BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048654
(723 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 116/420 (27%), Positives = 176/420 (41%), Gaps = 106/420 (25%)
Query: 171 FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKI---PVPKNIDVLLV 227
FS+A K LL T +R+ +RYG+ GPNG GKSTL++ +A ++ P + + V
Sbjct: 441 FSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYV 500
Query: 228 EQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEK 287
E ++ G + TSV L ++E
Sbjct: 501 EHDIDGT-------------------------HSDTSV---------------LDFVFES 520
Query: 288 LQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEP 347
G EA K++ GFT EM P + SGGW+M+++LARA+ +LLLDEP
Sbjct: 521 ----GVGTKEAIKDKLIE-FGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEP 575
Query: 348 TNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTV-CTEIIHLHDQKLHFYRGNFDDFE 406
TNHLD V WL Y LNT T I HD + N ++
Sbjct: 576 TNHLDTVNVAWLVNY-----------------LNTCGITSITISHDS---VFLDNVCEYI 615
Query: 407 SGYEQRR-KEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRXXXXXXXXXXXXXXXXXVDE 465
YE + ++ F + K+ AAK E++ + D
Sbjct: 616 INYEGLKLRKYKGNFTEFVKKCPAAK------AYEELSN------------------TDL 651
Query: 466 DEPLPEAPKKWRDYSVEFHFXXXXXXXXXXXXXIEVSFSYPNREDFKLSDVDVGIDMGTR 525
+ PE + + F YP +++D++ + +R
Sbjct: 652 EFKFPEPG----------YLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSR 701
Query: 526 VAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQH-FVDLLT-MEETPVSYL 583
+A++GPNGAGKSTL+N+L G+L PT GEV + RI QH F + + +++TP Y+
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYI 761
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 91/188 (48%), Gaps = 20/188 (10%)
Query: 525 RVAIVGPNGAGKSTLLNLLAG---DLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVS 581
R I GPNG GKSTL+ +A D PT+ E R Y +H +D + + +
Sbjct: 463 RYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTV-------YVEHDIDGTHSDTSVLD 515
Query: 582 YLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHIL 641
++ + G+ +EA++ KL +FG PI+ LSGG K ++ + IL
Sbjct: 516 FVF-----ESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADIL 570
Query: 642 LLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701
LLDEPTNHLD ++ L + L+ + +SHDS + VC+ I E + +
Sbjct: 571 LLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCE-----YIINYEGLKLRK 625
Query: 702 FPGTFEEY 709
+ G F E+
Sbjct: 626 YKGNFTEF 633
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 56/84 (66%), Gaps = 5/84 (5%)
Query: 617 IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDS 676
I LSGGQK ++V + + +PH+++LDEPTN+LD S+ AL+ AL EF GGV++++H +
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 958
Query: 677 RLISRVCDDEERSEIWVVENGTVS 700
+ + E+W V++G ++
Sbjct: 959 EFTKNLTE-----EVWAVKDGRMT 977
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 47/77 (61%)
Query: 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRD 378
+ SGG ++++ LA + +P L++LDEPTN+LD ++ L + L ++ +++++H +
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAE 959
Query: 379 FLNTVCTEIIHLHDQKL 395
F + E+ + D ++
Sbjct: 960 FTKNLTEEVWAVKDGRM 976
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 153 LEGQDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
LEG + +T F K + + + S R ++GPNG GKSTL+ +L
Sbjct: 661 LEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLT 720
Query: 213 WRKIP 217
+P
Sbjct: 721 GELLP 725
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 111/238 (46%), Gaps = 48/238 (20%)
Query: 171 FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKI---PVPKNIDVLLV 227
FS+A K LL T +R+ +RYG+ GPNG GKSTL + +A ++ P + + V
Sbjct: 435 FSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYV 494
Query: 228 EQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEK 287
E ++ G + TSV L ++E
Sbjct: 495 EHDIDGT-------------------------HSDTSV---------------LDFVFES 514
Query: 288 LQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEP 347
G EA K++ GFT E P + SGGW+ +++LARA+ +LLLDEP
Sbjct: 515 ----GVGTKEAIKDKLIE-FGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEP 569
Query: 348 TNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDF 405
TNHLD V WL YL T + +SHD FL+ VC II+ KL Y+GNF +F
Sbjct: 570 TNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 627
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 20/188 (10%)
Query: 525 RVAIVGPNGAGKSTLLNLLAG---DLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVS 581
R I GPNG GKSTL +A D PT+ E R Y +H +D + + +
Sbjct: 457 RYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTV-------YVEHDIDGTHSDTSVLD 509
Query: 582 YLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHIL 641
++ + G+ +EA++ KL +FG PI+ LSGG K ++ + IL
Sbjct: 510 FVF-----ESGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADIL 564
Query: 642 LLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701
LLDEPTNHLD ++ L + L+ + +SHDS + VC+ I E + +
Sbjct: 565 LLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCE-----YIINYEGLKLRK 619
Query: 702 FPGTFEEY 709
+ G F E+
Sbjct: 620 YKGNFTEF 627
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 54/81 (66%), Gaps = 5/81 (6%)
Query: 617 IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDS 676
I LSGGQK ++V + + +PH+++LDEPTN+LD S+ AL+ AL EF GGV++++H +
Sbjct: 893 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 952
Query: 677 RLISRVCDDEERSEIWVVENG 697
+ + E+W V++G
Sbjct: 953 EFTKNLTE-----EVWAVKDG 968
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 503 FSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRI 562
F YP +++D++ + +R+A++GPNGAGKSTL+N+L G+L PT GEV + RI
Sbjct: 673 FQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRI 732
Query: 563 GRYSQH-FVDLLT-MEETPVSYL 583
QH F + + +++TP Y+
Sbjct: 733 AYIKQHAFAHIESHLDKTPSEYI 755
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 46/76 (60%)
Query: 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRD 378
+ SGG ++++ LA + +P L++LDEPTN+LD ++ L + L ++ +++++H +
Sbjct: 894 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAE 953
Query: 379 FLNTVCTEIIHLHDQK 394
F + E+ + D +
Sbjct: 954 FTKNLTEEVWAVKDGR 969
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 153 LEGQDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
LEG + +T F K + + + S R ++GPNG GKSTL+ +L
Sbjct: 655 LEGVKTKQKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLT 714
Query: 213 WRKIP 217
+P
Sbjct: 715 GELLP 719
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 111/238 (46%), Gaps = 48/238 (20%)
Query: 171 FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKI---PVPKNIDVLLV 227
FS+A K LL T +R+ +RYG+ GPNG GKSTL + +A ++ P + + V
Sbjct: 441 FSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTVYV 500
Query: 228 EQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEK 287
E ++ G + TSV L ++E
Sbjct: 501 EHDIDGT-------------------------HSDTSV---------------LDFVFES 520
Query: 288 LQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEP 347
G EA K++ GFT E P + SGGW+ +++LARA+ +LLLDEP
Sbjct: 521 ----GVGTKEAIKDKLIE-FGFTDEXIAXPISALSGGWKXKLALARAVLRNADILLLDEP 575
Query: 348 TNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDF 405
TNHLD V WL YL T + +SHD FL+ VC II+ KL Y+GNF +F
Sbjct: 576 TNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 20/188 (10%)
Query: 525 RVAIVGPNGAGKSTLLNLLAG---DLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVS 581
R I GPNG GKSTL +A D PT+ E R Y +H +D + + +
Sbjct: 463 RYGICGPNGCGKSTLXRAIANGQVDGFPTQEECRTV-------YVEHDIDGTHSDTSVLD 515
Query: 582 YLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHIL 641
++ + G+ +EA++ KL +FG PI+ LSGG K ++ + IL
Sbjct: 516 FVF-----ESGVGTKEAIKDKLIEFGFTDEXIAXPISALSGGWKXKLALARAVLRNADIL 570
Query: 642 LLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701
LLDEPTNHLD ++ L + L+ + +SHDS + VC+ I E + +
Sbjct: 571 LLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCE-----YIINYEGLKLRK 625
Query: 702 FPGTFEEY 709
+ G F E+
Sbjct: 626 YKGNFTEF 633
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 54/81 (66%), Gaps = 5/81 (6%)
Query: 617 IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDS 676
I LSGGQK ++V + + +PH+++LDEPTN+LD S+ AL+ AL EF GGV++++H +
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSA 958
Query: 677 RLISRVCDDEERSEIWVVENG 697
+ + E+W V++G
Sbjct: 959 EFTKNLTE-----EVWAVKDG 974
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 503 FSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRI 562
F YP +++D++ + +R+A++GPNGAGKSTL+N+L G+L PT GEV + RI
Sbjct: 679 FQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRI 738
Query: 563 GRYSQH-FVDLLT-MEETPVSYL 583
QH F + + +++TP Y+
Sbjct: 739 AYIKQHAFAHIESHLDKTPSEYI 761
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 46/76 (60%)
Query: 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRD 378
+ SGG ++++ LA + +P L++LDEPTN+LD ++ L + L ++ +++++H +
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAE 959
Query: 379 FLNTVCTEIIHLHDQK 394
F + E+ + D +
Sbjct: 960 FTKNLTEEVWAVKDGR 975
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 153 LEGQDDADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
LEG + +T F K + + + S R ++GPNG GKSTL+ +L
Sbjct: 661 LEGVKTKQKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLT 720
Query: 213 WRKIP 217
+P
Sbjct: 721 GELLP 725
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 131/518 (25%), Positives = 209/518 (40%), Gaps = 112/518 (21%)
Query: 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAH- 246
+ G G+VGPNG GKST +K+LA + IP + GD+ S V+ A
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIP------------NLCGDNDSW-DGVIRAFR 90
Query: 247 -EELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQASKILA 305
EL E++ + + V K+ EL +K G + +++
Sbjct: 91 GNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETG------KLEEVVK 144
Query: 306 GLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR 365
L ++ R + SGG R+++A AL T DEP+++LD+R L + R
Sbjct: 145 ALELENVLE-REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR 203
Query: 366 WK---KTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY---------RGNFDDFESGYEQRR 413
K+++VV HD L+ + ++IIH+ + Y R ++F GY
Sbjct: 204 LSEEGKSVLVVEHDLAVLDYL-SDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGY---L 259
Query: 414 KEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRXXXXXXXXXXXXXXXXXVDEDEPLPEAP 473
K+ N +F YE +K K +G RV+ E+ E L P
Sbjct: 260 KDENVRFRPYE--IKFTK-TGERVEIER-------------------------ETLVTYP 291
Query: 474 KKWRDYSVEFHFXXXXXXXXXXXXXIEVSFSYPNREDFKLSDVDVG-IDMGTRVAIVGPN 532
+ +DY F+L +V+ G I G + IVGPN
Sbjct: 292 RLVKDYG-----------------------------SFRL-EVEPGEIKKGEVIGIVGPN 321
Query: 533 GAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQ-- 590
G GK+T + LAG PTEG++ + Y ++ E T L ++ +
Sbjct: 322 GIGKTTFVKXLAGVEEPTEGKIEWDLTV---AYKPQYIK-ADYEGTVYELLSKIDASKLN 377
Query: 591 EGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHL 650
K E ++ LG L + +LSGG+ RV + + I LLDEP+ +L
Sbjct: 378 SNFYKTELLKP-LGIIDLYDRE----VNELSGGELQRVAIAATLLRDADIYLLDEPSAYL 432
Query: 651 DMQSIDALADALDEFT----GGVVLVSHDSRLISRVCD 684
D++ A++ A+ ++V HD I V D
Sbjct: 433 DVEQRLAVSRAIRHLXEKNEKTALVVEHDVLXIDYVSD 470
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 131/520 (25%), Positives = 207/520 (39%), Gaps = 116/520 (22%)
Query: 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAH- 246
+ G G+VGPNG GK+T +K+LA + IP + +D + V+ A
Sbjct: 100 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPN-------------LCEDNDSWDNVIRAFR 146
Query: 247 -EELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQASKILA 305
EL E + + + V K+ EL +K+ +G + +
Sbjct: 147 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELE--- 203
Query: 306 GLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR 365
+ + R SGG R+++A AL + DEP+++LD+R L + + R
Sbjct: 204 ----LENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 259
Query: 366 WK---KTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY---------RGNFDDFESGYEQRR 413
K ++VV HD L+ + +++IH+ + Y R ++F GY
Sbjct: 260 LANEGKAVLVVEHDLAVLDYL-SDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGY---L 315
Query: 414 KEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRXXXXXXXXXXXXXXXXXVDEDEPLPEAP 473
K+ N +F YE ++ K S RV E+ E L E P
Sbjct: 316 KDENVRFRPYE--IRFTKLS-ERVDVER-------------------------ETLVEYP 347
Query: 474 KKWRDYSVEFHFXXXXXXXXXXXXXIEVSFSYPNREDFKLSDVDVG-IDMGTRVAIVGPN 532
+ +DY FKL +V+ G I G + IVGPN
Sbjct: 348 RLVKDYG-----------------------------SFKL-EVEPGEIRKGEVIGIVGPN 377
Query: 533 GAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEG 592
G GK+T + +LAG PTEG+V L + Q+ + E Y L D
Sbjct: 378 GIGKTTFVKMLAGVEEPTEGKV--EWDLTVAYKPQY----IKAEYEGTVYELLSKIDSSK 431
Query: 593 LS----KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTN 648
L+ K E ++ LG L N + LSGG+ RV + + I LLDEP+
Sbjct: 432 LNSNFYKTELLKP-LGIIDLYDRN----VEDLSGGELQRVAIAATLLRDADIYLLDEPSA 486
Query: 649 HLDMQSIDALADALDEFT----GGVVLVSHDSRLISRVCD 684
+LD++ A++ A+ ++V HD +I V D
Sbjct: 487 YLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 526
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 54/210 (25%)
Query: 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHE 247
I G+ G+VGPNG+GK+T +K+LA + P ++ L V+
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT---------------VAYKP 409
Query: 248 ELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQASK--ILA 305
+ +K E +YE L + S + K +L
Sbjct: 410 QYIKAEYE--------------------------GTVYELLSKIDSSKLNSNFYKTELLK 443
Query: 306 GLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL-------RAVLW 358
LG ++ R + SGG R+++A L + LLDEP+ +LD+ RA+
Sbjct: 444 PLGII-DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 502
Query: 359 LEEYLCRWKKTLVVVSHDRDFLNTVCTEII 388
L E + +KT +VV HD ++ V +I
Sbjct: 503 LME---KNEKTALVVEHDVLMIDYVSDRLI 529
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 131/520 (25%), Positives = 207/520 (39%), Gaps = 116/520 (22%)
Query: 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAH- 246
+ G G+VGPNG GK+T +K+LA + IP + +D + V+ A
Sbjct: 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPN-------------LCEDNDSWDNVIRAFR 160
Query: 247 -EELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQASKILA 305
EL E + + + V K+ EL +K+ +G + +
Sbjct: 161 GNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELE--- 217
Query: 306 GLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR 365
+ + R SGG R+++A AL + DEP+++LD+R L + + R
Sbjct: 218 ----LENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273
Query: 366 WK---KTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY---------RGNFDDFESGYEQRR 413
K ++VV HD L+ + +++IH+ + Y R ++F GY
Sbjct: 274 LANEGKAVLVVEHDLAVLDYL-SDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGY---L 329
Query: 414 KEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRXXXXXXXXXXXXXXXXXVDEDEPLPEAP 473
K+ N +F YE ++ K S RV E+ E L E P
Sbjct: 330 KDENVRFRPYE--IRFTKLS-ERVDVER-------------------------ETLVEYP 361
Query: 474 KKWRDYSVEFHFXXXXXXXXXXXXXIEVSFSYPNREDFKLSDVDVG-IDMGTRVAIVGPN 532
+ +DY FKL +V+ G I G + IVGPN
Sbjct: 362 RLVKDYG-----------------------------SFKL-EVEPGEIRKGEVIGIVGPN 391
Query: 533 GAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEG 592
G GK+T + +LAG PTEG+V L + Q+ + E Y L D
Sbjct: 392 GIGKTTFVKMLAGVEEPTEGKV--EWDLTVAYKPQY----IKAEYEGTVYELLSKIDSSK 445
Query: 593 LS----KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTN 648
L+ K E ++ LG L N + LSGG+ RV + + I LLDEP+
Sbjct: 446 LNSNFYKTELLKP-LGIIDLYDRN----VEDLSGGELQRVAIAATLLRDADIYLLDEPSA 500
Query: 649 HLDMQSIDALADALDEFT----GGVVLVSHDSRLISRVCD 684
+LD++ A++ A+ ++V HD +I V D
Sbjct: 501 YLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD 540
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 54/210 (25%)
Query: 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHE 247
I G+ G+VGPNG+GK+T +K+LA + P ++ L V+
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLT---------------VAYKP 423
Query: 248 ELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQASK--ILA 305
+ +K E +YE L + S + K +L
Sbjct: 424 QYIKAEYE--------------------------GTVYELLSKIDSSKLNSNFYKTELLK 457
Query: 306 GLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL-------RAVLW 358
LG ++ R + SGG R+++A L + LLDEP+ +LD+ RA+
Sbjct: 458 PLGII-DLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRH 516
Query: 359 LEEYLCRWKKTLVVVSHDRDFLNTVCTEII 388
L E + +KT +VV HD ++ V +I
Sbjct: 517 LME---KNEKTALVVEHDVLMIDYVSDRLI 543
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 104/220 (47%), Gaps = 30/220 (13%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV----- 554
VSF Y + E L D+++ I+ G VA VG +G GKSTL+NL+ T G++
Sbjct: 344 HVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGH 403
Query: 555 ------RRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHP---DQEGLSKQEAVRAKLGK 605
S + +IG Q D + +T +L P D+E + + A
Sbjct: 404 NIKDFLTGSLRNQIGLVQQ---DNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFI 460
Query: 606 FGLPSHNHLTPI----AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADA 661
LP + T + KLSGGQK R+ I ++ P IL+LDE T+ LD++S + +A
Sbjct: 461 MNLP-QGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 519
Query: 662 LDEFTG--GVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
LD + ++V+H R+ +I V+ENG +
Sbjct: 520 LDVLSKDRTTLIVAH------RLSTITHADKIVVIENGHI 553
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 45/225 (20%)
Query: 166 ITIDNFSVAARGKE--LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID 223
I ID+ S E +LK ++ I G+ VG +G GKSTL+ L +P+ D
Sbjct: 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINL-------IPRFYD 392
Query: 224 V----LLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQN-----STSVXXXXXXXXX 274
V +L++ + D + LR ++ +Q S +V
Sbjct: 393 VTSGQILIDGHNIKDFLTG------------SLRNQIGLVQQDNILFSDTVKENILLGRP 440
Query: 275 XXXXXKLAELYEKLQILGSDAAEAQASKILAGL--GFTKEMQGRPTKSFSGGWRMRISLA 332
++ E A A A + L G+ E+ R K SGG + R+S+A
Sbjct: 441 TATDEEVVE----------AAKMANAHDFIMNLPQGYDTEVGERGVK-LSGGQKQRLSIA 489
Query: 333 RALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSH 375
R P +L+LDE T+ LDL + ++E L K T ++V+H
Sbjct: 490 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAH 534
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 26/189 (13%)
Query: 511 FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV---------------R 555
+ L +V++ I G V+I+GP+G+GKST+LN++ PTEGEV
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT 78
Query: 556 RSQKLRIGRYSQHF--VDLLTMEET---PVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS 610
+ ++ +IG Q F + LLT E P+ + R E K+ K+ +
Sbjct: 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF 138
Query: 611 HNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS---IDALADALDEFTG 667
NH P +LSGGQ+ RV + P I+L D+PT LD ++ I L L+E G
Sbjct: 139 ANH-KP-NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDG 196
Query: 668 -GVVLVSHD 675
VV+V+HD
Sbjct: 197 KTVVVVTHD 205
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
LK+ ++ I G+ ++GP+G GKST+L ++ P + + ++ + DD
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDD----- 75
Query: 241 AVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQA 300
EL K+R ++ + EL + G+ + E +
Sbjct: 76 -------ELTKIR------RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERR 122
Query: 301 SKILAGLGFTKEMQGR----PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAV 356
+ L L E++ R SGG + R+++ARAL P ++L D+PT LD +
Sbjct: 123 KRALECLKMA-ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 357 LWLEEYLCRWK----KTLVVVSHDRDFLNTVCTEIIHLHD 392
+ + L + KT+VVV+HD + + II+L D
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDIN-VARFGERIIYLKD 220
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 90/189 (47%), Gaps = 26/189 (13%)
Query: 511 FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV---------------R 555
+ L +V++ I G V+I GP+G+GKST LN++ PTEGEV
Sbjct: 19 YALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT 78
Query: 556 RSQKLRIGRYSQHF--VDLLTMEET---PVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS 610
+ ++ +IG Q F + LLT E P+ + R E K+ K +
Sbjct: 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERF 138
Query: 611 HNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS---IDALADALDEFTG 667
NH P +LSGGQ+ RV + P I+L DEPT LD ++ I L L+E G
Sbjct: 139 ANH-KP-NQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDG 196
Query: 668 -GVVLVSHD 675
VV+V+HD
Sbjct: 197 KTVVVVTHD 205
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 91/219 (41%), Gaps = 26/219 (11%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
LK+ ++ I G+ + GP+G GKST L ++ P + + ++ + DD
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDD----- 75
Query: 241 AVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQA 300
EL K+R ++ + EL + G+ + E +
Sbjct: 76 -------ELTKIR------RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERR 122
Query: 301 SKILAGLG---FTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVL 357
+ L L + SGG + R+++ARAL P ++L DEPT LD +
Sbjct: 123 KRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGE 182
Query: 358 WLEEYLCRWK----KTLVVVSHDRDFLNTVCTEIIHLHD 392
+ + L + KT+VVV+HD + + II+L D
Sbjct: 183 KIXQLLKKLNEEDGKTVVVVTHDIN-VARFGERIIYLKD 220
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 93/189 (49%), Gaps = 26/189 (13%)
Query: 511 FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV---------------R 555
+ L +V++ I G V+I+GP+G+GKST+LN++ PTEGEV
Sbjct: 19 YALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELT 78
Query: 556 RSQKLRIGRYSQHF--VDLLTMEET---PVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS 610
+ ++ +IG Q F + LLT E P+ + R E K+ K+ +
Sbjct: 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF 138
Query: 611 HNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS---IDALADALDEFTG 667
NH P +LSGGQ+ RV + P I+L D+PT LD ++ I L L+E G
Sbjct: 139 ANH-KP-NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG 196
Query: 668 -GVVLVSHD 675
VV+V+HD
Sbjct: 197 KTVVVVTHD 205
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
LK+ ++ I G+ ++GP+G GKST+L ++ P + + ++ + DD
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDD----- 75
Query: 241 AVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQA 300
EL K+R ++ + EL + G+ + E +
Sbjct: 76 -------ELTKIR------RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERR 122
Query: 301 SKILAGLGFTKEMQGR----PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAV 356
+ L L E++ R SGG + R+++ARAL P ++L D+PT LD +
Sbjct: 123 KRALECLKMA-ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTG 181
Query: 357 LWLEEYLCRWK----KTLVVVSHDRDFLNTVCTEIIHLHD 392
+ + L + KT+VVV+HD + + II+L D
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDIN-VARFGERIIYLKD 220
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 25/224 (11%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG----------DLSPT 550
VSF Y D+ L DV+ + G +VG NG+GK+TLL +LAG D SP
Sbjct: 17 VSFRYNG--DYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAAGEIFLDGSPA 74
Query: 551 EGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS 610
+ + R + + + T+EE L + D+ + K+ ++ L GL
Sbjct: 75 DPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKR--IKKVLELVGLSG 132
Query: 611 HNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS---IDALADALDEFTG 667
P+ LSGGQK R+ S+ L LDEP + LD S I + ++L
Sbjct: 133 LAAADPL-NLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGK 191
Query: 668 GVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711
G++LV+H+ + ++ I + NGT+ F G++EE+ E
Sbjct: 192 GIILVTHELEYL------DDMDFILHISNGTID-FCGSWEEFVE 228
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 121/289 (41%), Gaps = 44/289 (15%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I +++ S G +LK + GK Y +VG NG GK+TLLK+LA +L
Sbjct: 12 IELNSVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILA----------GLL 61
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLREEVAS-LQNSTSVXXXXXXXXXXXXXXKLAEL 284
E+ D A + LR+ V QN +S ++
Sbjct: 62 AAAGEIFLDGSPA---------DPFLLRKNVGYVFQNPSSQIIGATVEE---------DV 103
Query: 285 YEKLQILGSDAAEAQ--ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLL 342
L+I+G D +E + K+L +G + P + SGG + R+++A L L
Sbjct: 104 AFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPL-NLSGGQKQRLAIASMLARDTRFL 162
Query: 343 LLDEPTNHLD---LRAVLWLEEYLCRWKKTLVVVSH------DRDFLNTVCTEIIHLHDQ 393
LDEP + LD R + + E L K +++V+H D DF+ + I
Sbjct: 163 ALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGS 222
Query: 394 KLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKV 442
F FDD E ++ + + K ++E + + SGN+ +++ V
Sbjct: 223 WEEFVEREFDDVEIPFKWKLWKKCGKINLWEDRY---ENSGNQRRRDTV 268
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 15/224 (6%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR 236
G E+LK S++ G ++G +G GKST L+ + + + P I V +V D
Sbjct: 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77
Query: 237 SAIQAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAA 296
++ V+ +L LR + T V + E +Q+LG
Sbjct: 78 GQLK--VADKNQLRLLRTRL------TMVFQHFNLWSHMTVLENVME--APIQVLGLSKH 127
Query: 297 EA--QASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD-- 352
+A +A K LA +G + QG+ SGG + R+S+ARAL ++P +LL DEPT+ LD
Sbjct: 128 DARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187
Query: 353 -LRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
+ VL + + L KT+VVV+H+ F V + +I LH K+
Sbjct: 188 LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 568 HFVDLLTMEETPVSYLLRLHPDQEGLSKQEA---VRAKLGKFGLPSHNHLTPIAKLSGGQ 624
H L + E P+ L GLSK +A L K G+ LSGGQ
Sbjct: 107 HMTVLENVMEAPIQVL--------GLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQ 158
Query: 625 KARVVFTSISMSKPHILLLDEPTNHLDMQSIDA---LADALDEFTGGVVLVSHD 675
+ RV +P +LL DEPT+ LD + + + L E +V+V+H+
Sbjct: 159 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 23/215 (10%)
Query: 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSA 238
E+LK +V I G+ ++GP+G GKST L+ L + + D E E++ D +
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE-----DFD----EGEIIIDGIN- 66
Query: 239 IQAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEA 298
+ + L K+REEV + ++ LA + K++ + AEA
Sbjct: 67 ---LKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNIT----LAPM--KVRKWPREKAEA 117
Query: 299 QASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD---LRA 355
+A ++L +G + P S SGG R+++ARAL ++P ++L DEPT+ LD +
Sbjct: 118 KAMELLDKVGLKDKAHAYP-DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGE 176
Query: 356 VLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHL 390
VL + + L T+VVV+H+ F V ++ +
Sbjct: 177 VLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFM 211
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 80/192 (41%), Gaps = 24/192 (12%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV-----------RRSQKLR 561
L ++V I G V ++GP+G+GKST L L EGE+ K+R
Sbjct: 19 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 78
Query: 562 --IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAK----LGKFGLPSHNHLT 615
+G Q F M V + L P + +E AK L K GL H
Sbjct: 79 EEVGMVFQRFNLFPHMT---VLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY 135
Query: 616 PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTG---GVVLV 672
P LSGGQ RV +P I+L DEPT+ LD + + + + + +V+V
Sbjct: 136 P-DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVV 194
Query: 673 SHDSRLISRVCD 684
+H+ V D
Sbjct: 195 THEMGFAREVGD 206
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 23/215 (10%)
Query: 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSA 238
E+LK +V I G+ ++GP+G GKST L+ L + + D E E++ D +
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE-----DFD----EGEIIIDGIN- 87
Query: 239 IQAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEA 298
+ + L K+REEV + ++ LA + K++ + AEA
Sbjct: 88 ---LKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNIT----LAPM--KVRKWPREKAEA 138
Query: 299 QASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD---LRA 355
+A ++L +G + P S SGG R+++ARAL ++P ++L DEPT+ LD +
Sbjct: 139 KAMELLDKVGLKDKAHAYP-DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGE 197
Query: 356 VLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHL 390
VL + + L T+VVV+H+ F V ++ +
Sbjct: 198 VLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFM 232
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 80/192 (41%), Gaps = 24/192 (12%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV-----------RRSQKLR 561
L ++V I G V ++GP+G+GKST L L EGE+ K+R
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 99
Query: 562 --IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAK----LGKFGLPSHNHLT 615
+G Q F M V + L P + +E AK L K GL H
Sbjct: 100 EEVGMVFQRFNLFPHMT---VLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY 156
Query: 616 PIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTG---GVVLV 672
P LSGGQ RV +P I+L DEPT+ LD + + + + + +V+V
Sbjct: 157 P-DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVV 215
Query: 673 SHDSRLISRVCD 684
+H+ V D
Sbjct: 216 THEMGFAREVGD 227
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 113/237 (47%), Gaps = 37/237 (15%)
Query: 500 EVSFSYPNRED-FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV---- 554
+VSF+YPNR D L + + G A+VGPNG+GKST+ LL PT G++
Sbjct: 19 DVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDG 78
Query: 555 ----------RRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLG 604
Q +G+ Q F +++E ++Y L P E ++ AV++
Sbjct: 79 KPLPQYEHRYLHRQVAAVGQEPQVFGR--SLQEN-IAYGLTQKPTMEEITA-AAVKSGAH 134
Query: 605 KF--GLPSHNHLTPI----AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD----MQS 654
F GLP + T + ++LSGGQ+ V + KP +L+LD+ T+ LD +Q
Sbjct: 135 SFISGLP-QGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 193
Query: 655 IDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711
L ++ + ++ V+L++ L+ E+ I +E G + R GT ++ E
Sbjct: 194 EQLLYESPERYSRSVLLITQHLSLV------EQADHILFLEGGAI-REGGTHQQLME 243
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 26/202 (12%)
Query: 180 LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239
+L+ + + G+ LVGPNG GKST+ LL + + P +LL D +
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALL--QNLYQPTGGQLLL-------DGKPLP 82
Query: 240 QAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQ 299
Q E L +VA++ V + + E + + A ++
Sbjct: 83 Q------YEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEE----ITAAAVKSG 132
Query: 300 ASKILAGL--GFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVL 357
A ++GL G+ E+ SGG R ++LARAL +P +L+LD+ T+ LD + L
Sbjct: 133 AHSFISGLPQGYDTEVD-EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL 191
Query: 358 WLEEYLC----RWKKTLVVVSH 375
+E+ L R+ +++++++
Sbjct: 192 QVEQLLYESPERYSRSVLLITQ 213
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 107/220 (48%), Gaps = 32/220 (14%)
Query: 166 ITIDNFS-VAARGKEL-LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID 223
I + N S V +GK + L + ++ I +G+R+G++GP+G GK+T ++++A +P
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS----- 58
Query: 224 VLLVEQEVVGDDR---SAIQAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXK 280
E+ DDR S + +V + + + + +L + + K
Sbjct: 59 ----TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSK 114
Query: 281 LAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPT 340
E+ ++++ + +KIL + + SGG + R++LARAL P+
Sbjct: 115 -EEIRKRVE---------EVAKILD----IHHVLNHFPRELSGGQQQRVALARALVKDPS 160
Query: 341 LLLLDEPTNHLDLR----AVLWLEEYLCRWKKTLVVVSHD 376
LLLLDEP ++LD R A ++E R TL+VVSHD
Sbjct: 161 LLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 25/193 (12%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL------------ 560
L +V++ I+ G R I+GP+GAGK+T + ++AG P+ GE+ +L
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 561 --RIGRYSQHFVDL--LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTP 616
+IG Q + LT E L + +E + K+ AK+ L H+ L
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI----LDIHHVLNH 136
Query: 617 IAK-LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTG--GVVL-- 671
+ LSGGQ+ RV + P +LLLDEP ++LD + D+ + E GV L
Sbjct: 137 FPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV 196
Query: 672 VSHDSRLISRVCD 684
VSHD I + D
Sbjct: 197 VSHDPADIFAIAD 209
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/258 (25%), Positives = 127/258 (49%), Gaps = 35/258 (13%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237
KE+LK S I G+ +GL+GPNG GK+T L++++ + P + V + + VV ++
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIIST--LIKPSSGIVTVFGKNVV-EEPH 84
Query: 238 AIQAVVSAHEELVKLREEVASLQNSTSVXXXXXXX-XXXXXXXKLAELYEKLQILGSDAA 296
++ ++S L EE + +N + ++ E+ E+ A
Sbjct: 85 EVRKLISY------LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER-------AT 131
Query: 297 EAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL--- 353
E +AGLG ++++ R ++S G ++ +ARAL V P L +LDEPT+ LD+
Sbjct: 132 E------IAGLG--EKIKDR-VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 182
Query: 354 RAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYEQRR 413
R V + + + T++V SH+ + +C I +H+ + G ++ + Y+ +
Sbjct: 183 REVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTI-VETGTVEELKERYKAQN 241
Query: 414 KEMNKKFEIYEKQVKAAK 431
E E++E+ VK ++
Sbjct: 242 IE-----EVFEEVVKCSE 254
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 96/223 (43%), Gaps = 42/223 (18%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL 572
L + I+ G ++GPNGAGK+T L +++ + P+ G V + ++ V+
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--------VFGKNVVE- 81
Query: 573 LTMEETPVSYLLRLHPDQEGLSKQ----EAVRAKLGKFGLPSH------NHLTPIAKL-- 620
E V L+ P++ G + E +R G + S T IA L
Sbjct: 82 ---EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGE 138
Query: 621 ---------SGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGV 669
S G +++ M P + +LDEPT+ LD+ + + L + + G
Sbjct: 139 KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 670 VLV-SHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711
+LV SH+ + +CD I ++ NGT+ GT EE KE
Sbjct: 199 ILVSSHNMLEVEFLCD-----RIALIHNGTIVE-TGTVEELKE 235
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 32/220 (14%)
Query: 166 ITIDNFS-VAARGKEL-LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID 223
I + N S V +GK + L + ++ I +G+R+G++GP+G GK+T ++++A +P
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS----- 58
Query: 224 VLLVEQEVVGDDR---SAIQAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXK 280
E+ DDR S + +V + + + + +L + + K
Sbjct: 59 ----TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSK 114
Query: 281 LAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPT 340
E+ ++++ + +KIL + + SG + R++LARAL P+
Sbjct: 115 -EEIRKRVE---------EVAKILD----IHHVLNHFPRELSGAQQQRVALARALVKDPS 160
Query: 341 LLLLDEPTNHLDLR----AVLWLEEYLCRWKKTLVVVSHD 376
LLLLDEP ++LD R A ++E R TL+VVSHD
Sbjct: 161 LLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 25/193 (12%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL------------ 560
L +V++ I+ G R I+GP+GAGK+T + ++AG P+ GE+ +L
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 561 --RIGRYSQHFVDL--LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTP 616
+IG Q + LT E L + +E + K+ AK+ L H+ L
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKI----LDIHHVLNH 136
Query: 617 IAK-LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTG--GVVL-- 671
+ LSG Q+ RV + P +LLLDEP ++LD + D+ + E GV L
Sbjct: 137 FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV 196
Query: 672 VSHDSRLISRVCD 684
VSHD I + D
Sbjct: 197 VSHDPADIFAIAD 209
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 108/213 (50%), Gaps = 22/213 (10%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV------RRSQKLR--IGR 564
L +V + I+ G + + G G+GKSTLL ++AG + PT G+V ++ ++R IG
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 82
Query: 565 YSQHFVDLLTMEET--PVSYLLR-LHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLS 621
Q+ D E V++ ++ +PD++ + + +G S P LS
Sbjct: 83 AFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVG-LDFDSFKDRVPFF-LS 140
Query: 622 GGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF-TGG--VVLVSHDSRL 678
GG+K RV S+ + +P IL+LDEP LD + L ++++ T G V+L+SHD
Sbjct: 141 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD--- 197
Query: 679 ISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711
I V + +R + V+E G F GT E+ E
Sbjct: 198 IETVINHVDR--VVVLEKGK-KVFDGTRMEFLE 227
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 304 LAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYL 363
GL F + R SGG + R+++A + +P +L+LDEP LD L +
Sbjct: 123 FVGLDF-DSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 181
Query: 364 CRWK---KTLVVVSHD 376
+WK KT++++SHD
Sbjct: 182 EKWKTLGKTVILISHD 197
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 99/198 (50%), Gaps = 31/198 (15%)
Query: 501 VSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR---- 555
V F+YP+R D L +++ ++ G VA+VG +G GKST+++LL +G++
Sbjct: 421 VHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGV 480
Query: 556 --RSQKLRIGRYSQHFVDL------LTMEETPVSYLLRLHPDQEGLSKQEAVRA-KLG-- 604
R L R + V T+EE + +EG++++E V A K+
Sbjct: 481 DVRDINLEFLRKNVAVVSQEPALFNCTIEE-------NISLGKEGITREEMVAACKMANA 533
Query: 605 -KF--GLPS-HNHLTP--IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDAL 658
KF LP+ +N L +LSGGQK R+ + P ILLLDE T+ LD +S +
Sbjct: 534 EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIV 593
Query: 659 ADALDEFTGG--VVLVSH 674
ALD+ G ++++H
Sbjct: 594 QQALDKAAKGRTTIIIAH 611
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 99/221 (44%), Gaps = 31/221 (14%)
Query: 501 VSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV---RR 556
V F+YP R + + L + ++ G +A+VGP+G GKST++ LL GE+
Sbjct: 1082 VRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGS 1141
Query: 557 SQKLRIGRYSQHFVDLLTMEETPV------SYLLRLHPDQEGLSKQEAVRAKLGKFGLPS 610
K +++ + +++ E T + + L P +++ E A+L
Sbjct: 1142 EIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEA-ARLANI---- 1196
Query: 611 HNHLTPI------------AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDAL 658
HN + + +LSGGQK R+ + P ILLLDE T+ LD +S +
Sbjct: 1197 HNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVV 1256
Query: 659 ADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
+ALD G + RL + + D I VV NGT+
Sbjct: 1257 QEALDRAREGRTCIVIAHRLNTVMNAD----CIAVVSNGTI 1293
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 103/221 (46%), Gaps = 36/221 (16%)
Query: 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSA 238
E+LK S + G+ LVGP+G GKST++ LL + I + E + + + +
Sbjct: 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTR 1152
Query: 239 IQ-AVVSAHEEL--VKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDA 295
Q A+VS L + E + + +SV +A++ E ++
Sbjct: 1153 SQIAIVSQEPTLFDCSIAENIIYGLDPSSV--------------TMAQVEEAARL----- 1193
Query: 296 AEAQASKILAGL--GFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL 353
A +A L GF + R T+ SGG + RI++ARAL P +LLLDE T+ LD
Sbjct: 1194 --ANIHNFIAELPEGFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDT 1250
Query: 354 RAVLWLEEYL--CRWKKTLVVVSHDRDFLNTV----CTEII 388
+ ++E L R +T +V++H LNTV C ++
Sbjct: 1251 ESEKVVQEALDRAREGRTCIVIAHR---LNTVMNADCIAVV 1288
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 40/224 (17%)
Query: 165 DITIDN--FSVAARGK-ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKN 221
DIT++N F+ +R +L+ ++R++ G+ LVG +G GKST++ LL +
Sbjct: 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLL-------RY 467
Query: 222 IDVLLVEQEVVGDDRSAIQ--------AVVSAHEELVKLREEVASLQNSTSVXXXXXXXX 273
DVL + + G D I AVVS L +++ + S+
Sbjct: 468 YDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFN-----CTIEENISLGKEGITRE 522
Query: 274 XXXXXXKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLAR 333
K+A + ++ L + G+ + R T+ SGG + RI++AR
Sbjct: 523 EMVAACKMANAEKFIKTLPN--------------GYNTLVGDRGTQ-LSGGQKQRIAIAR 567
Query: 334 ALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSH 375
AL P +LLLDE T+ LD + +++ L + K T ++++H
Sbjct: 568 ALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAH 611
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 105/223 (47%), Gaps = 35/223 (15%)
Query: 501 VSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV----- 554
V F+YP R L + + + G +A+VG +G GKST++ LL P G V
Sbjct: 1036 VVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGK 1095
Query: 555 ----RRSQKLR--IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRA----KLG 604
Q LR +G SQ + + + ++ + + +S +E VRA +
Sbjct: 1096 EIKQLNVQWLRAQLGIVSQEPI----LFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIH 1151
Query: 605 KF--GLPSHNHLTPIA----KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDAL 658
+F LP + T + +LSGGQK R+ + +PHILLLDE T+ LD +S +
Sbjct: 1152 QFIDSLPDKYN-TRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210
Query: 659 ADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
+ALD+ G ++++H R+ + I V++NG V
Sbjct: 1211 QEALDKAREGRTCIVIAH------RLSTIQNADLIVVIQNGKV 1247
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 19/192 (9%)
Query: 501 VSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR-SQ 558
+ FSYP+R++ + L +++ + G VA+VG +G GKST + L+ P +G V Q
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQ 452
Query: 559 KLRI--GRYSQHFVDLLTME----ETPVSYLLRLHPDQEGLSKQEAVRAKLGKF----GL 608
+R RY + + +++ E T ++ +R + + + E + + L
Sbjct: 453 DIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL 512
Query: 609 PSHNHLTPI----AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE 664
P H T + A+LSGGQK R+ + P ILLLDE T+ LD +S + ALD+
Sbjct: 513 P-HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK 571
Query: 665 FTGG--VVLVSH 674
G ++++H
Sbjct: 572 AREGRTTIVIAH 583
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 33/205 (16%)
Query: 180 LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239
+L+ S+ + G+ LVG +G GKST+++LL + P V L +E+ + +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 240 QA---VVSAHEEL--VKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSD 294
+A +VS L + E +A NS V YE++
Sbjct: 1106 RAQLGIVSQEPILFDCSIAENIAYGDNSRVVS------------------YEEIV---RA 1144
Query: 295 AAEAQASKILAGL--GFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
A EA + + L + + + T+ SGG + RI++ARAL QP +LLLDE T+ LD
Sbjct: 1145 AKEANIHQFIDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALD 1203
Query: 353 LRAVLWLEEYL--CRWKKTLVVVSH 375
+ ++E L R +T +V++H
Sbjct: 1204 TESEKVVQEALDKAREGRTCIVIAH 1228
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 313 MQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYL--CRWKKTL 370
+ G SGG + RI++ARAL P +LLLDE T+ LD + ++ L R +T
Sbjct: 519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTT 578
Query: 371 VVVSHDRDFLNTV-CTEIIHLHDQKLHFYRGNFDDF 405
+V++H L+TV ++I D + +GN D+
Sbjct: 579 IVIAHR---LSTVRNADVIAGFDGGVIVEQGNHDEL 611
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 170 NFSVAARGK-ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
+FS +R + ++LK ++++ G+ LVG +G GKST ++L+
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 105/223 (47%), Gaps = 35/223 (15%)
Query: 501 VSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV----- 554
V F+YP R L + + + G +A+VG +G GKST++ LL P G V
Sbjct: 1036 VVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGK 1095
Query: 555 ----RRSQKLR--IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRA----KLG 604
Q LR +G SQ + + + ++ + + +S +E VRA +
Sbjct: 1096 EIKQLNVQWLRAQLGIVSQEPI----LFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIH 1151
Query: 605 KF--GLPSHNHLTPIA----KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDAL 658
+F LP + T + +LSGGQK R+ + +PHILLLDE T+ LD +S +
Sbjct: 1152 QFIDSLPDKYN-TRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVV 1210
Query: 659 ADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
+ALD+ G ++++H R+ + I V++NG V
Sbjct: 1211 QEALDKAREGRTCIVIAH------RLSTIQNADLIVVIQNGKV 1247
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 96/192 (50%), Gaps = 19/192 (9%)
Query: 501 VSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR-SQ 558
+ FSYP+R++ + L +++ + G VA+VG +G GKST + L+ P +G V Q
Sbjct: 393 IHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQ 452
Query: 559 KLRI--GRYSQHFVDLLTME----ETPVSYLLRLHPDQEGLSKQEAVRAKLGKF----GL 608
+R RY + + +++ E T ++ +R + + + E + + L
Sbjct: 453 DIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKL 512
Query: 609 PSHNHLTPI----AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE 664
P H T + A+LSGGQK R+ + P ILLLDE T+ LD +S + ALD+
Sbjct: 513 P-HQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK 571
Query: 665 FTGG--VVLVSH 674
G ++++H
Sbjct: 572 AREGRTTIVIAH 583
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 96/205 (46%), Gaps = 33/205 (16%)
Query: 180 LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239
+L+ S+ + G+ LVG +G GKST+++LL + P V L +E+ + +
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWL 1105
Query: 240 QA---VVSAHEEL--VKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSD 294
+A +VS L + E +A NS V YE++
Sbjct: 1106 RAQLGIVSQEPILFDCSIAENIAYGDNSRVVS------------------YEEIV---RA 1144
Query: 295 AAEAQASKILAGL--GFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
A EA + + L + + + T+ SGG + RI++ARAL QP +LLLDE T+ LD
Sbjct: 1145 AKEANIHQFIDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALD 1203
Query: 353 LRAVLWLEEYL--CRWKKTLVVVSH 375
+ ++E L R +T +V++H
Sbjct: 1204 TESEKVVQEALDKAREGRTCIVIAH 1228
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 313 MQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYL--CRWKKTL 370
+ G SGG + RI++ARAL P +LLLDE T+ LD + ++ L R +T
Sbjct: 519 LVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTT 578
Query: 371 VVVSHDRDFLNTV-CTEIIHLHDQKLHFYRGNFDDF 405
+V++H L+TV ++I D + +GN D+
Sbjct: 579 IVIAHR---LSTVRNADVIAGFDGGVIVEQGNHDEL 611
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
Query: 170 NFSVAARGK-ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
+FS +R + ++LK ++++ G+ LVG +G GKST ++L+
Sbjct: 394 HFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM 436
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 108/213 (50%), Gaps = 22/213 (10%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV------RRSQKLR--IGR 564
L +V + I+ G + + G G+GKSTLL ++AG + PT G+V ++ ++R IG
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIGI 84
Query: 565 YSQHFVDLLTMEET--PVSYLLR-LHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLS 621
Q+ D E V++ ++ +PD++ + + +G S P LS
Sbjct: 85 AFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVG-LDFDSFKDRVPFF-LS 142
Query: 622 GGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF-TGG--VVLVSHDSRL 678
GG+K RV S+ + +P IL+LDEP LD + L ++++ T G V+L+SHD
Sbjct: 143 GGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHD--- 199
Query: 679 ISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711
I V + +R + V+E G F GT E+ E
Sbjct: 200 IETVINHVDR--VVVLEKGK-KVFDGTRMEFLE 229
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 304 LAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYL 363
GL F + R SGG + R+++A + +P +L+LDEP LD L +
Sbjct: 125 FVGLDF-DSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 183
Query: 364 CRWK---KTLVVVSHD 376
+WK KT++++SHD
Sbjct: 184 EKWKTLGKTVILISHD 199
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 101/214 (47%), Gaps = 30/214 (14%)
Query: 516 VDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV----RR-----SQKLRIGRYS 566
V I G V ++GP+G+GK+T+L L+AG PT+G+V +R QK +G
Sbjct: 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVF 93
Query: 567 QHFVDL--LTMEETPVSYLLRLHPDQEGLSKQEA---VRAKLGKFGLPSHNHLTPIAKLS 621
Q++ +T+ + VS+ LR ++ + K E VR L L S+ + P +LS
Sbjct: 94 QNYALFQHMTVYDN-VSFGLR----EKRVPKDEMDARVRELLRFMRLESYANRFP-HELS 147
Query: 622 GGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL----DEFTGGVVLVSHDSR 677
GGQ+ RV +P +LL DEP +D Q L + DE V V+HD
Sbjct: 148 GGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE 207
Query: 678 LISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711
V D + V+ G V +F GT EE E
Sbjct: 208 EALEVAD-----RVLVLHEGNVEQF-GTPEEVYE 235
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 104/235 (44%), Gaps = 40/235 (17%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEV--VGD 234
G ++ S +I G+ GL+GP+G GK+T+L+L+A + P DV + + V +
Sbjct: 27 GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIA--GLERPTKGDVWIGGKRVTDLPP 84
Query: 235 DRSAIQAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSD 294
+ + V + + ++ ++ S ++ EL +++
Sbjct: 85 QKRNVGLVFQNYALFQHM-----TVYDNVSFGLREKRVPKDEMDARVRELLRFMRL---- 135
Query: 295 AAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR 354
E+ A++ F E+ SGG + R++LARAL +P +LL DEP +D +
Sbjct: 136 --ESYANR------FPHEL--------SGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
Query: 355 AVLWLEEYLCR----WKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDF 405
L ++ + T V V+HD++ E + + D+ L + GN + F
Sbjct: 180 IRRELRTFVRQVHDEMGVTSVFVTHDQE-------EALEVADRVLVLHEGNVEQF 227
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 36/221 (16%)
Query: 510 DFKLS-DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS---------QK 559
+F+L+ D ++G D ++GP GAGKS L L+AG + P GEVR + ++
Sbjct: 13 NFRLNVDFEMGRDY---CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER 69
Query: 560 LRIGRYSQHFVDL--LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPI 617
IG Q + L++ ++Y LR E + + KLG +H
Sbjct: 70 RGIGFVPQDYALFPHLSVYRN-IAYGLRNVERVERDRRVREMAEKLGI----AHLLDRKP 124
Query: 618 AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL----DEFTGGVVLVS 673
A+LSGG++ RV + +P +LLLDEP + +D+++ L + L EF ++ V+
Sbjct: 125 ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVT 184
Query: 674 HD------------SRLISRVCDDEERSEIWVVENGTVSRF 702
HD L R+ + + E++ +NG V+ F
Sbjct: 185 HDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEF 225
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 307 LGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR 354
LG + +P + SGG R R++LARAL +QP LLLLDEP + +DL+
Sbjct: 114 LGIAHLLDRKPAR-LSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 96/216 (44%), Gaps = 30/216 (13%)
Query: 503 FSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR-SQKL- 560
F R L++V + + G ++G +GAGKSTL+ + PTEG V Q+L
Sbjct: 11 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT 70
Query: 561 ------------RIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEA---VRAKLGK 605
+IG QHF +LL+ + L L D K E V L
Sbjct: 71 TLSESELTKARRQIGMIFQHF-NLLSSRTVFGNVALPLELDNT--PKDEVKRRVTELLSL 127
Query: 606 FGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF 665
GL + P + LSGGQK RV S P +LL DE T+ LD + ++ + L +
Sbjct: 128 VGLGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDI 186
Query: 666 TG----GVVLVSHDSRLISRVCDDEERSEIWVVENG 697
++L++H+ ++ R+CD + V+ NG
Sbjct: 187 NRRLGLTILLITHEMDVVKRICDC-----VAVISNG 217
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 103/218 (47%), Gaps = 24/218 (11%)
Query: 171 FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQE 230
F R + L + S+ + G+ YG++G +G GKSTL++ + + P + VL+ QE
Sbjct: 11 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS--VLVDGQE 68
Query: 231 VVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQI 290
+ S EL K R ++ + ++ L +L
Sbjct: 69 LTTLSES----------ELTKARRQIGMIFQHFNLLSSRTVFGN-------VALPLELDN 111
Query: 291 LGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNH 350
D + + +++L+ +G + P+ + SGG + R+++ARAL P +LL DE T+
Sbjct: 112 TPKDEVKRRVTELLSLVGLGDKHDSYPS-NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 351 LD---LRAVL-WLEEYLCRWKKTLVVVSHDRDFLNTVC 384
LD R++L L++ R T+++++H+ D + +C
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRIC 208
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 30/216 (13%)
Query: 503 FSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR-SQKL- 560
F R L++V + + G ++G +GAGKSTL+ + PTEG V Q+L
Sbjct: 34 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT 93
Query: 561 ------------RIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEA---VRAKLGK 605
+IG QHF +LL+ + L L D K E V L
Sbjct: 94 TLSESELTKARRQIGXIFQHF-NLLSSRTVFGNVALPLELDNT--PKDEVKRRVTELLSL 150
Query: 606 FGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF 665
GL + P + LSGGQK RV S P +LL D+ T+ LD + ++ + L +
Sbjct: 151 VGLGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI 209
Query: 666 TG----GVVLVSHDSRLISRVCDDEERSEIWVVENG 697
++L++H+ ++ R+CD + V+ NG
Sbjct: 210 NRRLGLTILLITHEXDVVKRICDC-----VAVISNG 240
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 24/218 (11%)
Query: 171 FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQE 230
F R + L + S+ + G+ YG++G +G GKSTL++ + + P + VL+ QE
Sbjct: 34 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS--VLVDGQE 91
Query: 231 VVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQI 290
+ S EL K R ++ + ++ L +L
Sbjct: 92 LTTLSES----------ELTKARRQIGXIFQHFNLLSSRTVFGN-------VALPLELDN 134
Query: 291 LGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNH 350
D + + +++L+ +G + P+ + SGG + R+++ARAL P +LL D+ T+
Sbjct: 135 TPKDEVKRRVTELLSLVGLGDKHDSYPS-NLSGGQKQRVAIARALASNPKVLLCDQATSA 193
Query: 351 LD---LRAVL-WLEEYLCRWKKTLVVVSHDRDFLNTVC 384
LD R++L L++ R T+++++H+ D + +C
Sbjct: 194 LDPATTRSILELLKDINRRLGLTILLITHEXDVVKRIC 231
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 111/221 (50%), Gaps = 29/221 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRI---------G 563
L D++ I+ G +A+ G GAGK++LL ++ G+L P+EG+++ S ++ G
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG 113
Query: 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSK-QEAVRAKLGKFGLPSHNHLTPIAKLSG 622
++ + ++ +E +++ +E +SK E LG+ G+ LSG
Sbjct: 114 TIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT----------LSG 163
Query: 623 GQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLI--S 680
GQ+AR+ + LLD P +LD+ + + ++ L+++ +R++ S
Sbjct: 164 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-----CKLMANKTRILVTS 218
Query: 681 RVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQREIKAEV 721
++ ++ +I ++ G+ S F GTF E ++LQ + +++
Sbjct: 219 KMEHLKKADKILILHEGS-SYFYGTFSEL-QNLQPDFSSKL 257
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD-LRAVLWLEEYLCRW--KKTLV 371
G + SGG R RISLARA++ L LLD P +LD L E +C+ KT +
Sbjct: 155 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 214
Query: 372 VVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407
+V+ + L +I+ LH+ +FY G F + ++
Sbjct: 215 LVTSKMEHLKKA-DKILILHEGSSYFY-GTFSELQN 248
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 96/216 (44%), Gaps = 30/216 (13%)
Query: 503 FSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR-SQKL- 560
F R L++V + + G ++G +GAGKSTL+ + PTEG V Q+L
Sbjct: 34 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT 93
Query: 561 ------------RIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEA---VRAKLGK 605
+IG QHF +LL+ + L L D K E V L
Sbjct: 94 TLSESELTKARRQIGMIFQHF-NLLSSRTVFGNVALPLELDNT--PKDEVKRRVTELLSL 150
Query: 606 FGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF 665
GL + P + LSGGQK RV S P +LL D+ T+ LD + ++ + L +
Sbjct: 151 VGLGDKHDSYP-SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDI 209
Query: 666 TG----GVVLVSHDSRLISRVCDDEERSEIWVVENG 697
++L++H+ ++ R+CD + V+ NG
Sbjct: 210 NRRLGLTILLITHEMDVVKRICDC-----VAVISNG 240
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 24/218 (11%)
Query: 171 FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQE 230
F R + L + S+ + G+ YG++G +G GKSTL++ + + P + VL+ QE
Sbjct: 34 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS--VLVDGQE 91
Query: 231 VVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQI 290
+ S EL K R ++ + ++ L +L
Sbjct: 92 LTTLSES----------ELTKARRQIGMIFQHFNLLSSRTVFGN-------VALPLELDN 134
Query: 291 LGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNH 350
D + + +++L+ +G + P+ + SGG + R+++ARAL P +LL D+ T+
Sbjct: 135 TPKDEVKRRVTELLSLVGLGDKHDSYPS-NLSGGQKQRVAIARALASNPKVLLCDQATSA 193
Query: 351 LD---LRAVL-WLEEYLCRWKKTLVVVSHDRDFLNTVC 384
LD R++L L++ R T+++++H+ D + +C
Sbjct: 194 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRIC 231
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 103/225 (45%), Gaps = 39/225 (17%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV----- 554
V+F+YP R+ L ++++ I G VA+VG +G+GKST+ +L+ EGE+
Sbjct: 346 NVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGH 405
Query: 555 ---------RRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGK 605
R+Q + + F D + ++Y E S+++ A
Sbjct: 406 DLREYTLASLRNQVALVSQNVHLFNDTVA---NNIAY-----ARTEQYSREQIEEAARMA 457
Query: 606 FGLPSHNHL-----TPIAK----LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSID 656
+ + N + T I + LSGGQ+ R+ + IL+LDE T+ LD +S
Sbjct: 458 YAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 657 ALADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
A+ ALDE ++++H R+ E+ EI VVE+G +
Sbjct: 518 AIQAALDELQKNRTSLVIAH------RLSTIEKADEIVVVEDGVI 556
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 93/213 (43%), Gaps = 44/213 (20%)
Query: 154 EGQDDADANVKDITIDNFSVAARGKEL--LKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
EG+ + D+ N + G+++ L++ +++I GK LVG +G GKST+ L
Sbjct: 330 EGKRVIERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASL- 388
Query: 212 AWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLRE-EVASLQNSTSVXXXXX 270
I +ID E E++ D H+ LRE +ASL+N ++
Sbjct: 389 ----ITRFYDID----EGEILMD----------GHD----LREYTLASLRNQVALVSQNV 426
Query: 271 XXXXXXXXXKLA----ELYEKLQILGSDAAEAQASKILAGLGFTKEMQ-------GRPTK 319
+A E Y + QI +A+++ + F +M G
Sbjct: 427 HLFNDTVANNIAYARTEQYSREQI-------EEAARMAYAMDFINKMDNGLDTVIGENGV 479
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
SGG R RI++ARAL +L+LDE T+ LD
Sbjct: 480 LLSGGQRQRIAIARALLRDSPILILDEATSALD 512
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 111/221 (50%), Gaps = 29/221 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRI---------G 563
L D++ I+ G +A+ G GAGK++LL ++ G+L P+EG+++ S ++ G
Sbjct: 36 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG 95
Query: 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSK-QEAVRAKLGKFGLPSHNHLTPIAKLSG 622
++ + ++ +E +++ +E +SK E LG+ G+ LSG
Sbjct: 96 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT----------LSG 145
Query: 623 GQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLI--S 680
GQ+AR+ + LLD P +LD+ + + ++ L+++ +R++ S
Sbjct: 146 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-----CKLMANKTRILVTS 200
Query: 681 RVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQREIKAEV 721
++ ++ +I ++ G+ S F GTF E ++LQ + +++
Sbjct: 201 KMEHLKKADKILILHEGS-SYFYGTFSEL-QNLQPDFSSKL 239
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD-LRAVLWLEEYLCRW--KKTLV 371
G + SGG R RISLARA++ L LLD P +LD L E +C+ KT +
Sbjct: 137 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 196
Query: 372 VVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407
+V+ + L +I+ LH+ +FY G F + ++
Sbjct: 197 LVTSKMEHLKKA-DKILILHEGSSYFY-GTFSELQN 230
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 39/225 (17%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR---- 555
V+F+YP RE L ++++ I G VA+VG +G+GKST+ +L+ EG +
Sbjct: 346 NVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGH 405
Query: 556 ----------RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGK 605
R+Q + + F D + ++Y E S+++ A
Sbjct: 406 DLREYTLASLRNQVALVSQNVHLFNDTVA---NNIAY-----ARTEEYSREQIEEAARMA 457
Query: 606 FGLPSHNHL-----TPIAK----LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSID 656
+ + N + T I + LSGGQ+ R+ + IL+LDE T+ LD +S
Sbjct: 458 YAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESER 517
Query: 657 ALADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
A+ ALDE ++++H R+ E+ EI VVE+G +
Sbjct: 518 AIQAALDELQKNRTSLVIAH------RLSTIEQADEIVVVEDGII 556
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 92/213 (43%), Gaps = 44/213 (20%)
Query: 154 EGQDDADANVKDITIDNFSVAARGKEL--LKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
EG+ D D+ N + G+E+ L++ +++I GK LVG +G GKST+ L
Sbjct: 330 EGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASL- 388
Query: 212 AWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLRE-EVASLQNSTSVXXXXX 270
I +ID E ++ D H+ LRE +ASL+N ++
Sbjct: 389 ----ITRFYDID----EGHILMD----------GHD----LREYTLASLRNQVALVSQNV 426
Query: 271 XXXXXXXXXKLA----ELYEKLQILGSDAAEAQASKILAGLGFTKEMQ-------GRPTK 319
+A E Y + QI +A+++ + F +M G
Sbjct: 427 HLFNDTVANNIAYARTEEYSREQI-------EEAARMAYAMDFINKMDNGLDTIIGENGV 479
Query: 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
SGG R RI++ARAL +L+LDE T+ LD
Sbjct: 480 LLSGGQRQRIAIARALLRDSPILILDEATSALD 512
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 111/221 (50%), Gaps = 29/221 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRI---------G 563
L D++ I+ G +A+ G GAGK++LL ++ G+L P+EG+++ S ++ G
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG 83
Query: 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSK-QEAVRAKLGKFGLPSHNHLTPIAKLSG 622
++ + ++ +E +++ +E +SK E LG+ G+ LSG
Sbjct: 84 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT----------LSG 133
Query: 623 GQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLI--S 680
GQ+AR+ + LLD P +LD+ + + ++ L+++ +R++ S
Sbjct: 134 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-----CKLMANKTRILVTS 188
Query: 681 RVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQREIKAEV 721
++ ++ +I ++ G+ S F GTF E ++LQ + +++
Sbjct: 189 KMEHLKKADKILILHEGS-SYFYGTFSEL-QNLQPDFSSKL 227
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD-LRAVLWLEEYLCRW--KKTLV 371
G + SGG R RISLARA++ L LLD P +LD L E +C+ KT +
Sbjct: 125 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 184
Query: 372 VVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407
+V+ + L +I+ LH+ +FY G F + ++
Sbjct: 185 LVTSKMEHLKKA-DKILILHEGSSYFY-GTFSELQN 218
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 9/187 (4%)
Query: 505 YPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGR 564
Y E+F ++ ++ G +A++G NG GKSTLL+LL G P +G++ Q IG
Sbjct: 13 YYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQS--IGF 70
Query: 565 YSQHFVDLLTMEETPVSYLLR-LHPDQEGLSKQEAVRAKLGKFGLPSHNHLTP--IAKLS 621
Q F + + R H + K + + + HL LS
Sbjct: 71 VPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLS 130
Query: 622 GGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG----VVLVSHDSR 677
GGQ+ ++ S+ ++LLDEPT+ LD+ + D + L + VV +H
Sbjct: 131 GGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190
Query: 678 LISRVCD 684
+ + +
Sbjct: 191 QVVAIAN 197
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR---AVLWLEEYLCRWKK-TLV 371
R S SGG R I +ARA+ + L+LLDEPT+ LDL VL L L + + T+V
Sbjct: 124 REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVV 183
Query: 372 VVSHDRDFLNTVCTEIIHLHDQKLHF 397
+H + + + + + L+ Q F
Sbjct: 184 FTTHQPNQVVAIANKTLLLNKQNFKF 209
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 164 KDITIDNFSVAARGKELL-KSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
K ++++N + + L + + ++ G ++G NG GKSTLL LL P+ I
Sbjct: 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 223 DV 224
+V
Sbjct: 63 EV 64
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 89/187 (47%), Gaps = 25/187 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV-----------------R 555
L + + + G V+I+G +G+GKSTLL +L +PTEG+V
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 556 RSQKLRIGRYSQHFVDLLTMEETPVSYLLRL-HPDQEGLSKQEAVRAKLGKFGLPSHNHL 614
R++KL + + LT E + +L++ P +E + E + L + GL
Sbjct: 80 RNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL---LSELGLGDKLSR 136
Query: 615 TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADA---LDEFTGGVVL 671
P +LSGG++ RV ++P +L DEPT +LD + + D ++E +V+
Sbjct: 137 KP-YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVM 195
Query: 672 VSHDSRL 678
V+H+ L
Sbjct: 196 VTHEREL 202
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 34/220 (15%)
Query: 169 DNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVE 228
+N RG E+LK S+ + G+ ++G +G GKSTLL +L + P V L
Sbjct: 8 ENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGL--LDAPTEGKVFLEG 65
Query: 229 QEVVGDDRSAIQAVVSAHEELV----KLREEVASLQNSTSVXXXXXXXXXXXXXXKLAEL 284
+EV + + + + V L E+ +L+N +
Sbjct: 66 KEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALEN----------------------V 103
Query: 285 YEKLQILGSDAAEAQ--ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLL 342
+ +G EA+ +L+ LG ++ +P + SGG + R+++ARAL +P LL
Sbjct: 104 IVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYE-LSGGEQQRVAIARALANEPILL 162
Query: 343 LLDEPTNHLD---LRAVLWLEEYLCRWKKTLVVVSHDRDF 379
DEPT +LD + V+ + + ++V+V+H+R+
Sbjct: 163 FADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL 202
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 31/209 (14%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQH-FVD 571
L D++ I+ G +A+ G GAGK++LL ++ G+L P+EG+++ S RI SQ+ ++
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSWIM 111
Query: 572 LLTMEET--PVSY-------LLRLHPDQEGLSK-QEAVRAKLGKFGLPSHNHLTPIAKLS 621
T++E VSY +++ +E +SK E LG+ G+ LS
Sbjct: 112 PGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT----------LS 161
Query: 622 GGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLI-- 679
GGQ+AR+ + LLD P +LD+ + + ++ L+++ +R++
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-----CKLMANKTRILVT 216
Query: 680 SRVCDDEERSEIWVVENGTVSRFPGTFEE 708
S++ ++ +I ++ G+ S F GTF E
Sbjct: 217 SKMEHLKKADKILILHEGS-SYFYGTFSE 244
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD-LRAVLWLEEYLCRW--KKTLV 371
G + SGG R RISLARA++ L LLD P +LD L E +C+ KT +
Sbjct: 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 372 VVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407
+V+ + L +I+ LH+ +FY G F + ++
Sbjct: 214 LVTSKMEHLKKA-DKILILHEGSSYFY-GTFSELQN 247
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 107/209 (51%), Gaps = 31/209 (14%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQH-FVD 571
L D++ I+ G +A+ G GAGK++LL ++ G+L P+EG+++ S RI SQ+ ++
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSWIM 111
Query: 572 LLTMEET--PVSY-------LLRLHPDQEGLSK-QEAVRAKLGKFGLPSHNHLTPIAKLS 621
T++E VSY +++ +E +SK E LG+ G+ LS
Sbjct: 112 PGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT----------LS 161
Query: 622 GGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLI-- 679
GGQ+AR+ + LLD P +LD+ + + ++ L+++ +R++
Sbjct: 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-----CKLMANKTRILVT 216
Query: 680 SRVCDDEERSEIWVVENGTVSRFPGTFEE 708
S++ ++ +I ++ G+ S F GTF E
Sbjct: 217 SKMEHLKKADKILILHEGS-SYFYGTFSE 244
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD-LRAVLWLEEYLCRW--KKTLV 371
G + SGG R RISLARA++ L LLD P +LD L E +C+ KT +
Sbjct: 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 372 VVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407
+V+ + L +I+ LH+ +FY G F + ++
Sbjct: 214 LVTSKMEHLKKA-DKILILHEGSSYFY-GTFSELQN 247
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 114/223 (51%), Gaps = 34/223 (15%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL 572
L D++ I+ G +A+ G GAGK++LL ++ G+L P+EG+++ S ++ + F +
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI---SFCSQFSWI 80
Query: 573 L--TMEET--PVSY-------LLRLHPDQEGLSK-QEAVRAKLGKFGLPSHNHLTPIAKL 620
+ T++E VSY +++ +E +SK E LG+ G+ L
Sbjct: 81 MPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT----------L 130
Query: 621 SGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLI- 679
SGGQ+AR+ + LLD P +LD+ + + ++ L+++ +R++
Sbjct: 131 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-----CKLMANKTRILV 185
Query: 680 -SRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQREIKAEV 721
S++ ++ +I ++ G+ S F GTF E ++LQ + +++
Sbjct: 186 TSKMEHLKKADKILILHEGS-SYFYGTFSEL-QNLQPDFSSKL 226
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD-LRAVLWLEEYLCRW--KKTLV 371
G + SGG R RISLARA++ L LLD P +LD L E +C+ KT +
Sbjct: 124 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 183
Query: 372 VVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407
+V+ + L +I+ LH+ +FY G F + ++
Sbjct: 184 LVTSKMEHLKKA-DKILILHEGSSYFY-GTFSELQN 217
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 103/226 (45%), Gaps = 32/226 (14%)
Query: 500 EVSFSYPNREDFKL-SDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG------ 552
V F+YP R + + D + I G+ A+VGP+G+GKST+L+LL P G
Sbjct: 346 NVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDG 405
Query: 553 -EVRRSQKL----RIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVR----AKL 603
++R+ + +IG SQ + ++Y D ++ +E R A
Sbjct: 406 HDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYG---ADDPSSVTAEEIQRVAEVANA 462
Query: 604 GKF--GLPSHNHLTPIAK---LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDAL 658
F P + K LSGGQK R+ + P ILLLDE T+ LD ++ +
Sbjct: 463 VAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLV 522
Query: 659 ADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTVSRF 702
+ALD G V++++H R+ + + + V++ G ++ +
Sbjct: 523 QEALDRLMDGRTVLVIAH------RLSTIKNANMVAVLDQGKITEY 562
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK--KTLVVVSH 375
SGG + RI++ARAL P +LLLDE T+ LD ++E L R +T++V++H
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAH 540
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 170 NFSVAARGK-ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
+F+ AR + + + S+ I G LVGP+G GKST+L LL
Sbjct: 348 HFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL 390
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 87/211 (41%), Gaps = 40/211 (18%)
Query: 503 FSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR-RSQKLR 561
Y ++ ++DV + I G VAI+GPNGAGKSTLL LL G LSP+ GE Q L
Sbjct: 17 LHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLN 76
Query: 562 -------------IGRYSQ-----HFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKL 603
+ +YS+ +++ M P D++ L + V A+
Sbjct: 77 SWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGG----SQDRQALQQ---VMAQT 129
Query: 604 GKFGLPSHNHLTPIAKLSGGQKARVVFTSI------SMSKPHILLLDEPTNHLDMQSIDA 657
L ++ LSGG++ RV + P L LDEPT+ LD+
Sbjct: 130 DCLALAQRDYRV----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQH 185
Query: 658 LADALDEFTG----GVVLVSHDSRLISRVCD 684
L + T V V HD L + D
Sbjct: 186 TLRLLRQLTRQEPLAVCCVLHDLNLAALYAD 216
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 157 DDADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
D A V + + + + L+ S+ I+ G+ ++GPNG GKSTLL+LL
Sbjct: 3 DMAVTPVALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLL 57
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 6/44 (13%)
Query: 316 RPTKSFSGGWRMRISLARALF----VQPT--LLLLDEPTNHLDL 353
R + SGG + R+ LAR L QPT L LDEPT+ LDL
Sbjct: 137 RDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDL 180
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 103/221 (46%), Gaps = 31/221 (14%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL-------AGDLSPTEG 552
+V+F+Y +E LS V I G VA+VG +G+GKST+ NL +G +
Sbjct: 346 DVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGH 405
Query: 553 EVRRSQKLRIGRY----SQH---FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGK 605
+VR + + R+ SQ+ F D + ++Y +E + +Q A +A +
Sbjct: 406 DVRDYKLTNLRRHFALVSQNVHLFNDTIA---NNIAYAAEGEYTREQI-EQAARQAHAME 461
Query: 606 FGLPSHNHLTPI-----AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALAD 660
F L + LSGGQ+ RV + +L+LDE T+ LD +S A+
Sbjct: 462 FIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQA 521
Query: 661 ALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
ALDE V++++H R+ E+ EI VV+ G +
Sbjct: 522 ALDELQKNKTVLVIAH------RLSTIEQADEILVVDEGEI 556
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 98/231 (42%), Gaps = 45/231 (19%)
Query: 158 DADANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP 217
+ + +VKD+T F+ + K L S I GK LVG +G GKST+ L
Sbjct: 339 NGEVDVKDVT---FTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLF------ 389
Query: 218 VPKNIDVLLVEQEVVGDDRSAIQAVVSAHE----ELVKLREEVASLQNSTSVXXXXXXXX 273
+ DV D +I + H+ +L LR A + S +V
Sbjct: 390 -TRFYDV----------DSGSI--CLDGHDVRDYKLTNLRRHFALV--SQNVHLFNDTIA 434
Query: 274 XXXXXXKLAELYEKLQILGSDAAEAQASKILAGLGFTKEM-QGRPT------KSFSGGWR 326
E Y + QI QA++ + F + M QG T S SGG R
Sbjct: 435 NNIAYAAEGE-YTREQI-------EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQR 486
Query: 327 MRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYL--CRWKKTLVVVSH 375
R+++ARAL +L+LDE T+ LD + ++ L + KT++V++H
Sbjct: 487 QRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAH 537
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 26/198 (13%)
Query: 500 EVSFSYPNREDFKL-SDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG------ 552
V F+YP R + + D + I G+ A+VGP+G+GKST+L+LL P G
Sbjct: 377 NVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDG 436
Query: 553 -EVRRSQKL----RIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVR----AKL 603
++R+ + +IG SQ + ++Y D ++ +E R A
Sbjct: 437 HDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYG---ADDPSSVTAEEIQRVAEVANA 493
Query: 604 GKF--GLPSHNHLTPIAK---LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDAL 658
F P + K LSGGQK R+ + P ILLLDE T+ LD ++ +
Sbjct: 494 VAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLV 553
Query: 659 ADALDEFTGG--VVLVSH 674
+ALD G V++++H
Sbjct: 554 QEALDRLMDGRTVLVIAH 571
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK--KTLVVVSH 375
SGG + RI++ARAL P +LLLDE T+ LD ++E L R +T++V++H
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAH 571
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 170 NFSVAARGK-ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
+F+ AR + + + S+ I G LVGP+G GKST+L LL
Sbjct: 379 HFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLL 421
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 33/222 (14%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV----- 554
E++++Y + L +++ I G AI+G NG GKSTL G L P+ G +
Sbjct: 12 ELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNK 70
Query: 555 ------RRSQKLR--IGRY-----SQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRA 601
+ KLR IG +Q F + + + + ++L D+ ++ V
Sbjct: 71 PIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDE----IRKRVDN 126
Query: 602 KLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADA 661
L + G+ H P LS GQK RV + + +P +L+LDEPT LD + +
Sbjct: 127 ALKRTGI-EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKL 185
Query: 662 L----DEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
L E +++ +HD ++ CD+ ++V++ G V
Sbjct: 186 LVEMQKELGITIIIATHDIDIVPLYCDN-----VFVMKEGRV 222
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 98/233 (42%), Gaps = 33/233 (14%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR 236
G LK ++ I G+ ++G NG+GKSTL + + I P + +L D
Sbjct: 20 GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQ--NFNGILKPSSGRILF--------DN 69
Query: 237 SAIQAVVSAHEELVKLREEVASL----QNSTSVXXXXXXXXXXXXXXKLAELYEKLQILG 292
I + + ++KLRE + + N KL E
Sbjct: 70 KPID---YSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE--------- 117
Query: 293 SDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
D + L G + ++ +PT S G + R+++A L ++P +L+LDEPT LD
Sbjct: 118 -DEIRKRVDNALKRTGI-EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
Query: 353 LRAVLWLEEYLCRWKK----TLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401
V + + L +K T+++ +HD D + C + + + ++ +GN
Sbjct: 176 PMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRV-ILQGN 227
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 30/224 (13%)
Query: 500 EVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558
+VSF+YPN + + L + + G A+VGPNG+GKST+ LL PT G+V
Sbjct: 21 DVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDG 80
Query: 559 KLRIGRYSQHFV--DLLTMEETP----------VSYLLRLHPDQEGLSKQEAVRAKLGKF 606
+ + +Y H++ + + + P ++Y L P E ++ AV + G
Sbjct: 81 EPLV-QYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEIT---AVAMESGAH 136
Query: 607 ----GLPSHNHLTPIA----KLSGGQKARVVFTSISMSKPHILLLDEPTNHLD----MQS 654
G P + T + +LSGGQ+ V + KP +L+LD+ T+ LD ++
Sbjct: 137 DFISGFP-QGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRV 195
Query: 655 IDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGT 698
L ++ + + V+L++H L R E V E GT
Sbjct: 196 QRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGT 239
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 103/234 (44%), Gaps = 47/234 (20%)
Query: 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSA 238
++L+ + + GK LVGPNG GKST+ LL + + P VLL + +V D
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQYDHHY 90
Query: 239 IQAVVSA--HEELV---KLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGS 293
+ V+A E L+ RE +A T ++ + +
Sbjct: 91 LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPT----------------------MEEITA 128
Query: 294 DAAEAQASKILAGL--GFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHL 351
A E+ A ++G G+ E+ G SGG R ++LARAL +P LL+LD+ T+ L
Sbjct: 129 VAMESGAHDFISGFPQGYDTEV-GETGNQLSGGQRQAVALARALIRKPRLLILDQATSAL 187
Query: 352 DLRAVLWLEEYLC---RW-KKTLVVVSHDRD---------FL--NTVCTEIIHL 390
D L ++ L W +T+++++H FL +VC + HL
Sbjct: 188 DAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHL 241
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 103/189 (54%), Gaps = 23/189 (12%)
Query: 499 IEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG------ 552
+ ++ S E F L ++++ ++ G +V I+GPNG+GK+TLL ++G L P G
Sbjct: 7 VGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPYSGNIFING 64
Query: 553 -EVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQ---EAVRA-KLGKFG 607
EVR+ + RYS + + + T V+ ++ L+ + +GL + E ++A KLG+
Sbjct: 65 MEVRKIRNYI--RYSTNLPEAYEIGVT-VNDIVYLYEELKGLDRDLFLEMLKALKLGEEI 121
Query: 608 LPSHNHLTPIAKLSGGQKARVVFTSISM-SKPHILLLDEPTNHLDMQSIDALADALDEFT 666
L + KLS GQ +V TS+++ S+P I+ LDEP ++D ++ + E+
Sbjct: 122 LRRK-----LYKLSAGQSV-LVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG 175
Query: 667 GGVVLVSHD 675
+LV+H+
Sbjct: 176 KEGILVTHE 184
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 100/232 (43%), Gaps = 39/232 (16%)
Query: 171 FSVAARGKELLKSTSVRIS-HGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQ 229
+++ +G E ++ + +G++ ++GPNG GK+TLL+ ++ +P NI + +E
Sbjct: 9 ITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGL-LPYSGNIFINGME- 66
Query: 230 EVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQ 289
V R+ I+ + E E+ N + LYE+L+
Sbjct: 67 --VRKIRNYIRYSTNLPEAY-----EIGVTVND------------------IVYLYEELK 101
Query: 290 ILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTN 349
L D ++L L +E+ R S G + + + AL QP ++ LDEP
Sbjct: 102 GLDRDLF----LEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFE 157
Query: 350 HLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401
++D + Y+ + K ++V+H+ D LN + K +F GN
Sbjct: 158 NVDAARRHVISRYIKEYGKEGILVTHELDMLNLY-------KEYKAYFLVGN 202
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 110/221 (49%), Gaps = 29/221 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRI---------G 563
L D++ I+ G +A+ G GAGK++LL ++ G+L P+EG+++ S ++ G
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSWIMPG 113
Query: 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSK-QEAVRAKLGKFGLPSHNHLTPIAKLSG 622
++ + ++ +E +++ +E +SK E LG+ G+ LS
Sbjct: 114 TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT----------LSE 163
Query: 623 GQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLI--S 680
GQ+A++ + LLD P +LD+ + + ++ L+++ +R++ S
Sbjct: 164 GQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-----CKLMANKTRILVTS 218
Query: 681 RVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQREIKAEV 721
++ ++ +I ++ G+ S F GTF E ++LQ + +++
Sbjct: 219 KMEHLKKADKILILHEGS-SYFYGTFSEL-QNLQPDFSSKL 257
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD-LRAVLWLEEYLCRW--KKTLV 371
G + S G + +ISLARA++ L LLD P +LD L E +C+ KT +
Sbjct: 155 GEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 214
Query: 372 VVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407
+V+ + L +I+ LH+ +FY G F + ++
Sbjct: 215 LVTSKMEHLKKA-DKILILHEGSSYFY-GTFSELQN 248
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 98/218 (44%), Gaps = 26/218 (11%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR----- 555
V F+Y + E L D+ + +A GP+G GKST+ +LL PT GE+
Sbjct: 7 VDFAYDDSEQI-LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65
Query: 556 ------RSQKLRIGRYSQHFVDLL-TMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGL 608
+ + +IG SQ + T+ E L + D++ + A+ +
Sbjct: 66 IDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 609 PSHNHLTPIA----KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE 664
P + T + K+SGGQ+ R+ + P IL+LDE T LD +S + ALD
Sbjct: 126 PDQLN-TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184
Query: 665 FTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTVS 700
G ++++H +S + D + +I+ +E G ++
Sbjct: 185 LMKGRTTLVIAHR---LSTIVDAD---KIYFIEKGQIT 216
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK--TLVVVSH 375
SGG R R+++ARA P +L+LDE T LD + +++ L K T +V++H
Sbjct: 140 ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAH 196
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRI---------G 563
L ++++ I+ G +AI G G+GK++LL L+ G+L +EG ++ S ++ G
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPG 113
Query: 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSK-QEAVRAKLGKFGLPSHNHLTPIAKLSG 622
++ + ++ +E +++ Q+ ++K E LG+ G+ LSG
Sbjct: 114 TIKENIISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT----------LSG 163
Query: 623 GQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLI--S 680
GQ+AR+ + LLD P +LD+ + + + ++ L+++ +R++ S
Sbjct: 164 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV-----CKLMANKTRILVTS 218
Query: 681 RVCDDEERSEIWVVENGTVSRFPGTFEE 708
++ + +I ++ G+ S F GTF E
Sbjct: 219 KMEHLRKADKILILHQGS-SYFYGTFSE 245
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRA-VLWLEEYLCRW--KKTLV 371
G + SGG R RISLARA++ L LLD P +LD+ E +C+ KT +
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 372 VVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407
+V+ + L +I+ LH +FY G F + +S
Sbjct: 215 LVTSKMEHLRKA-DKILILHQGSSYFY-GTFSELQS 248
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 26/156 (16%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIG 563
L+++++ I G +A++GP+G+GKSTLL +AG PT G++ +K +G
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVG 78
Query: 564 RYSQH---FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIA-- 618
Q+ + + + LR P +E K V L H+ +
Sbjct: 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKML---------HIDKLLNR 129
Query: 619 ---KLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
+LSGGQ+ RV + +P +LLLDEP ++LD
Sbjct: 130 YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD 165
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKK----TLVVVSHD 376
SGG + R+++ARAL +P +LLLDEP ++LD L + L R +K T V V+HD
Sbjct: 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD 193
Query: 377 R 377
+
Sbjct: 194 Q 194
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
L + +++I G+ L+GP+G GKSTLL +A
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIA 50
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRI---------G 563
L ++++ I+ G +AI G G+GK++LL L+ G+L +EG ++ S ++ G
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPG 113
Query: 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSK-QEAVRAKLGKFGLPSHNHLTPIAKLSG 622
++ + ++ +E +++ Q+ ++K E LG+ G+ LSG
Sbjct: 114 TIKENIIRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT----------LSG 163
Query: 623 GQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLI--S 680
GQ+AR+ + LLD P +LD+ + + + ++ L+++ +R++ S
Sbjct: 164 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV-----CKLMANKTRILVTS 218
Query: 681 RVCDDEERSEIWVVENGTVSRFPGTFEE 708
++ + +I ++ G+ S F GTF E
Sbjct: 219 KMEHLRKADKILILHQGS-SYFYGTFSE 245
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRA-VLWLEEYLCRW--KKTLV 371
G + SGG R RISLARA++ L LLD P +LD+ E +C+ KT +
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 372 VVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407
+V+ + L +I+ LH +FY G F + +S
Sbjct: 215 LVTSKMEHLRKA-DKILILHQGSSYFY-GTFSELQS 248
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 101/229 (44%), Gaps = 51/229 (22%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR----- 555
V FSY + + L DV + G +A+VGP+GAGKST+L LL + G +R
Sbjct: 59 VHFSYADGRE-TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQD 117
Query: 556 ------RSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEG----------------- 592
S + IG Q D + +T ++ +R G
Sbjct: 118 ISQVTQASLRSHIGVVPQ---DTVLFNDT-IADNIRYGRVTAGNDEVEAAAQAAGIHDAI 173
Query: 593 LSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM 652
++ E R ++G+ GL KLSGG+K RV + P I+LLDE T+ LD
Sbjct: 174 MAFPEGYRTQVGERGL----------KLSGGEKQRVAIARTILKAPGIILLDEATSALDT 223
Query: 653 QSIDALADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
+ A+ +L + ++V+H RL + V D +I V+++G +
Sbjct: 224 SNERAIQASLAKVCANRTTIVVAH--RLSTVVNAD----QILVIKDGCI 266
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 43/214 (20%)
Query: 175 ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGD 234
A G+E L+ S + G+ LVGP+G GKST+L+LL +R + + G
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLL-FRFYDISSGC------IRIDGQ 116
Query: 235 DRSAI-QAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGS 293
D S + QA + +H +V + L N T Y ++ G+
Sbjct: 117 DISQVTQASLRSHIGVVP---QDTVLFNDTIADNIR---------------YGRV-TAGN 157
Query: 294 DAAEAQASKILAGL---------GFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLL 344
D EA A AG+ G+ ++ R K SGG + R+++AR + P ++LL
Sbjct: 158 DEVEAAAQA--AGIHDAIMAFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILL 214
Query: 345 DEPTNHLDL---RAVLWLEEYLCRWKKTLVVVSH 375
DE T+ LD RA+ +C +T +VV+H
Sbjct: 215 DEATSALDTSNERAIQASLAKVC-ANRTTIVVAH 247
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRI---------G 563
L ++++ I+ G +AI G G+GK++LL L+ G+L +EG ++ S ++ G
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPG 113
Query: 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSK-QEAVRAKLGKFGLPSHNHLTPIAKLSG 622
++ + ++ +E +++ Q+ ++K E LG+ G+ LSG
Sbjct: 114 TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT----------LSG 163
Query: 623 GQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLI--S 680
GQ+AR+ + LLD P +LD+ + + + ++ L+++ +R++ S
Sbjct: 164 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV-----CKLMANKTRILVTS 218
Query: 681 RVCDDEERSEIWVVENGTVSRFPGTFEE 708
++ + +I ++ G+ S F GTF E
Sbjct: 219 KMEHLRKADKILILHQGS-SYFYGTFSE 245
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRA-VLWLEEYLCRW--KKTLV 371
G + SGG R RISLARA++ L LLD P +LD+ E +C+ KT +
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 372 VVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407
+V+ + L +I+ LH +FY G F + +S
Sbjct: 215 LVTSKMEHLRKA-DKILILHQGSSYFY-GTFSELQS 248
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 102/208 (49%), Gaps = 28/208 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRI---------G 563
L ++++ I+ G +AI G G+GK++LL L+ G+L +EG ++ S ++ G
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFSWIMPG 113
Query: 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSK-QEAVRAKLGKFGLPSHNHLTPIAKLSG 622
++ + ++ +E +++ Q+ ++K E LG+ G+ LSG
Sbjct: 114 TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVT----------LSG 163
Query: 623 GQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLI--S 680
GQ+AR+ + LLD P +LD+ + + + ++ L+++ +R++ S
Sbjct: 164 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV-----CKLMANKTRILVTS 218
Query: 681 RVCDDEERSEIWVVENGTVSRFPGTFEE 708
++ + +I ++ G+ S F GTF E
Sbjct: 219 KMEHLRKADKILILHQGS-SYFYGTFSE 245
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRA-VLWLEEYLCRW--KKTLV 371
G + SGG R RISLARA++ L LLD P +LD+ E +C+ KT +
Sbjct: 155 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 214
Query: 372 VVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407
+V+ + L +I+ LH +FY G F + +S
Sbjct: 215 LVTSKMEHLRKA-DKILILHQGSSYFY-GTFSELQS 248
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 26/173 (15%)
Query: 500 EVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558
+VSF+YPN + + L + + G A+VGPNG+GKST+ LL PT G+V
Sbjct: 21 DVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDG 80
Query: 559 KLRIGRYSQHFV--DLLTMEETP----------VSYLLRLHPDQEGLSKQEAVRAKLGKF 606
+ + +Y H++ + + + P ++Y L P E ++ AV + G
Sbjct: 81 EPLV-QYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEIT---AVAMESGAH 136
Query: 607 ----GLPSHNHLTPIA----KLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
G P + T + +LSGGQ+ V + KP +L+LD T+ LD
Sbjct: 137 DFISGFP-QGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 99/234 (42%), Gaps = 47/234 (20%)
Query: 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSA 238
++L+ + + GK LVGPNG GKST+ LL + + P VLL + +V D
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQYDHHY 90
Query: 239 IQAVVSA--HEELV---KLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGS 293
+ V+A E L+ RE +A T ++ + +
Sbjct: 91 LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPT----------------------MEEITA 128
Query: 294 DAAEAQASKILAGL--GFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHL 351
A E+ A ++G G+ E+ G SGG R ++LARAL +P LL+LD T+ L
Sbjct: 129 VAMESGAHDFISGFPQGYDTEV-GETGNQLSGGQRQAVALARALIRKPRLLILDNATSAL 187
Query: 352 DLRAVLWLEEYLC---RWKKTLVVV----------SHDRDFL--NTVCTEIIHL 390
D L ++ L W V++ +H FL +VC + HL
Sbjct: 188 DAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHL 241
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 113/223 (50%), Gaps = 34/223 (15%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL 572
L D++ I+ G +A+ G GAGK++LL ++ G+L P+EG+++ S ++ + F +
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRI---SFCSQFSWI 110
Query: 573 L--TMEET--PVSY-------LLRLHPDQEGLSK-QEAVRAKLGKFGLPSHNHLTPIAKL 620
+ T++E VSY +++ +E +SK E LG+ G+ L
Sbjct: 111 MPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT----------L 160
Query: 621 SGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLI- 679
S GQ+A++ + LLD P +LD+ + + ++ L+++ +R++
Sbjct: 161 SEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV-----CKLMANKTRILV 215
Query: 680 -SRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQREIKAEV 721
S++ ++ +I ++ G+ S F GTF E ++LQ + +++
Sbjct: 216 TSKMEHLKKADKILILHEGS-SYFYGTFSEL-QNLQPDFSSKL 256
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD-LRAVLWLEEYLCRW--KKTLV 371
G + S G + +ISLARA++ L LLD P +LD L E +C+ KT +
Sbjct: 154 GEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRI 213
Query: 372 VVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407
+V+ + L +I+ LH+ +FY G F + ++
Sbjct: 214 LVTSKMEHLKKA-DKILILHEGSSYFY-GTFSELQN 247
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 23/201 (11%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
+K S+ I G+ L+GP+G GK+T L+ +A + P I +E +V D +
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQI---YIEDNLVADPEKGV- 77
Query: 241 AVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQA 300
V E +VA + S ++ KL ++ ++ + +
Sbjct: 78 -FVPPKER------DVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQ-------EIDKRV 123
Query: 301 SKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLE 360
++ LG T E+ R + SGG R R++L RA+ +P + L DEP ++LD + +
Sbjct: 124 REVAEXLGLT-ELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXR 182
Query: 361 EYLCRWKK----TLVVVSHDR 377
L + ++ T + V+HD+
Sbjct: 183 AELKKLQRQLGVTTIYVTHDQ 203
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 16/156 (10%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL 572
+ D+ + I G + ++GP+G GK+T L +AG PT G++ L FV
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 573 LTMEETPVSYLLRLHPDQ------------EGLSKQEA---VRAKLGKFGLPSHNHLTPI 617
+ V L+P + KQE VR GL + P
Sbjct: 82 KERDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEXLGLTELLNRKP- 140
Query: 618 AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ 653
+LSGGQ+ RV + +P + L DEP ++LD +
Sbjct: 141 RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 103/212 (48%), Gaps = 37/212 (17%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL 572
L ++++ I+ G +AI G G+GK++LL L+ G+L +EG ++ S ++ + F +
Sbjct: 54 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV---SFCSQFSWI 110
Query: 573 L--TMEET--PVSY----------LLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIA 618
+ T++E VSY +L D ++Q+ LG+ G+
Sbjct: 111 MPGTIKENIIGVSYDEYRYKSVVKACQLQQDITKFAEQD--NTVLGEGGVT--------- 159
Query: 619 KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRL 678
LSGGQ+AR+ + LLD P +LD+ + + + ++ L+++ +R+
Sbjct: 160 -LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCV-----CKLMANKTRI 213
Query: 679 I--SRVCDDEERSEIWVVENGTVSRFPGTFEE 708
+ S++ + +I ++ G+ S F GTF E
Sbjct: 214 LVTSKMEHLRKADKILILHQGS-SYFYGTFSE 244
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRA-VLWLEEYLCRW--KKTLV 371
G + SGG R RISLARA++ L LLD P +LD+ E +C+ KT +
Sbjct: 154 GEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 213
Query: 372 VVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFES 407
+V+ + L +I+ LH +FY G F + +S
Sbjct: 214 LVTSKMEHLRKA-DKILILHQGSSYFY-GTFSELQS 247
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 31/219 (14%)
Query: 165 DITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
DIT N F +L + ++ I G+ G+VG +G GKSTL KL+ ++ +P+N
Sbjct: 3 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENG 60
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA---SLQNSTSVXXXXXXXXXXXXXX 279
VL+ ++ D + ++ V V L++ V S+ ++ S+
Sbjct: 61 QVLIDGHDLALADPNWLRRQVG-----VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 115
Query: 280 KLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP 339
KLA ++ + S+ E + + G SGG R RI++ARAL P
Sbjct: 116 KLAGAHDFI----SELREGYNTIV-----------GEQGAGLSGGQRQRIAIARALVNNP 160
Query: 340 TLLLLDEPTNHLDLRA---VLWLEEYLCRWKKTLVVVSH 375
+L+ DE T+ LD + ++ +C+ +T+++++H
Sbjct: 161 KILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAH 198
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 42/226 (18%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV----- 554
+ F Y L ++++ I G + IVG +G+GKSTL L+ P G+V
Sbjct: 8 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 67
Query: 555 ----------RRSQKLRIG---RYSQHFVDLLTMEETPVS-----YLLRLHPDQEGLSK- 595
RR + + ++ +D +++ +S Y +L + +S+
Sbjct: 68 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 127
Query: 596 QEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI 655
+E +G+ G A LSGGQ+ R+ ++ P IL+ DE T+ LD +S
Sbjct: 128 REGYNTIVGEQG----------AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 177
Query: 656 DALADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
+ + + G V++++H R+ + I V+E G +
Sbjct: 178 HVIMRNMHKICKGRTVIIIAH------RLSTVKNADRIIVMEKGKI 217
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 31/219 (14%)
Query: 165 DITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
DIT N F +L + ++ I G+ G+VG +G GKSTL KL+ ++ +P+N
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENG 58
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA---SLQNSTSVXXXXXXXXXXXXXX 279
VL+ ++ D + ++ V V L++ V S+ ++ S+
Sbjct: 59 QVLIDGHDLALADPNWLRRQVG-----VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 113
Query: 280 KLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP 339
KLA ++ + S+ E + + G SGG R RI++ARAL P
Sbjct: 114 KLAGAHDFI----SELREGYNTIV-----------GEQGAGLSGGQRQRIAIARALVNNP 158
Query: 340 TLLLLDEPTNHLDLRA---VLWLEEYLCRWKKTLVVVSH 375
+L+ DE T+ LD + ++ +C+ +T+++++H
Sbjct: 159 KILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAH 196
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 42/226 (18%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV----- 554
+ F Y L ++++ I G + IVG +G+GKSTL L+ P G+V
Sbjct: 6 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 555 ----------RRSQKLRIG---RYSQHFVDLLTMEETPVS-----YLLRLHPDQEGLSK- 595
RR + + ++ +D +++ +S Y +L + +S+
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 125
Query: 596 QEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI 655
+E +G+ G A LSGGQ+ R+ ++ P IL+ DE T+ LD +S
Sbjct: 126 REGYNTIVGEQG----------AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 175
Query: 656 DALADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
+ + + G V++++H R+ + I V+E G +
Sbjct: 176 HVIMRNMHKICKGRTVIIIAH------RLSTVKNADRIIVMEKGKI 215
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 31/219 (14%)
Query: 165 DITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
DIT N F +L + ++ I G+ G+VG +G GKSTL KL+ ++ +P+N
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENG 64
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA---SLQNSTSVXXXXXXXXXXXXXX 279
VL+ ++ D + ++ V V L++ V S+ ++ S+
Sbjct: 65 QVLIDGHDLALADPNWLRRQVG-----VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 119
Query: 280 KLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP 339
KLA ++ + S+ E + + G SGG R RI++ARAL P
Sbjct: 120 KLAGAHDFI----SELREGYNTIV-----------GEQGAGLSGGQRQRIAIARALVNNP 164
Query: 340 TLLLLDEPTNHLDLRA---VLWLEEYLCRWKKTLVVVSH 375
+L+ DE T+ LD + ++ +C+ +T+++++H
Sbjct: 165 KILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAH 202
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 42/226 (18%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV----- 554
+ F Y L ++++ I G + IVG +G+GKSTL L+ P G+V
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 555 ----------RRSQKLRIG---RYSQHFVDLLTMEETPVS-----YLLRLHPDQEGLSK- 595
RR + + ++ +D +++ +S Y +L + +S+
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 131
Query: 596 QEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI 655
+E +G+ G A LSGGQ+ R+ ++ P IL+ DE T+ LD +S
Sbjct: 132 REGYNTIVGEQG----------AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 656 DALADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
+ + + G V++++H R+ + I V+E G +
Sbjct: 182 HVIMRNMHKICKGRTVIIIAH------RLSTVKNADRIIVMEKGKI 221
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 31/219 (14%)
Query: 165 DITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
DIT N F +L + ++ I G+ G+VG G GKSTL KL+ ++ +P+N
Sbjct: 3 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI--QRFYIPENG 60
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA---SLQNSTSVXXXXXXXXXXXXXX 279
VL+ ++ D + ++ V V L++ V S+ ++ S+
Sbjct: 61 QVLIDGHDLALADPNWLRRQVG-----VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 115
Query: 280 KLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP 339
KLA ++ + S+ E + + G SGG R RI++ARAL P
Sbjct: 116 KLAGAHDFI----SELREGYNTIV-----------GEQGAGLSGGQRQRIAIARALVNNP 160
Query: 340 TLLLLDEPTNHLDLRA---VLWLEEYLCRWKKTLVVVSH 375
+L+ DE T+ LD + ++ +C+ +T+++++H
Sbjct: 161 KILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAH 198
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 95/226 (42%), Gaps = 42/226 (18%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV----- 554
+ F Y L ++++ I G + IVG G+GKSTL L+ P G+V
Sbjct: 8 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGH 67
Query: 555 ----------RRSQKLRIG---RYSQHFVDLLTMEETPVS-----YLLRLHPDQEGLSK- 595
RR + + ++ +D +++ +S Y +L + +S+
Sbjct: 68 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 127
Query: 596 QEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI 655
+E +G+ G A LSGGQ+ R+ ++ P IL+ DE T+ LD +S
Sbjct: 128 REGYNTIVGEQG----------AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 177
Query: 656 DALADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
+ + + G V++++H R+ + I V+E G +
Sbjct: 178 HVIMRNMHKICKGRTVIIIAH------RLSTVKNADRIIVMEKGKI 217
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 35/241 (14%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR---- 555
V F Y D LS V+ + G+ VA++G G+GKSTL+NL+ + P G V
Sbjct: 346 NVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL 405
Query: 556 --RSQKLRIGRYSQHFVDLLTMEETPVSYLLR--LHPDQEGLSKQEAVR-AKLGKFGLPS 610
R+ KL+ R H + + E S ++ L +E + E V AK+ +
Sbjct: 406 DVRTVKLKDLR--GH-ISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQI---- 458
Query: 611 HNHLTPIAK------------LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDAL 658
H+ + + + SGGQK R+ + KP +L+LD+ T+ +D + +
Sbjct: 459 HDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI 518
Query: 659 ADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQ--RE 716
D L +T G ++ + + D +I V+ G V+ F GT +E E + RE
Sbjct: 519 LDGLKRYTKGCTTFIITQKIPTALLAD----KILVLHEGKVAGF-GTHKELLEHCKPYRE 573
Query: 717 I 717
I
Sbjct: 574 I 574
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 28/37 (75%)
Query: 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
R ++FSGG + R+S+ARAL +P +L+LD+ T+ +D
Sbjct: 475 RGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVD 511
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 102/219 (46%), Gaps = 31/219 (14%)
Query: 165 DITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
DIT N F +L + ++ I G+ G+VG +G GKSTL KL+ ++ +P+N
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENG 64
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA---SLQNSTSVXXXXXXXXXXXXXX 279
VL+ ++ D + ++ V V L++ V S+ ++ S+
Sbjct: 65 QVLIDGHDLALADPNWLRRQVG-----VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 119
Query: 280 KLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP 339
KLA ++ + S+ E + + G SGG R RI++ARAL P
Sbjct: 120 KLAGAHDFI----SELREGYNTIV-----------GEQGAGLSGGQRQRIAIARALVNNP 164
Query: 340 TLLLLDEPTNHLDLRA---VLWLEEYLCRWKKTLVVVSH 375
+L+ D+ T+ LD + ++ +C+ +T+++++H
Sbjct: 165 KILIFDQATSALDYESEHVIMRNMHKICK-GRTVIIIAH 202
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 96/226 (42%), Gaps = 42/226 (18%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV----- 554
+ F Y L ++++ I G + IVG +G+GKSTL L+ P G+V
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 555 ----------RRSQKLRIG---RYSQHFVDLLTMEETPVS-----YLLRLHPDQEGLSK- 595
RR + + ++ +D +++ +S Y +L + +S+
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 131
Query: 596 QEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI 655
+E +G+ G A LSGGQ+ R+ ++ P IL+ D+ T+ LD +S
Sbjct: 132 REGYNTIVGEQG----------AGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESE 181
Query: 656 DALADALDEFTGG--VVLVSHDSRLISRVCDDEERSEIWVVENGTV 699
+ + + G V++++H R+ + I V+E G +
Sbjct: 182 HVIMRNMHKICKGRTVIIIAH------RLSTVKNADRIIVMEKGKI 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 22/152 (14%)
Query: 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLR---------IGRY 565
D+++ I G V VGP+G GKSTLL ++AG + T G++ +K +G
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80
Query: 566 SQHFVDL--LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFG-LPSHNHLT---PIAK 619
Q + L++ E +S+ L+L +K+E + ++ + + HL P A
Sbjct: 81 FQSYALYPHLSVAEN-MSFGLKL-----AGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 133
Query: 620 LSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
LSGGQ+ RV +++P + LLDEP ++LD
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAVLWLE--EYLCRWKKTLV 371
R K+ SGG R R+++ R L +P++ LLDEP ++LD LR + +E R +T++
Sbjct: 129 RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 188
Query: 372 VVSHDRDFLNTVCTEIIHLH-------DQKLHFYRGNFDDFESGY 409
V+HD+ T+ +I+ L + L Y D F +G+
Sbjct: 189 YVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF 233
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 182 KSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
K ++ I G+ VGP+G GKSTLL+++A
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIA 50
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 78/152 (51%), Gaps = 22/152 (14%)
Query: 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLR---------IGRY 565
D+++ I G V VGP+G GKSTLL ++AG + T G++ +K +G
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80
Query: 566 SQHFVDL--LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFG-LPSHNHLT---PIAK 619
Q + L++ E +S+ L+L +K+E + ++ + + HL P A
Sbjct: 81 FQSYALYPHLSVAEN-MSFGLKL-----AGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 133
Query: 620 LSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
LSGGQ+ RV +++P + LLDEP ++LD
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAVLWLE--EYLCRWKKTLV 371
R K+ SGG R R+++ R L +P++ LLDEP ++LD LR + +E R +T++
Sbjct: 129 RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMI 188
Query: 372 VVSHDRDFLNTVCTEIIHLH-------DQKLHFYRGNFDDFESGY 409
V+HD+ T+ +I+ L + L Y D F +G+
Sbjct: 189 YVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF 233
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 182 KSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
K ++ I G+ VGP+G GKSTLL+++A
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIA 50
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 95/225 (42%), Gaps = 41/225 (18%)
Query: 184 TSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243
S + G+ L+GP+G GK+T L +LA P E+ DD V
Sbjct: 22 VSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---------SGEIYFDD-------V 65
Query: 244 SAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQI------LGSDAAE 297
++ K RE QN ++E + + D E
Sbjct: 66 LVNDIPPKYREVGMVFQNYALYPHMT--------------VFENIAFPLRARRISKDEVE 111
Query: 298 AQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRA 355
+ +I L + +PT+ SGG + R++LARAL QP +LL DEP ++LD LR
Sbjct: 112 KRVVEIARKLLIDNLLDRKPTQ-LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRM 170
Query: 356 VLWLE-EYLCR-WKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398
++ E ++L + T V V+HD+ T+ + I + KL Y
Sbjct: 171 IMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQY 215
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 18/142 (12%)
Query: 523 GTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL---------RIGRYSQHFVDL- 572
G VA++GP+G GK+T L +LAG PT GE+ L +G Q++
Sbjct: 29 GEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQNYALYP 88
Query: 573 -LTMEETPVSYLLRLHPDQEGLSKQEAVR--AKLGKFGLPSHNHLTPIAKLSGGQKARVV 629
+T+ E +++ LR +SK E + ++ + L + +LSGGQ+ RV
Sbjct: 89 HMTVFEN-IAFPLR----ARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVA 143
Query: 630 FTSISMSKPHILLLDEPTNHLD 651
+ +P +LL DEP ++LD
Sbjct: 144 LARALVKQPKVLLFDEPLSNLD 165
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 30/218 (13%)
Query: 165 DITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
DIT N F +L + ++ I G+ G+VG +G GKSTL KL+ ++ +P+N
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENG 58
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA---SLQNSTSVXXXXXXXXXXXXXX 279
VL+ ++ D + ++ V V L++ V S+ ++ S+
Sbjct: 59 QVLIDGHDLALADPNWLRRQVG-----VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 113
Query: 280 KLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP 339
KLA ++ + S+ E + + G SGG R RI++ARAL P
Sbjct: 114 KLAGAHDFI----SELREGYNTIV-----------GEQGAGLSGGQRQRIAIARALVNNP 158
Query: 340 TLLLLDEPTNHLDLRA---VLWLEEYLCRWKKTLVVVS 374
+L+ DE T+ LD + ++ +C+ + +++ +
Sbjct: 159 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAA 196
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 34/203 (16%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV----- 554
+ F Y L ++++ I G + IVG +G+GKSTL L+ P G+V
Sbjct: 6 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 65
Query: 555 ----------RRSQKLRIG---RYSQHFVDLLTMEETPVS-----YLLRLHPDQEGLSK- 595
RR + + ++ +D +++ +S Y +L + +S+
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 125
Query: 596 QEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI 655
+E +G+ G A LSGGQ+ R+ ++ P IL+ DE T+ LD +S
Sbjct: 126 REGYNTIVGEQG----------AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 175
Query: 656 DALADALDEFTGGVVLVSHDSRL 678
+ + + G ++ +RL
Sbjct: 176 HVIMRNMHKICKGRTVIIIAARL 198
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 30/218 (13%)
Query: 165 DITIDN--FSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222
DIT N F +L + ++ I G+ G+VG +G GKSTL KL+ ++ +P+N
Sbjct: 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI--QRFYIPENG 64
Query: 223 DVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA---SLQNSTSVXXXXXXXXXXXXXX 279
VL+ ++ D + ++ V V L++ V S+ ++ S+
Sbjct: 65 QVLIDGHDLALADPNWLRRQVG-----VVLQDNVLLNRSIIDNISLANPGMSVEKVIYAA 119
Query: 280 KLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP 339
KLA ++ + S+ E + + G SGG R RI++ARAL P
Sbjct: 120 KLAGAHDFI----SELREGYNTIV-----------GEQGAGLSGGQRQRIAIARALVNNP 164
Query: 340 TLLLLDEPTNHLDLRA---VLWLEEYLCRWKKTLVVVS 374
+L+ DE T+ LD + ++ +C+ + +++ +
Sbjct: 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAA 202
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 86/203 (42%), Gaps = 34/203 (16%)
Query: 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV----- 554
+ F Y L ++++ I G + IVG +G+GKSTL L+ P G+V
Sbjct: 12 NIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGH 71
Query: 555 ----------RRSQKLRIG---RYSQHFVDLLTMEETPVS-----YLLRLHPDQEGLSK- 595
RR + + ++ +D +++ +S Y +L + +S+
Sbjct: 72 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL 131
Query: 596 QEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI 655
+E +G+ G A LSGGQ+ R+ ++ P IL+ DE T+ LD +S
Sbjct: 132 REGYNTIVGEQG----------AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 656 DALADALDEFTGGVVLVSHDSRL 678
+ + + G ++ +RL
Sbjct: 182 HVIMRNMHKICKGRTVIIIAARL 204
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 78/152 (51%), Gaps = 22/152 (14%)
Query: 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLR---------IGRY 565
D+++ I G V VGP+G GKSTLL ++AG + T G++ +K +G
Sbjct: 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80
Query: 566 SQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFG-LPSHNHLT---PIAK 619
Q + L++ E +S+ L+L +K+E + ++ + + HL P A
Sbjct: 81 FQSYALYPHLSVAEN-MSFGLKL-----AGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 133
Query: 620 LSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
LSGGQ+ RV +++P + LLD+P ++LD
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLD 165
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAVLWLE--EYLCRWKKTLV 371
R K+ SGG R R+++ R L +P++ LLD+P ++LD LR + +E R +T++
Sbjct: 129 RKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMI 188
Query: 372 VVSHDRDFLNTVCTEIIHLH-------DQKLHFYRGNFDDFESGY 409
V+HD+ T+ +I+ L + L Y D F +G+
Sbjct: 189 YVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGF 233
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 182 KSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
K ++ I G+ VGP+G GKSTLL+++A
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIA 50
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 96/203 (47%), Gaps = 28/203 (13%)
Query: 500 EVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558
+V+FSYP + + + L ++ I GT A+VG G+GKST+ LL EG+++
Sbjct: 22 DVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RFYDAEGDIKIGG 80
Query: 559 KLRIGRYSQHFV---------DLLTMEETPVSYLLRLHPDQEGLSKQEAVR----AKLGK 605
K + +Y+++ + D + ET +L D + +E ++ A+L
Sbjct: 81 K-NVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA---TDEEVIKATKSAQLYD 136
Query: 606 F--GLPSHNHLTPIA----KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALA 659
F LP T + KLSGG++ R+ + P I++ DE T+ LD ++
Sbjct: 137 FIEALPKKWD-TIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 660 DALDEFTGG--VVLVSHDSRLIS 680
A+++ +++++H IS
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTIS 218
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 86/197 (43%), Gaps = 22/197 (11%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
LKS + I G LVG G GKST+ KLL +R D+ + + V +R++I+
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLL-YRFYDAEG--DIKIGGKNVNKYNRNSIR 92
Query: 241 AVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQA 300
+++ + L E +++ + K A+LY D EA
Sbjct: 93 SIIGIVPQDTILFNE--TIKYNILYGKLDATDEEVIKATKSAQLY--------DFIEALP 142
Query: 301 SKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLE 360
K + G SGG R RI++AR L P +++ DE T+ LD + +
Sbjct: 143 KK-------WDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 361 EYL--CRWKKTLVVVSH 375
+ + R +TL++++H
Sbjct: 196 KAVEDLRKNRTLIIIAH 212
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 19/192 (9%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
I +D +GK +LK S +I+ G ++ L G NG GK+TLL +L + +++
Sbjct: 22 IQLDQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
Query: 226 LVEQEVVGDDRSAIQAVVS--AHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAE 283
VG ++ + +H L K +E + S K
Sbjct: 82 GKXPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVIS------------GAFKSIG 129
Query: 284 LYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLL 343
+Y+ + D +A ++L +G + + Q + S G + R+ +ARAL QP +L+
Sbjct: 130 VYQDI----DDEIRNEAHQLLKLVGXSAKAQ-QYIGYLSTGEKQRVXIARALXGQPQVLI 184
Query: 344 LDEPTNHLDLRA 355
LDEP LD A
Sbjct: 185 LDEPAAGLDFIA 196
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 63/160 (39%), Gaps = 22/160 (13%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR-------------RSQK 559
L + I G + + G NGAGK+TLLN+L T G V + +
Sbjct: 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAETVR 96
Query: 560 LRIGRYSQHFVDLLTMEETPVSYLLR-------LHPDQEGLSKQEAVRAKLGKFGLPSHN 612
IG S ++ E + ++ ++ D + + EA +L K S
Sbjct: 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEA--HQLLKLVGXSAK 154
Query: 613 HLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM 652
I LS G+K RV +P +L+LDEP LD
Sbjct: 155 AQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDF 194
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 26/173 (15%)
Query: 500 EVSFSYPNREDFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558
+VSF+YPN + + L + + G A+VGPNG+GKST+ LL PT G+V
Sbjct: 21 DVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDG 80
Query: 559 KLRIGRYSQHFV--DLLTMEETP----------VSYLLRLHPDQEGLSKQEAVRAKLGKF 606
+ + +Y H++ + + + P ++Y L P E ++ AV + G
Sbjct: 81 EPLV-QYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEIT---AVAMESGAH 136
Query: 607 ----GLPSHNHLTPIA----KLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
G P + T + +L+ GQ+ V + KP +L+LD T+ LD
Sbjct: 137 DFISGFP-QGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALD 188
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 98/234 (41%), Gaps = 47/234 (20%)
Query: 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSA 238
++L+ + + GK LVGPNG GKST+ LL + + P VLL + +V D
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALL--QNLYQPTGGKVLLDGEPLVQYDHHY 90
Query: 239 IQAVVSA--HEELV---KLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGS 293
+ V+A E L+ RE +A T ++ + +
Sbjct: 91 LHTQVAAVGQEPLLFGRSFRENIAYGLTRTPT----------------------MEEITA 128
Query: 294 DAAEAQASKILAGL--GFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHL 351
A E+ A ++G G+ E+ G + G R ++LARAL +P LL+LD T+ L
Sbjct: 129 VAMESGAHDFISGFPQGYDTEV-GETGNQLAVGQRQAVALARALIRKPRLLILDNATSAL 187
Query: 352 DLRAVLWLEEYLC---RWKKTLVVV----------SHDRDFL--NTVCTEIIHL 390
D L ++ L W V++ +H FL +VC + HL
Sbjct: 188 DAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHL 241
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 31/165 (18%)
Query: 510 DFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------- 559
+FK L V + ++ G I+GPNG+GKSTL+N++ G L EG V K
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 560 ------LRIGRYSQHFVDLLTME----------ETPVSYLL--RLHPDQEGLSKQEAVRA 601
+R + Q ++ +E E+P++ L + P +E + ++
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEK---AF 135
Query: 602 KLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEP 646
K+ +F SH + +LSGGQ V M+ P ++++DEP
Sbjct: 136 KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 11/168 (6%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLL-AWRKIPVPKNIDVLLVEQEVVGDDRSAI 239
L S+ ++ G ++GPNG GKSTL+ ++ + K + V +++ + + +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR---VYFENKDITNKEPAEL 79
Query: 240 QAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQ 299
H +V+ + L+ T V L L+ K I + +
Sbjct: 80 Y-----HYGIVRTFQTPQPLKEMT-VLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEK 133
Query: 300 ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEP 347
A KIL L + + R SGG + + RAL P ++++DEP
Sbjct: 134 AFKILEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 91/214 (42%), Gaps = 41/214 (19%)
Query: 509 EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS----------PTEGEVRRSQ 558
E +L + + G + +VGPNGAGKSTLL +AG S P E
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKL 71
Query: 559 KLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGL-----PSHNH 613
L SQ TPV + L LH Q ++ E + G L S N
Sbjct: 72 ALHRAYLSQQQTPPFA---TPVWHYLTLH--QHDKTRTELLNDVAGALALDDKLGRSTN- 125
Query: 614 LTPIAKLSGGQKARVVFTSISM-----SKP--HILLLDEPTNHLDM---QSIDALADALD 663
+LSGG+ RV ++ + + P +LLLD+P N LD+ ++D + AL
Sbjct: 126 -----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALS 180
Query: 664 EFTGGVVLVSHDSRLISRVCDDEERSEIWVVENG 697
+ +V+ SHD ++ R+ W+++ G
Sbjct: 181 QQGLAIVMSSHD---LNHTLRHAHRA--WLLKGG 209
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 315 GRPTKSFSGGWRMRISLARALFVQPT--------LLLLDEPTNHLDLRAVLWLEEYLCRW 366
GR T SGG R+ LA A+ +Q T LLLLD+P N LD+ L++ L
Sbjct: 121 GRSTNQLSGGEWQRVRLA-AVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSAL 179
Query: 367 KK---TLVVVSHD 376
+ +V+ SHD
Sbjct: 180 SQQGLAIVMSSHD 192
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
L S + G+ LVGPNG GKSTLL +A
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMA 47
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 92/201 (45%), Gaps = 23/201 (11%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
++ S+ + G+ L+GP+G GK+T L+++A + P I + ++V D I
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI---YIGDKLVADPEKGI- 74
Query: 241 AVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQA 300
V + + + + +L +V KL+ + + +
Sbjct: 75 -FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPL-------------KLRKVPRQEIDQRV 120
Query: 301 SKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLE 360
++ LG T E+ R + SGG R R++L RA+ +P + L+DEP ++LD + + +
Sbjct: 121 REVAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMR 179
Query: 361 EYLCRWKK----TLVVVSHDR 377
L + ++ T + V+HD+
Sbjct: 180 AELKKLQRQLGVTTIYVTHDQ 200
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 22/147 (14%)
Query: 523 GTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFV-----DLLTMEE 577
G + ++GP+G GK+T L ++AG P+ G++ KL FV D+ + +
Sbjct: 29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQ 88
Query: 578 TPVSYL-------------LRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQ 624
+ Y LR P QE + VR GL + P +LSGGQ
Sbjct: 89 SYALYPHMTVYDNIAFPLKLRKVPRQE---IDQRVREVAELLGLTELLNRKP-RELSGGQ 144
Query: 625 KARVVFTSISMSKPHILLLDEPTNHLD 651
+ RV + KP + L+DEP ++LD
Sbjct: 145 RQRVALGRAIVRKPQVFLMDEPLSNLD 171
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 89/214 (41%), Gaps = 41/214 (19%)
Query: 509 EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS----------PTEGEVRRSQ 558
E +L + + G + +VGPNGAGKSTLL AG S P E
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKL 71
Query: 559 KLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLP-----SHNH 613
L SQ TPV + L LH Q ++ E + G L S N
Sbjct: 72 ALHRAYLSQQQTPPFA---TPVWHYLTLH--QHDKTRTELLNDVAGALALDDKLGRSTN- 125
Query: 614 LTPIAKLSGGQKARVVFTSISM-----SKP--HILLLDEPTNHLDM---QSIDALADALD 663
+LSGG+ RV ++ + + P +LLLDEP N LD+ ++D + AL
Sbjct: 126 -----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALS 180
Query: 664 EFTGGVVLVSHDSRLISRVCDDEERSEIWVVENG 697
+ +V SHD ++ R+ W+++ G
Sbjct: 181 QQGLAIVXSSHD---LNHTLRHAHRA--WLLKGG 209
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 315 GRPTKSFSGGWRMRISLARALFVQPT--------LLLLDEPTNHLDLRAVLWLEEYLCRW 366
GR T SGG R+ LA A+ +Q T LLLLDEP N LD+ L++ L
Sbjct: 121 GRSTNQLSGGEWQRVRLA-AVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL 179
Query: 367 -KKTLVVVSHDRDFLNTV 383
++ L +V D +T+
Sbjct: 180 SQQGLAIVXSSHDLNHTL 197
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 31/165 (18%)
Query: 510 DFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------- 559
+FK L V + ++ G I+GPNG+GKSTL+N++ G L EG V K
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 560 ------LRIGRYSQHFVDLLTME----------ETPVSYLL--RLHPDQEGLSKQEAVRA 601
+R + Q ++ +E E+P++ L + P +E + ++
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEK---AF 135
Query: 602 KLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEP 646
K+ +F SH + +LSGGQ V M+ P ++++D+P
Sbjct: 136 KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQP 180
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 11/168 (6%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLL-AWRKIPVPKNIDVLLVEQEVVGDDRSAI 239
L S+ ++ G ++GPNG GKSTL+ ++ + K + V +++ + + +
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR---VYFENKDITNKEPAEL 79
Query: 240 QAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQ 299
H +V+ + L+ T V L L+ K I + +
Sbjct: 80 Y-----HYGIVRTFQTPQPLKEMT-VLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEK 133
Query: 300 ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEP 347
A KIL L + + R SGG + + RAL P ++++D+P
Sbjct: 134 AFKILEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQP 180
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 31/165 (18%)
Query: 510 DFK-LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------- 559
+FK L V + + G I+GPNG+GKSTL+N++ G L EG V K
Sbjct: 19 EFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAE 78
Query: 560 ------LRIGRYSQHFVDLLTME----------ETPVSYLL--RLHPDQEGLSKQEAVRA 601
+R + Q ++ +E E+P++ L + P +E + ++
Sbjct: 79 LYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEK---AF 135
Query: 602 KLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEP 646
K+ +F SH + +LSGGQ V M+ P ++++DEP
Sbjct: 136 KILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 11/168 (6%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLL-AWRKIPVPKNIDVLLVEQEVVGDDRSAI 239
L S+ + G ++GPNG GKSTL+ ++ + K + V +++ + + +
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGR---VYFENKDITNKEPAEL 79
Query: 240 QAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQ 299
H +V+ + L+ T V L L+ K I + +
Sbjct: 80 Y-----HYGIVRTFQTPQPLKEMT-VLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEK 133
Query: 300 ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEP 347
A KIL L + + R SGG + + RAL P ++++DEP
Sbjct: 134 AFKILEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEP 180
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 32/219 (14%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240
L + S+++ G+ + ++GP G GK+ L+L+A VP + +LL ++V
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIA--GFHVPDSGRILLDGKDVT-------- 65
Query: 241 AVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQA 300
+L + ++A + + S+ ++ ++ + ++L + A+
Sbjct: 66 -------DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDT----ARD 114
Query: 301 SKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLE 360
KI + + R + SGG + R++LARAL P +LLLDEP + LD R
Sbjct: 115 LKI-------EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167
Query: 361 EYLC----RWKKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395
E L + K T++ ++HD+ + I + D KL
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKL 206
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 15/153 (9%)
Query: 509 EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV---------RRSQK 559
++F L ++ + ++ G I+GP GAGK+ L L+AG P G + +K
Sbjct: 12 KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK 71
Query: 560 LRIGRYSQHFVDLLTME-ETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIA 618
I Q++ M + + + +R+ ++ + R L L N LT
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTAR-DLKIEHLLDRNPLT--- 127
Query: 619 KLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
LSGG++ RV ++ P ILLLDEP + LD
Sbjct: 128 -LSGGEQQRVALARALVTNPKILLLDEPLSALD 159
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 89/214 (41%), Gaps = 41/214 (19%)
Query: 509 EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS----------PTEGEVRRSQ 558
E +L + + G + +VGPNGAGKSTLL AG S P E
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSGKGSIQFAGQPLEAWSATKL 71
Query: 559 KLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGL-----PSHNH 613
L SQ TPV + L LH Q ++ E + G L S N
Sbjct: 72 ALHRAYLSQQQTPPFA---TPVWHYLTLH--QHDKTRTELLNDVAGALALDDKLGRSTN- 125
Query: 614 LTPIAKLSGGQKARVVFTSISM-----SKP--HILLLDEPTNHLDM---QSIDALADALD 663
+LSGG+ RV ++ + + P +LLLDEP N LD+ ++D + AL
Sbjct: 126 -----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALC 180
Query: 664 EFTGGVVLVSHDSRLISRVCDDEERSEIWVVENG 697
+ +V SHD ++ R+ W+++ G
Sbjct: 181 QQGLAIVXSSHD---LNHTLRHAHRA--WLLKGG 209
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 315 GRPTKSFSGGWRMRISLARALFVQPT--------LLLLDEPTNHLDLRAVLWLEEY---L 363
GR T SGG R+ LA A+ +Q T LLLLDEP N LD+ L++ L
Sbjct: 121 GRSTNQLSGGEWQRVRLA-AVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSAL 179
Query: 364 CRWKKTLVVVSHD 376
C+ +V SHD
Sbjct: 180 CQQGLAIVXSSHD 192
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 311 KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAVLWLE--EYLCRW 366
+E+ R SGG R R+++ARA+ V+P +LL+DEP ++LD LR + E + +
Sbjct: 132 EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 191
Query: 367 KKTLVVVSHDR 377
K T + V+HD+
Sbjct: 192 KVTTIYVTHDQ 202
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 33/167 (19%)
Query: 502 SFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLR 561
+F+ N+ + + D G + ++GP+G GK+T L ++AG PTEG +
Sbjct: 23 NFTAVNKLNLTIKD-------GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY------ 69
Query: 562 IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHN--------- 612
+ V L ++ +S + + + ++ E + L P
Sbjct: 70 ---FGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 126
Query: 613 HLTPI--------AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
L I A+LSGGQ+ RV + +P +LL+DEP ++LD
Sbjct: 127 ELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 173
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 311 KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLD--LRAVLWLE--EYLCRW 366
+E+ R SGG R R+++ARA+ V+P +LL+DEP ++LD LR + E + +
Sbjct: 133 EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 192
Query: 367 KKTLVVVSHDR 377
K T + V+HD+
Sbjct: 193 KVTTIYVTHDQ 203
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 72/167 (43%), Gaps = 33/167 (19%)
Query: 502 SFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLR 561
+F+ N+ + + D G + ++GP+G GK+T L ++AG PTEG +
Sbjct: 24 NFTAVNKLNLTIKD-------GEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY------ 70
Query: 562 IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHN--------- 612
+ V L ++ +S + + + ++ E + L P
Sbjct: 71 ---FGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 127
Query: 613 HLTPI--------AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
L I A+LSGGQ+ RV + +P +LL+DEP ++LD
Sbjct: 128 ELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 174
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 90/214 (42%), Gaps = 41/214 (19%)
Query: 509 EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS----------PTEGEVRRSQ 558
E +L + + G + +VGPNGAGKSTLL +AG S P E
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATKL 71
Query: 559 KLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGL-----PSHNH 613
L SQ TPV + L LH Q ++ E + G L S N
Sbjct: 72 ALHRAYLSQQQTPPFA---TPVWHYLTLH--QHDKTRTELLNDVAGALALDDKLGRSTN- 125
Query: 614 LTPIAKLSGGQKARVVFTSISM-----SKP--HILLLDEPTNHLDM---QSIDALADALD 663
+LSGG+ RV ++ + + P +LLLD+P LD+ ++D + AL
Sbjct: 126 -----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALS 180
Query: 664 EFTGGVVLVSHDSRLISRVCDDEERSEIWVVENG 697
+ +V+ SHD ++ R+ W+++ G
Sbjct: 181 QQGLAIVMSSHD---LNHTLRHAHRA--WLLKGG 209
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
L S + G+ LVGPNG GKSTLL +A
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMA 47
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 18/184 (9%)
Query: 512 KLSDVDVGIDMGTR-----VAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYS 566
KL D + +D G + I+GPNG GK+T +L G+++ EG V +++ +
Sbjct: 278 KLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQ 337
Query: 567 QHFVDLLTMEETPVSYLLRLHPDQEGLSKQ--EAVRAKLGKFGLPSHNHLTPIAKLSGGQ 624
+ F + + T YL D S E V +L L N + LSGG+
Sbjct: 338 RIFPN---YDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESN----VNDLSGGE 390
Query: 625 KARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDSRLIS 680
++ + + + +LD+P+++LD++ +A A+ T ++ HD +
Sbjct: 391 LQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHD 450
Query: 681 RVCD 684
+ D
Sbjct: 451 YIAD 454
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 31/186 (16%)
Query: 524 TRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS-------QKLRIGRYSQHFVDLLTME 576
T + ++G NG GK+T+L +LAG++ P G+ ++ R +F +L + E
Sbjct: 26 TILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNE 85
Query: 577 ----------ETPVSYL------LRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKL 620
E +L + D+ G K++ V+ L L + + L
Sbjct: 86 LKIVHKIQYVEYASKFLKGTVNEILTKIDERG--KKDEVKELLNMTNLWNKDA----NIL 139
Query: 621 SGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG--VVLVSHDSRL 678
SGG R++ + + + + + D+P+++LD++ +A A+ E V++V HD +
Sbjct: 140 SGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIV 199
Query: 679 ISRVCD 684
+ + D
Sbjct: 200 LDYLTD 205
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 93/202 (46%), Gaps = 27/202 (13%)
Query: 195 GLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEEL----V 250
G++G NG+GK+T+LK+LA IP + + + + EV+ R + + + +EL +
Sbjct: 29 GVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRG--KEIYNYFKELYSNEL 86
Query: 251 KLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQASKILAGLGFT 310
K+ ++ ++ ++ +IL + ++ L T
Sbjct: 87 KIVHKIQYVEYASKFLKGTVN-----------------EILTKIDERGKKDEVKELLNMT 129
Query: 311 KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KK 368
+ + SGG R+ +A +L + + + D+P+++LD+R + + + + K
Sbjct: 130 -NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNK 188
Query: 369 TLVVVSHDRDFLNTVCTEIIHL 390
++VV HD L+ T++IH+
Sbjct: 189 YVIVVDHDLIVLD-YLTDLIHI 209
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 22/244 (9%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
++I + V+ K +L+ S+ + G+ + ++GPNG GKSTL LA R ++ +V
Sbjct: 2 LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR-----EDYEVT 56
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLRE---EVASLQNSTSVXXXXXXXXXXXXXXKLA 282
E G D A+ A E + + E+ + N + L
Sbjct: 57 GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLD 116
Query: 283 ELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTK-SFSGGWRMRISLARALFVQPTL 341
D + KI A L +++ R FSGG + R + + ++P L
Sbjct: 117 RF---------DFQDLMEEKI-ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPEL 166
Query: 342 LLLDEPTNHLDLRAVLWLEE---YLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398
+LDE + LD+ A+ + + L K++ ++V+H + L+ + + +H+ Q
Sbjct: 167 CILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 226
Query: 399 RGNF 402
G+F
Sbjct: 227 SGDF 230
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 25/184 (13%)
Query: 527 AIVGPNGAGKSTLLNLLAG--DLSPTEGEVRRSQK--LRIGRYSQHFVDLLTMEETPV-- 580
AI+GPNG+GKSTL LAG D T G V K L + + + + PV
Sbjct: 31 AIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 90
Query: 581 -----SYLL-------RLHPDQEGLSK---QEAVRAKLGKFGLPSHNHLTPI-AKLSGGQ 624
+ L R + QE L + Q+ + K+ +P + SGG+
Sbjct: 91 PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGE 150
Query: 625 KARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG---VVLVSHDSRLISR 681
K R +++ +P + +LDE + LD+ ++ +AD ++ G ++V+H R++
Sbjct: 151 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDY 210
Query: 682 VCDD 685
+ D
Sbjct: 211 IKPD 214
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 95/221 (42%), Gaps = 33/221 (14%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL 572
L+D+ + +D G + I+G +G GK+TLL LAG P GE+ S K + +
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTN----- 74
Query: 573 LTMEETPVSYLLR---LHP-------------DQEGLSKQEAVR--AKLGKFGLPSHNHL 614
L + E + YL++ L P + +G + QE R A L G+
Sbjct: 75 LPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGR 134
Query: 615 TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD----MQSIDALADALDEFTGGVV 670
P +LSGGQ+ R P ++LLDEP + LD Q + + AL V
Sbjct: 135 YP-HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAV 193
Query: 671 LVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711
VSHD + D I V++ G + + E Y++
Sbjct: 194 FVSHDREEALQYAD-----RIAVMKQGRILQTASPHELYRQ 229
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 292 GSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHL 351
G A E Q + + L E+ GR SGG + R +LARAL P L+LLDEP + L
Sbjct: 110 GRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSAL 169
Query: 352 D--LRAVLWLEEYLCRWK---KTLVVVSHDRD 378
D LR + E+ + + K+ V VSHDR+
Sbjct: 170 DEQLRRQIR-EDMIAALRANGKSAVFVSHDRE 200
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 22/244 (9%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
++I + V+ K +L+ S+ + G+ + ++GPNG GKSTL LA R ++ +V
Sbjct: 21 LSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR-----EDYEVT 75
Query: 226 LVEQEVVGDDRSAIQAVVSAHEELVKLRE---EVASLQNSTSVXXXXXXXXXXXXXXKLA 282
E G D A+ A E + + E+ + N + L
Sbjct: 76 GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLD 135
Query: 283 ELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTK-SFSGGWRMRISLARALFVQPTL 341
D + KI A L +++ R FSGG + R + + ++P L
Sbjct: 136 RF---------DFQDLMEEKI-ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPEL 185
Query: 342 LLLDEPTNHLDLRAVLWLEE---YLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398
+LDE + LD+ A+ + + L K++ ++V+H + L+ + + +H+ Q
Sbjct: 186 CILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245
Query: 399 RGNF 402
G+F
Sbjct: 246 SGDF 249
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 82/184 (44%), Gaps = 25/184 (13%)
Query: 527 AIVGPNGAGKSTLLNLLAG--DLSPTEGEVRRSQK--LRIGRYSQHFVDLLTMEETPV-- 580
AI+GPNG+GKSTL LAG D T G V K L + + + + PV
Sbjct: 50 AIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109
Query: 581 -----SYLL-------RLHPDQEGLSK---QEAVRAKLGKFGLPSHNHLTPI-AKLSGGQ 624
+ L R + QE L + Q+ + K+ +P + SGG+
Sbjct: 110 PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGE 169
Query: 625 KARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG---VVLVSHDSRLISR 681
K R +++ +P + +LDE + LD+ ++ +AD ++ G ++V+H R++
Sbjct: 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDY 229
Query: 682 VCDD 685
+ D
Sbjct: 230 IKPD 233
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 26/214 (12%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR----RSQKLRIGRYSQH 568
L ++ I G RV ++G G+GKSTLL+ L+ TEGE++ + + ++ +
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95
Query: 569 FVDLLTMEETPVSYLLR-------LHPDQE--GLSKQEAVRAKLGKFGLPSHNHLTPI-- 617
F ++ + S R H DQE ++ + +R+ + +F P +
Sbjct: 96 F-GVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQF--PGKLDFVLVDG 152
Query: 618 -AKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDS 676
LS G K + +SK ILLLDEP+ HLD + + L + ++ ++
Sbjct: 153 GCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEA 212
Query: 677 RLISRV-CDDEERSEIWVVENGTVSRFPGTFEEY 709
R+ + + CD + V+E V ++ E Y
Sbjct: 213 RIEAMLECD-----QFLVIEENKVRQYDSILELY 241
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 177 GKELLKSTSVRISHGKRYGLVGPNGMGKSTLL 208
G +L++ S IS G+R GL+G G GKSTLL
Sbjct: 33 GNAILENISFSISPGQRVGLLGRTGSGKSTLL 64
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLD 352
S G + + LAR++ + +LLLDEP+ HLD
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 187
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 53/226 (23%)
Query: 527 AIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEE--------- 577
AIVG + +GKST++ + L P G + + L G+ DLLTM E
Sbjct: 38 AIVGESASGKSTIIEAMTKTLPPN-GRILSGRVLYKGK------DLLTMREEELRKIRWK 90
Query: 578 ----TPVSYLLRLHPDQEGLSK-QEAVRAKLGKFGLPSHNHLTPIA-------------- 618
P + L+P + + ++ V A ++ SH+ L A
Sbjct: 91 EIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRW---SHSELIEKASEKLRMVRLNPEAV 147
Query: 619 ------KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQS----IDALADALDEFTGG 668
+LSGG K RV+ + P +L+LDEPT+ LD+ + I L +
Sbjct: 148 LNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKIT 207
Query: 669 VVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDLQ 714
++ V+HD + + + D ++ V+ G + + TF+ +K L
Sbjct: 208 LIFVTHDIAVAAELAD-----KVAVIYGGNLVEYNSTFQIFKNPLH 248
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDL----RAVLWLEEYLCRWKKTLVVVSHD 376
SGG + R+ +A AL + P +L+LDEPT+ LD+ + L+E K TL+ V+HD
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHD 214
Query: 377 RDFLNTVCTEIIHLHDQKLHFYRGNFDDFESGYE 410
V E L D+ Y GN ++ S ++
Sbjct: 215 I----AVAAE---LADKVAVIYGGNLVEYNSTFQ 241
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 35/202 (17%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL 572
L V++ + G A++GPNGAGKSTL +LAGD E V R + L G ++ ++L
Sbjct: 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD---PEYTVERGEILLDG---ENILEL 72
Query: 573 LTMEETPVSYLLRLHPDQE--GLSKQE----AVRAKLGKFGLPSHNHLTPIAK------- 619
E L E G++ A++AKLG+ + T + K
Sbjct: 73 SPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGR-EVGVAEFWTKVKKALELLDW 131
Query: 620 ------------LSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTG 667
SGG+K R + + +P +LDE + LD+ ++ +A ++ G
Sbjct: 132 DESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG 191
Query: 668 ---GVVLVSHDSRLISRVCDDE 686
G ++++H R+++ + D+
Sbjct: 192 PNFGALVITHYQRILNYIQPDK 213
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 105/234 (44%), Gaps = 30/234 (12%)
Query: 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225
+ I + + G+ +LK ++ + G+ + L+GPNG GKSTL K+LA + ++L
Sbjct: 4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEIL 63
Query: 226 LVEQEV--VGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAE 283
L + + + D A + + A + V++ ++ N + +
Sbjct: 64 LDGENILELSPDERARKGLFLAFQYPVEVPG--VTIANFLRLALQAKLGREVGVAEFWTK 121
Query: 284 LYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLL 343
+ + L++L D E+ S+ L + FSGG + R + + L ++PT +
Sbjct: 122 VKKALELL--DWDESYLSRYL-------------NEGFSGGEKKRNEILQLLVLEPTYAV 166
Query: 344 LDEPTNHLDLRAVLWLEEYLCRWKKTL-------VVVSHDRDFLNTVCTEIIHL 390
LDE + LD+ A+ + + R + +V++H + LN + + +H+
Sbjct: 167 LDETDSGLDIDAL----KVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHV 216
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 33/198 (16%)
Query: 501 VSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV------ 554
V FSY ++ L D+ I G +VA+VGP G+GK+T++NLL G++
Sbjct: 360 VWFSYDKKKPV-LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418
Query: 555 -----RRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLP 609
R S + IG Q + T + + Y G + +E A K
Sbjct: 419 IRKIKRSSLRSSIGIVLQDTILFSTTVKENLKY------GNPGATDEEIKEA--AKLTHS 470
Query: 610 SH--NHL-----TPIA----KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDAL 658
H HL T + LS GQ+ + T ++ P IL+LDE T+++D ++ ++
Sbjct: 471 DHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSI 530
Query: 659 ADALDEFTGG--VVLVSH 674
A+ + G ++++H
Sbjct: 531 QAAMWKLMEGKTSIIIAH 548
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLL 211
K +LK + I G++ LVGP G GK+T++ LL
Sbjct: 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLL 401
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 72/174 (41%), Gaps = 51/174 (29%)
Query: 502 SFSYP-----------NREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT 550
+FSYP N E+ + SD ++ + MG NG GK+TL+ LLAG L P
Sbjct: 353 AFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGE-------NGTGKTTLIKLLAGALKPD 405
Query: 551 EGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS 610
EG+ KL + Q ++ P G +Q + G+F P
Sbjct: 406 EGQ--DIPKLNVSMKPQ-----------------KIAPKFPGTVRQLFFKKIRGQFLNPQ 446
Query: 611 HNH--LTP----------IAKLSGGQKARVVFTSISMSKPH-ILLLDEPTNHLD 651
+ P + LSGG+ RV +++ P I L+DEP+ +LD
Sbjct: 447 FQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIV-LALGIPADIYLIDEPSAYLD 499
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 16/195 (8%)
Query: 191 GKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR-SAIQAVVSAHEEL 249
G+ GLVG NG+GKST LK+LA ++ P D QE++ R S +Q +
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKM--- 159
Query: 250 VKLREEVASLQNSTSVXXXXXXXXXXXXXXKLAELYEKLQILGSDAAEAQASKILAGLGF 309
L +++ ++ V K+ EL KL++ S + KIL
Sbjct: 160 --LEDDIKAIIKPQYV--DNIPRAIKGPVQKVGELL-KLRMEKSPEDVKRYIKILQ---- 210
Query: 310 TKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEY---LCRW 366
+ + R + SGG R ++ + + + + DEP+++LD++ L + L
Sbjct: 211 LENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAP 270
Query: 367 KKTLVVVSHDRDFLN 381
K ++ V HD L+
Sbjct: 271 TKYVICVEHDLSVLD 285
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 79/198 (39%), Gaps = 47/198 (23%)
Query: 523 GTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYS-----QHFVDLLTMEE 577
G + +VG NG GKST L +LAG QK +GR+ Q + E
Sbjct: 103 GQVLGLVGTNGIGKSTALKILAG-----------KQKPNLGRFDDPPEWQEIIKYFRGSE 151
Query: 578 TPVSYLLRLHPDQEGLSKQE-------AVRAKLGKFG--LPSHNHLTP------------ 616
+ L D + + K + A++ + K G L +P
Sbjct: 152 LQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQL 211
Query: 617 -------IAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM-QSIDA--LADALDEFT 666
I KLSGG+ R + + + + DEP+++LD+ Q ++A + +L T
Sbjct: 212 ENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT 271
Query: 667 GGVVLVSHDSRLISRVCD 684
V+ V HD ++ + D
Sbjct: 272 KYVICVEHDLSVLDYLSD 289
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVV 373
+ SGG R+++ AL + + L+DEP+ +LD + + + R+ KKT +V
Sbjct: 465 VQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIV 524
Query: 374 SHD 376
HD
Sbjct: 525 EHD 527
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 24/162 (14%)
Query: 502 SFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV------- 554
+F++ + L+ + I G VA+VG G GKS+LL+ L ++ EG V
Sbjct: 10 TFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVA 69
Query: 555 RRSQKLRIGRYS--QHFVDLLTMEETPVSYLLR---LHPDQEGLSKQEAVRAKLGKFGLP 609
Q+ I S ++ + +EE +++ L PD E L + R ++G+ G+
Sbjct: 70 YVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGD--RTEIGEKGV- 126
Query: 610 SHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651
LSGGQK RV S I L D+P + +D
Sbjct: 127 ---------NLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK-----KT 369
G + SGG + R+SLARA++ + L D+P + +D + E + K KT
Sbjct: 122 GEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKT 181
Query: 370 LVVVSHDRDFLNTV 383
++V+H +L V
Sbjct: 182 RILVTHSMSYLPQV 195
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 306 GLGFTKEMQGRPTKSFSGGWRMRISLARAL---FVQPTLLLLDEPTNHL---DLRAVLWL 359
GLG+ + G+P + SGG R+ LA L T+ +LDEPT L D+R +L +
Sbjct: 851 GLGYVR--LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNV 908
Query: 360 EEYLCRWKKTLVVVSHDRDFLNT 382
L T++V+ H+ D + T
Sbjct: 909 INGLVDKGNTVIVIEHNLDVIKT 931
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLN-LLAGDLSPTEGEVRRSQKLRIGRYSQ--- 567
L +DV +G ++ G +G+GKSTL+N +LA L+ R+ GR+++
Sbjct: 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVP----GRHTRVTG 712
Query: 568 --HFVDLLTMEETPVSYLLRLHP 588
+ L+ ++++P+ R +P
Sbjct: 713 LDYLDKLVRVDQSPIGRTPRSNP 735
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 306 GLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP---TLLLLDEPTNHLDLRAVLWLEEY 362
GLG+ K G+P + SGG R+ LA L + TL +LDEPT L + + L +
Sbjct: 531 GLGYMK--LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDV 588
Query: 363 LCRW---KKTLVVVSHDRDFLNT 382
L R T++V+ H+ D + T
Sbjct: 589 LHRLVDNGDTVLVIEHNLDVIKT 611
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 510 DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLN 541
+ L +V V I +GT VA+ G +G+GKSTL+N
Sbjct: 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVN 366
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 306 GLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP---TLLLLDEPTNHLDLRAVLWLEEY 362
GLG+ K G+P + SGG R+ LA L + TL +LDEPT L + + L +
Sbjct: 833 GLGYXK--LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDV 890
Query: 363 LCRW---KKTLVVVSHDRDFLNT 382
L R T++V+ H+ D + T
Sbjct: 891 LHRLVDNGDTVLVIEHNLDVIKT 913
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 510 DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLN 541
+ L +V V I +GT VA+ G +G+GKSTL+N
Sbjct: 637 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVN 668
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 306 GLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP---TLLLLDEPTNHLDLRAVLWLEEY 362
GLG+ K G+P + SGG R+ LA L + TL +LDEPT L + + L +
Sbjct: 833 GLGYMK--LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDV 890
Query: 363 LCRW---KKTLVVVSHDRDFLNT 382
L R T++V+ H+ D + T
Sbjct: 891 LHRLVDNGDTVLVIEHNLDVIKT 913
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 510 DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLN 541
+ L +V V I +GT VA+ G +G+GKSTL+N
Sbjct: 637 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVN 668
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
Query: 305 AGLGFTKEMQGRPTKSFSGGWRMRISLARALF---VQPTLLLLDEPTNHLDLRAVLWLEE 361
GLG+ K G+P + SGG RI LA L TL +LDEPT L V L E
Sbjct: 792 VGLGYVK--LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVE 849
Query: 362 YLCRW---KKTLVVVSHDRDFL 380
L R T++V+ H+ D +
Sbjct: 850 VLHRLVDRGNTVIVIEHNLDVI 871
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRY-----SQ 567
L ++DV I +G V + G +G+GKS+ L+ L P + KL G + +
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSS---LVMETLYPALMNLLHKTKLPAGEFDSIEGHE 656
Query: 568 HFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKAR 627
+ ++ ++++P+ R +P E +R+ +TP AK G K+R
Sbjct: 657 NIDKMIAIDQSPIGRTPRSNPATYTKVFDE-IRSLFA---------MTPAAKARGYNKSR 706
Query: 628 VVF 630
F
Sbjct: 707 FSF 709
>pdb|3QKR|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
pdb|3QKS|B Chain B, Mre11 Rad50 Binding Domain Bound To Rad50
Length = 179
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 312 EMQGRPTKSFSGGWRMRISLARALFV------QPTLLLLDEPTNHLD----LRAVLWLEE 361
E + RP SGG R+ + LA L + + +LL+LDEPT +LD + + +E
Sbjct: 80 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 139
Query: 362 YLCRWKKTLVVVSHDRDF 379
YL + + +++VSHD +
Sbjct: 140 YLKKIPQ-VILVSHDEEL 156
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 616 PIAKLSGGQKA------RVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG- 668
P+ LSGG++ R+ + + +L+LDEPT +LD + L ++ +
Sbjct: 85 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 144
Query: 669 --VVLVSHDSRL 678
V+LVSHD L
Sbjct: 145 PQVILVSHDEEL 156
>pdb|1II8|B Chain B, Crystal Structure Of The P. Furiosus Rad50 Atpase Domain
Length = 174
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 312 EMQGRPTKSFSGGWRMRISLARALFV------QPTLLLLDEPTNHLD----LRAVLWLEE 361
E + RP SGG R+ + LA L + + +LL+LDEPT +LD + + +E
Sbjct: 75 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 134
Query: 362 YLCRWKKTLVVVSHDRDF 379
YL + + +++VSHD +
Sbjct: 135 YLKKIPQ-VILVSHDEEL 151
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 616 PIAKLSGGQKA------RVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG- 668
P+ LSGG++ R+ + + +L+LDEPT +LD + L ++ +
Sbjct: 80 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 139
Query: 669 --VVLVSHDSRL 678
V+LVSHD L
Sbjct: 140 PQVILVSHDEEL 151
>pdb|3QKU|A Chain A, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
pdb|3QKU|B Chain B, Mre11 Rad50 Binding Domain In Complex With Rad50 And
Amp-Pnp
Length = 359
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 11/78 (14%)
Query: 312 EMQGRPTKSFSGGWRMRISLARALFV------QPTLLLLDEPTNHLD----LRAVLWLEE 361
E + RP SGG R+ + LA L + + +LL+LDEPT +LD + + +E
Sbjct: 260 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 319
Query: 362 YLCRWKKTLVVVSHDRDF 379
YL + + +++VSHD +
Sbjct: 320 YLKKIPQ-VILVSHDEEL 336
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 616 PIAKLSGGQKA------RVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG- 668
P+ LSGG++ R+ + + +L+LDEPT +LD + L ++ +
Sbjct: 265 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 324
Query: 669 --VVLVSHDSRL 678
V+LVSHD L
Sbjct: 325 PQVILVSHDEEL 336
>pdb|3QKT|A Chain A, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|B Chain B, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|C Chain C, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
pdb|3QKT|D Chain D, Rad50 Abc-Atpase With Adjacent Coiled-Coil Region In
Complex With Amp- Pnp
Length = 339
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 316 RPTKSFSGGWRMRISLARALFV------QPTLLLLDEPTNHLD----LRAVLWLEEYLCR 365
RP SGG R+ + LA L + + +LL+LDEPT +LD + + +E YL +
Sbjct: 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 303
Query: 366 WKKTLVVVSHDRDF 379
+ +++VSHD +
Sbjct: 304 IPQ-VILVSHDEEL 316
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 616 PIAKLSGGQKA------RVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGG- 668
P+ LSGG++ R+ + + +L+LDEPT +LD + L ++ +
Sbjct: 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 304
Query: 669 --VVLVSHDSRL 678
V+LVSHD L
Sbjct: 305 PQVILVSHDEEL 316
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 11/74 (14%)
Query: 316 RPTKSFSGGWRMRISLARALFV------QPTLLLLDEPTNHLD----LRAVLWLEEYLCR 365
RP SGG R+ + LA L + + +LL+LDEPT +LD + + +E YL +
Sbjct: 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 112
Query: 366 WKKTLVVVSHDRDF 379
+ +++VSHD +
Sbjct: 113 IPQ-VILVSHDEEL 125
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 616 PIAKLSGGQKA------RVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---T 666
P+ LSGG++ R+ + + +L+LDEPT +LD + L ++ +
Sbjct: 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 113
Query: 667 GGVVLVSHDSRL 678
V+LVSHD L
Sbjct: 114 PQVILVSHDEEL 125
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554
L + + I+ G V GPNG GK+TLL ++ L P +GE+
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212
K +L+ ++ I G GPNG+GK+TLLK ++
Sbjct: 22 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTIS 56
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 34/156 (21%), Positives = 65/156 (41%), Gaps = 37/156 (23%)
Query: 516 VDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTM 575
+D+ + G V ++G NGAGK+T L+ +AG + +G++ + + I H ++ +
Sbjct: 25 IDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ-DITNKPAHVINRXGI 83
Query: 576 EETPVSYLLRLHP----------------DQEGLSKQ--------EAVRAKLGKFGLPSH 611
P R+ P D+EG+ + ++ +L + G
Sbjct: 84 ALVPEGR--RIFPELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG---- 137
Query: 612 NHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPT 647
LSGG++ + S+P +L DEP+
Sbjct: 138 ------GTLSGGEQQXLAIGRALXSRPKLLXXDEPS 167
>pdb|1US8|B Chain B, The Rad50 Signature Motif: Essential To Atp Binding And
Biological Function
Length = 144
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 11/74 (14%)
Query: 316 RPTKSFSGGWRMRISLARALFV------QPTLLLLDEPTNHLD----LRAVLWLEEYLCR 365
RP GG R+ + LA L + + +LL+LDEPT +LD + + +E YL +
Sbjct: 49 RPLTFLRGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 108
Query: 366 WKKTLVVVSHDRDF 379
+ +++VSHD +
Sbjct: 109 IPQ-VILVSHDEEL 121
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 616 PIAKLSGGQKA------RVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---T 666
P+ L GG++ R+ + + +L+LDEPT +LD + L ++ +
Sbjct: 50 PLTFLRGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKI 109
Query: 667 GGVVLVSHDSRL 678
V+LVSHD L
Sbjct: 110 PQVILVSHDEEL 121
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 316 RPTKSFSGGWRMRISLARALFVQPT------LLLLDEPTNHLDL---RAVLWLEEYLCRW 366
RP + SGG R IS++ A+ + +DE + LD + + + L R
Sbjct: 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERL 334
Query: 367 KKTLVVVSHDRDF 379
K +V ++HDR+F
Sbjct: 335 NKVIVFITHDREF 347
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 509 EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL 543
E+ K +D + ++ G R+ IVG GKSTLLN L
Sbjct: 229 EELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRL 263
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 525 RVAIVGPNGAGKSTLLNLLAG 545
RV ++G G GKSTL N+ AG
Sbjct: 8 RVVLIGEQGVGKSTLANIFAG 28
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 525 RVAIVGPNGAGKSTLLNLLAG 545
RV ++G G GKSTL N+ AG
Sbjct: 8 RVVLIGEQGVGKSTLANIFAG 28
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 525 RVAIVGPNGAGKSTLLNLLAG 545
RV ++G G GKSTL N+ AG
Sbjct: 39 RVVLIGEQGVGKSTLANIFAG 59
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 525 RVAIVGPNGAGKSTLLNLLAG 545
RV ++G G GKSTL N+ AG
Sbjct: 8 RVVLIGEQGVGKSTLANIFAG 28
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 523 GTRVAIVGPNGAGKSTLLNLLAG-------DLSPTEGEVRRSQKLRIGRYSQHFVDLLTM 575
G +V I G AGKS+LLN LAG D++ T +V R + + I H +D +
Sbjct: 7 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLR-EHIHIDGMPLHIIDTAGL 65
Query: 576 EE 577
E
Sbjct: 66 RE 67
>pdb|1G8Y|A Chain A, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|B Chain B, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|C Chain C, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|D Chain D, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|E Chain E, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|F Chain F, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|G Chain G, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|H Chain H, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|I Chain I, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|J Chain J, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|K Chain K, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1G8Y|L Chain L, Crystal Structure Of The Hexameric Replicative Helicase
Repa Of Plasmid Rsf1010
pdb|1NLF|A Chain A, Crystal Structure Of Dna Helicase Repa In Complex With
Sulfate At 1.95 A Resolution
pdb|1NLF|B Chain B, Crystal Structure Of Dna Helicase Repa In Complex With
Sulfate At 1.95 A Resolution
pdb|1NLF|C Chain C, Crystal Structure Of Dna Helicase Repa In Complex With
Sulfate At 1.95 A Resolution
pdb|1OLO|A Chain A, Hexameric Replicative Dna Helicase Repa From Plasmid
Rsf1010 - Cubic Crystal Structure
pdb|1OLO|B Chain B, Hexameric Replicative Dna Helicase Repa From Plasmid
Rsf1010 - Cubic Crystal Structure
Length = 279
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 499 IEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558
+E + P D+ L ++ G T A+V P GAGKS L LA ++
Sbjct: 10 LEAFAAAPPPLDYVLPNMVAG----TVGALVSPGGAGKSMLALQLAAQIA------GGPD 59
Query: 559 KLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQE 597
L +G V L E+ P + RLH LS +E
Sbjct: 60 LLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEE 98
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 523 GTRVAIVGPNGAGKSTLLNLLAG-------DLSPTEGEVRRSQKLRIGRYSQHFVDLLTM 575
G +V I G AGKS+LLN LAG D++ T +V R + + I H +D +
Sbjct: 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLR-EHIHIDGMPLHIIDTAGL 62
Query: 576 EE 577
E
Sbjct: 63 RE 64
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 30.0 bits (66), Expect = 4.8, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 523 GTRVAIVGPNGAGKSTLLNLLAG-------DLSPTEGEVRRSQKLRIGRYSQHFVDLLTM 575
G +V I G AGKS+LLN LAG D++ T +V R + + I H +D +
Sbjct: 4 GXKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLR-EHIHIDGXPLHIIDTAGL 62
Query: 576 EE 577
E
Sbjct: 63 RE 64
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 526 VAIVGPNGAGKSTLLNLLAGD----LSPTEGEVR 555
VAIVG GKSTLLN L G +SP G R
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTR 45
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 526 VAIVGPNGAGKSTLLNLLAGD----LSPTEGEVR 555
VAIVG GKSTLLN L G +SP G R
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTR 46
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 306 GLGFTKEMQGRPTKSFSGGWRMRISLARALFVQ---PTLLLLDEPTNHLDLRAVLWLEEY 362
GLG+ + G+P SGG RI LA L T+ +LDEPT L V L+
Sbjct: 718 GLGYLR--LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQ 775
Query: 363 LCRW---KKTLVVVSH 375
L + T++ V H
Sbjct: 776 LVKLVDAGNTVIAVEH 791
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,782,859
Number of Sequences: 62578
Number of extensions: 728462
Number of successful extensions: 2542
Number of sequences better than 100.0: 121
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2067
Number of HSP's gapped (non-prelim): 406
length of query: 723
length of database: 14,973,337
effective HSP length: 106
effective length of query: 617
effective length of database: 8,340,069
effective search space: 5145822573
effective search space used: 5145822573
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)