BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048653
(124 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LXA9|BH061_ARATH Transcription factor bHLH61 OS=Arabidopsis thaliana GN=BHLH61 PE=2
SV=1
Length = 315
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 44/156 (28%)
Query: 1 EHKKAAALHEKLQLLRSITNS-HALSKTSIIVDASNYIEELKQK--------------GF 45
E ++ L+++L LLRSI + +TSI+ DA +Y++EL K
Sbjct: 156 ERRRRKRLNDRLSLLRSIVPKITKMDRTSILGDAIDYMKELLDKINKLQEDEQELGSNSH 215
Query: 46 MINLFSKKS----------------------CP---GLLVSILGSAFEELALNVLEARVS 80
+ L + +S CP GL+VS + S E L L + + +S
Sbjct: 216 LSTLITNESMVRNSLKFEVDQREVNTHIDICCPTKPGLVVSTV-STLETLGLEIEQCVIS 274
Query: 81 CTDTFSLQAIGGKNEEQGETIDAHVVKQALLQVIRN 116
C FSLQA + EQ + + KQAL IRN
Sbjct: 275 CFSDFSLQASCFEVGEQRYMVTSEATKQAL---IRN 307
>sp|Q9LSL1|BH093_ARATH Transcription factor bHLH93 OS=Arabidopsis thaliana GN=BHLH93 PE=1
SV=1
Length = 351
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 56 PGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETIDAHVVKQALLQ 112
PGLL+S + + E L L + + +SC FSLQA + EQ + I + +KQAL +
Sbjct: 287 PGLLLSTVNT-LETLGLEIEQCVISCFSDFSLQASCSEGAEQRDFITSEDIKQALFR 342
>sp|P27059|RPOB_ASTLO DNA-directed RNA polymerase subunit beta OS=Astasia longa GN=rpoB
PE=3 SV=2
Length = 1076
Score = 33.5 bits (75), Expect = 0.36, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 4 KAAALHEKLQLLRSITNSHALSKTSIIVDASNYIEELKQKGFMINLFSKK 53
K+ LH K Q+L+++ N ++SK ++ I EL+ G IN+F+KK
Sbjct: 1021 KSDDLHNKSQILKNLMNGLSMSKPNVPESFKLLILELQSLGLNINIFTKK 1070
>sp|Q9LSE2|ICE1_ARATH Transcription factor ICE1 OS=Arabidopsis thaliana GN=SCRM PE=1 SV=1
Length = 494
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 47 INLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETIDAHVV 106
I++F + PGLL++ + A + L L+V +A +SC + F+L + ++G+ I +
Sbjct: 423 IHMFCGRR-PGLLLATM-KALDNLGLDVQQAVISCFNGFALDVFRAEQCQEGQEILPDQI 480
Query: 107 KQALL 111
K L
Sbjct: 481 KAVLF 485
>sp|Q9UHC1|MLH3_HUMAN DNA mismatch repair protein Mlh3 OS=Homo sapiens GN=MLH3 PE=1
SV=3
Length = 1453
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 6/40 (15%)
Query: 57 GLLVSILGSAFEELALNVLEARVSCT------DTFSLQAI 90
GL +S LG EELALN ++A C +TF +Q I
Sbjct: 16 GLAISSLGQCVEELALNSIDAEAKCVAVRVNMETFQVQVI 55
>sp|Q9LPW3|SCRM2_ARATH Transcription factor SCREAM2 OS=Arabidopsis thaliana GN=SCRM2 PE=1
SV=1
Length = 450
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 43 KGFMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETID 102
K I++F + PGLL+S + A + L L+V +A +SC + F+L + ++ +
Sbjct: 375 KAVNIHMFCGRR-PGLLLSTM-RALDNLGLDVQQAVISCFNGFALDVFRAEQCQEDHDVL 432
Query: 103 AHVVKQALL 111
+K LL
Sbjct: 433 PEQIKAVLL 441
>sp|B1VMC3|PURA_STRGG Adenylosuccinate synthetase OS=Streptomyces griseus subsp. griseus
(strain JCM 4626 / NBRC 13350) GN=purA PE=3 SV=1
Length = 427
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 1 EHKKAAALHEKLQLLRSITNSHALSKTSIIVDASNYIEELK 41
E K AAL +K QLL + N A+ ++ D Y E++K
Sbjct: 157 EQKVEAALEQKNQLLAKVFNRRAIEAGKVVEDMLQYAEQIK 197
>sp|Q0V7X4|FIT_ARATH Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION
FACTOR OS=Arabidopsis thaliana GN=FIT PE=1 SV=1
Length = 318
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 1 EHKKAAALHEKLQLLRS-ITNSHALSKTSIIVDASNYIEELKQK 43
E ++ + +KL LRS + N + K SI+ DA Y++EL+ +
Sbjct: 136 ERRRRGRMKDKLYALRSLVPNITKMDKASIVGDAVLYVQELQSQ 179
>sp|P31490|YERA_YERE8 YopE regulator OS=Yersinia enterocolitica serotype O:8 / biotype 1B
(strain 8081) GN=yerA PE=1 SV=1
Length = 130
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 54 SCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETIDAH-VVKQALLQ 112
S P + ++G E A ++ E V F+L ++ NE+ ET+ +H + Q +L+
Sbjct: 18 SIPDTIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNNEK--ETLLSHNIFSQDILK 75
Query: 113 VIRNWSE 119
I +W E
Sbjct: 76 PILSWDE 82
>sp|Q83N51|RECF_TROWT DNA replication and repair protein RecF OS=Tropheryma whipplei
(strain Twist) GN=recF PE=3 SV=1
Length = 363
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 34 SNYIEELKQKGFMINLFSKKSCPGLLVSILGSAFEELALNVLEAR 78
S Y LKQ+ ++ F K SC L+ I EL L ++ AR
Sbjct: 154 SAYDRTLKQRNSLLKSFRKSSCKSDLLDIWTQKLVELGLEIVNAR 198
>sp|Q83NZ4|RECF_TROW8 DNA replication and repair protein RecF OS=Tropheryma whipplei
(strain TW08/27) GN=recF PE=3 SV=1
Length = 363
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 34 SNYIEELKQKGFMINLFSKKSCPGLLVSILGSAFEELALNVLEAR 78
S Y LKQ+ ++ F K SC L+ I EL L ++ AR
Sbjct: 154 SAYDRTLKQRNSLLKSFRKSSCKSDLLDIWTQKLVELGLEIVNAR 198
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2
SV=1
Length = 589
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 1 EHKKAAALHEKLQLLRSI-TNSHALSKTSIIVDASNYIEELKQK 43
E ++ L+++ LR++ N + K S++ DA +YI ELK K
Sbjct: 421 ERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSK 464
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,919,123
Number of Sequences: 539616
Number of extensions: 1346655
Number of successful extensions: 3684
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 3673
Number of HSP's gapped (non-prelim): 31
length of query: 124
length of database: 191,569,459
effective HSP length: 91
effective length of query: 33
effective length of database: 142,464,403
effective search space: 4701325299
effective search space used: 4701325299
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)