSLLRI--KCRTLACTPTNVA 311 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~Ll~~--~~RILVcAPTN~A 311 (1382)
++++|.|||||||||++..+++...+. +.+++.+..-+..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh
Confidence 489999999999999999999998876 6788877765543
No 162
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.38 E-value=0.051 Score=61.52 Aligned_cols=52 Identities=15% Similarity=0.061 Sum_probs=39.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCceEEecCChHHHHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRI-KCRTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~-~~RILVcAPTN~AVDeVa~RL~~l 322 (1382)
...+.+|.||||+||||++..++..+... |.+|++.+.... ..++..|+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~-~~~~~~r~~~~ 86 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIGL 86 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC-HHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC-HHHHHHHHHHH
Confidence 36799999999999999999988888766 668888766442 34556665543
No 163
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.35 E-value=0.051 Score=61.11 Aligned_cols=50 Identities=16% Similarity=0.099 Sum_probs=36.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHc----------CCceEEecCChHHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRI----------KCRTLACTPTNVAITELASRALR 321 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~----------~~RILVcAPTN~AVDeVa~RL~~ 321 (1382)
..+.+|.||||+||||++..++..+... +.+++.++.-... +++..|+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~~ 89 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLHA 89 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCH-HHHHHHHHH
Confidence 6799999999999999999988865542 3577776655533 556566654
No 164
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=94.34 E-value=0.028 Score=70.73 Aligned_cols=50 Identities=28% Similarity=0.360 Sum_probs=43.3
Q ss_pred CCeEEEEcCCCCchHHH-HHHHHHHHHHcCCceEEecCChHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKT-VSMLLFSLLRIKCRTLACTPTNVAITELASRAL 320 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTtt-I~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~ 320 (1382)
....++.+|+|||||.. +..++..++..+.++|+++||...+.++.+++.
T Consensus 186 g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 186 KRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp TCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc
Confidence 67899999999999998 466777777888899999999999888887654
No 165
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.34 E-value=0.027 Score=65.90 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=34.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCCh
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTN 309 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN 309 (1382)
..+.+|.||||+||||++..++..+...+.+++.++...
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 679999999999999999999999998888888877654
No 166
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.30 E-value=0.042 Score=57.63 Aligned_cols=37 Identities=30% Similarity=0.216 Sum_probs=30.8
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 269 HKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 269 ~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
.++.+.+|.|+||+||||++..+...+-..+.++.++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 4466899999999999999999888887777777655
No 167
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.30 E-value=0.035 Score=63.40 Aligned_cols=37 Identities=24% Similarity=0.224 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHH-cCCceEEec
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLR-IKCRTLACT 306 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~-~~~RILVcA 306 (1382)
.+.+.+|.||+|+||||++..+...+.. .|.+|++++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4569999999999999999999988875 688888765
No 168
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.27 E-value=0.03 Score=65.70 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=35.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCCh
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTN 309 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN 309 (1382)
..+.+|.||||+|||+++..++..+...+.+++.++...
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 679999999999999999999999998888888877654
No 169
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.18 E-value=0.053 Score=60.89 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=36.6
Q ss_pred CccccCCCCCCCCCHHHHHHHHHHHhhcccC-CCCCeEEEEcCCCCchHHHHHHHHHH
Q 048652 238 WDEKFGPSLSSTLNEPQVGAVFACLRRLDCD-HKSGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 238 ~~~~~~~~~~~~LN~sQ~~AV~~~l~~~~~~-~~~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
|..+...+.....|+.+-.......-. .. .+....+++||||||||.++.+++..
T Consensus 72 ~n~i~~~l~~qg~~~~~~~~~l~~~l~--~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 72 SNRIYKILELNGYDPQYAASVFLGWAT--KKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp GCHHHHHHHHTTCCHHHHHHHHHHHHT--TCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHh--CCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 444444455677899885554444332 11 22457999999999999999887764
No 170
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.14 E-value=0.023 Score=67.81 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+.=.|+.||||||||.++.++...+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~ 240 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQT 240 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHh
Confidence 4568999999999999988876654
No 171
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.11 E-value=0.059 Score=65.17 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=42.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHH-cCCceEEecCChHHHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLR-IKCRTLACTPTNVAITELASRALR 321 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~-~~~RILVcAPTN~AVDeVa~RL~~ 321 (1382)
...+.+|.||||+|||+++..++..+.. .+.+|++.+....+ .++..|+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~-~~l~~r~~~ 253 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA-QQLVMRMLC 253 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH-HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHH
Confidence 4679999999999999999999998886 57899998876543 677888764
No 172
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.11 E-value=0.047 Score=57.22 Aligned_cols=39 Identities=18% Similarity=0.061 Sum_probs=33.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCCh
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTN 309 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN 309 (1382)
.++..|.||+|+||||++..++..|-..+.+|-++....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 468999999999999999999999888888887766544
No 173
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.10 E-value=0.1 Score=54.89 Aligned_cols=80 Identities=8% Similarity=0.135 Sum_probs=61.4
Q ss_pred hHHHHHHHHHhcCCChhhhhHhhchhhHHhh----------hchHHHHhhHhhccChhHHHHHhhhcCchHHHhHHHHHh
Q 048652 938 NLQEAAEIFAAIGMPDSAVRCFNDLEKYERA----------GRFDELMMLEEGSGNFMEAANTAVLGGDIFLATDLLQKA 1007 (1382)
Q Consensus 938 ~~~~aa~~fe~~~~~~~aa~c~~~~~~y~~a----------~~~~el~~~~~~~~~~~eaa~~~~~~g~~~~~~~~l~~~ 1007 (1382)
...+=++.--+-|...=|.+||..+|+|.+. .++..|+.+++.-|++.-|-..+...||+..++++|.+.
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 3444444444556666666666666666555 233677788899999999999999999999999999999
Q ss_pred cCchhHHHHH
Q 048652 1008 GNFREASKLV 1017 (1382)
Q Consensus 1008 ~~~~~~~~~~ 1017 (1382)
|.+++|.-..
T Consensus 116 ~r~~eA~~~A 125 (177)
T 3mkq_B 116 GSLPLAYAVA 125 (177)
T ss_dssp TCHHHHHHHH
T ss_pred CChHHHHHHH
Confidence 9999998766
No 174
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.09 E-value=0.029 Score=63.31 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=18.2
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 048652 274 ELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 274 ~LI~GPPGTGKTttI~~li~~ 294 (1382)
.+|.||||||||+++.++...
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 899999999999999876543
No 175
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=94.07 E-value=0.059 Score=66.43 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=51.5
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHH
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l 322 (1382)
..+.+.|.+||...+. ..-.+|.+|.|+|||.+. .+..+ ..+.++|+++|+..-+.+...++.+.
T Consensus 24 ~~~r~~Q~~~i~~il~-------g~d~lv~apTGsGKTl~~--~lp~l-~~~g~~lvi~P~~aL~~q~~~~l~~~ 88 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLS-------GRDCLVVMPTGGGKSLCY--QIPAL-LLNGLTVVVSPLISLMKDQVDQLQAN 88 (523)
T ss_dssp SSCCTTHHHHHHHHHT-------TCCEEEECSCHHHHHHHH--HHHHH-HSSSEEEEECSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc-------CCCEEEECCCCcHHHHHH--HHHHH-HhCCCEEEECChHHHHHHHHHHHHHc
Confidence 3678899999999887 357899999999999643 23333 34678999999999999888888763
No 176
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.03 E-value=0.042 Score=66.33 Aligned_cols=52 Identities=13% Similarity=-0.043 Sum_probs=44.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l 322 (1382)
...+.+|.||||+|||+++..++......+.++++.+.-. ...+++.|+...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm-s~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS-CTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC-CHHHHHHHHHHH
Confidence 4679999999999999999999999998899999998764 445677887764
No 177
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.01 E-value=0.04 Score=63.62 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
+.+.+|.||+|+|||||+..+...+...+.+|+++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 558899999999999999999999988899998864
No 178
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.00 E-value=0.029 Score=65.65 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
....||+||||||||+++.++...+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3458999999999999998887765
No 179
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.93 E-value=0.023 Score=68.35 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHhh-c------c--cCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecC
Q 048652 251 NEPQVGAVFACLRR-L------D--CDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTP 307 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~-~------~--~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAP 307 (1382)
-+.|++.+...+.. + . .-..+.-.|+.||||||||.++.++...+ +..++.++.
T Consensus 214 l~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~ 276 (467)
T 4b4t_H 214 CKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIG 276 (467)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEh
Confidence 35677777665432 0 0 11235568999999999999988876654 344444443
No 180
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.89 E-value=0.049 Score=62.34 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCce
Q 048652 254 QVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRT 302 (1382)
Q Consensus 254 Q~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RI 302 (1382)
+...+...+..+. ......+|+||||||||+++.++....-..+...
T Consensus 10 ~~~~~~~~~~~~a--~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~ 56 (304)
T 1ojl_A 10 AMQHLLNEIAMVA--PSDATVLIHGDSGTGKELVARALHACSARSDRPL 56 (304)
T ss_dssp HHHHHHHHHHHHC--STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCC
T ss_pred HHHHHHHHHHHHh--CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCe
Confidence 3344444444322 2356899999999999999877666544444333
No 181
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.84 E-value=0.046 Score=67.00 Aligned_cols=52 Identities=12% Similarity=-0.031 Sum_probs=44.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCceEEecCChHHHHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRI-KCRTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~-~~RILVcAPTN~AVDeVa~RL~~l 322 (1382)
...+.+|.||||+|||+++..++..+... +.+++.++.-.. ..+++.|+...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHHHHH
Confidence 46799999999999999999999999887 889999987664 45788888654
No 182
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.83 E-value=0.027 Score=64.91 Aligned_cols=25 Identities=40% Similarity=0.484 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
.+..||+||||||||+++.++...+
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred CceEEEECCCCccHHHHHHHHHHhC
Confidence 4569999999999999987766544
No 183
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.79 E-value=0.04 Score=64.87 Aligned_cols=40 Identities=13% Similarity=0.147 Sum_probs=35.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNV 310 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~ 310 (1382)
..+.+|.||||+|||+++..++..+...+.+++.++.-..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s 113 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA 113 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 6799999999999999999999999988889988887653
No 184
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.79 E-value=0.041 Score=67.40 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
.+..|+.||||||||+++.++...+
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred CCeeEeecCchHHHHHHHHHHHHHH
Confidence 5789999999999999987776544
No 185
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=93.76 E-value=0.041 Score=72.97 Aligned_cols=73 Identities=15% Similarity=0.084 Sum_probs=54.7
Q ss_pred CCCCHHHHHHHHHHHhhcccC-------CCCCeEEEEcCCCCchHHHHHHHHHHHHHc---CCceEEecCChHHHHHHHH
Q 048652 248 STLNEPQVGAVFACLRRLDCD-------HKSGVELRWGPPGTGKTKTVSMLLFSLLRI---KCRTLACTPTNVAITELAS 317 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~-------~~~~~~LI~GPPGTGKTttI~~li~~Ll~~---~~RILVcAPTN~AVDeVa~ 317 (1382)
..+.+.|..||..++..+... ....-.+||.|.|||||-++..++ .++.. ..++|+++|++.=++++..
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 358899999999998754221 012457999999999999986655 44432 3699999999988888776
Q ss_pred HHHH
Q 048652 318 RALR 321 (1382)
Q Consensus 318 RL~~ 321 (1382)
.+..
T Consensus 349 ~f~~ 352 (1038)
T 2w00_A 349 EYQR 352 (1038)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6654
No 186
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.76 E-value=0.047 Score=65.70 Aligned_cols=44 Identities=32% Similarity=0.293 Sum_probs=35.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHc-CCceEEecC---ChHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRI-KCRTLACTP---TNVAITE 314 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~-~~RILVcAP---TN~AVDe 314 (1382)
+.+.+|.|++|+|||||+..+..++... |.||++++- .+.|+++
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~q 147 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQ 147 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHH
Confidence 4577788999999999999999999998 999988653 3345544
No 187
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.73 E-value=0.045 Score=66.10 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=26.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCC
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPT 308 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPT 308 (1382)
....||+||||||||+++.++...+ .+..++.+..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~ 202 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSS 202 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHH
Confidence 4678999999999999998877665 23444444443
No 188
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.72 E-value=0.031 Score=65.62 Aligned_cols=25 Identities=36% Similarity=0.409 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
....+++||||||||+++..+...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999988776654
No 189
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.69 E-value=0.07 Score=63.86 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 249 TLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 249 ~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
.+...+..++...+. ...++.+|.||.|+|||||+.+++..+-....+|++.
T Consensus 150 g~~~~~~~~L~~l~~-----~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIK-----RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp CCCHHHHHHHHHHHT-----SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred CCCHHHHHHHHHHHH-----hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 466677777776643 3467999999999999999999887664445566654
No 190
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.68 E-value=0.028 Score=62.05 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=18.8
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 048652 274 ELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 274 ~LI~GPPGTGKTttI~~li~~L 295 (1382)
.+|.|||||||||++.++...+
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999998776543
No 191
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.64 E-value=0.049 Score=58.20 Aligned_cols=35 Identities=14% Similarity=0.076 Sum_probs=28.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecC
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTP 307 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAP 307 (1382)
...+.+|.||||+||||++..++. ..+.+++.++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEEC
Confidence 367999999999999999988877 55667766553
No 192
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.63 E-value=0.035 Score=65.00 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
.....||+||||||||+++.++...+
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45679999999999999998876543
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.62 E-value=0.096 Score=61.23 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=34.0
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecC
Q 048652 269 HKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTP 307 (1382)
Q Consensus 269 ~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAP 307 (1382)
++..+..|.|+||+||||++..++..+...+.+|++++.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 345689999999999999999999999988999888653
No 194
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=93.57 E-value=0.064 Score=65.17 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 048652 252 EPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR 297 (1382)
Q Consensus 252 ~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~ 297 (1382)
+.+.+.+...+.. ...+..||.||||||||+++..+...+..
T Consensus 186 ~~~i~~l~~~l~r----~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 186 SKEIQRVIEVLSR----RTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp HHHHHHHHHHHHC----SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhc----cCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 3344444444432 33456799999999999999988887754
No 195
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.56 E-value=0.06 Score=60.00 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=29.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
..+.+|.||||+||||++..+...|-..+..+++++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 468999999999999999998888776777766443
No 196
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.54 E-value=0.082 Score=63.72 Aligned_cols=52 Identities=12% Similarity=0.004 Sum_probs=43.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHH-cCCceEEecCChHHHHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLR-IKCRTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~-~~~RILVcAPTN~AVDeVa~RL~~l 322 (1382)
...+.+|.||||+|||+++..++..... .+.++++.+.-.. ..++..|+...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHHH
Confidence 4679999999999999999999998887 4789999888654 45788887753
No 197
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.48 E-value=0.081 Score=59.31 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=55.6
Q ss_pred CcccccccccccchhhhcccccccchHhhcCccccCChHHHHHhHHHHHHHHHhcCCChhhhhHhhchhh-HHhhhch--
Q 048652 895 KYEKTTLCYDKDGETYWEGRSTATDRKAAADPMCSSNPKEVKFNLQEAAEIFAAIGMPDSAVRCFNDLEK-YERAGRF-- 971 (1382)
Q Consensus 895 ~~~~~~~cf~~ag~~~~~~~a~a~~l~~~a~~~~~~~~~~~~~~~~~aa~~fe~~~~~~~aa~c~~~~~~-y~~a~~~-- 971 (1382)
+|+.|..||++||..+.. ..+.+.|-..|.+|.++++..|....+|.+|..+|. |.+.|++
T Consensus 32 ~~~~A~~~~~~a~~~~~~----------------~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQAATIYRL----------------RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 589999999998776532 245677788888888888888888777777766666 5555555
Q ss_pred -----HHHHhhHhhccChhHHHHHh
Q 048652 972 -----DELMMLEEGSGNFMEAANTA 991 (1382)
Q Consensus 972 -----~el~~~~~~~~~~~eaa~~~ 991 (1382)
+.-+.+....|++..||..+
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~ 120 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFK 120 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33344455666666555443
No 198
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.42 E-value=0.13 Score=57.83 Aligned_cols=52 Identities=15% Similarity=0.164 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhcccCCCCCeEEEEcC-CCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 254 QVGAVFACLRRLDCDHKSGVELRWGP-PGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 254 Q~~AV~~~l~~~~~~~~~~~~LI~GP-PGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
+.+.+...+..........+.+|.|+ ||.||||+.+.+...|...|.|||++
T Consensus 65 a~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 65 KFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp HHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 34445555544333344568888887 99999999999999999999999986
No 199
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.41 E-value=0.066 Score=56.19 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=29.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe-cCChHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC-TPTNVAI 312 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc-APTN~AV 312 (1382)
+..|.||||+||||++..+...+-..+..++.+ .|....+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~ 42 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTET 42 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcH
Confidence 468999999999999998888877767766543 3444444
No 200
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.39 E-value=0.06 Score=56.13 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=26.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
+.+|.||||+||||++..+...+-..+..+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~ 35 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII 35 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence 678999999999999988888776556555555
No 201
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=93.31 E-value=0.045 Score=56.02 Aligned_cols=24 Identities=21% Similarity=0.106 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
.+.+|.||||+||||++..+...+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 367899999999999987766554
No 202
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.28 E-value=0.086 Score=60.20 Aligned_cols=45 Identities=24% Similarity=0.230 Sum_probs=36.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCC---hHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPT---NVAITEL 315 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPT---N~AVDeV 315 (1382)
+.+.+|.||||+||||++..+...+...+.+|+++..- +.|.+++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql 145 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQL 145 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHH
Confidence 44788889999999999999999998889998886643 4555543
No 203
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.24 E-value=0.072 Score=62.93 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHhhcc--------cCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecC
Q 048652 251 NEPQVGAVFACLRRLD--------CDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTP 307 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~~~--------~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAP 307 (1382)
.+.+++++...+.... ........||+||||||||+++.++... .+..++.+..
T Consensus 120 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~ 181 (389)
T 3vfd_A 120 QDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISA 181 (389)
T ss_dssp CHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECS
T ss_pred HHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeH
Confidence 4456666666552210 0123468999999999999999877443 2444444443
No 204
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.23 E-value=0.067 Score=58.29 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=28.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH-HcCCceEEecC
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLL-RIKCRTLACTP 307 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll-~~~~RILVcAP 307 (1382)
..+..|.||||+||||++..++...+ ..+..+++...
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 67999999999999999998886555 55555555443
No 205
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.23 E-value=0.044 Score=56.75 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+.+.+|.||||+||||+...+...+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999987765544
No 206
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.18 E-value=0.063 Score=60.93 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
.+.+.+|.||||+||||++..+...+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35588999999999999988776543
No 207
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=93.17 E-value=0.17 Score=64.27 Aligned_cols=73 Identities=22% Similarity=0.240 Sum_probs=57.9
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHHhh
Q 048652 247 SSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRLVK 324 (1382)
Q Consensus 247 ~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l~~ 324 (1382)
.+.++..|..|+...+..+... ....++.|++|||||.|++.++..+ +..+||++|+...+.++.+.|.....
T Consensus 6 ~~~~~~~q~~ai~~l~~~~~~~--~~~~~l~g~tgs~kt~~~a~~~~~~---~~~~lvv~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 6 GPSPKGDQPKAIAGLVEALRDG--ERFVTLLGATGTGKTVTMAKVIEAL---GRPALVLAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp SCCCCTTHHHHHHHHHHHHHTT--CSEEEEEECTTSCHHHHHHHHHHHH---TCCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCChHHHHHHHHHHhcC--CCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecCHHHHHHHHHHHHHHCC
Confidence 3478889999998776654322 2245788999999999998877655 66899999999999999999988753
No 208
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.14 E-value=0.14 Score=54.46 Aligned_cols=51 Identities=14% Similarity=-0.014 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 254 QVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 254 Q~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
+.+++...+.+. ......+..|.||+|+||||++..+...+-..+..+.+.
T Consensus 6 ~~~~l~~~~~~~-~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 6 RIDFLCKTILAI-KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp HHHHHHHHHHTS-CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHh-ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 344455444432 123356899999999999999988777665556666554
No 209
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.10 E-value=0.051 Score=56.87 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+.+.+|.||||+||||++..+...+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4688999999999999988877655
No 210
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.08 E-value=0.067 Score=59.01 Aligned_cols=35 Identities=20% Similarity=0.102 Sum_probs=31.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
..+.++.|+||+||||++..++..+. .+.+++++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 46899999999999999999999999 999998875
No 211
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=93.02 E-value=0.15 Score=71.18 Aligned_cols=71 Identities=21% Similarity=0.234 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHH-HHHH----------cCCceEEecCChHHHHHHH
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLF-SLLR----------IKCRTLACTPTNVAITELA 316 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~-~Ll~----------~~~RILVcAPTN~AVDeVa 316 (1382)
..||+-|.+++..++.. +...||.+|.|+|||.+....+. .|.+ .+.+++.+||+.+=+.|+.
T Consensus 78 ~~ln~iQs~~~~~al~~------~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~ 151 (1724)
T 4f92_B 78 KTLNRIQSKLYRAALET------DENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMV 151 (1724)
T ss_dssp SBCCHHHHHTHHHHHTC------CCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC------CCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHH
Confidence 46999999999999874 67899999999999988744443 4433 2568999999999999999
Q ss_pred HHHHHHhh
Q 048652 317 SRALRLVK 324 (1382)
Q Consensus 317 ~RL~~l~~ 324 (1382)
..+.+...
T Consensus 152 ~~l~~~~~ 159 (1724)
T 4f92_B 152 GSFGKRLA 159 (1724)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 88877654
No 212
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.99 E-value=0.058 Score=56.23 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcC
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIK 299 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~ 299 (1382)
+.+.+|.||||+||||++..+...+-..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 31 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 31 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 35889999999999999888777665444
No 213
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.99 E-value=0.042 Score=61.72 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 048652 274 ELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 274 ~LI~GPPGTGKTttI~~li~~L 295 (1382)
.+|.|||||||||++.++...+
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 8999999999999998776543
No 214
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.88 E-value=0.076 Score=61.26 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=32.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHc------CCceEEecCCh
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRI------KCRTLACTPTN 309 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~------~~RILVcAPTN 309 (1382)
..+.+|.||||+|||+++..++...... +.+++.++..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 6799999999999999999998876554 66777776655
No 215
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.85 E-value=0.051 Score=56.08 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=18.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~ 293 (1382)
.+.+|.||||+||||++..+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999877655
No 216
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.83 E-value=0.064 Score=55.95 Aligned_cols=25 Identities=28% Similarity=0.048 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
....+|.||||+||||+...+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678899999999999988776655
No 217
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.82 E-value=0.037 Score=63.74 Aligned_cols=24 Identities=33% Similarity=0.304 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
..+.+|.||||||||+++..++..
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 457899999999999999888765
No 218
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=92.81 E-value=0.11 Score=54.92 Aligned_cols=32 Identities=16% Similarity=0.074 Sum_probs=25.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceE
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTL 303 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RIL 303 (1382)
+.+.+|.||||+||||++..+...+-..+ .++
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~ 35 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR-DVY 35 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEE
Confidence 35789999999999999988877765444 443
No 219
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.80 E-value=0.065 Score=55.76 Aligned_cols=25 Identities=32% Similarity=0.195 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+.+|.||||+||||++..+...+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4678999999999999988776554
No 220
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.79 E-value=0.049 Score=55.52 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=17.6
Q ss_pred CeEEEEcCCCCchHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSML 291 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~l 291 (1382)
.+.+|.||||+||||++..+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47889999999999998766
No 221
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.79 E-value=0.096 Score=56.13 Aligned_cols=40 Identities=13% Similarity=0.029 Sum_probs=36.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCCh
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTN 309 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN 309 (1382)
..+..+|.+|||+||||.+..+....+..|.||+++.+-.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~K 66 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIK 66 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 3689999999999999999999999999999999997755
No 222
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.78 E-value=0.1 Score=56.65 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=35.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCCh
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTN 309 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN 309 (1382)
..+.++.||+|+||||.+..++......+.++++..|.-
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 458899999999999999999999999999999998864
No 223
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.76 E-value=0.086 Score=61.06 Aligned_cols=37 Identities=27% Similarity=0.195 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
.+.+..|.||+|+||||++..+...+...+.+|++.+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4679999999999999999999988877777887754
No 224
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.69 E-value=0.053 Score=56.83 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~ 293 (1382)
..+..|.||||+||||++..+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 56899999999999999876643
No 225
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.68 E-value=0.11 Score=56.48 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=29.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHH------cCCceEEecCCh
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLR------IKCRTLACTPTN 309 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~------~~~RILVcAPTN 309 (1382)
..+.+|.||||+||||++..++...+. .+.+++.++...
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 679999999999999999998876443 245666655443
No 226
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.65 E-value=0.1 Score=54.51 Aligned_cols=33 Identities=21% Similarity=0.042 Sum_probs=26.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
+..|.||||+||||++..+...+-..+..++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 468999999999999988877776556665543
No 227
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=92.61 E-value=0.082 Score=67.09 Aligned_cols=48 Identities=17% Similarity=0.291 Sum_probs=38.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l 322 (1382)
....+|.||+|||||+.+ +..+... .+.++++||...+.++.+++.+.
T Consensus 155 rk~vlv~apTGSGKT~~a---l~~l~~~-~~gl~l~PtR~LA~Qi~~~l~~~ 202 (677)
T 3rc3_A 155 RKIIFHSGPTNSGKTYHA---IQKYFSA-KSGVYCGPLKLLAHEIFEKSNAA 202 (677)
T ss_dssp CEEEEEECCTTSSHHHHH---HHHHHHS-SSEEEEESSHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHH---HHHHHhc-CCeEEEeCHHHHHHHHHHHHHhc
Confidence 568999999999999933 3344443 45599999999999999998763
No 228
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.59 E-value=0.11 Score=59.66 Aligned_cols=38 Identities=29% Similarity=0.330 Sum_probs=31.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecC
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTP 307 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAP 307 (1382)
.+.+..|.||.|+||||++..+...+-..+.+|++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~ 138 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG 138 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 45789999999999999999988877777788877653
No 229
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.58 E-value=0.11 Score=55.19 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=27.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEE
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLA 304 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILV 304 (1382)
+.+.+|.|||||||||++..+...+-..+..+.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~ 42 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAEL 42 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEE
Confidence 5689999999999999999888777656655533
No 230
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=92.56 E-value=0.18 Score=57.56 Aligned_cols=50 Identities=20% Similarity=0.189 Sum_probs=37.5
Q ss_pred HHHHHHhhcccCCCCCeEEEEcC-CCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 257 AVFACLRRLDCDHKSGVELRWGP-PGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 257 AV~~~l~~~~~~~~~~~~LI~GP-PGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
.+...+.-........+.+|.|+ ||.||||+.+.+...|...|.|||++-
T Consensus 90 ~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 90 ALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp HHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 34433433223344568888887 999999999999999999999999873
No 231
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.55 E-value=0.063 Score=55.27 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
..+..|.||||+||||++..+...
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999998665544
No 232
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.49 E-value=0.084 Score=64.52 Aligned_cols=44 Identities=23% Similarity=0.208 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHhhcc---------cCCCCCeEEEEcCCCCchHHHHHHHHHH
Q 048652 251 NEPQVGAVFACLRRLD---------CDHKSGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 251 N~sQ~~AV~~~l~~~~---------~~~~~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
.+.|++.+...+.... ....+...||+||||||||+++.++...
T Consensus 209 ~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 209 CRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 4567777776665310 0123456999999999999998777543
No 233
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=92.45 E-value=0.12 Score=65.23 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=41.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHHh
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
....+++||.|||||..+. ..++..+.++|+++||...+.++++++.+..
T Consensus 232 ~~~vlv~ApTGSGKT~a~~---l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~ 281 (666)
T 3o8b_A 232 FQVAHLHAPTGSGKSTKVP---AAYAAQGYKVLVLNPSVAATLGFGAYMSKAH 281 (666)
T ss_dssp CEEEEEECCTTSCTTTHHH---HHHHHTTCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCchhHHHHHH---HHHHHCCCeEEEEcchHHHHHHHHHHHHHHh
Confidence 5689999999999996554 3456678899999999999999999887643
No 234
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.45 E-value=0.074 Score=54.65 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=20.0
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 269 HKSGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 269 ~~~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
|...+.+|.|+|||||||+...+...|
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHHHh
Confidence 446789999999999999887665444
No 235
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=92.44 E-value=0.18 Score=57.19 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhhcccCCCCCeEEEEcC-CCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 253 PQVGAVFACLRRLDCDHKSGVELRWGP-PGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 253 sQ~~AV~~~l~~~~~~~~~~~~LI~GP-PGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
.+.+.+...+.-...+....+.+|.|+ ||.||||+.+.+...|...+.|||++-
T Consensus 74 Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 74 EAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 344455555543233344567777776 999999999999999999999999863
No 236
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.33 E-value=0.12 Score=54.25 Aligned_cols=36 Identities=22% Similarity=0.038 Sum_probs=29.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
.++..|.||+|+||||++..++..+-..+.++-++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~ 41 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 41 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEe
Confidence 478999999999999999999888776666654433
No 237
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.28 E-value=0.084 Score=56.08 Aligned_cols=25 Identities=24% Similarity=0.057 Sum_probs=21.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+.+|.||||+||||++..+...+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999998877665
No 238
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.23 E-value=0.08 Score=58.69 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=20.7
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHH
Q 048652 269 HKSGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 269 ~~~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
+.+.+.+|.||||+||||++..+...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44568899999999999998766544
No 239
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.22 E-value=0.2 Score=54.34 Aligned_cols=43 Identities=19% Similarity=0.168 Sum_probs=33.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe-cCChHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC-TPTNVAIT 313 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc-APTN~AVD 313 (1382)
.-+.+|.||||+||||.+..+...|-..+..+.++ -|+...+-
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g 49 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLA 49 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHH
Confidence 45889999999999999999988888777766544 56655443
No 240
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.22 E-value=0.085 Score=55.32 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+.+|.||||+||||++..+...+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999988776654
No 241
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.18 E-value=0.12 Score=59.15 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=31.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
.+.+..|.||.|+||||++..+...+-..+.+|++.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3568999999999999999998888777778888765
No 242
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.16 E-value=0.087 Score=54.45 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
..+.+|.||||+||||++..+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 458899999999999998766543
No 243
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.15 E-value=0.09 Score=55.93 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
...+..|.||||+||||++..+...+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999987766544
No 244
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.14 E-value=0.1 Score=60.68 Aligned_cols=49 Identities=18% Similarity=0.115 Sum_probs=35.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHH------cCCceEEecCChH-HHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLR------IKCRTLACTPTNV-AITELASRA 319 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~------~~~RILVcAPTN~-AVDeVa~RL 319 (1382)
..+.+|.||||+|||+++..++..... .+.+++.++..+. ....+..++
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~ 177 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIA 177 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 579999999999999999998887544 3567777776653 233444443
No 245
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.14 E-value=0.12 Score=66.61 Aligned_cols=42 Identities=24% Similarity=0.372 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 048652 252 EPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR 297 (1382)
Q Consensus 252 ~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~ 297 (1382)
+.+.+.+...+.. ...+..|+.||||||||+++..+...+..
T Consensus 186 ~~~i~~l~~~l~~----~~~~~vLL~G~pGtGKT~la~~la~~l~~ 227 (758)
T 3pxi_A 186 SKEIQRVIEVLSR----RTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (758)
T ss_dssp HHHHHHHHHHHHC----SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhC----CCCCCeEEECCCCCCHHHHHHHHHHHHhc
Confidence 4445555555542 33556899999999999999888877754
No 246
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.10 E-value=0.07 Score=64.21 Aligned_cols=25 Identities=32% Similarity=0.310 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
.+..|+.||||||||+++.++...+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999987766554
No 247
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=92.03 E-value=0.2 Score=56.52 Aligned_cols=99 Identities=20% Similarity=0.188 Sum_probs=54.8
Q ss_pred ccCcccccccccccchhhhcccccccchHhhcCccccCChHHHHHhHHHHHHHHHhcCCChhhhhHhhchhh-HHhhhch
Q 048652 893 KPKYEKTTLCYDKDGETYWEGRSTATDRKAAADPMCSSNPKEVKFNLQEAAEIFAAIGMPDSAVRCFNDLEK-YERAGRF 971 (1382)
Q Consensus 893 ~~~~~~~~~cf~~ag~~~~~~~a~a~~l~~~a~~~~~~~~~~~~~~~~~aa~~fe~~~~~~~aa~c~~~~~~-y~~a~~~ 971 (1382)
..+|+.|..+|++||..+.. ..+.+.+...|.+|+++++..|....++.+|..++. |.+.|++
T Consensus 29 ~~~~~~A~~~~~~a~~~~~~----------------~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~ 92 (307)
T 2ifu_A 29 KPDYDSAASEYAKAAVAFKN----------------AKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM 92 (307)
T ss_dssp SCCHHHHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred CCCHHHHHHHHHHHHHHHHH----------------cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCH
Confidence 46788888888888765542 134555666666666666666666666655555544 3333444
Q ss_pred -------HHHHhhHhhccChhHHH-------HHhhhcCchHHHhHHHHHhc
Q 048652 972 -------DELMMLEEGSGNFMEAA-------NTAVLGGDIFLATDLLQKAG 1008 (1382)
Q Consensus 972 -------~el~~~~~~~~~~~eaa-------~~~~~~g~~~~~~~~l~~~~ 1008 (1382)
+.-+.+....|++..++ .++.. |+...|+++|.++-
T Consensus 93 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 93 PEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 33333334455544333 33333 55555555555543
No 248
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.01 E-value=0.17 Score=65.22 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=26.7
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
..|++||||||||+++.++...+...+..++.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i 555 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRI 555 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE
Confidence 699999999999999999888886655555443
No 249
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.96 E-value=0.084 Score=55.08 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+.+.+|.||||+||||+...+...+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999987766554
No 250
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.95 E-value=0.1 Score=55.48 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+.+|.||||+||||++..+...+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999987766554
No 251
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.92 E-value=0.1 Score=55.27 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
-+.+|.||||+||||++..+...+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999987776655
No 252
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=91.77 E-value=0.09 Score=63.96 Aligned_cols=24 Identities=38% Similarity=0.356 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
.-.+|.||||||||+++.++...+
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999998876643
No 253
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.77 E-value=0.12 Score=60.19 Aligned_cols=39 Identities=15% Similarity=0.084 Sum_probs=34.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCC
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPT 308 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPT 308 (1382)
...+.++.|.+|+||||+.+++...+...|.|||++.--
T Consensus 25 ~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 63 (349)
T 3ug7_A 25 GTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTD 63 (349)
T ss_dssp SCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECC
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 356888889999999999999999999999999998743
No 254
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.75 E-value=0.18 Score=65.91 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH-------cCCceEEecC
Q 048652 253 PQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR-------IKCRTLACTP 307 (1382)
Q Consensus 253 sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~-------~~~RILVcAP 307 (1382)
...+.+...+.. ...+..++.||||||||+++..+...+.. .+.+++.+..
T Consensus 177 ~~i~~l~~~l~~----~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 177 EEIRRVIQILLR----RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp HHHHHHHHHHHC----SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred HHHHHHHHHHhc----CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 344444444432 33456799999999999999998888865 2566666544
No 255
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.72 E-value=0.099 Score=54.49 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
.+.+|.||||+||||+...+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 568899999999999987766544
No 256
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=91.71 E-value=0.14 Score=60.44 Aligned_cols=41 Identities=24% Similarity=0.260 Sum_probs=37.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVA 311 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~A 311 (1382)
.+..+|.||+|+|||+++..++..+...+.+|+++=|.+..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREY 75 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCH
Confidence 67899999999999999999999998889999999988754
No 257
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.70 E-value=0.14 Score=54.80 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=34.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCC
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPT 308 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPT 308 (1382)
..+.+|.||+|+||||-+...+......+.+|++..|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 56999999999999999999999988899999999876
No 258
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.66 E-value=0.086 Score=54.92 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+.+.+|.||||+||||++..+...+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999999999999988776554
No 259
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.63 E-value=0.13 Score=60.38 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=28.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCceEE
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRI-KCRTLA 304 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~-~~RILV 304 (1382)
..++.+|.||+|+||||++.+++..+-.. +.+|++
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t 157 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILT 157 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEE
Confidence 36799999999999999999988777655 556654
No 260
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=91.61 E-value=0.13 Score=57.99 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=49.5
Q ss_pred ccCcccccccccccchhhhcc-----cccccchHhhcCcccc-CChHHHHHhHHHHHHHHHhcCCChhhhhHhhchhh-H
Q 048652 893 KPKYEKTTLCYDKDGETYWEG-----RSTATDRKAAADPMCS-SNPKEVKFNLQEAAEIFAAIGMPDSAVRCFNDLEK-Y 965 (1382)
Q Consensus 893 ~~~~~~~~~cf~~ag~~~~~~-----~a~a~~l~~~a~~~~~-~~~~~~~~~~~~aa~~fe~~~~~~~aa~c~~~~~~-y 965 (1382)
..+|+.|..||++|.+.+... .+.+ +...+..... .+.+.|...|++|.++|.+.|....++.++..++. |
T Consensus 49 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~--~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~ 126 (307)
T 2ifu_A 49 AKQLEQAKDAYLQEAEAHANNRSLFHAAKA--FEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM 126 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--HHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 467888888888777765432 1122 1122222222 36678888888888888888888888877777766 5
Q ss_pred Hhhhch
Q 048652 966 ERAGRF 971 (1382)
Q Consensus 966 ~~a~~~ 971 (1382)
++ |++
T Consensus 127 ~~-g~~ 131 (307)
T 2ifu_A 127 EP-LDL 131 (307)
T ss_dssp TT-TCH
T ss_pred Hc-CCH
Confidence 55 665
No 261
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.60 E-value=0.096 Score=58.22 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+.+|.|||||||||++..+...+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 67899999999999988876654
No 262
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.54 E-value=0.27 Score=54.16 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=34.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCc--eEEecCChHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCR--TLACTPTNVAIT 313 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~R--ILVcAPTN~AVD 313 (1382)
+.+.+|.||||+||||.+..+...|-..+.. +++-.|+...+-
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g 71 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLA 71 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHH
Confidence 5689999999999999999999988888776 344567665443
No 263
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=91.53 E-value=0.1 Score=54.12 Aligned_cols=23 Identities=26% Similarity=0.200 Sum_probs=18.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+|.||||+||||+...+...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 57889999999999987766543
No 264
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.53 E-value=0.098 Score=64.78 Aligned_cols=26 Identities=38% Similarity=0.486 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..++.++.||||||||+++..+...+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999998776665
No 265
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=91.52 E-value=0.17 Score=57.75 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHH
Q 048652 252 EPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 252 ~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
+.+.+.+...+.. .++.+|.||||+|||+++..+...
T Consensus 18 ~~el~~L~~~l~~------~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 18 EEESRKLEESLEN------YPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HHHHHHHHHHHHH------CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc------CCeEEEECCCcCCHHHHHHHHHHH
Confidence 4556677777653 379999999999999999877654
No 266
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.46 E-value=0.11 Score=55.17 Aligned_cols=27 Identities=30% Similarity=0.243 Sum_probs=22.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLL 296 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll 296 (1382)
...+..|.||||+||||++..+...+-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999877766554
No 267
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.45 E-value=0.12 Score=55.77 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+.+.+|.||||+||||++..+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999987776554
No 268
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.43 E-value=0.11 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+.+.+|.||||+||||++..+...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999987766554
No 269
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.41 E-value=0.18 Score=53.60 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=25.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCce
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRT 302 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RI 302 (1382)
+.+.+|.||||+||||++..+...+-..+..+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 56899999999999999988777665444444
No 270
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.40 E-value=0.16 Score=59.58 Aligned_cols=46 Identities=28% Similarity=0.280 Sum_probs=35.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecC-Ch--HHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTP-TN--VAITEL 315 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAP-TN--~AVDeV 315 (1382)
.+.+..|.||.|+||||++..+...+-..+.+|++.+- +. .|++++
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql 204 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQL 204 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHH
Confidence 35689999999999999999988887777788887653 32 345554
No 271
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.37 E-value=0.11 Score=55.62 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
.+.+..|.||+|+||||++..+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3678999999999999998776544
No 272
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.32 E-value=0.11 Score=54.49 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+.+.+|.||||+||||++..+...+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999987776655
No 273
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.27 E-value=0.25 Score=54.21 Aligned_cols=44 Identities=18% Similarity=0.125 Sum_probs=30.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHc----CCceEE-ecCChHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRI----KCRTLA-CTPTNVAITE 314 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~----~~RILV-cAPTN~AVDe 314 (1382)
.-+.+|.||||+||||.+..+...|-.. +..+.+ --|+...+-+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~ 73 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGE 73 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHH
Confidence 5689999999999999999998888766 777654 4576554433
No 274
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.16 E-value=0.34 Score=52.53 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=37.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCC-c-eEEecCChHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKC-R-TLACTPTNVAITELASRAL 320 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~-R-ILVcAPTN~AVDeVa~RL~ 320 (1382)
..+.+|.||||+||||.+..+...|-..+. . +++--|+.+.+-+....+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l 54 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLL 54 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHH
Confidence 468899999999999999999998888775 4 4455677665554444333
No 275
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.13 E-value=0.19 Score=52.11 Aligned_cols=33 Identities=21% Similarity=0.048 Sum_probs=25.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceE
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTL 303 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RIL 303 (1382)
..+..|.||||+||||++..+...+-..+..++
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i 37 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 37 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEE
Confidence 567889999999999998887776654454444
No 276
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.12 E-value=0.12 Score=55.36 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=18.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 048652 274 ELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 274 ~LI~GPPGTGKTttI~~li~~L 295 (1382)
.+|.||||+||||++..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999987765544
No 277
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.09 E-value=0.12 Score=54.30 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=19.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~L 295 (1382)
...|.||||+||||++..+...+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999997776655
No 278
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.08 E-value=0.085 Score=54.71 Aligned_cols=24 Identities=38% Similarity=0.335 Sum_probs=15.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
+.+.+|.||||+||||++..+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468899999999999998776543
No 279
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.05 E-value=0.12 Score=54.33 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=19.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+.+|.||||+||||++..+...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 46899999999999988776655
No 280
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=91.05 E-value=0.15 Score=61.14 Aligned_cols=44 Identities=16% Similarity=0.024 Sum_probs=31.4
Q ss_pred HHHHhhHhhccChhHHHHHhhhcCch---HHHhHHHHHhcCchhHHH
Q 048652 972 DELMMLEEGSGNFMEAANTAVLGGDI---FLATDLLQKAGNFREASK 1015 (1382)
Q Consensus 972 ~el~~~~~~~~~~~eaa~~~~~~g~~---~~~~~~l~~~~~~~~~~~ 1015 (1382)
.-|++.-..+|+|++|-+.+...+++ ..+++.....|+|+.|..
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~ 198 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQM 198 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHH
Confidence 55667777777777777777777777 666677777777777644
No 281
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.01 E-value=0.22 Score=65.07 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=26.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
+..+|.||||||||+++.++...+...+..++.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i 622 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 622 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 4799999999999999988888776655554443
No 282
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.93 E-value=0.16 Score=57.97 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 252 EPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 252 ~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+.+.+.+.. +. .++.+|.||||+|||+++..+...+
T Consensus 19 ~~el~~L~~-l~-------~~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 19 EKEIEKLKG-LR-------APITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp HHHHHHHHH-TC-------SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hc-------CCcEEEECCCCCCHHHHHHHHHHhc
Confidence 345556665 54 1799999999999999998776543
No 283
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.92 E-value=0.14 Score=56.30 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+.+..|.||||+||||++..+...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999998776554
No 284
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.92 E-value=0.16 Score=59.81 Aligned_cols=36 Identities=25% Similarity=0.435 Sum_probs=29.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCceEEe
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRI-KCRTLAC 305 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~-~~RILVc 305 (1382)
..++.+|.||+|+||||++..++..+-.. ..+|++.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 171 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEe
Confidence 36799999999999999999988877655 5677654
No 285
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.89 E-value=0.18 Score=57.38 Aligned_cols=36 Identities=25% Similarity=0.228 Sum_probs=31.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
..+..|.||+|+||||++..+...+...+.+|++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 457777899999999999999998888888988865
No 286
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.87 E-value=0.17 Score=70.64 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=36.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNV 310 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~ 310 (1382)
+....+|.||||||||+++.+++......+.+++..++.+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 36789999999999999999999999999999999888764
No 287
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.87 E-value=0.13 Score=54.33 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~ 293 (1382)
+.+..|.||||+||||++..+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999866543
No 288
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.84 E-value=0.13 Score=52.80 Aligned_cols=24 Identities=25% Similarity=0.162 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
.+.+|.||||+||||++..+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999987766554
No 289
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.82 E-value=0.14 Score=53.67 Aligned_cols=24 Identities=38% Similarity=0.396 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
....+|.|||||||||+...+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 457899999999999998776654
No 290
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=90.80 E-value=0.12 Score=54.72 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
..+.+|.||||+||||++..+...
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999998776654
No 291
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=90.79 E-value=0.41 Score=50.55 Aligned_cols=62 Identities=8% Similarity=0.032 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHH-HHHHHHHHHcCCceEEecCChHHHHHHH
Q 048652 250 LNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTV-SMLLFSLLRIKCRTLACTPTNVAITELA 316 (1382)
Q Consensus 250 LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI-~~li~~Ll~~~~RILVcAPTN~AVDeVa 316 (1382)
=+.+|..|+...+.. .+++.+|+|+-||+||+.. ..++..--..|.+|.++||+..+-.++.
T Consensus 35 ~~~~~~~a~~~l~~s-----~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~ 97 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQD-----RPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMK 97 (189)
T ss_dssp CHHHHHHHHHHHHHH-----SCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHS
T ss_pred cCccchhHHHHHhcc-----CCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHH
Confidence 347899999988874 5789999999999999995 4444444456899999999998877543
No 292
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.78 E-value=0.11 Score=55.27 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+.+|.||||+||||++..+...+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5689999999999999987766544
No 293
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.77 E-value=0.19 Score=58.40 Aligned_cols=37 Identities=22% Similarity=0.139 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
...+..|.||||+||||++..++..+...+.+|.+.+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 4678999999999999999998888777777877765
No 294
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=90.76 E-value=0.15 Score=63.89 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
....+|+|||||||||++..+...+
T Consensus 60 g~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 60 KRHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCEEEEEeCCCCCHHHHHHHHhccC
Confidence 5789999999999999987766544
No 295
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.75 E-value=0.28 Score=53.63 Aligned_cols=39 Identities=26% Similarity=0.420 Sum_probs=29.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe-cCChH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC-TPTNV 310 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc-APTN~ 310 (1382)
..+.+|.||||+||||.+..+...+-. +..++.. -|...
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~~~ 65 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGGV 65 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTTTC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCCCC
Confidence 568899999999999999888877765 6666544 34443
No 296
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.75 E-value=0.14 Score=55.24 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+.+.+|.||||+||||++..+...+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999987765544
No 297
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.72 E-value=0.21 Score=64.30 Aligned_cols=42 Identities=24% Similarity=0.369 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH
Q 048652 252 EPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR 297 (1382)
Q Consensus 252 ~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~ 297 (1382)
+.+.+.+...+.. ......+|.||||||||+++..+...+..
T Consensus 192 ~~~i~~l~~~l~~----~~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 192 EKELERAIQVLCR----RRKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp HHHHHHHHHHHTS----SSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----cCCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3444445544442 34567899999999999999988887754
No 298
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.71 E-value=0.17 Score=60.65 Aligned_cols=36 Identities=25% Similarity=0.228 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
+.+.+|.||+|+||||++..+...+...+.+|+++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 457788899999999999999999988888988765
No 299
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.68 E-value=0.14 Score=55.70 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+..+.+|-||||+||||....+...+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 36788999999999999887666544
No 300
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=90.68 E-value=0.15 Score=58.56 Aligned_cols=49 Identities=16% Similarity=0.076 Sum_probs=35.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH------------HcC----CceEEecCChHH-HHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLL------------RIK----CRTLACTPTNVA-ITELASRA 319 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll------------~~~----~RILVcAPTN~A-VDeVa~RL 319 (1382)
..+.+|.||||+|||+++..++.... ..+ .+++.++..+.. ...+..++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~ 163 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMA 163 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHH
Confidence 57999999999999999998887642 123 678877766542 44444444
No 301
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.67 E-value=0.12 Score=54.11 Aligned_cols=22 Identities=32% Similarity=0.438 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~ 293 (1382)
.+.+|.||||+||||++..+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4788999999999999988753
No 302
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.66 E-value=0.11 Score=55.59 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.1
Q ss_pred EEEEcCCCCchHHHHHHHHHH
Q 048652 274 ELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 274 ~LI~GPPGTGKTttI~~li~~ 294 (1382)
.+|.||||+||||++..+...
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999998766543
No 303
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.66 E-value=0.14 Score=54.09 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
..+..|.||+|+||||++..+...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 568999999999999998776544
No 304
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.62 E-value=0.2 Score=58.40 Aligned_cols=37 Identities=19% Similarity=0.104 Sum_probs=32.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecC
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTP 307 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAP 307 (1382)
..+..|.||||+||||++-.++..+...+.+|.|.+.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~ 110 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAV 110 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEee
Confidence 5689999999999999999999988887888777663
No 305
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.58 E-value=0.21 Score=53.53 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=27.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHH-HcCCceEEec
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLL-RIKCRTLACT 306 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll-~~~~RILVcA 306 (1382)
.+.+.+|.||||+||||++..+...+- ..|.++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 356889999999999999888776665 4455555443
No 306
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.58 E-value=0.076 Score=56.58 Aligned_cols=33 Identities=18% Similarity=0.040 Sum_probs=25.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
+..|.||||+||||++..+...+-..+.++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~ 34 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 578999999999999988887775555555443
No 307
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.58 E-value=0.22 Score=53.17 Aligned_cols=36 Identities=17% Similarity=0.031 Sum_probs=28.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
+.+..+|.|+||+||||++..++..+... .++.++.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~ 64 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAML 64 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEe
Confidence 35789999999999999999988887544 5555543
No 308
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.56 E-value=0.21 Score=60.80 Aligned_cols=46 Identities=26% Similarity=0.205 Sum_probs=35.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe-cCCh--HHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC-TPTN--VAITEL 315 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc-APTN--~AVDeV 315 (1382)
.+.+..|.||.|+||||++..+...+-..+.+|++. ..+. .|++++
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL 340 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQL 340 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHH
Confidence 356899999999999999999888777778888886 3332 245544
No 309
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.56 E-value=0.18 Score=61.92 Aligned_cols=48 Identities=10% Similarity=0.239 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEE
Q 048652 250 LNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLA 304 (1382)
Q Consensus 250 LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILV 304 (1382)
+++.+..-+..++.. ....+|.||+|+||||++.+++.. +....++++
T Consensus 245 ~~~~~l~~l~~~v~~------g~~i~I~GptGSGKTTlL~aL~~~-i~~~~giit 292 (511)
T 2oap_1 245 VPSGVLAYLWLAIEH------KFSAIVVGETASGKTTTLNAIMMF-IPPDAKVVS 292 (511)
T ss_dssp SCHHHHHHHHHHHHT------TCCEEEEESTTSSHHHHHHHHGGG-SCTTCCEEE
T ss_pred CCHHHHHHHHHHHhC------CCEEEEECCCCCCHHHHHHHHHhh-CCCCCCEEE
Confidence 666676677766663 567999999999999999876543 344444443
No 310
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.55 E-value=0.2 Score=56.07 Aligned_cols=36 Identities=25% Similarity=0.435 Sum_probs=28.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHc-CCceEEe
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRI-KCRTLAC 305 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~-~~RILVc 305 (1382)
..++.+|.||.|+||||++..++..+-.. ..+|++.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 60 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc
Confidence 46799999999999999999887766544 5666654
No 311
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=90.53 E-value=0.22 Score=62.20 Aligned_cols=39 Identities=21% Similarity=0.123 Sum_probs=35.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCC
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPT 308 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPT 308 (1382)
...+.++.|.+|+||||+.+.+...+...|.|||++.--
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D 45 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 357899999999999999999999999999999997644
No 312
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.49 E-value=0.17 Score=55.21 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
....+|.|||||||||++..+...+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999987776654
No 313
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=90.47 E-value=0.65 Score=58.84 Aligned_cols=77 Identities=21% Similarity=0.122 Sum_probs=60.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHH
Q 048652 243 GPSLSSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 243 ~~~~~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l 322 (1382)
.....+..|..|..|+...+..+... ....++.|.+|+|||.+++.++..+ +..+||++|+..-+.++.+-|...
T Consensus 6 ~~~~~~~p~~~Q~~~i~~l~~~~~~~--~~~~~l~g~~gs~k~~~~a~~~~~~---~~~~lvv~~~~~~A~~l~~el~~~ 80 (661)
T 2d7d_A 6 ELVSKYQPQGDQPKAIEKLVKGIQEG--KKHQTLLGATGTGKTFTVSNLIKEV---NKPTLVIAHNKTLAGQLYSEFKEF 80 (661)
T ss_dssp CCCCSCCCCTTHHHHHHHHHHHHHTT--CSEEEEEECTTSCHHHHHHHHHHHH---CCCEEEECSSHHHHHHHHHHHHHH
T ss_pred eeecCCCCCCCCHHHHHHHHHHHhcC--CCcEEEECcCCcHHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHHHHHHH
Confidence 34456788899999998776654332 2345788999999999998877654 668999999999999999988876
Q ss_pred hh
Q 048652 323 VK 324 (1382)
Q Consensus 323 ~~ 324 (1382)
..
T Consensus 81 ~~ 82 (661)
T 2d7d_A 81 FP 82 (661)
T ss_dssp CT
T ss_pred cC
Confidence 53
No 314
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.46 E-value=0.2 Score=57.71 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=33.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCC
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPT 308 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPT 308 (1382)
.+.++.|.+|+||||+.+++...+...|.|||++..-
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D 51 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTD 51 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 5888889999999999999999999999999997753
No 315
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=90.46 E-value=0.11 Score=63.56 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=19.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~L 295 (1382)
-.+|.||||||||+++.++...+
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999998776543
No 316
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=90.41 E-value=0.2 Score=59.98 Aligned_cols=42 Identities=24% Similarity=0.239 Sum_probs=38.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAI 312 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AV 312 (1382)
..+.+|.||||+|||+++..++..++..+.+++|.=|.....
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDML 94 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchh
Confidence 478999999999999999999999999999999999988664
No 317
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=90.23 E-value=0.15 Score=55.01 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
.-..+|.||||+||||++..+...+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3467889999999999987776655
No 318
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=90.21 E-value=0.13 Score=55.70 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
..+.+|.||||+||||++..+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999998766554
No 319
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.12 E-value=0.36 Score=52.75 Aligned_cols=46 Identities=22% Similarity=0.147 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHH-cCCceEE--ecCChHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLR-IKCRTLA--CTPTNVAITEL 315 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~-~~~RILV--cAPTN~AVDeV 315 (1382)
.+.+..|.||+|+||||.+..+...|-. .+.++.+ --|+...+.+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ 68 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNES 68 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHH
Confidence 3568889999999999999999998887 7877765 35776655443
No 320
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.10 E-value=0.18 Score=59.57 Aligned_cols=25 Identities=36% Similarity=0.282 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
.+.+.+|.|||||||||++..+...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3569999999999999999887764
No 321
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=90.07 E-value=0.17 Score=54.06 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=22.6
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHHH
Q 048652 269 HKSGVELRWGPPGTGKTKTVSMLLFSLL 296 (1382)
Q Consensus 269 ~~~~~~LI~GPPGTGKTttI~~li~~Ll 296 (1382)
+...+..|.||+|+||||++..+...+-
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4466899999999999999877666554
No 322
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=89.99 E-value=0.23 Score=57.68 Aligned_cols=38 Identities=18% Similarity=0.162 Sum_probs=31.6
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 269 HKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 269 ~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
.+..+..|.||||+||||++..++..+...+.++.+++
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34568889999999999999999888877777777654
No 323
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.98 E-value=0.18 Score=55.64 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+-..+|.||||+||||++..+...+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999987776544
No 324
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.95 E-value=0.18 Score=51.50 Aligned_cols=23 Identities=30% Similarity=0.135 Sum_probs=18.6
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+|.||||+||||++..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999987765544
No 325
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.94 E-value=0.17 Score=54.85 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=19.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+.+|.||||+||||++..+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999987776655
No 326
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.92 E-value=0.14 Score=53.96 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+.+.+|.||||+||||++..+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999998776655
No 327
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=89.82 E-value=0.19 Score=52.55 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
..+..|.||+|+||||++..+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 568999999999999998776654
No 328
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.81 E-value=0.31 Score=60.00 Aligned_cols=41 Identities=29% Similarity=0.259 Sum_probs=34.3
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNV 310 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~ 310 (1382)
...+.+|.||||+||||++..++..+...+.+++..++.+.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~ 320 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES 320 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 36799999999999999999988877777778877776654
No 329
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.80 E-value=0.12 Score=66.54 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=23.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
+.-.|+.||||||||+++.++...+ +..++.+.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~ 270 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANET---GAFFFLIN 270 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEE
Confidence 4458999999999999987766433 45555443
No 330
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.78 E-value=0.32 Score=54.39 Aligned_cols=78 Identities=14% Similarity=0.094 Sum_probs=51.1
Q ss_pred eccCcccccccccccchhhhcc-----cccccchHhhcCcccc-CChHHHHHhHHHHHHHHHhcCCChhhhhHhhchhh-
Q 048652 892 YKPKYEKTTLCYDKDGETYWEG-----RSTATDRKAAADPMCS-SNPKEVKFNLQEAAEIFAAIGMPDSAVRCFNDLEK- 964 (1382)
Q Consensus 892 ~~~~~~~~~~cf~~ag~~~~~~-----~a~a~~l~~~a~~~~~-~~~~~~~~~~~~aa~~fe~~~~~~~aa~c~~~~~~- 964 (1382)
...+|+.|..||++|-+.+... .+.++ ...+..... .+.+.|...|++|.+++.+.|....+|.+|..++.
T Consensus 49 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~--~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTY--VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHH--HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3578899999998887664321 12222 223333333 36778888888888888888888888887777666
Q ss_pred HHhh-hch
Q 048652 965 YERA-GRF 971 (1382)
Q Consensus 965 y~~a-~~~ 971 (1382)
|.+. |++
T Consensus 127 ~~~~lg~~ 134 (292)
T 1qqe_A 127 LENDLHDY 134 (292)
T ss_dssp HHHTTCCH
T ss_pred HHHhhcCH
Confidence 5543 555
No 331
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=89.65 E-value=0.89 Score=56.79 Aligned_cols=72 Identities=13% Similarity=0.056 Sum_probs=57.0
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc--CCceEEecCChHHHHHHHHHHHHHhh
Q 048652 247 SSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI--KCRTLACTPTNVAITELASRALRLVK 324 (1382)
Q Consensus 247 ~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~--~~RILVcAPTN~AVDeVa~RL~~l~~ 324 (1382)
...|++-|+..+... .. ....+|.+|.|+|||++++..+...+.. +.+|+++|+|...+.++..++...+.
T Consensus 161 ~~~l~p~Q~~i~~~l-~~------~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIM-SS------KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp BCCCCHHHHHHHHHH-HH------CSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cCcCCHHHHHHHHhh-cc------ccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 357999998877654 21 4679999999999999998777665543 45899999999999988888776654
Q ss_pred h
Q 048652 325 E 325 (1382)
Q Consensus 325 e 325 (1382)
.
T Consensus 234 ~ 234 (592)
T 3cpe_A 234 L 234 (592)
T ss_dssp T
T ss_pred h
Confidence 4
No 332
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.52 E-value=0.29 Score=56.76 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=34.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCC
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPT 308 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPT 308 (1382)
..+.++.|-+|+||||+.+.+...+...|.|||++.--
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 57899999999999999999999999999999997743
No 333
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=89.52 E-value=0.35 Score=61.48 Aligned_cols=76 Identities=16% Similarity=0.032 Sum_probs=60.0
Q ss_pred HHhHHHHHHHHHhcCCChhhhhHhhchhhHHhhhch----------HHHHhhHhhccChhHHHHHhhhcCchHHHhHHHH
Q 048652 936 KFNLQEAAEIFAAIGMPDSAVRCFNDLEKYERAGRF----------DELMMLEEGSGNFMEAANTAVLGGDIFLATDLLQ 1005 (1382)
Q Consensus 936 ~~~~~~aa~~fe~~~~~~~aa~c~~~~~~y~~a~~~----------~el~~~~~~~~~~~eaa~~~~~~g~~~~~~~~l~ 1005 (1382)
...+..|.+||..+|++++++.+|...++.++..++ ++-..+...+|++++|.+++...|+.-+|+.+-.
T Consensus 694 ~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp TTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHH
Confidence 556889999999999999999999887776554444 3333344568999999999999999999999888
Q ss_pred HhcCch
Q 048652 1006 KAGNFR 1011 (1382)
Q Consensus 1006 ~~~~~~ 1011 (1382)
+-+..+
T Consensus 774 ~~~~~~ 779 (814)
T 3mkq_A 774 TYGLGD 779 (814)
T ss_dssp HTTCCH
T ss_pred HhCCCh
Confidence 877666
No 334
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.46 E-value=0.17 Score=53.55 Aligned_cols=49 Identities=18% Similarity=0.187 Sum_probs=32.1
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHHhhh
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRLVKE 325 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l~~e 325 (1382)
+.+|.||||+|||+.+..++.. +.+++.+|.....-+++..|+......
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~e~~~rI~~h~~~ 49 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDDEMAARIQHHKDG 49 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC------CHHHHHHHT
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence 3689999999999998876643 556666666555567899998876544
No 335
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.41 E-value=0.15 Score=54.63 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLL 296 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll 296 (1382)
..+..|.||||+||||++..++..+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57999999999999999988776544
No 336
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.37 E-value=0.3 Score=53.11 Aligned_cols=40 Identities=18% Similarity=0.100 Sum_probs=34.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCCh
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTN 309 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN 309 (1382)
+..+.+|.||.|+||||.+..++..+...+.++++..|.-
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 3679999999999999988888888888899999998865
No 337
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.22 E-value=0.19 Score=53.85 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=18.5
Q ss_pred EEEEcCCCCchHHHHHHHHHHH
Q 048652 274 ELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 274 ~LI~GPPGTGKTttI~~li~~L 295 (1382)
.+|.||||+||||++..+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999987776655
No 338
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.14 E-value=0.22 Score=53.74 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~ 294 (1382)
+.+|-||||+||||....+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3578899999999987665543
No 339
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.11 E-value=0.32 Score=55.20 Aligned_cols=35 Identities=29% Similarity=0.270 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
..+..|.|-+|+||||+.+.+...|...|.|||++
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 44666669999999999999999999999999986
No 340
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=89.01 E-value=0.24 Score=53.29 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
..+..|.||||+||||++..+...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999998766543
No 341
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=88.92 E-value=0.32 Score=56.72 Aligned_cols=39 Identities=23% Similarity=0.141 Sum_probs=34.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHH--HcCCceEEecCC
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLL--RIKCRTLACTPT 308 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll--~~~~RILVcAPT 308 (1382)
...+.++.|-+|+||||+.+.+...+. ..|.|||++.--
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 357999999999999999999999999 889999987653
No 342
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=88.84 E-value=0.37 Score=55.61 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=33.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecC
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTP 307 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAP 307 (1382)
..+.++.|.+|.||||+.+.+...|...|.|||++.-
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~ 55 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIST 55 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEEC
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 5688899999999999999999999999999999753
No 343
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.81 E-value=0.35 Score=62.23 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=20.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+..|++||||||||+++.++...+
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 368999999999999998776665
No 344
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=88.80 E-value=0.26 Score=66.22 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=78.7
Q ss_pred cccCCeeeeccCcccccccccccchhhhcccccccc----hHhhcCccccC-ChHH---------HHH------------
Q 048652 884 RSQRGKLCYKPKYEKTTLCYDKDGETYWEGRSTATD----RKAAADPMCSS-NPKE---------VKF------------ 937 (1382)
Q Consensus 884 ~~~~~k~~~~~~~~~~~~cf~~ag~~~~~~~a~a~~----l~~~a~~~~~~-~~~~---------~~~------------ 937 (1382)
.+-+-..+-.++|+.|..||.+|+ .+.++|.++- ..++.+...+. +++. .+.
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA~--ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~I 1276 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNVS--NFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHI 1276 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhh--HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 333445667778888888888885 4555555431 22222222221 2111 001
Q ss_pred -----hHHHHHHHHHhcCCChhhhhHhhchhhHHh--hhchHHHHhh--HhhccChhHHHHHhhhcCc------------
Q 048652 938 -----NLQEAAEIFAAIGMPDSAVRCFNDLEKYER--AGRFDELMML--EEGSGNFMEAANTAVLGGD------------ 996 (1382)
Q Consensus 938 -----~~~~aa~~fe~~~~~~~aa~c~~~~~~y~~--a~~~~el~~~--~~~~~~~~eaa~~~~~~g~------------ 996 (1382)
.+.+++..||+.|.++.|-+++..+=.-++ .|+++||..+ .+..|+.+|++..|...++
T Consensus 1277 iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~ 1356 (1630)
T 1xi4_A 1277 VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH 1356 (1630)
T ss_pred hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHH
Confidence 223333344444444444444422211112 1566777644 4888999999999999999
Q ss_pred -hHHHhHHHHHhcCchhHHHHHHHH
Q 048652 997 -IFLATDLLQKAGNFREASKLVLNF 1020 (1382)
Q Consensus 997 -~~~~~~~l~~~~~~~~~~~~~~~~ 1020 (1382)
..+++-||.+.|+|++|...+..|
T Consensus 1357 lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A 1357 LWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhc
Confidence 677889999999999999655443
No 345
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=88.75 E-value=0.16 Score=52.81 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCCchHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSM 290 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~ 290 (1382)
..+..|.||+|+||||++..
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 57999999999999999976
No 346
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=88.72 E-value=0.47 Score=50.84 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=25.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEE
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLA 304 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILV 304 (1382)
....+|.|+||+||||++..++..+... .++.+
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~ 70 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIAC 70 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEE
Confidence 4677888999999999999998887554 44433
No 347
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=88.57 E-value=0.38 Score=57.18 Aligned_cols=39 Identities=15% Similarity=0.118 Sum_probs=28.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHH------cCCceEEecCC
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLR------IKCRTLACTPT 308 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~------~~~RILVcAPT 308 (1382)
...+++|.||||+||||++..++...+. .+.+++.+...
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 3679999999999999999887665543 23556655543
No 348
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=88.48 E-value=0.22 Score=52.85 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~ 293 (1382)
+..|.||||+||||++..+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999866643
No 349
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=88.34 E-value=0.24 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
.+..|.||+|+||||++..+...+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578899999999999987765443
No 350
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.23 E-value=0.29 Score=49.87 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=23.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLR 297 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~ 297 (1382)
+++.+|.||.|+|||+++-++...|..
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHcC
Confidence 579999999999999999998877643
No 351
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=88.22 E-value=0.26 Score=52.43 Aligned_cols=22 Identities=23% Similarity=0.076 Sum_probs=18.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li 292 (1382)
..+..|.||||+||||++..+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~ 42 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQ 42 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578899999999999876554
No 352
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=88.18 E-value=0.65 Score=62.62 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCCChhhhhHhh-chhhHHhhhch
Q 048652 938 NLQEAAEIFAAIGMPDSAVRCFN-DLEKYERAGRF 971 (1382)
Q Consensus 938 ~~~~aa~~fe~~~~~~~aa~c~~-~~~~y~~a~~~ 971 (1382)
.|.||++||++.+.+.+|+..+. ..|+|+||..+
T Consensus 1064 lyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~ 1098 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEF 1098 (1630)
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHH
Confidence 45666666666666666644444 56666666555
No 353
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=88.06 E-value=0.25 Score=53.60 Aligned_cols=33 Identities=21% Similarity=0.200 Sum_probs=29.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
+.+ .|-+|+||||+.+.+...|...|.|||++-
T Consensus 3 I~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 344 899999999999999999999999999863
No 354
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=87.91 E-value=1.7 Score=51.29 Aligned_cols=72 Identities=13% Similarity=0.033 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHH--cCCceEEecCChHHHHHHHHHHHHHhh
Q 048652 247 SSTLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLR--IKCRTLACTPTNVAITELASRALRLVK 324 (1382)
Q Consensus 247 ~~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~--~~~RILVcAPTN~AVDeVa~RL~~l~~ 324 (1382)
...|++-|+..+...-. ....+|..|-+.|||++++.++.+.+. .+.+|+++|||...+.++..++..++.
T Consensus 161 p~~L~p~Qk~il~~l~~-------~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 161 KVQLRDYQRDMLKIMSS-------KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp ECCCCHHHHHHHHHHHH-------SSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhhcc-------CcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 35799999887764422 467999999999999999888776443 357899999999998988888877765
Q ss_pred h
Q 048652 325 E 325 (1382)
Q Consensus 325 e 325 (1382)
.
T Consensus 234 ~ 234 (385)
T 2o0j_A 234 L 234 (385)
T ss_dssp H
T ss_pred h
Confidence 4
No 355
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=87.80 E-value=0.42 Score=52.47 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=35.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCCh
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTN 309 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN 309 (1382)
..+.++.||.|+||||.+..++......+.++++..|.-
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC
Confidence 568999999999999999999999999999999998764
No 356
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=87.69 E-value=0.49 Score=55.18 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=20.5
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
.....+|.||||+||||++..+...+
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34458999999999999987766544
No 357
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.60 E-value=0.36 Score=66.67 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=36.0
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVA 311 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~A 311 (1382)
...+.+|.||||+|||+++..++......+.+++.++.-...
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~ 423 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 423 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 467999999999999999999999998888888887765543
No 358
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.47 E-value=0.35 Score=66.81 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNV 310 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~ 310 (1382)
...+.+|.||||+|||+++..++..+...+.+++..+.-..
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees 771 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 771 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccch
Confidence 46799999999999999999999999888888888776544
No 359
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=87.39 E-value=0.17 Score=63.31 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=16.6
Q ss_pred eEEEEcCCCCchHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSML 291 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~l 291 (1382)
..|+.||||||||+++..+
T Consensus 329 ~vLL~GppGtGKT~LAr~l 347 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFI 347 (595)
T ss_dssp CEEEEESSCCTHHHHHHSS
T ss_pred ceEEECCCchHHHHHHHHH
Confidence 7999999999999987554
No 360
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=87.38 E-value=0.43 Score=52.75 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=28.5
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 274 ELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 274 ~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
..|.|.+|+||||+.+.+...|...|.|||++
T Consensus 4 I~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 44478999999999999999999999999984
No 361
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=87.30 E-value=0.32 Score=51.71 Aligned_cols=25 Identities=28% Similarity=0.114 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+..|.||+|+||||++..+...+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999987665443
No 362
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=87.30 E-value=0.39 Score=54.95 Aligned_cols=32 Identities=31% Similarity=0.389 Sum_probs=25.8
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEE
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLA 304 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILV 304 (1382)
......|.||+|+||||++..+...+ ..+|+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~ 156 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLS 156 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH---TCEEEC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc---CceEEE
Confidence 36799999999999999998877766 556643
No 363
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=87.28 E-value=0.34 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=17.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~ 293 (1382)
.+.+|.||+|+||||++..++.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999765543
No 364
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=87.26 E-value=0.33 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=20.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+..|.||+|+||||++..+...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4688999999999999998776543
No 365
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.21 E-value=0.38 Score=50.79 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=19.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
++..|.||||+||||+...+...+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 378999999999999987665444
No 366
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=87.20 E-value=0.4 Score=53.14 Aligned_cols=41 Identities=15% Similarity=0.046 Sum_probs=31.0
Q ss_pred CCeEEE-EcCCCCchHHHHHHHHHHHHHcCCceEEe--cCChHHH
Q 048652 271 SGVELR-WGPPGTGKTKTVSMLLFSLLRIKCRTLAC--TPTNVAI 312 (1382)
Q Consensus 271 ~~~~LI-~GPPGTGKTttI~~li~~Ll~~~~RILVc--APTN~AV 312 (1382)
..+..| .|-+|+||||+.+.+...|. .|.|||++ -|.+.+.
T Consensus 27 ~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~~~~ 70 (267)
T 3k9g_A 27 PKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASIT 70 (267)
T ss_dssp CEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTCHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCCCHH
Confidence 345555 45599999999999999999 99999985 4444333
No 367
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=87.08 E-value=0.87 Score=48.56 Aligned_cols=46 Identities=17% Similarity=0.170 Sum_probs=35.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe-cCChHHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC-TPTNVAITELASR 318 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc-APTN~AVDeVa~R 318 (1382)
+..|-|+.|+||||.+..+...|-..|.+++++ =|+.+.+.+...+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~ 48 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRK 48 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHH
Confidence 356889999999999999999999998887665 4666555444333
No 368
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=87.08 E-value=0.48 Score=53.20 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=29.2
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
+..|.|-+|+||||+.+.+...|...|.|||++
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 344579999999999999999999999999985
No 369
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.07 E-value=0.2 Score=64.48 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=18.1
Q ss_pred CeEEEEcCCCCchHHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
.-.|+.||||||||.++.++...
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHT
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 34789999999999887665544
No 370
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=86.94 E-value=0.54 Score=51.81 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=30.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
-+.++.|-+|+||||+.+.+...|...+.|||++-
T Consensus 4 ~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 4 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 35666778999999999999999999999999863
No 371
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.91 E-value=0.21 Score=64.77 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
....++.||||||||+++.++...+
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred CceeEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999987776554
No 372
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=86.85 E-value=0.38 Score=51.07 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSLL 296 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~Ll 296 (1382)
.+..|.||+|+||||++..+...+-
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4678999999999999988776665
No 373
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.71 E-value=0.4 Score=52.74 Aligned_cols=25 Identities=40% Similarity=0.347 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+-+..|.||||+||||+...+...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999887765544
No 374
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=86.65 E-value=0.71 Score=52.67 Aligned_cols=36 Identities=19% Similarity=0.021 Sum_probs=25.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHH--HcCCceEEe
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLL--RIKCRTLAC 305 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll--~~~~RILVc 305 (1382)
...+..|.||+|+||||++..+...+- ..+..|.++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi 116 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELI 116 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEE
Confidence 456899999999999999876655443 234456553
No 375
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=86.64 E-value=0.31 Score=51.52 Aligned_cols=21 Identities=24% Similarity=0.102 Sum_probs=17.8
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~ 293 (1382)
...|.||||+||||++..+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 578999999999999876654
No 376
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=86.64 E-value=0.33 Score=53.60 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~ 293 (1382)
.-+..|.||||+||||+...+..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999998765544
No 377
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=86.59 E-value=0.55 Score=54.82 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=34.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH--HcCCceEEecCC
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLL--RIKCRTLACTPT 308 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll--~~~~RILVcAPT 308 (1382)
..+.++.|-+|.||||+.+.+...|. ..|.|||++..-
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D 57 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTD 57 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 46888899999999999999999999 889999997654
No 378
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=86.57 E-value=0.78 Score=51.60 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=30.8
Q ss_pred CeEEEE---cCCCCchHHHHHHHHHHHHHcCCceEE--ecCCh
Q 048652 272 GVELRW---GPPGTGKTKTVSMLLFSLLRIKCRTLA--CTPTN 309 (1382)
Q Consensus 272 ~~~LI~---GPPGTGKTttI~~li~~Ll~~~~RILV--cAPTN 309 (1382)
.+..|. +-+|+||||+.+.+...|...|.|||+ +-|..
T Consensus 35 ~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 35 EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 455555 489999999999999999999999998 44444
No 379
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=86.57 E-value=0.26 Score=63.88 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=20.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
.+...+|.||||||||+++.++...
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3557999999999999988776443
No 380
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=86.53 E-value=0.52 Score=51.63 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=28.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
+.+..+-+|+||||+.+.+...|...|.|||++
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (260)
T 3q9l_A 5 IVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (260)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 344455599999999999999999999999985
No 381
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=86.49 E-value=0.52 Score=52.22 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=29.7
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
-+.+..|-+|+||||+.+.+...|...|.|||++=
T Consensus 20 vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 20 RIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp EEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35555666999999999999999999999999953
No 382
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=86.46 E-value=0.36 Score=51.38 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=20.7
Q ss_pred CCCCCeEEEEcCCCCchHHHHHHHHHH
Q 048652 268 DHKSGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 268 ~~~~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
+|..-+..|.|||||||||+...+...
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHh
Confidence 355567889999999999998666543
No 383
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.44 E-value=0.37 Score=49.94 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLL 296 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll 296 (1382)
+++.+|.||.|+||||++-++...|-
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 46999999999999999988776653
No 384
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=86.41 E-value=0.47 Score=49.92 Aligned_cols=34 Identities=21% Similarity=0.104 Sum_probs=28.7
Q ss_pred EEEE-cCCCCchHHHHHHHHHHHHHcCCceEEecC
Q 048652 274 ELRW-GPPGTGKTKTVSMLLFSLLRIKCRTLACTP 307 (1382)
Q Consensus 274 ~LI~-GPPGTGKTttI~~li~~Ll~~~~RILVcAP 307 (1382)
..|. +-+|+||||+...+...|...|.|||++-.
T Consensus 4 i~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~ 38 (206)
T 4dzz_A 4 ISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDT 38 (206)
T ss_dssp EEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 4444 559999999999999999999999998743
No 385
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=86.30 E-value=0.34 Score=54.63 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCchHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~ 293 (1382)
.+.+|.||||+||||++..+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999877665
No 386
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=86.26 E-value=0.41 Score=51.25 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLR 297 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~ 297 (1382)
+++.+|.||.|+|||+++-++.+.|-.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 579999999999999999998887765
No 387
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=86.22 E-value=0.56 Score=50.65 Aligned_cols=34 Identities=29% Similarity=0.309 Sum_probs=28.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
+.+..+-+|+||||+...+...|...+.|||++-
T Consensus 5 i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (237)
T 1g3q_A 5 ISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4445566999999999999999999999999873
No 388
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=86.12 E-value=0.7 Score=49.48 Aligned_cols=34 Identities=21% Similarity=0.061 Sum_probs=28.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
+.+..+-+|+||||+...+...|.+.|.|||++=
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 4445555999999999999999999999999853
No 389
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=86.04 E-value=0.39 Score=50.46 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=19.2
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~ 293 (1382)
++.+..|.||||+||||+...+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356789999999999998765543
No 390
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.02 E-value=0.68 Score=49.92 Aligned_cols=37 Identities=24% Similarity=0.170 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHH
Q 048652 250 LNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 250 LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~ 293 (1382)
-+-.|..++... .. ..+..|.||.|+||||++..+..
T Consensus 8 k~~g~~~~l~~i-~~------Ge~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 8 KTLGQKHYVDAI-DT------NTIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp CSHHHHHHHHHH-HH------CSEEEEECCTTSSTTHHHHHHHH
T ss_pred CCHhHHHHHHhc-cC------CCEEEEECCCCCCHHHHHHHHhc
Confidence 344666676664 32 67999999999999999866543
No 391
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=85.88 E-value=0.3 Score=52.94 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCCchHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li 292 (1382)
..+..|.||+|+||||++..+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999997766
No 392
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=85.87 E-value=0.53 Score=52.61 Aligned_cols=50 Identities=8% Similarity=-0.051 Sum_probs=40.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALR 321 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~ 321 (1382)
....||.|+||||||++....+..-+.++.+.++++..- ...++..+...
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e-~~~~l~~~~~~ 70 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISY-PLQLIIRILSR 70 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSS-CHHHHHHHHHH
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeC-CHHHHHHHHHH
Confidence 578999999999999888999999999999999999854 44455555544
No 393
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=85.57 E-value=0.5 Score=50.63 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
..+.+|.||+|+||||++..++..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 568999999999999998776543
No 394
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.55 E-value=0.5 Score=66.09 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=33.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCCh
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTN 309 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN 309 (1382)
...+.+|.||||+|||+++..++......+.+++..+.-.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~ 421 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 421 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 3679999999999999999999999887766666655443
No 395
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=85.53 E-value=0.36 Score=56.31 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+..|.||||+||||++..++..+
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998776654
No 396
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.26 E-value=0.43 Score=51.27 Aligned_cols=25 Identities=28% Similarity=0.154 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
....+|.||||+|||+++..++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999987766543
No 397
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=85.09 E-value=0.81 Score=52.74 Aligned_cols=24 Identities=25% Similarity=0.106 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
-+..|.||+|+||||++..+...+
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999986654433
No 398
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.08 E-value=0.38 Score=55.44 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
.+.+|.||||+||||+...+...+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999987766543
No 399
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=85.06 E-value=0.73 Score=49.37 Aligned_cols=32 Identities=28% Similarity=0.134 Sum_probs=28.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
+.+..+-+|+||||+...+...|...| |||++
T Consensus 3 I~v~s~KGGvGKTT~a~~LA~~la~~g-~Vlli 34 (209)
T 3cwq_A 3 ITVASFKGGVGKTTTAVHLSAYLALQG-ETLLI 34 (209)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEE
Confidence 455567799999999999999999999 99985
No 400
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=84.84 E-value=1.1 Score=47.98 Aligned_cols=44 Identities=23% Similarity=0.309 Sum_probs=31.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe-cCChHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC-TPTNVAITELA 316 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc-APTN~AVDeVa 316 (1382)
.+..|-|+.|+||||.+..+...|. .+.+++.+ =|+...+-+..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~eP~~t~~g~~i 47 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTREPGGVPTGEEI 47 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEESSTTCHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEeeCCCCChHHHHH
Confidence 4778999999999999988777774 56666554 46665554433
No 401
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=84.79 E-value=1.2 Score=48.42 Aligned_cols=42 Identities=26% Similarity=0.182 Sum_probs=30.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCC-hHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPT-NVAITE 314 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPT-N~AVDe 314 (1382)
..+.+|.||||+||||.+..+...|-. .-+++--|. .+.+-+
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~--~~~~~~ep~~~t~~g~ 47 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP--NCKLLKFPERSTRIGG 47 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS--SEEEEESSCTTSHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc--cceEEEecCCCChHHH
Confidence 568999999999999999888777744 234555663 444433
No 402
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=84.78 E-value=0.36 Score=57.66 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
.+.+.+|.||||+||||++..+...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999998776543
No 403
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=84.77 E-value=0.49 Score=51.10 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+..|.||.|+||||++..+...+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 6789999999999999998766543
No 404
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=84.71 E-value=0.71 Score=50.03 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=29.1
Q ss_pred CeEEEE-cCCCCchHHHHHHHHHHHHHc-CCceEEec
Q 048652 272 GVELRW-GPPGTGKTKTVSMLLFSLLRI-KCRTLACT 306 (1382)
Q Consensus 272 ~~~LI~-GPPGTGKTttI~~li~~Ll~~-~~RILVcA 306 (1382)
.+..|. +-+|+||||+.+.+...|... |.|||++-
T Consensus 5 ~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 5 RVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred eEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 344455 559999999999999999998 99999873
No 405
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=84.66 E-value=0.55 Score=53.30 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=21.9
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHHH
Q 048652 269 HKSGVELRWGPPGTGKTKTVSMLLFSLL 296 (1382)
Q Consensus 269 ~~~~~~LI~GPPGTGKTttI~~li~~Ll 296 (1382)
..+.+..|.||+|+||||++..+...+-
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456889999999999999876665553
No 406
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=84.49 E-value=0.55 Score=50.08 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+..|.||.|+||||++..+...+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 6799999999999999997765543
No 407
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=84.33 E-value=0.55 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
...+..|.||.|+||||++..+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4679999999999999998776543
No 408
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.26 E-value=0.76 Score=56.51 Aligned_cols=38 Identities=21% Similarity=0.154 Sum_probs=27.9
Q ss_pred CCeEEEEcCCCCchHHHHHHH-HHHHHHcCCceEEecCC
Q 048652 271 SGVELRWGPPGTGKTKTVSML-LFSLLRIKCRTLACTPT 308 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~l-i~~Ll~~~~RILVcAPT 308 (1382)
..+.+|.||||+||||++..+ +..++..+...+.++..
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 679999999999999999987 46666644434444333
No 409
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=84.19 E-value=0.59 Score=51.25 Aligned_cols=25 Identities=16% Similarity=0.075 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+..|.||.|+||||++..+...+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999987665444
No 410
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=84.03 E-value=0.49 Score=55.70 Aligned_cols=36 Identities=19% Similarity=0.032 Sum_probs=32.6
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecC
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTP 307 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAP 307 (1382)
.+.++.|..|+||||+.+.+...+...|.|||++.-
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 477899999999999999999999999999988765
No 411
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=83.96 E-value=0.58 Score=51.74 Aligned_cols=25 Identities=36% Similarity=0.341 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+..|.||+|+||||++..+...|
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999987765433
No 412
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=83.96 E-value=0.58 Score=48.22 Aligned_cols=32 Identities=19% Similarity=0.113 Sum_probs=25.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceE
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTL 303 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RIL 303 (1382)
..+..|.||.|+||||++..+...+ .....|.
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~ 64 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVK 64 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEE
Confidence 5689999999999999998887776 4444443
No 413
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=83.83 E-value=0.64 Score=51.61 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
.....|.||||+||||+...+...+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999987766544
No 414
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=83.82 E-value=0.61 Score=53.50 Aligned_cols=27 Identities=22% Similarity=0.075 Sum_probs=21.3
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 269 HKSGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 269 ~~~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+.+..|.||+|+||||++..+...+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345689999999999999987655443
No 415
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=83.65 E-value=0.73 Score=50.15 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
...+..|.||||+||||+...+...|
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34578999999999999887665433
No 416
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=83.29 E-value=0.56 Score=50.25 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=18.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li 292 (1382)
+-+..|.||||+||||++..+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999999886654
No 417
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=82.81 E-value=0.61 Score=52.55 Aligned_cols=22 Identities=27% Similarity=0.136 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li 292 (1382)
+-+..|.||||+||||++..+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999987665
No 418
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=82.57 E-value=0.87 Score=65.77 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=20.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFS 294 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~ 294 (1382)
....|+.||||||||.++..++..
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~ 1290 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRN 1290 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCeEEEECCCCCCHHHHHHHHHhc
Confidence 568999999999999998666554
No 419
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=82.52 E-value=0.85 Score=53.49 Aligned_cols=36 Identities=8% Similarity=0.014 Sum_probs=30.1
Q ss_pred CeEEEE-cCCCCchHHHHHHHHHHHHHcCCceEEecC
Q 048652 272 GVELRW-GPPGTGKTKTVSMLLFSLLRIKCRTLACTP 307 (1382)
Q Consensus 272 ~~~LI~-GPPGTGKTttI~~li~~Ll~~~~RILVcAP 307 (1382)
.+..|. |-+|+||||+++.+...|...|.|||++--
T Consensus 144 kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~ 180 (373)
T 3fkq_A 144 SVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNI 180 (373)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEEC
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 455555 569999999999999999999999998753
No 420
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=82.52 E-value=0.61 Score=53.52 Aligned_cols=37 Identities=22% Similarity=0.125 Sum_probs=29.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCCh
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTN 309 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN 309 (1382)
-++.+|.||-|+||||++..++... .+.||.|+.|.-
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~d~ 40 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIENEF 40 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECSSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEecC
Confidence 4689999999999999998766542 577888877653
No 421
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=82.38 E-value=0.68 Score=51.06 Aligned_cols=36 Identities=28% Similarity=0.124 Sum_probs=29.9
Q ss_pred CCeEEEE-cCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 271 SGVELRW-GPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 271 ~~~~LI~-GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
..+..|. +-+|+||||+.+.+...|...|.|||++=
T Consensus 6 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 6 VRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp CCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 3455555 56899999999999999999999999863
No 422
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=81.97 E-value=0.79 Score=52.97 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=24.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEE
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLA 304 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILV 304 (1382)
..+.+|.||.|+||||++..++..+-.....|.+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i 204 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 204 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEE
Confidence 6799999999999999987766544322333443
No 423
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=81.95 E-value=1.1 Score=55.61 Aligned_cols=40 Identities=23% Similarity=0.227 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHH
Q 048652 252 EPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 252 ~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~ 293 (1382)
+...+.+...+... ....++.+|+||||.|||+++..+..
T Consensus 130 ~~~l~~L~~~L~~~--~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 130 KKLVNAIQQKLSKL--KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp HHHHHHHHHHHTTS--TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcc--cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 44555666666521 23357999999999999999877643
No 424
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=81.94 E-value=0.84 Score=51.73 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCce
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRT 302 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RI 302 (1382)
..+..|.||+|+||||+...+...+-..+.++
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~ 36 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKA 36 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCe
Confidence 46889999999999999887766554334433
No 425
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C*
Probab=81.72 E-value=0.34 Score=65.09 Aligned_cols=77 Identities=13% Similarity=0.065 Sum_probs=51.9
Q ss_pred CCcEEEecccCCCCccccEEEEeecccCCC----CCccc--------cc-------CCCcceeecccccceEEEEechhh
Q 048652 772 GFTVKVKSVDGFQGGEEDIIIISTVRCNTG----GSIGF--------IS-------NPQRVNVALTRARHCLWILGNERT 832 (1382)
Q Consensus 772 ~~~v~V~TVD~fQG~E~DiVIlS~Vrsn~~----~~iGF--------l~-------d~rRLNVAlTRAK~~L~IVGn~~~ 832 (1382)
...|.|+|+|...|.|+|+|++..+..+.- ..-+| .. +++.++||+||||+.|+|......
T Consensus 656 ~~~V~l~Tlh~aKgLef~vVfllGlnEG~fP~~~~~~~~dll~~~l~~~dr~~~eEERrLfYvAltrA~~~L~LSy~~~~ 735 (1122)
T 1w36_C 656 AGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRS 735 (1122)
T ss_dssp SSSCEEECCCTTCCCCEEEEEEECCBTTTSSCCCCCCSSCHHHHSCCTTCCCHHHHHHHHHHHHHHHEEEEEEEEEECBC
T ss_pred CCeEEEeccccccCCCcCEEEEeCCCcccCCCCCCCCcHHHhhcccCCCchhhhHHHHHHHHHHHHhhcCeEEEEEeCCc
Confidence 467999999999999999999987654421 11123 11 234489999999999999865432
Q ss_pred ------hhcCccHHHHHHHHHHh
Q 048652 833 ------LISSESIWGTLVCDAKA 849 (1382)
Q Consensus 833 ------L~~s~~~W~~li~~~~~ 849 (1382)
... ..+...+..++..
T Consensus 736 ~~~g~~~~P-SrfL~eL~~~l~~ 757 (1122)
T 1w36_C 736 IQDNSERFP-SVLVQELIDYIGQ 757 (1122)
T ss_dssp SSSCCBCCB-CHHHHHHHHHHHT
T ss_pred CCCCCcCCC-CHHHHHHHHHHHH
Confidence 111 2455666665543
No 426
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=81.30 E-value=0.76 Score=52.66 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+.+.+|.||+|+|||+++..+...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4688999999999999988876554
No 427
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=81.08 E-value=0.98 Score=47.44 Aligned_cols=23 Identities=22% Similarity=0.081 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~ 293 (1382)
..-.+|.||+|+||||++.+++.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 44689999999999999877665
No 428
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=81.05 E-value=1.3 Score=55.39 Aligned_cols=36 Identities=19% Similarity=0.061 Sum_probs=28.6
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
++.+.+|.|+||+||||++..+...|...+..++.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 355789999999999999999888886666555443
No 429
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=81.02 E-value=1 Score=50.61 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=28.0
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
+.+..+-.|+||||+.+.+...|...|.|||++
T Consensus 7 I~v~s~KGGvGKTT~a~nLA~~La~~G~~Vlli 39 (286)
T 2xj4_A 7 IVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVI 39 (286)
T ss_dssp EEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 344455699999999999999999999999885
No 430
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=81.01 E-value=0.66 Score=54.25 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=28.9
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
+.+..+-+|+||||+.+.+...|...|.|||++
T Consensus 4 Iav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlI 36 (361)
T 3pg5_A 4 ISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYV 36 (361)
T ss_dssp EEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 445557799999999999999999999999995
No 431
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=80.96 E-value=0.82 Score=48.82 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=18.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~ 293 (1382)
+-+..|.||||+||||+...+..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999998766544
No 432
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=80.87 E-value=0.71 Score=50.41 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+.+..|.|++|+||||.+..+...|
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3578899999999999987766554
No 433
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=80.84 E-value=0.68 Score=53.13 Aligned_cols=25 Identities=40% Similarity=0.417 Sum_probs=21.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
+.+.+|.||+|+|||+++..+...+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4688999999999999988776554
No 434
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=80.83 E-value=0.88 Score=53.20 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+.+|.||.|+||||++..++..+
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 6799999999999999998876543
No 435
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=80.71 E-value=0.79 Score=53.21 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
.+.+|.||+|+||||++..+...+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 488999999999999987776654
No 436
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=80.54 E-value=1.8 Score=45.41 Aligned_cols=99 Identities=12% Similarity=-0.024 Sum_probs=63.9
Q ss_pred CcccccccccccchhhhcccccccchHhhcCccccCChHHHHHhHHHHHHHHHhcCCChhhhhHhhchhhHHhhhchHHH
Q 048652 895 KYEKTTLCYDKDGETYWEGRSTATDRKAAADPMCSSNPKEVKFNLQEAAEIFAAIGMPDSAVRCFNDLEKYERAGRFDEL 974 (1382)
Q Consensus 895 ~~~~~~~cf~~ag~~~~~~~a~a~~l~~~a~~~~~~~~~~~~~~~~~aa~~fe~~~~~~~aa~c~~~~~~y~~a~~~~el 974 (1382)
|+..|.+||.++|+--.- ..|- ....| ...+.+-|++=+.-|++.-|-.||+-+|++++|
T Consensus 49 n~~lAe~cy~~~~D~~~L-----~~Ly-----~~tg~----~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~------ 108 (177)
T 3mkq_B 49 NASLAEMIYQTQHSFDKL-----SFLY-----LVTGD----VNKLSKMQNIAQTREDFGSMLLNTFYNNSTKER------ 108 (177)
T ss_dssp CHHHHHHHHHHTTCHHHH-----HHHH-----HHHTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHH------
T ss_pred ChHHHHHHHHHhCCHHHH-----HHHH-----HHhCC----HHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHH------
Confidence 666677777777765211 1110 01112 234456666667777777777777777655544
Q ss_pred HhhHhhccChhHHHHHhhhcCchHHHhHHHHHhcCchhH
Q 048652 975 MMLEEGSGNFMEAANTAVLGGDIFLATDLLQKAGNFREA 1013 (1382)
Q Consensus 975 ~~~~~~~~~~~eaa~~~~~~g~~~~~~~~l~~~~~~~~~ 1013 (1382)
..+=.+.|++.||+-.++.-|--..|-+++..+|.-++.
T Consensus 109 i~lL~~~~r~~eA~~~A~t~g~~~~a~~~~~~~~~~~~~ 147 (177)
T 3mkq_B 109 SSIFAEGGSLPLAYAVAKANGDEAAASAFLEQAEVDEQD 147 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHCCChHHHHHHHHHcCcHHHHHHHHHHhCCcccc
Confidence 444477888888888888888888888888888866554
No 437
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=80.52 E-value=0.6 Score=54.09 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+.+|.||+|||||++...+...+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4589999999999999987766543
No 438
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=80.42 E-value=1 Score=47.82 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=19.9
Q ss_pred CCCeEEEEcCCCCchHHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li~ 293 (1382)
+..-.+|.||||+|||+++..++.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 356789999999999999877654
No 439
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=80.13 E-value=0.95 Score=52.33 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=24.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLR 297 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~ 297 (1382)
+++.+|.||.|+|||+++-++...|..
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~l~~ 49 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 589999999999999999998887764
No 440
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=79.80 E-value=1.6 Score=50.16 Aligned_cols=36 Identities=28% Similarity=0.253 Sum_probs=32.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
..+..|.|==|.|||||.+.+.++|...|+|||++=
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 458888999999999999999999999999999853
No 441
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=79.66 E-value=1.5 Score=54.63 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=33.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecC
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTP 307 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAP 307 (1382)
..+.++.|.||+||||+.+.+...+.+.|.++|++.-
T Consensus 327 ~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~ 363 (589)
T 1ihu_A 327 HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTS 363 (589)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeC
Confidence 4688889999999999999999999999999999743
No 442
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=79.64 E-value=1.1 Score=52.90 Aligned_cols=59 Identities=12% Similarity=0.028 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHhhc---ccCCCCC-eEEEEcCCCCchHHHHHHHHHHHHH------cCCceEEec
Q 048652 248 STLNEPQVGAVFACLRRL---DCDHKSG-VELRWGPPGTGKTKTVSMLLFSLLR------IKCRTLACT 306 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~---~~~~~~~-~~LI~GPPGTGKTttI~~li~~Ll~------~~~RILVcA 306 (1382)
+.++..|...+...+... ...+... +.++.|-+|+||||+.+.+...|.. .|.|||++=
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD 150 (398)
T 3ez2_A 82 YAMSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVID 150 (398)
T ss_dssp ECBCHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEE
T ss_pred ecCCHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEe
Confidence 445677777777665321 1111222 4555567999999999999999984 689998853
No 443
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=79.21 E-value=1.2 Score=53.00 Aligned_cols=23 Identities=22% Similarity=0.108 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~ 293 (1382)
.++..|.||+|+||||++..+..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 56999999999999999977654
No 444
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=79.16 E-value=1.9 Score=50.88 Aligned_cols=41 Identities=17% Similarity=0.073 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHc
Q 048652 254 QVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRI 298 (1382)
Q Consensus 254 Q~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~ 298 (1382)
-.+||...+. -.+..-.+|.||||+|||+++..+...+...
T Consensus 161 GiraID~~~p----i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 161 TARVLDLASP----IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp HHHHHHHHSC----CBTTCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred cceeeeeeee----ecCCcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 3455554433 2346789999999999999998877666544
No 445
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=79.05 E-value=1.2 Score=52.26 Aligned_cols=30 Identities=30% Similarity=0.515 Sum_probs=25.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCC
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKC 300 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~ 300 (1382)
.++.+|.||-|+||||++-++...+...+.
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~al~g~~~ 52 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFALFGNGI 52 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHSCCS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcCCcc
Confidence 469999999999999999888888765543
No 446
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=78.89 E-value=5.1 Score=45.90 Aligned_cols=162 Identities=12% Similarity=0.071 Sum_probs=92.4
Q ss_pred eeeeccCcccccccccccchhhhc-----ccccccchHhhcCccccCChHHHHHhHHHHHHHHHhcCC-Chhhhh-----
Q 048652 889 KLCYKPKYEKTTLCYDKDGETYWE-----GRSTATDRKAAADPMCSSNPKEVKFNLQEAAEIFAAIGM-PDSAVR----- 957 (1382)
Q Consensus 889 k~~~~~~~~~~~~cf~~ag~~~~~-----~~a~a~~l~~~a~~~~~~~~~~~~~~~~~aa~~fe~~~~-~~~aa~----- 957 (1382)
-.+..++|+.|..+|++|-..... ..|.++...+.+- ....+.+.|..+|.+|.++|+..+. ....+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESY-YYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 345567888888888777443211 2333433323222 2245668889999999999999987 444444
Q ss_pred --HhhchhhHHhhhch-HHHHhhHhhccC-------hhHHHHHhhhcCchHHHhHHHHHhcC--------chhHHHHHHH
Q 048652 958 --CFNDLEKYERAGRF-DELMMLEEGSGN-------FMEAANTAVLGGDIFLATDLLQKAGN--------FREASKLVLN 1019 (1382)
Q Consensus 958 --c~~~~~~y~~a~~~-~el~~~~~~~~~-------~~eaa~~~~~~g~~~~~~~~l~~~~~--------~~~~~~~~~~ 1019 (1382)
||...|+|++|-.. ++.+.+....++ +.--|.++...|+...|++.+.++=. ...+.. .
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---~ 267 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA---Y 267 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH---H
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH---H
Confidence 44455556555443 444444444442 33345566667777777777666533 222111 2
Q ss_pred HHHhhccCCCCCCCCCCcccccHHHHHHHHHHHhhhccchhh
Q 048652 1020 FVFSNSLWSPGSRGWPLKQFTQEEELLQKAKSLAKNDSNQFY 1061 (1382)
Q Consensus 1020 ~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1061 (1382)
+.+...+.. .+.+.+-.+.+.+|+..++......+
T Consensus 268 ~~l~~~~~~-------~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 268 FLITQIHYK-------LGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 233333332 23466777888888888876654433
No 447
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=78.79 E-value=1.6 Score=53.64 Aligned_cols=35 Identities=29% Similarity=0.152 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEe
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLAC 305 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVc 305 (1382)
+.+.++.|+||+||||+...+...|-..+.++.++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~ 69 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVF 69 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEe
Confidence 45889999999999999988887775445444433
No 448
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=78.72 E-value=1.2 Score=48.73 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=18.4
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
--.-|.||||+||||....+...+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 346789999999999987655443
No 449
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=78.64 E-value=2.6 Score=51.90 Aligned_cols=71 Identities=24% Similarity=0.247 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHH---HHHHc--CCceEEecCChH--HHHHHHHHHHHHh
Q 048652 252 EPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLF---SLLRI--KCRTLACTPTNV--AITELASRALRLV 323 (1382)
Q Consensus 252 ~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~---~Ll~~--~~RILVcAPTN~--AVDeVa~RL~~l~ 323 (1382)
+...+.+...|.. .+.....+..|+|++|.||||++..+.. .-+.. ...+-|+..... .+..+...+...+
T Consensus 134 ~~~~~~l~~~L~~-~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l 211 (549)
T 2a5y_B 134 EYHVDRVIKKLDE-MCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLML 211 (549)
T ss_dssp HHHHHHHHHHHHH-HTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhc-ccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHH
Confidence 3455566666643 1223457899999999999999876654 12222 345666655542 4556666666544
No 450
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=78.61 E-value=1.1 Score=53.20 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+.+|.||+|+|||+++..+...+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999988877665
No 451
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=78.06 E-value=1.7 Score=52.57 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=32.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCC--ce-EEecCChHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKC--RT-LACTPTNVAITELASRAL 320 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~--RI-LVcAPTN~AVDeVa~RL~ 320 (1382)
.+-.+|+||||+|||+++..++........ .+ ..+.....-+.++...+.
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhh
Confidence 567999999999999999999887764321 11 223444444555544443
No 452
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=77.84 E-value=1.3 Score=59.78 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=41.2
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHc---CCceEEecCChHHHHHHHHHHHHHh
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSLLRI---KCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~Ll~~---~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
++.+|.|+||||||+|+...+++++.. +.+||+++|+...-. +..|+...+
T Consensus 2 ~l~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt-~~~rl~~~l 55 (1166)
T 3u4q_B 2 GAEFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFL-MEYELAKTP 55 (1166)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHH-HHHHHTCCS
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHH-HHHHHHHhh
Confidence 578999999999999999999999976 579999977654333 666766543
No 453
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=77.79 E-value=1 Score=46.92 Aligned_cols=29 Identities=17% Similarity=0.102 Sum_probs=23.3
Q ss_pred CeEEEEcCCCCchHHHHHHHHHHHHHcCC
Q 048652 272 GVELRWGPPGTGKTKTVSMLLFSLLRIKC 300 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li~~Ll~~~~ 300 (1382)
.+..|.||.|+||||++..++..+-..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~ 31 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGL 31 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCC
Confidence 57889999999999999887776655543
No 454
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=77.33 E-value=1.2 Score=44.24 Aligned_cols=20 Identities=30% Similarity=0.406 Sum_probs=16.9
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li 292 (1382)
-.+|.|+||+|||+++..++
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36889999999999987665
No 455
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=77.13 E-value=2.5 Score=52.21 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=28.7
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEec
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACT 306 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcA 306 (1382)
..+.++.|+||+||||++..+...|-..+.++.++.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld 407 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLD 407 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEEC
Confidence 457889999999999998888777777776666654
No 456
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=76.79 E-value=0.53 Score=52.17 Aligned_cols=25 Identities=20% Similarity=-0.000 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
..+.+|.||||+||||.+..+...|
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5688999999999999986655443
No 457
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=76.75 E-value=1.3 Score=44.10 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~ 293 (1382)
-.+|.|+||+|||+++..++.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 368999999999999866553
No 458
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=76.72 E-value=1.4 Score=48.37 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li 292 (1382)
..+..|.||.|+||||++..+.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~ 52 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALL 52 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 6799999999999999986654
No 459
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=76.69 E-value=2.7 Score=52.18 Aligned_cols=37 Identities=14% Similarity=-0.022 Sum_probs=27.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHHHHcC-CceEEe
Q 048652 269 HKSGVELRWGPPGTGKTKTVSMLLFSLLRIK-CRTLAC 305 (1382)
Q Consensus 269 ~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~-~RILVc 305 (1382)
++.-+.+|.|+||+||||++..+...|-..| ..+.++
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~l 431 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLL 431 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEE
Confidence 4445789999999999998888777776555 454443
No 460
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=76.57 E-value=1.3 Score=46.48 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=17.4
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~ 293 (1382)
-.+|.||||+||||++..++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 468999999999999876553
No 461
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=76.50 E-value=1.7 Score=50.58 Aligned_cols=49 Identities=10% Similarity=-0.101 Sum_probs=31.3
Q ss_pred HHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCC
Q 048652 256 GAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPT 308 (1382)
Q Consensus 256 ~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPT 308 (1382)
+||... -.+ .+.....|-||+|+||||++..++..+-.....+.++...
T Consensus 60 ~ald~l-l~i---~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~ 108 (347)
T 2obl_A 60 RAIDGL-LTC---GIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER 108 (347)
T ss_dssp HHHHHH-SCE---ETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC
T ss_pred EEEEee-eee---cCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc
Confidence 466655 222 2467999999999999999766655532222344555544
No 462
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=76.43 E-value=1.3 Score=44.20 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=17.1
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li 292 (1382)
-.+|.|+||+|||+++..++
T Consensus 7 ~i~v~G~~~~GKssl~~~l~ 26 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYC 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 36789999999999987765
No 463
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=76.31 E-value=1.5 Score=48.38 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCchHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li 292 (1382)
.+..|.||.|+||||++..+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~ 45 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 789999999999999987654
No 464
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=76.03 E-value=1.3 Score=48.23 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li 292 (1382)
..+..|.||.|+||||++..+.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~ 51 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILG 51 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 6799999999999999986543
No 465
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=75.88 E-value=1 Score=53.25 Aligned_cols=58 Identities=21% Similarity=0.115 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHhhc---ccCCCCC-eEEEEcCCCCchHHHHHHHHHHHH------HcCCceEEe
Q 048652 248 STLNEPQVGAVFACLRRL---DCDHKSG-VELRWGPPGTGKTKTVSMLLFSLL------RIKCRTLAC 305 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~---~~~~~~~-~~LI~GPPGTGKTttI~~li~~Ll------~~~~RILVc 305 (1382)
+.++..|..++....... ...+... +.++.|-+|+||||+.+.+...|. ..|.|||++
T Consensus 85 ~~~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlli 152 (403)
T 3ez9_A 85 YALTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI 152 (403)
T ss_dssp ECBCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred eccCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 456778877777552211 0112223 455557799999999999999998 578999885
No 466
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=75.81 E-value=1.4 Score=44.64 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=17.8
Q ss_pred CeEEEEcCCCCchHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li 292 (1382)
...+|-||||+|||+++..++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 457899999999999987764
No 467
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=75.50 E-value=2.9 Score=49.35 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=24.4
Q ss_pred CCCCeEEEEcCCCCchHHHHHHHHHHHHHc
Q 048652 269 HKSGVELRWGPPGTGKTKTVSMLLFSLLRI 298 (1382)
Q Consensus 269 ~~~~~~LI~GPPGTGKTttI~~li~~Ll~~ 298 (1382)
.+..=.+|-||||||||+++..++......
T Consensus 173 grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~ 202 (427)
T 3l0o_A 173 GKGQRGMIVAPPKAGKTTILKEIANGIAEN 202 (427)
T ss_dssp BTTCEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cCCceEEEecCCCCChhHHHHHHHHHHhhc
Confidence 346678999999999999998877776543
No 468
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=75.45 E-value=1.7 Score=44.82 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~ 293 (1382)
..-.+|.|+||+|||+++..++.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999876653
No 469
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=75.34 E-value=1.9 Score=43.72 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=19.1
Q ss_pred CCCeEEEEcCCCCchHHHHHHHH
Q 048652 270 KSGVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 270 ~~~~~LI~GPPGTGKTttI~~li 292 (1382)
+..-.+|.|+||+|||+++..++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~ 29 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIR 29 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 45678999999999999986653
No 470
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=75.17 E-value=1.4 Score=46.07 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=17.6
Q ss_pred eEEEEcCCCCchHHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~ 293 (1382)
..+|.||||+||||++..++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 578999999999999876543
No 471
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=75.10 E-value=1.5 Score=43.79 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=16.4
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 048652 274 ELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 274 ~LI~GPPGTGKTttI~~li 292 (1382)
.+|.|+||+|||+++..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 6789999999999987654
No 472
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=75.09 E-value=1.4 Score=43.58 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=17.0
Q ss_pred EEEEcCCCCchHHHHHHHHH
Q 048652 274 ELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 274 ~LI~GPPGTGKTttI~~li~ 293 (1382)
.+|.|+||+|||+++..++.
T Consensus 6 i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999876653
No 473
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=75.04 E-value=1.4 Score=44.04 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=16.6
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 048652 274 ELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 274 ~LI~GPPGTGKTttI~~li 292 (1382)
.+|.|+||+|||+++..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFV 24 (170)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHH
Confidence 6789999999999987765
No 474
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=74.89 E-value=1.5 Score=44.36 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=17.2
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li 292 (1382)
-.+|.|+||+|||+++..++
T Consensus 9 ~i~v~G~~~~GKSsli~~l~ 28 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYV 28 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999999987664
No 475
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=74.87 E-value=1.4 Score=47.59 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li 292 (1382)
..+..|.||.|+||||++..+.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~ 56 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTIS 56 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 5789999999999999986643
No 476
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=74.86 E-value=1.7 Score=47.67 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li 292 (1382)
..+..|.||.|+||||++..+.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~ 52 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIG 52 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHh
Confidence 6799999999999999986543
No 477
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=74.76 E-value=1.6 Score=48.31 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~ 293 (1382)
..+..|.||.|+||||++..+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 67999999999999999876554
No 478
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=74.73 E-value=1.5 Score=44.37 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=17.6
Q ss_pred CeEEEEcCCCCchHHHHHHHH
Q 048652 272 GVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 272 ~~~LI~GPPGTGKTttI~~li 292 (1382)
--.+|.|+||+|||+++..++
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~ 29 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYV 29 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 347899999999999987665
No 479
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=74.51 E-value=1.4 Score=52.90 Aligned_cols=71 Identities=10% Similarity=0.067 Sum_probs=31.0
Q ss_pred cccccCCeeeeccCcccccccccccchhhhcccccccchHhhcCccccCChHHHHHhHHHHHHHHHhcCCC---hhhhhH
Q 048652 882 TSRSQRGKLCYKPKYEKTTLCYDKDGETYWEGRSTATDRKAAADPMCSSNPKEVKFNLQEAAEIFAAIGMP---DSAVRC 958 (1382)
Q Consensus 882 ~~~~~~~k~~~~~~~~~~~~cf~~ag~~~~~~~a~a~~l~~~a~~~~~~~~~~~~~~~~~aa~~fe~~~~~---~~aa~c 958 (1382)
.|.+-|-..+-..+|+.|..||.+++ .+.++|.++.- .. .|++|-++|+..+.. ..+..+
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a~--n~~~LA~~L~~---------Lg------~yq~AVea~~KA~~~~~Wk~v~~a 186 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNVS--NFGRLASTLVH---------LG------EYQAAVDGARKANSTRTWKEVCFA 186 (449)
T ss_dssp -------------CTTTHHHHHHHTT--CHHHHHHHHHT---------TT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhh--hHHHHHHHHHH---------hc------cHHHHHHHHHHcCCchhHHHHHHH
Confidence 46677777888889999999999772 23333322211 11 355555555555544 333345
Q ss_pred hhchhhHHhhh
Q 048652 959 FNDLEKYERAG 969 (1382)
Q Consensus 959 ~~~~~~y~~a~ 969 (1382)
+.+.|+|++|.
T Consensus 187 Cv~~~ef~lA~ 197 (449)
T 1b89_A 187 CVDGKEFRLAQ 197 (449)
T ss_dssp HHHTTCHHHHH
T ss_pred HHHcCcHHHHH
Confidence 55555555553
No 480
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=74.39 E-value=1.6 Score=43.70 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=16.8
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li 292 (1382)
-.+|.|+||+|||+++..++
T Consensus 5 ~i~v~G~~~~GKssli~~l~ 24 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFV 24 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36789999999999987654
No 481
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=74.25 E-value=1.7 Score=53.27 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCCchHHHHHHHHHHHHHcC----CceEEecCCh
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLFSLLRIK----CRTLACTPTN 309 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~~Ll~~~----~RILVcAPTN 309 (1382)
.++.||.|++|+|||+++..++..|+... -++.++=|..
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 58999999999999999999999887642 3556666654
No 482
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=74.18 E-value=1.6 Score=43.32 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.9
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li 292 (1382)
-.+|.|+||+|||+++..++
T Consensus 6 ~i~v~G~~~~GKssl~~~l~ 25 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFM 25 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36889999999999987665
No 483
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=74.12 E-value=8.4 Score=49.59 Aligned_cols=65 Identities=14% Similarity=-0.017 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHH
Q 048652 249 TLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRL 322 (1382)
Q Consensus 249 ~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l 322 (1382)
...+-|..++-..++ .. +.+.+.|||||-+.+.-+..-.-.+..++|+|||.-=+.++++-+..+
T Consensus 83 ~pt~VQ~~~ip~ll~-------G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l 147 (844)
T 1tf5_A 83 FPFKVQLMGGVALHD-------GN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKI 147 (844)
T ss_dssp CCCHHHHHHHHHHHT-------TS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCcHHHHHhhHHHhC-------CC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 678899999987765 23 899999999997655443322235789999999986555555544443
No 484
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=74.12 E-value=1.7 Score=48.35 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li 292 (1382)
..+..|.||.|+||||++..+.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~ 53 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCIN 53 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 6799999999999999986644
No 485
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=74.06 E-value=1.6 Score=48.02 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li 292 (1382)
..+..|.||.|+||||++..+.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~ 49 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLE 49 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 5699999999999999986644
No 486
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=74.05 E-value=6.7 Score=50.42 Aligned_cols=67 Identities=13% Similarity=-0.040 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHHHHcCCceEEecCChHHHHHHHHHHHHHh
Q 048652 248 STLNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSLLRIKCRTLACTPTNVAITELASRALRLV 323 (1382)
Q Consensus 248 ~~LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~Ll~~~~RILVcAPTN~AVDeVa~RL~~l~ 323 (1382)
....+-|..++...++ +- +.+.+.|||||-+.+.-+......+.+++|+|||..=+.++++-+..+.
T Consensus 73 ~~p~~VQ~~~i~~ll~--------G~-Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNE--------RC-IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp CCCCHHHHHHHHHHHS--------SE-EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCChHHHhhcccccC--------Ce-eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 3567899999987765 22 8999999999976544333223357899999999866655555555443
No 487
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=73.98 E-value=1.6 Score=48.45 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li 292 (1382)
..+..|.||.|+||||++..+.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~ 54 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVIT 54 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 6799999999999999986654
No 488
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=73.98 E-value=1.9 Score=48.28 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCchHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~ 293 (1382)
..+..|.||.|+||||++..+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 67999999999999999876554
No 489
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=73.89 E-value=1.8 Score=48.19 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=19.8
Q ss_pred CCeEEEEcCCCCchHHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLLF 293 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li~ 293 (1382)
..+..|.||.|+||||++..+..
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 67999999999999999876543
No 490
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=73.79 E-value=1.7 Score=43.84 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=16.9
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li 292 (1382)
-.+|.|+||+|||+++..++
T Consensus 6 ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHh
Confidence 47899999999999986654
No 491
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=73.76 E-value=1.7 Score=43.50 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.9
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li 292 (1382)
-.+|.|+||+|||+++..++
T Consensus 8 ~i~v~G~~~~GKSsli~~l~ 27 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFV 27 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 36889999999999987764
No 492
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=73.70 E-value=1.7 Score=43.37 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=16.8
Q ss_pred eEEEEcCCCCchHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li 292 (1382)
-.+|.|+||+|||+++..++
T Consensus 8 ~i~v~G~~~~GKssli~~l~ 27 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36789999999999986654
No 493
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=73.59 E-value=1.8 Score=62.72 Aligned_cols=40 Identities=30% Similarity=0.289 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHhhcccCCCCCeEEEEcCCCCchHHHHHHHHHHH
Q 048652 250 LNEPQVGAVFACLRRLDCDHKSGVELRWGPPGTGKTKTVSMLLFSL 295 (1382)
Q Consensus 250 LN~sQ~~AV~~~l~~~~~~~~~~~~LI~GPPGTGKTttI~~li~~L 295 (1382)
|++.=-.++..+++. .-..++.||||||||+++.++...+
T Consensus 630 ltdr~~~tl~~Al~~------~~~~~l~GpaGtGKTe~vk~LA~~l 669 (2695)
T 4akg_A 630 LLLIGFATLTDSLHQ------KYGGCFFGPAGTGKTETVKAFGQNL 669 (2695)
T ss_dssp HHHHHHHHHHHHHHT------TCEEEEECCTTSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh------CCCCcccCCCCCCcHHHHHHHHHHh
Confidence 333333444445442 4567789999999999998876654
No 494
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=73.55 E-value=1.7 Score=47.76 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.0
Q ss_pred CCeEEEEcCCCCchHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li 292 (1382)
..+..|.||.|+||||++..+.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~ 53 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 6799999999999999986544
No 495
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=73.54 E-value=1.7 Score=43.53 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=16.1
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 048652 274 ELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 274 ~LI~GPPGTGKTttI~~li 292 (1382)
.+|.|+||+|||+++..++
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999986653
No 496
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=73.50 E-value=1.8 Score=43.25 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=16.5
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 048652 274 ELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 274 ~LI~GPPGTGKTttI~~li 292 (1382)
.+|.|+||+|||+++..++
T Consensus 6 i~v~G~~~~GKssli~~l~ 24 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5788999999999987765
No 497
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=73.49 E-value=1.9 Score=48.03 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li 292 (1382)
..+..|.||.|+||||++..+.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~ 62 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIS 62 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHh
Confidence 5799999999999999986654
No 498
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=73.38 E-value=1.6 Score=48.91 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=19.8
Q ss_pred eEEEEcCCCCchHHHHHHHHHHHH
Q 048652 273 VELRWGPPGTGKTKTVSMLLFSLL 296 (1382)
Q Consensus 273 ~~LI~GPPGTGKTttI~~li~~Ll 296 (1382)
...|.||+|+||||++..+...+.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 367899999999999988776554
No 499
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=73.21 E-value=1.7 Score=47.31 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCchHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li 292 (1382)
..+..|.||.|+||||++..+.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~ 55 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIM 55 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 6799999999999999986654
No 500
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=73.19 E-value=1.9 Score=48.16 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.1
Q ss_pred CCeEEEEcCCCCchHHHHHHHH
Q 048652 271 SGVELRWGPPGTGKTKTVSMLL 292 (1382)
Q Consensus 271 ~~~~LI~GPPGTGKTttI~~li 292 (1382)
..+..|.||.|+||||++..+.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~ 71 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLN 71 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHT
T ss_pred CCEEEEEcCCCCcHHHHHHHHH
Confidence 6799999999999999986644
Done!