Query 048653
Match_columns 124
No_of_seqs 112 out of 421
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 11:41:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048653.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048653hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00353 HLH helix loop heli 99.3 3.6E-12 7.8E-17 78.7 3.7 43 1-43 4-50 (53)
2 cd00083 HLH Helix-loop-helix d 99.2 1.1E-11 2.4E-16 77.7 3.6 43 1-43 12-58 (60)
3 PF00010 HLH: Helix-loop-helix 99.1 3.3E-11 7.1E-16 75.5 3.0 41 1-41 9-55 (55)
4 cd04897 ACT_ACR_3 ACT domain-c 98.3 1.1E-05 2.5E-10 54.4 9.5 67 46-115 3-73 (75)
5 cd04927 ACT_ACR-like_2 Second 98.3 8.5E-06 1.9E-10 54.2 8.7 69 45-116 1-73 (76)
6 cd04896 ACT_ACR-like_3 ACT dom 98.2 2.7E-05 5.8E-10 52.6 9.3 67 46-116 2-74 (75)
7 cd04895 ACT_ACR_1 ACT domain-c 98.2 2.8E-05 6E-10 52.1 8.9 65 46-113 3-67 (72)
8 cd04900 ACT_UUR-like_1 ACT dom 98.2 4.2E-05 9.1E-10 49.9 9.6 66 46-114 3-69 (73)
9 cd04925 ACT_ACR_2 ACT domain-c 97.8 0.00031 6.7E-09 46.1 9.1 67 46-114 2-72 (74)
10 KOG1318 Helix loop helix trans 97.8 1.8E-05 3.9E-10 68.1 3.8 43 1-43 241-288 (411)
11 cd04928 ACT_TyrKc Uncharacteri 97.8 0.0003 6.6E-09 46.7 8.8 64 46-114 3-67 (68)
12 cd04899 ACT_ACR-UUR-like_2 C-t 97.7 0.00092 2E-08 42.1 9.1 46 46-93 2-47 (70)
13 cd04926 ACT_ACR_4 C-terminal 97.5 0.0019 4.1E-08 42.1 9.4 68 44-115 1-68 (72)
14 KOG3561 Aryl-hydrocarbon recep 97.4 0.00021 4.6E-09 65.9 4.5 43 1-43 28-75 (803)
15 KOG0561 bHLH transcription fac 97.2 0.00027 5.9E-09 59.3 2.9 43 1-43 68-113 (373)
16 KOG4304 Transcriptional repres 97.1 0.00024 5.1E-09 57.6 2.0 43 1-43 40-91 (250)
17 PF01842 ACT: ACT domain; Int 97.0 0.012 2.5E-07 36.1 8.8 60 46-113 2-64 (66)
18 PRK00275 glnD PII uridylyl-tra 97.0 0.0065 1.4E-07 56.6 9.9 70 45-117 815-888 (895)
19 PRK05007 PII uridylyl-transfer 96.9 0.0057 1.2E-07 56.9 8.7 68 46-116 810-880 (884)
20 KOG1319 bHLHZip transcription 96.7 0.00087 1.9E-08 53.1 2.0 43 1-43 70-120 (229)
21 PRK01759 glnD PII uridylyl-tra 96.5 0.013 2.9E-07 54.3 8.7 67 45-114 784-853 (854)
22 PRK03059 PII uridylyl-transfer 96.5 0.013 2.9E-07 54.4 8.3 68 45-114 787-854 (856)
23 PRK05092 PII uridylyl-transfer 96.4 0.028 6E-07 52.5 9.9 69 45-116 844-916 (931)
24 TIGR01693 UTase_glnD [Protein- 96.4 0.028 6E-07 51.9 9.7 69 45-116 669-742 (850)
25 cd04873 ACT_UUR-ACR-like ACT d 96.4 0.078 1.7E-06 32.7 9.0 46 46-93 2-47 (70)
26 PRK04374 PII uridylyl-transfer 96.3 0.027 5.8E-07 52.5 9.4 67 45-114 797-866 (869)
27 PRK03381 PII uridylyl-transfer 96.3 0.03 6.6E-07 51.5 9.5 69 45-116 600-668 (774)
28 KOG4029 Transcription factor H 96.2 0.0041 9E-08 49.0 3.1 43 1-43 117-164 (228)
29 PRK00275 glnD PII uridylyl-tra 96.2 0.037 8E-07 51.7 9.6 69 45-116 705-779 (895)
30 KOG2483 Upstream transcription 96.1 0.0058 1.3E-07 49.3 3.5 44 1-44 67-114 (232)
31 PRK03381 PII uridylyl-transfer 96.0 0.041 8.9E-07 50.6 9.0 55 45-102 708-762 (774)
32 KOG3960 Myogenic helix-loop-he 96.0 0.0075 1.6E-07 49.6 3.5 43 1-43 126-171 (284)
33 PRK01759 glnD PII uridylyl-tra 95.9 0.069 1.5E-06 49.7 9.7 69 45-116 678-750 (854)
34 PF13740 ACT_6: ACT domain; PD 95.7 0.12 2.6E-06 33.8 7.9 65 45-116 3-68 (76)
35 PRK05007 PII uridylyl-transfer 95.4 0.13 2.8E-06 48.1 9.7 69 45-116 702-774 (884)
36 PRK03059 PII uridylyl-transfer 95.3 0.12 2.7E-06 48.1 9.2 69 45-116 679-751 (856)
37 PRK05092 PII uridylyl-transfer 95.2 0.15 3.3E-06 47.7 9.7 68 45-115 733-805 (931)
38 TIGR01693 UTase_glnD [Protein- 95.2 0.12 2.6E-06 47.7 8.9 67 45-114 780-849 (850)
39 PF13291 ACT_4: ACT domain; PD 95.0 0.5 1.1E-05 30.6 9.2 36 45-82 7-42 (80)
40 PRK04374 PII uridylyl-transfer 95.0 0.15 3.2E-06 47.8 8.9 70 45-116 691-761 (869)
41 cd04870 ACT_PSP_1 CT domains f 94.3 0.53 1.1E-05 30.4 7.9 63 47-115 2-65 (75)
42 cd04875 ACT_F4HF-DF N-terminal 94.2 0.73 1.6E-05 29.5 8.3 64 47-115 2-68 (74)
43 cd04887 ACT_MalLac-Enz ACT_Mal 94.0 0.54 1.2E-05 29.6 7.3 35 47-83 2-36 (74)
44 PRK00194 hypothetical protein; 93.7 0.52 1.1E-05 31.3 7.1 65 45-114 4-69 (90)
45 cd04872 ACT_1ZPV ACT domain pr 93.4 0.72 1.6E-05 30.6 7.4 67 45-116 2-69 (88)
46 cd04869 ACT_GcvR_2 ACT domains 93.3 1.4 3E-05 28.2 8.7 64 47-116 2-72 (81)
47 cd04886 ACT_ThrD-II-like C-ter 93.2 0.81 1.8E-05 27.7 6.9 33 48-82 2-34 (73)
48 cd04883 ACT_AcuB C-terminal AC 92.9 1.3 2.8E-05 27.6 7.7 62 44-113 1-64 (72)
49 cd04881 ACT_HSDH-Hom ACT_HSDH_ 92.6 1.5 3.3E-05 26.9 8.1 36 45-82 1-36 (79)
50 cd04893 ACT_GcvR_1 ACT domains 92.5 1.9 4.2E-05 28.1 8.4 64 45-115 2-66 (77)
51 cd04876 ACT_RelA-SpoT ACT dom 92.5 1.1 2.3E-05 26.0 6.6 35 47-83 1-35 (71)
52 cd04877 ACT_TyrR N-terminal AC 92.4 1.9 4.1E-05 27.7 8.1 37 46-85 2-38 (74)
53 KOG3558 Hypoxia-inducible fact 92.0 0.084 1.8E-06 48.6 1.8 41 2-42 55-100 (768)
54 COG2844 GlnD UTP:GlnB (protein 92.0 0.61 1.3E-05 43.9 7.3 67 44-114 791-857 (867)
55 cd04909 ACT_PDH-BS C-terminal 91.4 1.7 3.6E-05 27.0 6.9 35 46-82 3-37 (69)
56 cd04888 ACT_PheB-BS C-terminal 90.9 1.9 4.2E-05 27.0 6.9 35 46-82 2-36 (76)
57 cd04882 ACT_Bt0572_2 C-termina 90.7 2.1 4.5E-05 25.9 6.7 34 47-82 2-35 (65)
58 PRK13562 acetolactate synthase 90.4 1.3 2.9E-05 30.6 6.1 45 46-92 4-50 (84)
59 KOG3560 Aryl-hydrocarbon recep 90.2 0.2 4.2E-06 45.5 2.2 37 2-38 34-75 (712)
60 cd04884 ACT_CBS C-terminal ACT 90.1 2.3 5E-05 26.9 6.7 34 47-82 2-35 (72)
61 TIGR00119 acolac_sm acetolacta 89.6 2 4.4E-05 32.5 7.1 63 46-114 3-67 (157)
62 cd02116 ACT ACT domains are co 89.0 1.3 2.9E-05 24.0 4.5 34 48-83 2-35 (60)
63 PRK06737 acetolactate synthase 89.0 2.3 4.9E-05 28.7 6.3 36 46-83 4-39 (76)
64 KOG3559 Transcriptional regula 88.9 0.31 6.7E-06 43.1 2.4 39 2-40 10-53 (598)
65 PRK11152 ilvM acetolactate syn 88.8 3.2 6.9E-05 27.9 6.9 36 46-83 5-40 (76)
66 PRK06027 purU formyltetrahydro 88.8 3.8 8.3E-05 33.5 8.6 67 45-116 7-76 (286)
67 PRK08577 hypothetical protein; 88.7 4.8 0.0001 29.0 8.3 37 45-83 57-93 (136)
68 cd04880 ACT_AAAH-PDT-like ACT 88.5 4.6 0.0001 25.7 7.5 34 49-84 4-37 (75)
69 cd04908 ACT_Bt0572_1 N-termina 88.5 4.3 9.3E-05 25.3 7.7 37 46-84 3-39 (66)
70 KOG2588 Predicted DNA-binding 88.3 0.24 5.2E-06 46.9 1.4 43 1-43 284-328 (953)
71 PRK13011 formyltetrahydrofolat 87.5 6 0.00013 32.5 9.1 66 45-116 8-76 (286)
72 PRK11895 ilvH acetolactate syn 87.3 3.8 8.3E-05 31.2 7.3 36 46-83 4-39 (161)
73 cd04874 ACT_Af1403 N-terminal 86.4 5.3 0.00011 24.1 7.8 36 46-83 2-37 (72)
74 PRK04435 hypothetical protein; 85.9 5.6 0.00012 29.4 7.4 38 45-84 70-108 (147)
75 cd04903 ACT_LSD C-terminal ACT 85.6 5.7 0.00012 23.8 7.2 33 47-81 2-34 (71)
76 CHL00100 ilvH acetohydroxyacid 85.0 7.2 0.00016 30.1 7.8 63 46-115 4-69 (174)
77 cd04889 ACT_PDH-BS-like C-term 84.9 5.2 0.00011 23.9 5.8 34 48-83 2-35 (56)
78 cd04879 ACT_3PGDH-like ACT_3PG 84.8 6.2 0.00013 23.4 7.1 42 47-90 2-45 (71)
79 PRK13010 purU formyltetrahydro 84.7 6.4 0.00014 32.4 7.9 68 45-116 10-80 (289)
80 PF13710 ACT_5: ACT domain; PD 84.0 4 8.7E-05 26.0 5.1 27 56-83 3-29 (63)
81 PRK07334 threonine dehydratase 83.6 20 0.00042 30.4 10.6 42 39-82 319-362 (403)
82 TIGR00655 PurU formyltetrahydr 83.2 11 0.00024 30.8 8.7 62 46-112 2-66 (280)
83 COG2844 GlnD UTP:GlnB (protein 83.1 6.1 0.00013 37.5 7.8 70 44-116 684-757 (867)
84 cd04878 ACT_AHAS N-terminal AC 82.9 7.8 0.00017 23.1 7.1 35 46-82 2-36 (72)
85 cd04905 ACT_CM-PDT C-terminal 82.8 10 0.00022 24.4 8.0 34 47-82 4-37 (80)
86 cd04885 ACT_ThrD-I Tandem C-te 81.9 6.6 0.00014 24.7 5.6 32 48-82 2-33 (68)
87 PRK08178 acetolactate synthase 74.4 18 0.00038 25.6 6.3 46 45-92 9-56 (96)
88 COG4747 ACT domain-containing 73.5 26 0.00055 26.3 7.2 38 46-85 5-42 (142)
89 PF02344 Myc-LZ: Myc leucine z 73.2 2.7 5.8E-05 24.2 1.6 16 2-17 14-29 (32)
90 cd04904 ACT_AAAH ACT domain of 71.9 10 0.00023 24.4 4.5 34 48-83 4-37 (74)
91 PF05088 Bac_GDH: Bacterial NA 69.7 50 0.0011 33.5 10.3 72 45-119 490-566 (1528)
92 KOG4447 Transcription factor T 69.6 2 4.4E-05 33.2 0.7 38 1-38 86-126 (173)
93 COG3830 ACT domain-containing 69.3 14 0.0003 25.9 4.8 67 45-116 4-71 (90)
94 PRK11589 gcvR glycine cleavage 69.1 38 0.00082 26.3 7.7 65 45-115 96-167 (190)
95 cd04929 ACT_TPH ACT domain of 67.1 33 0.00071 22.5 7.2 32 49-82 5-36 (74)
96 KOG4447 Transcription factor T 66.8 4.9 0.00011 31.1 2.3 54 1-54 30-89 (173)
97 cd04937 ACT_AKi-DapG-BS_2 ACT 64.0 32 0.00068 21.2 5.8 21 56-77 15-35 (64)
98 COG4747 ACT domain-containing 63.7 12 0.00026 28.1 3.8 37 37-75 56-98 (142)
99 cd04894 ACT_ACR-like_1 ACT dom 63.1 43 0.00093 22.4 6.6 66 46-113 2-67 (69)
100 PLN03217 transcription factor 62.9 12 0.00026 26.4 3.4 38 6-43 20-64 (93)
101 PRK11589 gcvR glycine cleavage 62.8 28 0.00061 27.0 5.9 62 45-113 9-71 (190)
102 cd04901 ACT_3PGDH C-terminal A 62.4 16 0.00034 22.2 3.7 37 49-87 4-40 (69)
103 KOG3898 Transcription factor N 61.6 4.8 0.0001 32.6 1.5 43 1-43 80-126 (254)
104 PRK00227 glnD PII uridylyl-tra 60.6 64 0.0014 30.0 8.6 68 45-116 547-615 (693)
105 cd04931 ACT_PAH ACT domain of 59.4 25 0.00054 24.1 4.6 34 47-82 17-50 (90)
106 PRK10872 relA (p)ppGpp synthet 59.2 75 0.0016 29.9 8.9 35 46-82 668-702 (743)
107 PRK06382 threonine dehydratase 58.3 70 0.0015 27.1 8.0 34 45-80 331-364 (406)
108 TIGR01127 ilvA_1Cterm threonin 57.0 94 0.002 25.8 8.5 40 39-80 298-339 (380)
109 cd04902 ACT_3PGDH-xct C-termin 56.5 43 0.00093 20.3 6.1 33 48-82 3-35 (73)
110 TIGR00691 spoT_relA (p)ppGpp s 56.5 95 0.0021 28.6 9.0 38 46-85 612-650 (683)
111 PRK11092 bifunctional (p)ppGpp 55.2 1E+02 0.0022 28.7 9.0 36 46-83 628-663 (702)
112 COG0440 IlvH Acetolactate synt 53.3 64 0.0014 24.9 6.3 64 47-116 7-72 (163)
113 PF13344 Hydrolase_6: Haloacid 51.6 50 0.0011 22.5 5.1 45 29-75 15-59 (101)
114 cd04915 ACT_AK-Ectoine_2 ACT d 49.6 63 0.0014 20.2 5.9 26 56-82 15-40 (66)
115 cd04919 ACT_AK-Hom3_2 ACT doma 49.1 57 0.0012 19.6 6.0 23 56-79 15-37 (66)
116 PRK08198 threonine dehydratase 48.9 1.1E+02 0.0023 25.7 7.6 34 45-80 328-361 (404)
117 cd04930 ACT_TH ACT domain of t 48.9 41 0.00089 24.0 4.4 35 46-82 43-77 (115)
118 cd04922 ACT_AKi-HSDH-ThrA_2 AC 48.1 58 0.0013 19.3 7.2 23 56-79 15-37 (66)
119 COG2061 ACT-domain-containing 48.0 31 0.00067 26.8 3.9 36 45-82 6-41 (170)
120 cd04932 ACT_AKiii-LysC-EC_1 AC 46.2 81 0.0018 20.5 5.9 54 56-117 15-68 (75)
121 cd04890 ACT_AK-like_1 ACT doma 44.8 46 0.001 20.0 3.7 31 56-88 14-44 (62)
122 PRK05974 phosphoribosylformylg 43.5 95 0.0021 20.5 5.8 34 46-81 2-40 (80)
123 cd04918 ACT_AK1-AT_2 ACT domai 42.8 80 0.0017 19.5 5.8 26 56-82 14-39 (65)
124 PF02700 PurS: Phosphoribosylf 40.4 1.1E+02 0.0023 20.6 5.2 43 45-89 1-48 (80)
125 COG3474 Cytochrome c2 [Energy 37.4 40 0.00086 25.4 2.9 36 6-41 91-131 (135)
126 KOG4395 Transcription factor A 36.7 35 0.00077 28.4 2.8 43 1-43 182-228 (285)
127 PRK10444 UMP phosphatase; Prov 36.3 73 0.0016 25.2 4.5 50 28-79 17-66 (248)
128 COG1828 PurS Phosphoribosylfor 34.5 1.5E+02 0.0033 20.3 5.5 42 46-89 3-49 (83)
129 cd04892 ACT_AK-like_2 ACT doma 34.1 93 0.002 17.7 7.1 25 56-81 14-38 (65)
130 TIGR01458 HAD-SF-IIA-hyp3 HAD- 34.0 58 0.0013 25.6 3.6 49 29-79 22-70 (257)
131 cd04920 ACT_AKiii-DAPDC_2 ACT 33.1 1.2E+02 0.0026 18.7 5.6 24 56-80 14-37 (63)
132 cd04906 ACT_ThrD-I_1 First of 32.6 1.4E+02 0.0031 19.4 5.7 28 46-77 3-30 (85)
133 cd04912 ACT_AKiii-LysC-EC-like 32.5 87 0.0019 19.9 3.7 23 56-79 15-37 (75)
134 COG1817 Uncharacterized protei 32.5 68 0.0015 27.6 3.9 34 36-75 19-52 (346)
135 PRK11899 prephenate dehydratas 32.4 2.8E+02 0.0061 22.7 7.9 31 50-82 200-230 (279)
136 cd04916 ACT_AKiii-YclM-BS_2 AC 32.3 1.1E+02 0.0024 18.0 5.9 23 56-79 15-37 (66)
137 PRK00227 glnD PII uridylyl-tra 30.9 1.6E+02 0.0035 27.4 6.4 58 46-114 633-690 (693)
138 cd04935 ACT_AKiii-DAPDC_1 ACT 30.5 1E+02 0.0023 19.9 3.9 23 56-79 15-37 (75)
139 PRK06349 homoserine dehydrogen 29.7 3.6E+02 0.0078 23.1 8.6 34 45-80 349-382 (426)
140 PF07194 P2: P2 response regul 29.6 1.7E+02 0.0036 19.2 6.6 32 45-78 3-37 (84)
141 cd04923 ACT_AK-LysC-DapG-like_ 28.8 1.2E+02 0.0027 17.5 7.0 24 56-80 14-37 (63)
142 cd04921 ACT_AKi-HSDH-ThrA-like 28.7 1.5E+02 0.0033 18.4 6.2 24 56-80 15-38 (80)
143 TIGR00302 phosphoribosylformyl 28.6 1.8E+02 0.0038 19.2 5.4 33 47-81 3-40 (80)
144 PF02879 PGM_PMM_II: Phosphogl 28.5 1.8E+02 0.0039 19.3 5.2 42 43-87 20-61 (104)
145 KOG3348 BolA (bacterial stress 28.4 76 0.0017 22.1 3.0 56 59-116 8-65 (85)
146 cd00291 SirA_YedF_YeeD SirA, Y 27.8 47 0.001 20.4 1.8 19 52-71 6-24 (69)
147 cd04934 ACT_AK-Hom3_1 CT domai 27.5 1.8E+02 0.0038 18.8 5.2 24 56-80 15-38 (73)
148 cd04936 ACT_AKii-LysC-BS-like_ 27.4 1.3E+02 0.0029 17.3 5.4 24 56-80 14-37 (63)
149 cd04924 ACT_AK-Arch_2 ACT doma 27.3 1.4E+02 0.003 17.5 5.9 23 56-79 15-37 (66)
150 COG0317 SpoT Guanosine polypho 26.8 4.1E+02 0.009 25.0 8.2 36 45-82 628-663 (701)
151 TIGR01211 ELP3 histone acetylt 26.7 2E+02 0.0044 25.8 6.1 98 7-113 119-251 (522)
152 PRK11898 prephenate dehydratas 26.3 2.3E+02 0.005 23.0 6.0 29 53-83 206-234 (283)
153 PLN02645 phosphoglycolate phos 26.0 1.4E+02 0.0029 24.3 4.6 49 29-79 45-93 (311)
154 PF01206 TusA: Sulfurtransfera 25.7 53 0.0011 20.5 1.7 19 52-71 7-25 (70)
155 COG4492 PheB ACT domain-contai 25.0 1.1E+02 0.0024 23.3 3.5 34 45-80 73-106 (150)
156 PLN02495 oxidoreductase, actin 25.0 2.4E+02 0.0053 24.2 6.1 57 30-88 97-157 (385)
157 PRK08210 aspartate kinase I; R 24.8 2.2E+02 0.0048 23.9 5.7 48 56-114 353-400 (403)
158 cd04933 ACT_AK1-AT_1 ACT domai 24.1 2.2E+02 0.0048 18.8 5.4 24 56-80 15-38 (78)
159 TIGR02263 benz_CoA_red_C benzo 23.9 3E+02 0.0065 23.2 6.4 77 4-82 173-268 (380)
160 PF00331 Glyco_hydro_10: Glyco 23.6 1.5E+02 0.0032 24.4 4.4 42 32-75 189-237 (320)
161 cd06570 GH20_chitobiase-like_1 23.2 3.7E+02 0.0081 22.2 6.7 59 56-115 17-79 (311)
162 TIGR01457 HAD-SF-IIA-hyp2 HAD- 23.1 1.3E+02 0.0029 23.4 3.9 48 30-79 19-66 (249)
163 COG0788 PurU Formyltetrahydrof 23.0 4.6E+02 0.01 22.1 7.8 66 45-115 8-76 (287)
164 PRK08526 threonine dehydratase 22.3 3.8E+02 0.0083 22.9 6.8 34 45-80 327-360 (403)
165 smart00842 FtsA Cell division 21.7 3.4E+02 0.0073 20.0 5.8 54 65-119 54-113 (187)
166 PF13840 ACT_7: ACT domain ; P 21.7 1E+02 0.0022 19.3 2.5 22 56-78 21-42 (65)
167 cd04911 ACT_AKiii-YclM-BS_1 AC 21.5 1.4E+02 0.003 20.0 3.2 32 56-89 15-46 (76)
168 PRK11858 aksA trans-homoaconit 21.0 2.9E+02 0.0064 23.3 5.8 49 25-74 110-161 (378)
169 cd02742 GH20_hexosaminidase Be 20.8 4.2E+02 0.0092 21.4 6.5 58 56-114 15-82 (303)
170 TIGR03191 benz_CoA_bzdO benzoy 20.7 3.6E+02 0.0078 23.3 6.3 75 4-81 193-292 (430)
171 TIGR03527 selenium_YedF seleni 20.0 3.7E+02 0.0081 20.8 5.8 73 34-113 108-188 (194)
No 1
>smart00353 HLH helix loop helix domain.
Probab=99.28 E-value=3.6e-12 Score=78.69 Aligned_cols=43 Identities=30% Similarity=0.482 Sum_probs=40.0
Q ss_pred CchhHHHHhHhhHhhhhcCC----CCCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN----SHALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP----~sk~dKaSIl~daI~YikeL~~~ 43 (124)
||+||.++|+.|..|++++| ..++||++||..||+||++|+.+
T Consensus 4 Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~ 50 (53)
T smart00353 4 ERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEE 50 (53)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999 45799999999999999999874
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.21 E-value=1.1e-11 Score=77.69 Aligned_cols=43 Identities=28% Similarity=0.480 Sum_probs=40.5
Q ss_pred CchhHHHHhHhhHhhhhcCC-C---CCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN-S---HALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP-~---sk~dKaSIl~daI~YikeL~~~ 43 (124)
||+||.++|+.|..|++++| . .++||++||..|++||+.|+..
T Consensus 12 Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~ 58 (60)
T cd00083 12 ERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQEL 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999 5 8899999999999999999864
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.13 E-value=3.3e-11 Score=75.46 Aligned_cols=41 Identities=29% Similarity=0.512 Sum_probs=38.7
Q ss_pred CchhHHHHhHhhHhhhhcCC-C-----CCccccchHHhHHHHHHHHH
Q 048653 1 EHKKAAALHEKLQLLRSITN-S-----HALSKTSIIVDASNYIEELK 41 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP-~-----sk~dKaSIl~daI~YikeL~ 41 (124)
||+||..||+.|..|+.++| . .++||++||..||+||++||
T Consensus 9 Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 9 ERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 78999999999999999999 4 57999999999999999997
No 4
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.30 E-value=1.1e-05 Score=54.41 Aligned_cols=67 Identities=16% Similarity=0.294 Sum_probs=54.8
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccC----HHHHHHHHHHHHh
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETID----AHVVKQALLQVIR 115 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s----~~~ik~aL~~ai~ 115 (124)
.|+|.|..+ ||+|.+|. .+|-++|++|.+|.|+|..+-..+.+.+... +|..++ .+.++++|..++.
T Consensus 3 vveV~~~DR-pGLL~~i~-~~l~~~~l~I~~A~I~T~gera~D~FyV~d~-~g~kl~~~~~~~~l~~~L~~al~ 73 (75)
T cd04897 3 VVTVQCRDR-PKLLFDVV-CTLTDMDYVVFHATIDTDGDDAHQEYYIRHK-DGRTLSTEGERQRVIKCLEAAIE 73 (75)
T ss_pred EEEEEeCCc-CcHHHHHH-HHHHhCCeEEEEEEEeecCceEEEEEEEEcC-CCCccCCHHHHHHHHHHHHHHHh
Confidence 468999999 99999999 9999999999999999999888888876543 354453 3467777777765
No 5
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.29 E-value=8.5e-06 Score=54.15 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=53.6
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeee-cCceEEEEeeccccCCCCccC---HHHHHHHHHHHHhc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSC-TDTFSLQAIGGKNEEQGETID---AHVVKQALLQVIRN 116 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~-~~~f~l~a~~~~~~~~~~~~s---~~~ik~aL~~ai~~ 116 (124)
+.++|.+..+ ||+|.++. .+|..+|++|++|++++ .+|..++++.+... ++...+ .+.++++|.++++.
T Consensus 1 ~~~ei~~~Dr-~gLfa~i~-~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~-~~~~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 1 FLLKLFCSDR-KGLLHDVT-EVLYELELTIERVKVSTTPDGRVLDLFFITDA-RELLHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred CEEEEEECCC-CCHHHHHH-HHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC-CCCCCCHHHHHHHHHHHHHHHch
Confidence 3578999988 99999999 99999999999999996 78999998877543 222222 34477777777654
No 6
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.18 E-value=2.7e-05 Score=52.61 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=53.9
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEee--ecCceEEEEeeccccCCCCcc-C---HHHHHHHHHHHHhc
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVS--CTDTFSLQAIGGKNEEQGETI-D---AHVVKQALLQVIRN 116 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS--~~~~f~l~a~~~~~~~~~~~~-s---~~~ik~aL~~ai~~ 116 (124)
.++|.+..+ ||+|.+|. .+|..+|++|+.|.|+ +.+.-...++.+ .. ++..+ + .+.++++|.+++..
T Consensus 2 vlev~a~DR-pGLL~~i~-~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~-~g~kl~d~~~~~~L~~~L~~~l~~ 74 (75)
T cd04896 2 LLQIRCVDQ-KGLLYDIL-RTSKDCNIQISYGRFSSKVKGYREVDLFIV-QS-DGKKIMDPKKQAALCARLREEMVC 74 (75)
T ss_pred EEEEEeCCc-ccHHHHHH-HHHHHCCeEEEEEEEecCcccCEEEEEEEE-eC-CCCccCCHHHHHHHHHHHHHHhcC
Confidence 468899999 99999999 9999999999999999 998888888777 32 34334 3 45688888877654
No 7
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.16 E-value=2.8e-05 Score=52.12 Aligned_cols=65 Identities=14% Similarity=0.319 Sum_probs=50.4
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccCHHHHHHHHHHH
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETIDAHVVKQALLQV 113 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~a 113 (124)
.|+|....+ ||+|.+|. ++|.++||+|+.|.|++.++-...++.+... +|..++-+.-.+.|.++
T Consensus 3 viev~a~DR-pGLL~~i~-~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~-~g~kl~d~~~~~~l~~~ 67 (72)
T cd04895 3 LVKVDSARK-PGILLEAV-QVLTDLDLCITKAYISSDGGWFMDVFHVTDQ-LGNKLTDDSLIAYIEKS 67 (72)
T ss_pred EEEEEECCc-CCHHHHHH-HHHHHCCcEEEEEEEeecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHH
Confidence 478899999 99999999 9999999999999999999998888877543 34555322333344433
No 8
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.16 E-value=4.2e-05 Score=49.87 Aligned_cols=66 Identities=26% Similarity=0.477 Sum_probs=48.9
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec-CceEEEEeeccccCCCCccCHHHHHHHHHHHH
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT-DTFSLQAIGGKNEEQGETIDAHVVKQALLQVI 114 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~-~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai 114 (124)
.|.|.+..+ ||+|.++. .+|..+|++|++|++.+. +|++++.+.+... ++.....++-.+.+.+.|
T Consensus 3 ~i~v~~~Dr-~gLl~~i~-~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~-~~~~~~~~~~~~~l~~~L 69 (73)
T cd04900 3 EVFIYTPDR-PGLFARIA-GALDQLGLNILDARIFTTRDGYALDTFVVLDP-DGEPIGERERLARIREAL 69 (73)
T ss_pred EEEEEecCC-CCHHHHHH-HHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC-CCCCCChHHHHHHHHHHH
Confidence 577888888 99999999 999999999999999877 7999998876532 233343333333444443
No 9
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.82 E-value=0.00031 Score=46.14 Aligned_cols=67 Identities=30% Similarity=0.407 Sum_probs=51.6
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCcc-C---HHHHHHHHHHHH
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETI-D---AHVVKQALLQVI 114 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~-s---~~~ik~aL~~ai 114 (124)
.+.|.+..+ ||+|.+|. .+|...|++|+.|++++.++..+..+.+...+++... + .+.++++|.+++
T Consensus 2 ~~~v~~~Dr-~gLl~~i~-~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l 72 (74)
T cd04925 2 AIELTGTDR-PGLLSEVF-AVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVL 72 (74)
T ss_pred EEEEEECCC-CCHHHHHH-HHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHh
Confidence 367888888 99999999 9999999999999999999998888776532212222 2 345677776665
No 10
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=97.80 E-value=1.8e-05 Score=68.13 Aligned_cols=43 Identities=21% Similarity=0.444 Sum_probs=40.1
Q ss_pred CchhHHHHhHhhHhhhhcCCCC-----CccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITNSH-----ALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP~s-----k~dKaSIl~daI~YikeL~~~ 43 (124)
|||||+++|++...|--|+|-+ +-.|..||+-+.+||++|++.
T Consensus 241 ERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~ 288 (411)
T KOG1318|consen 241 ERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQT 288 (411)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHH
Confidence 7999999999999999999933 668999999999999999988
No 11
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.80 E-value=0.0003 Score=46.68 Aligned_cols=64 Identities=25% Similarity=0.281 Sum_probs=52.6
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec-CceEEEEeeccccCCCCccCHHHHHHHHHHHH
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT-DTFSLQAIGGKNEEQGETIDAHVVKQALLQVI 114 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~-~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai 114 (124)
.|-|.+..+ ||++.++. .+|..+||+|++|++.+. ||+.+.++.+-.. ..=+...+.++|++++
T Consensus 3 eI~V~~~Dr-~gLFa~ia-g~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~---~~~~~~~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDK-PKLLSQLS-SLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW---KRGETAALGHALQKEI 67 (68)
T ss_pred EEEEEECCC-cchHHHHH-HHHHHCCCceEEEEEEEcCCCeEEEEEEEecC---CccchHHHHHHHHHhh
Confidence 466778877 99999999 999999999999999865 7999998877642 2335678888888876
No 12
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.65 E-value=0.00092 Score=42.12 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=39.9
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeecc
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGK 93 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~ 93 (124)
.+.|.+..+ ||+|.+++ .+|.+.|+++.++++.+.+++.+..+...
T Consensus 2 ~l~v~~~d~-~gll~~i~-~~l~~~~~~I~~~~~~~~~~~~~~~f~i~ 47 (70)
T cd04899 2 VLELTALDR-PGLLADVT-RVLAELGLNIHSAKIATLGERAEDVFYVT 47 (70)
T ss_pred EEEEEEcCC-ccHHHHHH-HHHHHCCCeEEEEEEEecCCEEEEEEEEE
Confidence 477889999 99999999 99999999999999998887777666544
No 13
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.53 E-value=0.0019 Score=42.10 Aligned_cols=68 Identities=24% Similarity=0.350 Sum_probs=50.5
Q ss_pred CeeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccCHHHHHHHHHHHHh
Q 048653 44 GFMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETIDAHVVKQALLQVIR 115 (124)
Q Consensus 44 g~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~ 115 (124)
|..|.|.++.+ ||+|.++. .+|.++|++|++|.+.+.++..+..+.+... ++...+. +-.+.+.++|.
T Consensus 1 gtri~V~~~D~-~Gll~~i~-~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~-~~~~~~~-~~~~~l~~~l~ 68 (72)
T cd04926 1 GVRLELRTEDR-VGLLSDVT-RVFRENGLTVTRAEISTQGDMAVNVFYVTDA-NGNPVDP-KTIEAVRQEIG 68 (72)
T ss_pred CeEEEEEECCc-cCHHHHHH-HHHHHCCcEEEEEEEecCCCeEEEEEEEECC-CCCcCCH-HHHHHHHHHhc
Confidence 34677888888 99999999 9999999999999999888877777665432 2333343 34455666665
No 14
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.36 E-value=0.00021 Score=65.92 Aligned_cols=43 Identities=12% Similarity=0.263 Sum_probs=40.9
Q ss_pred CchhHHHHhHhhHhhhhcCC--C---CCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN--S---HALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP--~---sk~dKaSIl~daI~YikeL~~~ 43 (124)
|+|||+|+|.-+..|-++|| + -|+||..||--||.+|+.++..
T Consensus 28 EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 28 EKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred HHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 79999999999999999999 4 7999999999999999999985
No 15
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.18 E-value=0.00027 Score=59.32 Aligned_cols=43 Identities=26% Similarity=0.512 Sum_probs=39.4
Q ss_pred CchhHHHHhHhhHhhhhcCC---CCCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN---SHALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP---~sk~dKaSIl~daI~YikeL~~~ 43 (124)
||+|=..+|.-|..||+|+| --|..||.||-.+.+||.+|+..
T Consensus 68 ERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~ 113 (373)
T KOG0561|consen 68 ERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGH 113 (373)
T ss_pred HHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhc
Confidence 56666789999999999999 78899999999999999999988
No 16
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=97.13 E-value=0.00024 Score=57.63 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=40.8
Q ss_pred CchhHHHHhHhhHhhhhcCC---------CCCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN---------SHALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP---------~sk~dKaSIl~daI~YikeL~~~ 43 (124)
|||||.++|+=|..|+.++| .+|++||=||-=|++|+++|+..
T Consensus 40 EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~ 91 (250)
T KOG4304|consen 40 EKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRS 91 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 79999999999999999999 27789999999999999999998
No 17
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.05 E-value=0.012 Score=36.09 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=44.8
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCc---eEEEEeeccccCCCCccCHHHHHHHHHHH
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDT---FSLQAIGGKNEEQGETIDAHVVKQALLQV 113 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~---f~l~a~~~~~~~~~~~~s~~~ik~aL~~a 113 (124)
.|.|.|+.+ ||.|.++. ++|.+.|++|.++.+....+ +.+-.... ...+.+.+.++|.++
T Consensus 2 ~v~v~~~dr-pG~l~~v~-~~la~~~inI~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~ 64 (66)
T PF01842_consen 2 RVRVIVPDR-PGILADVT-EILADHGINIDSISQSSDKDGVGIVFIVIVV------DEEDLEKLLEELEAL 64 (66)
T ss_dssp EEEEEEETS-TTHHHHHH-HHHHHTTEEEEEEEEEEESSTTEEEEEEEEE------EGHGHHHHHHHHHHH
T ss_pred EEEEEcCCC-CCHHHHHH-HHHHHcCCCHHHeEEEecCCCceEEEEEEEC------CCCCHHHHHHHHHcc
Confidence 578899999 99999999 99999999999999888865 22222222 223566777777654
No 18
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.95 E-value=0.0065 Score=56.65 Aligned_cols=70 Identities=16% Similarity=0.271 Sum_probs=56.7
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCcc-C---HHHHHHHHHHHHhcc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETI-D---AHVVKQALLQVIRNW 117 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~-s---~~~ik~aL~~ai~~~ 117 (124)
..|.|.+..+ ||+|.+|. .+|..+|++|+.|+|++.++.++.++.+... ++..+ + .+.|+++|.+++...
T Consensus 815 T~i~V~a~Dr-pGLLa~I~-~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~-~g~~l~~~~~~~~l~~~L~~~L~~~ 888 (895)
T PRK00275 815 TVLEIIAPDR-PGLLARIG-RIFLEFDLSLQNAKIATLGERVEDVFFITDA-DNQPLSDPQLCSRLQDAICEQLDAR 888 (895)
T ss_pred EEEEEEECCC-CCHHHHHH-HHHHHCCCEEEEeEEEecCCEEEEEEEEECC-CCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 3567888888 99999999 9999999999999999999999999887643 33333 3 356888888888543
No 19
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.86 E-value=0.0057 Score=56.89 Aligned_cols=68 Identities=16% Similarity=0.290 Sum_probs=54.8
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccC---HHHHHHHHHHHHhc
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETID---AHVVKQALLQVIRN 116 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s---~~~ik~aL~~ai~~ 116 (124)
.|+|.+..+ ||+|.+|. .+|.++|++|..|.|+|.++-+..++.+... +|..++ .+.|+++|..++..
T Consensus 810 vlEV~a~DR-pGLL~~I~-~~l~~~~l~I~~AkI~T~gera~DvFyV~~~-~g~~l~~~~~~~l~~~L~~~l~~ 880 (884)
T PRK05007 810 YMELIALDQ-PGLLARVG-KIFADLGISLHGARITTIGERVEDLFILATA-DRRALNEELQQELRQRLTEALNP 880 (884)
T ss_pred EEEEEeCCc-hHHHHHHH-HHHHHCCcEEEEEEEeccCceEEEEEEEEcC-CCCcCCHHHHHHHHHHHHHHHhh
Confidence 468888889 99999999 9999999999999999999888888876542 355555 34677777777644
No 20
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=96.72 E-value=0.00087 Score=53.12 Aligned_cols=43 Identities=26% Similarity=0.396 Sum_probs=39.0
Q ss_pred CchhHHHHhHhhHhhhhcCC-C------C-CccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN-S------H-ALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP-~------s-k~dKaSIl~daI~YikeL~~~ 43 (124)
||+||+.+|.-+.-|..||| - . |..||-||--+|+||..|.+.
T Consensus 70 EqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~ 120 (229)
T KOG1319|consen 70 EQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKE 120 (229)
T ss_pred HHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999 1 1 568999999999999999877
No 21
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=96.54 E-value=0.013 Score=54.30 Aligned_cols=67 Identities=28% Similarity=0.439 Sum_probs=52.5
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccCH---HHHHHHHHHHH
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETIDA---HVVKQALLQVI 114 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s~---~~ik~aL~~ai 114 (124)
-.|+|....+ ||+|.+|. ++|.++|++|+.|.|+|...-+.+++.+... +|..++. +.|+++|..++
T Consensus 784 T~iev~a~Dr-pGLL~~I~-~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~-~g~~l~~~~~~~l~~~L~~~l 853 (854)
T PRK01759 784 TEMELFALDR-AGLLAQVS-QVFSELNLNLLNAKITTIGEKAEDFFILTNQ-QGQALDEEERKALKSRLLSNL 853 (854)
T ss_pred EEEEEEeCCc-hHHHHHHH-HHHHHCCCEEEEEEEcccCceEEEEEEEECC-CCCcCChHHHHHHHHHHHHHh
Confidence 3568888889 99999999 9999999999999999999888887766542 3444442 55666666654
No 22
>PRK03059 PII uridylyl-transferase; Provisional
Probab=96.48 E-value=0.013 Score=54.37 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=51.4
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccCHHHHHHHHHHHH
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETIDAHVVKQALLQVI 114 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai 114 (124)
..|.|.+..+ ||+|.+|. .+|..+|++|+.|+|+|.++.++.++.+........-..+.++++|.+++
T Consensus 787 T~i~V~a~Dr-pGLLa~Ia-~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~~~~~~~~~l~~~L~~~L 854 (856)
T PRK03059 787 YILSVSANDR-PGLLYAIA-RVLAEHRVSVHTAKINTLGERVEDTFLIDGSGLSDNRLQIQLETELLDAL 854 (856)
T ss_pred EEEEEEeCCc-chHHHHHH-HHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCCCCHHHHHHHHHHHHHHh
Confidence 3567888888 99999999 99999999999999999999999988873211001112345777776665
No 23
>PRK05092 PII uridylyl-transferase; Provisional
Probab=96.39 E-value=0.028 Score=52.50 Aligned_cols=69 Identities=22% Similarity=0.369 Sum_probs=55.3
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCcc-C---HHHHHHHHHHHHhc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETI-D---AHVVKQALLQVIRN 116 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~-s---~~~ik~aL~~ai~~ 116 (124)
..|.|.+..+ ||+|.+|. .+|.++|++|.+|+++|.++.....+.+... ++..+ + .+.|+++|.+++..
T Consensus 844 t~i~I~~~Dr-pGLl~~I~-~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~-~g~~i~~~~~~~~l~~~L~~~L~~ 916 (931)
T PRK05092 844 TVIEVNGRDR-PGLLYDLT-RALSDLNLNIASAHIATYGERAVDVFYVTDL-FGLKITNEARQAAIRRALLAALAE 916 (931)
T ss_pred EEEEEEECCc-CcHHHHHH-HHHHHCCceEEEEEEEEcCCEEEEEEEEeCC-CCCcCCCHHHHHHHHHHHHHHhcC
Confidence 4678888888 99999999 9999999999999999998888887766532 23333 2 35688888888854
No 24
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=96.38 E-value=0.028 Score=51.88 Aligned_cols=69 Identities=22% Similarity=0.347 Sum_probs=55.6
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEee-ecCceEEEEeeccccCCCCccC----HHHHHHHHHHHHhc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVS-CTDTFSLQAIGGKNEEQGETID----AHVVKQALLQVIRN 116 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS-~~~~f~l~a~~~~~~~~~~~~s----~~~ik~aL~~ai~~ 116 (124)
..|.|.+..+ ||+|.+|. .+|..+||+|++|+|+ +.+|.+++++.+... ++..++ .+.|.++|.+++..
T Consensus 669 t~i~V~~~Dr-pgLla~i~-~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~-~g~~~~~~~~~~~i~~~L~~~L~~ 742 (850)
T TIGR01693 669 TEVFIYAPDQ-PGLFAKVA-GALAMLSLSVHDAQVNTTKDGVALDTFVVQDL-FGSPPAAERVFQELLQGLVDVLAG 742 (850)
T ss_pred EEEEEEeCCC-CcHHHHHH-HHHHHCCCeEEEEEEEEecCCEEEEEEEEECC-CCCCCCcHHHHHHHHHHHHHHHcC
Confidence 4578888888 99999999 9999999999999999 678999998887653 233332 34588888888865
No 25
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.37 E-value=0.078 Score=32.70 Aligned_cols=46 Identities=28% Similarity=0.513 Sum_probs=37.9
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeecc
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGK 93 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~ 93 (124)
.+.|.++.+ ||+|.++. .+|.+.|+++.++.+.+.++.....+...
T Consensus 2 ~l~i~~~d~-~g~l~~i~-~~l~~~~~~I~~~~~~~~~~~~~~~~~v~ 47 (70)
T cd04873 2 VVEVYAPDR-PGLLADIT-RVLADLGLNIHDARISTTGERALDVFYVT 47 (70)
T ss_pred EEEEEeCCC-CCHHHHHH-HHHHHCCCeEEEEEEeecCCEEEEEEEEE
Confidence 467888888 99999999 99999999999999988766555544443
No 26
>PRK04374 PII uridylyl-transferase; Provisional
Probab=96.32 E-value=0.027 Score=52.55 Aligned_cols=67 Identities=19% Similarity=0.307 Sum_probs=53.4
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccC---HHHHHHHHHHHH
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETID---AHVVKQALLQVI 114 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s---~~~ik~aL~~ai 114 (124)
..|.|.+..+ ||+|.+|. .+|..+|++|+.|+|+|.++.++.++.+... ++...+ .+.|+++|..++
T Consensus 797 t~leI~a~Dr-pGLLa~Ia-~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~-~g~~~~~~~~~~l~~~L~~~l 866 (869)
T PRK04374 797 TRISLVAPDR-PGLLADVA-HVLRMQHLRVHDARIATFGERAEDQFQITDE-HDRPLSESARQALRDALCACL 866 (869)
T ss_pred EEEEEEeCCc-CcHHHHHH-HHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcCChHHHHHHHHHHHHHh
Confidence 3567888888 99999999 9999999999999999999999998877543 233232 256777777766
No 27
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.29 E-value=0.03 Score=51.46 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=56.9
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccCHHHHHHHHHHHHhc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETIDAHVVKQALLQVIRN 116 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~~ 116 (124)
..|.|.+..+ ||++.+|. .+|..+|++|++|++.+.||+.+.++.+... .+.....+.++++|.+++..
T Consensus 600 ~~V~V~~~Dr-pGLfa~i~-~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~-~~~~~~~~~l~~~L~~~L~~ 668 (774)
T PRK03381 600 VEVTVVAPDR-RGLLSKAA-GVLALHRLRVRSASVRSHDGVAVLEFVVSPR-FGSPPDAALLRQDLRRALDG 668 (774)
T ss_pred EEEEEEecCC-ccHHHHHH-HHHHHCCCeEEEeEEEecCCEEEEEEEEECC-CCCcchHHHHHHHHHHHHcC
Confidence 5678888999 99999999 9999999999999999999999988776542 23334467788998888765
No 28
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=96.23 E-value=0.0041 Score=48.98 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=38.4
Q ss_pred CchhHHHHhHhhHhhhhcCC-----CCCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN-----SHALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP-----~sk~dKaSIl~daI~YikeL~~~ 43 (124)
||+|=+.+|..|..||..+| .+|..|..+|.-||.||+.|..-
T Consensus 117 ER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~l 164 (228)
T KOG4029|consen 117 ERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKL 164 (228)
T ss_pred hhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHH
Confidence 56777789999999999999 25689999999999999999886
No 29
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=96.19 E-value=0.037 Score=51.70 Aligned_cols=69 Identities=22% Similarity=0.477 Sum_probs=53.0
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEe-eecCceEEEEeeccccCCCCcc--C---HHHHHHHHHHHHhc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARV-SCTDTFSLQAIGGKNEEQGETI--D---AHVVKQALLQVIRN 116 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~v-S~~~~f~l~a~~~~~~~~~~~~--s---~~~ik~aL~~ai~~ 116 (124)
..|.|.+..+ ||++.++. .+|..+|++|++|+| |+.||+.++++.+-.. ++..+ + .+.|.++|.+++..
T Consensus 705 t~V~V~~~Dr-pgLFa~i~-g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~-~g~~~~~~~~r~~~i~~~L~~~L~~ 779 (895)
T PRK00275 705 TQIFIYAPDQ-HDFFAATV-AAMDQLNLNIHDARIITSSSQFTLDTYIVLDD-DGEPIGDNPARIEQIREGLTEALRN 779 (895)
T ss_pred EEEEEEeCCC-CcHHHHHH-HHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC-CCCCccchHHHHHHHHHHHHHHHcC
Confidence 3567778888 99999999 999999999999998 5668999998877543 23321 2 34577888887754
No 30
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=96.11 E-value=0.0058 Score=49.25 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=37.9
Q ss_pred CchhHHHHhHhhHhhhhcCCCC--C--ccccchHHhHHHHHHHHHHcC
Q 048653 1 EHKKAAALHEKLQLLRSITNSH--A--LSKTSIIVDASNYIEELKQKG 44 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP~s--k--~dKaSIl~daI~YikeL~~~g 44 (124)
||+||..|.+.|..|+-.||.. . -+.++||--|..||+.|+.++
T Consensus 67 Ek~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~ 114 (232)
T KOG2483|consen 67 EKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKS 114 (232)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHH
Confidence 6899999999999999999922 2 235889999999999999983
No 31
>PRK03381 PII uridylyl-transferase; Provisional
Probab=96.04 E-value=0.041 Score=50.60 Aligned_cols=55 Identities=20% Similarity=0.274 Sum_probs=46.3
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccC
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETID 102 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s 102 (124)
..|.|.+..+ ||+|.+|. .+|..+|++|++|+|+|.++.++..+.+... ++..++
T Consensus 708 t~i~V~a~Dr-pGLla~Ia-~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~-~g~~~~ 762 (774)
T PRK03381 708 TVLEVRAADR-PGLLARLA-RALERAGVDVRWARVATLGADVVDVFYVTGA-AGGPLA 762 (774)
T ss_pred EEEEEEeCCc-hhHHHHHH-HHHHHCCCeEEEEEEeecCCeEEEEEEEECC-CCCcCc
Confidence 4678888888 99999999 9999999999999999999999998877643 344443
No 32
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=95.97 E-value=0.0075 Score=49.58 Aligned_cols=43 Identities=28% Similarity=0.452 Sum_probs=36.7
Q ss_pred CchhHHHHhHhhHhhhhcCC---CCCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN---SHALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP---~sk~dKaSIl~daI~YikeL~~~ 43 (124)
||+|=+|.||-|.+|+--+- -...-|+=||-.||.||..||.-
T Consensus 126 ERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~L 171 (284)
T KOG3960|consen 126 ERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQAL 171 (284)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHH
Confidence 56777899999999976543 56689999999999999999876
No 33
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.86 E-value=0.069 Score=49.67 Aligned_cols=69 Identities=16% Similarity=0.315 Sum_probs=54.8
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeee-cCceEEEEeeccccCCCCccCH---HHHHHHHHHHHhc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSC-TDTFSLQAIGGKNEEQGETIDA---HVVKQALLQVIRN 116 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~-~~~f~l~a~~~~~~~~~~~~s~---~~ik~aL~~ai~~ 116 (124)
..|.|.+..+ ||+|.+|. .+|..+||+|++|+|.+ .+|..+.++.+... ++..++. +.|+++|.+++..
T Consensus 678 t~V~V~~~Dr-pGLfa~Ia-~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~-~g~~~~~~~~~~l~~~L~~aL~~ 750 (854)
T PRK01759 678 TEIFIYCQDQ-ANLFLKVV-STIGAKKLSIHDAQIITSQDGYVLDSFIVTEL-NGKLLEFDRRRQLEQALTKALNT 750 (854)
T ss_pred EEEEEEecCC-ccHHHHHH-HHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC-CCCCCCHHHHHHHHHHHHHHHcC
Confidence 4678888888 99999999 99999999999999977 78999998877543 3443443 3577888887764
No 34
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=95.71 E-value=0.12 Score=33.82 Aligned_cols=65 Identities=15% Similarity=0.291 Sum_probs=47.4
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCc-eEEEEeeccccCCCCccCHHHHHHHHHHHHhc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDT-FSLQAIGGKNEEQGETIDAHVVKQALLQVIRN 116 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~-f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~~ 116 (124)
+.|.|..+.+ ||++..+. .++.+.|.++.+++.+..++ |++-...... .-+.+.++.+|.+....
T Consensus 3 ~vItv~G~Dr-pGiv~~v~-~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-----~~~~~~l~~~L~~l~~~ 68 (76)
T PF13740_consen 3 LVITVVGPDR-PGIVAAVT-GVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-----EDSLERLESALEELAEE 68 (76)
T ss_dssp EEEEEEEE---TTHHHHHH-HHHHCTT-EEEEEEEEEETTEEEEEEEEEES-----HHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCC-CcHHHHHH-HHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-----cccHHHHHHHHHHHHHH
Confidence 5688999999 99999999 99999999999999999876 4544433221 12667888888776543
No 35
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.39 E-value=0.13 Score=48.06 Aligned_cols=69 Identities=19% Similarity=0.340 Sum_probs=54.2
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec-CceEEEEeeccccCCCCccCH---HHHHHHHHHHHhc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT-DTFSLQAIGGKNEEQGETIDA---HVVKQALLQVIRN 116 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~-~~f~l~a~~~~~~~~~~~~s~---~~ik~aL~~ai~~ 116 (124)
..|.|.+..+ ||+|..|. .+|..+||+|++|+|.+. +|..++++.+... ++..++. +.|+++|.+++..
T Consensus 702 t~V~V~a~Dr-pGLfa~Ia-~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~-~g~~~~~~~~~~I~~~L~~aL~~ 774 (884)
T PRK05007 702 TEIFIWSPDR-PYLFAAVC-AELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP-DGSPLSQDRHQVIRKALEQALTQ 774 (884)
T ss_pred EEEEEEecCC-cCHHHHHH-HHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC-CCCCCCHHHHHHHHHHHHHHHcC
Confidence 4678888888 99999999 999999999999998766 6799998877543 3333443 3488888888854
No 36
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.28 E-value=0.12 Score=48.06 Aligned_cols=69 Identities=16% Similarity=0.376 Sum_probs=53.5
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEe-eecCceEEEEeeccccCCCCccC---HHHHHHHHHHHHhc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARV-SCTDTFSLQAIGGKNEEQGETID---AHVVKQALLQVIRN 116 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~v-S~~~~f~l~a~~~~~~~~~~~~s---~~~ik~aL~~ai~~ 116 (124)
..|-|.+..+ ||++.++. .+|...||+|++|++ ++.||+.++++.+... ++...+ .+.|+++|.+++..
T Consensus 679 ~~v~i~~~d~-~gLFa~i~-g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~-~~~~~~~~~~~~i~~~l~~~l~~ 751 (856)
T PRK03059 679 LQVMVYTPDQ-PDLFARIC-GYFDRAGFSILDARVHTTRHGYALDTFQVLDP-EEDVHYRDIINLVEHELAERLAE 751 (856)
T ss_pred EEEEEEecCC-CcHHHHHH-HHHHHCCCceeeeEEEEcCCCeEEEEEEEeCC-CCCCChHHHHHHHHHHHHHHHcC
Confidence 4667788888 99999999 999999999999999 5678999999887643 222112 45577777777754
No 37
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.23 E-value=0.15 Score=47.65 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=52.9
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeee-cCceEEEEeeccccCCCCcc----CHHHHHHHHHHHHh
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSC-TDTFSLQAIGGKNEEQGETI----DAHVVKQALLQVIR 115 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~-~~~f~l~a~~~~~~~~~~~~----s~~~ik~aL~~ai~ 115 (124)
..|.|.+..+ ||+|.+|. .+|..+|++|++|++++ .+|+++.++.+... ++... ..+.|.++|.+++.
T Consensus 733 t~v~I~~~Dr-~GLfa~i~-~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~-~g~~~~~~~~~~~l~~~L~~~l~ 805 (931)
T PRK05092 733 TEVTVLAADH-PGLFSRIA-GACAAAGANIVDARIFTTTDGRALDTFWIQDA-FGRDEDEPRRLARLAKAIEDALS 805 (931)
T ss_pred EEEEEEeCCC-CcHHHHHH-HHHHHCCCcEEEEEEEEecCCeEEEEEEEECC-CCCCCCCHHHHHHHHHHHHHHHc
Confidence 4677888888 99999999 99999999999999887 58999998766432 22222 25567888888774
No 38
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=95.22 E-value=0.12 Score=47.74 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=48.7
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccC---HHHHHHHHHHHH
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETID---AHVVKQALLQVI 114 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s---~~~ik~aL~~ai 114 (124)
..|.|.+..+ ||+|.+|. ++|.++|++|.+|.+++.++-....+..... .+..++ .+.|+++|..++
T Consensus 780 t~~~v~~~Dr-pGll~~i~-~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~-~g~~~~~~~~~~l~~~L~~~l 849 (850)
T TIGR01693 780 TIMEVRALDR-PGLLARVG-RTLEELGLSIQSAKITTFGEKAEDVFYVTDL-FGLKLTDEEEQRLLEVLAASV 849 (850)
T ss_pred EEEEEEECCc-cHHHHHHH-HHHHHCCCeEEEEEEEecCccceeEEEEECC-CCCCCCHHHHHHHHHHHHHHh
Confidence 4678889999 99999999 9999999999999999987554444443321 233333 355777776654
No 39
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=95.03 E-value=0.5 Score=30.57 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=30.3
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
+.++|.+..+ ||+|.+|. .++.+.|.++.+.++...
T Consensus 7 ~~l~i~~~dr-~GlL~dI~-~~i~~~~~nI~~i~~~~~ 42 (80)
T PF13291_consen 7 VRLRIEAEDR-PGLLADIT-SVISENGVNIRSINARTN 42 (80)
T ss_dssp EEEEEEEE---TTHHHHHH-HHHHCSSSEEEEEEEEE-
T ss_pred EEEEEEEEcC-CCHHHHHH-HHHHHCCCCeEEEEeEEe
Confidence 3567888899 99999999 999999999999999985
No 40
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.03 E-value=0.15 Score=47.75 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=53.9
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeee-cCceEEEEeeccccCCCCccCHHHHHHHHHHHHhc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSC-TDTFSLQAIGGKNEEQGETIDAHVVKQALLQVIRN 116 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~-~~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~~ 116 (124)
..|-|.+..+ ||++.+|. .+|...|++|++|++.+ .||+.+.++.+...+....-....|.++|.+++..
T Consensus 691 ~~v~v~~~d~-~gLFa~i~-g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~ 761 (869)
T PRK04374 691 LEVFVYSPDR-DGLFAAIV-ATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYADGDPQRLAAALRQVLAG 761 (869)
T ss_pred EEEEEEeCCC-ccHHHHHH-HHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcC
Confidence 4667788888 99999999 99999999999999987 58999999887643221112345577888777765
No 41
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.29 E-value=0.53 Score=30.43 Aligned_cols=63 Identities=16% Similarity=0.260 Sum_probs=48.2
Q ss_pred EEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCc-eEEEEeeccccCCCCccCHHHHHHHHHHHHh
Q 048653 47 INLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDT-FSLQAIGGKNEEQGETIDAHVVKQALLQVIR 115 (124)
Q Consensus 47 v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~-f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~ 115 (124)
|.|....+ ||++..+- ++|.+.|.++.+.+.++.++ |.+.....-. ...+.+.++++|...-.
T Consensus 2 vtv~G~Dr-pGiv~~vt-~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p----~~~~~~~l~~~l~~l~~ 65 (75)
T cd04870 2 ITVTGPDR-PGLTSALT-EVLAAHGVRILDVGQAVIHGRLSLGILVQIP----DSADSEALLKDLLFKAH 65 (75)
T ss_pred EEEEcCCC-CCHHHHHH-HHHHHCCCCEEecccEEEcCeeEEEEEEEcC----CCCCHHHHHHHHHHHHH
Confidence 57788889 99999999 99999999999997777764 6665544321 22578888888876643
No 42
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.16 E-value=0.73 Score=29.49 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=46.5
Q ss_pred EEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec---CceEEEEeeccccCCCCccCHHHHHHHHHHHHh
Q 048653 47 INLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT---DTFSLQAIGGKNEEQGETIDAHVVKQALLQVIR 115 (124)
Q Consensus 47 v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~---~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~ 115 (124)
|.|.|..+ ||++.+|. +.|.+.|.++.+.+..+. .-|.+.....-. ....+..+++++|...-.
T Consensus 2 i~v~g~D~-~Giv~~it-~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~---~~~~~~~~l~~~l~~l~~ 68 (74)
T cd04875 2 LTLSCPDR-PGIVAAVS-GFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE---GFDLSREALEAAFAPVAA 68 (74)
T ss_pred EEEEcCCC-CCHHHHHH-HHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC---CCCCCHHHHHHHHHHHHH
Confidence 57889999 99999999 999999999999987752 234554433221 113578889888876543
No 43
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.99 E-value=0.54 Score=29.59 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=31.3
Q ss_pred EEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC
Q 048653 47 INLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD 83 (124)
Q Consensus 47 v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~ 83 (124)
++|.+..+ ||.|.+|+ .++.+.|.++.+.++...+
T Consensus 2 l~v~~~d~-~g~L~~i~-~~i~~~~~nI~~v~~~~~~ 36 (74)
T cd04887 2 LRLELPNR-PGMLGRVT-TAIGEAGGDIGAIDLVEQG 36 (74)
T ss_pred EEEEeCCC-CchHHHHH-HHHHHcCCcEEEEEEEEec
Confidence 67888899 99999999 9999999999998887653
No 44
>PRK00194 hypothetical protein; Validated
Probab=93.72 E-value=0.52 Score=31.25 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=46.1
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCc-eEEEEeeccccCCCCccCHHHHHHHHHHHH
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDT-FSLQAIGGKNEEQGETIDAHVVKQALLQVI 114 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~-f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai 114 (124)
+.+.|.|..+ ||++.++. +.|.+.|+++.+.+..+.++ |.+..... .. ....+...+++.|.+.-
T Consensus 4 ~~ltv~g~Dr-pGiva~vt-~~la~~g~nI~~~~~~~~~~~~~~~~~v~-~~--~~~~~~~~l~~~l~~l~ 69 (90)
T PRK00194 4 AIITVIGKDK-VGIIAGVS-TVLAELNVNILDISQTIMDGYFTMIMLVD-IS--ESKKDFAELKEELEELG 69 (90)
T ss_pred EEEEEEcCCC-CCHHHHHH-HHHHHcCCCEEehhhHhhCCeeEEEEEEE-ec--CCCCCHHHHHHHHHHHH
Confidence 4578899999 99999999 99999999999987666544 44433322 11 11345778887776643
No 45
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.37 E-value=0.72 Score=30.62 Aligned_cols=67 Identities=18% Similarity=0.329 Sum_probs=49.4
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC-ceEEEEeeccccCCCCccCHHHHHHHHHHHHhc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD-TFSLQAIGGKNEEQGETIDAHVVKQALLQVIRN 116 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~-~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~~ 116 (124)
+.|.+.|+.+ ||++..+. +.|-+.|.++.+.+..+.+ -|.+....... +...+...++.+|...-..
T Consensus 2 ~vl~i~g~D~-pGiva~vt-~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~---~~~~~~~~L~~~l~~l~~~ 69 (88)
T cd04872 2 AVITVVGKDR-VGIVAGVS-TKLAELNVNILDISQTIMDGYFTMIMIVDIS---ESNLDFAELQEELEELGKE 69 (88)
T ss_pred EEEEEEcCCC-CCHHHHHH-HHHHHcCCCEEechhHhhCCccEEEEEEEeC---CCCCCHHHHHHHHHHHHHH
Confidence 4678999999 99999999 9999999999998766654 35555443321 1245678888888776543
No 46
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=93.26 E-value=1.4 Score=28.23 Aligned_cols=64 Identities=13% Similarity=0.252 Sum_probs=47.5
Q ss_pred EEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC-------ceEEEEeeccccCCCCccCHHHHHHHHHHHHhc
Q 048653 47 INLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD-------TFSLQAIGGKNEEQGETIDAHVVKQALLQVIRN 116 (124)
Q Consensus 47 v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~-------~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~~ 116 (124)
|.|.|..+ ||++.+|- +.|.+.|+++.+.+....+ .|.+.....-. ...+...++.+|...-..
T Consensus 2 l~v~g~D~-~Giv~~it-~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p----~~~~~~~l~~~l~~l~~~ 72 (81)
T cd04869 2 VEVVGNDR-PGIVHEVT-QFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP----AGTDLDALREELEELCDD 72 (81)
T ss_pred EEEEeCCC-CCHHHHHH-HHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC----CCCCHHHHHHHHHHHHHH
Confidence 67889999 99999999 9999999999999887654 24444333221 235788888888776544
No 47
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.15 E-value=0.81 Score=27.72 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=28.6
Q ss_pred EEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 48 NLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 48 ~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
.|.++.+ ||.|.+++ +++.+.|.++.+.+....
T Consensus 2 ~v~~~d~-~G~L~~i~-~~i~~~~~nI~~i~~~~~ 34 (73)
T cd04886 2 RVELPDR-PGQLAKLL-AVIAEAGANIIEVSHDRA 34 (73)
T ss_pred EEEeCCC-CChHHHHH-HHHHHcCCCEEEEEEEec
Confidence 5677888 99999999 999999999998876643
No 48
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.85 E-value=1.3 Score=27.55 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=41.7
Q ss_pred CeeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec--CceEEEEeeccccCCCCccCHHHHHHHHHHH
Q 048653 44 GFMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT--DTFSLQAIGGKNEEQGETIDAHVVKQALLQV 113 (124)
Q Consensus 44 g~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~--~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~a 113 (124)
|..+.+.++.+ ||.|.+++ +.|.+.|+++.+...... ++...-.+..+. .+.+.++++|.+.
T Consensus 1 g~~~~v~~~d~-pG~l~~i~-~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~------~~~~~~~~~L~~~ 64 (72)
T cd04883 1 SSQIEVRVPDR-PGQLADIA-AIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT------MNPRPIIEDLRRA 64 (72)
T ss_pred CcEEEEEECCC-CCHHHHHH-HHHHHcCCCEEEEEEeccCCCCeEEEEEEEec------CCHHHHHHHHHHC
Confidence 34577888899 99999999 999999999987764433 234333333331 2445777776543
No 49
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.56 E-value=1.5 Score=26.89 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=31.6
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
|.++|.+..+ ||.|.+++ ..|.+.|.++.+.+....
T Consensus 1 ~yl~i~~~d~-~g~l~~i~-~~l~~~~i~I~~~~~~~~ 36 (79)
T cd04881 1 YYLRLTVKDK-PGVLAKIT-GILAEHGISIESVIQKEA 36 (79)
T ss_pred CEEEEEeCCC-CcHHHHHH-HHHHHcCCCeEEEEEccc
Confidence 4578888999 99999999 999999999999887654
No 50
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=92.53 E-value=1.9 Score=28.09 Aligned_cols=64 Identities=23% Similarity=0.348 Sum_probs=47.8
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCc-eEEEEeeccccCCCCccCHHHHHHHHHHHHh
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDT-FSLQAIGGKNEEQGETIDAHVVKQALLQVIR 115 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~-f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~ 115 (124)
+.+.+.|..+ ||+..++- +.|.+.|.++.+++....++ |.+-...... ..+...+.+++...-.
T Consensus 2 ~iltv~g~Dr-~GiVa~vs-~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~-----~~~~~~l~~~l~~~~~ 66 (77)
T cd04893 2 LVISALGTDR-PGILNELT-RAVSESGCNILDSRMAILGTEFALTMLVEGS-----WDAIAKLEAALPGLAR 66 (77)
T ss_pred EEEEEEeCCC-ChHHHHHH-HHHHHcCCCEEEceeeEEcCEEEEEEEEEec-----cccHHHHHHHHHHHHH
Confidence 4578899999 99999999 99999999999988777654 5444433321 2367788887776543
No 51
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=92.52 E-value=1.1 Score=25.95 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=30.1
Q ss_pred EEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC
Q 048653 47 INLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD 83 (124)
Q Consensus 47 v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~ 83 (124)
++|.+..+ ||.+..++ +.|.+.++++.+..+...+
T Consensus 1 l~v~~~~~-~~~l~~i~-~~l~~~~~~i~~~~~~~~~ 35 (71)
T cd04876 1 IRVEAIDR-PGLLADIT-TVIAEEKINILSVNTRTDD 35 (71)
T ss_pred CEEEEecc-CcHHHHHH-HHHHhCCCCEEEEEeEECC
Confidence 35778888 99999999 9999999999998877654
No 52
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=92.41 E-value=1.9 Score=27.65 Aligned_cols=37 Identities=8% Similarity=0.149 Sum_probs=32.9
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCce
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTF 85 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f 85 (124)
.++|.+..+ +|+|.+|+ .++.+.|.++.+.++... ++
T Consensus 2 ~l~I~~~dr-~Gll~dI~-~~i~~~~~nI~~~~~~~~-~~ 38 (74)
T cd04877 2 RLEITCEDR-LGITQEVL-DLLVEHNIDLRGIEIDPK-GR 38 (74)
T ss_pred EEEEEEEcc-chHHHHHH-HHHHHCCCceEEEEEecC-Ce
Confidence 478899999 99999999 999999999999998765 44
No 53
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=92.05 E-value=0.084 Score=48.63 Aligned_cols=41 Identities=22% Similarity=0.220 Sum_probs=35.8
Q ss_pred chhHHHHhHhhHhhhhcCC-----CCCccccchHHhHHHHHHHHHH
Q 048653 2 HKKAAALHEKLQLLRSITN-----SHALSKTSIIVDASNYIEELKQ 42 (124)
Q Consensus 2 R~RR~klnerl~~LRslvP-----~sk~dKaSIl~daI~YikeL~~ 42 (124)
|-||.|=|+-||.|.-++| .+..|||||+-=||.|++-=+-
T Consensus 55 RsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRlrk~ 100 (768)
T KOG3558|consen 55 RSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRLRKF 100 (768)
T ss_pred hhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 6789999999999999999 5778999999999999875443
No 54
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.01 E-value=0.61 Score=43.88 Aligned_cols=67 Identities=19% Similarity=0.365 Sum_probs=48.3
Q ss_pred CeeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccCHHHHHHHHHHHH
Q 048653 44 GFMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETIDAHVVKQALLQVI 114 (124)
Q Consensus 44 g~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai 114 (124)
...++|....+ ||+|..+- ..|.+++|++++|+|++++.-+..++.+-.. .+..++ .++++.+.+.+
T Consensus 791 ~t~lEv~alDR-pGLLa~v~-~v~~dl~l~i~~AkItT~GErveD~F~vt~~-~~~~l~-~~~~q~l~~~l 857 (867)
T COG2844 791 KTVLEVRALDR-PGLLAALA-GVFADLGLSLHSAKITTFGERVEDVFIVTDA-DGQALN-AELRQSLLQRL 857 (867)
T ss_pred ceEEEEEeCCc-ccHHHHHH-HHHHhcccceeeeeeccccccceeEEEEecc-ccccCC-HHHHHHHHHHH
Confidence 45678889999 99999999 9999999999999999998655555544322 233343 34555555443
No 55
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.41 E-value=1.7 Score=27.05 Aligned_cols=35 Identities=6% Similarity=0.201 Sum_probs=30.2
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
.+.|.++.+ ||.|.++. +.|.+.|+++.+......
T Consensus 3 ~~~v~~~d~-~G~L~~l~-~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPDE-PGVIAEVT-QILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEcCCC-CCHHHHHH-HHHHHcCCCceeeEeEEe
Confidence 567888999 99999999 999999999988765554
No 56
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.92 E-value=1.9 Score=26.98 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=30.3
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
.+.|.+..+ ||.|.+|+ +++.+.|.++...+.+..
T Consensus 2 ~l~i~~~d~-~g~l~~I~-~~la~~~inI~~i~~~~~ 36 (76)
T cd04888 2 TLSLLLEHR-PGVLSKVL-NTIAQVRGNVLTINQNIP 36 (76)
T ss_pred EEEEEecCC-CchHHHHH-HHHHHcCCCEEEEEeCCC
Confidence 467888888 99999999 999999999999876543
No 57
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.74 E-value=2.1 Score=25.88 Aligned_cols=34 Identities=21% Similarity=0.210 Sum_probs=28.9
Q ss_pred EEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 47 INLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 47 v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
+.|..+.+ ||.|.+++ +.|.+.|.++.+...+..
T Consensus 2 i~v~~~d~-pG~L~~i~-~~l~~~~~nI~~i~~~~~ 35 (65)
T cd04882 2 LAVEVPDK-PGGLHEIL-QILSEEGINIEYMYAFVE 35 (65)
T ss_pred EEEEeCCC-CcHHHHHH-HHHHHCCCChhheEEEcc
Confidence 56778899 99999999 999999999987765444
No 58
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=90.40 E-value=1.3 Score=30.56 Aligned_cols=45 Identities=24% Similarity=0.225 Sum_probs=36.3
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC--ceEEEEeec
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD--TFSLQAIGG 92 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~--~f~l~a~~~ 92 (124)
.+.+..+.. ||.|.++- ..|...|+++.+..++..+ +++--++.+
T Consensus 4 ~isvlVeN~-~GVL~Rit-~lFsRRg~NI~SLtvg~Te~~~iSRmtivv 50 (84)
T PRK13562 4 ILKLQVADQ-VSTLNRIT-SAFVRLQYNIDTLHVTHSEQPGISNMEIQV 50 (84)
T ss_pred EEEEEEECC-CCHHHHHH-HHHhccCcCeeeEEecccCCCCceEEEEEE
Confidence 467889999 99999999 9999999999998888775 444334444
No 59
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=90.23 E-value=0.2 Score=45.49 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=33.9
Q ss_pred chhHHHHhHhhHhhhhcCC-----CCCccccchHHhHHHHHH
Q 048653 2 HKKAAALHEKLQLLRSITN-----SHALSKTSIIVDASNYIE 38 (124)
Q Consensus 2 R~RR~klnerl~~LRslvP-----~sk~dKaSIl~daI~Yik 38 (124)
.+-|++||.-|..|-||.| |+|.||-|||-=++.|++
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 3568999999999999999 899999999999999975
No 60
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.08 E-value=2.3 Score=26.88 Aligned_cols=34 Identities=12% Similarity=0.363 Sum_probs=29.2
Q ss_pred EEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 47 INLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 47 v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
+.|..+.+ ||.|.+++ +.|.+.|.++.+......
T Consensus 2 l~v~~~d~-pG~L~~l~-~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDK-PGTLKPVV-DTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCC-CccHHHHH-HHHHHCCCeEEEEEeccc
Confidence 46777888 99999999 999999999998866654
No 61
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=89.60 E-value=2 Score=32.52 Aligned_cols=63 Identities=17% Similarity=0.312 Sum_probs=43.0
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC--ceEEEEeeccccCCCCccCHHHHHHHHHHHH
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD--TFSLQAIGGKNEEQGETIDAHVVKQALLQVI 114 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~--~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai 114 (124)
.+.|..+.+ ||.|.++. ..|...|+++.+..++..+ +.+.-++.+. +..-..+.+...|.+.+
T Consensus 3 ~isI~ven~-pGvL~rI~-~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~----~d~~~i~qi~kQl~Kli 67 (157)
T TIGR00119 3 ILSVLVENE-PGVLSRVA-GLFTRRGFNIESLTVGPTEDPDLSRMTIVVV----GDDKVLEQITKQLNKLV 67 (157)
T ss_pred EEEEEEcCC-CcHHHHHH-HHHHhCCceEEEEEEeecCCCCEEEEEEEEE----CCHHHHHHHHHHHhcCc
Confidence 467888999 99999999 9999999999999888775 4443333332 11123445555554433
No 62
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=89.00 E-value=1.3 Score=24.02 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=28.9
Q ss_pred EEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC
Q 048653 48 NLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD 83 (124)
Q Consensus 48 ~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~ 83 (124)
.+.+... +|.+.+++ +.|...|+++.....+..+
T Consensus 2 ~i~~~~~-~~~l~~i~-~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 2 TVSGPDR-PGLLAKVL-SVLAEAGINITSIEQRTSG 35 (60)
T ss_pred EEEecCC-CchHHHHH-HHHHHCCCcEEEEEeEEcC
Confidence 5667777 99999999 9999999999998876543
No 63
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=89.00 E-value=2.3 Score=28.68 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=31.9
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD 83 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~ 83 (124)
.+.+..+.+ ||.|.++. ..|...|+++.+-+++..+
T Consensus 4 tisi~v~n~-pGVL~Ri~-~lf~rRgfNI~Sl~vg~te 39 (76)
T PRK06737 4 TFSLVIHND-PSVLLRIS-GIFARRGYYISSLNLNERD 39 (76)
T ss_pred EEEEEEecC-CCHHHHHH-HHHhccCcceEEEEecccC
Confidence 467888999 99999999 9999999999988888655
No 64
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=88.92 E-value=0.31 Score=43.07 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=35.1
Q ss_pred chhHHHHhHhhHhhhhcCC-----CCCccccchHHhHHHHHHHH
Q 048653 2 HKKAAALHEKLQLLRSITN-----SHALSKTSIIVDASNYIEEL 40 (124)
Q Consensus 2 R~RR~klnerl~~LRslvP-----~sk~dKaSIl~daI~YikeL 40 (124)
|.||++=|--|+.|-.+.| .+..|||||+-=|-.|||.=
T Consensus 10 ~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 10 RTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred HHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 7899999999999999999 35589999999999999853
No 65
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=88.83 E-value=3.2 Score=27.92 Aligned_cols=36 Identities=11% Similarity=0.228 Sum_probs=31.9
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD 83 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~ 83 (124)
.+.+..+.+ ||.|.+++ ..|..-|+++.+-++...+
T Consensus 5 ~lsi~v~n~-pGVL~Ri~-~lf~rRGfnI~sl~v~~t~ 40 (76)
T PRK11152 5 QLTIKARFR-PEVLERVL-RVVRHRGFQVCSMNMTQNT 40 (76)
T ss_pred EEEEEEECC-ccHHHHHH-HHHhcCCeeeeeEEeeecC
Confidence 467788899 99999999 9999999999998888754
No 66
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=88.77 E-value=3.8 Score=33.54 Aligned_cols=67 Identities=12% Similarity=0.240 Sum_probs=49.8
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeee--cCc-eEEEEeeccccCCCCccCHHHHHHHHHHHHhc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSC--TDT-FSLQAIGGKNEEQGETIDAHVVKQALLQVIRN 116 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~--~~~-f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~~ 116 (124)
+.|.|.+..+ ||++..+- ++|.+.|.++.+.+.++ ..| |.+.....- +....+.++++++|...-..
T Consensus 7 ~vitv~G~Dr-pGIVa~Vt-~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~---~~~~~~~~~L~~~L~~l~~~ 76 (286)
T PRK06027 7 YVLTLSCPDR-PGIVAAVS-NFLYEHGGNIVDADQFVDPETGRFFMRVEFEG---DGLIFNLETLRADFAALAEE 76 (286)
T ss_pred EEEEEECCCC-CcHHHHHH-HHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe---CCCCCCHHHHHHHHHHHHHH
Confidence 4678999999 99999999 99999999999999888 544 555443322 12234678888888766443
No 67
>PRK08577 hypothetical protein; Provisional
Probab=88.68 E-value=4.8 Score=29.03 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=32.3
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD 83 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~ 83 (124)
+.+.|.+..+ ||.|.+++ ..|.+.+.++.+.+..+..
T Consensus 57 ~~I~V~~~Dr-~GvLa~I~-~~l~~~~inI~~i~~~~~~ 93 (136)
T PRK08577 57 VEIELVVEDR-PGVLAKIT-GLLAEHGVDILATECEELK 93 (136)
T ss_pred EEEEEEEcCC-CCHHHHHH-HHHHHCCCCEEEEEEEEec
Confidence 5678889999 99999999 9999999999988776653
No 68
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=88.52 E-value=4.6 Score=25.66 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=28.9
Q ss_pred EEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCc
Q 048653 49 LFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDT 84 (124)
Q Consensus 49 V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~ 84 (124)
+.++.+ ||.|.+++ +.|.+.|+++.+..+....+
T Consensus 4 ~~l~d~-pG~L~~vL-~~f~~~~vni~~I~Srp~~~ 37 (75)
T cd04880 4 FSLKNK-PGALAKAL-KVFAERGINLTKIESRPSRK 37 (75)
T ss_pred EEeCCc-CCHHHHHH-HHHHHCCCCEEEEEeeecCC
Confidence 455677 99999999 99999999999997776653
No 69
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=88.50 E-value=4.3 Score=25.28 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=31.2
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCc
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDT 84 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~ 84 (124)
.+.|..+.+ ||.|.+++ ++|.+-|+++.+.-++...+
T Consensus 3 ri~v~v~d~-pG~La~v~-~~l~~~~inI~~i~~~~~~~ 39 (66)
T cd04908 3 QLSVFLENK-PGRLAAVT-EILSEAGINIRALSIADTSE 39 (66)
T ss_pred EEEEEEcCC-CChHHHHH-HHHHHCCCCEEEEEEEecCC
Confidence 356778888 99999999 99999999999887665544
No 70
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=88.28 E-value=0.24 Score=46.93 Aligned_cols=43 Identities=23% Similarity=0.473 Sum_probs=39.6
Q ss_pred CchhHHHHhHhhHhhhhcCC--CCCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN--SHALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP--~sk~dKaSIl~daI~YikeL~~~ 43 (124)
|+|=|--+|+|...||-+|| -.|+.|.+.+--||+||++|+..
T Consensus 284 EKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~ 328 (953)
T KOG2588|consen 284 EKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGY 328 (953)
T ss_pred HHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhcc
Confidence 45667889999999999999 78999999999999999999987
No 71
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=87.50 E-value=6 Score=32.47 Aligned_cols=66 Identities=12% Similarity=0.211 Sum_probs=50.4
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC---ceEEEEeeccccCCCCccCHHHHHHHHHHHHhc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD---TFSLQAIGGKNEEQGETIDAHVVKQALLQVIRN 116 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~---~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~~ 116 (124)
+.|.|.|..+ ||+...+- ..|-++|+++.+.+..+.. -|.|.+...- ....+..+++++|...-..
T Consensus 8 ~vitv~G~Dr-pGIVa~VT-~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~----p~~~~~~~L~~~L~~l~~~ 76 (286)
T PRK13011 8 FVLTLSCPSA-AGIVAAVT-GFLAEHGCYITELHSFDDRLSGRFFMRVEFHS----EEGLDEDALRAGFAPIAAR 76 (286)
T ss_pred EEEEEEeCCC-CCHHHHHH-HHHHhCCCCEEEeeeeecCCCCeEEEEEEEec----CCCCCHHHHHHHHHHHHHH
Confidence 5688999999 99999999 9999999999998886442 4666554322 1245788999998876543
No 72
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=87.30 E-value=3.8 Score=31.18 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=32.1
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD 83 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~ 83 (124)
.+.|..+.+ ||.|.+|. ..|...|+++.+..+...+
T Consensus 4 ~IsV~veN~-pGvL~rI~-~lf~rrg~NI~Sl~v~~te 39 (161)
T PRK11895 4 TLSVLVENE-PGVLSRVA-GLFSRRGYNIESLTVGPTE 39 (161)
T ss_pred EEEEEEcCC-CcHHHHHH-HHHHhCCCcEEEEEeeecC
Confidence 467888999 99999999 9999999999998887764
No 73
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.44 E-value=5.3 Score=24.07 Aligned_cols=36 Identities=14% Similarity=0.263 Sum_probs=31.1
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD 83 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~ 83 (124)
.+.+.+... ||.|.+++ +.|++.+.++.+.+....+
T Consensus 2 ~l~i~~~d~-~g~l~~i~-~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDK-PGVLRDLT-GVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCC-CChHHHHH-HHHHhCCCCEEEEEEeccC
Confidence 367788888 99999999 9999999999988877653
No 74
>PRK04435 hypothetical protein; Provisional
Probab=85.94 E-value=5.6 Score=29.44 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=32.2
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec-Cc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT-DT 84 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~-~~ 84 (124)
+.+.+.++.+ ||.|.+|+ +.+.+.|.+|...+.+.. +|
T Consensus 70 vtL~i~l~Dr-~GlLs~Il-~~IA~~~aNIltI~q~i~~~g 108 (147)
T PRK04435 70 ITLSLLLEDR-SGTLSKVL-NVIAEAGGNILTINQSIPLQG 108 (147)
T ss_pred EEEEEEEecC-CCHHHHHH-HHHHHcCCCeEEEEEEcCCCC
Confidence 5677888888 99999999 999999999998876543 45
No 75
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.65 E-value=5.7 Score=23.75 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=29.2
Q ss_pred EEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeee
Q 048653 47 INLFSKKSCPGLLVSILGSAFEELALNVLEARVSC 81 (124)
Q Consensus 47 v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~ 81 (124)
+.+....+ ||.|.++. ..|.+.|.++.+.....
T Consensus 2 l~i~~~d~-~g~l~~i~-~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDK-PGAIAKVT-SVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCC-CChHHHHH-HHHHHcCcCeeeeEEEe
Confidence 56778888 99999999 99999999999887765
No 76
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=84.98 E-value=7.2 Score=30.07 Aligned_cols=63 Identities=13% Similarity=0.265 Sum_probs=45.4
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec--CceE-EEEeeccccCCCCccCHHHHHHHHHHHHh
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT--DTFS-LQAIGGKNEEQGETIDAHVVKQALLQVIR 115 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~--~~f~-l~a~~~~~~~~~~~~s~~~ik~aL~~ai~ 115 (124)
.+.|..+.+ ||.|.++. ..|...|+++.+.++... .+.+ +.....+ +... .+++...|.+.+.
T Consensus 4 ~isvlv~n~-PGVL~RIt-~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~----~~~~-ieqL~kQL~KLid 69 (174)
T CHL00100 4 TLSVLVEDE-SGVLTRIA-GLFARRGFNIESLAVGPAEQKGISRITMVVPG----DDRT-IEQLTKQLYKLVN 69 (174)
T ss_pred EEEEEEeCc-CCHHHHHH-HHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC----CHHH-HHHHHHHHHHHhH
Confidence 467889999 99999999 999999999999888763 3443 2222222 1222 6788888887765
No 77
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=84.92 E-value=5.2 Score=23.88 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=29.3
Q ss_pred EEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC
Q 048653 48 NLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD 83 (124)
Q Consensus 48 ~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~ 83 (124)
.|.++.+ ||.|.++. +.|.+-|.++....+...+
T Consensus 2 ~v~~~d~-~G~l~~i~-~~l~~~~inI~~~~~~~~~ 35 (56)
T cd04889 2 SVFVENK-PGRLAEVT-EILAEAGINIKAISIAETR 35 (56)
T ss_pred EEEeCCC-CChHHHHH-HHHHHcCCCEeeEEEEEcc
Confidence 4667788 99999999 9999999999888877655
No 78
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=84.79 E-value=6.2 Score=23.43 Aligned_cols=42 Identities=14% Similarity=0.320 Sum_probs=33.6
Q ss_pred EEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC--ceEEEEe
Q 048653 47 INLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD--TFSLQAI 90 (124)
Q Consensus 47 v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~--~f~l~a~ 90 (124)
+.|..+.+ ||.|.+++ +.|.+.|+++.+.++.... +...-.+
T Consensus 2 l~v~~~d~-~g~l~~i~-~~l~~~~~nI~~~~~~~~~~~~~~~~~~ 45 (71)
T cd04879 2 LLIVHKDV-PGVIGKVG-TILGEHGINIAAMQVGRKEKGGIAYMVL 45 (71)
T ss_pred EEEEecCC-CCHHHHHH-HHHHhcCCCeeeEEEeccCCCCEEEEEE
Confidence 45778888 99999999 9999999999999887654 5544333
No 79
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=84.66 E-value=6.4 Score=32.43 Aligned_cols=68 Identities=13% Similarity=0.241 Sum_probs=48.9
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEee---ecCceEEEEeeccccCCCCccCHHHHHHHHHHHHhc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVS---CTDTFSLQAIGGKNEEQGETIDAHVVKQALLQVIRN 116 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS---~~~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~~ 116 (124)
+.|.|.|..+ ||+...+- +.|-+.|.++.+++-. ..+.|.+-...... .....+..+++++|...-..
T Consensus 10 ~iitv~G~Dr-~GIVA~Vs-~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~--~~~~~~~~~l~~~l~~l~~~ 80 (289)
T PRK13010 10 YVLTLACPSA-PGIVAAVS-GFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQ--SAEAASVDTFRQEFQPVAEK 80 (289)
T ss_pred EEEEEECCCC-CCcHHHHH-HHHHHCCCCEEecccccccccCcEEEEEEEEcC--CCCCCCHHHHHHHHHHHHHH
Confidence 5688999999 99999999 9999999999998873 33455444322211 01246788999988775443
No 80
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=83.97 E-value=4 Score=26.01 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=23.4
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEeeecC
Q 048653 56 PGLLVSILGSAFEELALNVLEARVSCTD 83 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~vS~~~ 83 (124)
||.|.+|+ ..|..-|+++.+-+++..+
T Consensus 3 ~GvL~Ri~-~vf~rRg~nI~sl~v~~~~ 29 (63)
T PF13710_consen 3 PGVLNRIT-GVFRRRGFNIESLSVGPTE 29 (63)
T ss_dssp TTHHHHHH-HHHHTTT-EECEEEEEE-S
T ss_pred cHHHHHHH-HHHhcCCeEEeeEEeeecC
Confidence 99999999 9999999999999988843
No 81
>PRK07334 threonine dehydratase; Provisional
Probab=83.65 E-value=20 Score=30.36 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=35.6
Q ss_pred HHHHcC--eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 39 ELKQKG--FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 39 eL~~~g--~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
.|...| +.++|.+..+ +|+|.+|+ ..+.+.+.+|.+++....
T Consensus 319 ~l~~~~y~v~l~I~~~dr-~GlL~dI~-~~is~~~~nI~~v~~~~~ 362 (403)
T PRK07334 319 GLVRAGRLARLRVDIRDR-PGALARVT-ALIGEAGANIIEVSHQRL 362 (403)
T ss_pred HHHhCCCEEEEEEEeCCC-CCHHHHHH-HHHhhCCCceEEEEEEec
Confidence 444447 6778899999 99999999 999999999999987754
No 82
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=83.25 E-value=11 Score=30.81 Aligned_cols=62 Identities=11% Similarity=0.161 Sum_probs=47.6
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec---CceEEEEeeccccCCCCccCHHHHHHHHHH
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT---DTFSLQAIGGKNEEQGETIDAHVVKQALLQ 112 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~---~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ 112 (124)
.+.|.|..+ ||+...+- +.|-+.|.++.+++-+.. +-|.|-....-. +...+.+++++++..
T Consensus 2 ~itv~g~D~-~GIVA~Vt-~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~---~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQ-KGLVAAIS-TFIAKHGANIISNDQHTDPETGRFFMRVEFQLE---GFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCC-CChHHHHH-HHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC---CCCCCHHHHHHHHHH
Confidence 468899999 99999999 999999999999987764 346655433321 224678899988887
No 83
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.10 E-value=6.1 Score=37.49 Aligned_cols=70 Identities=16% Similarity=0.367 Sum_probs=51.7
Q ss_pred CeeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec-CceEEEEeeccccCCCCccCHH---HHHHHHHHHHhc
Q 048653 44 GFMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT-DTFSLQAIGGKNEEQGETIDAH---VVKQALLQVIRN 116 (124)
Q Consensus 44 g~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~-~~f~l~a~~~~~~~~~~~~s~~---~ik~aL~~ai~~ 116 (124)
|..|-|.+..+ |+++..+. .++...|++|+.|++-+. ||+.+.++.+... ++..++.+ .+.+.|.+++..
T Consensus 684 ~teV~V~a~d~-p~Lfa~v~-~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~-~g~~~~~dr~~~~~~~l~~~l~s 757 (867)
T COG2844 684 GTEVFVYAPDR-PRLFAVVC-AALSRRGLSIVDAQIFTTRDGYALDTFIVLEP-DGFPVEEDRRAALRGELIEALLS 757 (867)
T ss_pred ceEEEEEcCCC-ccHHHHHH-HHHccCCCceeeeEEEEccCCceeeeEEEecC-CCCccchhHHHHHHHHHHHHHhc
Confidence 36678888999 99999999 999999999999998655 7999999876532 34444422 234455555553
No 84
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=82.92 E-value=7.8 Score=23.12 Aligned_cols=35 Identities=23% Similarity=0.388 Sum_probs=30.4
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
.+.+....+ ||.|.++. ..|.+.|.++...+....
T Consensus 2 ~l~i~~~d~-~g~l~~i~-~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04878 2 TLSVLVENE-PGVLNRIS-GLFARRGFNIESLTVGPT 36 (72)
T ss_pred EEEEEEcCC-CcHHHHHH-HHHHhCCCCEEEEEeeec
Confidence 466778888 99999999 999999999999887754
No 85
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=82.77 E-value=10 Score=24.42 Aligned_cols=34 Identities=24% Similarity=0.372 Sum_probs=28.3
Q ss_pred EEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 47 INLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 47 v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
+.+..+.+ ||.|.+++ +.|.+.|+++.+..+...
T Consensus 4 l~~~~~d~-~G~L~~il-~~f~~~~ini~~i~s~p~ 37 (80)
T cd04905 4 IVFTLPNK-PGALYDVL-GVFAERGINLTKIESRPS 37 (80)
T ss_pred EEEEECCC-CCHHHHHH-HHHHHCCcCEEEEEEEEc
Confidence 44556677 99999999 999999999998876655
No 86
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.90 E-value=6.6 Score=24.73 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=26.9
Q ss_pred EEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 48 NLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 48 ~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
.|.++-+ ||-|.+++ +.+.+ |.+|...+-...
T Consensus 2 ~v~ipdk-PG~l~~~~-~~i~~-~~nI~~~~~~~~ 33 (68)
T cd04885 2 AVTFPER-PGALKKFL-ELLGP-PRNITEFHYRNQ 33 (68)
T ss_pred EEECCCC-CCHHHHHH-HHhCC-CCcEEEEEEEcC
Confidence 5777888 99999999 99999 999987766543
No 87
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=74.39 E-value=18 Score=25.62 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=36.3
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC--ceEEEEeec
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD--TFSLQAIGG 92 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~--~f~l~a~~~ 92 (124)
..+.|..+.. ||.|.+|. ..|..-|.++.+..++..+ +++--++.+
T Consensus 9 ~tisvlv~N~-pGVL~RIa-glFsRRgyNIeSLtvg~te~~~iSRmtivv 56 (96)
T PRK08178 9 VILELTVRNH-PGVMSHVC-GLFARRAFNVEGILCLPIQDGDKSRIWLLV 56 (96)
T ss_pred EEEEEEEECC-cCHHHHHH-HHHhcCCcCeeeEEEeecCCCCceEEEEEE
Confidence 4578899999 99999999 9999999999988877664 444334333
No 88
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=73.47 E-value=26 Score=26.33 Aligned_cols=38 Identities=26% Similarity=0.484 Sum_probs=32.7
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCce
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTF 85 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f 85 (124)
.|.|+.|.+ ||.|.+.. ++|.+-|+++---.+.-...|
T Consensus 5 QISvFlENk-~GRL~~~~-~~L~eagINiRA~tiAdt~dF 42 (142)
T COG4747 5 QISVFLENK-PGRLASVA-NKLKEAGINIRAFTIADTGDF 42 (142)
T ss_pred EEEEEecCC-cchHHHHH-HHHHHcCCceEEEEeccccCc
Confidence 367899999 99999999 999999999987777666555
No 89
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=73.22 E-value=2.7 Score=24.25 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=13.1
Q ss_pred chhHHHHhHhhHhhhh
Q 048653 2 HKKAAALHEKLQLLRS 17 (124)
Q Consensus 2 R~RR~klnerl~~LRs 17 (124)
|+||+.|..+|..||.
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6899999999999986
No 90
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=71.90 E-value=10 Score=24.41 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=28.4
Q ss_pred EEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC
Q 048653 48 NLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD 83 (124)
Q Consensus 48 ~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~ 83 (124)
-+.+..+ ||.|.+++ +.|...|+++.+..+-...
T Consensus 4 ~f~l~~~-pG~L~~vL-~~f~~~~iNlt~IeSRP~~ 37 (74)
T cd04904 4 IFSLKEE-VGALARAL-KLFEEFGVNLTHIESRPSR 37 (74)
T ss_pred EEEeCCC-CcHHHHHH-HHHHHCCCcEEEEECCCCC
Confidence 3455677 99999999 9999999999988776654
No 91
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=69.69 E-value=50 Score=33.49 Aligned_cols=72 Identities=17% Similarity=0.361 Sum_probs=49.9
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEE---eeecC--ceEEEEeeccccCCCCccCHHHHHHHHHHHHhcccc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEAR---VSCTD--TFSLQAIGGKNEEQGETIDAHVVKQALLQVIRNWSE 119 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~---vS~~~--~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~~~~~ 119 (124)
+.+++..... +..|.++| -.|++|||.|...+ +.+.+ .+-++.+..... .+...+...+++.+.+++.+.|.
T Consensus 490 ~~lkiy~~~~-~~~Ls~vl-PilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~-~~~~~~~~~~~~~~~~a~~~v~~ 566 (1528)
T PF05088_consen 490 LRLKIYHPGE-PLPLSDVL-PILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYP-DGDALDLDDIRERFEEAFEAVWN 566 (1528)
T ss_pred EEEEEEcCCC-CcCHHHHH-HHHHhCCCEEEEEecceeecCCCceEEEEEEEEecC-CCccccHHHHHHHHHHHHHHHhc
Confidence 4556665556 78999999 99999999999764 44432 345555544432 24447888899999888887553
No 92
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=69.58 E-value=2 Score=33.21 Aligned_cols=38 Identities=34% Similarity=0.494 Sum_probs=27.4
Q ss_pred CchhHHHHhHhhHhhhhcCC---CCCccccchHHhHHHHHH
Q 048653 1 EHKKAAALHEKLQLLRSITN---SHALSKTSIIVDASNYIE 38 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP---~sk~dKaSIl~daI~Yik 38 (124)
||||=.-||+-|.+||-++| +.|..|.--|--|-.||-
T Consensus 86 erqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryid 126 (173)
T KOG4447|consen 86 ERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYID 126 (173)
T ss_pred HHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCc
Confidence 67888899999999999999 444555444455555543
No 93
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=69.31 E-value=14 Score=25.94 Aligned_cols=67 Identities=16% Similarity=0.315 Sum_probs=50.3
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCc-eEEEEeeccccCCCCccCHHHHHHHHHHHHhc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDT-FSLQAIGGKNEEQGETIDAHVVKQALLQVIRN 116 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~-f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~~ 116 (124)
+.|.|.-..+ ||+...+- .+|-++|+++++.+=+-.++ |+|-....-. ....+...++..|.....+
T Consensus 4 avITV~GkDr-~GIva~is-~vLAe~~vNIldisQtvm~~~ftm~~lV~~~---~~~~d~~~lr~~l~~~~~~ 71 (90)
T COG3830 4 AVITVIGKDR-VGIVAAVS-RVLAEHGVNILDISQTVMDGFFTMIMLVDIS---KEVVDFAALRDELAAEGKK 71 (90)
T ss_pred EEEEEEcCCC-CchhHHHH-HHHHHcCCcEEEHHHHHHhhhceeeeEEcCC---hHhccHHHHHHHHHHHHHh
Confidence 3567888888 99999999 99999999999987777765 5776654221 2356777888877766554
No 94
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=69.12 E-value=38 Score=26.28 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=46.1
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC-------ceEEEEeeccccCCCCccCHHHHHHHHHHHHh
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD-------TFSLQAIGGKNEEQGETIDAHVVKQALLQVIR 115 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~-------~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~ 115 (124)
+.|.|.-..+ ||++..+- ++|-+.|+++.+-+..+.. -|.+.+...- ....+..+++.+|...-.
T Consensus 96 ~~v~v~G~Dr-PGIV~~vT-~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~l----P~~~~~~~L~~~l~~l~~ 167 (190)
T PRK11589 96 VWVQVEVADS-PHLIERFT-ALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHS----PASQDAANIEQAFKALCT 167 (190)
T ss_pred EEEEEEECCC-CCHHHHHH-HHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEc----CCCCCHHHHHHHHHHHHH
Confidence 4567777777 99999999 9999999999877666553 3555543321 234567888888876543
No 95
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.13 E-value=33 Score=22.49 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=26.9
Q ss_pred EEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 49 LFSKKSCPGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 49 V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
+..+.+ ||.|.+++ ..|+..|+++.+..+-..
T Consensus 5 ~~l~~~-~g~L~~iL-~~f~~~~inl~~IeSRP~ 36 (74)
T cd04929 5 FSLKNE-VGGLAKAL-KLFQELGINVVHIESRKS 36 (74)
T ss_pred EEcCCC-CcHHHHHH-HHHHHCCCCEEEEEeccC
Confidence 445677 99999999 999999999998776655
No 96
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=66.84 E-value=4.9 Score=31.13 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=36.8
Q ss_pred CchhHHHHhHhhHhhhhcCCCCCccc------cchHHhHHHHHHHHHHcCeeEEEEeecC
Q 048653 1 EHKKAAALHEKLQLLRSITNSHALSK------TSIIVDASNYIEELKQKGFMINLFSKKS 54 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP~sk~dK------aSIl~daI~YikeL~~~g~~v~V~~e~~ 54 (124)
||.|-..||+.+..|+.+.|.+.-|+ -+|=+|-|.+..|||.+-++-.|.=+.+
T Consensus 30 e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE~q~qrv~anvrerqR 89 (173)
T KOG4447|consen 30 ERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDELQKQRVMANVRERQR 89 (173)
T ss_pred HHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 45666789999999999999433322 2345688999999998843334433344
No 97
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=64.03 E-value=32 Score=21.20 Aligned_cols=21 Identities=24% Similarity=0.664 Sum_probs=19.1
Q ss_pred CchHHHHHHHHHHhcCCeEEEE
Q 048653 56 PGLLVSILGSAFEELALNVLEA 77 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a 77 (124)
||.+.+++ ++|.+.|+++.+.
T Consensus 15 ~gi~~~if-~aL~~~~I~v~~~ 35 (64)
T cd04937 15 PGVMAKIV-GALSKEGIEILQT 35 (64)
T ss_pred cCHHHHHH-HHHHHCCCCEEEE
Confidence 99999999 9999999999743
No 98
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=63.67 E-value=12 Score=28.08 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=29.4
Q ss_pred HHHHHHcCeeEE------EEeecCCCchHHHHHHHHHHhcCCeEE
Q 048653 37 IEELKQKGFMIN------LFSKKSCPGLLVSILGSAFEELALNVL 75 (124)
Q Consensus 37 ikeL~~~g~~v~------V~~e~~c~g~L~~i~~~ale~l~L~V~ 75 (124)
-.-|+++||.|+ |..+.. ||.|.+|+ ++|-.-++++-
T Consensus 56 ~~~Lee~gF~Vr~~dVlaVEmeD~-PG~l~~I~-~vl~d~diNld 98 (142)
T COG4747 56 HSVLEEAGFTVRETDVLAVEMEDV-PGGLSRIA-EVLGDADINLD 98 (142)
T ss_pred HHHHHHCCcEEEeeeEEEEEecCC-CCcHHHHH-HHHhhcCcCce
Confidence 355788898775 356778 99999999 99998877654
No 99
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.09 E-value=43 Score=22.40 Aligned_cols=66 Identities=14% Similarity=0.155 Sum_probs=45.8
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccCHHHHHHHHHHH
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETIDAHVVKQALLQV 113 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~a 113 (124)
.|.|.|+.+ .|+=-++. ..+=+.||.+....+|+-+....-.+-+-.....-.+.-+-+|+.|..+
T Consensus 2 vitvnCPDk-tGLgcdlc-r~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~~~~~rW~lLK~RL~~~ 67 (69)
T cd04894 2 VITINCPDK-TGLGCDLC-RIILEFGLNITRGDDSTDGRWCYIVFWVVPRPPSIKVRWDLLKNRLMSA 67 (69)
T ss_pred EEEEeCCCc-cCcccHHH-HHHHHhceEEEecccccCCcEEEEEEEEecCCCCCcccHHHHHHHHHhc
Confidence 367888888 88888999 9999999999999999777443333222211113345677788877654
No 100
>PLN03217 transcription factor ATBS1; Provisional
Probab=62.91 E-value=12 Score=26.36 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=30.8
Q ss_pred HHHhHhhHhhhhcCC-CCC---ccccc---hHHhHHHHHHHHHHc
Q 048653 6 AALHEKLQLLRSITN-SHA---LSKTS---IIVDASNYIEELKQK 43 (124)
Q Consensus 6 ~klnerl~~LRslvP-~sk---~dKaS---Il~daI~YikeL~~~ 43 (124)
..+|+=...|++++| +.. -+|+| +|-+|-.||+.|.+.
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrE 64 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHRE 64 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHH
Confidence 578999999999999 422 34544 899999999999887
No 101
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=62.76 E-value=28 Score=26.98 Aligned_cols=62 Identities=13% Similarity=0.237 Sum_probs=46.4
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCc-eEEEEeeccccCCCCccCHHHHHHHHHHH
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDT-FSLQAIGGKNEEQGETIDAHVVKQALLQV 113 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~-f~l~a~~~~~~~~~~~~s~~~ik~aL~~a 113 (124)
+.|.|....+ ||++..+- +++.+.|.++.+++.+-.+| |++--.... ...+...+..+|-..
T Consensus 9 lviTviG~Dr-pGIVa~vs-~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~-----~~~~~~~le~~L~~l 71 (190)
T PRK11589 9 LVITALGADR-PGIVNTIT-RHVSSCGCNIEDSRLAMLGEEFTFIMLLSG-----SWNAITLIESTLPLK 71 (190)
T ss_pred EEEEEEcCCC-ChHHHHHH-HHHHHcCCCeeehhhHhhCCceEEEEEEeC-----ChhHHHHHHHHHHhh
Confidence 4578888899 99999999 99999999999999998876 555443322 223666777766544
No 102
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=62.43 E-value=16 Score=22.22 Aligned_cols=37 Identities=19% Similarity=0.300 Sum_probs=28.0
Q ss_pred EEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEE
Q 048653 49 LFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSL 87 (124)
Q Consensus 49 V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l 87 (124)
+..+.+ ||+|.+++ +.|.+.|.++...+.+..++...
T Consensus 4 ~~~~d~-~g~l~~i~-~~l~~~~~nI~~~~~~~~~~~a~ 40 (69)
T cd04901 4 HIHKNV-PGVLGQIN-TILAEHNINIAAQYLQTRGEIGY 40 (69)
T ss_pred EEecCC-CcHHHHHH-HHHHHcCCCHHHHhccCCCCEEE
Confidence 455677 99999999 99999999997765554334433
No 103
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=61.64 E-value=4.8 Score=32.62 Aligned_cols=43 Identities=30% Similarity=0.421 Sum_probs=36.9
Q ss_pred CchhHHHHhHhhHhhhhcCC----CCCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN----SHALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP----~sk~dKaSIl~daI~YikeL~~~ 43 (124)
||+|=-.||+-|..||.++| -.|+.|.=.|-=|=.||-.|.+-
T Consensus 80 ER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 80 ERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred hhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 56555679999999999999 57788888998999999999866
No 104
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=60.57 E-value=64 Score=29.97 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=51.4
Q ss_pred eeEEEEe-ecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccCHHHHHHHHHHHHhc
Q 048653 45 FMINLFS-KKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETIDAHVVKQALLQVIRN 116 (124)
Q Consensus 45 ~~v~V~~-e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~~ 116 (124)
..+.|.- ... +|.|.++. ..+--.|++|.+|++.+ +|..+..+.+.. ..+...++..+.|++..++..
T Consensus 547 ~~~~~~~~~~~-~~~~~~~~-~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~ 615 (693)
T PRK00227 547 GFFTVIWHGDY-PRELVRVL-ALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDFDPQEFLQAYKSGVYS 615 (693)
T ss_pred CeEEEEecCCc-ccHHHHHH-HHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCCChHHHHHHHHHhhcC
Confidence 4566665 777 99999999 99999999999999999 665443333332 246677899999998887754
No 105
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.38 E-value=25 Score=24.05 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=28.2
Q ss_pred EEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 47 INLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 47 v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
+-..++.+ ||.|.+++ ..|...|+++.+..+-..
T Consensus 17 lif~l~~~-pGsL~~vL-~~Fa~~~INLt~IeSRP~ 50 (90)
T cd04931 17 LIFSLKEE-VGALAKVL-RLFEEKDINLTHIESRPS 50 (90)
T ss_pred EEEEcCCC-CcHHHHHH-HHHHHCCCCEEEEEeccC
Confidence 34455778 99999999 999999999998876655
No 106
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=59.24 E-value=75 Score=29.87 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=31.1
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
.|.|.+..+ +|+|.+|. .++.+.+.+|.++++...
T Consensus 668 ~I~I~~~Dr-~GlL~dIt-~~is~~~~nI~~v~~~~~ 702 (743)
T PRK10872 668 VVRVTANDR-SGLLRDIT-TILANEKVNVLGVASRSD 702 (743)
T ss_pred EEEEEEcCC-CCHHHHHH-HHHHHCCCCeEEEEeEEc
Confidence 567788888 99999999 999999999999988754
No 107
>PRK06382 threonine dehydratase; Provisional
Probab=58.25 E-value=70 Score=27.09 Aligned_cols=34 Identities=26% Similarity=0.246 Sum_probs=30.0
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEee
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVS 80 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS 80 (124)
..+.|..+.+ ||.|.++. +.|.+.|.+|.+....
T Consensus 331 ~rl~v~v~D~-pG~L~~l~-~ii~~~~~nI~~v~~~ 364 (406)
T PRK06382 331 VRIECNIPDR-PGNLYRIA-NAIASNGGNIYHAEVD 364 (406)
T ss_pred EEEEEEcCCC-CCHHHHHH-HHHhcCCCcEEEEEEe
Confidence 6778888999 99999999 9999999999887653
No 108
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=56.99 E-value=94 Score=25.80 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=33.8
Q ss_pred HHHHcC--eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEee
Q 048653 39 ELKQKG--FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVS 80 (124)
Q Consensus 39 eL~~~g--~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS 80 (124)
-|-..| +.+.|..+.+ ||.|.+++ +.+.+.|.+|.+....
T Consensus 298 gl~~~gr~~~l~v~l~D~-pG~L~~v~-~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 298 GLVKSGRKVRIETVLPDR-PGALYHLL-ESIAEARANIVKIDHD 339 (380)
T ss_pred HHHhCCCEEEEEEEeCCC-CCHHHHHH-HHHhcCCCcEEEEEee
Confidence 555556 5788899999 99999999 9999999999987554
No 109
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=56.54 E-value=43 Score=20.32 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=27.4
Q ss_pred EEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 48 NLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 48 ~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
-+..+.+ ||.+.++. +.|.+.|+++.+..++..
T Consensus 3 ~v~~~d~-~G~l~~i~-~~l~~~~inI~~~~~~~~ 35 (73)
T cd04902 3 VVRNTDR-PGVIGKVG-TILGEAGINIAGMQVGRD 35 (73)
T ss_pred EEEeCCC-CCHHHHHH-HHHHHcCcChhheEeecc
Confidence 3456778 99999999 999999999988776553
No 110
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=56.47 E-value=95 Score=28.62 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=32.7
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC-ce
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD-TF 85 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~-~f 85 (124)
.|+|.+..+ +|+|.+|. .++.+.+.++.+++++..+ ++
T Consensus 612 ~I~I~~~dr-~GlLadI~-~~ia~~~~nI~~v~~~~~~~~~ 650 (683)
T TIGR00691 612 DINIEAVDR-KGVLSDLT-TAISENDSNIVSISTKTYGKRE 650 (683)
T ss_pred EEEEEEecC-CCHHHHHH-HHHHHCCCCeEEEEeEEcCCCE
Confidence 567788888 99999999 9999999999999987763 44
No 111
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=55.20 E-value=1e+02 Score=28.67 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=32.1
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD 83 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~ 83 (124)
.|+|.+..+ +|+|.+|. .++.+.+.++.++++...+
T Consensus 628 ~i~I~~~dr-~GlL~dI~-~~i~~~~~nI~~v~~~~~~ 663 (702)
T PRK11092 628 EIKVEMFNH-QGALANLT-AAINTTGSNIQSLNTEEKD 663 (702)
T ss_pred EEEEEEeCC-CCHHHHHH-HHHHHCCCCeEEEEEEEcC
Confidence 567788888 99999999 9999999999999987664
No 112
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=53.28 E-value=64 Score=24.91 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=45.0
Q ss_pred EEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC--ceEEEEeeccccCCCCccCHHHHHHHHHHHHhc
Q 048653 47 INLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD--TFSLQAIGGKNEEQGETIDAHVVKQALLQVIRN 116 (124)
Q Consensus 47 v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~--~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~~ 116 (124)
+.++.++. ||.|-++. ..|...|+++-+..+...+ +.+--.+.+. ++.-..++|...|++.+.-
T Consensus 7 lsvlv~ne-~GvLsRv~-glfsrRG~NIeSltv~~tE~~~~SRiTivv~----g~~~~~EQi~kQL~kLidV 72 (163)
T COG0440 7 LSLLVENE-PGVLSRVT-GLFSRRGYNIESLTVGPTETPGLSRITIVVS----GDEQVLEQIIKQLNKLIDV 72 (163)
T ss_pred EEEEEECC-CCeeehhh-HHHHhcCcccceEEEEecCCCCceEEEEEEc----CCcchHHHHHHHHHhhccc
Confidence 46778899 99999999 9999999999988888775 3322222222 2223467777777777653
No 113
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=51.60 E-value=50 Score=22.51 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=31.2
Q ss_pred hHHhHHHHHHHHHHcCeeEEEEeecCCCchHHHHHHHHHHhcCCeEE
Q 048653 29 IIVDASNYIEELKQKGFMINLFSKKSCPGLLVSILGSAFEELALNVL 75 (124)
Q Consensus 29 Il~daI~YikeL~~~g~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~ 75 (124)
.+-+|.+.|+.|+++|..+-+..... .---..+. +-|+.+|+++-
T Consensus 15 ~ipga~e~l~~L~~~g~~~~~lTNns-~~s~~~~~-~~L~~~Gi~~~ 59 (101)
T PF13344_consen 15 PIPGAVEALDALRERGKPVVFLTNNS-SRSREEYA-KKLKKLGIPVD 59 (101)
T ss_dssp E-TTHHHHHHHHHHTTSEEEEEES-S-SS-HHHHH-HHHHHTTTT--
T ss_pred cCcCHHHHHHHHHHcCCCEEEEeCCC-CCCHHHHH-HHHHhcCcCCC
Confidence 46689999999999997777766554 33345666 88899999863
No 114
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=49.60 E-value=63 Score=20.22 Aligned_cols=26 Identities=31% Similarity=0.451 Sum_probs=21.9
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 56 PGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
||.+.+++ ++|.+.|+++.....++.
T Consensus 15 ~gv~~ki~-~~L~~~~I~v~~i~~~~s 40 (66)
T cd04915 15 PGVLARGL-AALAEAGIEPIAAHQSMR 40 (66)
T ss_pred chHHHHHH-HHHHHCCCCEEEEEecCC
Confidence 88999999 999999999977665543
No 115
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.07 E-value=57 Score=19.56 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=19.8
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEe
Q 048653 56 PGLLVSILGSAFEELALNVLEARV 79 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~v 79 (124)
||.+.+++ ++|.+.|+++.-..-
T Consensus 15 ~~~~~~if-~~L~~~~I~v~~i~q 37 (66)
T cd04919 15 IGIAGRMF-TTLADHRINIEMISQ 37 (66)
T ss_pred cCHHHHHH-HHHHHCCCCEEEEEe
Confidence 88999999 999999999965543
No 116
>PRK08198 threonine dehydratase; Provisional
Probab=48.91 E-value=1.1e+02 Score=25.75 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=30.7
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEee
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVS 80 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS 80 (124)
+.+.|..+.+ ||.|.+++ +.+.+.|.+|.+.+..
T Consensus 328 ~~l~v~l~D~-PG~L~~ll-~~i~~~g~NI~~i~~~ 361 (404)
T PRK08198 328 LKLRVRLPDR-PGQLAKLL-SIIAELGANVIDVDHD 361 (404)
T ss_pred EEEEEEeCCC-CCHHHHHH-HHHhhCCCceEEEEEE
Confidence 5788999999 99999999 9999999999887765
No 117
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.86 E-value=41 Score=24.01 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=28.8
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
.+-+.++.. ||.|.++| +.|...|+++.+..+-+.
T Consensus 43 Slifsl~~~-pGsL~~iL-~~Fa~~gINLt~IESRP~ 77 (115)
T cd04930 43 TLLFSLKEG-FSSLSRIL-KVFETFEAKIHHLESRPS 77 (115)
T ss_pred EEEEEeCCC-CcHHHHHH-HHHHHCCCCEEEEECCcC
Confidence 344556778 99999999 999999999998876665
No 118
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=48.09 E-value=58 Score=19.34 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.0
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEe
Q 048653 56 PGLLVSILGSAFEELALNVLEARV 79 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~v 79 (124)
||.+.+++ ++|.+.|++|.-..-
T Consensus 15 ~~~~~~i~-~~l~~~~I~v~~i~~ 37 (66)
T cd04922 15 PGVAATFF-SALAKANVNIRAIAQ 37 (66)
T ss_pred ccHHHHHH-HHHHHCCCCEEEEEe
Confidence 88999999 999999999976543
No 119
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=47.96 E-value=31 Score=26.78 Aligned_cols=36 Identities=19% Similarity=0.352 Sum_probs=29.8
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
+.+.|..+.+ ||.|++++ +-+.+.|-++...-.+--
T Consensus 6 itldIEL~D~-PGQLl~vL-qPls~~g~NiItIiH~r~ 41 (170)
T COG2061 6 ITLDIELKDK-PGQLLKVL-QPLSKTGANIITIIHSRD 41 (170)
T ss_pred EEEEEEecCC-Ccchhhhh-cchhhcCccEEEEEeecC
Confidence 3456778888 99999999 999999999988766633
No 120
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.16 E-value=81 Score=20.46 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=33.4
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccCHHHHHHHHHHHHhcc
Q 048653 56 PGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETIDAHVVKQALLQVIRNW 117 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~~~ 117 (124)
||.+.+++ ++|.+.|++|-....|- +++++-.... +... -+.++.+|.+-+.++
T Consensus 15 ~g~~~~IF-~~La~~~I~VDmI~~s~-~~iSftv~~~-----d~~~-~~~~~~~l~~~l~~~ 68 (75)
T cd04932 15 QGFLAKVF-GILAKHNISVDLITTSE-ISVALTLDNT-----GSTS-DQLLTQALLKELSQI 68 (75)
T ss_pred cCHHHHHH-HHHHHcCCcEEEEeecC-CEEEEEEecc-----ccch-hHHHHHHHHHHHHhc
Confidence 89999999 99999999998775432 4444333111 1111 144555666666553
No 121
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=44.84 E-value=46 Score=19.96 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=23.4
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEeeecCceEEE
Q 048653 56 PGLLVSILGSAFEELALNVLEARVSCTDTFSLQ 88 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~ 88 (124)
+|...+++ ++|++.|++|.....+. +++++-
T Consensus 14 ~~~~~~if-~~l~~~~i~v~~i~t~~-~~is~~ 44 (62)
T cd04890 14 VGFLRKIF-EILEKHGISVDLIPTSE-NSVTLY 44 (62)
T ss_pred cCHHHHHH-HHHHHcCCeEEEEecCC-CEEEEE
Confidence 78889999 99999999998875432 444333
No 122
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=43.47 E-value=95 Score=20.48 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=23.3
Q ss_pred eEEEEeecCCCchH----HHHHHHHHHhcCCe-EEEEEeee
Q 048653 46 MINLFSKKSCPGLL----VSILGSAFEELALN-VLEARVSC 81 (124)
Q Consensus 46 ~v~V~~e~~c~g~L----~~i~~~ale~l~L~-V~~a~vS~ 81 (124)
.++|.+.-+ ||++ -.+. .++..||++ |.+++++-
T Consensus 2 ~~~V~V~~k-~gv~Dp~G~ai~-~~l~~lg~~~v~~Vr~~k 40 (80)
T PRK05974 2 KVKVTVTLK-EGVLDPQGQAIK-GALGSLGYDGVEDVRQGK 40 (80)
T ss_pred EEEEEEEEC-CCCcChHHHHHH-HHHHHcCCCCcceEEEEE
Confidence 456666666 7644 3466 889999998 77766553
No 123
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.80 E-value=80 Score=19.47 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=21.2
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 56 PGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
+|.+.+++ ++|.+.|++|.-..-++.
T Consensus 14 ~~~~~~i~-~aL~~~~I~v~~i~~g~s 39 (65)
T cd04918 14 SLILERAF-HVLYTKGVNVQMISQGAS 39 (65)
T ss_pred ccHHHHHH-HHHHHCCCCEEEEEecCc
Confidence 88999999 999999999976554433
No 124
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=40.43 E-value=1.1e+02 Score=20.58 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=28.5
Q ss_pred eeEEEEeecCCCchH----HHHHHHHHHhcCCe-EEEEEeeecCceEEEE
Q 048653 45 FMINLFSKKSCPGLL----VSILGSAFEELALN-VLEARVSCTDTFSLQA 89 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L----~~i~~~ale~l~L~-V~~a~vS~~~~f~l~a 89 (124)
|.++|.+.-+ ||+| -.|. .+|..||++ |.++++.-.-.|.+++
T Consensus 1 ~~~~V~V~~K-~gvlDPqG~ai~-~al~~lG~~~v~~Vr~GK~~~l~~~~ 48 (80)
T PF02700_consen 1 MKVRVEVTLK-PGVLDPQGEAIK-RALHRLGYDGVKDVRVGKYIELELEA 48 (80)
T ss_dssp EEEEEEEEE--TTS--HHHHHHH-HHHHHTT-TTEEEEEEEEEEEEEEE-
T ss_pred CEEEEEEEEC-CCCcCcHHHHHH-HHHHHcCCcccCcEEEEEEEEEEEeC
Confidence 3456666666 6644 3566 999999999 8899887666666665
No 125
>COG3474 Cytochrome c2 [Energy production and conversion]
Probab=37.39 E-value=40 Score=25.36 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=29.5
Q ss_pred HHHhHhhHhhhhcCCCCCc-----cccchHHhHHHHHHHHH
Q 048653 6 AALHEKLQLLRSITNSHAL-----SKTSIIVDASNYIEELK 41 (124)
Q Consensus 6 ~klnerl~~LRslvP~sk~-----dKaSIl~daI~YikeL~ 41 (124)
+.|++-|..=+..||-+|| .|.--+.|-|.|++.+-
T Consensus 91 ~~L~~fL~~Pkk~vpGTkM~faGlkk~~dradlIAYLk~~~ 131 (135)
T COG3474 91 DNLDEFLTAPKKYVPGTKMAFAGLKKDQDRADLIAYLKSLP 131 (135)
T ss_pred HHHHHHHhChhhhCCCcceeecCCCCHHHHHHHHHHHHhcc
Confidence 4688888888999998888 56667889999998753
No 126
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=36.70 E-value=35 Score=28.42 Aligned_cols=43 Identities=26% Similarity=0.312 Sum_probs=32.7
Q ss_pred CchhHHHHhHhhHhhhhcCC-C---CCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN-S---HALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP-~---sk~dKaSIl~daI~YikeL~~~ 43 (124)
||+|=..||.-|..||-+|| . ++..|=--|--|-.||--|-..
T Consensus 182 Errrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~ 228 (285)
T KOG4395|consen 182 ERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCL 228 (285)
T ss_pred HHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHh
Confidence 45555689999999999999 3 5556666677788888777655
No 127
>PRK10444 UMP phosphatase; Provisional
Probab=36.32 E-value=73 Score=25.19 Aligned_cols=50 Identities=12% Similarity=0.260 Sum_probs=37.5
Q ss_pred chHHhHHHHHHHHHHcCeeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEe
Q 048653 28 SIIVDASNYIEELKQKGFMINLFSKKSCPGLLVSILGSAFEELALNVLEARV 79 (124)
Q Consensus 28 SIl~daI~YikeL~~~g~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~v 79 (124)
.++-.|++.|+.|+++|..+-+..... .-....+. +-|..+|+++..-++
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~-~~~~~~~~-~~l~~~G~~~~~~~i 66 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYP-SQTGQDLA-NRFATAGVDVPDSVF 66 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCC-CCCHHHHH-HHHHHcCCCCCHhhE
Confidence 457789999999999998877766555 44456677 888999997654443
No 128
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=34.55 E-value=1.5e+02 Score=20.34 Aligned_cols=42 Identities=29% Similarity=0.444 Sum_probs=29.5
Q ss_pred eEEEEeecCCCchH----HHHHHHHHHhcCCe-EEEEEeeecCceEEEE
Q 048653 46 MINLFSKKSCPGLL----VSILGSAFEELALN-VLEARVSCTDTFSLQA 89 (124)
Q Consensus 46 ~v~V~~e~~c~g~L----~~i~~~ale~l~L~-V~~a~vS~~~~f~l~a 89 (124)
.++|.+.-+ ||+| ..|- .||..||.+ |.++++.-.-.|.+++
T Consensus 3 ~v~V~V~lK-~~VlDPqG~ti~-~aL~~lg~~~V~~vR~gK~~el~ld~ 49 (83)
T COG1828 3 KVRVYVTLK-PGVLDPEGETIE-KALHRLGYNEVSDVRVGKVIELELDA 49 (83)
T ss_pred EEEEEEEeC-CcccCchhHHHH-HHHHHcCCcccceeeeeeEEEEEecC
Confidence 455666666 6644 3455 999999987 9999987665666665
No 129
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=34.10 E-value=93 Score=17.69 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=21.1
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEeee
Q 048653 56 PGLLVSILGSAFEELALNVLEARVSC 81 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~vS~ 81 (124)
+|.+.+++ ++|.+.++++.....+.
T Consensus 14 ~~~~~~i~-~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 14 PGVAARIF-SALAEAGINIIMISQGS 38 (65)
T ss_pred ccHHHHHH-HHHHHCCCcEEEEEcCC
Confidence 78899999 99999999998776543
No 130
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=34.05 E-value=58 Score=25.64 Aligned_cols=49 Identities=10% Similarity=0.272 Sum_probs=34.7
Q ss_pred hHHhHHHHHHHHHHcCeeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEe
Q 048653 29 IIVDASNYIEELKQKGFMINLFSKKSCPGLLVSILGSAFEELALNVLEARV 79 (124)
Q Consensus 29 Il~daI~YikeL~~~g~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~v 79 (124)
++-.|.+.|++|+++|..+-+...+. ..-.-.+. +-|+.+|+++..-++
T Consensus 22 ~~~~a~~al~~l~~~G~~~~~~Tn~~-~~~~~~~~-~~l~~~g~~~~~~~i 70 (257)
T TIGR01458 22 AVPGSQEAVKRLRGASVKVRFVTNTT-KESKQDLL-ERLQRLGFDISEDEV 70 (257)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEECCC-CCCHHHHH-HHHHHcCCCCCHHHe
Confidence 56789999999999998887766555 22333455 677888888654333
No 131
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.12 E-value=1.2e+02 Score=18.67 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=19.3
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEee
Q 048653 56 PGLLVSILGSAFEELALNVLEARVS 80 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~vS 80 (124)
||.+.+++ ++|.+.++.+.....|
T Consensus 14 ~gv~~~~~-~~L~~~~i~~i~~~~s 37 (63)
T cd04920 14 LHKLGPAL-EVFGKKPVHLVSQAAN 37 (63)
T ss_pred ccHHHHHH-HHHhcCCceEEEEeCC
Confidence 89999999 9999988877554433
No 132
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.60 E-value=1.4e+02 Score=19.41 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=21.6
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEE
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEA 77 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a 77 (124)
.+.|.++.+ ||-|.+++ ++|- +-+|.+.
T Consensus 3 vl~v~ipD~-PG~L~~ll-~~l~--~anI~~~ 30 (85)
T cd04906 3 LLAVTIPER-PGSFKKFC-ELIG--PRNITEF 30 (85)
T ss_pred EEEEecCCC-CcHHHHHH-HHhC--CCceeEE
Confidence 467888999 99999999 8888 5555443
No 133
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=32.52 E-value=87 Score=19.88 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.5
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEe
Q 048653 56 PGLLVSILGSAFEELALNVLEARV 79 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~v 79 (124)
+|.+.+++ ++|.+.|+++.....
T Consensus 15 ~g~~~~if-~~L~~~~I~v~~i~~ 37 (75)
T cd04912 15 HGFLAKVF-EIFAKHGLSVDLIST 37 (75)
T ss_pred ccHHHHHH-HHHHHcCCeEEEEEc
Confidence 88999999 999999999987753
No 134
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.48 E-value=68 Score=27.60 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=25.7
Q ss_pred HHHHHHHcCeeEEEEeecCCCchHHHHHHHHHHhcCCeEE
Q 048653 36 YIEELKQKGFMINLFSKKSCPGLLVSILGSAFEELALNVL 75 (124)
Q Consensus 36 YikeL~~~g~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~ 75 (124)
-|.+|+++|+.|-|+|... |.+.++| +.+|++..
T Consensus 19 lI~elekkG~ev~iT~rd~--~~v~~LL----d~ygf~~~ 52 (346)
T COG1817 19 LIWELEKKGHEVLITCRDF--GVVTELL----DLYGFPYK 52 (346)
T ss_pred HHHHHHhCCeEEEEEEeec--CcHHHHH----HHhCCCeE
Confidence 4678999999999999888 4555444 67787643
No 135
>PRK11899 prephenate dehydratase; Provisional
Probab=32.44 E-value=2.8e+02 Score=22.70 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=25.8
Q ss_pred EeecCCCchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 50 FSKKSCPGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 50 ~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
..+.+ ||.|.++| +.|...|++...-.+-..
T Consensus 200 ~~~~~-pGaL~~vL-~~Fa~~gINLtkIeSRP~ 230 (279)
T PRK11899 200 RVRNI-PAALYKAL-GGFATNGVNMTKLESYMV 230 (279)
T ss_pred EeCCC-CChHHHHH-HHHHHcCCCeeeEEeeec
Confidence 34567 99999999 999999999987766655
No 136
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.28 E-value=1.1e+02 Score=18.03 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=19.6
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEe
Q 048653 56 PGLLVSILGSAFEELALNVLEARV 79 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~v 79 (124)
||.+.+++ ++|.+.|+++.-...
T Consensus 15 ~~~~~~i~-~~L~~~~i~v~~i~~ 37 (66)
T cd04916 15 VGVSARAT-AALAKAGINIRMINQ 37 (66)
T ss_pred ccHHHHHH-HHHHHCCCCEEEEEe
Confidence 88999999 999999999965543
No 137
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=30.87 E-value=1.6e+02 Score=27.35 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=42.5
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccCHHHHHHHHHHHH
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETIDAHVVKQALLQVI 114 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai 114 (124)
.++|....+ +|+|..++ .+|+ ++.-+++++.+.-.+..+.... + .+-..+..+|..++
T Consensus 633 ~~e~r~~dr-~g~l~~~~-~~l~----~~~~~~~~~~g~~~~~~~~~~~---~--~~r~~~~~~~~~~~ 690 (693)
T PRK00227 633 ILEVRTEDR-RGALGALL-GVLP----DLLWITASTPGATMIVQAALKP---G--FDRATVERDVTRVL 690 (693)
T ss_pred EEEEEeCcc-ccHHHHHH-HHhh----hhhhHhhcCCCcceEEEEEecC---c--ccHHHHHHHHHHHH
Confidence 457777788 99999999 9999 8888999999877777666542 1 23445666666654
No 138
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.53 E-value=1e+02 Score=19.89 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=20.7
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEe
Q 048653 56 PGLLVSILGSAFEELALNVLEARV 79 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~v 79 (124)
||.+.+++ ++|++.|++|-....
T Consensus 15 ~g~~~~IF-~~La~~~I~vDmI~~ 37 (75)
T cd04935 15 VGFLADVF-APFKKHGVSVDLVST 37 (75)
T ss_pred cCHHHHHH-HHHHHcCCcEEEEEe
Confidence 88999999 999999999988754
No 139
>PRK06349 homoserine dehydrogenase; Provisional
Probab=29.75 E-value=3.6e+02 Score=23.09 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=29.1
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEee
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVS 80 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS 80 (124)
+.+++..+.. ||.|.+|- ..|.+.|+++.+....
T Consensus 349 yylRl~v~d~-pGvLa~I~-~~f~~~~vsI~si~q~ 382 (426)
T PRK06349 349 YYLRLLVADK-PGVLAKIA-AIFAENGISIESILQK 382 (426)
T ss_pred EEEEEEecCC-cchHHHHH-HHHhhcCccEEEEEec
Confidence 6788988999 99999999 9999999988766443
No 140
>PF07194 P2: P2 response regulator binding domain; InterPro: IPR010808 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. The response regulators for CheA bind to the P2 domain, which is found between IPR008207 from INTERPRO and IPR004105 from INTERPRO as either one or two copies. Highly flexible linkers connect P2 to the rest of CheA and impart remarkable mobility to the P2 domain. This feature is thought to enhance the inter CheA dimer phosphotransfer reactions within the signalling complex, thereby amplifying the phosphorylation signal [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0006928 cellular component movement; PDB: 1U0S_A.
Probab=29.58 E-value=1.7e+02 Score=19.23 Aligned_cols=32 Identities=25% Similarity=0.443 Sum_probs=19.7
Q ss_pred eeEEEEeecCC--Cc-hHHHHHHHHHHhcCCeEEEEE
Q 048653 45 FMINLFSKKSC--PG-LLVSILGSAFEELALNVLEAR 78 (124)
Q Consensus 45 ~~v~V~~e~~c--~g-~L~~i~~~ale~l~L~V~~a~ 78 (124)
+.|+|..+..| ++ ...-++ ++|+++| ++..+.
T Consensus 3 y~i~v~~~~~c~Mk~vRa~~vl-~~L~~~g-~vi~t~ 37 (84)
T PF07194_consen 3 YHIKVEFDEDCPMKNVRAFMVL-QALEELG-EVIKTI 37 (84)
T ss_dssp EEEEEE--TT-SSHHHHHHHHH-HHHHHTT-EEEEEE
T ss_pred EEEEEEECCCCCchhccHHHHH-HHHHhhC-eEEEEc
Confidence 56788888888 33 344466 8999999 665554
No 141
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.78 E-value=1.2e+02 Score=17.46 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=20.6
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEee
Q 048653 56 PGLLVSILGSAFEELALNVLEARVS 80 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~vS 80 (124)
+|.+.+++ ++|.+.|+++.-...|
T Consensus 14 ~~~~~~i~-~~L~~~~i~v~~i~~s 37 (63)
T cd04923 14 PGVAAKMF-KALAEAGINIEMISTS 37 (63)
T ss_pred ccHHHHHH-HHHHHCCCCEEEEEcc
Confidence 88999999 9999999999776543
No 142
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=28.69 E-value=1.5e+02 Score=18.41 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=20.3
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEee
Q 048653 56 PGLLVSILGSAFEELALNVLEARVS 80 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~vS 80 (124)
+|.+.+++ ++|.+.++++.-..-+
T Consensus 15 ~~~~~~i~-~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 15 PGIAARIF-SALARAGINVILISQA 38 (80)
T ss_pred ccHHHHHH-HHHHHCCCcEEEEEec
Confidence 78999999 9999999999765544
No 143
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=28.61 E-value=1.8e+02 Score=19.16 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=22.3
Q ss_pred EEEEeecCCCchH----HHHHHHHHHhcCCe-EEEEEeee
Q 048653 47 INLFSKKSCPGLL----VSILGSAFEELALN-VLEARVSC 81 (124)
Q Consensus 47 v~V~~e~~c~g~L----~~i~~~ale~l~L~-V~~a~vS~ 81 (124)
++|.+.-+ ||.+ -.+. .++..||++ |.+++++-
T Consensus 3 ~~I~V~~k-~gV~Dp~G~ti~-~~l~~lg~~~v~~Vr~~k 40 (80)
T TIGR00302 3 VEVYIRLK-KGVLDPEGAAIQ-RALALLGYNEVKDVRTGK 40 (80)
T ss_pred EEEEEEEC-CCCcChHHHHHH-HHHHHcCCCCcceEEEEE
Confidence 45555566 6643 3466 889999998 77766553
No 144
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=28.49 E-value=1.8e+02 Score=19.28 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=25.9
Q ss_pred cCeeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEE
Q 048653 43 KGFMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSL 87 (124)
Q Consensus 43 ~g~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l 87 (124)
+++.|-|-|-.+ .| ..++.+.|+.||.++...+-.+...|.-
T Consensus 20 ~~~kivvD~~~G-~~--~~~~~~ll~~lg~~~~~~n~~~d~~f~~ 61 (104)
T PF02879_consen 20 SGLKIVVDCMNG-AG--SDILPRLLERLGCDVIELNCDPDPDFPN 61 (104)
T ss_dssp TTCEEEEE-TTS-TT--HHHHHHHHHHTTCEEEEESSS-STTGTT
T ss_pred CCCEEEEECCCC-HH--HHHHHHHHHHcCCcEEEEeccccccccc
Confidence 357666666555 23 2333356799999988877777666644
No 145
>KOG3348 consensus BolA (bacterial stress-induced morphogen)-related protein [Signal transduction mechanisms]
Probab=28.42 E-value=76 Score=22.08 Aligned_cols=56 Identities=21% Similarity=0.388 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCcc--CHHHHHHHHHHHHhc
Q 048653 59 LVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETI--DAHVVKQALLQVIRN 116 (124)
Q Consensus 59 L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~--s~~~ik~aL~~ai~~ 116 (124)
|-..++++|+--++.|++.+=-|...|.+......++ |+.. .-..|..+|..-|+.
T Consensus 8 l~~~L~~~l~p~~v~V~D~SgGCG~~F~v~IvS~~Fe--GKs~L~rHRlVN~~L~Eeik~ 65 (85)
T KOG3348|consen 8 LEELLTEALEPEHVEVQDVSGGCGSMFDVVIVSAAFE--GKSLLARHRLVNSILAEEIKE 65 (85)
T ss_pred HHHHHHhhcCceEEEEEEcCCCccceEEEEEEccccC--ChHHHHHHHHHHHHHHHHHHH
Confidence 4455568888788888888777877887777666664 4432 344466666555554
No 146
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=27.84 E-value=47 Score=20.43 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=16.1
Q ss_pred ecCCCchHHHHHHHHHHhcC
Q 048653 52 KKSCPGLLVSILGSAFEELA 71 (124)
Q Consensus 52 e~~c~g~L~~i~~~ale~l~ 71 (124)
...||+.++.+. .+|+++.
T Consensus 6 g~~CP~Pl~~~~-~~l~~l~ 24 (69)
T cd00291 6 GLPCPLPVLKTK-KALEKLK 24 (69)
T ss_pred CCcCCHHHHHHH-HHHhcCC
Confidence 345899999999 9999975
No 147
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=27.51 E-value=1.8e+02 Score=18.78 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=21.0
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEee
Q 048653 56 PGLLVSILGSAFEELALNVLEARVS 80 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~vS 80 (124)
||.+.+++ ++|++.|++|-....+
T Consensus 15 ~g~~~~If-~~la~~~I~vd~I~~s 38 (73)
T cd04934 15 HGFLARIF-AILDKYRLSVDLISTS 38 (73)
T ss_pred cCHHHHHH-HHHHHcCCcEEEEEeC
Confidence 88999999 9999999999887543
No 148
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=27.38 E-value=1.3e+02 Score=17.33 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=20.7
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEee
Q 048653 56 PGLLVSILGSAFEELALNVLEARVS 80 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~vS 80 (124)
+|.+.+++ ++|.+.|+++.-...|
T Consensus 14 ~~~~~~i~-~~L~~~~i~v~~i~~s 37 (63)
T cd04936 14 PGVAAKMF-EALAEAGINIEMISTS 37 (63)
T ss_pred ccHHHHHH-HHHHHCCCcEEEEEcc
Confidence 78999999 9999999999776643
No 149
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.33 E-value=1.4e+02 Score=17.54 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=19.4
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEe
Q 048653 56 PGLLVSILGSAFEELALNVLEARV 79 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~v 79 (124)
+|.+.+++ ++|.+.|+++.-..-
T Consensus 15 ~~~~~~i~-~~L~~~~I~v~~i~q 37 (66)
T cd04924 15 PGVAGRVF-GALGKAGINVIMISQ 37 (66)
T ss_pred ccHHHHHH-HHHHHCCCCEEEEEe
Confidence 78899999 999999999965543
No 150
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=26.82 E-value=4.1e+02 Score=25.00 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=31.6
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT 82 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~ 82 (124)
+.|+|....+ +|+|-+|+ +++.+.+.+|..++..+.
T Consensus 628 ~~i~v~~~~r-~glL~~i~-~~i~~~~~ni~~v~~~~~ 663 (701)
T COG0317 628 VDIEIRAYDR-SGLLRDVS-QVLANEKINVLGVNTRSD 663 (701)
T ss_pred EEEEEEEccc-cchHHHHH-HHHHhCCCceEEeecccc
Confidence 3557777888 99999999 999999999999988875
No 151
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=26.70 E-value=2e+02 Score=25.75 Aligned_cols=98 Identities=14% Similarity=0.091 Sum_probs=61.5
Q ss_pred HHhHhhHhhhhcCC-CCCc---------------cccchHHhHHHHHHH----------HHHc--------CeeEEEEee
Q 048653 7 ALHEKLQLLRSITN-SHAL---------------SKTSIIVDASNYIEE----------LKQK--------GFMINLFSK 52 (124)
Q Consensus 7 klnerl~~LRslvP-~sk~---------------dKaSIl~daI~Yike----------L~~~--------g~~v~V~~e 52 (124)
+...|+..|+.+=+ ..|. .+..+|..+.+|+.. |++. +-.|.+++|
T Consensus 119 q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiE 198 (522)
T TIGR01211 119 QVTARLEQLEQIGHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIE 198 (522)
T ss_pred HHHHHHHHHHHhCCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEE
Confidence 34566777777533 3332 445667777777644 3333 134667777
Q ss_pred cCCCc-hHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccCHHHHHHHHHHH
Q 048653 53 KSCPG-LLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETIDAHVVKQALLQV 113 (124)
Q Consensus 53 ~~c~g-~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~a 113 (124)
-+ |+ +--..+ +.|.++|++-++.-+=+++.-+++++... -+.+++.+++..+
T Consensus 199 tR-PD~i~~e~L-~~L~~~G~~rVslGVQS~~d~VL~~inRg-------ht~~~v~~Ai~~l 251 (522)
T TIGR01211 199 TR-PDYCREEHI-DRMLKLGATRVELGVQTIYNDILERTKRG-------HTVRDVVEATRLL 251 (522)
T ss_pred Ec-CCcCCHHHH-HHHHHcCCCEEEEECccCCHHHHHHhCCC-------CCHHHHHHHHHHH
Confidence 77 66 445677 89999999888877777776666654433 3666777766543
No 152
>PRK11898 prephenate dehydratase; Provisional
Probab=26.33 E-value=2.3e+02 Score=23.03 Aligned_cols=29 Identities=28% Similarity=0.311 Sum_probs=25.0
Q ss_pred cCCCchHHHHHHHHHHhcCCeEEEEEeeecC
Q 048653 53 KSCPGLLVSILGSAFEELALNVLEARVSCTD 83 (124)
Q Consensus 53 ~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~ 83 (124)
.+ ||.|.++| +.|...|++..+..+-...
T Consensus 206 ~~-pGsL~~~L-~~F~~~~INLt~IeSRP~~ 234 (283)
T PRK11898 206 NL-PGALYKAL-SEFAWRGINLTRIESRPTK 234 (283)
T ss_pred CC-ccHHHHHH-HHHHHCCCCeeeEecccCC
Confidence 35 99999999 9999999999988776653
No 153
>PLN02645 phosphoglycolate phosphatase
Probab=26.03 E-value=1.4e+02 Score=24.26 Aligned_cols=49 Identities=22% Similarity=0.310 Sum_probs=36.7
Q ss_pred hHHhHHHHHHHHHHcCeeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEe
Q 048653 29 IIVDASNYIEELKQKGFMINLFSKKSCPGLLVSILGSAFEELALNVLEARV 79 (124)
Q Consensus 29 Il~daI~YikeL~~~g~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~v 79 (124)
++..|.+-|++|+++|..+-+...+. .-..-.++ +-|+.+|+++..-.+
T Consensus 45 ~~~ga~e~l~~lr~~g~~~~~~TN~~-~~~~~~~~-~~l~~lGi~~~~~~I 93 (311)
T PLN02645 45 LIEGVPETLDMLRSMGKKLVFVTNNS-TKSRAQYG-KKFESLGLNVTEEEI 93 (311)
T ss_pred cCcCHHHHHHHHHHCCCEEEEEeCCC-CCCHHHHH-HHHHHCCCCCChhhE
Confidence 56789999999999998877766555 44566677 888999987654333
No 154
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=25.72 E-value=53 Score=20.49 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=15.8
Q ss_pred ecCCCchHHHHHHHHHHhcC
Q 048653 52 KKSCPGLLVSILGSAFEELA 71 (124)
Q Consensus 52 e~~c~g~L~~i~~~ale~l~ 71 (124)
...||..++.+. .+|+++.
T Consensus 7 g~~CP~Pll~~~-~~l~~l~ 25 (70)
T PF01206_consen 7 GLSCPMPLLKAK-KALKELP 25 (70)
T ss_dssp S-STTHHHHHHH-HHHHTSG
T ss_pred CCCCCHHHHHHH-HHHHhcC
Confidence 346899999999 9999984
No 155
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=25.02 E-value=1.1e+02 Score=23.29 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=28.8
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEee
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVS 80 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS 80 (124)
+.+.+..+.+ -|.|.+++ +++-..+++|+..+=+
T Consensus 73 ~TL~l~ledr-~G~LS~vL-d~iA~~~~nvLTI~Q~ 106 (150)
T COG4492 73 ITLSLSLEDR-VGILSDVL-DVIAREEINVLTIHQT 106 (150)
T ss_pred EEEEEEEhhh-hhhHHHHH-HHHHHhCCcEEEEecc
Confidence 4567788999 99999999 9999999999876543
No 156
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=24.96 E-value=2.4e+02 Score=24.25 Aligned_cols=57 Identities=16% Similarity=0.287 Sum_probs=37.0
Q ss_pred HHhHHHHHHHHHHc-C---eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEE
Q 048653 30 IVDASNYIEELKQK-G---FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQ 88 (124)
Q Consensus 30 l~daI~YikeL~~~-g---~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~ 88 (124)
+..-++++..++++ + +.+.|..... ++-...+. +.+++.|.+.+..|+||.++-...
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~s-~~~~~~~a-~~~e~~GaD~iELNiSCPn~~~~r 157 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEYN-KDAWEEII-ERVEETGVDALEINFSCPHGMPER 157 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCCC-HHHHHHHH-HHHHhcCCCEEEEECCCCCCCCcC
Confidence 33345566666544 1 1223221223 77788888 889999999999999999964333
No 157
>PRK08210 aspartate kinase I; Reviewed
Probab=24.79 E-value=2.2e+02 Score=23.90 Aligned_cols=48 Identities=19% Similarity=0.354 Sum_probs=31.6
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccCHHHHHHHHHHHH
Q 048653 56 PGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETIDAHVVKQALLQVI 114 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai 114 (124)
||.+.+++ ++|.+-|++|.+... .+..+.....+. +.+...++|++.+
T Consensus 353 ~g~~~~i~-~aL~~~~I~i~~~~~---s~~~is~vv~~~-------~~~~a~~~Lh~~f 400 (403)
T PRK08210 353 PGVMAKIV-TALSEEGIEILQSAD---SHTTIWVLVKEE-------DMEKAVNALHDAF 400 (403)
T ss_pred ccHHHHHH-HHHHhCCCCEEEEec---CCCEEEEEEcHH-------HHHHHHHHHHHHh
Confidence 89999999 999999999985322 233333222221 3566677777765
No 158
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.09 E-value=2.2e+02 Score=18.77 Aligned_cols=24 Identities=33% Similarity=0.474 Sum_probs=21.1
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEee
Q 048653 56 PGLLVSILGSAFEELALNVLEARVS 80 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~vS 80 (124)
||.+.+++ ++|++.|++|-....+
T Consensus 15 ~g~~a~IF-~~La~~~InVDmI~qs 38 (78)
T cd04933 15 YGFLAKVF-SIFETLGISVDVVATS 38 (78)
T ss_pred cCHHHHHH-HHHHHcCCcEEEEEec
Confidence 88999999 9999999999887543
No 159
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=23.90 E-value=3e+02 Score=23.17 Aligned_cols=77 Identities=9% Similarity=0.065 Sum_probs=46.7
Q ss_pred hHHHHhHhhHhhhhcCC--CCCcc-----ccchHHhHHHHHHHHHHc-------C----eeEEEEeec-CCCchHHHHHH
Q 048653 4 KAAALHEKLQLLRSITN--SHALS-----KTSIIVDASNYIEELKQK-------G----FMINLFSKK-SCPGLLVSILG 64 (124)
Q Consensus 4 RR~klnerl~~LRslvP--~sk~d-----KaSIl~daI~YikeL~~~-------g----~~v~V~~e~-~c~g~L~~i~~ 64 (124)
|-.++=.+|+.||+.-| ++..| .++...|..+|++.|++. + -..+|...- -|+....+++
T Consensus 173 ~~R~~~~~l~~l~~~~p~pitg~e~~~~~~~~~~~~~~e~~~~L~~~l~el~~~~~~~~~~~RIl~tG~~~~~~~~k~~- 251 (380)
T TIGR02263 173 DNRKLIQALYGLRADEPWKVPSADLYLLLRAGLVIPVEEHNQMLADYLAAARKQEAPIKDNCRVIICGMFCEQPPLNLI- 251 (380)
T ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhccccCCCCCEEEEECcCCCCchHHHH-
Confidence 44566778999998876 66544 233345566676655442 2 123554322 2444457888
Q ss_pred HHHHhcCCeEEEEEeeec
Q 048653 65 SAFEELALNVLEARVSCT 82 (124)
Q Consensus 65 ~ale~l~L~V~~a~vS~~ 82 (124)
+.+|+.|..|.--. .|+
T Consensus 252 ~~iE~~G~~VV~dd-~c~ 268 (380)
T TIGR02263 252 KSIELSGCYIVDDD-FII 268 (380)
T ss_pred HHHHHCCCEEEEec-CCc
Confidence 99999999988433 444
No 160
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=23.56 E-value=1.5e+02 Score=24.36 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHcCee-------EEEEeecCCCchHHHHHHHHHHhcCCeEE
Q 048653 32 DASNYIEELKQKGFM-------INLFSKKSCPGLLVSILGSAFEELALNVL 75 (124)
Q Consensus 32 daI~YikeL~~~g~~-------v~V~~e~~c~g~L~~i~~~ale~l~L~V~ 75 (124)
.-+++|++|+.+|+. -++..... +..+...+ +.|.++|+.|+
T Consensus 189 ~~~~lv~~l~~~gvpIdgIG~Q~H~~~~~~-~~~i~~~l-~~~~~~Gl~i~ 237 (320)
T PF00331_consen 189 AYLNLVKDLKARGVPIDGIGLQSHFDAGYP-PEQIWNAL-DRFASLGLPIH 237 (320)
T ss_dssp HHHHHHHHHHHTTHCS-EEEEEEEEETTSS-HHHHHHHH-HHHHTTTSEEE
T ss_pred HHHHHHHHHHhCCCccceechhhccCCCCC-HHHHHHHH-HHHHHcCCceE
Confidence 367899999999633 34433333 56888889 99999998876
No 161
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.16 E-value=3.7e+02 Score=22.16 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=43.6
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccc----cCCCCccCHHHHHHHHHHHHh
Q 048653 56 PGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKN----EEQGETIDAHVVKQALLQVIR 115 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~----~~~~~~~s~~~ik~aL~~ai~ 115 (124)
..-+.+++ +.+...++++.|-.++-..||.++...-.. ...+...|.+++++-+.-|-.
T Consensus 17 ~~~ik~~I-d~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~ 79 (311)
T cd06570 17 VAVIKRQL-DAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARD 79 (311)
T ss_pred HHHHHHHH-HHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHH
Confidence 34677888 999999999999999988899998654221 011345788999988765543
No 162
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=23.05 E-value=1.3e+02 Score=23.44 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=33.1
Q ss_pred HHhHHHHHHHHHHcCeeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEe
Q 048653 30 IVDASNYIEELKQKGFMINLFSKKSCPGLLVSILGSAFEELALNVLEARV 79 (124)
Q Consensus 30 l~daI~YikeL~~~g~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~v 79 (124)
+-.|++-|++|+++|..+-+..... .-..-.+. +-|+.+|+++..-++
T Consensus 19 i~~a~~~l~~l~~~g~~~~~~Tnn~-~r~~~~~~-~~l~~~g~~~~~~~i 66 (249)
T TIGR01457 19 IPEAETFVHELQKRDIPYLFVTNNS-TRTPESVA-EMLASFDIPATLETV 66 (249)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCCC-CCCHHHHH-HHHHHcCCCCChhhE
Confidence 4468999999999998777765433 22334556 778889998753333
No 163
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=23.03 E-value=4.6e+02 Score=22.08 Aligned_cols=66 Identities=15% Similarity=0.310 Sum_probs=46.8
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec---CceEEEEeeccccCCCCccCHHHHHHHHHHHHh
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT---DTFSLQAIGGKNEEQGETIDAHVVKQALLQVIR 115 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~---~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~ 115 (124)
+.+.|.|... +|+...|- .-|-+.|.++.+++--.. +-|-|....... +...+.+.+.+++-....
T Consensus 8 ~~LtvsCpd~-~GiVaais-~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~---~~~~~~~~l~~~f~~~a~ 76 (287)
T COG0788 8 FILTVSCPDQ-PGIVAAIS-GFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGE---GGPLDREALRAAFAPLAE 76 (287)
T ss_pred eEEEEecCCC-CCcHHHHH-HHHHHcCCceeecccccccccCeEEEEEEEecC---CCcccHHHHHHHHHHHHH
Confidence 5678889888 99999999 999999999998865531 235565544432 334677777777766433
No 164
>PRK08526 threonine dehydratase; Provisional
Probab=22.29 E-value=3.8e+02 Score=22.86 Aligned_cols=34 Identities=15% Similarity=0.326 Sum_probs=30.1
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEee
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVS 80 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS 80 (124)
+.+.|.+..+ ||.|.+++ +.+-+.+-+|.+.+..
T Consensus 327 ~~~~~~~~d~-pg~l~~~~-~~~~~~~~~i~~~~~~ 360 (403)
T PRK08526 327 MKLHVTLVDK-PGALMGLT-DILKEANANIVKIDYD 360 (403)
T ss_pred EEEEEEcCCC-CCHHHHHH-HHHccCCCcEEEEEEE
Confidence 6778899999 99999999 9999999999887663
No 165
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=21.71 E-value=3.4e+02 Score=20.04 Aligned_cols=54 Identities=13% Similarity=0.053 Sum_probs=33.2
Q ss_pred HHHHhc----CCeEEEEEeeecCceE--EEEeeccccCCCCccCHHHHHHHHHHHHhcccc
Q 048653 65 SAFEEL----ALNVLEARVSCTDTFS--LQAIGGKNEEQGETIDAHVVKQALLQVIRNWSE 119 (124)
Q Consensus 65 ~ale~l----~L~V~~a~vS~~~~f~--l~a~~~~~~~~~~~~s~~~ik~aL~~ai~~~~~ 119 (124)
+|++.+ |..+.++-++-.+... ......-.- .+..++.+++.+++..+.....+
T Consensus 54 ~ai~~ae~~~~~~i~~V~v~i~g~~v~~~~~~~~i~i-~~~~i~~~di~~~~~~a~~~~~~ 113 (187)
T smart00842 54 EAVEEAERMAGVKIDSVYVGISGRHLKSVNVSGVVAI-PDKEITQEDIDRVLEAAKAVALP 113 (187)
T ss_pred HHHHHHHHHhCCcccEEEEEEcCCceEEEeeEEEEEC-CCCEECHHHHHHHHHHhhccCCC
Confidence 677777 9999888777554332 221111111 13468999999999887664443
No 166
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=21.67 E-value=1e+02 Score=19.26 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=19.5
Q ss_pred CchHHHHHHHHHHhcCCeEEEEE
Q 048653 56 PGLLVSILGSAFEELALNVLEAR 78 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~ 78 (124)
||.+.++. .+|.+-|++|....
T Consensus 21 ~Gv~a~i~-~~La~~~I~i~~is 42 (65)
T PF13840_consen 21 PGVAAKIF-SALAEAGINIFMIS 42 (65)
T ss_dssp HHHHHHHH-HHHHHTTS-ECEEE
T ss_pred ccHHHHHH-HHHHHCCCCEEEEE
Confidence 89999999 99999999998877
No 167
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.54 E-value=1.4e+02 Score=20.02 Aligned_cols=32 Identities=19% Similarity=0.209 Sum_probs=25.6
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEeeecCceEEEE
Q 048653 56 PGLLVSILGSAFEELALNVLEARVSCTDTFSLQA 89 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a 89 (124)
.|.+.++| +.||+.|+.+-+.-++ -|++++-.
T Consensus 15 vGF~rk~L-~I~E~~~is~Eh~PSG-ID~~Siii 46 (76)
T cd04911 15 VGFGRKLL-SILEDNGISYEHMPSG-IDDISIII 46 (76)
T ss_pred hcHHHHHH-HHHHHcCCCEeeecCC-CccEEEEE
Confidence 68899999 9999999999987644 56666554
No 168
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=20.97 E-value=2.9e+02 Score=23.26 Aligned_cols=49 Identities=14% Similarity=0.278 Sum_probs=36.4
Q ss_pred cccchHHhHHHHHHHHHHcCeeEEEEeecCC---CchHHHHHHHHHHhcCCeE
Q 048653 25 SKTSIIVDASNYIEELKQKGFMINLFSKKSC---PGLLVSILGSAFEELALNV 74 (124)
Q Consensus 25 dKaSIl~daI~YikeL~~~g~~v~V~~e~~c---~g~L~~i~~~ale~l~L~V 74 (124)
+..-.+..+.+.++..+..|+.|.+.|+... +..+.+++ +++.+.|.+.
T Consensus 110 s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~-~~~~~~Ga~~ 161 (378)
T PRK11858 110 TREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFA-KAAEEAGADR 161 (378)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHH-HHHHhCCCCE
Confidence 4455566666777777778988888776553 67889999 8888888764
No 169
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=20.76 E-value=4.2e+02 Score=21.40 Aligned_cols=58 Identities=5% Similarity=0.063 Sum_probs=42.9
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccc-c---------CCCCccCHHHHHHHHHHHH
Q 048653 56 PGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKN-E---------EQGETIDAHVVKQALLQVI 114 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~-~---------~~~~~~s~~~ik~aL~~ai 114 (124)
..-|.+++ +.+...++++.|-.+|-..+|.++...-.. . -.+...|.+++++-+.-|-
T Consensus 15 ~~~lk~~i-d~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~ 82 (303)
T cd02742 15 VESIKRTI-DVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAA 82 (303)
T ss_pred HHHHHHHH-HHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHH
Confidence 34788888 999999999999999999999999754211 0 0133568888888776553
No 170
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=20.68 E-value=3.6e+02 Score=23.34 Aligned_cols=75 Identities=15% Similarity=0.255 Sum_probs=43.3
Q ss_pred hHHHHhHhhHhhhhcCC--CCCccc-----cchH-Hh---HHHHHHHHHHc-------Ce------eEEEEeecCCCc-h
Q 048653 4 KAAALHEKLQLLRSITN--SHALSK-----TSII-VD---ASNYIEELKQK-------GF------MINLFSKKSCPG-L 58 (124)
Q Consensus 4 RR~klnerl~~LRslvP--~sk~dK-----aSIl-~d---aI~YikeL~~~-------g~------~v~V~~e~~c~g-~ 58 (124)
|+.++=.+|+.||..-| ++-.|= ..++ +. +++|+++|-+. |. .-++...- ||+ .
T Consensus 193 r~~~~~~e~~~l~~~~P~Pisg~dl~~~~~~~~~~~~~~~~~~~~~~L~~el~~r~~~G~~~~~~e~~Ril~~g-~p~~~ 271 (430)
T TIGR03191 193 RSTARWADICALNKAKPAPLDEKTMYSLYVLAILHKSSQWCADFMDELYEEVKDRVARGIAAVPNERCRLMSDT-QPPWP 271 (430)
T ss_pred HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHcCCCcCCCCCceEEEeC-CCCCc
Confidence 33334458999998877 553320 2233 22 57777766643 21 11443332 344 2
Q ss_pred HHHHHHHHHHhcCCeEEEEEeee
Q 048653 59 LVSILGSAFEELALNVLEARVSC 81 (124)
Q Consensus 59 L~~i~~~ale~l~L~V~~a~vS~ 81 (124)
-.++. +.||+.|-.|+ +...|
T Consensus 272 ~~k~~-~~ie~~Ga~vV-~~e~~ 292 (430)
T TIGR03191 272 FLKIF-RYLETYGAVSI-GSLYT 292 (430)
T ss_pred hHHHH-HHHHHCCCEEE-Eeccc
Confidence 24888 99999999988 55555
No 171
>TIGR03527 selenium_YedF selenium metabolism protein YedF. Members of this protein family are about 200 amino acids in size, and include the uncharacterized YedF protein of Escherichia coli. This family shares an N-terminal domain, modeled by pfam01206, with the sulfurtransferase TusA (also called SirA). The C-terminal domain includes a typical redox-active disulfide motif, CGXC. This protein family found only among those genomes that also carry the selenium donor protein SelD, and its connection to selenium metabolism is indicated by the method of partial phylogenetic profiling vs. SelD. Its gene typically is found next to selD. Members of this family are found even when selenocysteine and selenouridine biosynthesis pathways are, except for SelD, completely absent, as in Enterococcus faecalis. Its role in selenium metabolism is unclear, but may include either detoxification or a role in labile selenoprotein biosynthesis.
Probab=20.04 E-value=3.7e+02 Score=20.75 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCe-eEEE-------EeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccCHHH
Q 048653 34 SNYIEELKQKGF-MINL-------FSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETIDAHV 105 (124)
Q Consensus 34 I~YikeL~~~g~-~v~V-------~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s~~~ 105 (124)
-.||.-|.+.+. ..+| .+... ..-....+ ..|++.|.+|..+- +|.+.|-+..... . |...+.-+
T Consensus 108 ~~f~~~L~e~~~~p~~Ifl~n~gV~l~~~-~~~~~e~L-k~L~~~Gv~I~~CG-tCl~~~gl~~~~~-v---G~i~nm~~ 180 (194)
T TIGR03527 108 KGFIYTLSELDPLPKRILFVNGGVKLTTE-GSEVLEDL-KELEKKGVEILSCG-TCLDFYGLKDKLK-V---GTITNMYD 180 (194)
T ss_pred HHHHHHHHhCCCCceEEEEEccceeeccC-CchHHHHH-HHHHHCCCEEEEeH-HHHHhcCCccccc-C---CccCCHHH
Confidence 468999988851 2222 22222 22556677 89999999998775 6888776654322 1 44568889
Q ss_pred HHHHHHHH
Q 048653 106 VKQALLQV 113 (124)
Q Consensus 106 ik~aL~~a 113 (124)
|.+++..+
T Consensus 181 i~~~~~~a 188 (194)
T TIGR03527 181 IVEALTTA 188 (194)
T ss_pred HHHHHHhc
Confidence 99888765
Done!