Query 048653
Match_columns 124
No_of_seqs 112 out of 421
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 20:26:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.4 5.9E-14 2E-18 94.7 2.8 43 1-43 14-58 (82)
2 1an4_A Protein (upstream stimu 99.4 8E-14 2.7E-18 89.9 2.7 43 1-43 13-62 (65)
3 4h10_B Circadian locomoter out 99.4 1.3E-13 4.5E-18 91.5 3.7 43 1-43 16-60 (71)
4 4h10_A ARYL hydrocarbon recept 99.3 1.5E-13 5.2E-18 91.5 1.5 42 1-42 17-63 (73)
5 1nkp_A C-MYC, MYC proto-oncoge 99.3 7.5E-13 2.6E-17 90.6 3.0 43 1-43 14-60 (88)
6 1nkp_B MAX protein, MYC proto- 99.3 2.1E-12 7.2E-17 86.7 3.4 43 1-43 10-55 (83)
7 1a0a_A BHLH, protein (phosphat 99.2 7.6E-12 2.6E-16 80.9 4.7 43 1-43 10-60 (63)
8 1hlo_A Protein (transcription 99.2 3.6E-12 1.2E-16 85.2 3.0 43 1-43 20-65 (80)
9 4ati_A MITF, microphthalmia-as 99.2 3.7E-12 1.3E-16 91.3 3.3 43 1-43 35-82 (118)
10 1nlw_A MAD protein, MAX dimeri 99.1 2.9E-11 9.9E-16 81.5 3.8 43 1-43 9-55 (80)
11 3u5v_A Protein MAX, transcript 99.0 1.2E-10 4.2E-15 77.8 1.3 43 1-43 13-60 (76)
12 4f3l_A Mclock, circadian locom 98.9 9.4E-10 3.2E-14 88.9 3.8 43 1-43 20-64 (361)
13 1mdy_A Protein (MYOD BHLH doma 98.9 1.4E-09 4.8E-14 71.3 3.9 43 1-43 20-65 (68)
14 2ql2_B Neurod1, neurogenic dif 98.8 3.9E-09 1.3E-13 67.6 3.8 43 1-43 10-56 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.6 8.7E-09 3E-13 84.3 2.6 43 1-43 21-68 (387)
16 2lfh_A DNA-binding protein inh 98.5 2.8E-08 9.6E-13 65.4 2.3 42 1-42 22-67 (68)
17 4ath_A MITF, microphthalmia-as 97.7 3.7E-05 1.3E-09 52.2 4.0 39 5-43 4-47 (83)
18 4aya_A DNA-binding protein inh 97.4 9.8E-05 3.3E-09 51.4 3.5 42 2-43 34-79 (97)
19 1zpv_A ACT domain protein; str 96.3 0.074 2.5E-06 33.9 10.0 65 45-115 6-71 (91)
20 1u8s_A Glycine cleavage system 94.6 0.2 6.9E-06 36.5 8.3 64 45-115 7-71 (192)
21 2ko1_A CTR148A, GTP pyrophosph 94.4 0.27 9.1E-06 30.7 7.6 38 45-84 6-43 (88)
22 1u8s_A Glycine cleavage system 94.2 0.46 1.6E-05 34.5 9.6 66 45-116 94-168 (192)
23 2nyi_A Unknown protein; protei 93.6 0.32 1.1E-05 35.8 7.9 65 45-116 94-165 (195)
24 2nyi_A Unknown protein; protei 93.6 0.26 9E-06 36.3 7.3 43 45-89 6-49 (195)
25 2f1f_A Acetolactate synthase i 91.7 0.49 1.7E-05 34.9 6.5 36 46-83 5-40 (164)
26 2pc6_A Probable acetolactate s 90.5 0.59 2E-05 34.5 5.9 36 46-83 6-41 (165)
27 2jhe_A Transcription regulator 88.4 1.4 4.7E-05 30.3 6.2 37 46-85 2-38 (190)
28 2fgc_A Acetolactate synthase, 87.3 1.8 6.3E-05 32.9 6.8 63 46-114 31-95 (193)
29 3o1l_A Formyltetrahydrofolate 85.6 7.3 0.00025 31.1 9.8 66 45-115 23-91 (302)
30 3n0v_A Formyltetrahydrofolate 85.2 8.5 0.00029 30.4 10.0 65 45-115 9-76 (286)
31 3p96_A Phosphoserine phosphata 85.1 2.7 9.2E-05 33.6 7.1 65 45-114 13-78 (415)
32 3obi_A Formyltetrahydrofolate 83.1 8 0.00027 30.5 9.0 66 45-115 7-75 (288)
33 3lou_A Formyltetrahydrofolate 78.3 14 0.00049 29.1 9.0 68 45-115 11-81 (292)
34 1y7p_A Hypothetical protein AF 71.8 16 0.00055 28.4 7.4 37 45-83 5-41 (223)
35 2f06_A Conserved hypothetical 68.7 24 0.00083 23.8 8.9 36 46-83 8-43 (144)
36 3nrb_A Formyltetrahydrofolate 68.0 26 0.00088 27.5 8.1 64 45-115 8-74 (287)
37 2xze_Q Charged multivesicular 62.5 3.1 0.00011 24.3 1.3 12 6-17 29-40 (40)
38 2f06_A Conserved hypothetical 56.1 43 0.0015 22.5 7.9 73 31-113 53-131 (144)
39 2dt9_A Aspartokinase; protein- 55.1 51 0.0017 23.0 8.3 73 33-116 74-158 (167)
40 2obb_A Hypothetical protein; s 47.7 20 0.00069 25.3 3.8 43 31-75 27-69 (142)
41 3pdw_A Uncharacterized hydrola 39.4 60 0.002 23.3 5.4 45 28-74 22-66 (266)
42 2re1_A Aspartokinase, alpha an 37.4 73 0.0025 22.2 5.5 22 56-78 117-138 (167)
43 3qgm_A P-nitrophenyl phosphata 36.6 64 0.0022 23.1 5.2 44 29-74 25-68 (268)
44 1g1e_B SIN3A; four-helix bundl 31.6 24 0.00082 23.2 1.9 15 29-43 9-23 (89)
45 3ggz_E Vacuolar protein-sortin 29.0 22 0.00074 19.3 1.1 12 5-16 17-28 (29)
46 1e91_A Paired amphipathic heli 27.8 31 0.001 22.4 1.9 36 28-72 5-43 (85)
47 3s1t_A Aspartokinase; ACT doma 25.6 1.3E+02 0.0045 21.4 5.3 49 56-115 110-158 (181)
48 3fxt_A Nucleoside diphosphate- 25.6 75 0.0026 22.0 3.7 45 27-78 54-98 (113)
49 1jdq_A TM006 protein, hypothet 25.5 59 0.002 21.4 3.1 28 52-80 33-61 (98)
50 2qmx_A Prephenate dehydratase; 24.9 2.5E+02 0.0084 21.9 8.2 56 50-115 206-267 (283)
51 2re1_A Aspartokinase, alpha an 24.1 73 0.0025 22.2 3.5 32 46-79 27-59 (167)
52 2i33_A Acid phosphatase; HAD s 23.2 1.1E+02 0.0036 23.0 4.5 45 27-73 100-144 (258)
53 2czy_A Paired amphipathic heli 23.1 43 0.0015 21.2 1.9 31 30-69 4-37 (77)
54 1vjr_A 4-nitrophenylphosphatas 22.9 1.3E+02 0.0043 21.4 4.7 45 27-74 32-77 (271)
55 3epr_A Hydrolase, haloacid deh 22.8 1.4E+02 0.0049 21.3 5.0 42 31-74 24-65 (264)
56 2f05_A Paired amphipathic heli 22.5 43 0.0015 22.8 1.9 14 30-43 7-20 (105)
57 1pav_A Hypothetical protein TA 22.4 45 0.0015 20.5 1.9 27 52-79 13-40 (78)
58 2qmw_A PDT, prephenate dehydra 21.4 2.9E+02 0.0098 21.4 8.4 54 52-116 197-256 (267)
59 3hz7_A Uncharacterized protein 20.9 73 0.0025 20.4 2.7 17 53-70 9-25 (87)
60 3luy_A Probable chorismate mut 20.8 3.2E+02 0.011 21.8 7.6 59 53-116 217-276 (329)
61 2dtj_A Aspartokinase; protein- 20.5 1.4E+02 0.0048 21.0 4.5 50 56-116 109-158 (178)
62 3ib6_A Uncharacterized protein 20.4 2E+02 0.0067 19.5 5.2 47 25-73 31-77 (189)
63 3ble_A Citramalate synthase fr 20.4 2.2E+02 0.0074 22.4 5.9 44 29-74 135-185 (337)
64 3lvj_C Sulfurtransferase TUSA; 20.3 98 0.0033 19.3 3.2 28 52-80 17-45 (82)
65 2jqq_A Conserved oligomeric go 20.2 56 0.0019 25.0 2.3 39 5-43 53-91 (204)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.41 E-value=5.9e-14 Score=94.74 Aligned_cols=43 Identities=21% Similarity=0.431 Sum_probs=41.1
Q ss_pred CchhHHHHhHhhHhhhhcCC-C-CCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN-S-HALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP-~-sk~dKaSIl~daI~YikeL~~~ 43 (124)
||+||.++|++|..||++|| . +|+||++||.+||+||++|+.+
T Consensus 14 ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~ 58 (82)
T 1am9_A 14 EKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHS 58 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999 4 8999999999999999999986
No 2
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.40 E-value=8e-14 Score=89.86 Aligned_cols=43 Identities=33% Similarity=0.475 Sum_probs=39.9
Q ss_pred CchhHHHHhHhhHhhhhcCC-CC------CccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN-SH------ALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP-~s------k~dKaSIl~daI~YikeL~~~ 43 (124)
||+||.+||+.|..|+++|| .. |+||++||.+||+||++|+++
T Consensus 13 Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~ 62 (65)
T 1an4_A 13 ERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQS 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999 43 789999999999999999974
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.40 E-value=1.3e-13 Score=91.52 Aligned_cols=43 Identities=14% Similarity=0.333 Sum_probs=40.9
Q ss_pred CchhHHHHhHhhHhhhhcCC--CCCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN--SHALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP--~sk~dKaSIl~daI~YikeL~~~ 43 (124)
||+||.++|++|..|+++|| ..|+||+|||..||+||+.|+..
T Consensus 16 ErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~ 60 (71)
T 4h10_B 16 EKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEI 60 (71)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999 56999999999999999999986
No 4
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.35 E-value=1.5e-13 Score=91.47 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=39.7
Q ss_pred CchhHHHHhHhhHhhhhcCC-C----CCccccchHHhHHHHHHHHHH
Q 048653 1 EHKKAAALHEKLQLLRSITN-S----HALSKTSIIVDASNYIEELKQ 42 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP-~----sk~dKaSIl~daI~YikeL~~ 42 (124)
||+||+++|+.|..|+++|| . +|+||||||..||+||+.|+.
T Consensus 17 ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 17 EKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999 3 799999999999999999974
No 5
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.31 E-value=7.5e-13 Score=90.57 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=40.7
Q ss_pred CchhHHHHhHhhHhhhhcCC-C---CCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN-S---HALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP-~---sk~dKaSIl~daI~YikeL~~~ 43 (124)
||+||.+||+.|..||++|| + .|++|++||.+||+||++|+.+
T Consensus 14 ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~ 60 (88)
T 1nkp_A 14 ERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAE 60 (88)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999 4 5999999999999999999976
No 6
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.27 E-value=2.1e-12 Score=86.72 Aligned_cols=43 Identities=23% Similarity=0.445 Sum_probs=40.8
Q ss_pred CchhHHHHhHhhHhhhhcCC---CCCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN---SHALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP---~sk~dKaSIl~daI~YikeL~~~ 43 (124)
||+||..||+.|..||++|| ..|++|++||.+||+||+.|+.+
T Consensus 10 Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~ 55 (83)
T 1nkp_B 10 ERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999 48999999999999999999975
No 7
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.24 E-value=7.6e-12 Score=80.91 Aligned_cols=43 Identities=30% Similarity=0.369 Sum_probs=39.6
Q ss_pred CchhHHHHhHhhHhhhhcCC-C-------CCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN-S-------HALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP-~-------sk~dKaSIl~daI~YikeL~~~ 43 (124)
||+||.++|..|..|++++| . ++.+||+||..||+||+.|+++
T Consensus 10 Er~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~ 60 (63)
T 1a0a_A 10 EQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQN 60 (63)
T ss_dssp THHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999 3 4567999999999999999975
No 8
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.23 E-value=3.6e-12 Score=85.25 Aligned_cols=43 Identities=23% Similarity=0.426 Sum_probs=40.5
Q ss_pred CchhHHHHhHhhHhhhhcCC-C--CCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN-S--HALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP-~--sk~dKaSIl~daI~YikeL~~~ 43 (124)
||+||..||+.|..||++|| . .|++|++||..||+||+.|++.
T Consensus 20 Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~ 65 (80)
T 1hlo_A 20 ERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRK 65 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999 3 6999999999999999999975
No 9
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.23 E-value=3.7e-12 Score=91.29 Aligned_cols=43 Identities=19% Similarity=0.454 Sum_probs=39.8
Q ss_pred CchhHHHHhHhhHhhhhcCC-CC----CccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN-SH----ALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP-~s----k~dKaSIl~daI~YikeL~~~ 43 (124)
||+||.++|++|..|+++|| .+ |+||++||.+||+||+.|+..
T Consensus 35 ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~ 82 (118)
T 4ati_A 35 ERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQRE 82 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999 43 678999999999999999987
No 10
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.13 E-value=2.9e-11 Score=81.47 Aligned_cols=43 Identities=21% Similarity=0.307 Sum_probs=40.3
Q ss_pred CchhHHHHhHhhHhhhhcCC-C---CCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN-S---HALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP-~---sk~dKaSIl~daI~YikeL~~~ 43 (124)
||+||..||+.|..||++|| + +|+.|++||..|++||+.|+.+
T Consensus 9 ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~ 55 (80)
T 1nlw_A 9 EKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDS 55 (80)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999 4 5788999999999999999986
No 11
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=98.96 E-value=1.2e-10 Score=77.84 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=38.0
Q ss_pred CchhHHHHhHhhHhhhhcCC-CCCcc----ccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN-SHALS----KTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP-~sk~d----KaSIl~daI~YikeL~~~ 43 (124)
||+||..+|+.|..||.+|| ..+.| |++||..||+||+.|+++
T Consensus 13 ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~ 60 (76)
T 3u5v_A 13 ERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQ 60 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999 44455 456999999999999986
No 12
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.87 E-value=9.4e-10 Score=88.93 Aligned_cols=43 Identities=14% Similarity=0.350 Sum_probs=40.8
Q ss_pred CchhHHHHhHhhHhhhhcCC--CCCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN--SHALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP--~sk~dKaSIl~daI~YikeL~~~ 43 (124)
||+||+++|+.|..|++++| .+|+||+|||..||.||+.|+..
T Consensus 20 e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 20 EKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999 67999999999999999999875
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.87 E-value=1.4e-09 Score=71.34 Aligned_cols=43 Identities=28% Similarity=0.472 Sum_probs=39.9
Q ss_pred CchhHHHHhHhhHhhhhcCC---CCCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN---SHALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP---~sk~dKaSIl~daI~YikeL~~~ 43 (124)
||+|+..+|+.|..||.++| -.|+.|+.||-.||+||..|++.
T Consensus 20 ER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~ 65 (68)
T 1mdy_A 20 ERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQAL 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999 47899999999999999999863
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.79 E-value=3.9e-09 Score=67.59 Aligned_cols=43 Identities=30% Similarity=0.358 Sum_probs=39.6
Q ss_pred CchhHHHHhHhhHhhhhcCC-C---CCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN-S---HALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP-~---sk~dKaSIl~daI~YikeL~~~ 43 (124)
||+|+..+|+-|..||.++| . .|+.|..+|--||+||..|++.
T Consensus 10 ER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~ 56 (60)
T 2ql2_B 10 ERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEI 56 (60)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999 3 4799999999999999999863
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.64 E-value=8.7e-09 Score=84.34 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=40.4
Q ss_pred CchhHHHHhHhhHhhhhcCC-----CCCccccchHHhHHHHHHHHHHc
Q 048653 1 EHKKAAALHEKLQLLRSITN-----SHALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP-----~sk~dKaSIl~daI~YikeL~~~ 43 (124)
||+||.++|+.|..|++++| .+|+||+|||..||.|||.|+..
T Consensus 21 ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 21 EKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 68999999999999999999 58999999999999999999854
No 16
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.54 E-value=2.8e-08 Score=65.41 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=39.0
Q ss_pred CchhHHHHhHhhHhhhhcCC----CCCccccchHHhHHHHHHHHHH
Q 048653 1 EHKKAAALHEKLQLLRSITN----SHALSKTSIIVDASNYIEELKQ 42 (124)
Q Consensus 1 ER~RR~klnerl~~LRslvP----~sk~dKaSIl~daI~YikeL~~ 42 (124)
||+|...||+-|..||.+|| -+|+.|.-+|--||+||..||.
T Consensus 22 ER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 22 PLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp CSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 78899999999999999999 3689999999999999999985
No 17
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=97.68 E-value=3.7e-05 Score=52.21 Aligned_cols=39 Identities=18% Similarity=0.397 Sum_probs=35.4
Q ss_pred HHHHhHhhHhhhhcCC-C----CCccccchHHhHHHHHHHHHHc
Q 048653 5 AAALHEKLQLLRSITN-S----HALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 5 R~klnerl~~LRslvP-~----sk~dKaSIl~daI~YikeL~~~ 43 (124)
|..+|+++..|..+|| . .+.+|++||--|++||+.|++.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e 47 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQRE 47 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHH
Confidence 6789999999999999 3 3689999999999999999875
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.43 E-value=9.8e-05 Score=51.40 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=36.5
Q ss_pred chhHHHHhHhhHhhhhcCC----CCCccccchHHhHHHHHHHHHHc
Q 048653 2 HKKAAALHEKLQLLRSITN----SHALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 2 R~RR~klnerl~~LRslvP----~sk~dKaSIl~daI~YikeL~~~ 43 (124)
|.|=..+|+-|..||..+| -.|+.|.-+|--||+||..|++-
T Consensus 34 r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~ 79 (97)
T 4aya_A 34 MSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIA 79 (97)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHH
Confidence 3444679999999999999 35799999999999999999975
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.30 E-value=0.074 Score=33.94 Aligned_cols=65 Identities=18% Similarity=0.322 Sum_probs=49.3
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCc-eEEEEeeccccCCCCccCHHHHHHHHHHHHh
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDT-FSLQAIGGKNEEQGETIDAHVVKQALLQVIR 115 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~-f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~ 115 (124)
+.+.|.|..+ ||+|.++. ..|.+.|.++.+.+....++ |.+.... +. ....+.+.+..+|.+...
T Consensus 6 ~~l~v~~~Dr-pGila~vt-~~la~~~~NI~~i~~~~~~~~~~~~i~v-~~---~~~~~l~~l~~~L~~~~~ 71 (91)
T 1zpv_A 6 AIITVVGKDK-SGIVAGVS-GKIAELGLNIDDISQTVLDEYFTMMAVV-SS---DEKQDFTYLRNEFEAFGQ 71 (91)
T ss_dssp EEEEEEESCC-TTHHHHHH-HHHHHTTCEEEEEEEEEETTEEEEEEEE-EE---SSCCCHHHHHHHHHHHHH
T ss_pred EEEEEEECCC-CCHHHHHH-HHHHHcCCCEEEEEeEEEcCEEEEEEEE-Ee---CCCCCHHHHHHHHHHHHH
Confidence 4678899999 99999999 99999999999998877655 4444333 22 123478889999887654
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=94.59 E-value=0.2 Score=36.46 Aligned_cols=64 Identities=14% Similarity=0.276 Sum_probs=48.4
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC-ceEEEEeeccccCCCCccCHHHHHHHHHHHHh
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD-TFSLQAIGGKNEEQGETIDAHVVKQALLQVIR 115 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~-~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~ 115 (124)
+.|.|.|+.+ ||++..+. .+|.+.|++|.+++..... .|.+-... ... . .+.+.++++|.++..
T Consensus 7 ~~itv~~~Dr-pGiva~vt-~~La~~g~NI~d~~~~~~~~~f~~~~~v-~~~--~--~~~~~l~~~L~~~~~ 71 (192)
T 1u8s_A 7 LVITAVGTDR-PGICNEVV-RLVTQAGCNIIDSRIAMFGKEFTLLMLI-SGS--P--SNITRVETTLPLLGQ 71 (192)
T ss_dssp EEEEEEEECC-TTHHHHHH-HHHHHTTCEEEEEEEEEETTEEEEEEEE-EEC--H--HHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCC-CcHHHHHH-HHHHHCCCCEEeeeeeecCCceEEEEEE-ecC--C--CCHHHHHHHHHHHHH
Confidence 4578999999 99999999 9999999999999887654 56664333 221 1 256778888877654
No 21
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=94.44 E-value=0.27 Score=30.73 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=33.6
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDT 84 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~ 84 (124)
+.++|.+..+ ||.|.+|. .+|.+.|+++.+.+....++
T Consensus 6 ~~l~v~~~Dr-~G~L~~I~-~~la~~~inI~~i~~~~~~~ 43 (88)
T 2ko1_A 6 AGIRIVGEDK-NGMTNQIT-GVISKFDTNIRTIVLNAKDG 43 (88)
T ss_dssp EEEEEEEECC-TTHHHHHH-HHHTTSSSCEEEEEEEECSS
T ss_pred EEEEEEEECC-CcHHHHHH-HHHHHCCCCeEEEEEEEcCC
Confidence 3567888999 99999999 99999999999999887665
No 22
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=94.23 E-value=0.46 Score=34.50 Aligned_cols=66 Identities=8% Similarity=0.084 Sum_probs=50.6
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC---------ceEEEEeeccccCCCCccCHHHHHHHHHHHHh
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD---------TFSLQAIGGKNEEQGETIDAHVVKQALLQVIR 115 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~---------~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~ 115 (124)
+.|.|.|..+ ||++..|. +.|.+.|++|.+++..+.. .|.+...... ....+.+.++++|.....
T Consensus 94 ~~l~v~~~D~-~Gil~~v~-~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~----~~~~~~~~l~~~l~~~~~ 167 (192)
T 1u8s_A 94 VEVYVESDDK-LGLTEKFT-QFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARV----DSGCNLMQLQEEFDALCT 167 (192)
T ss_dssp EEEEEEESCC-TTHHHHHH-HHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEE----CTTSCHHHHHHHHHHHHH
T ss_pred EEEEEEeCCC-ccHHHHHH-HHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeC----CCCCCHHHHHHHHHHHHH
Confidence 5678889888 99999999 9999999999998877543 4666654322 124578899999987655
Q ss_pred c
Q 048653 116 N 116 (124)
Q Consensus 116 ~ 116 (124)
.
T Consensus 168 ~ 168 (192)
T 1u8s_A 168 A 168 (192)
T ss_dssp H
T ss_pred H
Confidence 4
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=93.65 E-value=0.32 Score=35.85 Aligned_cols=65 Identities=14% Similarity=0.163 Sum_probs=50.6
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC-------ceEEEEeeccccCCCCccCHHHHHHHHHHHHhc
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD-------TFSLQAIGGKNEEQGETIDAHVVKQALLQVIRN 116 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~-------~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~~ 116 (124)
+.|.|.|..+ ||++..|- ..|-+.|+++.+++..+.. -|.|....... ...+ +.++++|......
T Consensus 94 ~iltv~g~Dr-pGiva~Vt-~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~----~~~~-~~l~~~l~~~a~~ 165 (195)
T 2nyi_A 94 YELYVEGPDS-EGIVEAVT-AVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP----FPLY-QEVVTALSRVEEE 165 (195)
T ss_dssp EEEEEEEECC-TTHHHHHH-HHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE----GGGH-HHHHHHHHHHHHH
T ss_pred EEEEEEeCCC-cCHHHHHH-HHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC----CCcc-HHHHHHHHHHHHH
Confidence 7889999999 99999999 9999999999999888653 57776554321 1235 7888888866543
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=93.62 E-value=0.26 Score=36.34 Aligned_cols=43 Identities=19% Similarity=0.451 Sum_probs=37.1
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec-CceEEEE
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT-DTFSLQA 89 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~-~~f~l~a 89 (124)
+.|.|.|+.+ ||++..|. .+|.+.|++|++++.... ++|.|-.
T Consensus 6 ~~ltv~~~Dr-pGiva~vs-~~La~~g~NI~da~q~~~~~~f~m~~ 49 (195)
T 2nyi_A 6 FVVSVAGSDR-VGIVHDFS-WALKNISANVESSRMACLGGDFAMIV 49 (195)
T ss_dssp EEEEEEEECC-TTHHHHHH-HHHHHTTCEEEEEEEEEETTEEEEEE
T ss_pred EEEEEEeCCC-CcHHHHHH-HHHHHCCCCEEEEEeEEECCeEEEEE
Confidence 4678999999 99999999 999999999999988755 5787743
No 25
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=91.67 E-value=0.49 Score=34.87 Aligned_cols=36 Identities=19% Similarity=0.395 Sum_probs=32.5
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD 83 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~ 83 (124)
.+.|..+.+ ||.|.++. ..|.+.|+++.+.++...+
T Consensus 5 ~IsV~v~Nr-pGvLarIt-~lfs~rg~NI~Sl~v~~t~ 40 (164)
T 2f1f_A 5 ILSVLLENE-SGALSRVI-GLFSQRGYNIESLTVAPTD 40 (164)
T ss_dssp EEEEEEECC-TTHHHHHH-HHHHTTTCCCSEEEEEECS
T ss_pred EEEEEEeCC-CcHHHHHH-HHHHHCCCCeeeceeeecC
Confidence 577889999 99999999 9999999999999887664
No 26
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=90.48 E-value=0.59 Score=34.54 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=32.4
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD 83 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~ 83 (124)
.+.|..+.+ ||.|.++. ..|...|+++.+.++...+
T Consensus 6 ~IsV~veNr-pGvL~rI~-~lfs~rg~NI~Sl~v~~t~ 41 (165)
T 2pc6_A 6 IISLLMENE-AGALSRVA-GLFSARGYNIESLSVAPTE 41 (165)
T ss_dssp EEEEEEECS-TTHHHHHH-HHHHHHTCCCCEEEEEECS
T ss_pred EEEEEEeCC-CcHHHHHH-HHHHHCCCcEEEEEEEecC
Confidence 577889999 99999999 9999999999999887654
No 27
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=88.39 E-value=1.4 Score=30.30 Aligned_cols=37 Identities=11% Similarity=0.167 Sum_probs=33.5
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCce
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTF 85 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f 85 (124)
.|+|.|..+ +|+|.+|+ ++|.+.++++..+++... |+
T Consensus 2 ~~~v~~~dr-~g~l~~i~-~~l~~~~~ni~~~~~~~~-g~ 38 (190)
T 2jhe_A 2 RLEVFCEDR-LGLTRELL-DLLVLRGIDLRGIEIDPI-GR 38 (190)
T ss_dssp EEEEEECSC-TTHHHHHH-HHHHHTTCCEEEEEEETT-TE
T ss_pred EEEEEEecC-CcHHHHHH-HHHHHcCCCeEEEEEecC-CE
Confidence 578999999 99999999 999999999999999766 54
No 28
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=87.28 E-value=1.8 Score=32.88 Aligned_cols=63 Identities=14% Similarity=0.336 Sum_probs=43.8
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC--ceEEEEeeccccCCCCccCHHHHHHHHHHHH
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD--TFSLQAIGGKNEEQGETIDAHVVKQALLQVI 114 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~--~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai 114 (124)
.+.|..+.+ ||.|.+|. ..|...|+++.+..+...+ +.+--.+.+. +..-..++|+..|.+.+
T Consensus 31 ~LsVlVeN~-pGvLaRIt-glfsrRG~NI~SLtV~~ted~gisRitIvV~----g~e~~ieqL~kQL~KLi 95 (193)
T 2fgc_A 31 LVSMLVHNK-PGVMRKVA-NLFARRGFNISSITVGESETPGLSRLVIMVK----GDDKTIEQIEKQAYKLV 95 (193)
T ss_dssp EEEEEEECC-TTHHHHHH-HHHHTTTCEEEEEEEEECSSTTEEEEEEEEE----ECTTHHHHHHHHHTTST
T ss_pred EEEEEECCC-ChHHHHHH-HHHHHCCceEEEEEeeccCCCCEEEEEEEEE----CCHHHHHHHHHHhcCcC
Confidence 467888999 99999999 9999999999998887554 3333333332 12234566666666543
No 29
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=85.57 E-value=7.3 Score=31.08 Aligned_cols=66 Identities=11% Similarity=0.097 Sum_probs=50.9
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeec---CceEEEEeeccccCCCCccCHHHHHHHHHHHHh
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCT---DTFSLQAIGGKNEEQGETIDAHVVKQALLQVIR 115 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~---~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~ 115 (124)
+.+.|.|..+ ||+...|- ..|-+.|.++.+++-... +-|.|...+... +...+.+.+++++...-.
T Consensus 23 ~iLtv~c~Dr-pGIVa~VS-~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~---~~~~~~~~L~~~l~~la~ 91 (302)
T 3o1l_A 23 FRLVIACPDR-VGIVAKVS-NFLASHNGWITEASHHSDNLSGWFFMRHEIRAD---TLPFDLDGFREAFTPIAE 91 (302)
T ss_dssp EEEEEEEECC-TTHHHHHH-HHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGG---GSSSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCC-CCHHHHHH-HHHHHCCCCEEEeeEEecCCCCeEEEEEEEecC---CCCCCHHHHHHHHHHHHH
Confidence 6789999999 99999999 999999999999887753 347776544322 224678899998865433
No 30
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=85.23 E-value=8.5 Score=30.36 Aligned_cols=65 Identities=11% Similarity=0.041 Sum_probs=49.6
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeee---cCceEEEEeeccccCCCCccCHHHHHHHHHHHHh
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSC---TDTFSLQAIGGKNEEQGETIDAHVVKQALLQVIR 115 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~---~~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~ 115 (124)
+.+.|.|..+ ||+...+- ..|-+.|.++.+++-.. .+-|.|....... ...+.+.+++++...-.
T Consensus 9 ~vLtv~c~Dr-pGIVa~Vs-~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~----~~~~~~~L~~~f~~la~ 76 (286)
T 3n0v_A 9 WILTADCPSM-LGTVDVVT-RYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQP----DDFDEAGFRAGLAERSE 76 (286)
T ss_dssp EEEEEEEECC-TTHHHHHH-HHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC----SSCCHHHHHHHHHHHHG
T ss_pred EEEEEEeCCC-CCHHHHHH-HHHHHCCCCeeeeeeeccCCCCeeEEEEEEecC----CCCCHHHHHHHHHHHHH
Confidence 5688999999 99999999 99999999999988763 2346666544321 24688999999876543
No 31
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=85.11 E-value=2.7 Score=33.60 Aligned_cols=65 Identities=11% Similarity=0.261 Sum_probs=48.6
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCc-eEEEEeeccccCCCCccCHHHHHHHHHHHH
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDT-FSLQAIGGKNEEQGETIDAHVVKQALLQVI 114 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~-f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai 114 (124)
+.|.|.|..+ ||+...+. ..|-+.|.++.+++-+...| |.|-..+.-. +...+.+.++.+|....
T Consensus 13 ~~lt~~g~Dr-~Giv~~vs-~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~---~~~~~~~~l~~~l~~~~ 78 (415)
T 3p96_A 13 VLITVTGVDQ-PGVTATLF-EVLSRHGVELLNVEQVVIRHRLTLGVLVCCP---ADVADGPALRHDVEAAI 78 (415)
T ss_dssp EEEEEEEECC-TTHHHHHH-HHHTTTTCEEEEEEEEEETTEEEEEEEEEEC---HHHHTSHHHHHHHHHHH
T ss_pred EEEEEEcCCC-CCHHHHHH-HHHHHCCCCEEEeeeEEECCEeEEEEEEEec---CCcCCHHHHHHHHHHHH
Confidence 5689999999 99999999 99999999999988776654 6666544321 11235578888886653
No 32
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=83.08 E-value=8 Score=30.53 Aligned_cols=66 Identities=12% Similarity=0.229 Sum_probs=49.4
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeee---cCceEEEEeeccccCCCCccCHHHHHHHHHHHHh
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSC---TDTFSLQAIGGKNEEQGETIDAHVVKQALLQVIR 115 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~---~~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~ 115 (124)
+.+.|.|..+ ||+...+- ..|-+.|.++.+++-.. .+-|.|...+.-. +...+.+.+++++...-.
T Consensus 7 ~iLtv~g~Dr-pGIVa~Vs-~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~---~~~~~~~~L~~~f~~la~ 75 (288)
T 3obi_A 7 YVLTLSCPDR-AGIVSAVS-TFLFENGQNILDAQQYNDTESGHFFMRVVFNAA---AKVIPLASLRTGFGVIAA 75 (288)
T ss_dssp EEEEEEEECC-TTHHHHHH-HHHHHTTEEEEEEEEEEETTTTEEEEEEEEEES---SCCCCHHHHHHHHHHHHH
T ss_pred EEEEEECCCC-CCHHHHHH-HHHHHCCCcEEeeeeeecCCCCceEEEEEEEcC---CCCCCHHHHHHHHHHHHH
Confidence 4678999999 99999999 99999999999988642 2346666544321 224678899999875543
No 33
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=78.33 E-value=14 Score=29.12 Aligned_cols=68 Identities=10% Similarity=0.240 Sum_probs=48.4
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeee---cCceEEEEeeccccCCCCccCHHHHHHHHHHHHh
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSC---TDTFSLQAIGGKNEEQGETIDAHVVKQALLQVIR 115 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~---~~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~ 115 (124)
+.+.|.|..+ ||+...|- ..|-+.|.++.+++-.. .+.|.|........ .+...+.+.+++++...-.
T Consensus 11 ~vLtv~c~Dr-~GIVa~Vs-~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-~~~~~~~~~L~~~f~~la~ 81 (292)
T 3lou_A 11 FVLTLSCPSA-AGQVAAVV-GLLDRHRCYVDELTVFDDDLSARFFVRCVFHATD-DADALRVDALRREFEPIAE 81 (292)
T ss_dssp EEEEEEEESC-SCHHHHHH-HHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC-----CCHHHHHHHHHHHHH
T ss_pred EEEEEEcCCC-CCHHHHHH-HHHHHCCCCEEeeEEEecCCCCceEEEEEEEccC-cccCCCHHHHHHHHHHHHH
Confidence 5678999999 99999999 99999999999988763 23466665432210 0114678889988865433
No 34
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=71.83 E-value=16 Score=28.37 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=29.2
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD 83 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~ 83 (124)
+.+.|..+.+ ||+|.+|+ ..|.+.+.++.+.+.+...
T Consensus 5 VtL~I~a~DR-pGLLsDIt-~vLAe~kiNIltIn~~~~~ 41 (223)
T 1y7p_A 5 RGLRIIAENK-IGVLRDLT-TIIAEEGGNITFAQTFLIK 41 (223)
T ss_dssp EEEEEEEECC-TTHHHHHH-HHCC----CEEEEEEEECC
T ss_pred EEEEEEEcCC-CCHHHHHH-HHHHHcCCCceEEEEEccc
Confidence 4577889999 99999999 9999999999999998863
No 35
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=68.74 E-value=24 Score=23.85 Aligned_cols=36 Identities=11% Similarity=0.261 Sum_probs=29.7
Q ss_pred eEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecC
Q 048653 46 MINLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTD 83 (124)
Q Consensus 46 ~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~ 83 (124)
.+.|..+.+ ||.|.++. .+|.+.|++|....++...
T Consensus 8 ~i~v~v~d~-~G~l~~i~-~~la~~~inI~~i~~~~~~ 43 (144)
T 2f06_A 8 QLSIFLENK-SGRLTEVT-EVLAKENINLSALCIAENA 43 (144)
T ss_dssp EEEEEECSS-SSHHHHHH-HHHHHTTCCEEEEEEEECS
T ss_pred EEEEEecCC-CcHHHHHH-HHHHHCCCCEEEEEEEecC
Confidence 456788899 99999999 9999999999876655443
No 36
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=67.95 E-value=26 Score=27.54 Aligned_cols=64 Identities=14% Similarity=0.228 Sum_probs=45.0
Q ss_pred eeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEEeee---cCceEEEEeeccccCCCCccCHHHHHHHHHHHHh
Q 048653 45 FMINLFSKKSCPGLLVSILGSAFEELALNVLEARVSC---TDTFSLQAIGGKNEEQGETIDAHVVKQALLQVIR 115 (124)
Q Consensus 45 ~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~---~~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~ 115 (124)
+.+.|.|..+ ||+...+- ..|-+.|.++.+++-.. .+-|.|...+... . .+...+++++...-.
T Consensus 8 ~vLtv~c~Dr-~GIVa~Vs-~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~---~--~~~~~L~~~f~~la~ 74 (287)
T 3nrb_A 8 YVLSLACQDA-PGIVSEVS-TFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP---V--AGVNDFNSAFGKVVE 74 (287)
T ss_dssp EEEEEEEECC-TTHHHHHH-HHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC---C-----CHHHHHHHHHHG
T ss_pred EEEEEECCCC-CCHHHHHH-HHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC---C--CCHHHHHHHHHHHHH
Confidence 5678999999 99999999 99999999999988752 2346666544321 1 234478887765433
No 37
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=62.51 E-value=3.1 Score=24.28 Aligned_cols=12 Identities=42% Similarity=0.631 Sum_probs=10.6
Q ss_pred HHHhHhhHhhhh
Q 048653 6 AALHEKLQLLRS 17 (124)
Q Consensus 6 ~klnerl~~LRs 17 (124)
+.|+.||.+|||
T Consensus 29 ~~MqsRLaALRS 40 (40)
T 2xze_Q 29 EAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC
Confidence 469999999997
No 38
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=56.13 E-value=43 Score=22.52 Aligned_cols=73 Identities=12% Similarity=0.168 Sum_probs=45.6
Q ss_pred HhHHHHHHHHHHcCeeE------EEEeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccCHH
Q 048653 31 VDASNYIEELKQKGFMI------NLFSKKSCPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETIDAH 104 (124)
Q Consensus 31 ~daI~YikeL~~~g~~v------~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s~~ 104 (124)
.|.=...+-|++.|+.+ -|..+.+ ||.+.+++ ++|.+-|+++...-++..++- ..... .. -+.+
T Consensus 53 ~d~~~a~~~L~~~G~~v~~~svv~v~~~d~-pGvla~i~-~~L~~~~InI~~~~~~~~~~~-~~~~i-~~------~d~~ 122 (144)
T 2f06_A 53 SDPDKAYKALKDNHFAVNITDVVGISCPNV-PGALAKVL-GFLSAEGVFIEYMYSFANNNV-ANVVI-RP------SNMD 122 (144)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEEEEEEEESS-TTHHHHHH-HHHHHTTCCEEEEEEEEETTE-EEEEE-EE------SCHH
T ss_pred CCHHHHHHHHHHcCCeEeeeeEEEEEeCCC-CcHHHHHH-HHHHHCCCCEEEEEEEccCCc-EEEEE-Ee------CCHH
Confidence 45556666677777433 3345667 99999999 999999999966444322221 11111 11 1667
Q ss_pred HHHHHHHHH
Q 048653 105 VVKQALLQV 113 (124)
Q Consensus 105 ~ik~aL~~a 113 (124)
...++|+++
T Consensus 123 ~A~~~L~~~ 131 (144)
T 2f06_A 123 KCIEVLKEK 131 (144)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 777777764
No 39
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=55.08 E-value=51 Score=23.02 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=43.9
Q ss_pred HHHHHHHHHHc-CeeE---------EEEe-ecC-CCchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCc
Q 048653 33 ASNYIEELKQK-GFMI---------NLFS-KKS-CPGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGET 100 (124)
Q Consensus 33 aI~YikeL~~~-g~~v---------~V~~-e~~-c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~ 100 (124)
|.+.+++++.. |+.+ .|.. .++ .||.+.+++ ++|.+-|++|.... +.+ ..+-....+.
T Consensus 74 a~~~L~~~~~~~~~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f-~aL~~~~InI~~is--~Se-~~is~vv~~~------ 143 (167)
T 2dt9_A 74 ALEALEPVLAEIGGEAILRPDIAKVSIVGVGLASTPEVPAKMF-QAVASTGANIEMIA--TSE-VRISVIIPAE------ 143 (167)
T ss_dssp HHHHHHHHHHHHCCEEEEECSEEEEEEEESSGGGSTHHHHHHH-HHHHHTTCCCCEEE--ECS-SEEEEEEEGG------
T ss_pred HHHHHHHHHHHhCCcEEEeCCEEEEEEECCCcccCcCHHHHHH-HHHHHCCCCEEEEE--ccC-CEEEEEEeHH------
Confidence 67777777665 4432 2222 111 289999999 99999999996554 222 2333333222
Q ss_pred cCHHHHHHHHHHHHhc
Q 048653 101 IDAHVVKQALLQVIRN 116 (124)
Q Consensus 101 ~s~~~ik~aL~~ai~~ 116 (124)
+.+..-++|++++..
T Consensus 144 -d~~~Av~~Lh~~f~~ 158 (167)
T 2dt9_A 144 -YAEAALRAVHQAFEL 158 (167)
T ss_dssp -GHHHHHHHHHHHTC-
T ss_pred -HHHHHHHHHHHHHcC
Confidence 456666777776653
No 40
>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25
Probab=47.73 E-value=20 Score=25.26 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=33.6
Q ss_pred HhHHHHHHHHHHcCeeEEEEeecCCCchHHHHHHHHHHhcCCeEE
Q 048653 31 VDASNYIEELKQKGFMINLFSKKSCPGLLVSILGSAFEELALNVL 75 (124)
Q Consensus 31 ~daI~YikeL~~~g~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~ 75 (124)
-.|++.|++|+++|+.|-+...+. +..+..++ +.|+++|+..-
T Consensus 27 ~~~~~al~~l~~~G~~iii~TgR~-~~~~~~~~-~~l~~~gi~~~ 69 (142)
T 2obb_A 27 PFAVETLKLLQQEKHRLILWSVRE-GELLDEAI-EWCRARGLEFY 69 (142)
T ss_dssp TTHHHHHHHHHHTTCEEEECCSCC-HHHHHHHH-HHHHTTTCCCS
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCC-cccHHHHH-HHHHHcCCCeE
Confidence 479999999999998876654443 44677788 99999999763
No 41
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0
Probab=39.43 E-value=60 Score=23.29 Aligned_cols=45 Identities=13% Similarity=0.253 Sum_probs=33.4
Q ss_pred chHHhHHHHHHHHHHcCeeEEEEeecCCCchHHHHHHHHHHhcCCeE
Q 048653 28 SIIVDASNYIEELKQKGFMINLFSKKSCPGLLVSILGSAFEELALNV 74 (124)
Q Consensus 28 SIl~daI~YikeL~~~g~~v~V~~e~~c~g~L~~i~~~ale~l~L~V 74 (124)
.++-.|++-|++|+++|..|-+...+. ......+. +.++.+|+++
T Consensus 22 ~~~~~~~~ai~~l~~~Gi~v~laTgrs-~r~~~~~~-~~l~~lg~~~ 66 (266)
T 3pdw_A 22 EKIEEACEFVRTLKDRGVPYLFVTNNS-SRTPKQVA-DKLVSFDIPA 66 (266)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESCC-SSCHHHHH-HHHHHTTCCC
T ss_pred EeCccHHHHHHHHHHCCCeEEEEeCCC-CCCHHHHH-HHHHHcCCCC
Confidence 456789999999999998886654433 33455666 7889999974
No 42
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=37.43 E-value=73 Score=22.20 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=20.2
Q ss_pred CchHHHHHHHHHHhcCCeEEEEE
Q 048653 56 PGLLVSILGSAFEELALNVLEAR 78 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~ 78 (124)
||.+.+++ ++|.+-|++|....
T Consensus 117 ~Gv~a~i~-~aL~~~~InI~~is 138 (167)
T 2re1_A 117 VGVAAKIF-RTLAEEGINIQMIS 138 (167)
T ss_dssp CCHHHHHH-HHHHHTTCCCCEEE
T ss_pred cCHHHHHH-HHHHHCCCcEEEEE
Confidence 89999999 99999999998854
No 43
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0
Probab=36.64 E-value=64 Score=23.09 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=33.3
Q ss_pred hHHhHHHHHHHHHHcCeeEEEEeecCCCchHHHHHHHHHHhcCCeE
Q 048653 29 IIVDASNYIEELKQKGFMINLFSKKSCPGLLVSILGSAFEELALNV 74 (124)
Q Consensus 29 Il~daI~YikeL~~~g~~v~V~~e~~c~g~L~~i~~~ale~l~L~V 74 (124)
++-.|.+-|++|+++|..|-+...+. ......+. +.++.+|+++
T Consensus 25 ~~~~~~~ai~~l~~~Gi~v~l~Tgr~-~r~~~~~~-~~l~~lg~~~ 68 (268)
T 3qgm_A 25 PIPEGVEGVKKLKELGKKIIFVSNNS-TRSRRILL-ERLRSFGLEV 68 (268)
T ss_dssp ECHHHHHHHHHHHHTTCEEEEEECCS-SSCHHHHH-HHHHHTTCCC
T ss_pred eCcCHHHHHHHHHHcCCeEEEEeCcC-CCCHHHHH-HHHHHCCCCC
Confidence 45679999999999998887765543 34555667 8889999974
No 44
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=31.60 E-value=24 Score=23.19 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=13.3
Q ss_pred hHHhHHHHHHHHHHc
Q 048653 29 IIVDASNYIEELKQK 43 (124)
Q Consensus 29 Il~daI~YikeL~~~ 43 (124)
-..||+.|+++++.+
T Consensus 9 ~~~~A~~YvnkVK~r 23 (89)
T 1g1e_B 9 EFNHAINYVNKIKNR 23 (89)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 467999999999988
No 45
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=28.95 E-value=22 Score=19.29 Aligned_cols=12 Identities=33% Similarity=0.553 Sum_probs=10.3
Q ss_pred HHHHhHhhHhhh
Q 048653 5 AAALHEKLQLLR 16 (124)
Q Consensus 5 R~klnerl~~LR 16 (124)
.-||-+||.+||
T Consensus 17 EDkLAqRLRALR 28 (29)
T 3ggz_E 17 EDKLAQRLRALR 28 (29)
T ss_pred hHHHHHHHHHHc
Confidence 458999999998
No 46
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=27.82 E-value=31 Score=22.42 Aligned_cols=36 Identities=19% Similarity=0.390 Sum_probs=25.2
Q ss_pred chHHhHHHHHHHHHHcCeeEEEEeecCCCc---hHHHHHHHHHHhcCC
Q 048653 28 SIIVDASNYIEELKQKGFMINLFSKKSCPG---LLVSILGSAFEELAL 72 (124)
Q Consensus 28 SIl~daI~YikeL~~~g~~v~V~~e~~c~g---~L~~i~~~ale~l~L 72 (124)
.-..||+.|+++++.+ .... |. -+++|| ..+.+-..
T Consensus 5 ~~~~~A~~yv~kVK~r-------F~~~-p~~Y~~FL~il-~~yk~~~~ 43 (85)
T 1e91_A 5 VEFNNAISYVNKIKTR-------FLDH-PEIYRSFLEIL-HTYQKEQL 43 (85)
T ss_dssp HHHHHHHHHHHHHHHH-------TSSC-HHHHHHHHHHH-HHHHHTTC
T ss_pred ccHHHHHHHHHHHHHH-------HhcC-hHHHHHHHHHH-HHHHHccc
Confidence 3467999999999988 4444 55 466777 66665544
No 47
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=25.64 E-value=1.3e+02 Score=21.43 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=34.6
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccCHHHHHHHHHHHHh
Q 048653 56 PGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETIDAHVVKQALLQVIR 115 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~ 115 (124)
||...+++ ++|.+-|++|.....| ...+-....+. +.+..-++|++++.
T Consensus 110 ~Gvaa~~f-~aLa~~~InI~~IstS---ei~Is~vV~~~-------d~~~Av~aLH~~f~ 158 (181)
T 3s1t_A 110 PGVTATFC-EALAAVGVNIELISTS---EIRISVLCRDT-------ELDKAVVALHEAFG 158 (181)
T ss_dssp HHHHHHHH-HHHHHTTCCCCEEEEE---TTEEEEEEEGG-------GHHHHHHHHHHHHT
T ss_pred chHHHHHH-HHHHHCCCcEEEEEcC---CCEEEEEEeHH-------HHHHHHHHHHHHHc
Confidence 99999999 9999999999877633 33343333332 45666778888775
No 48
>3fxt_A Nucleoside diphosphate-linked moiety X motif 6; nudix, NUDT6, GFG, FGF2AS, antisense basic fibroblast growth FGF-2 regulation, hydrolase; 2.30A {Homo sapiens}
Probab=25.60 E-value=75 Score=21.95 Aligned_cols=45 Identities=9% Similarity=0.024 Sum_probs=32.7
Q ss_pred cchHHhHHHHHHHHHHcCeeEEEEeecCCCchHHHHHHHHHHhcCCeEEEEE
Q 048653 27 TSIIVDASNYIEELKQKGFMINLFSKKSCPGLLVSILGSAFEELALNVLEAR 78 (124)
Q Consensus 27 aSIl~daI~YikeL~~~g~~v~V~~e~~c~g~L~~i~~~ale~l~L~V~~a~ 78 (124)
++.|..+|.+-++-.++|++++|-++.. - .+ ..+-+.|+..++|.
T Consensus 54 ~~~L~~SL~~Wr~~gk~~IWlklpi~~s---~---lI-p~a~~~GF~fHHAe 98 (113)
T 3fxt_A 54 QKGLQAAVQQWRSEGRTAVWLHIPILQS---R---FI-APAASLGFCFHHAE 98 (113)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEGGGG---G---GH-HHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHcCCeeEEEEcCHHHh---h---hH-HHHHHcCceeecCC
Confidence 4556677777777767789999866555 3 34 55579999999886
No 49
>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3
Probab=25.53 E-value=59 Score=21.39 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=20.5
Q ss_pred ecCCCchHHHHHHHHHHhcCC-eEEEEEee
Q 048653 52 KKSCPGLLVSILGSAFEELAL-NVLEARVS 80 (124)
Q Consensus 52 e~~c~g~L~~i~~~ale~l~L-~V~~a~vS 80 (124)
...||..++.+. .||++|.- +++.+-++
T Consensus 33 Gl~CP~Pvl~tk-kaL~~l~~Ge~L~Vl~d 61 (98)
T 1jdq_A 33 GEVCPVPDVETK-RALQNMKPGEILEVWID 61 (98)
T ss_dssp SCCSSHHHHHHH-HHHHTCCTTCEEEEEES
T ss_pred CCCCCHHHHHHH-HHHHhCCCCCEEEEEEC
Confidence 556899999999 99999854 45555444
No 50
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=24.94 E-value=2.5e+02 Score=21.89 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=37.4
Q ss_pred EeecCCCchHHHHHHHHHHhcCCeEEEEEeeecCc------eEEEEeeccccCCCCccCHHHHHHHHHHHHh
Q 048653 50 FSKKSCPGLLVSILGSAFEELALNVLEARVSCTDT------FSLQAIGGKNEEQGETIDAHVVKQALLQVIR 115 (124)
Q Consensus 50 ~~e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~------f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~ 115 (124)
....+ ||.|.++| ..|...|++...-.+-...+ |-++.. ...+-..+++||...-.
T Consensus 206 ~~~~~-pGaL~~~L-~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e--------g~~~d~~v~~aL~~L~~ 267 (283)
T 2qmx_A 206 ALPNE-QGSLFRAL-ATFALRGIDLTKIESRPSRKKAFEYLFYADFI--------GHREDQNVHNALENLRE 267 (283)
T ss_dssp EEECC-TTHHHHHH-HHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE--------SCTTSHHHHHHHHHHHT
T ss_pred EcCCC-CchHHHHH-HHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe--------cCCCcHHHHHHHHHHHH
Confidence 34566 99999999 99999999998777665542 333331 12333567777765533
No 51
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=24.14 E-value=73 Score=22.22 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=25.6
Q ss_pred eEEEE-eecCCCchHHHHHHHHHHhcCCeEEEEEe
Q 048653 46 MINLF-SKKSCPGLLVSILGSAFEELALNVLEARV 79 (124)
Q Consensus 46 ~v~V~-~e~~c~g~L~~i~~~ale~l~L~V~~a~v 79 (124)
.|.|. .+.+ ||.+.+++ ++|.+.|++|.....
T Consensus 27 ~i~v~~~~~~-~G~~~~if-~~La~~~Invd~i~~ 59 (167)
T 2re1_A 27 RINVRGVPDK-PGVAYQIL-GAVADANIEVDMIIQ 59 (167)
T ss_dssp EEEEEEEECC-TTHHHHHH-HHHHTTTCCCCCEEE
T ss_pred EEEEecCCCC-cCHHHHHH-HHHHHcCCeEEEEEc
Confidence 45666 4677 99999999 999999999876543
No 52
>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A
Probab=23.17 E-value=1.1e+02 Score=23.05 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=34.4
Q ss_pred cchHHhHHHHHHHHHHcCeeEEEEeecCCCchHHHHHHHHHHhcCCe
Q 048653 27 TSIIVDASNYIEELKQKGFMINLFSKKSCPGLLVSILGSAFEELALN 73 (124)
Q Consensus 27 aSIl~daI~YikeL~~~g~~v~V~~e~~c~g~L~~i~~~ale~l~L~ 73 (124)
..++-++.+.|+.|+++|+.+=|...+. ......+. ..|+.+|+.
T Consensus 100 ~~~~pg~~e~L~~L~~~Gi~i~iaTnr~-~~~~~~~~-~~L~~~Gl~ 144 (258)
T 2i33_A 100 AEALPGSIDFLKYTESKGVDIYYISNRK-TNQLDATI-KNLERVGAP 144 (258)
T ss_dssp CEECTTHHHHHHHHHHTTCEEEEEEEEE-GGGHHHHH-HHHHHHTCS
T ss_pred CCcCccHHHHHHHHHHCCCEEEEEcCCc-hhHHHHHH-HHHHHcCCC
Confidence 5567789999999999998887766655 44455566 778888987
No 53
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=23.08 E-value=43 Score=21.24 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=20.7
Q ss_pred HHhHHHHHHHHHHcCeeEEEEeecCCCc---hHHHHHHHHHHh
Q 048653 30 IVDASNYIEELKQKGFMINLFSKKSCPG---LLVSILGSAFEE 69 (124)
Q Consensus 30 l~daI~YikeL~~~g~~v~V~~e~~c~g---~L~~i~~~ale~ 69 (124)
+.||+.|++..+.+ .... |+ -+++|| ..+.+
T Consensus 4 ~~dA~~yl~~VK~~-------F~~~-p~~Y~~FL~im-~~~k~ 37 (77)
T 2czy_A 4 VEDALTYLDQVKIR-------FGSD-PATYNGFLEIM-KEFKS 37 (77)
T ss_dssp HHHHHHHHHHHHHH-------TTTC-HHHHHHHHHHH-HHHHT
T ss_pred HHHHHHHHHHHHHH-------HccC-hHHHHHHHHHH-HHHHH
Confidence 56999999999988 3333 44 355555 55543
No 54
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*
Probab=22.89 E-value=1.3e+02 Score=21.43 Aligned_cols=45 Identities=16% Similarity=0.321 Sum_probs=32.3
Q ss_pred cchHHhHHHHHHHHHHcCeeEEEEeecCCCc-hHHHHHHHHHHhcCCeE
Q 048653 27 TSIIVDASNYIEELKQKGFMINLFSKKSCPG-LLVSILGSAFEELALNV 74 (124)
Q Consensus 27 aSIl~daI~YikeL~~~g~~v~V~~e~~c~g-~L~~i~~~ale~l~L~V 74 (124)
..+.-.+++.|++|+++|+.+-+. ..+ +| ....+. +.|+.+|+++
T Consensus 32 ~~~~~~~~~~l~~l~~~G~~~~~a-Tn~-~gr~~~~~~-~~~~~lg~~~ 77 (271)
T 1vjr_A 32 DSLLPGSLEFLETLKEKNKRFVFF-TNN-SSLGAQDYV-RKLRNMGVDV 77 (271)
T ss_dssp TEECTTHHHHHHHHHHTTCEEEEE-ESC-TTSCHHHHH-HHHHHTTCCC
T ss_pred CEECcCHHHHHHHHHHcCCeEEEE-ECC-CCCCHHHHH-HHHHHcCCCC
Confidence 346677899999999999877554 433 33 455666 7888999864
No 55
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A
Probab=22.75 E-value=1.4e+02 Score=21.30 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=31.2
Q ss_pred HhHHHHHHHHHHcCeeEEEEeecCCCchHHHHHHHHHHhcCCeE
Q 048653 31 VDASNYIEELKQKGFMINLFSKKSCPGLLVSILGSAFEELALNV 74 (124)
Q Consensus 31 ~daI~YikeL~~~g~~v~V~~e~~c~g~L~~i~~~ale~l~L~V 74 (124)
-.|.+-|++|+++|..|-+..... ......+. ..++.+|+++
T Consensus 24 ~~~~eal~~l~~~G~~vvl~Tn~~-gr~~~~~~-~~l~~lg~~~ 65 (264)
T 3epr_A 24 PAGERFIERLQEKGIPYMLVTNNT-TRTPESVQ-EMLRGFNVET 65 (264)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCC-SSCHHHHH-HHHHTTTCCC
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCC-CCCHHHHH-HHHHHCCCCC
Confidence 689999999999998875544332 33455666 8889999975
No 56
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=22.54 E-value=43 Score=22.76 Aligned_cols=14 Identities=21% Similarity=0.577 Sum_probs=12.8
Q ss_pred HHhHHHHHHHHHHc
Q 048653 30 IVDASNYIEELKQK 43 (124)
Q Consensus 30 l~daI~YikeL~~~ 43 (124)
..||+.|+++++.+
T Consensus 7 ~~dA~~YvnkVK~r 20 (105)
T 2f05_A 7 FNNAISYVNKIKTR 20 (105)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57999999999988
No 57
>1pav_A Hypothetical protein TA1170/TA1414; structural genomics, structure, fast NMR, semiautomated analysis; NMR {Thermoplasma acidophilum} SCOP: d.68.3.3
Probab=22.43 E-value=45 Score=20.52 Aligned_cols=27 Identities=22% Similarity=0.583 Sum_probs=19.5
Q ss_pred ecCCCchHHHHHHHHHHhcCC-eEEEEEe
Q 048653 52 KKSCPGLLVSILGSAFEELAL-NVLEARV 79 (124)
Q Consensus 52 e~~c~g~L~~i~~~ale~l~L-~V~~a~v 79 (124)
...||..++.+. .||+++.- +++.+-+
T Consensus 13 Gl~CP~Pvl~~k-~al~~l~~G~~L~V~~ 40 (78)
T 1pav_A 13 GSYCPGPLMELI-KAYKQAKVGEVISVYS 40 (78)
T ss_dssp SCSSCTTHHHHH-HHHTTSCTTCCEECCB
T ss_pred CCCCCHHHHHHH-HHHHcCCCCCEEEEEE
Confidence 345899999999 99999843 3444433
No 58
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=21.36 E-value=2.9e+02 Score=21.35 Aligned_cols=54 Identities=24% Similarity=0.299 Sum_probs=37.1
Q ss_pred ecCCCchHHHHHHHHHHhcCCeEEEEEeeecCc------eEEEEeeccccCCCCccCHHHHHHHHHHHHhc
Q 048653 52 KKSCPGLLVSILGSAFEELALNVLEARVSCTDT------FSLQAIGGKNEEQGETIDAHVVKQALLQVIRN 116 (124)
Q Consensus 52 e~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~------f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~~ 116 (124)
..+ ||.|.++| +.|...|++...-.+-...+ |-++. . ..+-..+++||...-..
T Consensus 197 ~~~-pGaL~~~L-~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~--------e-~~~d~~v~~aL~~L~~~ 256 (267)
T 2qmw_A 197 HDK-PGLLASVL-NTFALFNINLSWIESRPLKTQLGMYRFFVQA--------D-SAITTDIKKVIAILETL 256 (267)
T ss_dssp SCC-TTHHHHHH-HHHHTTTCCEEEEEEEECSSSTTCEEEEEEE--------S-CCSCHHHHHHHHHHHHT
T ss_pred CCC-cChHHHHH-HHHHHcCCCeeEEEEeecCCCCccEEEEEEE--------e-cCCcHHHHHHHHHHHHh
Confidence 567 99999999 99999999998776655532 34443 1 23335677777665433
No 59
>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}
Probab=20.92 E-value=73 Score=20.40 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=12.5
Q ss_pred cCCCchHHHHHHHHHHhc
Q 048653 53 KSCPGLLVSILGSAFEEL 70 (124)
Q Consensus 53 ~~c~g~L~~i~~~ale~l 70 (124)
..||+.++.+. .||+++
T Consensus 9 l~CP~Pvl~~k-kal~~l 25 (87)
T 3hz7_A 9 QVCPIPVIRAK-KALAEL 25 (87)
T ss_dssp CCTTHHHHHHH-HHHHTT
T ss_pred CCCCHHHHHHH-HHHHhc
Confidence 44777777777 777776
No 60
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=20.81 E-value=3.2e+02 Score=21.75 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=38.0
Q ss_pred cCCCchHHHHHHHHHHhcCCeEEEEEeeecCceE-EEEeeccccCCCCccCHHHHHHHHHHHHhc
Q 048653 53 KSCPGLLVSILGSAFEELALNVLEARVSCTDTFS-LQAIGGKNEEQGETIDAHVVKQALLQVIRN 116 (124)
Q Consensus 53 ~~c~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~-l~a~~~~~~~~~~~~s~~~ik~aL~~ai~~ 116 (124)
.+ ||.|.++| ..|...|++...-.+-...+-. =..+.... ....+-..+++||...-..
T Consensus 217 ~~-pGaL~~~L-~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~---eg~~~d~~v~~AL~~L~~~ 276 (329)
T 3luy_A 217 TG-PGVLANLL-DVFRDAGLNMTSFISRPIKGRTGTYSFIVTL---DAAPWEERFRDALVEIAEH 276 (329)
T ss_dssp CS-TTHHHHHH-HHHHHTTCCEEEEEEEEETTEEEEEEEEEEE---SSCTTSHHHHHHHHHHHHT
T ss_pred CC-CCHHHHHH-HHHHHCCcceEEEEeeECCCCCccEEEEEEE---eCCcCCHHHHHHHHHHHHh
Confidence 36 99999999 9999999998877666554321 12222332 1234445778887765443
No 61
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=20.49 E-value=1.4e+02 Score=21.00 Aligned_cols=50 Identities=14% Similarity=0.284 Sum_probs=33.2
Q ss_pred CchHHHHHHHHHHhcCCeEEEEEeeecCceEEEEeeccccCCCCccCHHHHHHHHHHHHhc
Q 048653 56 PGLLVSILGSAFEELALNVLEARVSCTDTFSLQAIGGKNEEQGETIDAHVVKQALLQVIRN 116 (124)
Q Consensus 56 ~g~L~~i~~~ale~l~L~V~~a~vS~~~~f~l~a~~~~~~~~~~~~s~~~ik~aL~~ai~~ 116 (124)
||.+.+++ ++|.+-|++|..... .+ ..+-....+ -+.+...++|++++..
T Consensus 109 ~Gv~arif-~aLa~~~InI~~ist--Se-~~Is~vV~~-------~d~~~Av~~Lh~~F~l 158 (178)
T 2dtj_A 109 PGVTAEFM-EALRDVNVNIELIST--SE-IRISVLIRE-------DDLDAAARALHEQFQL 158 (178)
T ss_dssp HHHHHHHH-HHHHHTTCCCCEEEE--ET-TEEEEEEEG-------GGHHHHHHHHHHHHTC
T ss_pred ccHHHHHH-HHHHHCCCCEEEEEc--CC-CeEEEEEeH-------HHHHHHHHHHHHHHcc
Confidence 89999999 999999999987542 22 222221211 2556677788887753
No 62
>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}
Probab=20.44 E-value=2e+02 Score=19.54 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=31.9
Q ss_pred cccchHHhHHHHHHHHHHcCeeEEEEeecCCCchHHHHHHHHHHhcCCe
Q 048653 25 SKTSIIVDASNYIEELKQKGFMINLFSKKSCPGLLVSILGSAFEELALN 73 (124)
Q Consensus 25 dKaSIl~daI~YikeL~~~g~~v~V~~e~~c~g~L~~i~~~ale~l~L~ 73 (124)
+.....-++.+.++.|+++|+.+=|..... ...--.+. ..++.+|+.
T Consensus 31 ~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~-~~~~~~~~-~~l~~~gl~ 77 (189)
T 3ib6_A 31 PEVVLRKNAKETLEKVKQLGFKQAILSNTA-TSDTEVIK-RVLTNFGII 77 (189)
T ss_dssp TTCCBCTTHHHHHHHHHHTTCEEEEEECCS-SCCHHHHH-HHHHHTTCG
T ss_pred CCceeCcCHHHHHHHHHHCCCEEEEEECCC-ccchHHHH-HHHHhcCch
Confidence 345677889999999999998887766544 21112233 566888874
No 63
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=20.39 E-value=2.2e+02 Score=22.36 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=34.0
Q ss_pred hHHhHHHHHHHHHHcCeeEEEEeecCC-------CchHHHHHHHHHHhcCCeE
Q 048653 29 IIVDASNYIEELKQKGFMINLFSKKSC-------PGLLVSILGSAFEELALNV 74 (124)
Q Consensus 29 Il~daI~YikeL~~~g~~v~V~~e~~c-------~g~L~~i~~~ale~l~L~V 74 (124)
.+..+.+.++..++.|..|.+.++. | +..++++. +++.++|.+.
T Consensus 135 ~l~~~~~~v~~ak~~G~~v~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~Ga~~ 185 (337)
T 3ble_A 135 FFTDVSFVIEYAIKSGLKINVYLED-WSNGFRNSPDYVKSLV-EHLSKEHIER 185 (337)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEET-HHHHHHHCHHHHHHHH-HHHHTSCCSE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEE-CCCCCcCCHHHHHHHH-HHHHHcCCCE
Confidence 4556667777777789888888876 3 56888999 9999999763
No 64
>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A
Probab=20.33 E-value=98 Score=19.31 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=19.3
Q ss_pred ecCCCchHHHHHHHHHHhcCC-eEEEEEee
Q 048653 52 KKSCPGLLVSILGSAFEELAL-NVLEARVS 80 (124)
Q Consensus 52 e~~c~g~L~~i~~~ale~l~L-~V~~a~vS 80 (124)
...||..++.+. .||+++.- +++.+-++
T Consensus 17 Gl~CP~Pvl~~k-kal~~l~~G~~l~V~~d 45 (82)
T 3lvj_C 17 GLRCPEPVMMVR-KTVRNMQPGETLLIIAD 45 (82)
T ss_dssp TCCTTHHHHHHH-HHHHTSCTTCEEEEEEC
T ss_pred CCCCCHHHHHHH-HHHHhCCCCCEEEEEEC
Confidence 345899999999 99998842 44444433
No 65
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=20.18 E-value=56 Score=25.03 Aligned_cols=39 Identities=18% Similarity=0.323 Sum_probs=24.6
Q ss_pred HHHHhHhhHhhhhcCCCCCccccchHHhHHHHHHHHHHc
Q 048653 5 AAALHEKLQLLRSITNSHALSKTSIIVDASNYIEELKQK 43 (124)
Q Consensus 5 R~klnerl~~LRslvP~sk~dKaSIl~daI~YikeL~~~ 43 (124)
|.-++.=...||-++...=-.--.++.|||+|++.|-.-
T Consensus 53 ~~Dl~~F~~QL~qL~~~~i~~Tre~v~d~l~YLkkLD~l 91 (204)
T 2jqq_A 53 QSDLQKFMTQLDHLIKDDISNTQEIIKDVLEYLKKLDEI 91 (204)
T ss_dssp HHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 334444455566665522223356889999999999876
Done!