Query 048654
Match_columns 723
No_of_seqs 690 out of 2969
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 20:28:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iw3_A Elongation factor 3A; a 100.0 1.1E-74 3.7E-79 690.8 43.8 428 165-701 435-978 (986)
2 1yqt_A RNAse L inhibitor; ATP- 100.0 2.3E-72 7.8E-77 643.7 32.1 454 167-712 22-494 (538)
3 3bk7_A ABC transporter ATP-bin 100.0 1.1E-71 3.8E-76 644.6 33.7 457 165-712 83-564 (607)
4 3j16_B RLI1P; ribosome recycli 100.0 1.1E-67 3.8E-72 610.3 37.0 463 170-713 82-561 (608)
5 3ozx_A RNAse L inhibitor; ATP 100.0 1.3E-68 4.3E-73 611.5 28.7 457 170-710 4-476 (538)
6 3g5u_A MCG1178, multidrug resi 100.0 1.5E-65 5.3E-70 639.3 45.0 206 494-711 1029-1258(1284)
7 4f4c_A Multidrug resistance pr 100.0 3.8E-63 1.3E-67 619.2 46.3 205 495-711 1076-1304(1321)
8 3ux8_A Excinuclease ABC, A sub 100.0 1.6E-64 5.4E-69 595.0 30.3 329 302-710 184-639 (670)
9 2vf7_A UVRA2, excinuclease ABC 100.0 2.1E-52 7.2E-57 495.2 38.7 334 296-710 356-826 (842)
10 3pih_A Uvrabc system protein A 100.0 1.9E-48 6.5E-53 464.8 37.1 335 299-711 443-902 (916)
11 2r6f_A Excinuclease ABC subuni 100.0 8.8E-49 3E-53 464.3 29.4 336 296-710 481-941 (972)
12 2ygr_A Uvrabc system protein A 100.0 1.9E-48 6.4E-53 463.1 30.5 338 296-711 498-960 (993)
13 3gfo_A Cobalt import ATP-bindi 100.0 1.2E-43 4E-48 372.9 22.1 209 493-711 5-233 (275)
14 3tui_C Methionine import ATP-b 100.0 1.7E-43 5.7E-48 383.2 23.8 210 492-710 21-252 (366)
15 3tif_A Uncharacterized ABC tra 100.0 1.4E-43 4.7E-48 364.6 19.9 206 495-709 1-232 (235)
16 4g1u_C Hemin import ATP-bindin 100.0 2.2E-42 7.7E-47 361.8 26.9 207 493-710 9-236 (266)
17 1b0u_A Histidine permease; ABC 100.0 6.4E-43 2.2E-47 365.4 21.7 208 493-710 4-241 (262)
18 3tui_C Methionine import ATP-b 100.0 2.4E-42 8.2E-47 374.2 26.8 224 162-406 21-252 (366)
19 2olj_A Amino acid ABC transpor 100.0 1.4E-42 4.9E-47 362.5 23.8 208 494-711 23-248 (263)
20 2olj_A Amino acid ABC transpor 100.0 5.5E-42 1.9E-46 358.0 26.2 220 165-405 24-246 (263)
21 3fvq_A Fe(3+) IONS import ATP- 100.0 1.1E-42 3.8E-47 376.6 21.3 207 494-711 3-228 (359)
22 1b0u_A Histidine permease; ABC 100.0 7.6E-42 2.6E-46 357.2 26.4 223 165-406 6-241 (262)
23 1ji0_A ABC transporter; ATP bi 100.0 7E-42 2.4E-46 353.0 25.4 206 493-710 4-227 (240)
24 2pcj_A ABC transporter, lipopr 100.0 3.3E-42 1.1E-46 351.9 22.6 197 494-701 3-219 (224)
25 3gfo_A Cobalt import ATP-bindi 100.0 5.6E-42 1.9E-46 360.1 24.8 222 164-406 6-232 (275)
26 2pcj_A ABC transporter, lipopr 100.0 1.2E-41 4.3E-46 347.6 26.6 212 165-397 4-219 (224)
27 3rlf_A Maltose/maltodextrin im 100.0 3.6E-42 1.2E-46 375.0 23.5 206 495-711 3-223 (381)
28 1vpl_A ABC transporter, ATP-bi 100.0 3.4E-42 1.2E-46 358.4 21.7 208 493-711 13-235 (256)
29 3tif_A Uncharacterized ABC tra 100.0 1.2E-41 4.1E-46 350.2 25.4 221 165-405 1-232 (235)
30 1g6h_A High-affinity branched- 100.0 2.2E-42 7.7E-47 360.3 20.1 206 493-708 5-239 (257)
31 1z47_A CYSA, putative ABC-tran 100.0 1.1E-41 3.8E-46 368.9 24.5 209 492-711 11-235 (355)
32 4g1u_C Hemin import ATP-bindin 100.0 8E-42 2.7E-46 357.7 22.3 216 164-405 10-235 (266)
33 3rlf_A Maltose/maltodextrin im 100.0 1.3E-41 4.5E-46 370.6 24.8 215 165-405 3-221 (381)
34 2ihy_A ABC transporter, ATP-bi 100.0 5.6E-42 1.9E-46 361.1 20.1 210 492-710 18-251 (279)
35 2onk_A Molybdate/tungstate ABC 100.0 1.8E-41 6.3E-46 349.7 22.7 200 495-711 1-216 (240)
36 2it1_A 362AA long hypothetical 100.0 2.1E-41 7.1E-46 368.0 24.3 206 495-711 3-223 (362)
37 1vpl_A ABC transporter, ATP-bi 100.0 3.3E-41 1.1E-45 350.9 24.8 219 162-405 12-233 (256)
38 2yz2_A Putative ABC transporte 100.0 2.2E-41 7.7E-46 354.5 23.6 209 495-711 2-227 (266)
39 1g6h_A High-affinity branched- 100.0 1.1E-41 3.8E-46 355.1 20.8 219 164-404 6-239 (257)
40 3d31_A Sulfate/molybdate ABC t 100.0 2.9E-41 1E-45 365.2 24.3 201 495-710 1-216 (348)
41 3fvq_A Fe(3+) IONS import ATP- 100.0 1.6E-41 5.3E-46 367.6 22.0 219 165-405 4-226 (359)
42 2yyz_A Sugar ABC transporter, 100.0 4.1E-41 1.4E-45 365.2 24.2 203 495-711 3-223 (359)
43 1g29_1 MALK, maltose transport 100.0 3.9E-41 1.3E-45 367.6 23.7 206 495-711 3-229 (372)
44 2zu0_C Probable ATP-dependent 100.0 1.2E-40 4E-45 349.2 25.6 226 161-405 16-252 (267)
45 1ji0_A ABC transporter; ATP bi 100.0 6.7E-41 2.3E-45 345.7 22.6 217 165-405 6-226 (240)
46 1oxx_K GLCV, glucose, ABC tran 100.0 2.3E-41 7.9E-46 367.1 19.7 203 495-711 3-230 (353)
47 1v43_A Sugar-binding transport 100.0 8E-41 2.7E-45 364.6 23.8 203 495-711 11-231 (372)
48 2it1_A 362AA long hypothetical 100.0 1.1E-40 3.9E-45 362.1 24.8 215 165-405 3-221 (362)
49 2nq2_C Hypothetical ABC transp 100.0 1.2E-40 4E-45 346.4 23.7 204 494-710 3-216 (253)
50 2d2e_A SUFC protein; ABC-ATPas 100.0 1.2E-40 4.3E-45 345.8 23.8 220 165-403 3-229 (250)
51 1z47_A CYSA, putative ABC-tran 100.0 1.1E-40 3.8E-45 361.0 24.0 218 162-405 11-233 (355)
52 1g29_1 MALK, maltose transport 100.0 2.1E-40 7.3E-45 361.8 24.8 215 165-405 3-227 (372)
53 2yyz_A Sugar ABC transporter, 100.0 9.1E-41 3.1E-45 362.5 21.6 215 165-405 3-221 (359)
54 2zu0_C Probable ATP-dependent 100.0 1.3E-40 4.4E-45 348.8 21.4 210 492-710 17-253 (267)
55 2pjz_A Hypothetical protein ST 100.0 1E-40 3.5E-45 348.5 19.8 201 495-710 1-214 (263)
56 2ff7_A Alpha-hemolysin translo 100.0 2.4E-40 8.2E-45 342.9 21.6 203 495-711 7-232 (247)
57 1v43_A Sugar-binding transport 100.0 2.1E-40 7.3E-45 361.2 22.3 217 163-405 9-229 (372)
58 2d2e_A SUFC protein; ABC-ATPas 100.0 9.8E-41 3.4E-45 346.6 18.2 205 495-707 3-229 (250)
59 2ixe_A Antigen peptide transpo 100.0 5.2E-40 1.8E-44 344.9 23.3 207 493-711 14-245 (271)
60 3d31_A Sulfate/molybdate ABC t 100.0 5.2E-40 1.8E-44 355.4 24.0 211 165-405 1-215 (348)
61 2ihy_A ABC transporter, ATP-bi 100.0 1.7E-40 5.9E-45 349.8 19.5 223 162-405 18-250 (279)
62 1oxx_K GLCV, glucose, ABC tran 100.0 1.3E-40 4.5E-45 361.2 18.9 217 165-405 3-228 (353)
63 2nq2_C Hypothetical ABC transp 100.0 6.2E-40 2.1E-44 341.0 22.1 199 165-405 4-215 (253)
64 3nh6_A ATP-binding cassette SU 100.0 8E-40 2.7E-44 348.2 22.7 202 494-711 52-277 (306)
65 1mv5_A LMRA, multidrug resista 100.0 5.5E-40 1.9E-44 339.5 20.9 203 495-711 1-226 (243)
66 2qi9_C Vitamin B12 import ATP- 100.0 1.4E-39 4.8E-44 337.3 23.8 198 494-710 3-221 (249)
67 2yz2_A Putative ABC transporte 100.0 5.1E-40 1.7E-44 344.2 19.8 215 165-405 2-225 (266)
68 2pze_A Cystic fibrosis transme 100.0 1.7E-39 5.8E-44 332.9 22.8 201 494-711 5-218 (229)
69 2onk_A Molybdate/tungstate ABC 100.0 1.1E-39 3.8E-44 336.4 21.4 210 165-405 1-214 (240)
70 2cbz_A Multidrug resistance-as 100.0 1.4E-39 4.9E-44 335.2 19.0 203 495-711 3-217 (237)
71 1sgw_A Putative ABC transporte 100.0 6.4E-40 2.2E-44 332.2 15.3 192 493-699 8-210 (214)
72 2ff7_A Alpha-hemolysin translo 100.0 5.8E-39 2E-43 332.5 22.5 211 165-406 7-231 (247)
73 2ghi_A Transport protein; mult 100.0 5.4E-39 1.9E-43 335.2 21.6 203 494-711 16-242 (260)
74 3nh6_A ATP-binding cassette SU 100.0 7.5E-39 2.6E-43 340.7 23.0 215 164-406 52-276 (306)
75 2ixe_A Antigen peptide transpo 100.0 3.5E-39 1.2E-43 338.6 20.2 214 164-405 15-243 (271)
76 2pjz_A Hypothetical protein ST 100.0 7.7E-39 2.6E-43 334.3 20.2 207 165-405 1-213 (263)
77 2qi9_C Vitamin B12 import ATP- 100.0 1.3E-38 4.4E-43 330.1 18.2 207 165-405 4-220 (249)
78 2ghi_A Transport protein; mult 100.0 4.9E-38 1.7E-42 328.0 20.1 210 164-405 16-240 (260)
79 3gd7_A Fusion complex of cysti 100.0 3.6E-38 1.2E-42 345.8 19.7 202 493-711 17-242 (390)
80 1mv5_A LMRA, multidrug resista 100.0 1.1E-38 3.6E-43 329.9 14.6 212 165-406 1-225 (243)
81 2cbz_A Multidrug resistance-as 100.0 7.6E-38 2.6E-42 322.3 18.7 193 165-405 3-215 (237)
82 2pze_A Cystic fibrosis transme 100.0 1.7E-37 5.9E-42 318.0 21.1 200 165-406 6-217 (229)
83 1tf7_A KAIC; homohexamer, hexa 100.0 6.1E-39 2.1E-43 367.2 10.6 392 166-698 13-444 (525)
84 1sgw_A Putative ABC transporte 100.0 1.8E-38 6.2E-43 321.6 12.3 199 164-395 9-210 (214)
85 3gd7_A Fusion complex of cysti 100.0 1.5E-37 5.2E-42 340.7 17.6 208 164-405 18-240 (390)
86 2bbs_A Cystic fibrosis transme 100.0 6.3E-37 2.2E-41 324.1 18.5 196 494-711 39-247 (290)
87 3b5x_A Lipid A export ATP-bind 100.0 4.4E-36 1.5E-40 347.5 24.4 205 494-711 340-567 (582)
88 4a82_A Cystic fibrosis transme 100.0 4E-36 1.4E-40 347.5 21.9 203 494-711 338-564 (578)
89 3b60_A Lipid A export ATP-bind 100.0 4.3E-36 1.5E-40 347.7 22.0 205 494-711 340-567 (582)
90 3qf4_A ABC transporter, ATP-bi 100.0 1.4E-35 4.7E-40 343.4 24.4 203 494-711 340-566 (587)
91 2yl4_A ATP-binding cassette SU 100.0 1.9E-35 6.6E-40 343.0 23.7 205 496-711 342-570 (595)
92 3qf4_B Uncharacterized ABC tra 100.0 7E-36 2.4E-40 346.7 18.9 203 494-711 353-578 (598)
93 3qf4_A ABC transporter, ATP-bi 100.0 1E-34 3.5E-39 336.1 25.3 216 164-407 340-566 (587)
94 3b5x_A Lipid A export ATP-bind 100.0 6.4E-35 2.2E-39 337.8 21.6 213 164-406 340-566 (582)
95 4a82_A Cystic fibrosis transme 100.0 1.1E-34 3.8E-39 335.5 23.2 211 164-406 338-563 (578)
96 2yl4_A ATP-binding cassette SU 100.0 3.2E-34 1.1E-38 332.8 25.9 215 164-406 339-569 (595)
97 3b60_A Lipid A export ATP-bind 100.0 1.5E-34 5.1E-39 334.8 22.4 213 164-406 340-566 (582)
98 2bbs_A Cystic fibrosis transme 100.0 8.3E-35 2.9E-39 307.8 18.4 196 165-405 40-245 (290)
99 3qf4_B Uncharacterized ABC tra 100.0 1E-34 3.4E-39 337.0 20.6 213 164-407 353-578 (598)
100 1yqt_A RNAse L inhibitor; ATP- 100.0 4.2E-33 1.4E-37 318.9 21.7 196 164-406 286-492 (538)
101 3bk7_A ABC transporter ATP-bin 100.0 5.3E-33 1.8E-37 321.4 22.0 196 164-406 356-562 (607)
102 2iw3_A Elongation factor 3A; a 100.0 8.7E-33 3E-37 330.3 23.7 200 495-711 435-635 (986)
103 3ozx_A RNAse L inhibitor; ATP 100.0 4.6E-33 1.6E-37 318.0 18.0 184 164-392 268-461 (538)
104 3g5u_A MCG1178, multidrug resi 100.0 8.1E-33 2.8E-37 345.1 19.1 203 494-711 386-613 (1284)
105 4f4c_A Multidrug resistance pr 100.0 1.9E-32 6.4E-37 342.6 18.8 203 494-710 414-640 (1321)
106 3j16_B RLI1P; ribosome recycli 100.0 6.5E-32 2.2E-36 311.9 18.9 193 169-407 350-559 (608)
107 3ux8_A Excinuclease ABC, A sub 100.0 1.2E-30 4.3E-35 306.7 16.6 193 511-711 32-298 (670)
108 2vf7_A UVRA2, excinuclease ABC 100.0 3.3E-28 1.1E-32 288.5 18.7 108 297-406 707-826 (842)
109 3pih_A Uvrabc system protein A 99.9 5.4E-27 1.8E-31 280.2 24.6 110 296-407 781-902 (916)
110 2npi_A Protein CLP1; CLP1-PCF1 99.9 8.3E-31 2.8E-35 293.8 -10.5 194 493-710 116-337 (460)
111 2r6f_A Excinuclease ABC subuni 99.9 1.5E-26 5.1E-31 274.6 24.0 108 298-407 823-942 (972)
112 4aby_A DNA repair protein RECN 99.9 5.9E-27 2E-31 259.7 17.5 77 321-398 296-380 (415)
113 2ygr_A Uvrabc system protein A 99.9 1.6E-26 5.4E-31 275.4 21.9 107 298-406 841-959 (993)
114 4aby_A DNA repair protein RECN 99.9 1.9E-26 6.7E-31 255.5 18.8 76 620-701 296-379 (415)
115 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 6.9E-25 2.4E-29 239.6 16.1 81 315-396 274-363 (365)
116 2npi_A Protein CLP1; CLP1-PCF1 99.9 2.3E-28 7.8E-33 274.0 -16.4 200 163-405 116-336 (460)
117 3b85_A Phosphate starvation-in 99.9 1.8E-26 6.3E-31 232.6 -2.8 138 511-680 14-162 (208)
118 4gp7_A Metallophosphoesterase; 99.9 4.6E-25 1.6E-29 215.3 6.6 76 306-383 71-165 (171)
119 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.9E-24 6.5E-29 236.1 11.7 80 615-700 275-363 (365)
120 4gp7_A Metallophosphoesterase; 99.9 6.3E-25 2.1E-29 214.3 5.8 147 515-683 1-166 (171)
121 1ye8_A Protein THEP1, hypothet 99.9 1.2E-23 4.3E-28 206.8 7.5 157 525-717 2-176 (178)
122 1e69_A Chromosome segregation 99.9 3.7E-22 1.2E-26 214.4 18.5 89 314-403 213-309 (322)
123 1e69_A Chromosome segregation 99.9 2.7E-22 9.1E-27 215.5 13.1 89 614-708 214-310 (322)
124 3b85_A Phosphate starvation-in 99.9 8.7E-25 3E-29 220.3 -7.4 160 174-394 9-171 (208)
125 3qkt_A DNA double-strand break 99.9 1.2E-20 4E-25 204.1 19.6 80 315-395 243-333 (339)
126 1ye8_A Protein THEP1, hypothet 99.9 2.8E-22 9.6E-27 197.1 5.9 80 314-397 70-159 (178)
127 1tq4_A IIGP1, interferon-induc 99.8 6.4E-24 2.2E-28 234.2 -8.5 160 511-684 37-245 (413)
128 2o5v_A DNA replication and rep 99.8 6.4E-20 2.2E-24 199.2 21.8 86 315-405 259-354 (359)
129 2v9p_A Replication protein E1; 99.8 5.7E-24 1.9E-28 225.7 -18.4 162 495-709 101-264 (305)
130 2v9p_A Replication protein E1; 99.8 3.7E-24 1.3E-28 227.1 -21.2 162 165-405 101-264 (305)
131 3b9q_A Chloroplast SRP recepto 99.8 3.6E-21 1.2E-25 204.7 0.0 165 514-699 91-284 (302)
132 3qkt_A DNA double-strand break 99.8 3E-19 1E-23 193.0 14.6 80 614-699 243-333 (339)
133 1tq4_A IIGP1, interferon-induc 99.8 2E-22 6.9E-27 222.3 -12.1 173 178-394 36-255 (413)
134 1tf7_A KAIC; homohexamer, hexa 99.8 4E-20 1.4E-24 211.4 4.5 152 185-394 275-444 (525)
135 2o5v_A DNA replication and rep 99.8 1.1E-18 3.8E-23 189.4 14.3 85 615-709 260-354 (359)
136 3aez_A Pantothenate kinase; tr 99.8 5.2E-22 1.8E-26 212.1 -12.1 164 495-680 43-232 (312)
137 2pt7_A CAG-ALFA; ATPase, prote 99.8 2.1E-20 7.1E-25 201.3 -0.2 130 512-699 160-292 (330)
138 2og2_A Putative signal recogni 99.8 3.1E-20 1.1E-24 201.4 0.9 165 514-699 148-341 (359)
139 1z6g_A Guanylate kinase; struc 99.8 7.1E-22 2.4E-26 200.4 -11.7 161 512-683 12-201 (218)
140 1znw_A Guanylate kinase, GMP k 99.8 4.6E-22 1.6E-26 199.8 -13.4 180 178-391 9-202 (207)
141 1znw_A Guanylate kinase, GMP k 99.8 4.2E-22 1.4E-26 200.1 -14.6 165 511-695 10-202 (207)
142 2o8b_B DNA mismatch repair pro 99.8 2.9E-19 9.8E-24 217.1 7.2 165 493-700 748-930 (1022)
143 1cr0_A DNA primase/helicase; R 99.8 1.1E-18 3.7E-23 184.6 10.3 181 178-395 22-237 (296)
144 2dpy_A FLII, flagellum-specifi 99.8 1.9E-20 6.6E-25 208.6 -3.4 173 493-701 129-335 (438)
145 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 2.2E-18 7.7E-23 164.1 10.9 80 315-395 52-142 (148)
146 2i3b_A HCR-ntpase, human cance 99.8 5.5E-20 1.9E-24 182.5 -0.5 160 523-720 1-187 (189)
147 2o8b_B DNA mismatch repair pro 99.7 3.9E-19 1.3E-23 215.9 5.6 165 163-396 748-930 (1022)
148 1w1w_A Structural maintenance 99.7 1.1E-17 3.8E-22 186.5 16.1 75 316-391 329-410 (430)
149 2obl_A ESCN; ATPase, hydrolase 99.7 2.6E-20 8.9E-25 201.6 -5.1 189 493-706 43-250 (347)
150 3b9q_A Chloroplast SRP recepto 99.7 1.6E-19 5.4E-24 192.0 -0.1 183 180-395 89-284 (302)
151 2obl_A ESCN; ATPase, hydrolase 99.7 2.7E-20 9.2E-25 201.5 -6.4 192 164-397 44-246 (347)
152 2pt7_A CAG-ALFA; ATPase, prote 99.7 4.1E-20 1.4E-24 199.0 -5.3 133 179-394 159-291 (330)
153 3aez_A Pantothenate kinase; tr 99.7 1.4E-21 4.8E-26 208.7 -16.8 180 165-394 43-246 (312)
154 1z6g_A Guanylate kinase; struc 99.7 3.8E-21 1.3E-25 195.0 -13.9 149 179-366 11-173 (218)
155 3thx_A DNA mismatch repair pro 99.7 6.8E-18 2.3E-22 202.7 11.4 153 165-397 631-804 (934)
156 3sop_A Neuronal-specific septi 99.7 1.5E-19 5.2E-24 189.2 -2.9 138 525-677 4-151 (270)
157 1ewq_A DNA mismatch repair pro 99.7 6E-18 2E-22 199.8 9.4 146 494-680 549-702 (765)
158 1cr0_A DNA primase/helicase; R 99.7 8.6E-18 2.9E-22 177.7 9.4 171 512-699 24-237 (296)
159 3thx_A DNA mismatch repair pro 99.7 8.8E-18 3E-22 201.8 10.1 156 494-700 630-803 (934)
160 2dpy_A FLII, flagellum-specifi 99.7 1.5E-19 5E-24 201.5 -5.1 192 164-397 130-335 (438)
161 2og2_A Putative signal recogni 99.7 1.4E-18 4.9E-23 188.3 1.2 181 182-395 148-341 (359)
162 2eyu_A Twitching motility prot 99.7 1.3E-18 4.5E-23 181.2 0.5 124 512-684 16-140 (261)
163 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 2.8E-17 9.7E-22 156.4 9.7 80 614-699 52-142 (148)
164 2ehv_A Hypothetical protein PH 99.7 5.9E-18 2E-22 173.3 5.2 72 321-392 118-207 (251)
165 3thx_B DNA mismatch repair pro 99.7 2E-17 6.7E-22 198.2 9.9 151 165-385 640-803 (918)
166 3thx_B DNA mismatch repair pro 99.7 5.1E-18 1.8E-22 203.3 2.5 153 495-684 640-803 (918)
167 4a74_A DNA repair and recombin 99.7 6E-17 2.1E-21 163.6 9.6 72 322-393 101-200 (231)
168 2jeo_A Uridine-cytidine kinase 99.7 2.8E-18 9.6E-23 176.7 -0.6 157 510-683 12-173 (245)
169 2ehv_A Hypothetical protein PH 99.7 2.4E-17 8.2E-22 168.7 5.5 171 495-695 6-206 (251)
170 1ewq_A DNA mismatch repair pro 99.6 1.3E-16 4.5E-21 188.4 9.2 145 165-384 550-704 (765)
171 2w0m_A SSO2452; RECA, SSPF, un 99.6 1.9E-16 6.5E-21 159.8 9.2 169 177-394 8-193 (235)
172 4a74_A DNA repair and recombin 99.6 1.9E-16 6.4E-21 160.0 9.0 152 519-697 21-200 (231)
173 2eyu_A Twitching motility prot 99.6 8.2E-18 2.8E-22 175.2 -2.5 141 166-391 6-146 (261)
174 3kta_B Chromosome segregation 99.6 2.2E-15 7.4E-20 147.1 14.1 90 315-405 59-156 (173)
175 2w0m_A SSO2452; RECA, SSPF, un 99.6 4.9E-16 1.7E-20 156.8 8.9 164 511-697 10-192 (235)
176 2jeo_A Uridine-cytidine kinase 99.6 2.2E-17 7.7E-22 170.0 -1.8 164 175-387 9-176 (245)
177 1pui_A ENGB, probable GTP-bind 99.6 1.1E-16 3.9E-21 159.4 2.2 166 495-665 3-196 (210)
178 3asz_A Uridine kinase; cytidin 99.6 4.5E-18 1.5E-22 170.5 -8.5 145 520-677 3-162 (211)
179 2i3b_A HCR-ntpase, human cance 99.6 4.9E-17 1.7E-21 161.2 -2.4 82 315-398 78-168 (189)
180 1nlf_A Regulatory protein REPA 99.6 5.6E-15 1.9E-19 154.9 11.5 78 300-381 99-185 (279)
181 3kta_B Chromosome segregation 99.6 1.7E-14 6E-19 140.7 14.2 93 615-713 60-160 (173)
182 1pui_A ENGB, probable GTP-bind 99.6 4.6E-16 1.6E-20 154.9 2.5 179 165-366 3-196 (210)
183 2qnr_A Septin-2, protein NEDD5 99.6 7.5E-17 2.6E-21 171.4 -3.8 154 499-677 2-168 (301)
184 1nlf_A Regulatory protein REPA 99.6 8.8E-15 3E-19 153.4 11.5 147 519-680 26-185 (279)
185 3jvv_A Twitching mobility prot 99.5 5.3E-16 1.8E-20 168.4 1.2 143 500-694 93-243 (356)
186 1wb9_A DNA mismatch repair pro 99.5 4.5E-15 1.6E-19 176.2 8.1 161 165-395 577-747 (800)
187 3sop_A Neuronal-specific septi 99.5 2.7E-17 9.2E-22 172.1 -9.9 60 316-380 94-153 (270)
188 2cvh_A DNA repair and recombin 99.5 7.8E-15 2.7E-19 147.0 8.5 150 179-393 7-185 (220)
189 4ad8_A DNA repair protein RECN 99.5 8.6E-15 2.9E-19 166.9 9.5 78 316-394 392-474 (517)
190 1wb9_A DNA mismatch repair pro 99.5 1.8E-15 6E-20 179.8 3.6 137 510-684 595-737 (800)
191 3asz_A Uridine kinase; cytidin 99.5 1.4E-17 4.7E-22 166.9 -14.2 144 188-377 3-161 (211)
192 1rj9_A FTSY, signal recognitio 99.5 3.2E-15 1.1E-19 158.9 2.1 161 522-699 101-285 (304)
193 3szr_A Interferon-induced GTP- 99.5 1.2E-15 4.1E-20 177.0 -1.8 173 494-700 9-227 (608)
194 2qnr_A Septin-2, protein NEDD5 99.5 2.7E-16 9.4E-21 167.1 -7.4 164 169-378 2-168 (301)
195 4ad8_A DNA repair protein RECN 99.5 4.1E-14 1.4E-18 161.3 9.8 77 615-697 392-473 (517)
196 2qag_C Septin-7; cell cycle, c 99.5 8.2E-15 2.8E-19 162.1 1.7 156 494-677 10-178 (418)
197 3jvv_A Twitching mobility prot 99.5 9.2E-15 3.2E-19 158.6 1.9 58 330-392 188-245 (356)
198 1pzn_A RAD51, DNA repair and r 99.5 3.1E-14 1.1E-18 154.3 6.1 160 178-396 117-305 (349)
199 2cvh_A DNA repair and recombin 99.5 1.1E-13 3.6E-18 138.7 9.3 149 512-697 8-185 (220)
200 3auy_A DNA double-strand break 99.4 3.5E-13 1.2E-17 147.2 12.0 75 316-391 276-359 (371)
201 1pzn_A RAD51, DNA repair and r 99.4 1.4E-13 4.6E-18 149.3 6.4 141 512-680 119-290 (349)
202 2qag_C Septin-7; cell cycle, c 99.4 4.9E-15 1.7E-19 163.9 -5.8 164 165-378 11-178 (418)
203 1s96_A Guanylate kinase, GMP k 99.4 1E-13 3.5E-18 140.5 2.6 145 516-713 9-162 (219)
204 2ewv_A Twitching motility prot 99.4 1.5E-13 5.1E-18 150.2 3.8 123 512-683 127-250 (372)
205 1n0w_A DNA repair protein RAD5 99.3 5.3E-12 1.8E-16 128.3 13.7 28 187-214 20-47 (243)
206 2gza_A Type IV secretion syste 99.3 4.9E-14 1.7E-18 153.4 -1.7 152 497-698 137-303 (361)
207 3auy_A DNA double-strand break 99.3 2.5E-12 8.4E-17 140.5 11.2 78 615-698 276-363 (371)
208 1zp6_A Hypothetical protein AT 99.3 2.1E-14 7E-19 141.2 -6.9 143 519-675 5-159 (191)
209 1rj9_A FTSY, signal recognitio 99.3 5.4E-12 1.8E-16 134.0 10.8 155 190-378 101-259 (304)
210 1n0w_A DNA repair protein RAD5 99.3 8.1E-12 2.8E-16 126.9 11.5 145 519-697 20-209 (243)
211 1lw7_A Transcriptional regulat 99.3 3.8E-14 1.3E-18 154.5 -8.2 155 513-683 158-335 (365)
212 3szr_A Interferon-induced GTP- 99.3 3E-14 1E-18 165.3 -9.7 181 165-394 10-225 (608)
213 1lw7_A Transcriptional regulat 99.3 2.1E-14 7.3E-19 156.5 -10.9 72 319-391 257-342 (365)
214 1w1w_A Structural maintenance 99.3 1.2E-11 4.2E-16 137.6 11.1 75 615-695 329-410 (430)
215 2ewv_A Twitching motility prot 99.2 1.2E-12 4E-17 143.1 1.0 131 179-390 126-256 (372)
216 1s96_A Guanylate kinase, GMP k 99.2 2.7E-12 9.3E-17 130.0 3.2 59 332-406 101-159 (219)
217 2bbw_A Adenylate kinase 4, AK4 99.2 6.7E-14 2.3E-18 143.8 -8.8 135 522-666 26-197 (246)
218 2qag_B Septin-6, protein NEDD5 99.2 3.5E-12 1.2E-16 140.7 4.1 168 495-676 16-219 (427)
219 1udx_A The GTP-binding protein 99.2 2.1E-12 7E-17 142.8 2.2 150 513-673 147-305 (416)
220 1ls1_A Signal recognition part 99.2 2.5E-13 8.6E-18 143.8 -4.9 126 514-673 91-219 (295)
221 2qag_B Septin-6, protein NEDD5 99.2 1.4E-11 4.7E-16 135.9 5.5 173 165-376 16-218 (427)
222 3ec2_A DNA replication protein 99.2 4E-11 1.4E-15 116.8 7.9 42 337-378 99-144 (180)
223 3lda_A DNA repair protein RAD5 99.2 1.2E-10 4.1E-15 128.1 12.6 57 337-393 272-363 (400)
224 2bdt_A BH3686; alpha-beta prot 99.2 6.4E-14 2.2E-18 137.8 -12.4 157 523-709 2-182 (189)
225 3ec2_A DNA replication protein 99.1 1.7E-11 5.8E-16 119.4 4.7 108 517-676 32-143 (180)
226 2qm8_A GTPase/ATPase; G protei 99.1 7.5E-14 2.6E-18 150.6 -13.6 164 495-665 29-258 (337)
227 1htw_A HI0065; nucleotide-bind 99.1 7.2E-13 2.5E-17 127.4 -6.4 58 499-559 11-68 (158)
228 1zp6_A Hypothetical protein AT 99.1 1.1E-12 3.6E-17 128.8 -5.8 43 316-366 105-147 (191)
229 2kjq_A DNAA-related protein; s 99.1 4.3E-11 1.5E-15 113.7 5.5 91 512-675 30-124 (149)
230 1sxj_E Activator 1 40 kDa subu 99.1 1.1E-10 3.7E-15 125.7 9.0 127 525-678 38-176 (354)
231 2rcn_A Probable GTPase ENGC; Y 99.1 3.6E-11 1.2E-15 130.0 4.7 111 513-634 206-328 (358)
232 2gza_A Type IV secretion syste 99.1 1.6E-12 5.5E-17 141.5 -6.2 153 167-394 137-303 (361)
233 3lda_A DNA repair protein RAD5 99.1 3.1E-10 1E-14 124.8 11.8 34 519-552 174-209 (400)
234 2bdt_A BH3686; alpha-beta prot 99.1 3.9E-14 1.3E-18 139.3 -17.6 76 322-404 96-181 (189)
235 2yhs_A FTSY, cell division pro 99.1 7E-12 2.4E-16 140.1 -2.1 44 514-557 284-327 (503)
236 1htw_A HI0065; nucleotide-bind 99.1 2.3E-12 7.7E-17 123.9 -6.2 53 168-221 10-62 (158)
237 2bbw_A Adenylate kinase 4, AK4 99.0 7.9E-12 2.7E-16 128.3 -2.7 46 314-366 146-196 (246)
238 1nij_A Hypothetical protein YJ 99.0 2.1E-13 7E-18 146.0 -15.3 53 619-682 141-195 (318)
239 3e70_C DPA, signal recognition 99.0 4.1E-11 1.4E-15 128.5 1.8 167 520-714 126-323 (328)
240 2oap_1 GSPE-2, type II secreti 99.0 9.4E-13 3.2E-17 149.3 -11.7 161 511-684 248-458 (511)
241 2f1r_A Molybdopterin-guanine d 99.0 2.4E-12 8.2E-17 125.3 -7.6 120 524-664 3-158 (171)
242 1p9r_A General secretion pathw 99.0 4.2E-13 1.4E-17 148.5 -15.6 138 495-643 143-315 (418)
243 3c8u_A Fructokinase; YP_612366 99.0 3.2E-12 1.1E-16 128.0 -7.9 141 520-683 19-166 (208)
244 2kjq_A DNAA-related protein; s 99.0 3E-10 1E-14 107.9 6.1 42 334-376 79-124 (149)
245 1nij_A Hypothetical protein YJ 99.0 2E-12 6.9E-17 138.3 -10.3 53 320-383 141-195 (318)
246 1udx_A The GTP-binding protein 99.0 3E-11 1E-15 133.4 -1.4 57 315-375 247-306 (416)
247 1vma_A Cell division protein F 98.9 7.4E-10 2.5E-14 117.6 7.3 98 516-648 97-197 (306)
248 1odf_A YGR205W, hypothetical 3 98.9 4.5E-11 1.6E-15 126.1 -2.5 125 521-653 29-168 (290)
249 3e70_C DPA, signal recognition 98.9 5.1E-10 1.7E-14 120.0 5.2 170 188-395 126-306 (328)
250 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 1.1E-11 3.6E-16 135.9 -8.7 156 519-707 16-209 (392)
251 1ls1_A Signal recognition part 98.9 1.6E-09 5.5E-14 114.5 7.8 131 166-365 77-208 (295)
252 1odf_A YGR205W, hypothetical 3 98.9 4.8E-11 1.6E-15 125.9 -4.5 39 316-354 130-168 (290)
253 2px0_A Flagellar biosynthesis 98.9 3E-09 1E-13 112.5 9.1 136 521-700 103-245 (296)
254 3euj_A Chromosome partition pr 98.9 9.4E-10 3.2E-14 123.2 4.5 46 512-558 19-64 (483)
255 2dr3_A UPF0273 protein PH0284; 98.9 1.1E-08 3.6E-13 103.9 11.8 56 337-392 127-196 (247)
256 3c8u_A Fructokinase; YP_612366 98.8 2.9E-11 9.8E-16 121.0 -7.4 30 188-217 19-48 (208)
257 1p9r_A General secretion pathw 98.8 5.1E-12 1.7E-16 139.8 -14.4 63 165-231 143-205 (418)
258 1sxj_E Activator 1 40 kDa subu 98.8 6.9E-09 2.4E-13 111.5 10.5 44 335-379 131-176 (354)
259 2yv5_A YJEQ protein; hydrolase 98.8 2.6E-10 8.9E-15 121.0 -1.6 111 520-632 162-300 (302)
260 1in4_A RUVB, holliday junction 98.8 3.1E-12 1.1E-16 137.6 -16.8 165 498-684 21-210 (334)
261 2f1r_A Molybdopterin-guanine d 98.8 4.5E-11 1.5E-15 116.3 -7.0 39 192-230 3-42 (171)
262 1vma_A Cell division protein F 98.8 7E-09 2.4E-13 110.1 9.1 98 184-349 97-197 (306)
263 2px0_A Flagellar biosynthesis 98.8 8.2E-09 2.8E-13 109.1 8.4 137 189-397 103-246 (296)
264 2yhs_A FTSY, cell division pro 98.8 2.3E-08 7.7E-13 111.9 11.8 48 181-230 283-330 (503)
265 2rcn_A Probable GTPase ENGC; Y 98.8 2.1E-09 7.1E-14 116.2 2.9 121 181-335 206-328 (358)
266 2ius_A DNA translocase FTSK; n 98.7 1.3E-09 4.4E-14 123.0 0.5 176 183-390 159-362 (512)
267 2dr3_A UPF0273 protein PH0284; 98.7 8E-08 2.7E-12 97.3 13.0 56 636-696 127-196 (247)
268 2x8a_A Nuclear valosin-contain 98.7 2.6E-11 9E-16 126.9 -13.5 150 175-365 30-192 (274)
269 2x8a_A Nuclear valosin-contain 98.7 3.9E-11 1.3E-15 125.6 -12.9 132 511-663 34-191 (274)
270 2zr9_A Protein RECA, recombina 98.7 7.1E-08 2.4E-12 104.2 11.0 70 327-396 126-233 (349)
271 1sq5_A Pantothenate kinase; P- 98.6 4.5E-10 1.5E-14 119.4 -6.5 58 495-556 37-115 (308)
272 2r6a_A DNAB helicase, replicat 98.6 6.1E-08 2.1E-12 108.5 10.5 178 178-394 190-400 (454)
273 1ypw_A Transitional endoplasmi 98.6 6.2E-09 2.1E-13 124.5 2.3 33 516-548 504-536 (806)
274 2r6a_A DNAB helicase, replicat 98.6 2.8E-08 9.6E-13 111.2 6.2 168 512-699 192-401 (454)
275 3euj_A Chromosome partition pr 98.6 1.8E-08 6E-13 112.9 3.7 72 616-695 376-464 (483)
276 3lnc_A Guanylate kinase, GMP k 98.6 1.3E-08 4.5E-13 103.1 2.4 37 512-548 16-53 (231)
277 1u0l_A Probable GTPase ENGC; p 98.6 3.4E-09 1.2E-13 112.2 -2.6 38 519-556 165-202 (301)
278 1oix_A RAS-related protein RAB 98.5 3.8E-08 1.3E-12 96.5 4.2 37 626-664 152-188 (191)
279 2qm8_A GTPase/ATPase; G protei 98.5 1.1E-09 3.8E-14 117.9 -7.7 65 165-231 29-93 (337)
280 3k1j_A LON protease, ATP-depen 98.5 7.8E-09 2.7E-13 119.9 -1.5 154 502-664 41-227 (604)
281 1in4_A RUVB, holliday junction 98.5 8.8E-11 3E-15 126.3 -16.7 180 165-386 18-211 (334)
282 3nwj_A ATSK2; P loop, shikimat 98.5 6.8E-09 2.3E-13 107.0 -1.9 51 164-214 16-71 (250)
283 1ni3_A YCHF GTPase, YCHF GTP-b 98.5 1.1E-09 3.7E-14 120.0 -9.3 73 315-402 128-208 (392)
284 1sq5_A Pantothenate kinase; P- 98.5 2.8E-09 9.6E-14 113.3 -6.2 60 165-226 37-115 (308)
285 3lnc_A Guanylate kinase, GMP k 98.5 5.8E-08 2E-12 98.3 3.2 38 178-215 14-52 (231)
286 1qhl_A Protein (cell division 98.4 5.5E-09 1.9E-13 106.1 -5.4 54 495-558 9-62 (227)
287 2ius_A DNA translocase FTSK; n 98.4 7.3E-09 2.5E-13 116.8 -5.5 154 515-677 159-343 (512)
288 3cmw_A Protein RECA, recombina 98.4 8.7E-06 3E-10 102.8 21.1 30 520-549 729-758 (1706)
289 3nwj_A ATSK2; P loop, shikimat 98.4 2.8E-08 9.5E-13 102.4 -1.1 54 493-547 15-72 (250)
290 3tr0_A Guanylate kinase, GMP k 98.4 1.3E-07 4.4E-12 93.3 3.2 32 517-548 1-32 (205)
291 1svm_A Large T antigen; AAA+ f 98.4 1.7E-09 6E-14 117.9 -11.4 131 511-648 157-312 (377)
292 2zr9_A Protein RECA, recombina 98.4 7.4E-07 2.5E-11 96.3 9.3 138 519-699 57-232 (349)
293 3tr0_A Guanylate kinase, GMP k 98.3 2.3E-07 7.9E-12 91.5 3.8 31 185-215 1-31 (205)
294 3kta_A Chromosome segregation 98.3 4.8E-07 1.6E-11 87.7 5.9 39 514-553 18-56 (182)
295 1jjv_A Dephospho-COA kinase; P 98.3 3.3E-07 1.1E-11 90.7 4.6 69 321-391 60-131 (206)
296 2e87_A Hypothetical protein PH 98.3 8E-07 2.7E-11 96.2 7.0 120 524-677 168-293 (357)
297 2f9l_A RAB11B, member RAS onco 98.3 3.6E-07 1.2E-11 89.8 3.8 36 628-665 130-165 (199)
298 3kta_A Chromosome segregation 98.3 6.8E-07 2.3E-11 86.6 5.5 48 167-217 3-52 (182)
299 2xau_A PRE-mRNA-splicing facto 98.3 8.8E-07 3E-11 105.4 7.5 70 615-684 186-260 (773)
300 2xau_A PRE-mRNA-splicing facto 98.2 5.7E-07 1.9E-11 107.0 5.2 73 315-387 185-262 (773)
301 2ce7_A Cell division protein F 98.2 8.9E-07 3E-11 99.3 6.4 112 512-680 40-168 (476)
302 1lvg_A Guanylate kinase, GMP k 98.2 2.8E-07 9.6E-12 91.3 2.0 44 630-674 116-160 (198)
303 3k1j_A LON protease, ATP-depen 98.2 2.1E-07 7.3E-12 107.8 0.5 175 170-365 39-227 (604)
304 3a00_A Guanylate kinase, GMP k 98.2 4.2E-07 1.4E-11 88.8 2.3 28 523-550 1-28 (186)
305 2ce7_A Cell division protein F 98.2 7.3E-07 2.5E-11 100.0 4.5 59 323-381 93-168 (476)
306 1jjv_A Dephospho-COA kinase; P 98.2 9.6E-07 3.3E-11 87.4 4.7 126 525-696 4-132 (206)
307 2qtf_A Protein HFLX, GTP-bindi 98.2 8.8E-07 3E-11 96.2 4.3 134 525-665 181-351 (364)
308 2j41_A Guanylate kinase; GMP, 98.1 1.1E-06 3.8E-11 86.6 4.1 35 518-552 1-35 (207)
309 1qhl_A Protein (cell division 98.1 7E-08 2.4E-12 97.9 -4.8 55 165-229 9-63 (227)
310 1oix_A RAS-related protein RAB 98.1 5.3E-08 1.8E-12 95.4 -6.4 36 328-365 153-188 (191)
311 3t34_A Dynamin-related protein 98.1 5.7E-06 1.9E-10 89.5 9.0 41 512-555 26-68 (360)
312 3uie_A Adenylyl-sulfate kinase 98.1 4.2E-07 1.4E-11 89.9 -0.1 53 169-222 3-55 (200)
313 1t9h_A YLOQ, probable GTPase E 98.1 3.6E-07 1.2E-11 96.8 -1.2 37 520-556 170-206 (307)
314 1lvg_A Guanylate kinase, GMP k 98.1 1.2E-06 4.3E-11 86.6 2.6 57 331-392 116-173 (198)
315 4a1f_A DNAB helicase, replicat 98.0 6.5E-06 2.2E-10 88.3 8.2 54 320-375 109-164 (338)
316 3uie_A Adenylyl-sulfate kinase 98.0 2.8E-07 9.7E-12 91.1 -2.3 53 499-554 3-55 (200)
317 1fnn_A CDC6P, cell division co 98.0 3.8E-05 1.3E-09 82.8 14.4 126 522-682 41-175 (389)
318 2e87_A Hypothetical protein PH 98.0 1E-05 3.5E-10 87.5 9.2 62 316-378 227-293 (357)
319 3vaa_A Shikimate kinase, SK; s 98.0 2.4E-06 8.3E-11 84.2 3.8 37 178-214 12-48 (199)
320 2j41_A Guanylate kinase; GMP, 98.0 2.9E-06 9.9E-11 83.5 4.3 32 186-217 1-32 (207)
321 3a00_A Guanylate kinase, GMP k 98.0 2.5E-06 8.6E-11 83.3 3.1 26 191-216 1-26 (186)
322 1fnn_A CDC6P, cell division co 98.0 3.5E-05 1.2E-09 83.1 12.4 47 337-384 124-176 (389)
323 1kgd_A CASK, peripheral plasma 98.0 2.2E-06 7.7E-11 83.2 2.6 35 521-555 3-38 (180)
324 3vaa_A Shikimate kinase, SK; s 98.0 3.1E-06 1E-10 83.5 3.6 38 510-547 12-49 (199)
325 2oap_1 GSPE-2, type II secreti 98.0 1E-06 3.5E-11 99.8 -0.1 42 179-220 248-289 (511)
326 1v5w_A DMC1, meiotic recombina 97.9 2.8E-05 9.6E-10 83.6 11.0 28 187-214 118-145 (343)
327 3hr8_A Protein RECA; alpha and 97.9 5.3E-05 1.8E-09 81.8 12.7 41 187-229 57-97 (356)
328 4eun_A Thermoresistant glucoki 97.9 4.2E-06 1.4E-10 82.6 3.1 38 517-558 23-60 (200)
329 4a1f_A DNAB helicase, replicat 97.9 1.4E-05 4.8E-10 85.7 7.2 126 513-673 36-163 (338)
330 2qtf_A Protein HFLX, GTP-bindi 97.9 1.6E-05 5.4E-10 86.3 7.1 63 299-365 280-350 (364)
331 2z43_A DNA repair and recombin 97.9 4E-05 1.4E-09 81.7 10.0 28 187-214 103-130 (324)
332 4e22_A Cytidylate kinase; P-lo 97.8 3E-06 1E-10 87.1 0.9 35 521-555 25-62 (252)
333 1u0l_A Probable GTPase ENGC; p 97.8 4.5E-06 1.5E-10 88.2 1.7 37 188-226 166-202 (301)
334 1kgd_A CASK, peripheral plasma 97.8 1E-05 3.5E-10 78.5 3.8 27 189-215 3-29 (180)
335 3tqc_A Pantothenate kinase; bi 97.8 1.3E-06 4.5E-11 93.1 -2.9 60 171-230 66-131 (321)
336 4eun_A Thermoresistant glucoki 97.8 1.1E-05 3.7E-10 79.6 3.8 31 185-215 23-53 (200)
337 3tau_A Guanylate kinase, GMP k 97.7 1.5E-05 5.1E-10 79.2 4.0 29 521-549 6-34 (208)
338 1rz3_A Hypothetical protein rb 97.7 6.9E-06 2.3E-10 81.2 1.5 37 520-556 19-55 (201)
339 3kl4_A SRP54, signal recogniti 97.7 6.7E-05 2.3E-09 83.0 9.3 35 522-556 96-130 (433)
340 2vp4_A Deoxynucleoside kinase; 97.7 1.1E-05 3.7E-10 81.6 2.7 36 519-558 16-51 (230)
341 1ixz_A ATP-dependent metallopr 97.7 8.8E-07 3E-11 90.7 -5.6 48 166-215 26-73 (254)
342 2qby_A CDC6 homolog 1, cell di 97.7 2E-05 6.7E-10 84.7 4.7 128 521-681 43-178 (386)
343 4e22_A Cytidylate kinase; P-lo 97.7 1.4E-05 4.9E-10 82.0 3.4 35 175-212 14-48 (252)
344 3hr8_A Protein RECA; alpha and 97.7 0.00022 7.5E-09 76.9 12.7 36 519-554 57-92 (356)
345 2qby_A CDC6 homolog 1, cell di 97.7 2.7E-05 9.2E-10 83.6 5.6 45 339-383 129-179 (386)
346 3cmu_A Protein RECA, recombina 97.7 0.0061 2.1E-07 78.3 27.7 28 520-547 380-407 (2050)
347 3bh0_A DNAB-like replicative h 97.7 2.7E-05 9.2E-10 82.7 5.3 53 321-375 134-189 (315)
348 3t34_A Dynamin-related protein 97.7 9.3E-05 3.2E-09 79.9 9.4 35 178-215 24-58 (360)
349 1t9h_A YLOQ, probable GTPase E 97.7 4.1E-06 1.4E-10 88.6 -1.3 33 188-220 170-202 (307)
350 1iy2_A ATP-dependent metallopr 97.7 1.1E-06 3.8E-11 91.4 -5.7 47 167-215 51-97 (278)
351 1svm_A Large T antigen; AAA+ f 97.7 6.4E-06 2.2E-10 89.7 0.1 37 178-214 156-192 (377)
352 1zu4_A FTSY; GTPase, signal re 97.7 7.1E-06 2.4E-10 87.5 0.5 44 513-556 95-138 (320)
353 3ney_A 55 kDa erythrocyte memb 97.7 1.7E-05 5.8E-10 78.5 3.0 32 517-548 13-44 (197)
354 3tau_A Guanylate kinase, GMP k 97.7 2.5E-05 8.6E-10 77.6 4.3 28 189-216 6-33 (208)
355 1ixz_A ATP-dependent metallopr 97.6 9.3E-06 3.2E-10 83.0 0.7 57 496-558 26-82 (254)
356 3tqc_A Pantothenate kinase; bi 97.6 7.6E-06 2.6E-10 87.2 -0.1 156 511-680 74-241 (321)
357 1iy2_A ATP-dependent metallopr 97.6 1.1E-05 3.7E-10 83.9 0.7 132 496-647 50-195 (278)
358 3kl4_A SRP54, signal recogniti 97.6 0.00021 7.3E-09 78.9 10.8 39 190-230 96-134 (433)
359 2yv5_A YJEQ protein; hydrolase 97.6 3.9E-05 1.3E-09 81.0 4.7 38 296-333 263-300 (302)
360 2ffh_A Protein (FFH); SRP54, s 97.6 5.6E-05 1.9E-09 83.4 6.1 51 500-556 81-131 (425)
361 1knq_A Gluconate kinase; ALFA/ 97.5 2.7E-05 9.2E-10 74.7 2.6 34 521-558 6-39 (175)
362 1kag_A SKI, shikimate kinase I 97.5 3E-05 1E-09 74.0 2.9 28 522-549 3-30 (173)
363 3cr8_A Sulfate adenylyltranfer 97.5 1.8E-05 6E-10 90.4 1.3 40 519-558 365-406 (552)
364 1ega_A Protein (GTP-binding pr 97.5 1.3E-05 4.5E-10 84.6 0.2 57 620-683 101-166 (301)
365 4dcu_A GTP-binding protein ENG 97.5 0.00019 6.4E-09 80.1 9.5 57 324-380 88-144 (456)
366 1v5w_A DMC1, meiotic recombina 97.5 0.0002 6.8E-09 76.9 9.1 28 519-546 118-145 (343)
367 3cmu_A Protein RECA, recombina 97.5 0.00032 1.1E-08 89.8 12.2 31 519-549 728-758 (2050)
368 2vp4_A Deoxynucleoside kinase; 97.5 3.1E-05 1.1E-09 78.2 2.4 30 185-214 14-43 (230)
369 2dy1_A Elongation factor G; tr 97.5 1.1E-05 3.8E-10 94.3 -1.0 131 517-678 3-138 (665)
370 3b9p_A CG5977-PA, isoform A; A 97.5 0.00055 1.9E-08 71.3 11.9 57 322-378 97-170 (297)
371 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 6.3E-05 2.1E-09 70.9 4.0 29 183-212 16-44 (149)
372 2ffh_A Protein (FFH); SRP54, s 97.5 0.00062 2.1E-08 75.1 12.4 57 169-231 80-136 (425)
373 2z43_A DNA repair and recombin 97.5 0.00017 5.8E-09 76.8 7.6 28 519-546 103-130 (324)
374 1knq_A Gluconate kinase; ALFA/ 97.5 5.9E-05 2E-09 72.2 3.7 26 189-214 6-31 (175)
375 3lxx_A GTPase IMAP family memb 97.4 0.00038 1.3E-08 70.2 9.7 42 635-676 110-157 (239)
376 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 7.6E-05 2.6E-09 70.4 3.9 31 513-544 14-44 (149)
377 3ney_A 55 kDa erythrocyte memb 97.4 6.3E-05 2.2E-09 74.4 3.5 31 185-215 13-43 (197)
378 3bh0_A DNAB-like replicative h 97.4 0.00012 4.2E-09 77.6 5.7 130 512-674 57-189 (315)
379 1kag_A SKI, shikimate kinase I 97.4 6.3E-05 2.2E-09 71.7 3.1 26 190-215 3-28 (173)
380 3ice_A Transcription terminati 97.4 2.1E-05 7.3E-10 85.0 -0.3 52 495-547 133-198 (422)
381 3ice_A Transcription terminati 97.4 2E-05 6.8E-10 85.3 -0.5 50 165-214 133-197 (422)
382 3b9p_A CG5977-PA, isoform A; A 97.4 0.00031 1E-08 73.2 8.5 57 621-677 97-170 (297)
383 2z4s_A Chromosomal replication 97.4 0.00024 8.1E-09 79.0 8.0 41 337-377 193-237 (440)
384 2p67_A LAO/AO transport system 97.4 1.8E-05 6.3E-10 85.0 -1.2 46 511-556 44-89 (341)
385 1u94_A RECA protein, recombina 97.4 0.00098 3.3E-08 71.9 12.4 26 188-213 60-85 (356)
386 2dy1_A Elongation factor G; tr 97.4 5.4E-05 1.9E-09 88.5 2.4 47 331-379 92-138 (665)
387 3lxx_A GTPase IMAP family memb 97.3 0.00094 3.2E-08 67.3 11.2 40 336-375 110-154 (239)
388 1rz3_A Hypothetical protein rb 97.3 7E-05 2.4E-09 73.9 2.3 29 188-216 19-47 (201)
389 4eaq_A DTMP kinase, thymidylat 97.3 9.8E-05 3.4E-09 74.7 3.1 42 513-555 13-57 (229)
390 3qks_A DNA double-strand break 97.3 0.00025 8.5E-09 70.3 5.6 30 183-213 16-45 (203)
391 2qt1_A Nicotinamide riboside k 97.3 0.00011 3.9E-09 72.4 3.1 30 519-548 17-46 (207)
392 1cke_A CK, MSSA, protein (cyti 97.3 4E-05 1.4E-09 76.5 -0.2 34 523-556 5-41 (227)
393 1zu4_A FTSY; GTPase, signal re 97.2 5.7E-05 1.9E-09 80.4 0.9 50 180-231 94-143 (320)
394 2p67_A LAO/AO transport system 97.2 5.7E-06 2E-10 88.9 -6.9 51 166-216 31-81 (341)
395 2qt1_A Nicotinamide riboside k 97.2 0.00011 3.9E-09 72.4 2.7 29 187-215 17-45 (207)
396 2www_A Methylmalonic aciduria 97.2 0.00011 3.8E-09 79.1 2.0 35 522-556 73-107 (349)
397 2z4s_A Chromosomal replication 97.1 0.00039 1.3E-08 77.2 6.3 40 636-675 193-236 (440)
398 2pez_A Bifunctional 3'-phospho 97.1 0.00014 4.8E-09 70.0 2.0 31 521-552 3-33 (179)
399 2f9l_A RAB11B, member RAS onco 97.1 0.0005 1.7E-08 67.1 5.9 35 329-365 130-164 (199)
400 2i1q_A DNA repair and recombin 97.0 0.0011 3.7E-08 70.3 8.2 27 187-213 94-120 (322)
401 3cr8_A Sulfate adenylyltranfer 97.0 0.00012 4E-09 83.6 0.5 31 187-217 365-395 (552)
402 3qks_A DNA double-strand break 97.0 0.00035 1.2E-08 69.2 3.9 31 513-544 14-44 (203)
403 4eaq_A DTMP kinase, thymidylat 97.0 0.00028 9.7E-09 71.3 3.3 36 181-216 13-51 (229)
404 3m6a_A ATP-dependent protease 97.0 0.0001 3.5E-09 84.1 -0.2 57 498-557 86-142 (543)
405 1cke_A CK, MSSA, protein (cyti 97.0 0.00037 1.3E-08 69.4 3.7 24 191-214 5-28 (227)
406 2pez_A Bifunctional 3'-phospho 96.9 0.00045 1.5E-08 66.4 3.7 26 189-214 3-28 (179)
407 1m7g_A Adenylylsulfate kinase; 96.9 0.00021 7.1E-09 70.9 0.8 35 518-552 20-54 (211)
408 1y63_A LMAJ004144AAA protein; 96.9 0.00044 1.5E-08 67.0 3.1 32 183-214 2-33 (184)
409 2qag_A Septin-2, protein NEDD5 96.8 8.1E-05 2.8E-09 80.6 -2.8 46 165-216 17-62 (361)
410 2if2_A Dephospho-COA kinase; a 96.8 0.00051 1.8E-08 67.3 3.2 22 193-214 3-24 (204)
411 2if2_A Dephospho-COA kinase; a 96.8 0.00051 1.7E-08 67.3 3.0 21 525-545 3-23 (204)
412 1xp8_A RECA protein, recombina 96.8 0.0068 2.3E-07 65.5 12.1 26 187-212 70-95 (366)
413 1u94_A RECA protein, recombina 96.8 0.004 1.4E-07 67.1 9.9 28 520-547 60-87 (356)
414 2yvu_A Probable adenylyl-sulfa 96.7 0.00042 1.4E-08 67.0 1.9 35 520-554 10-44 (186)
415 1y63_A LMAJ004144AAA protein; 96.7 0.00065 2.2E-08 65.8 3.1 32 515-546 2-33 (184)
416 1f6b_A SAR1; gtpases, N-termin 96.7 0.00034 1.2E-08 68.4 1.0 42 502-545 6-47 (198)
417 2qor_A Guanylate kinase; phosp 96.7 0.00068 2.3E-08 66.7 3.2 29 187-215 8-36 (204)
418 2gj8_A MNME, tRNA modification 96.7 0.00086 2.9E-08 63.9 3.8 26 522-547 3-28 (172)
419 4fcw_A Chaperone protein CLPB; 96.7 0.0031 1E-07 65.8 8.4 31 524-554 48-78 (311)
420 3m6a_A ATP-dependent protease 96.7 5.6E-05 1.9E-09 86.4 -5.5 47 168-215 86-132 (543)
421 1m2o_B GTP-binding protein SAR 96.7 0.001 3.5E-08 64.4 4.3 33 512-545 13-45 (190)
422 1j8m_F SRP54, signal recogniti 96.7 0.00022 7.5E-09 75.1 -0.7 52 500-556 79-131 (297)
423 2gj8_A MNME, tRNA modification 96.7 0.00083 2.8E-08 64.0 3.3 27 189-215 2-28 (172)
424 2q6t_A DNAB replication FORK h 96.7 0.0061 2.1E-07 67.6 10.7 127 512-673 189-317 (444)
425 2dhr_A FTSH; AAA+ protein, hex 96.7 0.00046 1.6E-08 77.7 1.7 56 497-558 42-97 (499)
426 2qor_A Guanylate kinase; phosp 96.6 0.00068 2.3E-08 66.8 2.6 30 519-548 8-37 (204)
427 2ohf_A Protein OLA1, GTP-bindi 96.6 0.00097 3.3E-08 72.8 4.0 40 519-558 18-68 (396)
428 2qag_A Septin-2, protein NEDD5 96.6 0.00018 6E-09 77.9 -2.0 52 494-553 16-67 (361)
429 2www_A Methylmalonic aciduria 96.6 0.00078 2.7E-08 72.5 3.0 29 189-217 72-100 (349)
430 2q6t_A DNAB replication FORK h 96.6 0.0046 1.6E-07 68.6 9.3 55 319-375 263-318 (444)
431 1l8q_A Chromosomal replication 96.6 0.0041 1.4E-07 65.6 8.5 25 190-214 36-60 (324)
432 1mky_A Probable GTP-binding pr 96.6 0.0016 5.4E-08 72.2 5.1 36 524-559 181-228 (439)
433 2dhr_A FTSH; AAA+ protein, hex 96.6 0.00035 1.2E-08 78.8 -0.2 45 169-215 44-88 (499)
434 2wji_A Ferrous iron transport 96.5 0.0016 5.5E-08 61.3 4.2 24 525-548 5-28 (165)
435 1m2o_B GTP-binding protein SAR 96.5 0.0012 4.1E-08 63.9 3.4 35 179-214 12-46 (190)
436 1sxj_C Activator 1 40 kDa subu 96.5 0.00027 9.2E-09 75.4 -1.5 42 174-215 27-70 (340)
437 1f6b_A SAR1; gtpases, N-termin 96.5 0.00026 8.8E-09 69.3 -1.8 42 172-214 6-48 (198)
438 2zej_A Dardarin, leucine-rich 96.4 0.0015 5E-08 62.8 3.4 26 525-550 4-29 (184)
439 2wji_A Ferrous iron transport 96.4 0.0016 5.4E-08 61.4 3.4 23 193-215 5-27 (165)
440 1ega_A Protein (GTP-binding pr 96.4 0.001 3.5E-08 70.0 2.2 61 321-388 101-170 (301)
441 3t61_A Gluconokinase; PSI-biol 96.4 0.0014 4.9E-08 64.1 3.1 24 191-214 18-41 (202)
442 1njg_A DNA polymerase III subu 96.4 0.0088 3E-07 58.7 8.9 42 636-678 125-168 (250)
443 3cm0_A Adenylate kinase; ATP-b 96.4 0.0015 5.3E-08 62.7 3.1 25 189-213 2-26 (186)
444 2ga8_A Hypothetical 39.9 kDa p 96.4 0.00051 1.7E-08 73.8 -0.5 36 512-547 11-48 (359)
445 2ga8_A Hypothetical 39.9 kDa p 96.3 0.00043 1.5E-08 74.3 -1.0 36 179-214 10-47 (359)
446 2yvu_A Probable adenylyl-sulfa 96.3 0.0019 6.4E-08 62.4 3.6 28 187-214 9-36 (186)
447 3t61_A Gluconokinase; PSI-biol 96.3 0.0016 5.6E-08 63.7 3.0 25 523-547 18-42 (202)
448 1m7g_A Adenylylsulfate kinase; 96.3 0.0017 5.7E-08 64.3 2.9 30 186-215 20-49 (211)
449 1q3t_A Cytidylate kinase; nucl 96.3 0.0022 7.5E-08 64.6 3.8 26 188-213 13-38 (236)
450 2v1u_A Cell division control p 96.2 0.0033 1.1E-07 67.2 5.2 26 189-214 42-67 (387)
451 3cm0_A Adenylate kinase; ATP-b 96.2 0.002 6.7E-08 61.9 3.1 25 521-545 2-26 (186)
452 2wjg_A FEOB, ferrous iron tran 96.2 0.0024 8.1E-08 61.1 3.5 22 525-546 9-30 (188)
453 3h4m_A Proteasome-activating n 96.2 0.0074 2.5E-07 62.1 7.5 27 521-547 49-75 (285)
454 1q3t_A Cytidylate kinase; nucl 96.2 0.0024 8.4E-08 64.3 3.5 27 520-546 13-39 (236)
455 1sxj_C Activator 1 40 kDa subu 96.2 0.00044 1.5E-08 73.8 -2.3 42 511-552 32-75 (340)
456 2wjg_A FEOB, ferrous iron tran 96.1 0.0027 9.2E-08 60.7 3.5 22 193-214 9-30 (188)
457 1lv7_A FTSH; alpha/beta domain 96.1 0.0017 5.7E-08 66.2 2.1 32 181-214 37-68 (257)
458 1np6_A Molybdopterin-guanine d 96.1 0.0017 5.6E-08 62.9 1.5 28 523-550 6-33 (174)
459 3kb2_A SPBC2 prophage-derived 96.0 0.0032 1.1E-07 59.3 3.4 22 193-214 3-24 (173)
460 4ag6_A VIRB4 ATPase, type IV s 96.0 0.0024 8E-08 69.6 2.8 35 522-556 34-68 (392)
461 2zej_A Dardarin, leucine-rich 96.0 0.003 1E-07 60.6 3.1 22 193-214 4-25 (184)
462 3io5_A Recombination and repai 96.0 0.012 4.1E-07 62.1 7.9 55 324-378 93-173 (333)
463 1lv7_A FTSH; alpha/beta domain 96.0 0.0023 7.8E-08 65.1 2.3 34 513-548 37-70 (257)
464 1j8m_F SRP54, signal recogniti 96.0 0.0014 4.8E-08 68.9 0.7 58 169-231 78-136 (297)
465 1qhx_A CPT, protein (chloramph 96.0 0.0038 1.3E-07 59.4 3.7 24 191-214 3-26 (178)
466 1np6_A Molybdopterin-guanine d 96.0 0.0038 1.3E-07 60.3 3.5 23 192-214 7-29 (174)
467 1vht_A Dephospho-COA kinase; s 95.9 0.0042 1.4E-07 61.5 3.7 25 190-214 3-27 (218)
468 2v1u_A Cell division control p 95.9 0.0077 2.6E-07 64.3 6.0 28 521-548 42-69 (387)
469 3dm5_A SRP54, signal recogniti 95.9 0.047 1.6E-06 60.3 12.2 29 522-550 99-127 (443)
470 1kht_A Adenylate kinase; phosp 95.8 0.0048 1.6E-07 59.1 3.7 23 191-213 3-25 (192)
471 2b8t_A Thymidine kinase; deoxy 95.8 0.015 5.1E-07 58.4 7.4 52 338-391 89-150 (223)
472 3kb2_A SPBC2 prophage-derived 95.8 0.0044 1.5E-07 58.3 3.3 23 525-547 3-25 (173)
473 3r20_A Cytidylate kinase; stru 95.8 0.0021 7E-08 65.2 0.8 25 522-546 8-32 (233)
474 1qhx_A CPT, protein (chloramph 95.7 0.0057 1.9E-07 58.2 3.8 27 522-548 2-28 (178)
475 3lw7_A Adenylate kinase relate 95.7 0.0049 1.7E-07 57.8 3.3 20 193-212 3-22 (179)
476 1mky_A Probable GTP-binding pr 95.7 0.008 2.7E-07 66.5 5.5 24 192-215 181-204 (439)
477 3r20_A Cytidylate kinase; stru 95.7 0.0053 1.8E-07 62.2 3.4 24 191-214 9-32 (233)
478 3dm5_A SRP54, signal recogniti 95.7 0.069 2.4E-06 59.0 12.7 26 190-215 99-124 (443)
479 2rhm_A Putative kinase; P-loop 95.7 0.0047 1.6E-07 59.5 2.9 25 189-213 3-27 (193)
480 2ze6_A Isopentenyl transferase 95.7 0.0053 1.8E-07 62.8 3.4 22 193-214 3-24 (253)
481 2p5t_B PEZT; postsegregational 95.6 0.0022 7.6E-08 65.5 0.5 30 519-548 28-57 (253)
482 1via_A Shikimate kinase; struc 95.6 0.0049 1.7E-07 58.8 2.9 22 193-214 6-27 (175)
483 2jaq_A Deoxyguanosine kinase; 95.6 0.006 2E-07 59.1 3.4 22 193-214 2-23 (205)
484 1jal_A YCHF protein; nucleotid 95.6 0.0091 3.1E-07 64.4 5.2 36 523-558 2-48 (363)
485 1ypw_A Transitional endoplasmi 95.6 0.0035 1.2E-07 74.8 2.0 32 518-549 233-264 (806)
486 3bgw_A DNAB-like replicative h 95.6 0.013 4.5E-07 64.9 6.6 53 321-375 263-318 (444)
487 1kht_A Adenylate kinase; phosp 95.6 0.0068 2.3E-07 58.1 3.7 25 523-547 3-27 (192)
488 1q57_A DNA primase/helicase; d 95.6 0.09 3.1E-06 59.0 13.5 33 181-213 232-264 (503)
489 2p5t_B PEZT; postsegregational 95.5 0.0045 1.5E-07 63.1 2.4 29 187-215 28-56 (253)
490 1vht_A Dephospho-COA kinase; s 95.5 0.0062 2.1E-07 60.2 3.3 24 522-545 3-26 (218)
491 2rhm_A Putative kinase; P-loop 95.5 0.006 2.1E-07 58.7 3.0 27 521-547 3-29 (193)
492 3trf_A Shikimate kinase, SK; a 95.5 0.0076 2.6E-07 57.8 3.7 24 190-213 4-27 (185)
493 3lw7_A Adenylate kinase relate 95.5 0.0068 2.3E-07 56.8 3.3 19 525-543 3-21 (179)
494 1via_A Shikimate kinase; struc 95.5 0.0063 2.1E-07 58.0 3.0 23 525-547 6-28 (175)
495 1ly1_A Polynucleotide kinase; 95.5 0.0073 2.5E-07 57.2 3.4 22 192-213 3-24 (181)
496 2ze6_A Isopentenyl transferase 95.5 0.0064 2.2E-07 62.1 3.2 23 525-547 3-25 (253)
497 3k53_A Ferrous iron transport 95.5 0.0066 2.2E-07 62.5 3.3 39 646-684 144-186 (271)
498 3iij_A Coilin-interacting nucl 95.5 0.0069 2.4E-07 57.9 3.2 25 189-213 9-33 (180)
499 1gtv_A TMK, thymidylate kinase 95.4 0.0021 7.2E-08 63.1 -0.6 30 525-554 2-31 (214)
500 1ex7_A Guanylate kinase; subst 95.4 0.0071 2.4E-07 59.0 3.2 20 194-213 4-23 (186)
No 1
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.1e-74 Score=690.82 Aligned_cols=428 Identities=36% Similarity=0.654 Sum_probs=321.3
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCC---CCCCcEEEEEeeeeecCCChHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKI---PVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~---~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
.|...|++++|+++++|+|+||+|.+|++++|+||||||||||||+|+|... +.+....+.|+.|+.....
T Consensus 435 ~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~------ 508 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTH------ 508 (986)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCC------
T ss_pred eeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccc------
Confidence 4777799999999999999999999999999999999999999999996311 1111112233332210000
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
....+.+.+.. ...+. ..++.++|+.+||.....++++.+|
T Consensus 509 -------------------------------~~ltv~e~l~~-----~~~~~---~~~v~~~L~~lgL~~~~~~~~~~~L 549 (986)
T 2iw3_A 509 -------------------------------SDTSVLDFVFE-----SGVGT---KEAIKDKLIEFGFTDEMIAMPISAL 549 (986)
T ss_dssp -------------------------------TTSBHHHHHHT-----TCSSC---HHHHHHHHHHTTCCHHHHHSBGGGC
T ss_pred -------------------------------cCCcHHHHHHH-----hhcCH---HHHHHHHHHHcCCChhhhcCCcccC
Confidence 00011111110 00111 4568889999999644557999999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
||||||||+|||||+.+|+||||||||||||+.++.+|.++|++.+.|||+||||++++..+||+|++|++|+++.+.|+
T Consensus 550 SGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~ 629 (986)
T 2iw3_A 550 SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGN 629 (986)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCC
Confidence 99999999999999999999999999999999999999999988778999999999999999999999999999767788
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCccccccce
Q 048654 402 FDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSV 481 (723)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (723)
++++...... .. ....+.. ...
T Consensus 630 ~~e~~~~~~~------------------~~---------------------------~~~~l~~-------------~~~ 651 (986)
T 2iw3_A 630 FTEFVKKCPA------------------AK---------------------------AYEELSN-------------TDL 651 (986)
T ss_dssp HHHHHHHCGG------------------GG---------------------------GSSSTTT-------------CCC
T ss_pred HHHHHhhhHH------------------HH---------------------------HHHhhhh-------------hhh
Confidence 8766321000 00 0000000 000
Q ss_pred eeecCCC------CCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEE
Q 048654 482 EFHFPEP------TELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555 (723)
Q Consensus 482 ~~~~~~~------~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~ 555 (723)
.+.+|.+ ...++++|+++|++|+|++...++|+||||+|.+|++++|+||||||||||+|+|+|+++|++|+|+
T Consensus 652 ~~~~p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~ 731 (986)
T 2iw3_A 652 EFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731 (986)
T ss_dssp CCCCCCCCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEE
T ss_pred hccccccccccccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 0111111 0123579999999999975334689999999999999999999999999999999999999999999
Q ss_pred ECCceeEEEEcccccccc--CccccHHHHHHhh-----------------------------------------------
Q 048654 556 RSQKLRIGRYSQHFVDLL--TMEETPVSYLLRL----------------------------------------------- 586 (723)
Q Consensus 556 ~~~~~~ig~~~q~~~~~~--~~~~~~~~~~~~~----------------------------------------------- 586 (723)
+++..+++|++|+....+ ....++..++...
T Consensus 732 ~~~~~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~ 811 (986)
T 2iw3_A 732 THENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKF 811 (986)
T ss_dssp ECTTCCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEE
T ss_pred EcCccceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhh
Confidence 988778999998642100 0000111100000
Q ss_pred ---------------------------------------------------------CCCCCCCcHHHHHHHHHHhCCCC
Q 048654 587 ---------------------------------------------------------HPDQEGLSKQEAVRAKLGKFGLP 609 (723)
Q Consensus 587 ---------------------------------------------------------~~~~~~~~~~~~~~~~L~~~gl~ 609 (723)
.... .......++++|+.|||.
T Consensus 812 ~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~-~~~~~~~i~~~Le~lGL~ 890 (986)
T 2iw3_A 812 KNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQF-RPLTRKEIEEHCSMLGLD 890 (986)
T ss_dssp TTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCC-CCCCHHHHHHHHHHTTCC
T ss_pred cccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhccc-chhHHHHHHHHHHHcCCC
Confidence 0000 001235578899999997
Q ss_pred CCC-CcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCC
Q 048654 610 SHN-HLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEER 688 (723)
Q Consensus 610 ~~~-~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~ 688 (723)
... .++++.+|||||||||+|||||+.+|+||||||||+|||+.+...|.+.|+++++|||+||||++++..+||
T Consensus 891 ~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~D---- 966 (986)
T 2iw3_A 891 PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTE---- 966 (986)
T ss_dssp HHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCC----
T ss_pred chhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCC----
Confidence 432 346789999999999999999999999999999999999999999999999998999999999999999995
Q ss_pred cEEEEEECCeEEe
Q 048654 689 SEIWVVENGTVSR 701 (723)
Q Consensus 689 drv~vl~~G~i~~ 701 (723)
+||+|++|+|+.
T Consensus 967 -rVivL~~G~Iv~ 978 (986)
T 2iw3_A 967 -EVWAVKDGRMTP 978 (986)
T ss_dssp -EEECCBTTBCCC
T ss_pred -EEEEEECCEEEE
Confidence 999999999974
No 2
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.3e-72 Score=643.72 Aligned_cols=454 Identities=24% Similarity=0.302 Sum_probs=308.7
Q ss_pred EE-EeEEEEeCCe-eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 167 TI-DNFSVAARGK-ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 167 ~l-~nls~~y~~~-~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
++ +||+++|+++ .+|+++| +|.+||++||+||||||||||||+|+|+..|..|... . .. ......+.+
T Consensus 22 ~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~-----~---~~-~~~~~~~~g 91 (538)
T 1yqt_A 22 QLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDN-----D---SW-DGVIRAFRG 91 (538)
T ss_dssp --CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTC-----C---SH-HHHHHHTTT
T ss_pred hHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccC-----c---ch-hhhHHhhCC
Confidence 44 5899999887 5999999 9999999999999999999999999998776655410 0 00 000000000
Q ss_pred hhHHHHHHHHHHHhhhcCcC-CCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 245 AHEELVKLREEVASLQNSTS-VDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
.. .......... ..... ................+.+.... ....+++.++|+.+||.. ..++++.+|||
T Consensus 92 ~~--~~~~~~~~~~-~~~~~~~~~q~~~~~~~~~~~~v~e~~~~------~~~~~~~~~~l~~lgl~~-~~~~~~~~LSg 161 (538)
T 1yqt_A 92 NE--LQNYFEKLKN-GEIRPVVKPQYVDLIPKAVKGKVIELLKK------ADETGKLEEVVKALELEN-VLEREIQHLSG 161 (538)
T ss_dssp ST--HHHHHHHHHT-TSCCCEEECSCGGGSGGGCCSBHHHHHHH------HCSSSCHHHHHHHTTCTT-TTTSBGGGCCH
T ss_pred cc--HHHHHHHHHH-HhhhhhhhhhhhhhcchhhhccHHHHHhh------hhHHHHHHHHHHHcCCCh-hhhCChhhCCH
Confidence 00 0000000000 00000 00000000000000001111110 011246788999999974 46899999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE--Ee
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH--FY 398 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~--~~ 398 (723)
||||||+|||||+.+|+|||||||||+||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|... .+
T Consensus 162 GekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~~~~~~~~ 241 (538)
T 1yqt_A 162 GELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIF 241 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCcccccccc
Confidence 9999999999999999999999999999999999999988765 789999999999999999999999854211 11
Q ss_pred cCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCccccc
Q 048654 399 RGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRD 478 (723)
Q Consensus 399 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (723)
..++..- ..+.. ... +.. ........ .
T Consensus 242 ~~~~~~~--------~~~~~----------~~~--~~~--------------------~~~~~~~~-------------~ 268 (538)
T 1yqt_A 242 SQPKGTR--------NGINE----------FLR--GYL--------------------KDENVRFR-------------P 268 (538)
T ss_dssp CCCEEHH--------HHHHH----------HHH--TEE--------------------TTTTEECS-------------S
T ss_pred cchhhHH--------HHHHH----------Hhh--hcc--------------------chhhhccc-------------c
Confidence 1221110 00000 000 000 00000000 0
Q ss_pred cceeeecCCCC--CCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 479 YSVEFHFPEPT--ELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 479 ~~~~~~~~~~~--~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
....+.++.+. ....++++++|+++.|++ ..|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~ 345 (538)
T 1yqt_A 269 YEIKFTKTGERVEIERETLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW 345 (538)
T ss_dssp SCCCCCCSSGGGSSCCCEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC
T ss_pred cccccccCCcccccCCCeEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 00001111111 123578999999999974 3689999999999999999999999999999999999999999986
Q ss_pred CCceeEEEEccccccc--cCccccHHHHH-HhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 557 SQKLRIGRYSQHFVDL--LTMEETPVSYL-LRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 557 ~~~~~ig~~~q~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
...++|++|+.... +++.++. ... ...+. ..+.++++|+.|++.. ...+++.+|||||||||+||||
T Consensus 346 --~~~i~~v~Q~~~~~~~~tv~~~~-~~~~~~~~~------~~~~~~~~l~~~~l~~-~~~~~~~~LSGGe~qrv~lAra 415 (538)
T 1yqt_A 346 --DLTVAYKPQYIKADYEGTVYELL-SKIDASKLN------SNFYKTELLKPLGIID-LYDREVNELSGGELQRVAIAAT 415 (538)
T ss_dssp --CCCEEEECSSCCCCCSSBHHHHH-HHHHHHHHT------CHHHHHHTTTTTTCGG-GTTSBGGGCCHHHHHHHHHHHH
T ss_pred --CceEEEEecCCcCCCCCcHHHHH-HhhhccCCC------HHHHHHHHHHHcCChh-hhcCChhhCCHHHHHHHHHHHH
Confidence 34699999975322 2232211 111 00111 2356788999999974 4457889999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEEC--CeEEecCCCHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVEN--GTVSRFPGTFE 707 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~--G~i~~~~g~~~ 707 (723)
|+.+|+||||||||+|||+.++..|.++|+++ +.|||+||||++++..+|| ||++|++ |++. ..|+++
T Consensus 416 L~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d-----rv~vl~~~~~~~~-~~g~~~ 489 (538)
T 1yqt_A 416 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD-----RLMVFEGEPGKYG-RALPPM 489 (538)
T ss_dssp HTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCS-----EEEEEEEETTTEE-EECCCE
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEeCCcceEe-ecCCHH
Confidence 99999999999999999999999999999875 5699999999999999995 9999986 6775 357877
Q ss_pred HHHHH
Q 048654 708 EYKED 712 (723)
Q Consensus 708 ~~~~~ 712 (723)
++...
T Consensus 490 ~~~~~ 494 (538)
T 1yqt_A 490 GMREG 494 (538)
T ss_dssp EHHHH
T ss_pred HHHhh
Confidence 76543
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.1e-71 Score=644.59 Aligned_cols=457 Identities=25% Similarity=0.307 Sum_probs=312.7
Q ss_pred ceEE--------EeEEEEeCCe-eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCC
Q 048654 165 DITI--------DNFSVAARGK-ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDD 235 (723)
Q Consensus 165 ~I~l--------~nls~~y~~~-~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~ 235 (723)
.|++ +||+++|+++ .+|+++| +|++|+++||+|||||||||||++|+|+..|..|... ...
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~--------~~~- 152 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDN--------DSW- 152 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTC--------CCH-
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccc--------ccc-
Confidence 5888 8999999887 5999999 9999999999999999999999999998877655410 000
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCc-hhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcccc
Q 048654 236 RSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDD-ANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQ 314 (723)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~ 314 (723)
......+.+.. .......... .............. .......+ .+.+... ....++.++|+.+||.. ..
T Consensus 153 ~~~~~~~~G~~--~~~~~~~~~~-~~~~i~~~~q~~~~~~~~~~~tv---~e~l~~~---~~~~~~~~~L~~lgL~~-~~ 222 (607)
T 3bk7_A 153 DNVIRAFRGNE--LQNYFERLKN-GEIRPVVKPQYVDLLPKAVKGKV---RELLKKV---DEVGKFEEVVKELELEN-VL 222 (607)
T ss_dssp HHHHHHTTTST--HHHHHHHHHH-TSCCCEEECSCGGGGGGTCCSBH---HHHHHHT---CCSSCHHHHHHHTTCTT-GG
T ss_pred chhhheeCCEe--hhhhhhhhhh-hhcceEEeechhhhchhhccccH---HHHhhhh---HHHHHHHHHHHHcCCCc-hh
Confidence 00000000000 0000000000 00000000000000 00000001 1111110 11245788999999974 56
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEe
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~ 391 (723)
++++.+|||||||||+|||||+.+|+|||||||||+||+.++.++.++|+++ +.|||+||||++++..+||+|++|+
T Consensus 223 ~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~ 302 (607)
T 3bk7_A 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVY 302 (607)
T ss_dssp GSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEEC
Confidence 8999999999999999999999999999999999999999999999988865 7899999999999999999999998
Q ss_pred CCEEE--EecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCC
Q 048654 392 DQKLH--FYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPL 469 (723)
Q Consensus 392 ~G~i~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (723)
++... .+..++..- ..+.. + .. +.. . .....
T Consensus 303 ~~~~~~g~~~~~~~~~--------~~i~~----~------~~--~~~---------------------~-~~~~~----- 335 (607)
T 3bk7_A 303 GEPGVYGIFSKPKGTR--------NGINE----F------LQ--GYL---------------------K-DENVR----- 335 (607)
T ss_dssp SCTTTEEEECCCEEHH--------HHHHH----H------HH--TEE---------------------T-TTTEE-----
T ss_pred CCccccceeccchhHH--------HHHHH----H------Hh--hcc---------------------h-hhhhh-----
Confidence 65321 011111100 00000 0 00 000 0 00000
Q ss_pred CCCCccccccceeeecCCCC--CCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 470 PEAPKKWRDYSVEFHFPEPT--ELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.+.....+.++.+. ....++++++|+++.|++ ..|+++||+|.+||+++|+|||||||||||++|+|++
T Consensus 336 ------~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 336 ------FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ------CCSSCCCCCCSTTSCCCCCCEEEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ------ccccccccccCCCcccccCceEEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 00000011111111 123568999999999975 3689999999999999999999999999999999999
Q ss_pred CCCcceEEECCceeEEEEcccccc--ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHH
Q 048654 548 SPTEGEVRRSQKLRIGRYSQHFVD--LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQK 625 (723)
Q Consensus 548 ~p~~G~I~~~~~~~ig~~~q~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqk 625 (723)
+|++|+|.+ ...++|++|+... .+++.++........+ ...+.+.++|+.+||... .++++.+||||||
T Consensus 407 ~p~~G~I~~--~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~------~~~~~~~~~l~~~~l~~~-~~~~~~~LSGGe~ 477 (607)
T 3bk7_A 407 EPTEGKVEW--DLTVAYKPQYIKAEYEGTVYELLSKIDSSKL------NSNFYKTELLKPLGIIDL-YDRNVEDLSGGEL 477 (607)
T ss_dssp CCSBSCCCC--CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH------HCHHHHHHTHHHHTCTTT-TTSBGGGCCHHHH
T ss_pred CCCceEEEE--eeEEEEEecCccCCCCCcHHHHHHhhhccCC------CHHHHHHHHHHHcCCchH-hcCChhhCCHHHH
Confidence 999999986 3469999997532 2233222111000000 013457889999999754 4578899999999
Q ss_pred HHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEEC--CeE
Q 048654 626 ARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVEN--GTV 699 (723)
Q Consensus 626 qRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~--G~i 699 (723)
|||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| ||++|++ |.+
T Consensus 478 QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~ad-----rv~vl~~~~g~~ 552 (607)
T 3bk7_A 478 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSD-----RLIVFEGEPGRH 552 (607)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS-----EEEEEEEETTTE
T ss_pred HHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEcCCcceE
Confidence 9999999999999999999999999999999999999876 4699999999999999995 9999986 776
Q ss_pred EecCCCHHHHHHH
Q 048654 700 SRFPGTFEEYKED 712 (723)
Q Consensus 700 ~~~~g~~~~~~~~ 712 (723)
. ..|+++++...
T Consensus 553 ~-~~g~p~~~~~~ 564 (607)
T 3bk7_A 553 G-RALPPMGMREG 564 (607)
T ss_dssp E-EECCCEEHHHH
T ss_pred E-ecCCHHHHHhh
Confidence 5 35788776653
No 4
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-67 Score=610.27 Aligned_cols=463 Identities=20% Similarity=0.263 Sum_probs=302.9
Q ss_pred eEEEEeCCe-eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHH
Q 048654 170 NFSVAARGK-ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEE 248 (723)
Q Consensus 170 nls~~y~~~-~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 248 (723)
|++++|+.. ..|++++ ++.+|+++||+||||||||||||+|+|+..|..|.+. . ..........+.. ..
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~--~------~~~~~~~~~~~~g-~~ 151 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFD--D------PPEWQEIIKYFRG-SE 151 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTC--C------SSCHHHHHHHTTT-ST
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEe--c------ccchhhhhheecC-hh
Confidence 467889755 4677777 6899999999999999999999999999877665431 0 0011110001100 01
Q ss_pred HHHHHHHHHhhhcCcCCCCCCCCCchhh--HHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHH
Q 048654 249 LVKLREEVASLQNSTSVDGEEDGDDAND--AGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWR 326 (723)
Q Consensus 249 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqr 326 (723)
...+...... .......... ..+... .......+...+... ......++.++|+.+|+.. ..++++.+||||||
T Consensus 152 ~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~l~~~gl~~-~~~~~~~~LSgGe~ 227 (608)
T 3j16_B 152 LQNYFTKMLE-DDIKAIIKPQ-YVDNIPRAIKGPVQKVGELLKLR-MEKSPEDVKRYIKILQLEN-VLKRDIEKLSGGEL 227 (608)
T ss_dssp HHHHHHHHHH-TSCCCEEECC-CTTTHHHHCSSSSSHHHHHHHHH-CCSCHHHHHHHHHHHTCTG-GGGSCTTTCCHHHH
T ss_pred hhhhhhHHHH-Hhhhhhhchh-hhhhhhhhhcchhhHHHHHHhhh-hhhHHHHHHHHHHHcCCcc-hhCCChHHCCHHHH
Confidence 1111111100 0000000000 000000 000000001111110 1122467889999999974 55899999999999
Q ss_pred HHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCChh
Q 048654 327 MRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFD 403 (723)
Q Consensus 327 QRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~~~ 403 (723)
|||+|||||+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||+|++|++|... |.....
T Consensus 228 Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~-~~~~~~ 306 (608)
T 3j16_B 228 QRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV-YGVVTL 306 (608)
T ss_dssp HHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTT-EEEECC
T ss_pred HHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccc-cceecC
Confidence 9999999999999999999999999999999999999865 579999999999999999999999876532 110000
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCccccccceee
Q 048654 404 DFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEF 483 (723)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (723)
.+.. +...+ .+ .... ...... ........+
T Consensus 307 ~~~~-----~~~~~-~~---------~~~~------------------------~~~~~~-----------~~~~~~~~~ 336 (608)
T 3j16_B 307 PASV-----REGIN-IF---------LDGH------------------------IPAENL-----------RFRTEALQF 336 (608)
T ss_dssp CEEH-----HHHHH-HH---------HHTE------------------------ETTTTE-----------ECSSSCCCC
T ss_pred chhH-----HHHHH-Hh---------hccc------------------------cchhhh-----------ccccccccc
Confidence 0000 00000 00 0000 000000 000000000
Q ss_pred ecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecC-----cEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 484 HFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMG-----TRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 484 ~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~G-----e~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
....+ .....+...++++.|++. ..+++++||++.+| |+++|+||||||||||+++|+|+++|++|+.. .
T Consensus 337 ~~~~~--~~~~~~~~~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~--~ 411 (608)
T 3j16_B 337 RIADA--TEDLQNDSASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI--P 411 (608)
T ss_dssp CCSSS--SCCCCCCSSSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC--C
T ss_pred ccccc--ccceeeeccceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc--c
Confidence 00000 001112224567788653 24689999999998 78999999999999999999999999999842 2
Q ss_pred ceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 559 KLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 559 ~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
...++|++|.....+. .+....+...... .......+..+++.++|.... ++++.+|||||||||+|||||+.+|
T Consensus 412 ~~~i~~~~q~~~~~~~--~tv~e~~~~~~~~--~~~~~~~~~~~l~~l~l~~~~-~~~~~~LSGGqkQRv~iAraL~~~p 486 (608)
T 3j16_B 412 KLNVSMKPQKIAPKFP--GTVRQLFFKKIRG--QFLNPQFQTDVVKPLRIDDII-DQEVQHLSGGELQRVAIVLALGIPA 486 (608)
T ss_dssp SCCEEEECSSCCCCCC--SBHHHHHHHHCSS--TTTSHHHHHHTHHHHTSTTTS-SSBSSSCCHHHHHHHHHHHHTTSCC
T ss_pred CCcEEEecccccccCC--ccHHHHHHHHhhc--ccccHHHHHHHHHHcCChhhh-cCChhhCCHHHHHHHHHHHHHHhCC
Confidence 3468999997543222 1222222211111 111335577889999998654 5778999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEEC--CeEEecCCCHHHHHHH
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVEN--GTVSRFPGTFEEYKED 712 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~--G~i~~~~g~~~~~~~~ 712 (723)
+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| ||++|++ |++. ..|+++++...
T Consensus 487 ~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aD-----rvivl~~~~g~~~-~~g~p~~~~~~ 560 (608)
T 3j16_B 487 DIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLAD-----KVIVFEGIPSKNA-HARAPESLLTG 560 (608)
T ss_dssp SEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCS-----EEEECEEETTTEE-ECCCCEEHHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEeCCCCeEE-ecCChHHHhhh
Confidence 999999999999999999999998875 4699999999999999995 9999986 8886 46888887665
Q ss_pred H
Q 048654 713 L 713 (723)
Q Consensus 713 ~ 713 (723)
.
T Consensus 561 ~ 561 (608)
T 3j16_B 561 C 561 (608)
T ss_dssp H
T ss_pred h
Confidence 3
No 5
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.3e-68 Score=611.50 Aligned_cols=457 Identities=19% Similarity=0.271 Sum_probs=297.1
Q ss_pred eEEEEeCCeeeeEeeeEEE-eCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHH
Q 048654 170 NFSVAARGKELLKSTSVRI-SHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEE 248 (723)
Q Consensus 170 nls~~y~~~~vL~~isl~i-~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 248 (723)
+.+.+||..- |+-..|.+ ++|+++|||||||||||||||+|+|++.|..|.+.. ..........+.. .+
T Consensus 4 ~~~~~~~~~~-f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~--------~~~~~~~~~~~~g-~~ 73 (538)
T 3ozx_A 4 EVIHRYKVNG-FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNS--------KVGKDEVLKRFRG-KE 73 (538)
T ss_dssp CEEEESSTTS-CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTS--------CCCHHHHHHHHTT-ST
T ss_pred CCceecCCCc-eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcccc--------ccchhhHHhhcCC-ee
Confidence 4667786332 33344444 489999999999999999999999988776553210 0000000000000 00
Q ss_pred HHHHHHHHHh-----hhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 249 LVKLREEVAS-----LQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 249 ~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
...+...... ........ ..+ ..... .+... +.. .....++.++++.+|+.. ..++++.+|||
T Consensus 74 i~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~-~v~~~---l~~---~~~~~~~~~~l~~l~l~~-~~~~~~~~LSg 141 (538)
T 3ozx_A 74 IYNYFKELYSNELKIVHKIQYVE--YAS--KFLKG-TVNEI---LTK---IDERGKKDEVKELLNMTN-LWNKDANILSG 141 (538)
T ss_dssp THHHHHHHHTTCCCEEEECSCTT--GGG--TTCCS-BHHHH---HHH---HCCSSCHHHHHHHTTCGG-GTTSBGGGCCH
T ss_pred HHHHHHHHhhcccchhhccchhh--hhh--hhccC-cHHHH---hhc---chhHHHHHHHHHHcCCch-hhcCChhhCCH
Confidence 0011111100 00000000 000 00000 00011 110 011235778999999964 56899999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE--ec
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF--YR 399 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~--~~ 399 (723)
||||||+|||||+.+|+|||||||||+||+.++.+|.++|+++ +.|||+||||++++..+||+|++|++|...+ +.
T Consensus 142 Ge~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~~~~g~~~ 221 (538)
T 3ozx_A 142 GGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVS 221 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEETTTEEEEC
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCcccccccc
Confidence 9999999999999999999999999999999999999999876 6899999999999999999999998653211 11
Q ss_pred CChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCcccCCCCCCCCCcccccc
Q 048654 400 GNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDY 479 (723)
Q Consensus 400 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (723)
.++.. ...+.. + ...... .... ..... .......
T Consensus 222 ~~~~~--------~~~~~~----~------~~g~~~--------------------~~~~--~~r~~------~~~~~~~ 255 (538)
T 3ozx_A 222 KSYAA--------RVGINN----F------LKGYLP--------------------AENM--KIRPD------EIKFMLK 255 (538)
T ss_dssp CCEEH--------HHHHHH----H------HHTEET--------------------TTTE--ECSSS------CCCCSCC
T ss_pred hhhhH--------HHHHHH----H------Hhhhch--------------------hhhh--hccch------hhhcccc
Confidence 11110 000000 0 000000 0000 00000 0000000
Q ss_pred ceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc
Q 048654 480 SVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK 559 (723)
Q Consensus 480 ~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~ 559 (723)
... .........++++++|+++.|++ ..|..+||+|.+||+++|+||||||||||+++|+|+++|++|+|.+.+.
T Consensus 256 ~~~--~~~~~~~~~~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~ 330 (538)
T 3ozx_A 256 EVS--DLDLSKDLKTKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ 330 (538)
T ss_dssp ------------CCEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC
T ss_pred ccc--cccccccccceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe
Confidence 000 00000123568999999999975 3588889999999999999999999999999999999999999987654
Q ss_pred eeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 560 LRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 560 ~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
.++|++|.....+ ..++.+.+......... .....+.++++.+++.... ++++.+|||||||||+|||||+.+|+
T Consensus 331 -~i~~~~q~~~~~~--~~tv~~~l~~~~~~~~~-~~~~~~~~~l~~~~l~~~~-~~~~~~LSGGq~QRv~iAraL~~~p~ 405 (538)
T 3ozx_A 331 -ILSYKPQRIFPNY--DGTVQQYLENASKDALS-TSSWFFEEVTKRLNLHRLL-ESNVNDLSGGELQKLYIAATLAKEAD 405 (538)
T ss_dssp -CEEEECSSCCCCC--SSBHHHHHHHHCSSTTC-TTSHHHHHTTTTTTGGGCT-TSBGGGCCHHHHHHHHHHHHHHSCCS
T ss_pred -eeEeechhccccc--CCCHHHHHHHhhhhccc-hhHHHHHHHHHHcCCHHHh-cCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 6899999754322 12222222211111100 1224567889999997544 57789999999999999999999999
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEEC--CeEEecCCCHHHHH
Q 048654 640 ILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVEN--GTVSRFPGTFEEYK 710 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~--G~i~~~~g~~~~~~ 710 (723)
||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| ||++|++ |.+. ..+++..+.
T Consensus 406 lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aD-----ri~vl~~~~~~~~-~~~~~~~~~ 476 (538)
T 3ozx_A 406 LYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIAD-----RIIVFKGEPEKAG-LATSPVTLK 476 (538)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS-----EEEEEEEETTTEE-EECCCEEHH
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEeCCcceec-cCCChHHHH
Confidence 99999999999999999999999876 4689999999999999995 9999986 4443 234554443
No 6
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.5e-65 Score=639.31 Aligned_cols=206 Identities=28% Similarity=0.384 Sum_probs=160.0
Q ss_pred CeEEEEEEEEEcCCCc-ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------ee
Q 048654 494 PLLQLIEVSFSYPNRE-DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LR 561 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~-~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ 561 (723)
..|+++||+|+|+++. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+++. .+
T Consensus 1029 g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~ 1108 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQ 1108 (1284)
T ss_dssp CCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTS
T ss_pred CcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhc
Confidence 4699999999997542 35899999999999999999999999999999999999999999998763 35
Q ss_pred EEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC-------C---CcCCCCCCCHHHHHHHHHH
Q 048654 562 IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH-------N---HLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 562 ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~-------~---~~~~i~~LSGGqkqRv~lA 631 (723)
++|++|+..- ...++.+.+. ........ ..+.+.+.++..++... . .......|||||||||+||
T Consensus 1109 i~~v~Q~~~l---~~~ti~eNi~-~~~~~~~~-~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iA 1183 (1284)
T 3g5u_A 1109 LGIVSQEPIL---FDCSIAENIA-YGDNSRVV-SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIA 1183 (1284)
T ss_dssp CEEEESSCCC---CSSBHHHHHT-CCCSSCCC-CHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHH
T ss_pred eEEECCCCcc---ccccHHHHHh-ccCCCCCC-CHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHH
Confidence 8999998521 2234333332 21111111 22334444444433211 1 0123468999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|||+.+|+||||||||+|||+.+...+.+.|++.. .|||+||||++++. .| |||++|++|+|++ .|+++++
T Consensus 1184 Ral~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~-~~-----dri~vl~~G~i~~-~g~~~~l 1256 (1284)
T 3g5u_A 1184 RALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQ-NA-----DLIVVIQNGKVKE-HGTHQQL 1256 (1284)
T ss_dssp HHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGG-SC-----SEEEEEETBEEEE-EECHHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHH-cC-----CEEEEEECCEEEE-ECCHHHH
Confidence 99999999999999999999999999999998864 59999999999985 47 5999999999986 4898887
Q ss_pred HH
Q 048654 710 KE 711 (723)
Q Consensus 710 ~~ 711 (723)
.+
T Consensus 1257 ~~ 1258 (1284)
T 3g5u_A 1257 LA 1258 (1284)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 7
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.8e-63 Score=619.24 Aligned_cols=205 Identities=27% Similarity=0.369 Sum_probs=163.8
Q ss_pred eEEEEEEEEEcCCCc-ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 495 LLQLIEVSFSYPNRE-DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~-~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
-|+++||+|+|+++. .++|+||||+|++||++|||||||||||||+++|.|+++|++|+|.+++. .++
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTE
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 599999999998643 36899999999999999999999999999999999999999999999873 369
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC------CCcCCC----CCCCHHHHHHHHHHH
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH------NHLTPI----AKLSGGQKARVVFTS 632 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~------~~~~~i----~~LSGGqkqRv~lAr 632 (723)
++++|++.- ...++.+.+ .+..+... ...+++.++++..++.+. -.+..+ ..||||||||++|||
T Consensus 1156 ~~V~Qdp~L---F~gTIreNI-~~gld~~~-~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiAR 1230 (1321)
T 4f4c_A 1156 AIVSQEPTL---FDCSIAENI-IYGLDPSS-VTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIAR 1230 (1321)
T ss_dssp EEECSSCCC---CSEEHHHHH-SSSSCTTT-SCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHH
T ss_pred EEECCCCEe---eCccHHHHH-hccCCCCC-CCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHH
Confidence 999998531 223333332 22111111 134567777777665211 011222 479999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||+++|+||||||||++||+++-..|.+.|++. +.|||+|+|.+..+.. | |+|+||++|+|+++ |+++++.
T Consensus 1231 Allr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-a-----D~I~Vld~G~IvE~-Gth~eLl 1303 (1321)
T 4f4c_A 1231 ALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-A-----DCIAVVSNGTIIEK-GTHTQLM 1303 (1321)
T ss_dssp HHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-C-----SEEEEESSSSEEEE-ECHHHHH
T ss_pred HHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-C-----CEEEEEECCEEEEE-CCHHHHH
Confidence 999999999999999999999999999999886 3699999999998863 5 69999999999975 8999986
Q ss_pred H
Q 048654 711 E 711 (723)
Q Consensus 711 ~ 711 (723)
+
T Consensus 1304 ~ 1304 (1321)
T 4f4c_A 1304 S 1304 (1321)
T ss_dssp H
T ss_pred h
Confidence 5
No 8
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.6e-64 Score=594.95 Aligned_cols=329 Identities=26% Similarity=0.338 Sum_probs=227.1
Q ss_pred HHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCC
Q 048654 302 KILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPT--LLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHD 376 (723)
Q Consensus 302 ~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~--lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHd 376 (723)
.+|+.+||.....++++.+|||||||||+|||||+.+|+ ||||||||+|||+.++.+|.++|+++ +.|||+||||
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 468899997554579999999999999999999999998 99999999999999999999988765 6899999999
Q ss_pred HHHHHhhCCEEEEE------eCCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHH
Q 048654 377 RDFLNTVCTEIIHL------HDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAA 450 (723)
Q Consensus 377 l~~l~~iad~Ii~L------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (723)
++++. .||+|++| ++|+++ +.|+++++...... + ... ..
T Consensus 264 ~~~~~-~~d~ii~l~~g~~~~~G~i~-~~g~~~~~~~~~~~----~--------------------------~~~--~~- 308 (670)
T 3ux8_A 264 EDTML-AADYLIDIGPGAGIHGGEVV-AAGTPEEVMNDPNS----L--------------------------TGQ--YL- 308 (670)
T ss_dssp HHHHH-HCSEEEEECSSSGGGCCSEE-EEECHHHHHTCTTC----H--------------------------HHH--HH-
T ss_pred HHHHh-hCCEEEEecccccccCCEEE-EecCHHHHhcCchh----H--------------------------HHH--Hh-
Confidence 99876 59999999 899986 45777665321000 0 000 00
Q ss_pred HHHHhhhhccCcccCCCCCCCCCccccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEc
Q 048654 451 AKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVG 530 (723)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvG 530 (723)
..... .. .+. .........+.+.+.+ ..+|+||||+|++||+++|+|
T Consensus 309 -------~~~~~------~~-~~~------------~~~~~~~~~~~~~~~~-------~~~L~~vsl~I~~Ge~vaIiG 355 (670)
T 3ux8_A 309 -------SGKKF------IP-IPA------------ERRRPDGRWLEVVGAR-------EHNLKNVSVKIPLGTFVAVTG 355 (670)
T ss_dssp -------TTSSC------CC-CCS------------SCCCCCSCEEEEEEEC-------STTCCSEEEEEETTSEEEEEC
T ss_pred -------ccccc------cc-ccc------------ccccccccceeecCcc-------ccccccceeEecCCCEEEEEe
Confidence 00000 00 000 0001112345554432 247999999999999999999
Q ss_pred CCCCcHHHHHHHHH----------------------cCCCCCcceEEECCcee---------------------------
Q 048654 531 PNGAGKSTLLNLLA----------------------GDLSPTEGEVRRSQKLR--------------------------- 561 (723)
Q Consensus 531 pNGsGKSTLlk~L~----------------------Gl~~p~~G~I~~~~~~~--------------------------- 561 (723)
|||||||||+++|+ |+..+ .|.|.+.+...
T Consensus 356 pnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (670)
T 3ux8_A 356 VSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNE 434 (670)
T ss_dssp STTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCcchhhhhhhhHHHHHHhcccch
Confidence 99999999998764 22222 23443332110
Q ss_pred -------------------------EEEEcccc--ccccCc----------------------------cccHHHHHHhh
Q 048654 562 -------------------------IGRYSQHF--VDLLTM----------------------------EETPVSYLLRL 586 (723)
Q Consensus 562 -------------------------ig~~~q~~--~~~~~~----------------------------~~~~~~~~~~~ 586 (723)
.|++++.+ .+...+ ..+..+ .+.+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ltv~e-~l~~ 513 (670)
T 3ux8_A 435 AKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVED-ALDF 513 (670)
T ss_dssp HHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCBTTBCHHHHHTSBHHH-HHHH
T ss_pred hhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheeecCCCHHHHhhCCHHH-HHHH
Confidence 00010000 000000 000000 0111
Q ss_pred CCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC---eEEeccCCCCCCHHHHHHHHHHHH
Q 048654 587 HPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH---ILLLDEPTNHLDMQSIDALADALD 663 (723)
Q Consensus 587 ~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~---lLlLDEPT~~LD~~s~~~l~~~L~ 663 (723)
+.. ......+.+.|..+++......+++.+|||||||||+|||||+.+|+ ||||||||+|||+.+...+.++|+
T Consensus 514 ~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~ 590 (670)
T 3ux8_A 514 FAS---IPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLH 590 (670)
T ss_dssp TTT---CHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred HHH---hhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 111 11224456778889997544457789999999999999999998874 999999999999999999999988
Q ss_pred Hc---CceEEEEecCHHHHHHhcCcCCCcEEEEE------ECCeEEecCCCHHHHH
Q 048654 664 EF---TGGVVLVSHDSRLISRVCDDEERSEIWVV------ENGTVSRFPGTFEEYK 710 (723)
Q Consensus 664 ~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl------~~G~i~~~~g~~~~~~ 710 (723)
++ +.|||+||||++++ ..| |||++| ++|+|+ +.|+++++.
T Consensus 591 ~l~~~g~tvi~vtHd~~~~-~~~-----d~i~~l~~~~g~~~G~i~-~~g~~~~~~ 639 (670)
T 3ux8_A 591 RLVDNGDTVLVIEHNLDVI-KTA-----DYIIDLGPEGGDRGGQIV-AVGTPEEVA 639 (670)
T ss_dssp HHHHTTCEEEEECCCHHHH-TTC-----SEEEEEESSSGGGCCEEE-EEECHHHHH
T ss_pred HHHHCCCEEEEEeCCHHHH-HhC-----CEEEEecCCcCCCCCEEE-EecCHHHHH
Confidence 76 46999999999987 468 499999 899997 468887753
No 9
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=2.1e-52 Score=495.15 Aligned_cols=334 Identities=23% Similarity=0.285 Sum_probs=236.9
Q ss_pred HHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEE
Q 048654 296 AEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP--TLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTL 370 (723)
Q Consensus 296 ~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P--~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TV 370 (723)
...++. +|..+||.....++++.+|||||+|||+||++|+.+| .||||||||++||+..+.+|.++|+++ +.||
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TV 434 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSL 434 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEE
Confidence 445555 6889999744358999999999999999999999999 499999999999999999999877654 7899
Q ss_pred EEEeCCHHHHHhhCCEEEEE------eCCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHH
Q 048654 371 VVVSHDRDFLNTVCTEIIHL------HDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKD 444 (723)
Q Consensus 371 IivsHdl~~l~~iad~Ii~L------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (723)
|+|+||++++. .||+|++| ++|+++ +.|+++++........ .
T Consensus 435 IvVeHdl~~l~-~aD~ii~lgpgaG~~~G~iv-~~g~~~~~~~~~~~~~----~-------------------------- 482 (842)
T 2vf7_A 435 FVVEHDLDVIR-RADWLVDVGPEAGEKGGEIL-YSGPPEGLKHVPESQT----G-------------------------- 482 (842)
T ss_dssp EEECCCHHHHT-TCSEEEEECSSSGGGCCSEE-EEECGGGGGGCTTCHH----H--------------------------
T ss_pred EEEcCCHHHHH-hCCEEEEeCCCcccCCCEEE-EecCHHHHHhchHHHH----H--------------------------
Confidence 99999999875 69999999 688885 6799888753210000 0
Q ss_pred HHHHHHHHHHhhhhccCcccCCCCCCCCCccccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCc
Q 048654 445 RAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGT 524 (723)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge 524 (723)
... ..... .. +. ......++|+++|+++. .|+||||+|+.|+
T Consensus 483 --~~l--------~~~~~------~~--~~-------------~~~~~~~~L~v~~l~~~-------~L~~vsl~i~~Ge 524 (842)
T 2vf7_A 483 --QYL--------FADRH------TE--PH-------------TPREPAGWLELNGVTRN-------NLDNLDVRFPLGV 524 (842)
T ss_dssp --HHH--------HTCCC------CC--CC-------------CCCCCSCEEEEEEEEET-------TEEEEEEEEESSS
T ss_pred --HHh--------hhccc------cc--cc-------------ccCCCCceEEEEeeeec-------ccccceEEEcCCC
Confidence 000 00000 00 00 00113468999999861 5999999999999
Q ss_pred EEEEEcCCCCcHHHHHHH-HHcCC-------CCCcceEE------------ECC---c-eeEEEEccccccccCc-----
Q 048654 525 RVAIVGPNGAGKSTLLNL-LAGDL-------SPTEGEVR------------RSQ---K-LRIGRYSQHFVDLLTM----- 575 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~-L~Gl~-------~p~~G~I~------------~~~---~-~~ig~~~q~~~~~~~~----- 575 (723)
+++|+|+||||||||+++ |+|++ +|+.|.+. ..| . .++.++.|........
T Consensus 525 iv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at 604 (842)
T 2vf7_A 525 MTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMAT 604 (842)
T ss_dssp EEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHH
T ss_pred EEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccccccCcccccceEEEECCeeCCCCccccchh
Confidence 999999999999999996 77554 35344331 011 0 0122333321100000
Q ss_pred ------------------------------------------------------------------------------cc
Q 048654 576 ------------------------------------------------------------------------------EE 577 (723)
Q Consensus 576 ------------------------------------------------------------------------------~~ 577 (723)
..
T Consensus 605 ~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~ 684 (842)
T 2vf7_A 605 YTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGK 684 (842)
T ss_dssp HSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTB
T ss_pred hhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCC
Confidence 00
Q ss_pred cH-------HHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccC---CCeEEeccCC
Q 048654 578 TP-------VSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSK---PHILLLDEPT 647 (723)
Q Consensus 578 ~~-------~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~---p~lLlLDEPT 647 (723)
+. +...+.++.. ......+.++|+.|||......+++.+|||||||||+||++|+.+ |+||||||||
T Consensus 685 si~e~l~ltv~e~l~~~~~---~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPT 761 (842)
T 2vf7_A 685 NIADVLALTVDEAHDFFAD---ESAIFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPT 761 (842)
T ss_dssp CHHHHHTCBHHHHHHHTTT---SHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTT
T ss_pred CHHHHHhccHHHHHHHhhc---chHHHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCC
Confidence 00 0000111111 112345678999999986444577899999999999999999996 7999999999
Q ss_pred CCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEE------ECCeEEecCCCHHHHH
Q 048654 648 NHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVV------ENGTVSRFPGTFEEYK 710 (723)
Q Consensus 648 ~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl------~~G~i~~~~g~~~~~~ 710 (723)
+|||+.++..|.++|+++ +.|||+||||++++ .+|| +|++| ++|+|+ +.|+++++.
T Consensus 762 sGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aD-----rii~L~p~~g~~~G~Iv-~~g~~~el~ 826 (842)
T 2vf7_A 762 TGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASD-----WVLDIGPGAGEDGGRLV-AQGTPAEVA 826 (842)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCS-----EEEEECSSSGGGCCSEE-EEECHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCC-----EEEEECCCCCCCCCEEE-EEcCHHHHH
Confidence 999999999999998776 46999999999999 6784 99999 689997 468888764
No 10
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-48 Score=464.83 Aligned_cols=335 Identities=24% Similarity=0.356 Sum_probs=233.7
Q ss_pred HHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCCC--EEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEE
Q 048654 299 QASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPT--LLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVV 373 (723)
Q Consensus 299 ~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~--lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIiv 373 (723)
+..++|..+||.....++++.+|||||+|||+|||||+++|+ ||||||||+|||+..+.+|.++|+++ +.|||+|
T Consensus 443 ~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 443 KRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 445778889997544579999999999999999999999887 99999999999999999999999876 5799999
Q ss_pred eCCHHHHHhhCCEEEEE------eCCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHH
Q 048654 374 SHDRDFLNTVCTEIIHL------HDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAK 447 (723)
Q Consensus 374 sHdl~~l~~iad~Ii~L------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (723)
|||++++.. ||+|++| ++|+++ +.|+++++...... .... .
T Consensus 523 tHd~~~~~~-aD~ii~lgpgag~~~G~iv-~~G~~~e~~~~~~~-----------------------------~~~~--~ 569 (916)
T 3pih_A 523 EHDEEVIRN-ADHIIDIGPGGGTNGGRVV-FQGTVDELLKNPDS-----------------------------SLTG--E 569 (916)
T ss_dssp CCCHHHHHT-CSEEEEEESSSGGGCSEEE-EEECHHHHHHSCTT-----------------------------CHHH--H
T ss_pred eCCHHHHHh-CCEEEEEcCCcccCCCEEE-EeechhhhhcCchh-----------------------------cchh--h
Confidence 999999876 9999999 889986 67888776321000 0000 0
Q ss_pred HHHHHHHhhhhccCcccCCCCCCCCCccccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEE
Q 048654 448 SAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVA 527 (723)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~va 527 (723)
.. ...... . .+.........+++.+++ ...|+||||+|+.|++++
T Consensus 570 ~l--------~~~~~~-------~-------------~~~~~~~~~~~l~v~~~~-------~~~Lk~Vsl~I~~Geiv~ 614 (916)
T 3pih_A 570 YL--------SGKRKI-------T-------------VNKTRRLPYASLKIKGVR-------HNNLKNIDVEIPLGVFVC 614 (916)
T ss_dssp HH--------HSSSCC-------C-------------CCSSCCCCSSEEEEEEEC-------STTCCSEEEEEESSSEEE
T ss_pred hh--------hccccc-------c-------------cccccccccceEEEeeec-------cccccccceEEcCCcEEE
Confidence 00 000000 0 000001112356666654 136999999999999999
Q ss_pred EEcCCCCcHHHHH---------HHHHcCCCCCcceEEECCce---eE---------------------------------
Q 048654 528 IVGPNGAGKSTLL---------NLLAGDLSPTEGEVRRSQKL---RI--------------------------------- 562 (723)
Q Consensus 528 IvGpNGsGKSTLl---------k~L~Gl~~p~~G~I~~~~~~---~i--------------------------------- 562 (723)
|+|+||||||||+ +++.|...+..+.....+.. .+
T Consensus 615 I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~ 694 (916)
T 3pih_A 615 VTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMT 694 (916)
T ss_dssp EECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTS
T ss_pred EEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccchhhhHHHHHHHhccc
Confidence 9999999999997 45555544433221111110 01
Q ss_pred ----------------------------EEEccccc--cccCc--------------------cccH-------HHHHHh
Q 048654 563 ----------------------------GRYSQHFV--DLLTM--------------------EETP-------VSYLLR 585 (723)
Q Consensus 563 ----------------------------g~~~q~~~--~~~~~--------------------~~~~-------~~~~~~ 585 (723)
|++.+.+. ..+.+ ..+. +...+.
T Consensus 695 ~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~ 774 (916)
T 3pih_A 695 PAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGKNISDILDMTVDEALE 774 (916)
T ss_dssp HHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHH
T ss_pred hHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccCCHHHHhhCCHHHHHH
Confidence 11111100 00000 0000 000111
Q ss_pred hCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC---CeEEeccCCCCCCHHHHHHHHHHH
Q 048654 586 LHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP---HILLLDEPTNHLDMQSIDALADAL 662 (723)
Q Consensus 586 ~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p---~lLlLDEPT~~LD~~s~~~l~~~L 662 (723)
++.. ......+.++|..+||......+++.+|||||||||+|||+|+.+| +||||||||+|||+.++..|+++|
T Consensus 775 f~~~---~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL 851 (916)
T 3pih_A 775 FFKN---IPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVL 851 (916)
T ss_dssp HTTT---CHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHH
T ss_pred HHhc---chhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 1111 1123456678999999765555788999999999999999999875 799999999999999999999999
Q ss_pred HHc---CceEEEEecCHHHHHHhcCcCCCcEEEEE------ECCeEEecCCCHHHHHH
Q 048654 663 DEF---TGGVVLVSHDSRLISRVCDDEERSEIWVV------ENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 663 ~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl------~~G~i~~~~g~~~~~~~ 711 (723)
+++ +.|||+||||++++. .| |+|++| ++|+|+ +.|+++++.+
T Consensus 852 ~~L~~~G~TVIvI~HdL~~i~-~A-----DrIivLgp~gg~~~G~Iv-~~Gtpeel~~ 902 (916)
T 3pih_A 852 HRLVDRGNTVIVIEHNLDVIK-NA-----DHIIDLGPEGGKEGGYIV-ATGTPEEIAK 902 (916)
T ss_dssp HHHHHTTCEEEEECCCHHHHT-TC-----SEEEEEESSSGGGCCEEE-EEESHHHHHS
T ss_pred HHHHhcCCEEEEEeCCHHHHH-hC-----CEEEEecCCCCCCCCEEE-EEcCHHHHHh
Confidence 876 469999999999985 47 499999 899998 4689988653
No 11
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=8.8e-49 Score=464.33 Aligned_cols=336 Identities=26% Similarity=0.331 Sum_probs=235.6
Q ss_pred HHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEE
Q 048654 296 AEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP--TLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTL 370 (723)
Q Consensus 296 ~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P--~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TV 370 (723)
...++ ++|..+||.....++++.+|||||+|||+||++|..+| +||||||||++||+....+|++.|+++ +.||
T Consensus 481 i~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TV 559 (972)
T 2r6f_A 481 IRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTL 559 (972)
T ss_dssp HHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEE
T ss_pred HHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 34555 46899999744358999999999999999999999985 999999999999999999999888754 6899
Q ss_pred EEEeCCHHHHHhhCCEEEEE------eCCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHH
Q 048654 371 VVVSHDRDFLNTVCTEIIHL------HDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKD 444 (723)
Q Consensus 371 IivsHdl~~l~~iad~Ii~L------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (723)
|+|+||++++. .||+|++| ++|+++ +.|+++++...... + ....+
T Consensus 560 IvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv-~~G~~~e~~~~~~s----l---------------------t~~~l-- 610 (972)
T 2r6f_A 560 IVVEHDEDTML-AADYLIDIGPGAGIHGGEVV-AAGTPEEVMNDPNS----L---------------------TGQYL-- 610 (972)
T ss_dssp EEECCCHHHHH-SCSEEEEECSSSGGGCCSEE-EEECTTTTTTCTTC----T---------------------THHHH--
T ss_pred EEEecCHHHHH-hCCEEEEeCCCccCCCCEEE-EecCHHHHHhhhHH----H---------------------HHHHh--
Confidence 99999999986 69999999 788886 67888876431000 0 00000
Q ss_pred HHHHHHHHHHhhhhccCcccCCCCCCCCCccccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCc
Q 048654 445 RAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGT 524 (723)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge 524 (723)
.+.... ..+.. ......++|++++++. ..|+||||+|+.|+
T Consensus 611 -------------~g~~~~-------~~~~~------------~~~~~~~~L~v~~l~~-------~~Lk~Vsl~I~~Ge 651 (972)
T 2r6f_A 611 -------------SGKKFI-------PIPAE------------RRRPDGRWLEVVGARE-------HNLKNVSVKIPLGT 651 (972)
T ss_dssp -------------HTSSCC-------CCCSS------------CCCCCSCEEEEEEECS-------SSCCSEEEEEESSS
T ss_pred -------------cCCccc-------cCccc------------cccccceEEEEecCcc-------cccccceEEEcCCC
Confidence 000000 00000 0011246899999862 25999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHH-cCC-------CCCcce-------------EEECCce-----------------------
Q 048654 525 RVAIVGPNGAGKSTLLNLLA-GDL-------SPTEGE-------------VRRSQKL----------------------- 560 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~-Gl~-------~p~~G~-------------I~~~~~~----------------------- 560 (723)
+++|+|+||||||||+++|+ |.+ .+..|. |.+++..
T Consensus 652 iv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lf 731 (972)
T 2r6f_A 652 FVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVF 731 (972)
T ss_dssp EEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHh
Confidence 99999999999999999853 322 123343 2222210
Q ss_pred -------eEEEEccccccccC-------------------c-------------------------cccH-------HHH
Q 048654 561 -------RIGRYSQHFVDLLT-------------------M-------------------------EETP-------VSY 582 (723)
Q Consensus 561 -------~ig~~~q~~~~~~~-------------------~-------------------------~~~~-------~~~ 582 (723)
.+||++|.|..... . ..+. +..
T Consensus 732 a~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e 811 (972)
T 2r6f_A 732 ASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVED 811 (972)
T ss_dssp HTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHH
T ss_pred ccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHH
Confidence 01222232110000 0 0000 000
Q ss_pred HHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC---CeEEeccCCCCCCHHHHHHHH
Q 048654 583 LLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP---HILLLDEPTNHLDMQSIDALA 659 (723)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p---~lLlLDEPT~~LD~~s~~~l~ 659 (723)
.+.++.. ......+.++|+.|||......+++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.
T Consensus 812 ~l~~~~~---~~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~ 888 (972)
T 2r6f_A 812 ALDFFAS---IPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLL 888 (972)
T ss_dssp HHHHTCS---CHHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHH
T ss_pred HHHHHhc---chhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHH
Confidence 0111111 1122345678999999763445778999999999999999999865 999999999999999999999
Q ss_pred HHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEE------ECCeEEecCCCHHHHH
Q 048654 660 DALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVV------ENGTVSRFPGTFEEYK 710 (723)
Q Consensus 660 ~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl------~~G~i~~~~g~~~~~~ 710 (723)
++|+++ +.|||+||||++++ .+| |+|++| ++|+|+ +.|+++++.
T Consensus 889 ~lL~~L~~~G~TVIvisHdl~~i-~~a-----DrIivL~p~gG~~~G~Iv-~~g~~~el~ 941 (972)
T 2r6f_A 889 DVLHRLVDNGDTVLVIEHNLDVI-KTA-----DYIIDLGPEGGDRGGQIV-AVGTPEEVA 941 (972)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHH-TTC-----SEEEEECSSSTTSCCSEE-EEESHHHHH
T ss_pred HHHHHHHhCCCEEEEEcCCHHHH-HhC-----CEEEEEcCCCCCCCCEEE-EecCHHHHH
Confidence 999876 46999999999997 467 499999 689997 457877653
No 12
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=1.9e-48 Score=463.10 Aligned_cols=338 Identities=24% Similarity=0.332 Sum_probs=235.2
Q ss_pred HHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccC--CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEE
Q 048654 296 AEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQ--PTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTL 370 (723)
Q Consensus 296 ~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~--P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TV 370 (723)
...++ ++|..+||.....++++.+|||||+|||+||++|..+ |+||||||||++||+..+.+|.+.|+++ +.||
T Consensus 498 i~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TV 576 (993)
T 2ygr_A 498 IRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTL 576 (993)
T ss_dssp HHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEE
Confidence 34455 4688899964335899999999999999999999999 5999999999999999999999888754 6899
Q ss_pred EEEeCCHHHHHhhCCEEEEE------eCCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHH
Q 048654 371 VVVSHDRDFLNTVCTEIIHL------HDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKD 444 (723)
Q Consensus 371 IivsHdl~~l~~iad~Ii~L------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (723)
|+|+||++++. .||+|++| ++|+++ +.|+++++...... + ..
T Consensus 577 IvVeHdl~~i~-~ADrIi~Lgp~aG~~gG~iv-~~G~~~e~~~~~~~----l--------------------------t~ 624 (993)
T 2ygr_A 577 IVVEHDEDTIE-HADWIVDIGPGAGEHGGRIV-HSGPYDELLRNKDS----I--------------------------TG 624 (993)
T ss_dssp EEECCCHHHHH-TCSEEEEECSSSGGGCCSCC-EEECHHHHHHCTTC----H--------------------------HH
T ss_pred EEECCCHHHHH-hCCEEEEecCccccCCCEEE-EeeCHHHhhhhhHH----H--------------------------HH
Confidence 99999999986 69999999 688885 67898776431000 0 00
Q ss_pred HHHHHHHHHHhhhhccCcccCCCCCCCCCccccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceeceEEEEecCc
Q 048654 445 RAKSAAAKEASKNKAKGKVDEDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGT 524 (723)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge 524 (723)
... .+.... . .+.. ..+ ....++|++++++. ..|+||||+|+.|+
T Consensus 625 --~~l--------~g~~~~----~---~~~~----------~~~-~~~~~~L~v~~l~~-------~~Lk~Vsl~I~~Ge 669 (993)
T 2ygr_A 625 --AYL--------SGRESI----E---IPAI----------RRS-VDPRRQLTVVGARE-------HNLRGIDVSFPLGV 669 (993)
T ss_dssp --HHH--------HTSSCC----C---CCSS----------CCC-CCSSSEEEEEEECS-------TTCCSEEEEEESSS
T ss_pred --HHh--------ccCccc----c---Cccc----------ccc-CCCCceEEEecCcc-------ccccCceEEECCCC
Confidence 000 000000 0 0000 000 00136899999862 25999999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHH-cC----CC---CCcceE-EECCc---eeE------------------------------
Q 048654 525 RVAIVGPNGAGKSTLLNLLA-GD----LS---PTEGEV-RRSQK---LRI------------------------------ 562 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~-Gl----~~---p~~G~I-~~~~~---~~i------------------------------ 562 (723)
+++|+|+||||||||+++|+ |. +. +..|.+ .+.+. .++
T Consensus 670 ivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lf 749 (993)
T 2ygr_A 670 LTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLF 749 (993)
T ss_dssp EEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchhhhhhHHHHHHHHh
Confidence 99999999999999999853 32 22 234543 22221 011
Q ss_pred ---------EEEcccccccc---------------------C-c----------------------cccH-------HHH
Q 048654 563 ---------GRYSQHFVDLL---------------------T-M----------------------EETP-------VSY 582 (723)
Q Consensus 563 ---------g~~~q~~~~~~---------------------~-~----------------------~~~~-------~~~ 582 (723)
||.+|.|.... . + ..+. +..
T Consensus 750 a~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e 829 (993)
T 2ygr_A 750 AATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEE 829 (993)
T ss_dssp HTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHH
T ss_pred ccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccCCCHHHHhhccHHH
Confidence 22222110000 0 0 0000 000
Q ss_pred HHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC---CeEEeccCCCCCCHHHHHHHH
Q 048654 583 LLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP---HILLLDEPTNHLDMQSIDALA 659 (723)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p---~lLlLDEPT~~LD~~s~~~l~ 659 (723)
.+.++.. ......+.++|+.|||......+++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.
T Consensus 830 ~l~~~~~---~~~~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~ 906 (993)
T 2ygr_A 830 AAEFFEP---IAGVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLL 906 (993)
T ss_dssp HHHHSTT---CHHHHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHH
T ss_pred HHHHhhc---chHHHHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHH
Confidence 0111111 0112335678999999763445778999999999999999999865 999999999999999999999
Q ss_pred HHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEE------ECCeEEecCCCHHHHHH
Q 048654 660 DALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVV------ENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 660 ~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl------~~G~i~~~~g~~~~~~~ 711 (723)
++|+++ +.|||+||||++++ .+| |+|++| ++|+|+ +.|+++++..
T Consensus 907 ~lL~~L~~~G~TVIvisHdl~~i-~~a-----DrIivL~p~gg~~~G~Iv-~~G~~~el~~ 960 (993)
T 2ygr_A 907 NVINGLVDKGNTVIVIEHNLDVI-KTS-----DWIIDLGPEGGAGGGTVV-AQGTPEDVAA 960 (993)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHH-TTC-----SEEEEEESSSTTSCSEEE-EEECHHHHHH
T ss_pred HHHHHHHhCCCEEEEEcCCHHHH-HhC-----CEEEEECCCcCCCCCEEE-EecCHHHHHh
Confidence 999876 46999999999997 577 499999 689997 4688887653
No 13
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.2e-43 Score=372.91 Aligned_cols=209 Identities=26% Similarity=0.386 Sum_probs=170.4
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
.++|+++||+++|++. ..+|+||||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 5 ~~~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~ 83 (275)
T 3gfo_A 5 DYILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83 (275)
T ss_dssp CEEEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHH
T ss_pred CcEEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHh
Confidence 4589999999999753 35899999999999999999999999999999999999999999998763
Q ss_pred eeEEEEccccccc---cCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc
Q 048654 560 LRIGRYSQHFVDL---LTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS 636 (723)
Q Consensus 560 ~~ig~~~q~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~ 636 (723)
..+||++|++... +++.++... ...... .......+.+.++|+.+||.... ++++.+|||||||||+|||||+.
T Consensus 84 ~~ig~v~Q~~~~~~~~~tv~e~l~~-~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgGqkQRv~iAraL~~ 160 (275)
T 3gfo_A 84 ESIGIVFQDPDNQLFSASVYQDVSF-GAVNMK-LPEDEIRKRVDNALKRTGIEHLK-DKPTHCLSFGQKKRVAIAGVLVM 160 (275)
T ss_dssp HSEEEECSSGGGTCCSSBHHHHHHH-HHHTSC-CCHHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHHHHHHHHTT
T ss_pred CcEEEEEcCcccccccCcHHHHHHH-HHHHcC-CCHHHHHHHHHHHHHHcCCchhh-cCCcccCCHHHHHHHHHHHHHHc
Confidence 2489999975322 233333221 111111 10001235688899999997554 46779999999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| ||++|++|+|+ +.|+++++..
T Consensus 161 ~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d-----rv~~l~~G~i~-~~g~~~~~~~ 233 (275)
T 3gfo_A 161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCD-----NVFVMKEGRVI-LQGNPKEVFA 233 (275)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCS-----EEEEEETTEEE-EEECHHHHTH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCC-----EEEEEECCEEE-EECCHHHHhc
Confidence 99999999999999999999999998775 3589999999999999995 99999999997 4688887643
No 14
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.7e-43 Score=383.23 Aligned_cols=210 Identities=27% Similarity=0.372 Sum_probs=172.2
Q ss_pred CCCeEEEEEEEEEcCCC--cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------
Q 048654 492 TPPLLQLIEVSFSYPNR--EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------- 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~--~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------- 559 (723)
..++|+++||++.|++. ...+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 45799999999999642 235899999999999999999999999999999999999999999998763
Q ss_pred ----eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 560 ----LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 560 ----~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
..+||++|++. ..+++.++.... +...... .....+++.++|+.+||.... ++++.+|||||||||+||||
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~-~~~~~~~-~~~~~~~v~~lL~~vgL~~~~-~~~~~~LSGGqkQRVaIArA 177 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALP-LELDNTP-KDEVKRRVTELLSLVGLGDKH-DSYPSNLSGGQKQRVAIARA 177 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHH-HHHSCCC-HHHHHHHHHHHHHHHTCGGGT-TCCTTTSCHHHHHHHHHHHH
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHH-HHhcCCC-HHHHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHHH
Confidence 25999999753 334454543322 2222110 011235688899999997654 46779999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|+.+|+||||||||++||+.+...++++|+++ +.|||+||||++++..+|| ||++|++|+|+. .|+++++
T Consensus 178 L~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aD-----rv~vl~~G~iv~-~g~~~ev 251 (366)
T 3tui_C 178 LASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICD-----CVAVISNGELIE-QDTVSEV 251 (366)
T ss_dssp TTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCS-----EEEEEETTEEEE-CCBHHHH
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHH
Confidence 99999999999999999999999999999876 4699999999999999995 999999999984 6888775
Q ss_pred H
Q 048654 710 K 710 (723)
Q Consensus 710 ~ 710 (723)
.
T Consensus 252 ~ 252 (366)
T 3tui_C 252 F 252 (366)
T ss_dssp H
T ss_pred H
Confidence 4
No 15
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.4e-43 Score=364.64 Aligned_cols=206 Identities=31% Similarity=0.422 Sum_probs=164.3
Q ss_pred eEEEEEEEEEcCCCc--ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 495 LLQLIEVSFSYPNRE--DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~--~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
+|+++||+++|++.. ..+|+||||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 589999999997432 35899999999999999999999999999999999999999999998773
Q ss_pred --eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHH
Q 048654 560 --LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 560 --~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAr 632 (723)
..+||++|++. ..+++.++..... ... ...... ..+.+.++|+.+++.....++++.+|||||||||+|||
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~-~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAr 158 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPL-IFK-YRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHH-HTC-SSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHH-Hhh-hccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHH
Confidence 14999999753 2334444432211 111 001111 23457789999999764435678999999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||+.+|+||||||||+|||+.+...+.++|+++ +.|||+||||++.+ .+|| +|++|++|+|+. .++.++
T Consensus 159 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d-----~i~~l~~G~i~~-~~~~~~ 231 (235)
T 3tif_A 159 ALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGE-----RIIYLKDGEVER-EEKLRG 231 (235)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSS-----EEEEEETTEEEE-EEECC-
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCC-----EEEEEECCEEEE-EcChhh
Confidence 999999999999999999999999999999876 46999999999965 6884 999999999975 455555
Q ss_pred H
Q 048654 709 Y 709 (723)
Q Consensus 709 ~ 709 (723)
+
T Consensus 232 ~ 232 (235)
T 3tif_A 232 F 232 (235)
T ss_dssp -
T ss_pred h
Confidence 4
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.2e-42 Score=361.84 Aligned_cols=207 Identities=29% Similarity=0.352 Sum_probs=170.3
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------ee
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LR 561 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ 561 (723)
.++|+++||++.|++ ..+|+||||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 9 ~~~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 86 (266)
T 4g1u_C 9 VALLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALART 86 (266)
T ss_dssp CCEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHH
T ss_pred cceEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhhe
Confidence 368999999999975 35899999999999999999999999999999999999999999998774 14
Q ss_pred EEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc-----
Q 048654 562 IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS----- 636 (723)
Q Consensus 562 ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~----- 636 (723)
++|++|.....+ ..++.+.+.............+.+.++++.+++.... ++++.+|||||||||+|||||+.
T Consensus 87 i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~QRv~iAraL~~~~~~~ 163 (266)
T 4g1u_C 87 RAVMRQYSELAF--PFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALA-QRDYRVLSGGEQQRVQLARVLAQLWQPQ 163 (266)
T ss_dssp EEEECSCCCCCS--CCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTT-TSBGGGCCHHHHHHHHHHHHHHHTCCSS
T ss_pred EEEEecCCccCC--CCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHh-cCCcccCCHHHHHHHHHHHHHhcccccC
Confidence 899999743211 1232222221111111122456788999999997654 46779999999999999999999
Q ss_pred -CCCeEEeccCCCCCCHHHHHHHHHHHHHcC----ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 637 -KPHILLLDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 637 -~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~----~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+|| ||++|++|+|+. .|+++++.
T Consensus 164 ~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d-----~v~vl~~G~i~~-~g~~~~~~ 236 (266)
T 4g1u_C 164 PTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYAD-----RIMLLAQGKLVA-CGTPEEVL 236 (266)
T ss_dssp CCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHC
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHh
Confidence 999999999999999999999999998762 489999999999999995 999999999974 68888764
No 17
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=6.4e-43 Score=365.36 Aligned_cols=208 Identities=24% Similarity=0.357 Sum_probs=168.7
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
.++|+++||+++|++ ..+|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 4 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (262)
T 1b0u_A 4 ENKLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81 (262)
T ss_dssp -CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEE
T ss_pred CceEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccc
Confidence 358999999999975 35899999999999999999999999999999999999999999988652
Q ss_pred -----------eeEEEEcccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC-CCcCCCCCCCHHHH
Q 048654 560 -----------LRIGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH-NHLTPIAKLSGGQK 625 (723)
Q Consensus 560 -----------~~ig~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~-~~~~~i~~LSGGqk 625 (723)
..++|++|+. ...+++.++.......... .......+.+.++|+.+||... . ++++.+||||||
T Consensus 82 ~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~~LSgGq~ 159 (262)
T 1b0u_A 82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG-LSKHDARERALKYLAKVGIDERAQ-GKYPVHLSGGQQ 159 (262)
T ss_dssp ESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHTTCCHHHH-TSCGGGSCHHHH
T ss_pred ccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcC-CCHHHHHHHHHHHHHHcCCCchhh-cCCcccCCHHHH
Confidence 1389999974 2233444443221111111 1000123567889999999754 4 467799999999
Q ss_pred HHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEec
Q 048654 626 ARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRF 702 (723)
Q Consensus 626 qRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~ 702 (723)
|||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+|+.
T Consensus 160 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d-----~v~~l~~G~i~~- 233 (262)
T 1b0u_A 160 QRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS-----HVIFLHQGKIEE- 233 (262)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCS-----EEEEEETTEEEE-
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-
Confidence 9999999999999999999999999999999999999876 4689999999999999995 999999999974
Q ss_pred CCCHHHHH
Q 048654 703 PGTFEEYK 710 (723)
Q Consensus 703 ~g~~~~~~ 710 (723)
.|+++++.
T Consensus 234 ~g~~~~~~ 241 (262)
T 1b0u_A 234 EGDPEQVF 241 (262)
T ss_dssp EECHHHHH
T ss_pred eCCHHHHH
Confidence 57777654
No 18
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.4e-42 Score=374.20 Aligned_cols=224 Identities=23% Similarity=0.352 Sum_probs=175.9
Q ss_pred CccceEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChH
Q 048654 162 NVKDITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237 (723)
Q Consensus 162 ~~~~I~l~nls~~y~~----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~ 237 (723)
..++|+++||+++|++ .++|+||||+|++|+++||+||||||||||+|+|+|+.. |.+|+|.+.++++......
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i~~~~~~ 98 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSES 98 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECSSCCHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHH
Confidence 3457999999999964 479999999999999999999999999999999999865 4678888888877644322
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCC
Q 048654 238 AIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRP 317 (723)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 317 (723)
. ...++..++++.+.... .....+.+++..... +......+..+++.++|+.+||.+ ..+++
T Consensus 99 ~----------~~~~r~~Ig~v~Q~~~l------~~~~TV~env~~~~~-~~~~~~~~~~~~v~~lL~~vgL~~-~~~~~ 160 (366)
T 3tui_C 99 E----------LTKARRQIGMIFQHFNL------LSSRTVFGNVALPLE-LDNTPKDEVKRRVTELLSLVGLGD-KHDSY 160 (366)
T ss_dssp H----------HHHHHTTEEEECSSCCC------CTTSCHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHTCGG-GTTCC
T ss_pred H----------HHHHhCcEEEEeCCCcc------CCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCch-HhcCC
Confidence 1 12233445555432211 112234444443322 222344566788999999999974 56899
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
+.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||||++|++|
T Consensus 161 ~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G 240 (366)
T 3tui_C 161 PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNG 240 (366)
T ss_dssp TTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETT
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999988754 689999999999999999999999999
Q ss_pred EEEEecCChhhHH
Q 048654 394 KLHFYRGNFDDFE 406 (723)
Q Consensus 394 ~i~~~~g~~~~~~ 406 (723)
+++ ..|+..++.
T Consensus 241 ~iv-~~g~~~ev~ 252 (366)
T 3tui_C 241 ELI-EQDTVSEVF 252 (366)
T ss_dssp EEE-ECCBHHHHH
T ss_pred EEE-EEcCHHHHH
Confidence 997 458776654
No 19
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.4e-42 Score=362.46 Aligned_cols=208 Identities=24% Similarity=0.338 Sum_probs=169.9
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------e
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-------------L 560 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-------------~ 560 (723)
++|+++||++.|++ ..+|+||||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. .
T Consensus 23 ~~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 23 QMIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp CSEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred heEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 47999999999975 35899999999999999999999999999999999999999999998763 1
Q ss_pred eEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
.++|++|+.. ..+++.++.......... .......+.+.++|+.+||.... ++++.+|||||||||+|||||+.+|
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgGqkQRv~lAraL~~~p 178 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRK-WPREKAEAKAMELLDKVGLKDKA-HAYPDSLSGGQAQRVAIARALAMEP 178 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHCCCchHh-cCChhhCCHHHHHHHHHHHHHHCCC
Confidence 4899999742 233444443221111111 10001234678899999997554 4677999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++..
T Consensus 179 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d-----~v~~l~~G~i~~-~g~~~~~~~ 248 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGD-----RVLFMDGGYIIE-EGKPEDLFD 248 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCC-----EEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999876 4699999999999999995 999999999974 588877653
No 20
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=5.5e-42 Score=358.03 Aligned_cols=220 Identities=25% Similarity=0.345 Sum_probs=169.6
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|+++++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.+.++. .....
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~-~~~~~------ 94 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLK-AKDTN------ 94 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESS-STTCC------
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECC-Ccccc------
Confidence 6999999999999999999999999999999999999999999999999865 46788888777653 11100
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
...++..++++.+.... .....+.+++................+++.++|+.+|+.. ..++++.+||||
T Consensus 95 ----~~~~~~~i~~v~Q~~~l------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgG 163 (263)
T 2olj_A 95 ----LNKVREEVGMVFQRFNL------FPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKD-KAHAYPDSLSGG 163 (263)
T ss_dssp ----HHHHHHHEEEECSSCCC------CTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGG-GTTSCGGGSCHH
T ss_pred ----HHHHhCcEEEEeCCCcC------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCch-HhcCChhhCCHH
Confidence 01123344444332111 1112333433321111111223344678899999999964 568999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGN 401 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~ 401 (723)
|||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++. .|+
T Consensus 164 qkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g~ 242 (263)
T 2olj_A 164 QAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIE-EGK 242 (263)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EEC
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-ECC
Confidence 999999999999999999999999999999999999998765 6799999999999999999999999999974 477
Q ss_pred hhhH
Q 048654 402 FDDF 405 (723)
Q Consensus 402 ~~~~ 405 (723)
.+++
T Consensus 243 ~~~~ 246 (263)
T 2olj_A 243 PEDL 246 (263)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 21
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.1e-42 Score=376.58 Aligned_cols=207 Identities=29% Similarity=0.367 Sum_probs=168.2
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------e
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-------------L 560 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-------------~ 560 (723)
++|+++||+++|++ ..+|+||||+|.+||+++|+||||||||||||+|+|+++|++|+|.++++ .
T Consensus 3 ~~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 3 AALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred cEEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 37999999999975 35899999999999999999999999999999999999999999998663 2
Q ss_pred eEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP 638 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p 638 (723)
.+||++|++. ..+++.++.. +.+... ........+++.++|+.+||.+.. ++++.+|||||||||+|||||+.+|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~-~~l~~~-~~~~~~~~~~v~~~l~~~gL~~~~-~r~~~~LSGGq~QRValArAL~~~P 157 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIA-YGLGNG-KGRTAQERQRIEAMLELTGISELA-GRYPHELSGGQQQRAALARALAPDP 157 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHH-TTSTTS-SCCSHHHHHHHHHHHHHHTCGGGT-TSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CEEEEeCCCcCCCCCCHHHHHH-HHHHHc-CCChHHHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHHHHHcCC
Confidence 4899999752 3334444321 111110 000111345688999999998655 4677999999999999999999999
Q ss_pred CeEEeccCCCCCCHHHHHHHHHHHHH----cCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 639 HILLLDEPTNHLDMQSIDALADALDE----FTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 639 ~lLlLDEPT~~LD~~s~~~l~~~L~~----~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
+||||||||++||+..+..+.+.|.+ .+.|||+||||++++..+|| ||++|++|+|+. .|+++++..
T Consensus 158 ~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aD-----ri~vl~~G~i~~-~g~~~el~~ 228 (359)
T 3fvq_A 158 ELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYAD-----RIAVMKQGRILQ-TASPHELYR 228 (359)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCC-----EEEEEECCEEEE-EeCHHHHHh
Confidence 99999999999999999988876544 35799999999999999995 999999999974 588887654
No 22
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=7.6e-42 Score=357.20 Aligned_cols=223 Identities=28% Similarity=0.399 Sum_probs=170.5
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecC----------C
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVG----------D 234 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~----------~ 234 (723)
+|+++||+++|+++++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.+.++.. .
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccccccccccccc
Confidence 5999999999999999999999999999999999999999999999999865 457888887766531 1
Q ss_pred ChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcccc
Q 048654 235 DRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQ 314 (723)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~ 314 (723)
... ....++..++++.+.... .....+.+++.................++.++|+.+|+.....
T Consensus 84 ~~~----------~~~~~~~~i~~v~Q~~~l------~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 84 DKN----------QLRLLRTRLTMVFQHFNL------WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp CHH----------HHHHHHHHEEEECSSCCC------CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred Chh----------hHHHHhcceEEEecCccc------CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhh
Confidence 111 111223344454332111 1122333443321111111223344678899999999974315
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEe
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~ 391 (723)
++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|+
T Consensus 148 ~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~ 227 (262)
T 1b0u_A 148 GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLH 227 (262)
T ss_dssp TSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 7999999999999999999999999999999999999999999999988764 6799999999999999999999999
Q ss_pred CCEEEEecCChhhHH
Q 048654 392 DQKLHFYRGNFDDFE 406 (723)
Q Consensus 392 ~G~i~~~~g~~~~~~ 406 (723)
+|+++. .|+.+++.
T Consensus 228 ~G~i~~-~g~~~~~~ 241 (262)
T 1b0u_A 228 QGKIEE-EGDPEQVF 241 (262)
T ss_dssp TTEEEE-EECHHHHH
T ss_pred CCEEEE-eCCHHHHH
Confidence 999974 47766553
No 23
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7e-42 Score=353.05 Aligned_cols=206 Identities=20% Similarity=0.297 Sum_probs=167.8
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------e
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------L 560 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~ 560 (723)
.++|+++||+++|++ ..+|+||||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. .
T Consensus 4 ~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81 (240)
T ss_dssp SEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHT
T ss_pred CceEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhC
Confidence 468999999999975 35899999999999999999999999999999999999999999998763 1
Q ss_pred eEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCC-CCCCCCcCCCCCCCHHHHHHHHHHHHHccC
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFG-LPSHNHLTPIAKLSGGQKARVVFTSISMSK 637 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g-l~~~~~~~~i~~LSGGqkqRv~lAral~~~ 637 (723)
.++|++|+.. ..+++.++.. .............+.+..+++.|+ +.... ++++.+|||||||||+|||||+.+
T Consensus 82 ~i~~v~q~~~l~~~ltv~enl~---~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~~~LSgGq~qrv~lAraL~~~ 157 (240)
T 1ji0_A 82 GIALVPEGRRIFPELTVYENLM---MGAYNRKDKEGIKRDLEWIFSLFPRLKERL-KQLGGTLSGGEQQMLAIGRALMSR 157 (240)
T ss_dssp TEEEECSSCCCCTTSBHHHHHH---GGGTTCCCSSHHHHHHHHHHHHCHHHHTTT-TSBSSSSCHHHHHHHHHHHHHTTC
T ss_pred CEEEEecCCccCCCCcHHHHHH---HhhhcCCCHHHHHHHHHHHHHHcccHhhHh-cCChhhCCHHHHHHHHHHHHHHcC
Confidence 3999999742 2233333321 111111111112356778899994 86554 467799999999999999999999
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
|+||||||||+|||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+++. .|+++++.
T Consensus 158 p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d-----~v~~l~~G~i~~-~g~~~~~~ 227 (240)
T 1ji0_A 158 PKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAH-----YGYVLETGQIVL-EGKASELL 227 (240)
T ss_dssp CSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCS-----EEEEEETTEEEE-EEEHHHHH
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHh
Confidence 9999999999999999999999999876 3589999999999999995 999999999974 57777764
No 24
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=3.3e-42 Score=351.92 Aligned_cols=197 Identities=25% Similarity=0.326 Sum_probs=162.2
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------------
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-------------- 559 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-------------- 559 (723)
++|+++|++++|++ ..+|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 3 ~~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 3 EILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred cEEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 47999999999975 35899999999999999999999999999999999999999999998752
Q ss_pred -eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc
Q 048654 560 -LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS 636 (723)
Q Consensus 560 -~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~ 636 (723)
..++|++|+.. ..+++.++... ....... ......+.+.++|+.+||.+.. ++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~-~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~laral~~ 157 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIV-PMLKMGK-PKKEAKERGEYLLSELGLGDKL-SRKPYELSGGEQQRVAIARALAN 157 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHH-HHHHTTC-CHHHHHHHHHHHHHHTTCTTCT-TCCGGGSCHHHHHHHHHHHHTTT
T ss_pred hCcEEEEecCcccCCCCCHHHHHHh-HHHHcCC-CHHHHHHHHHHHHHHcCCchhh-hCChhhCCHHHHHHHHHHHHHHc
Confidence 24899999742 23344444322 1111111 0001235678899999997654 46779999999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEe
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSR 701 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~ 701 (723)
+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++ .+|| +|++|++|+++.
T Consensus 158 ~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d-----~v~~l~~G~i~~ 219 (224)
T 2pcj_A 158 EPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTH-----RTLEMKDGKVVG 219 (224)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSS-----EEEEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCC-----EEEEEECCEEEE
Confidence 99999999999999999999999999876 46999999999988 7884 999999999974
No 25
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=5.6e-42 Score=360.12 Aligned_cols=222 Identities=22% Similarity=0.331 Sum_probs=171.2
Q ss_pred cceEEEeEEEEeCC-eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 164 KDITIDNFSVAARG-KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 164 ~~I~l~nls~~y~~-~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
++|+++||+++|++ .++|+||||+|++|+++||+||||||||||+++|+|+.. |..|+|.+.++++... ..
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~-~~----- 77 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYS-RK----- 77 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCS-HH-----
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcc-cc-----
Confidence 36999999999975 569999999999999999999999999999999999865 4678888887766321 11
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
....++..++++.+.... ......+.+++..... .......+..+++.++|+.+|+. ...++++.+||
T Consensus 78 -----~~~~~~~~ig~v~Q~~~~-----~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS 145 (275)
T 3gfo_A 78 -----GIMKLRESIGIVFQDPDN-----QLFSASVYQDVSFGAV-NMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLS 145 (275)
T ss_dssp -----HHHHHHHSEEEECSSGGG-----TCCSSBHHHHHHHHHH-TSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSC
T ss_pred -----cHHHHhCcEEEEEcCccc-----ccccCcHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCC
Confidence 111233444444332100 0001233343332221 11223445677899999999996 45689999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
|||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 146 gGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~- 224 (275)
T 3gfo_A 146 FGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVIL- 224 (275)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEE-
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-
Confidence 99999999999999999999999999999999999999888654 6799999999999999999999999999974
Q ss_pred cCChhhHH
Q 048654 399 RGNFDDFE 406 (723)
Q Consensus 399 ~g~~~~~~ 406 (723)
.|+.+++.
T Consensus 225 ~g~~~~~~ 232 (275)
T 3gfo_A 225 QGNPKEVF 232 (275)
T ss_dssp EECHHHHT
T ss_pred ECCHHHHh
Confidence 58877654
No 26
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.2e-41 Score=347.60 Aligned_cols=212 Identities=26% Similarity=0.349 Sum_probs=164.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++|++++|+++++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.++++.......
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~------ 75 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVDYTNEKE------ 75 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECCSSCHHH------
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHH------
Confidence 5999999999999999999999999999999999999999999999999865 46788888777664322211
Q ss_pred hhHHHHHHH-HHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 245 AHEELVKLR-EEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 245 ~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
...++ ..++++.+.... .....+.+++.... ...........+++.++++.+|+.+ ..++++.+|||
T Consensus 76 ----~~~~~~~~i~~v~q~~~l------~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSg 143 (224)
T 2pcj_A 76 ----LSLLRNRKLGFVFQFHYL------IPELTALENVIVPM-LKMGKPKKEAKERGEYLLSELGLGD-KLSRKPYELSG 143 (224)
T ss_dssp ----HHHHHHHHEEEECSSCCC------CTTSCHHHHHHHHH-HHTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCH
T ss_pred ----HHHHHhCcEEEEecCccc------CCCCCHHHHHHhHH-HHcCCCHHHHHHHHHHHHHHcCCch-hhhCChhhCCH
Confidence 11122 334444332111 11123334333221 1112222345678899999999974 45799999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++ .+||+|++|++|+++.
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~ 219 (224)
T 2pcj_A 144 GEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVG 219 (224)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999988764 67999999999998 7999999999999964
No 27
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.6e-42 Score=374.99 Aligned_cols=206 Identities=27% Similarity=0.343 Sum_probs=171.5
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~ 565 (723)
+|+++||+++|++ ..+|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++++ ..+||+
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~V 80 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMV 80 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEE
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEE
Confidence 5899999999975 35899999999999999999999999999999999999999999998764 359999
Q ss_pred cccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 566 SQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 566 ~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
+|++ +..+++.++.... +...... .....+++.++|+.++|.... ++++.+|||||||||+|||||+.+|+||||
T Consensus 81 fQ~~~l~p~ltV~eni~~~-~~~~~~~-~~~~~~~v~~~l~~~~L~~~~-~r~p~~LSGGqrQRVaiArAL~~~P~lLLL 157 (381)
T 3rlf_A 81 FQSYALYPHLSVAENMSFG-LKLAGAK-KEVINQRVNQVAEVLQLAHLL-DRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157 (381)
T ss_dssp CTTCCCCTTSCHHHHHTHH-HHHTTCC-HHHHHHHHHHHHHHTTCGGGT-TCCGGGSCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred ecCCcCCCCCCHHHHHHHH-HHHcCCC-HHHHHHHHHHHHHHcCCchhh-cCChhHCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9975 3345555553322 2222110 001245688999999998655 467799999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 644 DEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||++||+..+..+.+.|+++ +.|||+||||++++..+|| ||++|++|+|+. .|+++++..
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aD-----ri~vl~~G~i~~-~g~~~~l~~ 223 (381)
T 3rlf_A 158 DEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD-----KIVVLDAGRVAQ-VGKPLELYH 223 (381)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCC-----EEEEEECCEEEE-EeCHHHHHh
Confidence 9999999999999999888765 5699999999999999995 999999999975 588887643
No 28
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.4e-42 Score=358.39 Aligned_cols=208 Identities=23% Similarity=0.300 Sum_probs=169.8
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc----------eeE
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK----------LRI 562 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~----------~~i 562 (723)
.++|+++||++.|++ ..+|++|||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..+
T Consensus 13 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i 90 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLI 90 (256)
T ss_dssp -CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTE
T ss_pred CCeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcE
Confidence 468999999999975 35899999999999999999999999999999999999999999998763 248
Q ss_pred EEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 563 GRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 563 g~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
+|++|... ..+++.++.... ...+... .....+.+.++|+.+||.... ++++.+|||||||||+|||||+.+|+|
T Consensus 91 ~~v~q~~~l~~~ltv~enl~~~-~~~~~~~-~~~~~~~~~~~l~~~gL~~~~-~~~~~~LSgGq~qRv~lAraL~~~p~l 167 (256)
T 1vpl_A 91 SYLPEEAGAYRNMQGIEYLRFV-AGFYASS-SSEIEEMVERATEIAGLGEKI-KDRVSTYSKGMVRKLLIARALMVNPRL 167 (256)
T ss_dssp EEECTTCCCCTTSBHHHHHHHH-HHHHCCC-HHHHHHHHHHHHHHHCCGGGG-GSBGGGCCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEcCCCCCCCCCcHHHHHHHH-HHHcCCC-hHHHHHHHHHHHHHCCCchHh-cCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99999742 233444443221 1111110 001134678899999997544 467799999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||||+|||+.++..+.++|.++ +.|||+||||++++..+|| +|++|++|+++. .|+++++.+
T Consensus 168 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d-----~v~~l~~G~i~~-~g~~~~~~~ 235 (256)
T 1vpl_A 168 AILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCD-----RIALIHNGTIVE-TGTVEELKE 235 (256)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCS-----EEEEEETTEEEE-EEEHHHHHH
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCC-----EEEEEECCEEEE-ecCHHHHHH
Confidence 9999999999999999999999876 3689999999999999885 999999999974 578777653
No 29
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.2e-41 Score=350.22 Aligned_cols=221 Identities=23% Similarity=0.312 Sum_probs=165.6
Q ss_pred ceEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 165 DITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 165 ~I~l~nls~~y~~----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
+|+++||+++|++ .++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.+.++........
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~- 77 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDEL- 77 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHH-
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHH-
Confidence 4899999999963 479999999999999999999999999999999999865 467888888877654332211
Q ss_pred HHHHhhHHHHHH-HHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHH--hcCchHHHHHHHHHHHhCCCCccccCCC
Q 048654 241 AVVSAHEELVKL-REEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQ--ILGSDAAEAQASKILAGLGFTKEMQGRP 317 (723)
Q Consensus 241 ~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 317 (723)
..+ +..++++.+.... .....+.+++........ .........++.++++.+|+.+...+++
T Consensus 78 ---------~~~~~~~i~~v~Q~~~l------~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 142 (235)
T 3tif_A 78 ---------TKIRRDKIGFVFQQFNL------IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK 142 (235)
T ss_dssp ---------HHHHHHHEEEECTTCCC------CTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC
T ss_pred ---------HHHhhccEEEEecCCcc------CCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC
Confidence 111 2234444332111 111233343332211000 1223455678899999999975445799
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
+.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++.+ .+||+|++|++|
T Consensus 143 ~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~-~~~d~i~~l~~G 221 (235)
T 3tif_A 143 PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDG 221 (235)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHH-TTSSEEEEEETT
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHH-HhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999988754 68999999999965 789999999999
Q ss_pred EEEEecCChhhH
Q 048654 394 KLHFYRGNFDDF 405 (723)
Q Consensus 394 ~i~~~~g~~~~~ 405 (723)
+++. .++.+++
T Consensus 222 ~i~~-~~~~~~~ 232 (235)
T 3tif_A 222 EVER-EEKLRGF 232 (235)
T ss_dssp EEEE-EEECC--
T ss_pred EEEE-EcChhhh
Confidence 9974 3544443
No 30
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.2e-42 Score=360.33 Aligned_cols=206 Identities=24% Similarity=0.276 Sum_probs=167.4
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------e
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------L 560 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------~ 560 (723)
.++|+++||+++|++ ..+|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++. .
T Consensus 5 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (257)
T 1g6h_A 5 MEILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82 (257)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CcEEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhC
Confidence 358999999999975 35899999999999999999999999999999999999999999998763 1
Q ss_pred eEEEEccccc--cccCccccHHHHHHhh-CCC-----------CCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHH
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRL-HPD-----------QEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKA 626 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkq 626 (723)
.++|++|+.. ..+++.++... .... ... .......+.+.++|+.+||.... ++++.+|||||||
T Consensus 83 ~i~~v~q~~~l~~~~tv~enl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkQ 160 (257)
T 1g6h_A 83 GIVRTFQTPQPLKEMTVLENLLI-GEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLY-DRKAGELSGGQMK 160 (257)
T ss_dssp TEEECCCCCGGGGGSBHHHHHHG-GGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHH
T ss_pred CEEEEccCCccCCCCcHHHHHHH-HHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhh-CCCchhCCHHHHH
Confidence 4899999742 22333333211 0000 000 00001235678899999997544 4678999999999
Q ss_pred HHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecC
Q 048654 627 RVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFP 703 (723)
Q Consensus 627 Rv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~ 703 (723)
||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+++. .
T Consensus 161 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d-----~v~~l~~G~i~~-~ 234 (257)
T 1g6h_A 161 LVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYID-----HLYVMFNGQIIA-E 234 (257)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCS-----EEEEEETTEEEE-E
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC-----EEEEEECCEEEE-E
Confidence 999999999999999999999999999999999999876 4699999999999999995 999999999974 5
Q ss_pred CCHHH
Q 048654 704 GTFEE 708 (723)
Q Consensus 704 g~~~~ 708 (723)
|++++
T Consensus 235 g~~~~ 239 (257)
T 1g6h_A 235 GRGEE 239 (257)
T ss_dssp EESHH
T ss_pred eCHHH
Confidence 77777
No 31
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.1e-41 Score=368.89 Aligned_cols=209 Identities=29% Similarity=0.371 Sum_probs=173.0
Q ss_pred CCCeEEEEEEEEEc-CCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------ee
Q 048654 492 TPPLLQLIEVSFSY-PNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LR 561 (723)
Q Consensus 492 ~~~~l~~~~ls~~y-~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ 561 (723)
+.++|+++||+++| ++ ..+|+||||+|.+||+++|+||||||||||||+|+|+++|++|+|.+++. ..
T Consensus 11 ~~~~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ 88 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRN 88 (355)
T ss_dssp CCEEEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSS
T ss_pred CCceEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCc
Confidence 45689999999999 64 35899999999999999999999999999999999999999999998763 25
Q ss_pred EEEEcccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 562 IGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 562 ig~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
+||++|+. +..+++.++.... +...... .....+++.++|+.+||.+.. ++++.+|||||||||+|||||+.+|+
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~-l~~~~~~-~~~~~~~v~~~l~~~gL~~~~-~r~~~~LSGGq~QRvalArAL~~~P~ 165 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFG-LREKRVP-KDEMDARVRELLRFMRLESYA-NRFPHELSGGQQQRVALARALAPRPQ 165 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHH-HHHTTCC-HHHHHHHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEEEecCcccCCCCCHHHHHHHH-HHHcCCC-HHHHHHHHHHHHHHcCChhHh-cCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 99999974 3345555554322 2221110 001235688999999997655 46779999999999999999999999
Q ss_pred eEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 640 ILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||||||++||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++..
T Consensus 166 lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad-----ri~vl~~G~i~~-~g~~~~l~~ 235 (355)
T 1z47_A 166 VLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVAD-----RVLVLHEGNVEQ-FGTPEEVYE 235 (355)
T ss_dssp EEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHHh
Confidence 99999999999999999999988765 4699999999999999995 999999999974 588887654
No 32
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=8e-42 Score=357.65 Aligned_cols=216 Identities=25% Similarity=0.316 Sum_probs=168.5
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
.+|+++||++.|+++++|+||||+|++|+++||+||||||||||+++|+|+..| ..|+|.+.++++.......
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~~~~~~~----- 82 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNLNSWQPKA----- 82 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEETTTSCHHH-----
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECCcCCHHH-----
Confidence 479999999999999999999999999999999999999999999999998754 5677888777765433211
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
++..++++.+.... .....+.+++.... ..........++.++++.+|+.. ..++++.+|||
T Consensus 83 --------~~~~i~~v~q~~~~------~~~~tv~e~l~~~~---~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSg 144 (266)
T 4g1u_C 83 --------LARTRAVMRQYSEL------AFPFSVSEVIQMGR---APYGGSQDRQALQQVMAQTDCLA-LAQRDYRVLSG 144 (266)
T ss_dssp --------HHHHEEEECSCCCC------CSCCBHHHHHHGGG---TTSCSTTHHHHHHHHHHHTTCST-TTTSBGGGCCH
T ss_pred --------HhheEEEEecCCcc------CCCCCHHHHHHhhh---hhcCcHHHHHHHHHHHHHcCChh-HhcCCcccCCH
Confidence 12223333332111 01112233222110 11123345678899999999974 55799999999
Q ss_pred HHHHHHHHHHHHcc------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 324 GWRMRISLARALFV------QPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 324 GqrQRvaLArAL~~------~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
||||||+|||||+. +|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|
T Consensus 145 Gq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G 224 (266)
T 4g1u_C 145 GEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQG 224 (266)
T ss_dssp HHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECC
Confidence 99999999999999 99999999999999999999999988765 359999999999999999999999999
Q ss_pred EEEEecCChhhH
Q 048654 394 KLHFYRGNFDDF 405 (723)
Q Consensus 394 ~i~~~~g~~~~~ 405 (723)
+++. .|+.+++
T Consensus 225 ~i~~-~g~~~~~ 235 (266)
T 4g1u_C 225 KLVA-CGTPEEV 235 (266)
T ss_dssp EEEE-EECHHHH
T ss_pred EEEE-EcCHHHH
Confidence 9974 5777665
No 33
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.3e-41 Score=370.63 Aligned_cols=215 Identities=23% Similarity=0.332 Sum_probs=171.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
.|+++||+++|++..+|+||||+|++|++++|+||||||||||||+|+|+.. |.+|+|.+.++++.......
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~~~------ 74 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAE------ 74 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGG------
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCHHH------
Confidence 5999999999999999999999999999999999999999999999999875 46788888777764332110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
..++++.+.... .....+.+++..... .......+...++.++|+.+|+.. ..++++.+||||
T Consensus 75 ---------r~ig~VfQ~~~l------~p~ltV~eni~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~p~~LSGG 137 (381)
T 3rlf_A 75 ---------RGVGMVFQSYAL------YPHLSVAENMSFGLK-LAGAKKEVINQRVNQVAEVLQLAH-LLDRKPKALSGG 137 (381)
T ss_dssp ---------SCEEEECTTCCC------CTTSCHHHHHTHHHH-HTTCCHHHHHHHHHHHHHHTTCGG-GTTCCGGGSCHH
T ss_pred ---------CCEEEEecCCcC------CCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCch-hhcCChhHCCHH
Confidence 112233221111 112234444443322 223445566788999999999974 568999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|||+||||++++..+||||++|++|+++. .|
T Consensus 138 qrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~-~g 216 (381)
T 3rlf_A 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VG 216 (381)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEE-EE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-Ee
Confidence 999999999999999999999999999999999988888654 7899999999999999999999999999975 47
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+..++
T Consensus 217 ~~~~l 221 (381)
T 3rlf_A 217 KPLEL 221 (381)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76654
No 34
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=5.6e-42 Score=361.09 Aligned_cols=210 Identities=25% Similarity=0.348 Sum_probs=167.8
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------------
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------ 559 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------ 559 (723)
..++|+++||+++|++ ..+|+||||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 18 ~~~~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~ 95 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETV 95 (279)
T ss_dssp -CEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHH
T ss_pred CCceEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHH
Confidence 3458999999999975 35899999999999999999999999999999999999999999998762
Q ss_pred -eeEEEEccccccccCccccHHHHHHhhC-C--CCCC-C--cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHH
Q 048654 560 -LRIGRYSQHFVDLLTMEETPVSYLLRLH-P--DQEG-L--SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 560 -~~ig~~~q~~~~~~~~~~~~~~~~~~~~-~--~~~~-~--~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAr 632 (723)
..++|++|.....+....++.+.+.... . ...+ . ...+.+.++|+.+||.... ++++.+|||||||||+|||
T Consensus 96 ~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~LSgGqkqRv~lAr 174 (279)
T 2ihy_A 96 RQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKA-QQYIGYLSTGEKQRVMIAR 174 (279)
T ss_dssp HTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHHHHHH
T ss_pred cCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHH
Confidence 2489999974321111113222221110 0 0000 0 1234678899999997544 4678999999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceE--EEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGV--VLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFE 707 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tV--IivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~ 707 (723)
||+.+|+||||||||+|||+.++..+.++|+++ +.|| |+||||++++..+|| +|++|++|+|+. .|+++
T Consensus 175 aL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d-----~v~~l~~G~i~~-~g~~~ 248 (279)
T 2ihy_A 175 ALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFS-----KILLLKDGQSIQ-QGAVE 248 (279)
T ss_dssp HHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCC-----EEEEEETTEEEE-EEEHH
T ss_pred HHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCC-----EEEEEECCEEEE-ECCHH
Confidence 999999999999999999999999999999876 4689 999999999998885 999999999974 57887
Q ss_pred HHH
Q 048654 708 EYK 710 (723)
Q Consensus 708 ~~~ 710 (723)
++.
T Consensus 249 ~~~ 251 (279)
T 2ihy_A 249 DIL 251 (279)
T ss_dssp HHC
T ss_pred HHh
Confidence 764
No 35
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-41 Score=349.68 Aligned_cols=200 Identities=27% Similarity=0.400 Sum_probs=164.4
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~ 565 (723)
||+++||+++|++ +|+||||+|++ ++++|+||||||||||+++|+|+++|++|+|.+++. ..++|+
T Consensus 1 ml~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v 75 (240)
T 2onk_A 1 MFLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFV 75 (240)
T ss_dssp CCEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCC
T ss_pred CEEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEE
Confidence 4789999999963 49999999999 999999999999999999999999999999998763 248999
Q ss_pred ccccc--cccCccccHHHHHHhhCCCCCCC-cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEE
Q 048654 566 SQHFV--DLLTMEETPVSYLLRLHPDQEGL-SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642 (723)
Q Consensus 566 ~q~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLl 642 (723)
+|+.. ..+++.++ +. +.....+. ...+.+.++|+.+||.+.. ++++.+|||||||||+|||||+.+|+|||
T Consensus 76 ~q~~~l~~~ltv~en----l~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGqkqRv~lAral~~~p~lll 149 (240)
T 2onk_A 76 PQDYALFPHLSVYRN----IA-YGLRNVERVERDRRVREMAEKLGIAHLL-DRKPARLSGGERQRVALARALVIQPRLLL 149 (240)
T ss_dssp CSSCCCCTTSCHHHH----HH-TTCTTSCHHHHHHHHHHHHHTTTCTTTT-TCCGGGSCHHHHHHHHHHHHHTTCCSSBE
T ss_pred cCCCccCCCCcHHHH----HH-HHHHHcCCchHHHHHHHHHHHcCCHHHh-cCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99742 22233222 21 11111111 1235678899999997654 46779999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 643 LDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 643 LDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||+|||+.++..+.++|.++ +.|||+||||++++..+|| +|++|++|+++. .|+++++..
T Consensus 150 LDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d-----~i~~l~~G~i~~-~g~~~~~~~ 216 (240)
T 2onk_A 150 LDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD-----EVAVMLNGRIVE-KGKLKELFS 216 (240)
T ss_dssp EESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999876 4689999999999999995 999999999974 578877643
No 36
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.1e-41 Score=367.96 Aligned_cols=206 Identities=27% Similarity=0.342 Sum_probs=171.2
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~ 565 (723)
+|+++||+++|++ ..+|+||||+|.+|++++|+||||||||||||+|+|+++|++|+|.++++ ..+||+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLV 80 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEE
Confidence 5899999999975 35899999999999999999999999999999999999999999998763 259999
Q ss_pred cccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 566 SQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 566 ~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
+|+. +..+++.++.... +...... .....+++.++|+.+||.+.. ++++.+|||||||||+|||||+.+|+||||
T Consensus 81 ~Q~~~l~~~ltv~eni~~~-~~~~~~~-~~~~~~~v~~~l~~~~L~~~~-~r~~~~LSGGq~QRvalArAL~~~P~lLLL 157 (362)
T 2it1_A 81 FQNWALYPHMTVYKNIAFP-LELRKAP-REEIDKKVREVAKMLHIDKLL-NRYPWQLSGGQQQRVAIARALVKEPEVLLL 157 (362)
T ss_dssp CTTCCCCTTSCHHHHHHHH-HHHTTCC-HHHHHHHHHHHHHHTTCTTCT-TCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred ecCcccCCCCCHHHHHHHH-HHhcCCC-HHHHHHHHHHHHHHcCCchHh-hCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9974 3345555554322 2221110 001235688999999998655 467799999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 644 DEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||++||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++..
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad-----ri~vl~~G~i~~-~g~~~~~~~ 223 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMAD-----RIAVIREGEILQ-VGTPDEVYY 223 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHHHh
Confidence 9999999999999999998775 4699999999999999995 999999999974 588887654
No 37
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.3e-41 Score=350.93 Aligned_cols=219 Identities=24% Similarity=0.354 Sum_probs=168.8
Q ss_pred CccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 162 NVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 162 ~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
.+.+|+++||+++|+++++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.++++.. ...
T Consensus 12 ~~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~-~~~---- 84 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVE-EPH---- 84 (256)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTT-CHH----
T ss_pred cCCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCc-cHH----
Confidence 4668999999999999999999999999999999999999999999999999865 457788877765532 110
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSF 321 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~L 321 (723)
.++..++++.+.... .....+.+++.... .+..........++.++|+.+|+.. ..++++.+|
T Consensus 85 ---------~~~~~i~~v~q~~~l------~~~ltv~enl~~~~-~~~~~~~~~~~~~~~~~l~~~gL~~-~~~~~~~~L 147 (256)
T 1vpl_A 85 ---------EVRKLISYLPEEAGA------YRNMQGIEYLRFVA-GFYASSSSEIEEMVERATEIAGLGE-KIKDRVSTY 147 (256)
T ss_dssp ---------HHHTTEEEECTTCCC------CTTSBHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHCCGG-GGGSBGGGC
T ss_pred ---------HHhhcEEEEcCCCCC------CCCCcHHHHHHHHH-HHcCCChHHHHHHHHHHHHHCCCch-HhcCChhhC
Confidence 112233444332111 11123334433221 1222223334567889999999974 457899999
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 148 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~- 226 (256)
T 1vpl_A 148 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE- 226 (256)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE-
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEE-
Confidence 999999999999999999999999999999999999999998765 6799999999999999999999999999974
Q ss_pred cCChhhH
Q 048654 399 RGNFDDF 405 (723)
Q Consensus 399 ~g~~~~~ 405 (723)
.|+.+++
T Consensus 227 ~g~~~~~ 233 (256)
T 1vpl_A 227 TGTVEEL 233 (256)
T ss_dssp EEEHHHH
T ss_pred ecCHHHH
Confidence 4766554
No 38
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-41 Score=354.49 Aligned_cols=209 Identities=29% Similarity=0.373 Sum_probs=167.7
Q ss_pred eEEEEEEEEEcC-CCc--ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------eeEE
Q 048654 495 LLQLIEVSFSYP-NRE--DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------LRIG 563 (723)
Q Consensus 495 ~l~~~~ls~~y~-~~~--~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------~~ig 563 (723)
+|+++||+++|+ +.. ..+|+||||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 689999999997 221 35899999999999999999999999999999999999999999999873 2589
Q ss_pred EEccccccccCccccHHHHHHhhCCC-CCCCcHHHHHHHHHHhCCCC--CCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 564 RYSQHFVDLLTMEETPVSYLLRLHPD-QEGLSKQEAVRAKLGKFGLP--SHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 564 ~~~q~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~~~gl~--~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
|++|+....+. ..++.+.+...... .......+.+.++++.+||. ... ++++.+|||||||||+|||||+.+|+|
T Consensus 82 ~v~q~~~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~LSgGq~qRv~lAraL~~~p~l 159 (266)
T 2yz2_A 82 IAFQYPEDQFF-AERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFK-DRVPFFLSGGEKRRVAIASVIVHEPDI 159 (266)
T ss_dssp EECSSGGGGCC-CSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHT-TCCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEeccchhhcC-CCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccc-cCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99997421111 12322222111100 11111245688999999997 544 467799999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+++. .|+++++..
T Consensus 160 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d-----~v~~l~~G~i~~-~g~~~~~~~ 227 (266)
T 2yz2_A 160 LILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVD-----RVVVLEKGKKVF-DGTRMEFLE 227 (266)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCS-----EEEEEETTEEEE-EEEHHHHHH
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-eCCHHHHhc
Confidence 9999999999999999999999876 3689999999999998995 999999999974 577776643
No 39
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.1e-41 Score=355.07 Aligned_cols=219 Identities=16% Similarity=0.199 Sum_probs=166.7
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
++|+++||+++|+++++|+||||+|++|++++|+||||||||||+|+|+|+.. |..|+|.+.++++.......
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~----- 78 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAE----- 78 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHH-----
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHH-----
Confidence 46999999999999999999999999999999999999999999999999865 45788888777654322110
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHH-HHh-----------cCchHHHHHHHHHHHhCCCCc
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEK-LQI-----------LGSDAAEAQASKILAGLGFTK 311 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~-----------~~~~~~~~~~~~~L~~lgl~~ 311 (723)
..+..++++.+.... .....+.+++...... ... ........++.++|+.+|+.
T Consensus 79 -------~~~~~i~~v~q~~~l------~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~- 144 (257)
T 1g6h_A 79 -------LYHYGIVRTFQTPQP------LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS- 144 (257)
T ss_dssp -------HHHHTEEECCCCCGG------GGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-
T ss_pred -------HHhCCEEEEccCCcc------CCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-
Confidence 112223333221100 0111223332211000 000 12234457789999999996
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEE
Q 048654 312 EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 312 ~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii 388 (723)
...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|+
T Consensus 145 ~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~ 224 (257)
T 1g6h_A 145 HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLY 224 (257)
T ss_dssp GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEE
T ss_pred hhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 4568999999999999999999999999999999999999999999999998765 6899999999999999999999
Q ss_pred EEeCCEEEEecCChhh
Q 048654 389 HLHDQKLHFYRGNFDD 404 (723)
Q Consensus 389 ~L~~G~i~~~~g~~~~ 404 (723)
+|++|+++. .|+.++
T Consensus 225 ~l~~G~i~~-~g~~~~ 239 (257)
T 1g6h_A 225 VMFNGQIIA-EGRGEE 239 (257)
T ss_dssp EEETTEEEE-EEESHH
T ss_pred EEECCEEEE-EeCHHH
Confidence 999999974 466555
No 40
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.9e-41 Score=365.20 Aligned_cols=201 Identities=25% Similarity=0.373 Sum_probs=169.8
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~ 565 (723)
||+++||+++|++ . +|++|||+|++|++++|+||||||||||||+|+|+++|++|+|.++++ ..+||+
T Consensus 1 ml~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 77 (348)
T 3d31_A 1 MIEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFV 77 (348)
T ss_dssp CEEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEE
T ss_pred CEEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEE
Confidence 5899999999974 3 899999999999999999999999999999999999999999998874 248999
Q ss_pred cccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 566 SQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 566 ~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
+|+. +..+++.++.... +...... .. +++.++|+.++|.+... +++.+|||||||||+|||||+.+|+||||
T Consensus 78 ~Q~~~l~~~ltv~enl~~~-~~~~~~~---~~-~~v~~~l~~~~L~~~~~-~~~~~LSgGq~QRvalAraL~~~P~lLLL 151 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFG-MRMKKIK---DP-KRVLDTARDLKIEHLLD-RNPLTLSGGEQQRVALARALVTNPKILLL 151 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHH-HHHHCCC---CH-HHHHHHHHHTTCTTTTT-SCGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred ecCcccCCCCCHHHHHHHH-HHHcCCC---HH-HHHHHHHHHcCCchHhc-CChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9974 3445565554322 2211111 12 67889999999986554 66799999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 644 DEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||||++||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++.
T Consensus 152 DEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~ad-----ri~vl~~G~i~~-~g~~~~~~ 216 (348)
T 3d31_A 152 DEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD-----RIAVVMDGKLIQ-VGKPEEIF 216 (348)
T ss_dssp ESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS-----EEEEESSSCEEE-EECHHHHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999998775 4699999999999999995 999999999974 58887764
No 41
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.6e-41 Score=367.63 Aligned_cols=219 Identities=23% Similarity=0.281 Sum_probs=167.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|+++++|+||||+|++||+++|+||||||||||||+|+|+.. |.+|+|.+.++++.......
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~~~------ 75 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNTNL------ 75 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSCBC------
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECccccccc------
Confidence 5999999999999999999999999999999999999999999999999865 46788888887763211000
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
+ ..+..++++.+.... .....+.+++..... .......+..+++.++|+.+||. ...++++.+||||
T Consensus 76 --~---~~~r~ig~vfQ~~~l------~p~ltV~eni~~~l~-~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGG 142 (359)
T 3fvq_A 76 --P---VRERRLGYLVQEGVL------FPHLTVYRNIAYGLG-NGKGRTAQERQRIEAMLELTGIS-ELAGRYPHELSGG 142 (359)
T ss_dssp --C---GGGSCCEEECTTCCC------CTTSCHHHHHHTTST-TSSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGGSCHH
T ss_pred --c---hhhCCEEEEeCCCcC------CCCCCHHHHHHHHHH-HcCCChHHHHHHHHHHHHHcCCc-hHhcCChhhCCHH
Confidence 0 001122333221110 112233333322111 11123455678899999999997 4568999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh----hcCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLC----RWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~----~~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+.+|+||||||||++||+..+..+.+.|. +.+.|||+||||++++..+||||++|++|+|+. .|
T Consensus 143 q~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~-~g 221 (359)
T 3fvq_A 143 QQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQ-TA 221 (359)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEE-EE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEE-Ee
Confidence 9999999999999999999999999999999988876554 347899999999999999999999999999974 57
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+++++
T Consensus 222 ~~~el 226 (359)
T 3fvq_A 222 SPHEL 226 (359)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 77665
No 42
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=4.1e-41 Score=365.25 Aligned_cols=203 Identities=25% Similarity=0.349 Sum_probs=168.9
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~ 565 (723)
+|+++||+++|++ ..+|++|||+|++|++++|+||||||||||||+|+|+++|++|+|.+++. ..+||+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 80 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMV 80 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEE
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEE
Confidence 5899999999975 35899999999999999999999999999999999999999999998763 259999
Q ss_pred ccccc--cccCccccHHHHHHhhCCCCCCCcH---HHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 566 SQHFV--DLLTMEETPVSYLLRLHPDQEGLSK---QEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 566 ~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
+|+.. ..+++.++.. +.....+... .+++.++|+.+||.+.. ++++.+|||||||||+|||||+.+|+|
T Consensus 81 ~Q~~~l~~~ltv~eni~-----~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~r~~~~LSgGq~QRvalArAL~~~P~l 154 (359)
T 2yyz_A 81 FQNYALYPHMTVFENIA-----FPLRARRISKDEVEKRVVEIARKLLIDNLL-DRKPTQLSGGQQQRVALARALVKQPKV 154 (359)
T ss_dssp CSSCCCCTTSCHHHHHH-----GGGSSSCSHHHHTTHHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred ecCcccCCCCCHHHHHH-----HHHHhcCCCHHHHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 99742 3344444421 1111111111 24688999999997655 466799999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||||++||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++..
T Consensus 155 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~ad-----ri~vl~~G~i~~-~g~~~~l~~ 223 (359)
T 2yyz_A 155 LLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMAS-----RIAVFNQGKLVQ-YGTPDEVYD 223 (359)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC-----EEEEEECCEEEE-eCCHHHHHh
Confidence 9999999999999999999988775 4699999999999999995 999999999974 588887654
No 43
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3.9e-41 Score=367.59 Aligned_cols=206 Identities=24% Similarity=0.353 Sum_probs=170.4
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------------- 559 (723)
+|+++||+++|++ ..+|+||||+|.+|++++|+||||||||||||+|+|+++|++|+|.++++
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~ 80 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhH
Confidence 6899999999975 35899999999999999999999999999999999999999999987652
Q ss_pred eeEEEEcccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccC
Q 048654 560 LRIGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSK 637 (723)
Q Consensus 560 ~~ig~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~ 637 (723)
..+||++|+. +..+++.++.... +...... .....+++.++|+.+||.+.. ++++.+|||||||||+|||||+.+
T Consensus 81 r~ig~v~Q~~~l~~~ltv~eni~~~-~~~~~~~-~~~~~~~v~~~l~~~~L~~~~-~r~~~~LSGGq~QRvalArAL~~~ 157 (372)
T 1g29_1 81 RDIAMVFQSYALYPHMTVYDNIAFP-LKLRKVP-RQEIDQRVREVAELLGLTELL-NRKPRELSGGQRQRVALGRAIVRK 157 (372)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHH-HHHTTCC-HHHHHHHHHHHHHHHTCGGGT-TCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHH-HHHcCCC-HHHHHHHHHHHHHHCCCchHh-cCCcccCCHHHHHHHHHHHHHhcC
Confidence 2489999974 3345555553322 2221110 001235688999999997654 467799999999999999999999
Q ss_pred CCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 638 PHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 638 p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++..
T Consensus 158 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad-----ri~vl~~G~i~~-~g~~~~l~~ 229 (372)
T 1g29_1 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGD-----RIAVMNRGVLQQ-VGSPDEVYD 229 (372)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred CCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCC-----EEEEEeCCEEEE-eCCHHHHHh
Confidence 9999999999999999999999988765 4699999999999999995 999999999974 588887654
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.2e-40 Score=349.19 Aligned_cols=226 Identities=20% Similarity=0.246 Sum_probs=166.3
Q ss_pred CCccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 161 ANVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 161 ~~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
...++|+++||+++|+++++|+||||+|++|++++|+||||||||||||+|+|+....|..|+|.+.+.++........
T Consensus 16 ~~~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~- 94 (267)
T 2zu0_C 16 RGSHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR- 94 (267)
T ss_dssp ----CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHH-
T ss_pred CCCceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHH-
Confidence 3445799999999999999999999999999999999999999999999999974334667888887776543221110
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHH---h---cCchHHHHHHHHHHHhCCCCcccc
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQ---I---LGSDAAEAQASKILAGLGFTKEMQ 314 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~---~~~~~~~~~~~~~L~~lgl~~~~~ 314 (723)
.+..++++.+.... .....+.+.+......+. . ........++.++|+.+|+.....
T Consensus 95 -----------~~~~i~~v~Q~~~l------~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~ 157 (267)
T 2zu0_C 95 -----------AGEGIFMAFQYPVE------IPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLL 157 (267)
T ss_dssp -----------HHHTEEEECSSCCC------CTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTT
T ss_pred -----------hhCCEEEEccCccc------cccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHh
Confidence 01112233221111 011122233322221111 1 112334567899999999964445
Q ss_pred CCCCC-CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhh-CCEEEE
Q 048654 315 GRPTK-SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTV-CTEIIH 389 (723)
Q Consensus 315 ~~~~~-~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~i-ad~Ii~ 389 (723)
++++. +|||||||||+|||||+.+|+||||||||++||+.++.+|.++|+++ +.|||+||||++++..+ ||+|++
T Consensus 158 ~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~ 237 (267)
T 2zu0_C 158 TRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHV 237 (267)
T ss_dssp TSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEE
T ss_pred cCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEE
Confidence 78887 59999999999999999999999999999999999999999999876 57999999999999886 999999
Q ss_pred EeCCEEEEecCChhhH
Q 048654 390 LHDQKLHFYRGNFDDF 405 (723)
Q Consensus 390 L~~G~i~~~~g~~~~~ 405 (723)
|++|+++. .|+.+++
T Consensus 238 l~~G~i~~-~g~~~~~ 252 (267)
T 2zu0_C 238 LYQGRIVK-SGDFTLV 252 (267)
T ss_dssp EETTEEEE-EECTTHH
T ss_pred EECCEEEE-EcCHHHH
Confidence 99999974 4666543
No 45
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.7e-41 Score=345.72 Aligned_cols=217 Identities=18% Similarity=0.204 Sum_probs=165.8
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|+++++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.+.++.......
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~------ 77 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHV------ 77 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHH------
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCHHH------
Confidence 6999999999999999999999999999999999999999999999999865 46788888777654322110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCC-CCccccCCCCCCCCh
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLG-FTKEMQGRPTKSFSG 323 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lg-l~~~~~~~~~~~LSG 323 (723)
..+..++++.+.... .....+.+++.... ...........++.++++.++ +.. ..++++.+|||
T Consensus 78 ------~~~~~i~~v~q~~~l------~~~ltv~enl~~~~--~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~~~~LSg 142 (240)
T 1ji0_A 78 ------INRMGIALVPEGRRI------FPELTVYENLMMGA--YNRKDKEGIKRDLEWIFSLFPRLKE-RLKQLGGTLSG 142 (240)
T ss_dssp ------HHHTTEEEECSSCCC------CTTSBHHHHHHGGG--TTCCCSSHHHHHHHHHHHHCHHHHT-TTTSBSSSSCH
T ss_pred ------HHhCCEEEEecCCcc------CCCCcHHHHHHHhh--hcCCCHHHHHHHHHHHHHHcccHhh-HhcCChhhCCH
Confidence 011123333332111 11112333332110 001123345567888999994 853 45789999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++. .|
T Consensus 143 Gq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~-~g 221 (240)
T 1ji0_A 143 GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL-EG 221 (240)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EE
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-Ec
Confidence 9999999999999999999999999999999999999998765 5799999999999999999999999999974 46
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+.+++
T Consensus 222 ~~~~~ 226 (240)
T 1ji0_A 222 KASEL 226 (240)
T ss_dssp EHHHH
T ss_pred CHHHH
Confidence 66555
No 46
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.3e-41 Score=367.15 Aligned_cols=203 Identities=28% Similarity=0.391 Sum_probs=168.5
Q ss_pred eEEEEEEEEEcCCCccc--ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 495 LLQLIEVSFSYPNREDF--KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~--~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
+|+++||+++|++ .. +|+||||+|++|++++|+||||||||||||+|+|+++|++|+|.++++
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 6899999999974 35 899999999999999999999999999999999999999999987652
Q ss_pred -eeEEEEccccc--cccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHH
Q 048654 560 -LRIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 560 -~~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAra 633 (723)
..+||++|+.. ..+++.++.. +.+. ..+.. ..+++.++|+.+||.+.. ++++.+|||||||||+||||
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~-~~~~----~~~~~~~~~~~~v~~~l~~~~L~~~~-~~~~~~LSGGq~QRvalAra 154 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIA-FPLT----NMKMSKEEIRKRVEEVAKILDIHHVL-NHFPRELSGAQQQRVALARA 154 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHH-GGGT----TSSCCHHHHHHHHHHHHHHTTCGGGT-TSCGGGSCHHHHHHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHH-HHHH----HcCCCHHHHHHHHHHHHHHcCCchHh-cCChhhCCHHHHHHHHHHHH
Confidence 24899999742 3344444421 1111 11111 235688999999997654 46779999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++
T Consensus 155 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~ad-----ri~vl~~G~i~~-~g~~~~l 228 (353)
T 1oxx_K 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIAD-----RVGVLVKGKLVQ-VGKPEDL 228 (353)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCS-----EEEEEETTEEEE-EECHHHH
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-EcCHHHH
Confidence 99999999999999999999999999998765 4699999999999999995 999999999974 5888876
Q ss_pred HH
Q 048654 710 KE 711 (723)
Q Consensus 710 ~~ 711 (723)
..
T Consensus 229 ~~ 230 (353)
T 1oxx_K 229 YD 230 (353)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 47
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=8e-41 Score=364.58 Aligned_cols=203 Identities=24% Similarity=0.331 Sum_probs=167.2
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------eeEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK---------LRIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~---------~~ig~~ 565 (723)
+|+++||+++|++ ..+|+||||+|.+|++++|+||||||||||||+|+|+++|++|+|.++++ ..+||+
T Consensus 11 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 88 (372)
T 1v43_A 11 EVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMV 88 (372)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEE
T ss_pred eEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEE
Confidence 6999999999975 35899999999999999999999999999999999999999999998763 259999
Q ss_pred ccccc--cccCccccHHHHHHhhCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCe
Q 048654 566 SQHFV--DLLTMEETPVSYLLRLHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHI 640 (723)
Q Consensus 566 ~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~l 640 (723)
+|+.. ..+++.++. . +.....+.. ..+++.++|+.+||.+.. ++++.+|||||||||+|||||+.+|+|
T Consensus 89 ~Q~~~l~~~ltv~eni----~-~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-~r~~~~LSGGq~QRvalArAL~~~P~l 162 (372)
T 1v43_A 89 FQSYAVWPHMTVYENI----A-FPLKIKKFPKDEIDKRVRWAAELLQIEELL-NRYPAQLSGGQRQRVAVARAIVVEPDV 162 (372)
T ss_dssp EC------CCCHHHHH----H-TTCC--CCCHHHHHHHHHHHHHHTTCGGGT-TSCTTTCCSSCHHHHHHHHHHTTCCSE
T ss_pred ecCcccCCCCCHHHHH----H-HHHHhcCCCHHHHHHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 99742 334444432 1 111111111 234688999999997655 467799999999999999999999999
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 641 LLLDEPTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|||||||++||+.++..+.+.|+++ +.|||+||||++++..+|| +|++|++|+|+. .|+++++..
T Consensus 163 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad-----ri~vl~~G~i~~-~g~~~~l~~ 231 (372)
T 1v43_A 163 LLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGD-----RIAVMNRGQLLQ-IGSPTEVYL 231 (372)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-eCCHHHHHh
Confidence 9999999999999999999988775 4699999999999999995 999999999974 588887654
No 48
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.1e-40 Score=362.13 Aligned_cols=215 Identities=25% Similarity=0.310 Sum_probs=169.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|+++++|+||||+|++|++++|+||||||||||||+|+|+.. |..|+|.+.++++......
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~------- 73 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPK------- 73 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGG-------
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHh-------
Confidence 5899999999998899999999999999999999999999999999999865 4678888877766432211
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
...++++.+.... .....+.+++..... .......+..+++.++|+.+|+.+ ..++++.+||||
T Consensus 74 --------~r~ig~v~Q~~~l------~~~ltv~eni~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSGG 137 (362)
T 2it1_A 74 --------DRNVGLVFQNWAL------YPHMTVYKNIAFPLE-LRKAPREEIDKKVREVAKMLHIDK-LLNRYPWQLSGG 137 (362)
T ss_dssp --------GTTEEEECTTCCC------CTTSCHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHTTCTT-CTTCCGGGSCHH
T ss_pred --------HCcEEEEecCccc------CCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCch-HhhCChhhCCHH
Confidence 0122333221111 112234444433221 122333455678999999999974 568999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|||+||||++++..+||+|++|++|+++. .|
T Consensus 138 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~-~g 216 (362)
T 2it1_A 138 QQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQ-VG 216 (362)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-Ec
Confidence 999999999999999999999999999999999998888754 6899999999999999999999999999974 47
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+++++
T Consensus 217 ~~~~~ 221 (362)
T 2it1_A 217 TPDEV 221 (362)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76655
No 49
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.2e-40 Score=346.40 Aligned_cols=204 Identities=23% Similarity=0.361 Sum_probs=165.0
Q ss_pred CeEEEEEEEEEcC-CCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEcccccc-
Q 048654 494 PLLQLIEVSFSYP-NREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVD- 571 (723)
Q Consensus 494 ~~l~~~~ls~~y~-~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~- 571 (723)
++|+++||+++|+ + ..+|++|||+|.+|++++|+||||||||||+++|+|+++|++|+|.+. ..++|++|....
T Consensus 3 ~~l~i~~l~~~y~~~--~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~--~~i~~v~q~~~~~ 78 (253)
T 2nq2_C 3 KALSVENLGFYYQAE--NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY--QSIGFVPQFFSSP 78 (253)
T ss_dssp EEEEEEEEEEEETTT--TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC--SCEEEECSCCCCS
T ss_pred ceEEEeeEEEEeCCC--CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe--ccEEEEcCCCccC
Confidence 3799999999997 4 358999999999999999999999999999999999999999999843 359999997422
Q ss_pred -ccCccccHHHHHHhhCCCC---CCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCC
Q 048654 572 -LLTMEETPVSYLLRLHPDQ---EGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPT 647 (723)
Q Consensus 572 -~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT 647 (723)
.+++.++... ........ ......+.+.++++.+||.... ++++.+|||||||||+|||||+.+|+||||||||
T Consensus 79 ~~~tv~enl~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPt 156 (253)
T 2nq2_C 79 FAYSVLDIVLM-GRSTHINTFAKPKSHDYQVAMQALDYLNLTHLA-KREFTSLSGGQRQLILIARAIASECKLILLDEPT 156 (253)
T ss_dssp SCCBHHHHHHG-GGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGT-TSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSS
T ss_pred CCCCHHHHHHH-hhhhhcccccCCCHHHHHHHHHHHHHcCChHHh-cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 2233333211 01000000 0111235678899999997554 4677999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 648 NHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 648 ~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
+|||+.++..+.+.|.++ +.|||+||||++++..+|| +|++|++|+ + +.|+++++.
T Consensus 157 s~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d-----~v~~l~~G~-~-~~g~~~~~~ 216 (253)
T 2nq2_C 157 SALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIAN-----KTLLLNKQN-F-KFGETRNIL 216 (253)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCS-----EEEEEETTE-E-EEEEHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC-----EEEEEeCCe-E-ecCCHHHHh
Confidence 999999999999999876 4689999999999999995 999999999 6 457777763
No 50
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.2e-40 Score=345.77 Aligned_cols=220 Identities=21% Similarity=0.248 Sum_probs=161.1
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|+++++|+||||+|++|++++|+||||||||||+++|+|+....|..|+|.+.+.++........
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~----- 77 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER----- 77 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHH-----
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHH-----
Confidence 589999999999999999999999999999999999999999999999973224567888887776543221110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhc--CchHHHHHHHHHHHhCCCCccccCCCCCC-C
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQIL--GSDAAEAQASKILAGLGFTKEMQGRPTKS-F 321 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~L~~lgl~~~~~~~~~~~-L 321 (723)
.+..++++.+.... .....+.+.+.......... .......++.++|+.+|+.....++++.+ |
T Consensus 78 -------~~~~i~~v~q~~~~------~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~L 144 (250)
T 2d2e_A 78 -------ARKGLFLAFQYPVE------VPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGF 144 (250)
T ss_dssp -------HHTTBCCCCCCCC-------CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC-
T ss_pred -------HhCcEEEeccCCcc------ccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence 01112222221110 11112333332221111111 22334567889999999953456788999 9
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhh-CCEEEEEeCCEEEE
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTV-CTEIIHLHDQKLHF 397 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~i-ad~Ii~L~~G~i~~ 397 (723)
||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+ ||+|++|++|+++.
T Consensus 145 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~ 224 (250)
T 2d2e_A 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVA 224 (250)
T ss_dssp ---HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999875 57999999999999988 59999999999974
Q ss_pred ecCChh
Q 048654 398 YRGNFD 403 (723)
Q Consensus 398 ~~g~~~ 403 (723)
.|+.+
T Consensus 225 -~g~~~ 229 (250)
T 2d2e_A 225 -TGGPE 229 (250)
T ss_dssp -EESHH
T ss_pred -EeCHH
Confidence 46654
No 51
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.1e-40 Score=361.04 Aligned_cols=218 Identities=23% Similarity=0.325 Sum_probs=170.2
Q ss_pred CccceEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 162 NVKDITIDNFSVAA-RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 162 ~~~~I~l~nls~~y-~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
...+|+++||+++| +++++|+||||+|++|++++|+||||||||||||+|+|+.. |.+|+|.+.++++......
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~--- 85 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQ--- 85 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGG---
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCChh---
Confidence 44579999999999 88889999999999999999999999999999999999865 4678888877765432110
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
+..++++.+.... .....+.+++..... .......+...++.++|+.+||. ...++++.+
T Consensus 86 ------------~r~ig~v~Q~~~l------~~~ltv~eni~~~l~-~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~ 145 (355)
T 1z47_A 86 ------------KRNVGLVFQNYAL------FQHMTVYDNVSFGLR-EKRVPKDEMDARVRELLRFMRLE-SYANRFPHE 145 (355)
T ss_dssp ------------GSSEEEECGGGCC------CTTSCHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHTTCG-GGTTSCGGG
T ss_pred ------------hCcEEEEecCccc------CCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCh-hHhcCCccc
Confidence 0112222221110 112233444433221 12233345567899999999996 456899999
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEE
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~ 396 (723)
|||||||||+|||||+.+|+||||||||++||+..+..+.++|+++ +.|||+||||++++..+||+|++|++|+++
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~ 225 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVE 225 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999998888654 689999999999999999999999999997
Q ss_pred EecCChhhH
Q 048654 397 FYRGNFDDF 405 (723)
Q Consensus 397 ~~~g~~~~~ 405 (723)
. .|+++++
T Consensus 226 ~-~g~~~~l 233 (355)
T 1z47_A 226 Q-FGTPEEV 233 (355)
T ss_dssp E-EECHHHH
T ss_pred E-EcCHHHH
Confidence 4 4776655
No 52
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=2.1e-40 Score=361.77 Aligned_cols=215 Identities=21% Similarity=0.318 Sum_probs=168.8
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecC------CChHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVG------DDRSA 238 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~------~~~~~ 238 (723)
+|+++||+++|+++++|+||||+|++|++++|+||||||||||||+|+|+.. |..|+|.+.++.+.. ....
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~~~~~~- 79 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPK- 79 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGG-
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccccccCCHh-
Confidence 5899999999999999999999999999999999999999999999999865 467888887766532 1110
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCC
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPT 318 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 318 (723)
...++++.+.... .....+.+++..... ...........++.++|+.+||.+ ..++++
T Consensus 80 --------------~r~ig~v~Q~~~l------~~~ltv~eni~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~ 137 (372)
T 1g29_1 80 --------------DRDIAMVFQSYAL------YPHMTVYDNIAFPLK-LRKVPRQEIDQRVREVAELLGLTE-LLNRKP 137 (372)
T ss_dssp --------------GSSEEEECSCCCC------CTTSCHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHTCGG-GTTCCG
T ss_pred --------------HCCEEEEeCCCcc------CCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHCCCch-HhcCCc
Confidence 0122333221111 112234444433221 122333455678999999999964 568999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
.+|||||||||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|||+||||++++..+||+|++|++|+
T Consensus 138 ~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~ 217 (372)
T 1g29_1 138 RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGV 217 (372)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999998888654 6899999999999999999999999999
Q ss_pred EEEecCChhhH
Q 048654 395 LHFYRGNFDDF 405 (723)
Q Consensus 395 i~~~~g~~~~~ 405 (723)
++. .|++.++
T Consensus 218 i~~-~g~~~~l 227 (372)
T 1g29_1 218 LQQ-VGSPDEV 227 (372)
T ss_dssp EEE-EECHHHH
T ss_pred EEE-eCCHHHH
Confidence 974 4777655
No 53
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=9.1e-41 Score=362.51 Aligned_cols=215 Identities=25% Similarity=0.297 Sum_probs=166.2
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|+++++|+||||+|++|++++|+||||||||||||+|+|+.. |..|+|.+.++++......
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~------- 73 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPK------- 73 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGG-------
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCChh-------
Confidence 5899999999999999999999999999999999999999999999999865 4678888877766432211
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
...++++.+.... .....+.+++..... .......+..+++.++|+.+|+.+ ..++++.+||||
T Consensus 74 --------~r~ig~v~Q~~~l------~~~ltv~eni~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~-~~~r~~~~LSgG 137 (359)
T 2yyz_A 74 --------YREVGMVFQNYAL------YPHMTVFENIAFPLR-ARRISKDEVEKRVVEIARKLLIDN-LLDRKPTQLSGG 137 (359)
T ss_dssp --------GTTEEEECSSCCC------CTTSCHHHHHHGGGS-SSCSHHHHTTHHHHHHHHHTTCGG-GTTSCGGGSCHH
T ss_pred --------hCcEEEEecCccc------CCCCCHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHcCCch-HhcCChhhCCHH
Confidence 0122333221111 112233333322110 000111233567899999999964 568999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|||+||||++++..+||+|++|++|+++. .|
T Consensus 138 q~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~-~g 216 (359)
T 2yyz_A 138 QQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQ-YG 216 (359)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EE
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEE-eC
Confidence 999999999999999999999999999999999998888654 6899999999999999999999999999974 47
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+++++
T Consensus 217 ~~~~l 221 (359)
T 2yyz_A 217 TPDEV 221 (359)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76654
No 54
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.3e-40 Score=348.83 Aligned_cols=210 Identities=25% Similarity=0.367 Sum_probs=164.4
Q ss_pred CCCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcC--CCCCcceEEECCce---------
Q 048654 492 TPPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGD--LSPTEGEVRRSQKL--------- 560 (723)
Q Consensus 492 ~~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl--~~p~~G~I~~~~~~--------- 560 (723)
..++|+++||+++|++ ..+|+||||+|.+|++++|+|||||||||||++|+|+ ++|++|+|.+++..
T Consensus 17 ~~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~ 94 (267)
T 2zu0_C 17 GSHMLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94 (267)
T ss_dssp ---CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHH
T ss_pred CCceEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 3568999999999975 3589999999999999999999999999999999999 46899999987631
Q ss_pred ---eEEEEccccc--cccCccccHHHHH--Hh-hCCCCCCCc---HHHHHHHHHHhCCCCCCCCcCCCC-CCCHHHHHHH
Q 048654 561 ---RIGRYSQHFV--DLLTMEETPVSYL--LR-LHPDQEGLS---KQEAVRAKLGKFGLPSHNHLTPIA-KLSGGQKARV 628 (723)
Q Consensus 561 ---~ig~~~q~~~--~~~~~~~~~~~~~--~~-~~~~~~~~~---~~~~~~~~L~~~gl~~~~~~~~i~-~LSGGqkqRv 628 (723)
.++|++|... ..+++.++..... .. .+.. .... ..+.+.++|+.+||.....++++. +|||||||||
T Consensus 95 ~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv 173 (267)
T 2zu0_C 95 AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQ-ETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN 173 (267)
T ss_dssp HHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGC-CCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHH
T ss_pred hhCCEEEEccCccccccccHHHHHHHHHHhhhhhhcc-ccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHH
Confidence 3899999742 2233333321111 11 0110 0111 134578899999996433446666 5999999999
Q ss_pred HHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHh-cCcCCCcEEEEEECCeEEecCC
Q 048654 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRV-CDDEERSEIWVVENGTVSRFPG 704 (723)
Q Consensus 629 ~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~-~d~~~~drv~vl~~G~i~~~~g 704 (723)
+|||||+.+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+ | |+|++|++|+++. .|
T Consensus 174 ~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~-----d~v~~l~~G~i~~-~g 247 (267)
T 2zu0_C 174 DILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKP-----DYVHVLYQGRIVK-SG 247 (267)
T ss_dssp HHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCC-----SEEEEEETTEEEE-EE
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcC-----CEEEEEECCEEEE-Ec
Confidence 99999999999999999999999999999999999873 5899999999999876 7 4999999999974 57
Q ss_pred CHHHHH
Q 048654 705 TFEEYK 710 (723)
Q Consensus 705 ~~~~~~ 710 (723)
+++++.
T Consensus 248 ~~~~~~ 253 (267)
T 2zu0_C 248 DFTLVK 253 (267)
T ss_dssp CTTHHH
T ss_pred CHHHHh
Confidence 777653
No 55
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1e-40 Score=348.49 Aligned_cols=201 Identities=24% Similarity=0.390 Sum_probs=167.3
Q ss_pred eEEEEEEEEEcCCC--cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------eeEE-
Q 048654 495 LLQLIEVSFSYPNR--EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------LRIG- 563 (723)
Q Consensus 495 ~l~~~~ls~~y~~~--~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------~~ig- 563 (723)
||+++||+++|++. ...+|++|||+|+ |++++|+|||||||||||++|+|++ |++|+|.+++. ..++
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 58999999999741 1358999999999 9999999999999999999999999 99999998773 2589
Q ss_pred EEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCC-CCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEE
Q 048654 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLP-SHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642 (723)
Q Consensus 564 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~-~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLl 642 (723)
|++|.....+++.++.... ...+ . ...+.+.++++.+||. ... .+++.+|||||||||+|||||+.+|+|||
T Consensus 79 ~v~Q~~~l~~tv~enl~~~-~~~~-~----~~~~~~~~~l~~~gl~~~~~-~~~~~~LSgGqkqRv~lAraL~~~p~lll 151 (263)
T 2pjz_A 79 NLPEAYEIGVTVNDIVYLY-EELK-G----LDRDLFLEMLKALKLGEEIL-RRKLYKLSAGQSVLVRTSLALASQPEIVG 151 (263)
T ss_dssp CCGGGSCTTSBHHHHHHHH-HHHT-C----CCHHHHHHHHHHTTCCGGGG-GSBGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred EeCCCCccCCcHHHHHHHh-hhhc-c----hHHHHHHHHHHHcCCChhHh-cCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999753233343332211 1111 1 1245688999999997 544 46789999999999999999999999999
Q ss_pred eccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCc-EEEEEECCeEEecCCCHHHHH
Q 048654 643 LDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERS-EIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 643 LDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~d-rv~vl~~G~i~~~~g~~~~~~ 710 (723)
|||||+|||+.++..+.+.|+++..|||+||||++++..+| | ++++|++|+++. .|+++++.
T Consensus 152 LDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~-----d~~i~~l~~G~i~~-~g~~~~l~ 214 (263)
T 2pjz_A 152 LDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYK-----EYKAYFLVGNRLQG-PISVSELL 214 (263)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCT-----TSEEEEEETTEEEE-EEEHHHHH
T ss_pred EECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhc-----CceEEEEECCEEEE-ecCHHHHH
Confidence 99999999999999999999998669999999999998888 7 999999999974 57887764
No 56
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.4e-40 Score=342.92 Aligned_cols=203 Identities=25% Similarity=0.375 Sum_probs=160.3
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIG 563 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig 563 (723)
-|+++||+++|++....+|++|||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 47899999999321245899999999999999999999999999999999999999999998763 2489
Q ss_pred EEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCC----------CcCCCCCCCHHHHHHHHHHHH
Q 048654 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHN----------HLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 564 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~----------~~~~i~~LSGGqkqRv~lAra 633 (723)
|++|...- +. .++.+.+. +... .. ..+.+..+++.+++.... ..+++.+|||||||||+||||
T Consensus 87 ~v~Q~~~l-~~--~tv~enl~-~~~~--~~-~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAra 159 (247)
T 2ff7_A 87 VVLQDNVL-LN--RSIIDNIS-LANP--GM-SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARA 159 (247)
T ss_dssp EECSSCCC-TT--SBHHHHHT-TTCT--TC-CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHH
T ss_pred EEeCCCcc-cc--ccHHHHHh-ccCC--CC-CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHH
Confidence 99997531 21 24444332 2111 11 234455666666653211 124568999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|+.+|+||||||||++||+.+...+.++|+++ +.|||+||||++++. .| |+|++|++|+++. .|+++++..
T Consensus 160 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~-----d~v~~l~~G~i~~-~g~~~~l~~ 232 (247)
T 2ff7_A 160 LVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NA-----DRIIVMEKGKIVE-QGKHKELLS 232 (247)
T ss_dssp HTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TS-----SEEEEEETTEEEE-EECHHHHHT
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hC-----CEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999999887 469999999999885 47 4999999999974 578777643
No 57
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.1e-40 Score=361.22 Aligned_cols=217 Identities=23% Similarity=0.307 Sum_probs=166.1
Q ss_pred ccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 163 ~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
|.+|+++||+++|+++++|+||||+|++|++++|+||||||||||||+|+|+.. |..|+|.+.++.+.......
T Consensus 9 M~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~---- 82 (372)
T 1v43_A 9 MVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKD---- 82 (372)
T ss_dssp CCCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGG----
T ss_pred eeeEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCChhh----
Confidence 346999999999999999999999999999999999999999999999999865 46788888777664322110
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
..++++.+.... .....+.+++.... ............++.++|+.+||. ...++++.+||
T Consensus 83 -----------r~ig~v~Q~~~l------~~~ltv~eni~~~~-~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LS 143 (372)
T 1v43_A 83 -----------RNISMVFQSYAV------WPHMTVYENIAFPL-KIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLS 143 (372)
T ss_dssp -----------GTEEEEEC------------CCCHHHHHHTTC-C--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCC
T ss_pred -----------CcEEEEecCccc------CCCCCHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCC
Confidence 111222111000 00112223222110 011122344567899999999997 45689999999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEe
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFY 398 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~ 398 (723)
|||||||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|||+||||++++..+||+|++|++|+++.
T Consensus 144 GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~- 222 (372)
T 1v43_A 144 GGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ- 222 (372)
T ss_dssp SSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-
Confidence 99999999999999999999999999999999999998888754 6899999999999999999999999999974
Q ss_pred cCChhhH
Q 048654 399 RGNFDDF 405 (723)
Q Consensus 399 ~g~~~~~ 405 (723)
.|+++++
T Consensus 223 ~g~~~~l 229 (372)
T 1v43_A 223 IGSPTEV 229 (372)
T ss_dssp EECHHHH
T ss_pred eCCHHHH
Confidence 4776655
No 58
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=9.8e-41 Score=346.56 Aligned_cols=205 Identities=24% Similarity=0.311 Sum_probs=159.2
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcC--CCCCcceEEECCce------------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGD--LSPTEGEVRRSQKL------------ 560 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl--~~p~~G~I~~~~~~------------ 560 (723)
+|+++||+++|++ ..+|+||||+|.+|++++|+||||||||||+++|+|+ ++|++|+|.+++..
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 7999999999975 3589999999999999999999999999999999999 78999999987631
Q ss_pred eEEEEccccc--cccCccccHHHHHHhhCCCCCCC-cHHHHHHHHHHhCCCCCCCCcCCCCC-CCHHHHHHHHHHHHHcc
Q 048654 561 RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGL-SKQEAVRAKLGKFGLPSHNHLTPIAK-LSGGQKARVVFTSISMS 636 (723)
Q Consensus 561 ~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~gl~~~~~~~~i~~-LSGGqkqRv~lAral~~ 636 (723)
.++|++|... ..+++.++............... ...+.+.++|+.+||.....++++.+ |||||||||+|||||+.
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence 2678888642 22344343221111111100000 12345788999999953334567788 99999999999999999
Q ss_pred CCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHh-cCcCCCcEEEEEECCeEEecCCCHH
Q 048654 637 KPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRV-CDDEERSEIWVVENGTVSRFPGTFE 707 (723)
Q Consensus 637 ~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~-~d~~~~drv~vl~~G~i~~~~g~~~ 707 (723)
+|+||||||||+|||+.++..+.++|+++. .|||+||||++++..+ || +|++|++|+++. .|+++
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d-----~v~~l~~G~i~~-~g~~~ 229 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPD-----KVHVMMDGRVVA-TGGPE 229 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCS-----EEEEEETTEEEE-EESHH
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCC-----EEEEEECCEEEE-EeCHH
Confidence 999999999999999999999999998873 5899999999999887 44 999999999974 57776
No 59
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=5.2e-40 Score=344.92 Aligned_cols=207 Identities=26% Similarity=0.361 Sum_probs=163.6
Q ss_pred CCeEEEEEEEEEcCCC-cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------e
Q 048654 493 PPLLQLIEVSFSYPNR-EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------L 560 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~-~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~ 560 (723)
..+|+++||+++|++. ...+|++|||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. .
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 3579999999999751 235899999999999999999999999999999999999999999998773 2
Q ss_pred eEEEEccccccccCccccHHHHHHhhCCCCCCC-cH------HHHHHHHHHhC--CCCCCCCcCCCCCCCHHHHHHHHHH
Q 048654 561 RIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGL-SK------QEAVRAKLGKF--GLPSHNHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 561 ~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~L~~~--gl~~~~~~~~i~~LSGGqkqRv~lA 631 (723)
.++|++|... .+. .++.+.+...... ... .. ...+.+++..+ |+.... .+++.+|||||||||+||
T Consensus 94 ~i~~v~Q~~~-l~~--~tv~enl~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~-~~~~~~LSgGq~QRv~lA 168 (271)
T 2ixe_A 94 QVAAVGQEPL-LFG--RSFRENIAYGLTR-TPTMEEITAVAMESGAHDFISGFPQGYDTEV-GETGNQLSGGQRQAVALA 168 (271)
T ss_dssp HEEEECSSCC-CCS--SBHHHHHHTTCSS-CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBC-CGGGTTSCHHHHHHHHHH
T ss_pred cEEEEecCCc-ccc--ccHHHHHhhhccc-CChHHHHHHHHHHHhHHHHHHhhhcchhhhh-cCCcCCCCHHHHHHHHHH
Confidence 4899999752 121 2433333221111 111 01 01234567777 676544 456799999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC----ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT----GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFE 707 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~----~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~ 707 (723)
|||+.+|+||||||||++||+.++..|.++|.++. .|||+||||++++. .| |+|++|++|+|+. .|+++
T Consensus 169 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-~~-----d~v~~l~~G~i~~-~g~~~ 241 (271)
T 2ixe_A 169 RALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE-RA-----HHILFLKEGSVCE-QGTHL 241 (271)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-TC-----SEEEEEETTEEEE-EECHH
T ss_pred HHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-hC-----CEEEEEECCEEEE-ECCHH
Confidence 99999999999999999999999999999999873 58999999999986 47 4999999999974 58887
Q ss_pred HHHH
Q 048654 708 EYKE 711 (723)
Q Consensus 708 ~~~~ 711 (723)
++..
T Consensus 242 ~l~~ 245 (271)
T 2ixe_A 242 QLME 245 (271)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 60
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=5.2e-40 Score=355.40 Aligned_cols=211 Identities=25% Similarity=0.349 Sum_probs=165.9
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++|+++ +|+||||+|++|++++|+||||||||||||+|+|+.. |..|+|.+.++.+.....
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~-------- 69 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSP-------- 69 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCH--------
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCch--------
Confidence 38899999999988 9999999999999999999999999999999999865 467888887776543111
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
.+..++++.+.... .....+.+++..... ....... .++.++|+.+|+.. ..++++.+||||
T Consensus 70 -------~~r~ig~v~Q~~~l------~~~ltv~enl~~~~~-~~~~~~~---~~v~~~l~~~~L~~-~~~~~~~~LSgG 131 (348)
T 3d31_A 70 -------EKHDIAFVYQNYSL------FPHMNVKKNLEFGMR-MKKIKDP---KRVLDTARDLKIEH-LLDRNPLTLSGG 131 (348)
T ss_dssp -------HHHTCEEECTTCCC------CTTSCHHHHHHHHHH-HHCCCCH---HHHHHHHHHTTCTT-TTTSCGGGSCHH
T ss_pred -------hhCcEEEEecCccc------CCCCCHHHHHHHHHH-HcCCCHH---HHHHHHHHHcCCch-HhcCChhhCCHH
Confidence 11233443322111 112234444433221 1112222 77899999999974 568999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|||+||||++++..+||+|++|++|+++. .|
T Consensus 132 q~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~-~g 210 (348)
T 3d31_A 132 EQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ-VG 210 (348)
T ss_dssp HHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE-EE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EC
Confidence 999999999999999999999999999999999998888754 6899999999999999999999999999974 47
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+++++
T Consensus 211 ~~~~~ 215 (348)
T 3d31_A 211 KPEEI 215 (348)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76654
No 61
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.7e-40 Score=349.79 Aligned_cols=223 Identities=25% Similarity=0.279 Sum_probs=164.2
Q ss_pred CccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeec--CCChHHH
Q 048654 162 NVKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVV--GDDRSAI 239 (723)
Q Consensus 162 ~~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~--~~~~~~~ 239 (723)
..++|+++||+++|+++++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.+.++. ......
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~- 94 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMPGKVGYSAET- 94 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCCC---CCHHH-
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEcccccCCHHH-
Confidence 3346999999999999999999999999999999999999999999999999865 45778887776543 111111
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHH---HHHhcCchHHHHHHHHHHHhCCCCccccCC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYE---KLQILGSDAAEAQASKILAGLGFTKEMQGR 316 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~ 316 (723)
++..++++.+...... .....+.+++..... .+..........++.++|+.+|+. ...++
T Consensus 95 ------------~~~~i~~v~Q~~~~~~----~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~ 157 (279)
T 2ihy_A 95 ------------VRQHIGFVSHSLLEKF----QEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-AKAQQ 157 (279)
T ss_dssp ------------HHTTEEEECHHHHTTS----CTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-GGTTS
T ss_pred ------------HcCcEEEEEcCccccc----CCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-hHhcC
Confidence 1111222211100000 000122222211100 000111233456788999999996 45589
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEE--EEEeCCHHHHHhhCCEEEEEe
Q 048654 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTL--VVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 317 ~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TV--IivsHdl~~l~~iad~Ii~L~ 391 (723)
++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|| |+||||++++..+||+|++|+
T Consensus 158 ~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~ 237 (279)
T 2ihy_A 158 YIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLK 237 (279)
T ss_dssp BGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEE
T ss_pred ChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999998765 6799 999999999999999999999
Q ss_pred CCEEEEecCChhhH
Q 048654 392 DQKLHFYRGNFDDF 405 (723)
Q Consensus 392 ~G~i~~~~g~~~~~ 405 (723)
+|+++. .|+++++
T Consensus 238 ~G~i~~-~g~~~~~ 250 (279)
T 2ihy_A 238 DGQSIQ-QGAVEDI 250 (279)
T ss_dssp TTEEEE-EEEHHHH
T ss_pred CCEEEE-ECCHHHH
Confidence 999974 5776554
No 62
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.3e-40 Score=361.19 Aligned_cols=217 Identities=24% Similarity=0.345 Sum_probs=166.3
Q ss_pred ceEEEeEEEEeCCee--eeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCC---hHHH
Q 048654 165 DITIDNFSVAARGKE--LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDD---RSAI 239 (723)
Q Consensus 165 ~I~l~nls~~y~~~~--vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~---~~~~ 239 (723)
+|+++||+++|++++ +|+||||+|++|++++|+||||||||||||+|+|+.. |..|+|.+.++++.... ...
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~~- 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPP- 79 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCG-
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECcccccccCCh-
Confidence 599999999999888 9999999999999999999999999999999999865 46778888776653210 000
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTK 319 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 319 (723)
.+..++++.+.... .....+.+++..... ...........++.++|+.+||.+ ..++++.
T Consensus 80 ------------~~r~ig~v~Q~~~l------~~~ltv~eni~~~~~-~~~~~~~~~~~~v~~~l~~~~L~~-~~~~~~~ 139 (353)
T 1oxx_K 80 ------------EDRKIGMVFQTWAL------YPNLTAFENIAFPLT-NMKMSKEEIRKRVEEVAKILDIHH-VLNHFPR 139 (353)
T ss_dssp ------------GGSCEEEEETTSCC------CTTSCHHHHHHGGGT-TSSCCHHHHHHHHHHHHHHTTCGG-GTTSCGG
T ss_pred ------------hhCCEEEEeCCCcc------CCCCCHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHcCCch-HhcCChh
Confidence 01112233221110 111233333322110 011223445678999999999964 5689999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
+|||||||||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|||+||||++++..+||+|++|++|++
T Consensus 140 ~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i 219 (353)
T 1oxx_K 140 ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL 219 (353)
T ss_dssp GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999998888654 68999999999999999999999999999
Q ss_pred EEecCChhhH
Q 048654 396 HFYRGNFDDF 405 (723)
Q Consensus 396 ~~~~g~~~~~ 405 (723)
+. .|+++++
T Consensus 220 ~~-~g~~~~l 228 (353)
T 1oxx_K 220 VQ-VGKPEDL 228 (353)
T ss_dssp EE-EECHHHH
T ss_pred EE-EcCHHHH
Confidence 74 4776655
No 63
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=6.2e-40 Score=340.96 Aligned_cols=199 Identities=25% Similarity=0.307 Sum_probs=154.5
Q ss_pred ceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEE----EEEeeeeecCC-ChHH
Q 048654 165 DITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID----VLLVEQEVVGD-DRSA 238 (723)
Q Consensus 165 ~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~----i~~~~q~~~~~-~~~~ 238 (723)
+|+++|++++|+ ++++|+|+||+|++|++++|+|||||||||||++|+|+..|..|.+. +.|+.|+.... ..+.
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv 83 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSV 83 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBH
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCH
Confidence 599999999998 88999999999999999999999999999999999998765443331 23333332111 1111
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHh---cCchHHHHHHHHHHHhCCCCccccC
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQI---LGSDAAEAQASKILAGLGFTKEMQG 315 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~L~~lgl~~~~~~ 315 (723)
. +++......... ........++.++++.+|+.+ ..+
T Consensus 84 ~---------------------------------------enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~ 123 (253)
T 2nq2_C 84 L---------------------------------------DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTH-LAK 123 (253)
T ss_dssp H---------------------------------------HHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGG-GTT
T ss_pred H---------------------------------------HHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChH-Hhc
Confidence 1 111100000000 011233567889999999964 457
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEe
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~ 391 (723)
+++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|+
T Consensus 124 ~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~ 203 (253)
T 2nq2_C 124 REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLN 203 (253)
T ss_dssp SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 899999999999999999999999999999999999999999999998764 6799999999999999999999999
Q ss_pred CCEEEEecCChhhH
Q 048654 392 DQKLHFYRGNFDDF 405 (723)
Q Consensus 392 ~G~i~~~~g~~~~~ 405 (723)
+|+ + +.|+++++
T Consensus 204 ~G~-~-~~g~~~~~ 215 (253)
T 2nq2_C 204 KQN-F-KFGETRNI 215 (253)
T ss_dssp TTE-E-EEEEHHHH
T ss_pred CCe-E-ecCCHHHH
Confidence 999 5 45766554
No 64
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=8e-40 Score=348.23 Aligned_cols=202 Identities=28% Similarity=0.391 Sum_probs=161.2
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
..|+++||+|+|++. ..+|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 52 ~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 52 GRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp CCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 469999999999743 46899999999999999999999999999999999999999999998874 259
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCC-----------CCCCCcCCCCCCCHHHHHHHHHH
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGL-----------PSHNHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl-----------~~~~~~~~i~~LSGGqkqRv~lA 631 (723)
+|++|++.- + ..++.+.+...... . ....+..+++.+++ .... .....+|||||||||+||
T Consensus 131 ~~v~Q~~~l-f--~~Tv~eNi~~~~~~-~---~~~~~~~~~~~~~l~~~i~~lp~gl~t~~-~~~g~~LSGGqrQRvaiA 202 (306)
T 3nh6_A 131 GVVPQDTVL-F--NDTIADNIRYGRVT-A---GNDEVEAAAQAAGIHDAIMAFPEGYRTQV-GERGLKLSGGEKQRVAIA 202 (306)
T ss_dssp EEECSSCCC-C--SEEHHHHHHTTSTT-C---CHHHHHHHHHHHTCHHHHHHSTTGGGCEE-STTSBCCCHHHHHHHHHH
T ss_pred EEEecCCcc-C--cccHHHHHHhhccc-C---CHHHHHHHHHHhCcHHHHHhccchhhhHh-cCCcCCCCHHHHHHHHHH
Confidence 999997531 1 22433333221111 1 12334444444443 2222 234578999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|||+.+|+||||||||++||+.+...|.+.|.++ +.|||+||||++.+.. | |+|++|++|+|+. .|+++++
T Consensus 203 RAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-a-----D~i~vl~~G~iv~-~G~~~el 275 (306)
T 3nh6_A 203 RTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-A-----DQILVIKDGCIVE-RGRHEAL 275 (306)
T ss_dssp HHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-C-----SEEEEEETTEEEE-EECHHHH
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-C-----CEEEEEECCEEEE-ECCHHHH
Confidence 9999999999999999999999999999999886 4699999999999976 7 4999999999985 5888887
Q ss_pred HH
Q 048654 710 KE 711 (723)
Q Consensus 710 ~~ 711 (723)
..
T Consensus 276 ~~ 277 (306)
T 3nh6_A 276 LS 277 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 65
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.5e-40 Score=339.51 Aligned_cols=203 Identities=28% Similarity=0.396 Sum_probs=163.3
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIG 563 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig 563 (723)
||+++||+++|++. ..+|++|||+|++|++++|+|||||||||||++|+|+++|++|+|.+++. ..++
T Consensus 1 ml~~~~l~~~y~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 1 MLSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp CEEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred CEEEEEEEEEeCCC-CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 58899999999422 35899999999999999999999999999999999999999999998763 2489
Q ss_pred EEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCc----------CCCCCCCHHHHHHHHHHHH
Q 048654 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHL----------TPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 564 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~----------~~i~~LSGGqkqRv~lAra 633 (723)
|++|... .+ ..++.+.+ .+... ... ..+.+..+++.+++...... +++.+|||||||||+||||
T Consensus 80 ~v~q~~~-l~--~~tv~enl-~~~~~-~~~-~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAra 153 (243)
T 1mv5_A 80 FVSQDSA-IM--AGTIRENL-TYGLE-GDY-TDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARA 153 (243)
T ss_dssp EECCSSC-CC--CEEHHHHT-TSCTT-SCS-CHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHH
T ss_pred EEcCCCc-cc--cccHHHHH-hhhcc-CCC-CHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHH
Confidence 9999752 12 12433332 22101 111 23557788888888654332 2457999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|+.+|+||||||||+|||+.+...+.+.|.++ +.|||+||||++++. .|| +|++|++|+++ ..|+++++..
T Consensus 154 l~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d-----~v~~l~~G~i~-~~g~~~~~~~ 226 (243)
T 1mv5_A 154 FLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DAD-----KIYFIEKGQIT-GSGKHNELVA 226 (243)
T ss_dssp HHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCS-----EEEEEETTEEC-CCSCHHHHHH
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCC-----EEEEEECCEEE-EeCCHHHHHh
Confidence 99999999999999999999999999999876 469999999999886 584 99999999997 5688887754
No 66
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.4e-39 Score=337.31 Aligned_cols=198 Identities=30% Similarity=0.415 Sum_probs=163.8
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce-----------eE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL-----------RI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~-----------~i 562 (723)
++|+++||++. .+|+||||+|.+|++++|+|||||||||||++|+|+++|+ |+|.+++.. .+
T Consensus 3 ~~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 3 IVMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred cEEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 37999999986 3799999999999999999999999999999999999999 999987742 48
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC---
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH--- 639 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~--- 639 (723)
+|++|+... ....++.+.+. +... .... .+.+.++++.+||.... ++++.+|||||||||+|||||+.+|+
T Consensus 76 ~~v~q~~~~--~~~~tv~e~l~-~~~~-~~~~-~~~~~~~l~~~~l~~~~-~~~~~~LSgGq~qrv~lAraL~~~p~~~~ 149 (249)
T 2qi9_C 76 AYLSQQQTP--PFATPVWHYLT-LHQH-DKTR-TELLNDVAGALALDDKL-GRSTNQLSGGEWQRVRLAAVVLQITPQAN 149 (249)
T ss_dssp EEECSCCCC--CTTCBHHHHHH-TTCS-STTC-HHHHHHHHHHTTCGGGT-TSBGGGCCHHHHHHHHHHHHHHHHCTTTC
T ss_pred EEECCCCcc--CCCCcHHHHHH-Hhhc-cCCc-HHHHHHHHHHcCChhHh-cCChhhCCHHHHHHHHHHHHHHcCCCcCC
Confidence 999997531 11123333322 2111 1112 56688999999997654 46779999999999999999999999
Q ss_pred ----eEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 640 ----ILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 640 ----lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||||||||+|||+.++..+.++|+++ +.|||+||||++++..+|| +|++|++|+++. .|+++++.
T Consensus 150 ~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d-----~v~~l~~G~i~~-~g~~~~~~ 221 (249)
T 2qi9_C 150 PAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAH-----RAWLLKGGKMLA-SGRREEVL 221 (249)
T ss_dssp TTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS-----EEEEEETTEEEE-EEEHHHHS
T ss_pred CCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEEEECCEEEE-eCCHHHHh
Confidence 99999999999999999999999876 3699999999999999995 999999999974 57877764
No 67
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=5.1e-40 Score=344.22 Aligned_cols=215 Identities=25% Similarity=0.303 Sum_probs=162.5
Q ss_pred ceEEEeEEEEeC--C---eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHH
Q 048654 165 DITIDNFSVAAR--G---KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 165 ~I~l~nls~~y~--~---~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~ 239 (723)
+|+++||+++|+ + +++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.+.++.. .
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~--~--- 74 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKG--Y--- 74 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCH--H---
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECch--H---
Confidence 589999999997 5 689999999999999999999999999999999999865 457788777655421 0
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc-cccCCCC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK-EMQGRPT 318 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~-~~~~~~~ 318 (723)
.++..++++.+.... ......+.+++...... . ........++.++++.+|+.. ...++++
T Consensus 75 -----------~~~~~i~~v~q~~~~-----~~~~~tv~enl~~~~~~-~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 136 (266)
T 2yz2_A 75 -----------EIRRNIGIAFQYPED-----QFFAERVFDEVAFAVKN-F-YPDRDPVPLVKKAMEFVGLDFDSFKDRVP 136 (266)
T ss_dssp -----------HHGGGEEEECSSGGG-----GCCCSSHHHHHHHTTTT-T-CTTSCSHHHHHHHHHHTTCCHHHHTTCCG
T ss_pred -----------HhhhhEEEEeccchh-----hcCCCcHHHHHHHHHHh-c-CCHHHHHHHHHHHHHHcCcCCcccccCCh
Confidence 112223333221100 00011223333211100 0 122223567889999999961 3457999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|++
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i 216 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKK 216 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEE
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998765 67999999999999999999999999999
Q ss_pred EEecCChhhH
Q 048654 396 HFYRGNFDDF 405 (723)
Q Consensus 396 ~~~~g~~~~~ 405 (723)
+. .|+.+++
T Consensus 217 ~~-~g~~~~~ 225 (266)
T 2yz2_A 217 VF-DGTRMEF 225 (266)
T ss_dssp EE-EEEHHHH
T ss_pred EE-eCCHHHH
Confidence 64 4665544
No 68
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.7e-39 Score=332.90 Aligned_cols=201 Identities=24% Similarity=0.356 Sum_probs=156.3
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEcccccccc
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLL 573 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~ 573 (723)
.+|+++||+++|++....+|++|||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +++|++|.... +
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~i~~v~q~~~~-~ 81 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQFSWI-M 81 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--CEEEECSSCCC-C
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--EEEEEecCCcc-c
Confidence 47999999999963334689999999999999999999999999999999999999999999988 48999997531 1
Q ss_pred CccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC----------CCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 574 TMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH----------NHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
. .++.+.+. +.... .......+++.+++... ....++.+|||||||||+|||||+.+|+||||
T Consensus 82 ~--~tv~enl~-~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllL 154 (229)
T 2pze_A 82 P--GTIKENII-FGVSY----DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLL 154 (229)
T ss_dssp S--BCHHHHHH-TTSCC----CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred C--CCHHHHhh-ccCCc----ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1 24333332 21111 11223334444443211 11234579999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHH-HHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 644 DEPTNHLDMQSIDALADA-LDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~-L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||+|||+.+...+.+. +.++ +.|||+||||++++. .|| +|++|++|+++. .|+++++..
T Consensus 155 DEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d-----~v~~l~~G~i~~-~g~~~~~~~ 218 (229)
T 2pze_A 155 DSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KAD-----KILILHEGSSYF-YGTFSELQN 218 (229)
T ss_dssp ESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCS-----EEEEEETTEEEE-EECHHHHHT
T ss_pred ECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCC-----EEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999997 4444 469999999999986 584 999999999974 578877653
No 69
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-39 Score=336.38 Aligned_cols=210 Identities=22% Similarity=0.269 Sum_probs=159.7
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++|++++|++ +|+||||+|++ ++++|+|||||||||||++|+|+.. |..|+|.+.++++.....
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~-------- 67 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPP-------- 67 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCT--------
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCch--------
Confidence 3789999999976 49999999999 9999999999999999999999865 467888887766532110
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
.+..++++.+.... .....+.+++.... ...+......++.++|+.+|+.+ ..++++.+||||
T Consensus 68 -------~~~~i~~v~q~~~l------~~~ltv~enl~~~~---~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LSgG 130 (240)
T 2onk_A 68 -------ERRGIGFVPQDYAL------FPHLSVYRNIAYGL---RNVERVERDRRVREMAEKLGIAH-LLDRKPARLSGG 130 (240)
T ss_dssp -------TTSCCBCCCSSCCC------CTTSCHHHHHHTTC---TTSCHHHHHHHHHHHHHTTTCTT-TTTCCGGGSCHH
T ss_pred -------hhCcEEEEcCCCcc------CCCCcHHHHHHHHH---HHcCCchHHHHHHHHHHHcCCHH-HhcCChhhCCHH
Confidence 01112222221100 11112223221110 01111223567889999999974 457999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecC
Q 048654 325 WRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRG 400 (723)
Q Consensus 325 qrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g 400 (723)
|||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+++. .|
T Consensus 131 qkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~-~g 209 (240)
T 2onk_A 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE-KG 209 (240)
T ss_dssp HHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EC
Confidence 999999999999999999999999999999999999988754 6799999999999999999999999999974 47
Q ss_pred ChhhH
Q 048654 401 NFDDF 405 (723)
Q Consensus 401 ~~~~~ 405 (723)
+.+++
T Consensus 210 ~~~~~ 214 (240)
T 2onk_A 210 KLKEL 214 (240)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 76655
No 70
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=335.16 Aligned_cols=203 Identities=22% Similarity=0.326 Sum_probs=156.0
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccC
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLT 574 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~ 574 (723)
+|+++||++.|++....+|++|||+|.+|++++|+||||||||||+++|+|+++|++|+|.+++ .++|++|... +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~--~- 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--SVAYVPQQAW--I- 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--CEEEECSSCC--C-
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--EEEEEcCCCc--C-
Confidence 6899999999974224689999999999999999999999999999999999999999999988 4899999752 2
Q ss_pred ccccHHHHHHhhCCCCCCCcHHHHHHHH---HHhCCCCCC----CCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCC
Q 048654 575 MEETPVSYLLRLHPDQEGLSKQEAVRAK---LGKFGLPSH----NHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPT 647 (723)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---L~~~gl~~~----~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT 647 (723)
...++.+.+. +.... .......+... ++.+++... ...+++.+|||||||||+|||||+.+|+||||||||
T Consensus 78 ~~~tv~enl~-~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 155 (237)
T 2cbz_A 78 QNDSLRENIL-FGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 155 (237)
T ss_dssp CSEEHHHHHH-TTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred CCcCHHHHhh-Ccccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 1224333332 21111 11111222221 222333211 123567899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHH---Hc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 648 NHLDMQSIDALADALD---EF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 648 ~~LD~~s~~~l~~~L~---~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
++||+.+...+.+.|. ++ +.|||+||||++++. +| |+|++|++|+|+. .|+++++..
T Consensus 156 s~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~-----d~v~~l~~G~i~~-~g~~~~~~~ 217 (237)
T 2cbz_A 156 SAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QV-----DVIIVMSGGKISE-MGSYQELLA 217 (237)
T ss_dssp TTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GS-----SEEEEEETTEEEE-EECHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hC-----CEEEEEeCCEEEE-eCCHHHHhh
Confidence 9999999999999984 33 469999999999875 68 4999999999974 588887654
No 71
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=6.4e-40 Score=332.24 Aligned_cols=192 Identities=21% Similarity=0.304 Sum_probs=156.6
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc------eeEEEEc
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------LRIGRYS 566 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------~~ig~~~ 566 (723)
..+|+++||++.|++ .+|++|||+|.+|++++|+|||||||||||++|+|+++|++|+|.+++. ..++|++
T Consensus 8 ~~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~ 84 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLP 84 (214)
T ss_dssp -CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEEC
T ss_pred CceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEe
Confidence 358999999999974 5899999999999999999999999999999999999999999999874 2599999
Q ss_pred cccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEec
Q 048654 567 QHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD 644 (723)
Q Consensus 567 q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLD 644 (723)
|... ..+++.++.... ...+.. .. ..+.+.++++.+||... .+++.+|||||||||+|||||+.+|+|||||
T Consensus 85 q~~~~~~~~tv~enl~~~-~~~~~~--~~-~~~~~~~~l~~~gl~~~--~~~~~~LSgGqkqrv~laraL~~~p~lllLD 158 (214)
T 1sgw_A 85 EEIIVPRKISVEDYLKAV-ASLYGV--KV-NKNEIMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLVNAEIYVLD 158 (214)
T ss_dssp SSCCCCTTSBHHHHHHHH-HHHTTC--CC-CHHHHHHHHHHTTCCCT--TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred CCCcCCCCCCHHHHHHHH-HHhcCC--ch-HHHHHHHHHHHcCCCcC--CCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9743 223444443211 122111 11 24668889999999765 5678999999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeE
Q 048654 645 EPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 645 EPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i 699 (723)
|||++||+.++..+.+.|.++. .|||+||||++++..+|| +|++ -.|+|
T Consensus 159 EPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d-----~v~~-~~~~~ 210 (214)
T 1sgw_A 159 DPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNE-----NLHK-YSTKI 210 (214)
T ss_dssp STTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEE-----EGGG-GBC--
T ss_pred CCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC-----EEEE-eCCcc
Confidence 9999999999999999998763 589999999999998884 6664 45665
No 72
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=5.8e-39 Score=332.54 Aligned_cols=211 Identities=25% Similarity=0.367 Sum_probs=155.9
Q ss_pred ceEEEeEEEEe--CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 165 DITIDNFSVAA--RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 165 ~I~l~nls~~y--~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
+|+++||+++| +++++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.+.++......
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~~~~~~----- 79 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPN----- 79 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHH-----
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHH-----
Confidence 58999999999 46789999999999999999999999999999999999865 4578888877665432211
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc----------c
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK----------E 312 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~----------~ 312 (723)
.++..++++.+.... . ...+.+++... .......++.++++.+|+.. .
T Consensus 80 --------~~~~~i~~v~Q~~~l------~-~~tv~enl~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 80 --------WLRRQVGVVLQDNVL------L-NRSIIDNISLA-------NPGMSVEKVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp --------HHHHHEEEECSSCCC------T-TSBHHHHHTTT-------CTTCCHHHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred --------HHHhcEEEEeCCCcc------c-cccHHHHHhcc-------CCCCCHHHHHHHHHHhChHHHHHhCcchhhh
Confidence 123334444332111 0 11222222110 00011234455555555532 1
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEE
Q 048654 313 MQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHL 390 (723)
Q Consensus 313 ~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L 390 (723)
..++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++.. ||+|++|
T Consensus 138 ~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l 216 (247)
T 2ff7_A 138 IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVM 216 (247)
T ss_dssp BCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEE
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEE
Confidence 234567899999999999999999999999999999999999999999999865 6899999999999865 9999999
Q ss_pred eCCEEEEecCChhhHH
Q 048654 391 HDQKLHFYRGNFDDFE 406 (723)
Q Consensus 391 ~~G~i~~~~g~~~~~~ 406 (723)
++|+++. .|+.+++.
T Consensus 217 ~~G~i~~-~g~~~~l~ 231 (247)
T 2ff7_A 217 EKGKIVE-QGKHKELL 231 (247)
T ss_dssp ETTEEEE-EECHHHHH
T ss_pred ECCEEEE-ECCHHHHH
Confidence 9999974 57766553
No 73
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=5.4e-39 Score=335.24 Aligned_cols=203 Identities=26% Similarity=0.371 Sum_probs=161.2
Q ss_pred CeEEEEEEEEEcCCCc-ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------ee
Q 048654 494 PLLQLIEVSFSYPNRE-DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LR 561 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~-~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ 561 (723)
.+|+++||+++|++.. ..+|+||||+|++|++++|+||||||||||+++|+|+++| +|+|.+++. ..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 4799999999997531 3589999999999999999999999999999999999997 899998763 24
Q ss_pred EEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC-------C---CcCCCCCCCHHHHHHHHHH
Q 048654 562 IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH-------N---HLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 562 ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~-------~---~~~~i~~LSGGqkqRv~lA 631 (723)
++|++|.+.- + ..++.+.+. +... .. ..+.+.++++.+++... . ..+++.+|||||||||+||
T Consensus 95 i~~v~Q~~~l-~--~~tv~enl~-~~~~--~~-~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lA 167 (260)
T 2ghi_A 95 IGIVPQDTIL-F--NETIKYNIL-YGKL--DA-TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIA 167 (260)
T ss_dssp EEEECSSCCC-C--SEEHHHHHH-TTCT--TC-CHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHH
T ss_pred EEEEcCCCcc-c--ccCHHHHHh-ccCC--CC-CHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHH
Confidence 8999997531 2 224444332 2111 11 23456667777765321 0 1245689999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|||+.+|+||||||||++||+.+...+.+.|.++. .|||+||||++++. .| |+|++|++|+|+. .|+++++
T Consensus 168 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~-----d~i~~l~~G~i~~-~g~~~~l 240 (260)
T 2ghi_A 168 RCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SA-----ESIILLNKGKIVE-KGTHKDL 240 (260)
T ss_dssp HHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TC-----SEEEEEETTEEEE-EECHHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hC-----CEEEEEECCEEEE-ECCHHHH
Confidence 99999999999999999999999999999998874 69999999999885 47 4999999999974 5888776
Q ss_pred HH
Q 048654 710 KE 711 (723)
Q Consensus 710 ~~ 711 (723)
..
T Consensus 241 ~~ 242 (260)
T 2ghi_A 241 LK 242 (260)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 74
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=7.5e-39 Score=340.75 Aligned_cols=215 Identities=24% Similarity=0.362 Sum_probs=159.2
Q ss_pred cceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 164 KDITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 164 ~~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
..|+++||+|+|+ ++++|+||||+|++|+++|||||||||||||+++|+|++. |..|.|.+.+.++...+..
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i~~~~~~----- 124 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDISQVTQA----- 124 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEETTSBCHH-----
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEcccCCHH-----
Confidence 4699999999995 5789999999999999999999999999999999999875 4577888887776543321
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHH-----HHHHHHHHHhC--CCCccccC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAA-----EAQASKILAGL--GFTKEMQG 315 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~L~~l--gl~~~~~~ 315 (723)
.++..++++.+.... ....+.+++.... .....+.. ...+.+++..+ |+.. ..+
T Consensus 125 --------~~r~~i~~v~Q~~~l-------f~~Tv~eNi~~~~---~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t-~~~ 185 (306)
T 3nh6_A 125 --------SLRSHIGVVPQDTVL-------FNDTIADNIRYGR---VTAGNDEVEAAAQAAGIHDAIMAFPEGYRT-QVG 185 (306)
T ss_dssp --------HHHHTEEEECSSCCC-------CSEEHHHHHHTTS---TTCCHHHHHHHHHHHTCHHHHHHSTTGGGC-EES
T ss_pred --------HHhcceEEEecCCcc-------CcccHHHHHHhhc---ccCCHHHHHHHHHHhCcHHHHHhccchhhh-Hhc
Confidence 233444554432211 0112222221100 00011110 11123344444 4543 346
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCC
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G 393 (723)
+.+.+|||||||||+|||||+.+|+||||||||++||+.+...|.+.|.++ ++|||+||||++++.. ||+|++|++|
T Consensus 186 ~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 186 ERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETT
T ss_pred CCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECC
Confidence 788999999999999999999999999999999999999999999999865 6799999999999987 9999999999
Q ss_pred EEEEecCChhhHH
Q 048654 394 KLHFYRGNFDDFE 406 (723)
Q Consensus 394 ~i~~~~g~~~~~~ 406 (723)
+|+. .|+++++.
T Consensus 265 ~iv~-~G~~~el~ 276 (306)
T 3nh6_A 265 CIVE-RGRHEALL 276 (306)
T ss_dssp EEEE-EECHHHHH
T ss_pred EEEE-ECCHHHHH
Confidence 9975 58877664
No 75
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3.5e-39 Score=338.60 Aligned_cols=214 Identities=26% Similarity=0.375 Sum_probs=160.6
Q ss_pred cceEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 164 KDITIDNFSVAARG---KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 164 ~~I~l~nls~~y~~---~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
.+|+++||+++|++ +++|+||||+|++|++++|+|||||||||||++|+|++. |..|.|.+.+.++......
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~--- 89 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLVQYDHH--- 89 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBCHH---
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcccCCHH---
Confidence 46999999999986 789999999999999999999999999999999999865 4578888877665322111
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCc-hH-----HHHHHHHHHHhC--CCCcc
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGS-DA-----AEAQASKILAGL--GFTKE 312 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~-----~~~~~~~~L~~l--gl~~~ 312 (723)
.++..++++.+.... . ...+.+++.... ..... .. ....+.++++.+ |+..
T Consensus 90 ----------~~~~~i~~v~Q~~~l------~-~~tv~enl~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~- 148 (271)
T 2ixe_A 90 ----------YLHTQVAAVGQEPLL------F-GRSFRENIAYGL---TRTPTMEEITAVAMESGAHDFISGFPQGYDT- 148 (271)
T ss_dssp ----------HHHHHEEEECSSCCC------C-SSBHHHHHHTTC---SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGS-
T ss_pred ----------HHhccEEEEecCCcc------c-cccHHHHHhhhc---ccCChHHHHHHHHHHHhHHHHHHhhhcchhh-
Confidence 123344444332111 0 112222221100 00111 11 122356778888 6753
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEE
Q 048654 313 MQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 313 ~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii 388 (723)
..++++.+|||||||||+|||||+.+|+||||||||++||+.++..|.++|+++ +.|||+||||++++.. ||+|+
T Consensus 149 ~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~ 227 (271)
T 2ixe_A 149 EVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHIL 227 (271)
T ss_dssp BCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEE
T ss_pred hhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEE
Confidence 457889999999999999999999999999999999999999999999999875 4699999999999975 99999
Q ss_pred EEeCCEEEEecCChhhH
Q 048654 389 HLHDQKLHFYRGNFDDF 405 (723)
Q Consensus 389 ~L~~G~i~~~~g~~~~~ 405 (723)
+|++|+++. .|+.+++
T Consensus 228 ~l~~G~i~~-~g~~~~l 243 (271)
T 2ixe_A 228 FLKEGSVCE-QGTHLQL 243 (271)
T ss_dssp EEETTEEEE-EECHHHH
T ss_pred EEECCEEEE-ECCHHHH
Confidence 999999974 5776655
No 76
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=7.7e-39 Score=334.28 Aligned_cols=207 Identities=22% Similarity=0.306 Sum_probs=160.2
Q ss_pred ceEEEeEEEEeCC----eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 165 DITIDNFSVAARG----KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 165 ~I~l~nls~~y~~----~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
+|+++|++++|++ +++|+|+||+|+ |++++|+|||||||||||++|+|+. | ..|+|.+.+.++... ..
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~~~-~~--- 72 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVRKI-RN--- 72 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGGGC-SC---
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECcch-HH---
Confidence 3889999999987 889999999999 9999999999999999999999986 4 577887776654211 00
Q ss_pred HHHHhhHHHHHHHHHHH-hhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCC
Q 048654 241 AVVSAHEELVKLREEVA-SLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTK 319 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 319 (723)
+..++ ++.+... . ...+.+++.... .+. . ....++.++++.+|+.....++++.
T Consensus 73 ------------~~~i~~~v~Q~~~-------l-~~tv~enl~~~~-~~~--~--~~~~~~~~~l~~~gl~~~~~~~~~~ 127 (263)
T 2pjz_A 73 ------------YIRYSTNLPEAYE-------I-GVTVNDIVYLYE-ELK--G--LDRDLFLEMLKALKLGEEILRRKLY 127 (263)
T ss_dssp ------------CTTEEECCGGGSC-------T-TSBHHHHHHHHH-HHT--C--CCHHHHHHHHHHTTCCGGGGGSBGG
T ss_pred ------------hhheEEEeCCCCc-------c-CCcHHHHHHHhh-hhc--c--hHHHHHHHHHHHcCCChhHhcCChh
Confidence 01122 2222110 0 112233332211 111 1 1245688999999997234579999
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCC-EEEEEeCCEEEEe
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCT-EIIHLHDQKLHFY 398 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad-~Ii~L~~G~i~~~ 398 (723)
+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+++..|||+||||++++..+|| +|++|++|+++.
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~- 206 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQG- 206 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEE-
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEE-
Confidence 999999999999999999999999999999999999999999999885599999999999999999 999999999964
Q ss_pred cCChhhH
Q 048654 399 RGNFDDF 405 (723)
Q Consensus 399 ~g~~~~~ 405 (723)
.|+.+++
T Consensus 207 ~g~~~~l 213 (263)
T 2pjz_A 207 PISVSEL 213 (263)
T ss_dssp EEEHHHH
T ss_pred ecCHHHH
Confidence 4666554
No 77
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.3e-38 Score=330.13 Aligned_cols=207 Identities=26% Similarity=0.273 Sum_probs=159.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
+|+++||+++ ++|+|+||+|++|++++|+|||||||||||++|+|+..| . |+|.+.+.++......
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~-G~i~~~g~~~~~~~~~------- 69 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--K-GSIQFAGQPLEAWSAT------- 69 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--E-EEEEETTEEGGGSCHH-------
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--C-eEEEECCEECCcCCHH-------
Confidence 5899999986 799999999999999999999999999999999998754 4 7787777655322111
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
.++..++++.+.... .....+.+++... ...... ..++.++++.+|+.+ ..++++.+||||
T Consensus 70 ------~~~~~i~~v~q~~~~------~~~~tv~e~l~~~----~~~~~~--~~~~~~~l~~~~l~~-~~~~~~~~LSgG 130 (249)
T 2qi9_C 70 ------KLALHRAYLSQQQTP------PFATPVWHYLTLH----QHDKTR--TELLNDVAGALALDD-KLGRSTNQLSGG 130 (249)
T ss_dssp ------HHHHHEEEECSCCCC------CTTCBHHHHHHTT----CSSTTC--HHHHHHHHHHTTCGG-GTTSBGGGCCHH
T ss_pred ------HHhceEEEECCCCcc------CCCCcHHHHHHHh----hccCCc--HHHHHHHHHHcCChh-HhcCChhhCCHH
Confidence 123334444332111 1111223322110 000111 567889999999964 557899999999
Q ss_pred HHHHHHHHHHHccCCC-------EEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 325 WRMRISLARALFVQPT-------LLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 325 qrQRvaLArAL~~~P~-------lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
|||||+|||||+.+|+ ||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|++|++|+
T Consensus 131 q~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~ 210 (249)
T 2qi9_C 131 EWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGK 210 (249)
T ss_dssp HHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred HHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999 99999999999999999999998765 6799999999999999999999999999
Q ss_pred EEEecCChhhH
Q 048654 395 LHFYRGNFDDF 405 (723)
Q Consensus 395 i~~~~g~~~~~ 405 (723)
++. .|+++++
T Consensus 211 i~~-~g~~~~~ 220 (249)
T 2qi9_C 211 MLA-SGRREEV 220 (249)
T ss_dssp EEE-EEEHHHH
T ss_pred EEE-eCCHHHH
Confidence 974 4666554
No 78
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.9e-38 Score=328.03 Aligned_cols=210 Identities=23% Similarity=0.329 Sum_probs=155.9
Q ss_pred cceEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHH
Q 048654 164 KDITIDNFSVAARG---KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 164 ~~I~l~nls~~y~~---~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
.+|+++||+++|++ +++|+||||+|++|++++|+|||||||||||++|+|++. + .|.|.+.+.++......
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~~--- 89 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNRN--- 89 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCHH---
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCHH---
Confidence 46999999999986 469999999999999999999999999999999999864 4 68888877665322111
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcc--------
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKE-------- 312 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~-------- 312 (723)
.++..++++.+.... . ...+.+++.. ..... ...++.++++.+++...
T Consensus 90 ----------~~~~~i~~v~Q~~~l------~-~~tv~enl~~-----~~~~~--~~~~~~~~l~~~~l~~~~~~l~~~~ 145 (260)
T 2ghi_A 90 ----------SIRSIIGIVPQDTIL------F-NETIKYNILY-----GKLDA--TDEEVIKATKSAQLYDFIEALPKKW 145 (260)
T ss_dssp ----------HHHTTEEEECSSCCC------C-SEEHHHHHHT-----TCTTC--CHHHHHHHHHHTTCHHHHHTSTTGG
T ss_pred ----------HHhccEEEEcCCCcc------c-ccCHHHHHhc-----cCCCC--CHHHHHHHHHHhCCHHHHHhccccc
Confidence 122333444332111 0 1122222211 00111 12345566666665321
Q ss_pred --ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEE
Q 048654 313 --MQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 313 --~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii 388 (723)
..++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++. .||+|+
T Consensus 146 ~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~ 224 (260)
T 2ghi_A 146 DTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESII 224 (260)
T ss_dssp GCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEE
T ss_pred cccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEE
Confidence 124678899999999999999999999999999999999999999999999865 579999999999986 599999
Q ss_pred EEeCCEEEEecCChhhH
Q 048654 389 HLHDQKLHFYRGNFDDF 405 (723)
Q Consensus 389 ~L~~G~i~~~~g~~~~~ 405 (723)
+|++|+++. .|+.+++
T Consensus 225 ~l~~G~i~~-~g~~~~l 240 (260)
T 2ghi_A 225 LLNKGKIVE-KGTHKDL 240 (260)
T ss_dssp EEETTEEEE-EECHHHH
T ss_pred EEECCEEEE-ECCHHHH
Confidence 999999974 5777665
No 79
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.6e-38 Score=345.75 Aligned_cols=202 Identities=25% Similarity=0.340 Sum_probs=165.1
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------ee
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LR 561 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ 561 (723)
...|+++||+++|++....+|+||||+|++||+++|+|||||||||||++|+|+++ ++|+|.+++. ..
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 35699999999995333568999999999999999999999999999999999998 8999998873 35
Q ss_pred EEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCC-----------CCHHHHHHHHH
Q 048654 562 IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAK-----------LSGGQKARVVF 630 (723)
Q Consensus 562 ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~-----------LSGGqkqRv~l 630 (723)
++|++|+..- +. .+..+.+ ..+.. ...+++.++++.++|..... +.+.+ |||||||||+|
T Consensus 96 ig~v~Q~~~l-f~--~tv~enl-~~~~~----~~~~~v~~~l~~~~L~~~~~-~~p~~l~~~i~~~g~~LSGGqrQRval 166 (390)
T 3gd7_A 96 FGVIPQKVFI-FS--GTFRKNL-DPNAA----HSDQEIWKVADEVGLRSVIE-QFPGKLDFVLVDGGCVLSHGHKQLMCL 166 (390)
T ss_dssp EEEESCCCCC-CS--EEHHHHH-CTTCC----SCHHHHHHHHHHTTCHHHHT-TSTTGGGCEECTTTTTSCHHHHHHHHH
T ss_pred EEEEcCCccc-Cc--cCHHHHh-hhccc----cCHHHHHHHHHHhCCHHHHh-hcccccccccccccccCCHHHHHHHHH
Confidence 9999997532 11 2433333 22211 13456888999999975444 44466 99999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||||+.+|+||||||||++||+.++..+.+.|+++. .|||+||||++.+ ..| |||++|++|+|+. .|++++
T Consensus 167 ARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~a-----Dri~vl~~G~i~~-~g~~~e 239 (390)
T 3gd7_A 167 ARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LEC-----DQFLVIEENKVRQ-YDSILE 239 (390)
T ss_dssp HHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTC-----SEEEEEETTEEEE-ESSHHH
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhC-----CEEEEEECCEEEE-ECCHHH
Confidence 999999999999999999999999999999998864 6899999998765 457 5999999999975 588888
Q ss_pred HHH
Q 048654 709 YKE 711 (723)
Q Consensus 709 ~~~ 711 (723)
+..
T Consensus 240 l~~ 242 (390)
T 3gd7_A 240 LYH 242 (390)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 80
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-38 Score=329.92 Aligned_cols=212 Identities=21% Similarity=0.288 Sum_probs=154.2
Q ss_pred ceEEEeEEEEe-CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAA-RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y-~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
+|+++||+++| +++++|+||||+|++|++++|+|||||||||||++|+|++.| ..|.|.+.+.++.......
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~----- 73 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPIDNISLEN----- 73 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEESTTTSCSC-----
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhhhCCHHH-----
Confidence 38899999999 678899999999999999999999999999999999998765 4566666666553211100
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccc----------
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEM---------- 313 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~---------- 313 (723)
++..++++.+.... . ...+.+++... ........++.++++.+|+.+..
T Consensus 74 --------~~~~i~~v~q~~~l------~-~~tv~enl~~~------~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~ 132 (243)
T 1mv5_A 74 --------WRSQIGFVSQDSAI------M-AGTIRENLTYG------LEGDYTDEDLWQVLDLAFARSFVENMPDQLNTE 132 (243)
T ss_dssp --------CTTTCCEECCSSCC------C-CEEHHHHTTSC------TTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCE
T ss_pred --------HHhhEEEEcCCCcc------c-cccHHHHHhhh------ccCCCCHHHHHHHHHHhChHHHHHhCccchhch
Confidence 01122233221110 0 11222221100 00111134567778888775322
Q ss_pred cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEe
Q 048654 314 QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 314 ~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~ 391 (723)
.++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++. .||+|++|+
T Consensus 133 ~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~ 211 (243)
T 1mv5_A 133 VGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIE 211 (243)
T ss_dssp ESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEE
T ss_pred hccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEE
Confidence 13456899999999999999999999999999999999999999998888765 689999999999986 599999999
Q ss_pred CCEEEEecCChhhHH
Q 048654 392 DQKLHFYRGNFDDFE 406 (723)
Q Consensus 392 ~G~i~~~~g~~~~~~ 406 (723)
+|+++ ..|+++++.
T Consensus 212 ~G~i~-~~g~~~~~~ 225 (243)
T 1mv5_A 212 KGQIT-GSGKHNELV 225 (243)
T ss_dssp TTEEC-CCSCHHHHH
T ss_pred CCEEE-EeCCHHHHH
Confidence 99996 457766553
No 81
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=7.6e-38 Score=322.25 Aligned_cols=193 Identities=24% Similarity=0.309 Sum_probs=141.6
Q ss_pred ceEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEE------eeeeecCCCh
Q 048654 165 DITIDNFSVAAR--GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLL------VEQEVVGDDR 236 (723)
Q Consensus 165 ~I~l~nls~~y~--~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~------~~q~~~~~~~ 236 (723)
+|+++||+++|+ ++++|+||||+|++|++++|+|||||||||||++|+|++.|. .|+|.+ +.|+......
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~I~~~g~i~~v~Q~~~~~~~ 80 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV--EGHVAIKGSVAYVPQQAWIQND 80 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE--EEEEEECSCEEEECSSCCCCSE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCEEEEEcCCCcCCCc
Confidence 589999999997 578999999999999999999999999999999999987654 455543 3333221122
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHH---HHHHHhCCCCc--
Q 048654 237 SAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQA---SKILAGLGFTK-- 311 (723)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~L~~lgl~~-- 311 (723)
+..+++ .+... .... ...++ ..+++.+++.+
T Consensus 81 tv~enl--------------~~~~~-----------------------------~~~~-~~~~~~~~~~l~~~~~~~~~~ 116 (237)
T 2cbz_A 81 SLRENI--------------LFGCQ-----------------------------LEEP-YYRSVIQACALLPDLEILPSG 116 (237)
T ss_dssp EHHHHH--------------HTTSC-----------------------------CCTT-HHHHHHHHTTCHHHHTTSTTG
T ss_pred CHHHHh--------------hCccc-----------------------------cCHH-HHHHHHHHHhhHHHHHhcccc
Confidence 221111 10000 0000 00011 11122233211
Q ss_pred --cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHh---hc--CcEEEEEeCCHHHHHhhC
Q 048654 312 --EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLC---RW--KKTLVVVSHDRDFLNTVC 384 (723)
Q Consensus 312 --~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~---~~--~~TVIivsHdl~~l~~ia 384 (723)
...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|. ++ +.|||+||||++++. .|
T Consensus 117 ~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~ 195 (237)
T 2cbz_A 117 DRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QV 195 (237)
T ss_dssp GGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GS
T ss_pred ccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hC
Confidence 12368899999999999999999999999999999999999999999999884 22 579999999999985 69
Q ss_pred CEEEEEeCCEEEEecCChhhH
Q 048654 385 TEIIHLHDQKLHFYRGNFDDF 405 (723)
Q Consensus 385 d~Ii~L~~G~i~~~~g~~~~~ 405 (723)
|+|++|++|+++. .|+++++
T Consensus 196 d~v~~l~~G~i~~-~g~~~~~ 215 (237)
T 2cbz_A 196 DVIIVMSGGKISE-MGSYQEL 215 (237)
T ss_dssp SEEEEEETTEEEE-EECHHHH
T ss_pred CEEEEEeCCEEEE-eCCHHHH
Confidence 9999999999974 5777655
No 82
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.7e-37 Score=317.99 Aligned_cols=200 Identities=24% Similarity=0.352 Sum_probs=141.4
Q ss_pred ceEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEE------EeeeeecCCCh
Q 048654 165 DITIDNFSVAAR--GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL------LVEQEVVGDDR 236 (723)
Q Consensus 165 ~I~l~nls~~y~--~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~------~~~q~~~~~~~ 236 (723)
+|+++|++++|+ ++++|+||||+|++|++++|+|||||||||||++|+|+..|. .|+|. |+.|+......
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~i~~v~q~~~~~~~ 83 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQFSWIMPG 83 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS--EEEEEECSCEEEECSSCCCCSB
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC--ccEEEECCEEEEEecCCcccCC
Confidence 599999999995 578999999999999999999999999999999999987654 45544 33333222112
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCC-ccccC
Q 048654 237 SAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFT-KEMQG 315 (723)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~-~~~~~ 315 (723)
+..+++ .+... ... ...... +.. ..+.+.++.+... ....+
T Consensus 84 tv~enl--------------~~~~~----------~~~----~~~~~~---~~~-------~~l~~~~~~~~~~~~~~~~ 125 (229)
T 2pze_A 84 TIKENI--------------IFGVS----------YDE----YRYRSV---IKA-------CQLEEDISKFAEKDNIVLG 125 (229)
T ss_dssp CHHHHH--------------HTTSC----------CCH----HHHHHH---HHH-------TTCHHHHTTSTTGGGSCBC
T ss_pred CHHHHh--------------hccCC----------cCh----HHHHHH---HHH-------hCcHHHHHhCccccccccc
Confidence 222221 10000 000 000000 000 0112233333221 11234
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc--CcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYL-CRW--KKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L-~~~--~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
+++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.+ .++ +.|||+||||++++. .||+|++|++
T Consensus 126 ~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~ 204 (229)
T 2pze_A 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHE 204 (229)
T ss_dssp TTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEET
T ss_pred CCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEEC
Confidence 567899999999999999999999999999999999999999999964 443 579999999999986 5999999999
Q ss_pred CEEEEecCChhhHH
Q 048654 393 QKLHFYRGNFDDFE 406 (723)
Q Consensus 393 G~i~~~~g~~~~~~ 406 (723)
|+++. .|+++++.
T Consensus 205 G~i~~-~g~~~~~~ 217 (229)
T 2pze_A 205 GSSYF-YGTFSELQ 217 (229)
T ss_dssp TEEEE-EECHHHHH
T ss_pred CEEEE-ECCHHHHH
Confidence 99974 57766553
No 83
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=100.00 E-value=6.1e-39 Score=367.21 Aligned_cols=392 Identities=14% Similarity=0.054 Sum_probs=231.1
Q ss_pred eEEEeEEEEeCCeeeeEeeeE-EEeCCcEEEEECCCCccHHHHHHH--HHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 166 ITIDNFSVAARGKELLKSTSV-RISHGKRYGLVGPNGMGKSTLLKL--LAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl-~i~~Ge~~~LvG~NGsGKSTLlk~--L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
++.+++.+.+++.++|++|+| .|++|++++|+||||||||||+++ ++|+..| +.+.+.+.+.+. .....
T Consensus 13 ~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~--~~g~i~v~g~~~----~~~~~-- 84 (525)
T 1tf7_A 13 SEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF--DEPGVFVTFEET----PQDII-- 84 (525)
T ss_dssp -CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSSC----HHHHH--
T ss_pred ccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEEEEeCC----HHHHH--
Confidence 444556665668899999999 999999999999999999999999 6787543 556666554331 11000
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
.....++++.+. .. ....+....... ..++.+++ ..+.
T Consensus 85 --------~~~~~~g~~~q~------------------~~-~~~~l~~~~~~~-~~~~~~~l--------------~~~~ 122 (525)
T 1tf7_A 85 --------KNARSFGWDLAK------------------LV-DEGKLFILDASP-DPEGQEVV--------------GGFD 122 (525)
T ss_dssp --------HHHGGGTCCHHH------------------HH-HTTSEEEEECCC-CSSCCSCC--------------SSHH
T ss_pred --------HHHHHcCCChHH------------------hh-ccCcEEEEecCc-ccchhhhh--------------cccC
Confidence 000111110000 00 000000000000 00000011 1222
Q ss_pred hHHHHHHHHHHHHc-cCCCEEEEeCCCCC-----CCHHHHHHHHHHHhhc---CcEEEEEeCCHHHH---------HhhC
Q 048654 323 GGWRMRISLARALF-VQPTLLLLDEPTNH-----LDLRAVLWLEEYLCRW---KKTLVVVSHDRDFL---------NTVC 384 (723)
Q Consensus 323 GGqrQRvaLArAL~-~~P~lLLLDEPT~~-----LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l---------~~ia 384 (723)
-++ +.-.++.+|. .+|++|+|||||+. ||+..+..|.++++.+ +.|||+|||+++++ ..+|
T Consensus 123 l~~-~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~la 201 (525)
T 1tf7_A 123 LSA-LIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVS 201 (525)
T ss_dssp HHH-HHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHC
T ss_pred HHH-HHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeee
Confidence 222 2333444442 46899999999984 6899888888877644 78999999999984 5669
Q ss_pred CEEEEEeCCEEEEecCChhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHhhhhccCccc
Q 048654 385 TEIIHLHDQKLHFYRGNFDDFESGYEQRRKEMNKKFEIYEKQVKAAKRSGNRVQQEKVKDRAKSAAAKEASKNKAKGKVD 464 (723)
Q Consensus 385 d~Ii~L~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (723)
|+|++|++|++ .|....+... . +.+.. ..
T Consensus 202 D~vi~L~~~~~---~G~~~r~l~~--------------------------~--------------------k~r~~-~~- 230 (525)
T 1tf7_A 202 DNVVILRNVLE---GERRRRTLEI--------------------------L--------------------KLRGT-SH- 230 (525)
T ss_dssp SEEEEEEEECS---TTCCEEEEEE--------------------------E--------------------EETTS-CC-
T ss_pred eEEEEEEEEcc---CCceeEEEEE--------------------------E--------------------ECCCC-CC-
Confidence 99999998442 1221111000 0 00000 00
Q ss_pred CCCCCCCCCccccccceeeecCCCCCCCCCeEEEEEEEEEcCCCcccceece-EEEEecCcEEEEEcCCCCcHHHHHHHH
Q 048654 465 EDEPLPEAPKKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFKLSDV-DVGIDMGTRVAIVGPNGAGKSTLLNLL 543 (723)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~y~~~~~~~L~~i-sl~i~~Ge~vaIvGpNGsGKSTLlk~L 543 (723)
.....+.......+. .+|.......+.++++++++.|++ |+.+ +..|.+|++++|+||||||||||+++|
T Consensus 231 ---~~~~~~~~i~~~gi~-v~p~~~~~~~~~~~~~~l~~g~~~-----ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l 301 (525)
T 1tf7_A 231 ---MKGEYPFTITDHGIN-IFPLGAMRLTQRSSNVRVSSGVVR-----LDEMCGGGFFKDSIILATGATGTGKTLLVSRF 301 (525)
T ss_dssp ---CCSEEEEEEETTEEE-ECCTTTCCSCCCCCCCEECCSCHH-----HHHHTTSSEESSCEEEEEECTTSSHHHHHHHH
T ss_pred ---CCceEEEEEcCCCEE-EEeccccccccccccceeecChHH-----HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHH
Confidence 000000000000000 011111112345677788776642 2222 448999999999999999999999999
Q ss_pred HcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHH
Q 048654 544 AGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGG 623 (723)
Q Consensus 544 ~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGG 623 (723)
+|...|. |. ..+.+.+|.... ........ + +... .+ +..+|+..... .++.+||||
T Consensus 302 ~g~~~~~-G~------~vi~~~~ee~~~------~l~~~~~~-~----g~~~----~~-~~~~g~~~~~~-~~p~~LS~g 357 (525)
T 1tf7_A 302 VENACAN-KE------RAILFAYEESRA------QLLRNAYS-W----GMDF----EE-MERQNLLKIVC-AYPESAGLE 357 (525)
T ss_dssp HHHHHTT-TC------CEEEEESSSCHH------HHHHHHHT-T----SCCH----HH-HHHTTSEEECC-CCGGGSCHH
T ss_pred HHHHHhC-CC------CEEEEEEeCCHH------HHHHHHHH-c----CCCH----HH-HHhCCCEEEEE-eccccCCHH
Confidence 9998885 43 113344443211 11111111 1 1111 12 22345433333 345799999
Q ss_pred HHHHHHHHHHHccCCCeEEeccCCCCCCHH-----HHHHHHHHHHHc---CceEEEEecCH----------HHHHHhcCc
Q 048654 624 QKARVVFTSISMSKPHILLLDEPTNHLDMQ-----SIDALADALDEF---TGGVVLVSHDS----------RLISRVCDD 685 (723)
Q Consensus 624 qkqRv~lAral~~~p~lLlLDEPT~~LD~~-----s~~~l~~~L~~~---~~tVIivSHD~----------~~~~~~~d~ 685 (723)
|+||+++|+++..+|++|||| ||++||.. .+..+.++++.+ +.|||+||||. .++..+||
T Consensus 358 ~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D- 435 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITD- 435 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCS-
T ss_pred HHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeee-
Confidence 999999999999999999999 99999998 888777766544 57999999999 77888884
Q ss_pred CCCcEEEEEECCe
Q 048654 686 EERSEIWVVENGT 698 (723)
Q Consensus 686 ~~~drv~vl~~G~ 698 (723)
+|++|++|+
T Consensus 436 ----~vi~L~~ge 444 (525)
T 1tf7_A 436 ----TIILLQYVE 444 (525)
T ss_dssp ----EEEEEEEEE
T ss_pred ----EEEEEEEEE
Confidence 999998876
No 84
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-38 Score=321.59 Aligned_cols=199 Identities=19% Similarity=0.265 Sum_probs=152.0
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 243 (723)
..|+++||+++|++ ++|+||||+|++|++++|+|||||||||||++|+|+.. |..|+|.+.+.++. .
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~--~-------- 75 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT--K-------- 75 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG--G--------
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhh--h--------
Confidence 46999999999998 99999999999999999999999999999999999865 45778877766542 0
Q ss_pred HhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCCh
Q 048654 244 SAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSG 323 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSG 323 (723)
.+..++++.+.... .....+.+++..... +... ... ..++.++++.+|+.. . ++++.+|||
T Consensus 76 --------~~~~i~~v~q~~~~------~~~~tv~enl~~~~~-~~~~-~~~-~~~~~~~l~~~gl~~-~-~~~~~~LSg 136 (214)
T 1sgw_A 76 --------VKGKIFFLPEEIIV------PRKISVEDYLKAVAS-LYGV-KVN-KNEIMDALESVEVLD-L-KKKLGELSQ 136 (214)
T ss_dssp --------GGGGEEEECSSCCC------CTTSBHHHHHHHHHH-HTTC-CCC-HHHHHHHHHHTTCCC-T-TSBGGGSCH
T ss_pred --------hcCcEEEEeCCCcC------CCCCCHHHHHHHHHH-hcCC-chH-HHHHHHHHHHcCCCc-C-CCChhhCCH
Confidence 01122333221111 111233333322211 1111 122 567889999999974 4 789999999
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEEEEeCCEE
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii~L~~G~i 395 (723)
||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||+|+++. |+|
T Consensus 137 Gqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~-~~~ 210 (214)
T 1sgw_A 137 GTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYS-TKI 210 (214)
T ss_dssp HHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGB-C--
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeC-Ccc
Confidence 9999999999999999999999999999999999999988765 5799999999999999999988654 555
No 85
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=340.73 Aligned_cols=208 Identities=19% Similarity=0.290 Sum_probs=161.8
Q ss_pred cceEEEeEEEEe--CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 164 KDITIDNFSVAA--RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 164 ~~I~l~nls~~y--~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
..|+++||+|+| +++++|+||||+|++|++++|+|||||||||||++|+|+.. ..|+|.+.++++......
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i~~~~~~---- 90 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLE---- 90 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBTTSSCHH----
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEECCcCChH----
Confidence 469999999999 67889999999999999999999999999999999999853 568888877766433221
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCC-
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS- 320 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~- 320 (723)
.++..++++.+.... . ...+.++ +.... ....+++.++++.+|+.. ..++++.+
T Consensus 91 ---------~~rr~ig~v~Q~~~l------f-~~tv~en-------l~~~~-~~~~~~v~~~l~~~~L~~-~~~~~p~~l 145 (390)
T 3gd7_A 91 ---------QWRKAFGVIPQKVFI------F-SGTFRKN-------LDPNA-AHSDQEIWKVADEVGLRS-VIEQFPGKL 145 (390)
T ss_dssp ---------HHHHTEEEESCCCCC------C-SEEHHHH-------HCTTC-CSCHHHHHHHHHHTTCHH-HHTTSTTGG
T ss_pred ---------HHhCCEEEEcCCccc------C-ccCHHHH-------hhhcc-ccCHHHHHHHHHHhCCHH-HHhhccccc
Confidence 122334444332111 0 1122222 21111 122456788999999964 45788887
Q ss_pred ----------CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEE
Q 048654 321 ----------FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 321 ----------LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii 388 (723)
|||||||||+|||||+.+|+||||||||++||+..+..+.+.|+++ +.|||+||||++.+. .||+|+
T Consensus 146 ~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~ 224 (390)
T 3gd7_A 146 DFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFL 224 (390)
T ss_dssp GCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEE
T ss_pred ccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEE
Confidence 9999999999999999999999999999999999999999999875 579999999997665 599999
Q ss_pred EEeCCEEEEecCChhhH
Q 048654 389 HLHDQKLHFYRGNFDDF 405 (723)
Q Consensus 389 ~L~~G~i~~~~g~~~~~ 405 (723)
+|++|+|+. .|++.++
T Consensus 225 vl~~G~i~~-~g~~~el 240 (390)
T 3gd7_A 225 VIEENKVRQ-YDSILEL 240 (390)
T ss_dssp EEETTEEEE-ESSHHHH
T ss_pred EEECCEEEE-ECCHHHH
Confidence 999999975 4777665
No 86
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=6.3e-37 Score=324.06 Aligned_cols=196 Identities=25% Similarity=0.352 Sum_probs=142.3
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEcccccccc
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLL 573 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~ 573 (723)
++|+++||++.| ..+|++|||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ .++|++|.... +
T Consensus 39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--~i~~v~Q~~~l-~ 111 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--RISFCSQNSWI-M 111 (290)
T ss_dssp -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--CEEEECSSCCC-C
T ss_pred ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--EEEEEeCCCcc-C
Confidence 479999999864 2489999999999999999999999999999999999999999999987 48999997421 2
Q ss_pred CccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC----------CCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 574 TMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH----------NHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
. .+..+.+. ... . ....+..++..+++... ....++.+|||||||||+|||||+.+|+||||
T Consensus 112 ~--~tv~enl~-~~~-~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllL 183 (290)
T 2bbs_A 112 P--GTIKENII-GVS-Y----DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLL 183 (290)
T ss_dssp S--SBHHHHHH-TTC-C----CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred c--ccHHHHhh-Ccc-c----chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 1 24444333 111 1 11223334444444211 01124579999999999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHHHH-HHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 644 DEPTNHLDMQSIDALADAL-DEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~L-~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
||||+|||+.++..+.+.| .++ +.|||+||||++++. .|| +|++|++|+++. .|+++++..
T Consensus 184 DEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d-----~i~~l~~G~i~~-~g~~~~l~~ 247 (290)
T 2bbs_A 184 DSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KAD-----KILILHEGSSYF-YGTFSELQN 247 (290)
T ss_dssp ESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSS-----EEEEEETTEEEE-EECHHHHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCC-----EEEEEECCeEEE-eCCHHHHhh
Confidence 9999999999999999964 444 469999999999985 584 999999999974 588877643
No 87
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=4.4e-36 Score=347.52 Aligned_cols=205 Identities=26% Similarity=0.363 Sum_probs=163.8
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
..|+++||+|+|++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 479999999999753246899999999999999999999999999999999999999999998773 258
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCC----------cCCCCCCCHHHHHHHHHHH
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNH----------LTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~----------~~~i~~LSGGqkqRv~lAr 632 (723)
+|++|++.- + ..+..+.+. +... .. ...+++.++++.+++.+... ..+..+|||||||||+|||
T Consensus 420 ~~v~Q~~~l-~--~~tv~eni~-~~~~-~~-~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAr 493 (582)
T 3b5x_A 420 ALVSQNVHL-F--NDTIANNIA-YAAE-GE-YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIAR 493 (582)
T ss_pred EEEcCCCcc-c--cccHHHHHh-ccCC-CC-CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHH
Confidence 999997531 1 123333322 1110 01 12455677777776643211 1245799999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||+.+|+||||||||++||+.+...+.+.|+++. .|||+||||++.+. .| |+|++|++|+|+. .|+++++.
T Consensus 494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~-----d~i~~l~~G~i~~-~g~~~~l~ 566 (582)
T 3b5x_A 494 ALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QA-----DEILVVDEGEIIE-RGRHADLL 566 (582)
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hC-----CEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999999999999998873 69999999999986 67 4999999999985 58888875
Q ss_pred H
Q 048654 711 E 711 (723)
Q Consensus 711 ~ 711 (723)
+
T Consensus 567 ~ 567 (582)
T 3b5x_A 567 A 567 (582)
T ss_pred h
Confidence 4
No 88
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4e-36 Score=347.54 Aligned_cols=203 Identities=32% Similarity=0.433 Sum_probs=162.6
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
.-|+++||+|+|++...++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 469999999999864456899999999999999999999999999999999999999999999873 259
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCC-----------CCCcCCCCCCCHHHHHHHHHH
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPS-----------HNHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~-----------~~~~~~i~~LSGGqkqRv~lA 631 (723)
+|++|+..- ...+..+.+....+.. ..+++.+.++..++.+ ... ....+|||||||||+||
T Consensus 418 ~~v~Q~~~l---~~~tv~eni~~~~~~~----~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~-~~g~~LSgGq~Qrv~lA 489 (578)
T 4a82_A 418 GLVQQDNIL---FSDTVKENILLGRPTA----TDEEVVEAAKMANAHDFIMNLPQGYDTEVG-ERGVKLSGGQKQRLSIA 489 (578)
T ss_dssp EEECSSCCC---CSSBHHHHHGGGCSSC----CHHHHHHHHHHTTCHHHHHTSTTGGGCBCC-GGGTTSCHHHHHHHHHH
T ss_pred EEEeCCCcc---CcccHHHHHhcCCCCC----CHHHHHHHHHHhCcHHHHHhCcchhhhhhc-cCCCcCCHHHHHHHHHH
Confidence 999997421 1224334332222211 2344555555554421 111 23468999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|||+.+|+||||||||++||+.+...+.+.|+++. .|+|+||||++.+. .| |+|++|++|+|+. .|+++++
T Consensus 490 ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~-----d~i~~l~~G~i~~-~g~~~el 562 (578)
T 4a82_A 490 RIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HA-----DKIVVIENGHIVE-TGTHREL 562 (578)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TC-----SEEEEEETTEEEE-EECHHHH
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cC-----CEEEEEECCEEEE-ECCHHHH
Confidence 99999999999999999999999999999998764 69999999999985 47 5999999999985 5899887
Q ss_pred HH
Q 048654 710 KE 711 (723)
Q Consensus 710 ~~ 711 (723)
.+
T Consensus 563 ~~ 564 (578)
T 4a82_A 563 IA 564 (578)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 89
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=4.3e-36 Score=347.66 Aligned_cols=205 Identities=28% Similarity=0.371 Sum_probs=164.1
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
..|+++||+|+|++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 479999999999743246899999999999999999999999999999999999999999998873 259
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC----------CCcCCCCCCCHHHHHHHHHHH
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH----------NHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~----------~~~~~i~~LSGGqkqRv~lAr 632 (723)
+|++|+..- + ..+..+.+. +... ... ..+++.++++.+++.+. ....+..+|||||||||+|||
T Consensus 420 ~~v~Q~~~l-~--~~tv~eni~-~~~~-~~~-~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAr 493 (582)
T 3b60_A 420 ALVSQNVHL-F--NDTVANNIA-YART-EEY-SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 493 (582)
T ss_dssp EEECSSCCC-C--SSBHHHHHH-TTTT-SCC-CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred eEEccCCcC-C--CCCHHHHHh-ccCC-CCC-CHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHH
Confidence 999997531 1 124333332 2110 011 24556777777766321 112345799999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||+.+|+||||||||++||+.+...+.+.|+++ +.|||+||||++.+. .| |+|++|++|+|+. .|+++++.
T Consensus 494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~-----d~i~~l~~G~i~~-~g~~~~l~ 566 (582)
T 3b60_A 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QA-----DEIVVVEDGIIVE-RGTHSELL 566 (582)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TC-----SEEEEEETTEEEE-EECHHHHH
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hC-----CEEEEEECCEEEE-ecCHHHHH
Confidence 999999999999999999999999999999886 469999999999885 57 5999999999985 58888875
Q ss_pred H
Q 048654 711 E 711 (723)
Q Consensus 711 ~ 711 (723)
+
T Consensus 567 ~ 567 (582)
T 3b60_A 567 A 567 (582)
T ss_dssp H
T ss_pred H
Confidence 4
No 90
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-35 Score=343.44 Aligned_cols=203 Identities=27% Similarity=0.360 Sum_probs=161.8
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
..|+++||+|+|++...++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 469999999999754457999999999999999999999999999999999999999999999873 359
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhC-----------CCCCCCCcCCCCCCCHHHHHHHHHH
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKF-----------GLPSHNHLTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-----------gl~~~~~~~~i~~LSGGqkqRv~lA 631 (723)
+|++|+..- + ..+..+.+....+.. ..+++.+.++.. |+..... ....+|||||||||+||
T Consensus 420 ~~v~Q~~~l-f--~~tv~eni~~~~~~~----~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~-~~~~~LSgGqrQrv~lA 491 (587)
T 3qf4_A 420 SAVPQETVL-F--SGTIKENLKWGREDA----TDDEIVEAAKIAQIHDFIISLPEGYDSRVE-RGGRNFSGGQKQRLSIA 491 (587)
T ss_dssp EEECSSCCC-C--SEEHHHHHTTTCSSC----CHHHHHHHHHHTTCHHHHHTSSSGGGCEEC-SSSCSSCHHHHHHHHHH
T ss_pred EEECCCCcC-c--CccHHHHHhccCCCC----CHHHHHHHHHHhCcHHHHHhcccchhhHhc-CCCCCcCHHHHHHHHHH
Confidence 999997531 1 224333332111111 223333444333 3332222 45579999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
|||+.+|+||||||||++||+.+...+.+.|+++. .|||+||||++.+. .| |+|++|++|+|++ .|+++++
T Consensus 492 Ral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~-----d~i~vl~~G~i~~-~g~~~el 564 (587)
T 3qf4_A 492 RALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LA-----DKILVLHEGKVAG-FGTHKEL 564 (587)
T ss_dssp HHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TS-----SEEEEEETTEEEE-EECHHHH
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hC-----CEEEEEECCEEEE-ECCHHHH
Confidence 99999999999999999999999999999998863 69999999999985 67 5999999999985 5899887
Q ss_pred HH
Q 048654 710 KE 711 (723)
Q Consensus 710 ~~ 711 (723)
.+
T Consensus 565 ~~ 566 (587)
T 3qf4_A 565 LE 566 (587)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 91
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.9e-35 Score=343.04 Aligned_cols=205 Identities=28% Similarity=0.394 Sum_probs=161.1
Q ss_pred EEEEEEEEEcCCC-cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEE
Q 048654 496 LQLIEVSFSYPNR-EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIG 563 (723)
Q Consensus 496 l~~~~ls~~y~~~-~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig 563 (723)
|+++||+|+|+++ ..++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..++
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 421 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIG 421 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEE
T ss_pred EEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceE
Confidence 9999999999753 236899999999999999999999999999999999999999999998873 2599
Q ss_pred EEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCC-------C---CcCCCCCCCHHHHHHHHHHHH
Q 048654 564 RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSH-------N---HLTPIAKLSGGQKARVVFTSI 633 (723)
Q Consensus 564 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~-------~---~~~~i~~LSGGqkqRv~lAra 633 (723)
|++|+..- + ..+..+.+....+...+ ...+++.++++.+++.+. . ......+|||||||||+||||
T Consensus 422 ~v~Q~~~l-~--~~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAra 497 (595)
T 2yl4_A 422 TVSQEPIL-F--SCSIAENIAYGADDPSS-VTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARA 497 (595)
T ss_dssp EECSSCCC-C--SSBHHHHHHTTSSSTTT-SCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHH
T ss_pred EEccCCcc-c--CCCHHHHHhhcCCCccc-cCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHH
Confidence 99997531 1 22433333221111001 134567778888776321 1 112347999999999999999
Q ss_pred HccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 634 SMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 634 l~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
|+.+|+||||||||++||+.+...+.+.|+++ +.|||+||||++.+. .|| +|++|++|+|+. .|+++++.+
T Consensus 498 l~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d-----~i~~l~~G~i~~-~g~~~~l~~ 570 (595)
T 2yl4_A 498 LLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK-NAN-----MVAVLDQGKITE-YGKHEELLS 570 (595)
T ss_dssp HHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHH-HSS-----EEEEEETTEEEE-EECSCC---
T ss_pred HHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-cCC-----EEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999999886 469999999999986 584 999999999985 477766543
No 92
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7e-36 Score=346.73 Aligned_cols=203 Identities=25% Similarity=0.349 Sum_probs=161.1
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeE
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~i 562 (723)
.-|+++||+|+|++. .++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 353 ~~i~~~~v~~~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i 431 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKK-KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSI 431 (598)
T ss_dssp CCEEEEEEECCSSSS-SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred CeEEEEEEEEECCCC-CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhce
Confidence 359999999999753 46899999999999999999999999999999999999999999999873 259
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCc----------CCCCCCCHHHHHHHHHHH
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHL----------TPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~----------~~i~~LSGGqkqRv~lAr 632 (723)
+|++|++.- + ..+..+.+....+.. ..+++.+.++.+++...... ....+|||||||||+|||
T Consensus 432 ~~v~Q~~~l-f--~~tv~eni~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAr 504 (598)
T 3qf4_B 432 GIVLQDTIL-F--STTVKENLKYGNPGA----TDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITR 504 (598)
T ss_dssp EEECTTCCC-C--SSBHHHHHHSSSTTC----CTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHH
T ss_pred EEEeCCCcc-c--cccHHHHHhcCCCCC----CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHH
Confidence 999997531 1 224333332211111 12345555655555321111 122689999999999999
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHH
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYK 710 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~ 710 (723)
||+.+|+||||||||++||+.+...+.+.|.++ +.|||+||||++.+.. || +|++|++|+|+. .|+++++.
T Consensus 505 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d-----~i~~l~~G~i~~-~g~~~~l~ 577 (598)
T 3qf4_B 505 AFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-AD-----LIIVLRDGEIVE-MGKHDELI 577 (598)
T ss_dssp HHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CS-----EEEEECSSSEEE-CSCHHHHH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CC-----EEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999999999999999886 4699999999999865 84 999999999985 68998875
Q ss_pred H
Q 048654 711 E 711 (723)
Q Consensus 711 ~ 711 (723)
+
T Consensus 578 ~ 578 (598)
T 3qf4_B 578 Q 578 (598)
T ss_dssp H
T ss_pred h
Confidence 4
No 93
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1e-34 Score=336.09 Aligned_cols=216 Identities=23% Similarity=0.303 Sum_probs=159.0
Q ss_pred cceEEEeEEEEeC--CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 164 KDITIDNFSVAAR--GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 164 ~~I~l~nls~~y~--~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
..|+++|++|+|+ ++++|+|+||+|++|++++|+||||||||||+++|+|++. |.+|+|.+.+.++...+..
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~i~~~~~~---- 413 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELDVRTVKLK---- 413 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSBGGGBCHH----
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEEcccCCHH----
Confidence 4699999999995 4689999999999999999999999999999999999875 4577888777765433221
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHH-----HHHHHHHHHhC--CCCcccc
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAA-----EAQASKILAGL--GFTKEMQ 314 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~L~~l--gl~~~~~ 314 (723)
.+++.++++++.... . ...+.+++.... .....++. ...+.+++..+ |+.. ..
T Consensus 414 ---------~~r~~i~~v~Q~~~l------f-~~tv~eni~~~~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~-~~ 473 (587)
T 3qf4_A 414 ---------DLRGHISAVPQETVL------F-SGTIKENLKWGR---EDATDDEIVEAAKIAQIHDFIISLPEGYDS-RV 473 (587)
T ss_dssp ---------HHHHHEEEECSSCCC------C-SEEHHHHHTTTC---SSCCHHHHHHHHHHTTCHHHHHTSSSGGGC-EE
T ss_pred ---------HHHhheEEECCCCcC------c-CccHHHHHhccC---CCCCHHHHHHHHHHhCcHHHHHhcccchhh-Hh
Confidence 234445555432211 0 112222221000 00000110 11223444444 5543 34
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++|++
T Consensus 474 ~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~ 552 (587)
T 3qf4_A 474 ERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHE 552 (587)
T ss_dssp CSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEET
T ss_pred cCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEEC
Confidence 6888999999999999999999999999999999999999999999999865 579999999999986 6999999999
Q ss_pred CEEEEecCChhhHHh
Q 048654 393 QKLHFYRGNFDDFES 407 (723)
Q Consensus 393 G~i~~~~g~~~~~~~ 407 (723)
|+++. .|+++++..
T Consensus 553 G~i~~-~g~~~el~~ 566 (587)
T 3qf4_A 553 GKVAG-FGTHKELLE 566 (587)
T ss_dssp TEEEE-EECHHHHHH
T ss_pred CEEEE-ECCHHHHHh
Confidence 99975 588877643
No 94
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=6.4e-35 Score=337.82 Aligned_cols=213 Identities=24% Similarity=0.330 Sum_probs=155.8
Q ss_pred cceEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 164 KDITIDNFSVAARG--KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 164 ~~I~l~nls~~y~~--~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
..|+++||+|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|++.| ..|+|.+.+.++...+..
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~~~~~~~~---- 413 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHDVRDYKLT---- 413 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEhhhCCHH----
Confidence 46999999999974 6899999999999999999999999999999999998765 456677766655322211
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc----------
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK---------- 311 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---------- 311 (723)
.+++.++++++.... ....+.+++... .. ....++++.++++.+|+.+
T Consensus 414 ---------~~~~~i~~v~Q~~~l-------~~~tv~eni~~~-----~~-~~~~~~~~~~~~~~~~l~~~~~~~p~g~~ 471 (582)
T 3b5x_A 414 ---------NLRRHFALVSQNVHL-------FNDTIANNIAYA-----AE-GEYTREQIEQAARQAHAMEFIENMPQGLD 471 (582)
T ss_pred ---------HHhcCeEEEcCCCcc-------ccccHHHHHhcc-----CC-CCCCHHHHHHHHHHCCCHHHHHhCccccc
Confidence 123334444332111 011222222110 00 0111334555555555432
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEE
Q 048654 312 EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIH 389 (723)
Q Consensus 312 ~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~ 389 (723)
...++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++
T Consensus 472 t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~ 550 (582)
T 3b5x_A 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILV 550 (582)
T ss_pred chhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEE
Confidence 1224567899999999999999999999999999999999999999999999875 679999999999997 5999999
Q ss_pred EeCCEEEEecCChhhHH
Q 048654 390 LHDQKLHFYRGNFDDFE 406 (723)
Q Consensus 390 L~~G~i~~~~g~~~~~~ 406 (723)
|++|+++. .|+.+++.
T Consensus 551 l~~G~i~~-~g~~~~l~ 566 (582)
T 3b5x_A 551 VDEGEIIE-RGRHADLL 566 (582)
T ss_pred EECCEEEE-ECCHHHHH
Confidence 99999974 58877654
No 95
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.1e-34 Score=335.47 Aligned_cols=211 Identities=23% Similarity=0.335 Sum_probs=155.7
Q ss_pred cceEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 164 KDITIDNFSVAARG--KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 164 ~~I~l~nls~~y~~--~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
..|+++|++|+|++ +++|+|+||+|++|+++||+||||||||||+++|+|++. |.+|+|.+.+.++...+..
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~~~~~~~---- 411 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDFLTG---- 411 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEGGGSCHH----
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHH----
Confidence 46999999999964 579999999999999999999999999999999999875 4577888877766433221
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC-----------CCC
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGL-----------GFT 310 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~l-----------gl~ 310 (723)
.+++.++++.+.... ....+.+++.. ......++++.+.++.. |+.
T Consensus 412 ---------~~r~~i~~v~Q~~~l-------~~~tv~eni~~-------~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~ 468 (578)
T 4a82_A 412 ---------SLRNQIGLVQQDNIL-------FSDTVKENILL-------GRPTATDEEVVEAAKMANAHDFIMNLPQGYD 468 (578)
T ss_dssp ---------HHHHTEEEECSSCCC-------CSSBHHHHHGG-------GCSSCCHHHHHHHHHHTTCHHHHHTSTTGGG
T ss_pred ---------HHhhheEEEeCCCcc-------CcccHHHHHhc-------CCCCCCHHHHHHHHHHhCcHHHHHhCcchhh
Confidence 233444554432111 01122222210 00011122333334333 333
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEE
Q 048654 311 KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 311 ~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii 388 (723)
. ..++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+||||++++.. ||+|+
T Consensus 469 t-~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~ 546 (578)
T 4a82_A 469 T-EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIV 546 (578)
T ss_dssp C-BCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEE
T ss_pred h-hhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEE
Confidence 2 234566799999999999999999999999999999999999999999998765 5799999999999975 99999
Q ss_pred EEeCCEEEEecCChhhHH
Q 048654 389 HLHDQKLHFYRGNFDDFE 406 (723)
Q Consensus 389 ~L~~G~i~~~~g~~~~~~ 406 (723)
+|++|+++. .|+++++.
T Consensus 547 ~l~~G~i~~-~g~~~el~ 563 (578)
T 4a82_A 547 VIENGHIVE-TGTHRELI 563 (578)
T ss_dssp EEETTEEEE-EECHHHHH
T ss_pred EEECCEEEE-ECCHHHHH
Confidence 999999974 58887664
No 96
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=3.2e-34 Score=332.76 Aligned_cols=215 Identities=24% Similarity=0.316 Sum_probs=158.0
Q ss_pred cc-eEEEeEEEEeCC---eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHH
Q 048654 164 KD-ITIDNFSVAARG---KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 164 ~~-I~l~nls~~y~~---~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~ 239 (723)
.. |+++||+|+|++ +++|+|+||+|++|+++||+||||||||||+++|+|++. |.+|+|.+.+.++...+..
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~i~~~~~~-- 414 (595)
T 2yl4_A 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGHDIRQLNPV-- 414 (595)
T ss_dssp CCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTEETTTBCHH--
T ss_pred CCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCEEhhhCCHH--
Confidence 35 999999999975 479999999999999999999999999999999999865 4677888877765432221
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcc-------
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKE------- 312 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~------- 312 (723)
.+++.++++.+.... . ...+.+++.... .......++++.++++.+|+.+.
T Consensus 415 -----------~~~~~i~~v~Q~~~l------~-~~tv~eni~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g 472 (595)
T 2yl4_A 415 -----------WLRSKIGTVSQEPIL------F-SCSIAENIAYGA----DDPSSVTAEEIQRVAEVANAVAFIRNFPQG 472 (595)
T ss_dssp -----------HHHHSEEEECSSCCC------C-SSBHHHHHHTTS----SSTTTSCHHHHHHHHHHTTCHHHHHTSSSG
T ss_pred -----------HHHhceEEEccCCcc------c-CCCHHHHHhhcC----CCccccCHHHHHHHHHHcCCHHHHHhCccc
Confidence 123334444332111 0 112222221100 00000123456677777765321
Q ss_pred ---ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEE
Q 048654 313 ---MQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEI 387 (723)
Q Consensus 313 ---~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~I 387 (723)
..++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|||+||||++.+.. ||+|
T Consensus 473 ~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~-~d~i 551 (595)
T 2yl4_A 473 FNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKN-ANMV 551 (595)
T ss_dssp GGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHH-SSEE
T ss_pred ccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHc-CCEE
Confidence 123456899999999999999999999999999999999999999999999865 6899999999999975 9999
Q ss_pred EEEeCCEEEEecCChhhHH
Q 048654 388 IHLHDQKLHFYRGNFDDFE 406 (723)
Q Consensus 388 i~L~~G~i~~~~g~~~~~~ 406 (723)
++|++|+++. .|+++++.
T Consensus 552 ~~l~~G~i~~-~g~~~~l~ 569 (595)
T 2yl4_A 552 AVLDQGKITE-YGKHEELL 569 (595)
T ss_dssp EEEETTEEEE-EECSCC--
T ss_pred EEEECCEEEE-ECCHHHHH
Confidence 9999999974 57776653
No 97
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.5e-34 Score=334.76 Aligned_cols=213 Identities=23% Similarity=0.310 Sum_probs=158.5
Q ss_pred cceEEEeEEEEeCC--eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHH
Q 048654 164 KDITIDNFSVAARG--KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQA 241 (723)
Q Consensus 164 ~~I~l~nls~~y~~--~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~ 241 (723)
..|+++|++|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|++. |.+|+|.+.+.++...+..
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~~~~~~~---- 413 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLA---- 413 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETTTBCHH----
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEccccCHH----
Confidence 46999999999974 789999999999999999999999999999999999875 4677888877765432221
Q ss_pred HHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCc----------
Q 048654 242 VVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTK---------- 311 (723)
Q Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~---------- 311 (723)
.+++.++++++.... . ...+.+++... .. ....++++.++++.+|+.+
T Consensus 414 ---------~~~~~i~~v~Q~~~l------~-~~tv~eni~~~-----~~-~~~~~~~~~~~l~~~~l~~~~~~~p~g~~ 471 (582)
T 3b60_A 414 ---------SLRNQVALVSQNVHL------F-NDTVANNIAYA-----RT-EEYSREQIEEAARMAYAMDFINKMDNGLD 471 (582)
T ss_dssp ---------HHHHTEEEECSSCCC------C-SSBHHHHHHTT-----TT-SCCCHHHHHHHHHTTTCHHHHHHSTTGGG
T ss_pred ---------HHHhhCeEEccCCcC------C-CCCHHHHHhcc-----CC-CCCCHHHHHHHHHHcCCHHHHHhcccccc
Confidence 123344444332111 0 11222222110 00 0111344555565555432
Q ss_pred cccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEE
Q 048654 312 EMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIH 389 (723)
Q Consensus 312 ~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~ 389 (723)
...++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+||||++.+. .||+|++
T Consensus 472 ~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~ 550 (582)
T 3b60_A 472 TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVV 550 (582)
T ss_dssp SBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEE
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEE
Confidence 1234677899999999999999999999999999999999999999999998765 689999999999987 5999999
Q ss_pred EeCCEEEEecCChhhHH
Q 048654 390 LHDQKLHFYRGNFDDFE 406 (723)
Q Consensus 390 L~~G~i~~~~g~~~~~~ 406 (723)
|++|+++. .|+++++.
T Consensus 551 l~~G~i~~-~g~~~~l~ 566 (582)
T 3b60_A 551 VEDGIIVE-RGTHSELL 566 (582)
T ss_dssp EETTEEEE-EECHHHHH
T ss_pred EECCEEEE-ecCHHHHH
Confidence 99999974 58876653
No 98
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=8.3e-35 Score=307.82 Aligned_cols=196 Identities=25% Similarity=0.399 Sum_probs=127.1
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEE------EeeeeecCCChHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL------LVEQEVVGDDRSA 238 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~------~~~q~~~~~~~~~ 238 (723)
.|+++||++. .+++|+|+||+|++|++++|+|||||||||||++|+|+..|. .|+|. |+.|.......+.
T Consensus 40 ~l~~~~l~~~--~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~--~G~I~~~g~i~~v~Q~~~l~~~tv 115 (290)
T 2bbs_A 40 SLSFSNFSLL--GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSGRISFCSQNSWIMPGTI 115 (290)
T ss_dssp ------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE--EEEEECCSCEEEECSSCCCCSSBH
T ss_pred eEEEEEEEEc--CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC--CcEEEECCEEEEEeCCCccCcccH
Confidence 5899999986 368999999999999999999999999999999999987654 44443 3333322111122
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCC-ccccCCC
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFT-KEMQGRP 317 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~-~~~~~~~ 317 (723)
.+++. . . . . .. ..... .+... .+.+.+..+... ....+++
T Consensus 116 ~enl~-~-------------~-~---~-------~~----~~~~~---~~~~~-------~l~~~l~~~~~~~~~~~~~~ 156 (290)
T 2bbs_A 116 KENII-G-------------V-S---Y-------DE----YRYRS---VIKAC-------QLEEDISKFAEKDNIVLGEG 156 (290)
T ss_dssp HHHHH-T-------------T-C---C-------CH----HHHHH---HHHHT-------TCHHHHHTSTTGGGCBC---
T ss_pred HHHhh-C-------------c-c---c-------ch----HHHHH---HHHHh-------ChHHHHHhccccccchhcCc
Confidence 22111 0 0 0 0 00 00000 00000 112233333221 0122456
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYL-CRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L-~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
+.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.+ .++ +.|||+||||++++. .||+|++|++|+
T Consensus 157 ~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~ 235 (290)
T 2bbs_A 157 GITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGS 235 (290)
T ss_dssp -CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTE
T ss_pred cCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCe
Confidence 7899999999999999999999999999999999999999999964 333 679999999999986 599999999999
Q ss_pred EEEecCChhhH
Q 048654 395 LHFYRGNFDDF 405 (723)
Q Consensus 395 i~~~~g~~~~~ 405 (723)
++. .|+++++
T Consensus 236 i~~-~g~~~~l 245 (290)
T 2bbs_A 236 SYF-YGTFSEL 245 (290)
T ss_dssp EEE-EECHHHH
T ss_pred EEE-eCCHHHH
Confidence 964 5777665
No 99
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1e-34 Score=337.02 Aligned_cols=213 Identities=22% Similarity=0.313 Sum_probs=157.0
Q ss_pred cceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 164 KDITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 164 ~~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
..|+++||+|+|+ ++++|+|+||+|++|+++||+||||||||||+++|+|++. |.+|+|.+.+.++...+..
T Consensus 353 ~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~i~~~~~~----- 425 (598)
T 3qf4_B 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGIDIRKIKRS----- 425 (598)
T ss_dssp CCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEEGGGSCHH-----
T ss_pred CeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEEhhhCCHH-----
Confidence 4699999999996 4679999999999999999999999999999999999875 4677888877776543321
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccc---------
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEM--------- 313 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~--------- 313 (723)
.+++.++++.+.... ....+.+++. .......++++.++++.+++.+..
T Consensus 426 --------~~r~~i~~v~Q~~~l-------f~~tv~eni~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t 483 (598)
T 3qf4_B 426 --------SLRSSIGIVLQDTIL-------FSTTVKENLK-------YGNPGATDEEIKEAAKLTHSDHFIKHLPEGYET 483 (598)
T ss_dssp --------HHHHHEEEECTTCCC-------CSSBHHHHHH-------SSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGC
T ss_pred --------HHHhceEEEeCCCcc-------ccccHHHHHh-------cCCCCCCHHHHHHHHHHhCCHHHHHhccccccc
Confidence 234445555432211 0112222221 100011112334444444442211
Q ss_pred -cCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEE
Q 048654 314 -QGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHL 390 (723)
Q Consensus 314 -~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L 390 (723)
.+..+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+||||++.+.. ||+|++|
T Consensus 484 ~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l 562 (598)
T 3qf4_B 484 VLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVL 562 (598)
T ss_dssp BCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEE
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEE
Confidence 12344789999999999999999999999999999999999999999998765 6899999999999976 9999999
Q ss_pred eCCEEEEecCChhhHHh
Q 048654 391 HDQKLHFYRGNFDDFES 407 (723)
Q Consensus 391 ~~G~i~~~~g~~~~~~~ 407 (723)
++|+++. .|+++++..
T Consensus 563 ~~G~i~~-~g~~~~l~~ 578 (598)
T 3qf4_B 563 RDGEIVE-MGKHDELIQ 578 (598)
T ss_dssp CSSSEEE-CSCHHHHHH
T ss_pred ECCEEEE-ECCHHHHHh
Confidence 9999974 688877643
No 100
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4.2e-33 Score=318.91 Aligned_cols=196 Identities=25% Similarity=0.336 Sum_probs=152.6
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcE----EEEEeeeeecC-CChHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI----DVLLVEQEVVG-DDRSA 238 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~----~i~~~~q~~~~-~~~~~ 238 (723)
..|+++|+++.|++. .|+++||+|.+||++||+||||||||||+++|+|+..|..|.+ .+.|+.|+... ...+
T Consensus 286 ~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~t- 363 (538)
T 1yqt_A 286 TLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGT- 363 (538)
T ss_dssp EEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSB-
T ss_pred eEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCc-
Confidence 469999999999875 6999999999999999999999999999999999877665544 23444443211 0111
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCC
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPT 318 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 318 (723)
+.+.+..... .... ...++.++|+.+|+. ...++++
T Consensus 364 --------------------------------------v~~~~~~~~~--~~~~---~~~~~~~~l~~~~l~-~~~~~~~ 399 (538)
T 1yqt_A 364 --------------------------------------VYELLSKIDA--SKLN---SNFYKTELLKPLGII-DLYDREV 399 (538)
T ss_dssp --------------------------------------HHHHHHHHHH--HHHT---CHHHHHHTTTTTTCG-GGTTSBG
T ss_pred --------------------------------------HHHHHHhhhc--cCCC---HHHHHHHHHHHcCCh-hhhcCCh
Confidence 1111110000 0000 134577889999996 4568999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeC--
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHD-- 392 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~-- 392 (723)
.+|||||||||+|||||+.+|+||||||||+|||+.++..|.++|+++ +.|||+||||++++..+||+|++|++
T Consensus 400 ~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~ 479 (538)
T 1yqt_A 400 NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEP 479 (538)
T ss_dssp GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 999999999999999999999999999999999999999999988754 68999999999999999999999985
Q ss_pred CEEEEecCChhhHH
Q 048654 393 QKLHFYRGNFDDFE 406 (723)
Q Consensus 393 G~i~~~~g~~~~~~ 406 (723)
|++. ..|+++++.
T Consensus 480 ~~~~-~~g~~~~~~ 492 (538)
T 1yqt_A 480 GKYG-RALPPMGMR 492 (538)
T ss_dssp TTEE-EECCCEEHH
T ss_pred ceEe-ecCCHHHHH
Confidence 6664 347776653
No 101
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.3e-33 Score=321.44 Aligned_cols=196 Identities=23% Similarity=0.314 Sum_probs=152.7
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcE----EEEEeeeeecC-CChHH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI----DVLLVEQEVVG-DDRSA 238 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~----~i~~~~q~~~~-~~~~~ 238 (723)
..|+++|+++.|++. .|+++||+|.+||++||+|||||||||||++|+|+..|..|.+ .+.|+.|+... ...+
T Consensus 356 ~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~t- 433 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGT- 433 (607)
T ss_dssp EEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSB-
T ss_pred eEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCc-
Confidence 479999999999874 7999999999999999999999999999999999877665554 23444443211 0111
Q ss_pred HHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCC
Q 048654 239 IQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPT 318 (723)
Q Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~ 318 (723)
+.+.+...... . .....++.++|+.+|+. ...++++
T Consensus 434 --------------------------------------v~e~~~~~~~~--~---~~~~~~~~~~l~~~~l~-~~~~~~~ 469 (607)
T 3bk7_A 434 --------------------------------------VYELLSKIDSS--K---LNSNFYKTELLKPLGII-DLYDRNV 469 (607)
T ss_dssp --------------------------------------HHHHHHHHHHH--H---HHCHHHHHHTHHHHTCT-TTTTSBG
T ss_pred --------------------------------------HHHHHHhhhcc--C---CCHHHHHHHHHHHcCCc-hHhcCCh
Confidence 11111110000 0 01134677889999997 4568999
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeC--
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHD-- 392 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~-- 392 (723)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||+|++|++
T Consensus 470 ~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~ 549 (607)
T 3bk7_A 470 EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEP 549 (607)
T ss_dssp GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCc
Confidence 999999999999999999999999999999999999999999998764 68999999999999999999999985
Q ss_pred CEEEEecCChhhHH
Q 048654 393 QKLHFYRGNFDDFE 406 (723)
Q Consensus 393 G~i~~~~g~~~~~~ 406 (723)
|++. ..|++.++.
T Consensus 550 g~~~-~~g~p~~~~ 562 (607)
T 3bk7_A 550 GRHG-RALPPMGMR 562 (607)
T ss_dssp TTEE-EECCCEEHH
T ss_pred ceEE-ecCCHHHHH
Confidence 6654 347776653
No 102
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=8.7e-33 Score=330.32 Aligned_cols=200 Identities=29% Similarity=0.476 Sum_probs=157.1
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHc-CCCCCcceEEECCceeEEEEcccccccc
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG-DLSPTEGEVRRSQKLRIGRYSQHFVDLL 573 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~G-l~~p~~G~I~~~~~~~ig~~~q~~~~~~ 573 (723)
.|...|+++.|++ ..+|+||||+|.+|++++|+||||||||||||+|+| .+ .|. ......+++|++|.... +
T Consensus 435 ~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i---~g~-~~~~~~~~~~v~q~~~~-~ 507 (986)
T 2iw3_A 435 DLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV---DGF-PTQEECRTVYVEHDIDG-T 507 (986)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS---TTC-CCTTTSCEEETTCCCCC-C
T ss_pred eeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-ccccceeEEEEcccccc-c
Confidence 4556699999975 358999999999999999999999999999999995 22 111 00112346788875321 1
Q ss_pred CccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHH
Q 048654 574 TMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ 653 (723)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~ 653 (723)
....+...++.. ...+. .+++..+|+.|||.....++++.+|||||||||+|||||+.+|+||||||||+|||+.
T Consensus 508 ~~~ltv~e~l~~---~~~~~--~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~ 582 (986)
T 2iw3_A 508 HSDTSVLDFVFE---SGVGT--KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTV 582 (986)
T ss_dssp CTTSBHHHHHHT---TCSSC--HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHH
T ss_pred ccCCcHHHHHHH---hhcCH--HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 112233333322 11122 5678899999999633345788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHH
Q 048654 654 SIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 654 s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~ 711 (723)
++..|.++|++.+.|||+||||++++..+|| +|++|++|+++.+.|+++++..
T Consensus 583 ~~~~l~~~L~~~g~tvIivSHdl~~l~~~ad-----rii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 583 NVAWLVNYLNTCGITSITISHDSVFLDNVCE-----YIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HHHHHHHHHHHSCSEEEEECSCHHHHHHHCS-----EEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHhCC-----EEEEEECCeeecCCCCHHHHHh
Confidence 9999999999966799999999999999995 9999999999766789888754
No 103
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.6e-33 Score=317.98 Aligned_cols=184 Identities=17% Similarity=0.251 Sum_probs=142.0
Q ss_pred cceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEE-----EEEeeeeecC-CChH
Q 048654 164 KDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNID-----VLLVEQEVVG-DDRS 237 (723)
Q Consensus 164 ~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~-----i~~~~q~~~~-~~~~ 237 (723)
..++++|+++.|++ ..|.++||+|++||++||+||||||||||+++|+|+..|..|.+. +.++.|.+.. ...+
T Consensus 268 ~~l~~~~l~~~~~~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~t 346 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGT 346 (538)
T ss_dssp EEEEECCEEEEETT-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSB
T ss_pred ceEEEcceEEEECC-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCC
Confidence 46899999999987 458888999999999999999999999999999998876655442 2233222211 0111
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCC
Q 048654 238 AIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRP 317 (723)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 317 (723)
. .+.+.. ............+.++++.+|+. ...+++
T Consensus 347 v---------------------------------------~~~l~~----~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~ 382 (538)
T 3ozx_A 347 V---------------------------------------QQYLEN----ASKDALSTSSWFFEEVTKRLNLH-RLLESN 382 (538)
T ss_dssp H---------------------------------------HHHHHH----HCSSTTCTTSHHHHHTTTTTTGG-GCTTSB
T ss_pred H---------------------------------------HHHHHH----hhhhccchhHHHHHHHHHHcCCH-HHhcCC
Confidence 1 111100 00000001123467788899996 456899
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
+.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++
T Consensus 383 ~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 383 VNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999988754 67999999999999999999999986
No 104
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=8.1e-33 Score=345.07 Aligned_cols=203 Identities=28% Similarity=0.374 Sum_probs=158.9
Q ss_pred CeEEEEEEEEEcCCC-cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------ee
Q 048654 494 PLLQLIEVSFSYPNR-EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LR 561 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~-~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ 561 (723)
.-|+++||+|+|+++ ..++|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..
T Consensus 386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~ 465 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREI 465 (1284)
T ss_dssp CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHH
T ss_pred CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhh
Confidence 359999999999754 246899999999999999999999999999999999999999999999874 25
Q ss_pred EEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCC-----------CCCCCCcCCCCCCCHHHHHHHHH
Q 048654 562 IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFG-----------LPSHNHLTPIAKLSGGQKARVVF 630 (723)
Q Consensus 562 ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~g-----------l~~~~~~~~i~~LSGGqkqRv~l 630 (723)
++|++|++.- ...++.+.+....+.. ..+.+.+.++..+ +.... .....+|||||||||+|
T Consensus 466 i~~v~Q~~~l---~~~ti~eNi~~g~~~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-~~~g~~LSgGq~Qriai 537 (1284)
T 3g5u_A 466 IGVVSQEPVL---FATTIAENIRYGREDV----TMDEIEKAVKEANAYDFIMKLPHQFDTLV-GERGAQLSGGQKQRIAI 537 (1284)
T ss_dssp EEEECSSCCC---CSSCHHHHHHHHCSSC----CHHHHHHHHHHTTCHHHHHHSTTGGGCCC-SSSSCSSCHHHHHHHHH
T ss_pred eEEEcCCCcc---CCccHHHHHhcCCCCC----CHHHHHHHHHHhCcHHHHHhccccccccc-cCCCCccCHHHHHHHHH
Confidence 9999998531 1123333332222211 1233333333332 22212 23456899999999999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHH
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEE 708 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~ 708 (723)
||||+.+|+||||||||++||+.+...+.+.|+.. +.|+|+|||+++.+.. | |+|++|++|+|++ .|++++
T Consensus 538 ARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~-----d~i~vl~~G~i~~-~g~~~~ 610 (1284)
T 3g5u_A 538 ARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-A-----DVIAGFDGGVIVE-QGNHDE 610 (1284)
T ss_dssp HHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-C-----SEEEECSSSCCCC-EECHHH
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-C-----CEEEEEECCEEEE-ECCHHH
Confidence 99999999999999999999999999999998765 4699999999999965 7 5999999999974 689888
Q ss_pred HHH
Q 048654 709 YKE 711 (723)
Q Consensus 709 ~~~ 711 (723)
+.+
T Consensus 611 l~~ 613 (1284)
T 3g5u_A 611 LMR 613 (1284)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
No 105
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.98 E-value=1.9e-32 Score=342.56 Aligned_cols=203 Identities=26% Similarity=0.323 Sum_probs=162.0
Q ss_pred CeEEEEEEEEEcCCC-cccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------ee
Q 048654 494 PLLQLIEVSFSYPNR-EDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LR 561 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~-~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ 561 (723)
.-|+++||+|+|+++ ..++|+||||+|++|+.+|||||+|||||||+++|.|+++|++|+|.+++. ..
T Consensus 414 g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~ 493 (1321)
T 4f4c_A 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKN 493 (1321)
T ss_dssp CCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhc
Confidence 359999999999754 357899999999999999999999999999999999999999999999873 36
Q ss_pred EEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCC-------CCCC---cCCCCCCCHHHHHHHHHH
Q 048654 562 IGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLP-------SHNH---LTPIAKLSGGQKARVVFT 631 (723)
Q Consensus 562 ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~-------~~~~---~~~i~~LSGGqkqRv~lA 631 (723)
++|++|++. ....++.+.+....+.. ..+++.++++..++. .-.. ...-..||||||||++||
T Consensus 494 i~~v~Q~~~---Lf~~TI~eNI~~g~~~~----~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiA 566 (1321)
T 4f4c_A 494 VAVVSQEPA---LFNCTIEENISLGKEGI----TREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIA 566 (1321)
T ss_dssp EEEECSSCC---CCSEEHHHHHHTTCTTC----CHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHH
T ss_pred ccccCCcce---eeCCchhHHHhhhcccc----hHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHH
Confidence 999999753 12233333332222221 345566666665542 1111 112357999999999999
Q ss_pred HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 632 SISMSKPHILLLDEPTNHLDMQSIDALADALDEF--TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 632 ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
||++++|+||||||||++||.++...+.+.|.++ +.|+|+|||++..+. .| |+|++|++|+|++ .|+++++
T Consensus 567 RAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~a-----D~Iivl~~G~ive-~Gth~eL 639 (1321)
T 4f4c_A 567 RALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NA-----DLIISCKNGQVVE-VGDHRAL 639 (1321)
T ss_dssp HHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TC-----SEEEEEETTEEEE-EECHHHH
T ss_pred HHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hC-----CEEEEeeCCeeec-cCCHHHH
Confidence 9999999999999999999999999999999886 479999999999885 46 5999999999986 5898886
Q ss_pred H
Q 048654 710 K 710 (723)
Q Consensus 710 ~ 710 (723)
.
T Consensus 640 ~ 640 (1321)
T 4f4c_A 640 M 640 (1321)
T ss_dssp H
T ss_pred H
Confidence 4
No 106
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.5e-32 Score=311.90 Aligned_cols=193 Identities=21% Similarity=0.289 Sum_probs=147.2
Q ss_pred EeEEEEeCC-eeeeEeeeEEEeCC-----cEEEEECCCCccHHHHHHHHHhCCCCCCCc----EEEEEeeeeecC-CChH
Q 048654 169 DNFSVAARG-KELLKSTSVRISHG-----KRYGLVGPNGMGKSTLLKLLAWRKIPVPKN----IDVLLVEQEVVG-DDRS 237 (723)
Q Consensus 169 ~nls~~y~~-~~vL~~isl~i~~G-----e~~~LvG~NGsGKSTLlk~L~G~~~~~~~~----~~i~~~~q~~~~-~~~~ 237 (723)
.+++++|++ ..+|+++||++.+| |++||+||||||||||+++|+|+..|..|. ..+.++.|.+.. ...+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~t 429 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGT 429 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSB
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCcc
Confidence 567888876 46899999999999 789999999999999999999998766553 124444443221 1111
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCC
Q 048654 238 AIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRP 317 (723)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 317 (723)
..+. + ...+ .........+.++++.+|+.. ..+++
T Consensus 430 v~e~---------------------------------------~---~~~~--~~~~~~~~~~~~~l~~l~l~~-~~~~~ 464 (608)
T 3j16_B 430 VRQL---------------------------------------F---FKKI--RGQFLNPQFQTDVVKPLRIDD-IIDQE 464 (608)
T ss_dssp HHHH---------------------------------------H---HHHC--SSTTTSHHHHHHTHHHHTSTT-TSSSB
T ss_pred HHHH---------------------------------------H---HHHh--hcccccHHHHHHHHHHcCChh-hhcCC
Confidence 1100 0 0000 000011234567889999974 56899
Q ss_pred CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEeC-
Q 048654 318 TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLHD- 392 (723)
Q Consensus 318 ~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~~- 392 (723)
+.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|+++ +.|||+||||++++..+||||++|++
T Consensus 465 ~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~ 544 (608)
T 3j16_B 465 VQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGI 544 (608)
T ss_dssp SSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEE
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999998888754 68999999999999999999999996
Q ss_pred -CEEEEecCChhhHHh
Q 048654 393 -QKLHFYRGNFDDFES 407 (723)
Q Consensus 393 -G~i~~~~g~~~~~~~ 407 (723)
|++. ..|++.++..
T Consensus 545 ~g~~~-~~g~p~~~~~ 559 (608)
T 3j16_B 545 PSKNA-HARAPESLLT 559 (608)
T ss_dssp TTTEE-ECCCCEEHHH
T ss_pred CCeEE-ecCChHHHhh
Confidence 7775 4677777644
No 107
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.97 E-value=1.2e-30 Score=306.71 Aligned_cols=193 Identities=24% Similarity=0.352 Sum_probs=129.6
Q ss_pred cceeceEEEEecCcEEEEEcCCCCcHHHHH---------------------HHHHcCCCCCcceEE-------ECCc---
Q 048654 511 FKLSDVDVGIDMGTRVAIVGPNGAGKSTLL---------------------NLLAGDLSPTEGEVR-------RSQK--- 559 (723)
Q Consensus 511 ~~L~~isl~i~~Ge~vaIvGpNGsGKSTLl---------------------k~L~Gl~~p~~G~I~-------~~~~--- 559 (723)
.+|+||||+|++|+++||+||||||||||+ +++.|+..|+.|.|. +.+.
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 479999999999999999999999999998 899999999866553 3221
Q ss_pred ----eeEEEEccccc---------------------cccCccccHHHHHHhhC-CCCCC-Cc-----HHHHHHHHHHhCC
Q 048654 560 ----LRIGRYSQHFV---------------------DLLTMEETPVSYLLRLH-PDQEG-LS-----KQEAVRAKLGKFG 607 (723)
Q Consensus 560 ----~~ig~~~q~~~---------------------~~~~~~~~~~~~~~~~~-~~~~~-~~-----~~~~~~~~L~~~g 607 (723)
..+++++|.+. ..+++.++... ..... ..... .. .......+|+.+|
T Consensus 112 ~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 190 (670)
T 3ux8_A 112 RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAF-FDGLELTEKEAQIARLILREIRDRLGFLQNVG 190 (670)
T ss_dssp ---CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHHTT
T ss_pred ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHH-hhccccchhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 12233333211 01122222110 00000 00000 00 0011123588899
Q ss_pred CCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC--eEEeccCCCCCCHHHHHHHHHHHHHc---CceEEEEecCHHHHHHh
Q 048654 608 LPSHNHLTPIAKLSGGQKARVVFTSISMSKPH--ILLLDEPTNHLDMQSIDALADALDEF---TGGVVLVSHDSRLISRV 682 (723)
Q Consensus 608 l~~~~~~~~i~~LSGGqkqRv~lAral~~~p~--lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIivSHD~~~~~~~ 682 (723)
|.....++++.+|||||||||+|||||+.+|+ ||||||||+|||+.++..|.++|+++ +.|||+||||++++. .
T Consensus 191 L~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~ 269 (670)
T 3ux8_A 191 LDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-A 269 (670)
T ss_dssp CTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHH-H
T ss_pred CchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-h
Confidence 97654557889999999999999999999998 99999999999999999999999876 469999999999876 5
Q ss_pred cCcCCCcEEEEE------ECCeEEecCCCHHHHHH
Q 048654 683 CDDEERSEIWVV------ENGTVSRFPGTFEEYKE 711 (723)
Q Consensus 683 ~d~~~~drv~vl------~~G~i~~~~g~~~~~~~ 711 (723)
|| +|++| ++|+++ +.|+++++..
T Consensus 270 ~d-----~ii~l~~g~~~~~G~i~-~~g~~~~~~~ 298 (670)
T 3ux8_A 270 AD-----YLIDIGPGAGIHGGEVV-AAGTPEEVMN 298 (670)
T ss_dssp CS-----EEEEECSSSGGGCCSEE-EEECHHHHHT
T ss_pred CC-----EEEEecccccccCCEEE-EecCHHHHhc
Confidence 84 99999 899997 5688887653
No 108
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.95 E-value=3.3e-28 Score=288.50 Aligned_cols=108 Identities=26% Similarity=0.348 Sum_probs=95.2
Q ss_pred HHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccC---CCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEE
Q 048654 297 EAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQ---PTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTL 370 (723)
Q Consensus 297 ~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~---P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TV 370 (723)
..++.++|+.+||.....++++.+|||||||||+||++|+.+ |+||||||||+|||+.++..|.++|+++ +.||
T Consensus 707 ~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tV 786 (842)
T 2vf7_A 707 IFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTV 786 (842)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 357889999999975445789999999999999999999996 7999999999999999999999888754 6899
Q ss_pred EEEeCCHHHHHhhCCEEEEE------eCCEEEEecCChhhHH
Q 048654 371 VVVSHDRDFLNTVCTEIIHL------HDQKLHFYRGNFDDFE 406 (723)
Q Consensus 371 IivsHdl~~l~~iad~Ii~L------~~G~i~~~~g~~~~~~ 406 (723)
|+||||++++ .+||+|++| ++|+|+ +.|+++++.
T Consensus 787 IvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv-~~g~~~el~ 826 (842)
T 2vf7_A 787 IAVEHKMQVV-AASDWVLDIGPGAGEDGGRLV-AQGTPAEVA 826 (842)
T ss_dssp EEECCCHHHH-TTCSEEEEECSSSGGGCCSEE-EEECHHHHT
T ss_pred EEEcCCHHHH-HhCCEEEEECCCCCCCCCEEE-EEcCHHHHH
Confidence 9999999999 689999999 689996 458877654
No 109
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.95 E-value=5.4e-27 Score=280.22 Aligned_cols=110 Identities=30% Similarity=0.437 Sum_probs=96.5
Q ss_pred HHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CcE
Q 048654 296 AEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP---TLLLLDEPTNHLDLRAVLWLEEYLCRW---KKT 369 (723)
Q Consensus 296 ~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P---~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~T 369 (723)
...++.++|+.+||.....++++.+|||||||||+|||||+.+| +||||||||+|||+.++..|++.|+++ +.|
T Consensus 781 ~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~T 860 (916)
T 3pih_A 781 SIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNT 860 (916)
T ss_dssp HHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred hHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCE
Confidence 34677889999999754557899999999999999999999876 799999999999999999999998765 689
Q ss_pred EEEEeCCHHHHHhhCCEEEEE------eCCEEEEecCChhhHHh
Q 048654 370 LVVVSHDRDFLNTVCTEIIHL------HDQKLHFYRGNFDDFES 407 (723)
Q Consensus 370 VIivsHdl~~l~~iad~Ii~L------~~G~i~~~~g~~~~~~~ 407 (723)
||+||||++++.. ||+|++| ++|+|+ +.|+++++..
T Consensus 861 VIvI~HdL~~i~~-ADrIivLgp~gg~~~G~Iv-~~Gtpeel~~ 902 (916)
T 3pih_A 861 VIVIEHNLDVIKN-ADHIIDLGPEGGKEGGYIV-ATGTPEEIAK 902 (916)
T ss_dssp EEEECCCHHHHTT-CSEEEEEESSSGGGCCEEE-EEESHHHHHS
T ss_pred EEEEeCCHHHHHh-CCEEEEecCCCCCCCCEEE-EEcCHHHHHh
Confidence 9999999999876 9999999 899997 4688877643
No 110
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.3e-31 Score=293.79 Aligned_cols=194 Identities=16% Similarity=0.169 Sum_probs=153.1
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc-e-EEECCc--eeEEEEccc
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG-E-VRRSQK--LRIGRYSQH 568 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G-~-I~~~~~--~~ig~~~q~ 568 (723)
.++++++||++.|+ ++||+|.+|++++|+||||||||||+|+|+|+++|++| + |++++. ..+++++|.
T Consensus 116 ~~mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~ 187 (460)
T 2npi_A 116 HTMKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGC 187 (460)
T ss_dssp CTHHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSC
T ss_pred cchhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccc
Confidence 46788899988874 68999999999999999999999999999999999999 8 988763 357888886
Q ss_pred cc-----cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHH--HccCCCe-
Q 048654 569 FV-----DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSI--SMSKPHI- 640 (723)
Q Consensus 569 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAra--l~~~p~l- 640 (723)
.. ..+++.++. +..... .+......+..++..+|+..... +.+|||||||||+|||+ |+.+|+|
T Consensus 188 ~~l~~~~~~~tv~eni--~~~~~~---~~~~~~~~~~~ll~~~gl~~~~~---~~~LSgGq~qrlalAra~rL~~~p~i~ 259 (460)
T 2npi_A 188 ISATPISDILDAQLPT--WGQSLT---SGATLLHNKQPMVKNFGLERINE---NKDLYLECISQLGQVVGQRLHLDPQVR 259 (460)
T ss_dssp CEEEECCSCCCTTCTT--CSCBCB---SSCCSSCCBCCEECCCCSSSGGG---CHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred hhhcccccccchhhhh--cccccc---cCcchHHHHHHHHHHhCCCcccc---hhhhhHHHHHHHHHHHHHHhccCcccC
Confidence 42 112333332 111100 01001123445678889875432 57999999999999999 9999999
Q ss_pred ---EEecc-CCCCCCHHHHHHHHHHHHHcCceEEEEecCHH------HHHHhcCcCCCcE-----EEEEE-CCeEEecCC
Q 048654 641 ---LLLDE-PTNHLDMQSIDALADALDEFTGGVVLVSHDSR------LISRVCDDEERSE-----IWVVE-NGTVSRFPG 704 (723)
Q Consensus 641 ---LlLDE-PT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~------~~~~~~d~~~~dr-----v~vl~-~G~i~~~~g 704 (723)
||||| ||++||+. ...|.+++++++.++|+||||.+ ++..+|| + |++|+ +|+|+ .|
T Consensus 260 ~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~d-----r~~~~~vi~l~k~G~iv--~g 331 (460)
T 2npi_A 260 RSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGP-----ELGNNNIFFIPKLDGVS--AV 331 (460)
T ss_dssp HSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHH-----HHCGGGEEEECCCTTCC--CC
T ss_pred cceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcc-----cccCCEEEEEeCCCcEE--EC
Confidence 99999 99999999 88888999998889999999988 8888984 8 99999 99996 58
Q ss_pred CHHHHH
Q 048654 705 TFEEYK 710 (723)
Q Consensus 705 ~~~~~~ 710 (723)
+++++.
T Consensus 332 ~~~~~~ 337 (460)
T 2npi_A 332 DDVYKR 337 (460)
T ss_dssp CHHHHH
T ss_pred CHHHHh
Confidence 887764
No 111
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.95 E-value=1.5e-26 Score=274.63 Aligned_cols=108 Identities=28% Similarity=0.433 Sum_probs=94.0
Q ss_pred HHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEE
Q 048654 298 AQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP---TLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLV 371 (723)
Q Consensus 298 ~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P---~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVI 371 (723)
.++.++|+.+||.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.++|+++ +.|||
T Consensus 823 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 902 (972)
T 2r6f_A 823 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 902 (972)
T ss_dssp HHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 456789999999753567999999999999999999999875 999999999999999999999988754 68999
Q ss_pred EEeCCHHHHHhhCCEEEEE------eCCEEEEecCChhhHHh
Q 048654 372 VVSHDRDFLNTVCTEIIHL------HDQKLHFYRGNFDDFES 407 (723)
Q Consensus 372 ivsHdl~~l~~iad~Ii~L------~~G~i~~~~g~~~~~~~ 407 (723)
+||||++++. +||+|++| ++|+|+ +.|+++++..
T Consensus 903 visHdl~~i~-~aDrIivL~p~gG~~~G~Iv-~~g~~~el~~ 942 (972)
T 2r6f_A 903 VIEHNLDVIK-TADYIIDLGPEGGDRGGQIV-AVGTPEEVAE 942 (972)
T ss_dssp EECCCHHHHT-TCSEEEEECSSSTTSCCSEE-EEESHHHHHT
T ss_pred EEcCCHHHHH-hCCEEEEEcCCCCCCCCEEE-EecCHHHHHh
Confidence 9999999985 79999999 689996 4588776643
No 112
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.94 E-value=5.9e-27 Score=259.74 Aligned_cols=77 Identities=21% Similarity=0.222 Sum_probs=71.9
Q ss_pred CChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEE----eC
Q 048654 321 FSGGWRMRISLARALFVQP--TLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHL----HD 392 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P--~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L----~~ 392 (723)
|||||||||+||++|+.+| +||||||||+|||+.++.+|.++|+++ +.|||+||||++++ .+||+|++| ++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l~k~~~~ 374 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKVEKQVED 374 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEEEEEEET
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEEEEeccC
Confidence 6999999999999999999 999999999999999999999999987 58999999999887 479999999 99
Q ss_pred CEEEEe
Q 048654 393 QKLHFY 398 (723)
Q Consensus 393 G~i~~~ 398 (723)
|+++..
T Consensus 375 G~~~~~ 380 (415)
T 4aby_A 375 GRTVSH 380 (415)
T ss_dssp TEEEEE
T ss_pred CceEEE
Confidence 998643
No 113
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.94 E-value=1.6e-26 Score=275.37 Aligned_cols=107 Identities=26% Similarity=0.392 Sum_probs=93.2
Q ss_pred HHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCC---CEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEE
Q 048654 298 AQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP---TLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLV 371 (723)
Q Consensus 298 ~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P---~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVI 371 (723)
.++.++|+.+||.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.++|+++ +.|||
T Consensus 841 ~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVI 920 (993)
T 2ygr_A 841 HRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVI 920 (993)
T ss_dssp HHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 456789999999653457899999999999999999999875 999999999999999999999988754 68999
Q ss_pred EEeCCHHHHHhhCCEEEEE------eCCEEEEecCChhhHH
Q 048654 372 VVSHDRDFLNTVCTEIIHL------HDQKLHFYRGNFDDFE 406 (723)
Q Consensus 372 ivsHdl~~l~~iad~Ii~L------~~G~i~~~~g~~~~~~ 406 (723)
+||||++++. +||+|++| ++|+++ +.|+++++.
T Consensus 921 visHdl~~i~-~aDrIivL~p~gg~~~G~Iv-~~G~~~el~ 959 (993)
T 2ygr_A 921 VIEHNLDVIK-TSDWIIDLGPEGGAGGGTVV-AQGTPEDVA 959 (993)
T ss_dssp EECCCHHHHT-TCSEEEEEESSSTTSCSEEE-EEECHHHHH
T ss_pred EEcCCHHHHH-hCCEEEEECCCcCCCCCEEE-EecCHHHHH
Confidence 9999999984 79999999 689986 458877654
No 114
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.94 E-value=1.9e-26 Score=255.54 Aligned_cols=76 Identities=21% Similarity=0.324 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHHccCC--CeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCcEEEEE-
Q 048654 620 LSGGQKARVVFTSISMSKP--HILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERSEIWVV- 694 (723)
Q Consensus 620 LSGGqkqRv~lAral~~~p--~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~drv~vl- 694 (723)
|||||||||+||++|+.+| +||||||||+|||+.+...|.++|+++. .+||+||||++++ .+| |++++|
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~-----d~i~~l~ 369 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARA-----HHHYKVE 369 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTC-----SEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhc-----CeEEEEE
Confidence 5999999999999999999 9999999999999999999999999985 7999999999887 568 499999
Q ss_pred ---ECCeEEe
Q 048654 695 ---ENGTVSR 701 (723)
Q Consensus 695 ---~~G~i~~ 701 (723)
++|+++.
T Consensus 370 k~~~~G~~~~ 379 (415)
T 4aby_A 370 KQVEDGRTVS 379 (415)
T ss_dssp EEEETTEEEE
T ss_pred EeccCCceEE
Confidence 9999863
No 115
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.92 E-value=6.9e-25 Score=239.58 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=75.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHc------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCC
Q 048654 315 GRPTKSFSGGWRMRISLARALF------VQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCT 385 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~------~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad 385 (723)
++++.+|||||||||+||+||+ .+|+||||||||++||+.++.++.++|+++ +.|||+||||+++ ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 4688899999999999999999 799999999999999999999999999865 5799999999998 56799
Q ss_pred EEEEEeCCEEE
Q 048654 386 EIIHLHDQKLH 396 (723)
Q Consensus 386 ~Ii~L~~G~i~ 396 (723)
+|++|++|+++
T Consensus 353 ~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 RKLRITGGVVV 363 (365)
T ss_dssp CEEEEETTEEC
T ss_pred EEEEEECCEEE
Confidence 99999999985
No 116
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.3e-28 Score=274.03 Aligned_cols=200 Identities=14% Similarity=0.105 Sum_probs=138.5
Q ss_pred ccceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcE-E-EEEeeeeecCCChHHHH
Q 048654 163 VKDITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI-D-VLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 163 ~~~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~-~-i~~~~q~~~~~~~~~~~ 240 (723)
.++|+++||++.|+ ++||++.+|++++|+||||||||||+|+|+|+..+. .| . |.+.+ ++.
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~--~G~~pI~vdg-~~~-------- 178 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF--NAYQPLYINL-DPQ-------- 178 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH--HCCCCEEEEC-CTT--------
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc--CCceeEEEcC-Ccc--------
Confidence 44688999999886 799999999999999999999999999999987554 34 4 44332 110
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
+.+.++.+.......... ..+.+++ .. ...........++..+++.+|+... .+ +.+
T Consensus 179 -------------~~i~~vpq~~~l~~~~~~---~tv~eni-~~---~~~~~~~~~~~~~~~ll~~~gl~~~-~~--~~~ 235 (460)
T 2npi_A 179 -------------QPIFTVPGCISATPISDI---LDAQLPT-WG---QSLTSGATLLHNKQPMVKNFGLERI-NE--NKD 235 (460)
T ss_dssp -------------SCSSSCSSCCEEEECCSC---CCTTCTT-CS---CBCBSSCCSSCCBCCEECCCCSSSG-GG--CHH
T ss_pred -------------CCeeeeccchhhcccccc---cchhhhh-cc---cccccCcchHHHHHHHHHHhCCCcc-cc--hhh
Confidence 001111110000000000 0000000 00 0000000011234556778888643 33 789
Q ss_pred CChHHHHHHHHHHH--HccCCCE----EEEeC-CCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHH------HHHhhCCE-
Q 048654 321 FSGGWRMRISLARA--LFVQPTL----LLLDE-PTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRD------FLNTVCTE- 386 (723)
Q Consensus 321 LSGGqrQRvaLArA--L~~~P~l----LLLDE-PT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~------~l~~iad~- 386 (723)
|||||||||+|||| |+.+|+| ||||| ||++||+. ...|.+++++++.|+|+|+||.+ ++..+||+
T Consensus 236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~ 314 (460)
T 2npi_A 236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPEL 314 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccc
Confidence 99999999999999 9999999 99999 99999999 88888888888999999999987 88899999
Q ss_pred ----EEEEe-CCEEEEecCChhhH
Q 048654 387 ----IIHLH-DQKLHFYRGNFDDF 405 (723)
Q Consensus 387 ----Ii~L~-~G~i~~~~g~~~~~ 405 (723)
|++|+ +|+++ .|+.+.+
T Consensus 315 ~~~~vi~l~k~G~iv--~g~~~~~ 336 (460)
T 2npi_A 315 GNNNIFFIPKLDGVS--AVDDVYK 336 (460)
T ss_dssp CGGGEEEECCCTTCC--CCCHHHH
T ss_pred cCCEEEEEeCCCcEE--ECCHHHH
Confidence 99999 99986 5666443
No 117
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.91 E-value=1.8e-26 Score=232.59 Aligned_cols=138 Identities=18% Similarity=0.210 Sum_probs=95.9
Q ss_pred cceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEEC--------CceeEEEEcccccccc-CccccHHH
Q 048654 511 FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS--------QKLRIGRYSQHFVDLL-TMEETPVS 581 (723)
Q Consensus 511 ~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~--------~~~~ig~~~q~~~~~~-~~~~~~~~ 581 (723)
.+|++| .+|++++|+||||||||||+++|+|+ +|++|+|... .+..++|++|...+.+ ........
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~ 88 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHD 88 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTHHHHH
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHHHHHH
Confidence 578885 89999999999999999999999999 9999998431 1224777777642222 11100000
Q ss_pred HHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHH
Q 048654 582 YLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADA 661 (723)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~ 661 (723)
...... ....+.++++. ++ ||||||+|||||+.+|+||||||||++ ++..+.++
T Consensus 89 ---~~~~~~----~~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~ 142 (208)
T 3b85_A 89 ---ALRDMV----EPEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMF 142 (208)
T ss_dssp ---HHTTTS----CTTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHH
T ss_pred ---HHHHhc----cHHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHH
Confidence 111100 12345566665 43 999999999999999999999999999 88889999
Q ss_pred HHHc--CceEEEEecCHHHHH
Q 048654 662 LDEF--TGGVVLVSHDSRLIS 680 (723)
Q Consensus 662 L~~~--~~tVIivSHD~~~~~ 680 (723)
|.++ +.||| ||||++++.
T Consensus 143 l~~l~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 143 LTRLGFGSKMV-VTGDITQVD 162 (208)
T ss_dssp HTTBCTTCEEE-EEEC-----
T ss_pred HHHhcCCCEEE-EECCHHHHh
Confidence 9887 35788 999999876
No 118
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=4.6e-25 Score=215.28 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=62.2
Q ss_pred hCCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH----------------HHHHHHHHHhh---c
Q 048654 306 GLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR----------------AVLWLEEYLCR---W 366 (723)
Q Consensus 306 ~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~----------------~~~~L~~~L~~---~ 366 (723)
..|+.... ......|||||||++|||||+.+|++|+|||||++||+. ....+.+.|++ .
T Consensus 71 ~~g~~~~~--~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~ 148 (171)
T 4gp7_A 71 QLGKLTVV--DATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE 148 (171)
T ss_dssp HTTCCEEE--ESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH
T ss_pred hCCCeEEE--ECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc
Confidence 44654322 234567999999999999999999999999999999999 55777877543 3
Q ss_pred CcEEEEEeCCHHHHHhh
Q 048654 367 KKTLVVVSHDRDFLNTV 383 (723)
Q Consensus 367 ~~TVIivsHdl~~l~~i 383 (723)
+.|+|+||||++++..+
T Consensus 149 g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 149 GFRYVYILNSPEEVEEV 165 (171)
T ss_dssp TCSEEEEECSHHHHHHE
T ss_pred CCcEEEEeCCHHHhhhh
Confidence 78999999999999863
No 119
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.90 E-value=1.9e-24 Score=236.12 Aligned_cols=80 Identities=25% Similarity=0.431 Sum_probs=73.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHc------cCCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCc
Q 048654 615 TPIAKLSGGQKARVVFTSISM------SKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDD 685 (723)
Q Consensus 615 ~~i~~LSGGqkqRv~lAral~------~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~ 685 (723)
+++.+|||||||||+||+||+ .+|+||||||||+|||+.+...+.+.|.++. .|||+||||+++ ...||
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d- 352 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD- 352 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS-
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC-
Confidence 567899999999999999999 7999999999999999999999999998873 699999999998 56674
Q ss_pred CCCcEEEEEECCeEE
Q 048654 686 EERSEIWVVENGTVS 700 (723)
Q Consensus 686 ~~~drv~vl~~G~i~ 700 (723)
+|++|++|+|+
T Consensus 353 ----~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 ----RKLRITGGVVV 363 (365)
T ss_dssp ----CEEEEETTEEC
T ss_pred ----EEEEEECCEEE
Confidence 89999999985
No 120
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.90 E-value=6.3e-25 Score=214.35 Aligned_cols=147 Identities=13% Similarity=0.110 Sum_probs=97.0
Q ss_pred ceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCc
Q 048654 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLS 594 (723)
Q Consensus 515 ~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (723)
||||+|++|++++|+||||||||||++++.+-. .........++++|...... +......
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~------~~~~~d~~~g~~~~~~~~~~-~~~~~~~------------- 60 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT------EVISSDFCRGLMSDDENDQT-VTGAAFD------------- 60 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG------GEEEHHHHHHHHCSSTTCGG-GHHHHHH-------------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC------eEEccHHHHHHhcCcccchh-hHHHHHH-------------
Confidence 689999999999999999999999999865321 11111111133333211100 0000000
Q ss_pred HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHH----------------HHHHH
Q 048654 595 KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ----------------SIDAL 658 (723)
Q Consensus 595 ~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~----------------s~~~l 658 (723)
............|...... ....+||||||||+|||+++.+|++|+|||||++||+. ....+
T Consensus 61 ~~~~~~~~~~~~g~~~~~~--~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l 138 (171)
T 4gp7_A 61 VLHYIVSKRLQLGKLTVVD--ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQM 138 (171)
T ss_dssp HHHHHHHHHHHTTCCEEEE--SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEE--CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHh
Confidence 0001111222345432222 23567999999999999999999999999999999999 55777
Q ss_pred HHHHHHc---CceEEEEecCHHHHHHhc
Q 048654 659 ADALDEF---TGGVVLVSHDSRLISRVC 683 (723)
Q Consensus 659 ~~~L~~~---~~tVIivSHD~~~~~~~~ 683 (723)
.+.|+++ +.|||+||||++++..++
T Consensus 139 ~~~l~~l~~~g~tvi~vtH~~~~~~~~~ 166 (171)
T 4gp7_A 139 KKSIKGLQREGFRYVYILNSPEEVEEVV 166 (171)
T ss_dssp HHHSTTHHHHTCSEEEEECSHHHHHHEE
T ss_pred hhhhhhHHhcCCcEEEEeCCHHHhhhhh
Confidence 8875543 569999999999998654
No 121
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.88 E-value=1.2e-23 Score=206.79 Aligned_cols=157 Identities=13% Similarity=0.108 Sum_probs=107.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC-cceEEE-----CCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHH
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLSPT-EGEVRR-----SQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEA 598 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~p~-~G~I~~-----~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (723)
+++|+||||||||||+++|+|++... .|.... ....++||++|.. +..++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~----~~~~~~------------------- 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT----EGKKKI------------------- 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET----TCCEEE-------------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC----cHHHHH-------------------
Confidence 68999999999999999999998522 232211 1123467776653 111111
Q ss_pred HHHHHHhCCCCC-CCCcCCCCCCCHHHHHHHHHHHH-----HccCCCeEEecc--CCCCCCHHHHHHHHHHHHHcCceEE
Q 048654 599 VRAKLGKFGLPS-HNHLTPIAKLSGGQKARVVFTSI-----SMSKPHILLLDE--PTNHLDMQSIDALADALDEFTGGVV 670 (723)
Q Consensus 599 ~~~~L~~~gl~~-~~~~~~i~~LSGGqkqRv~lAra-----l~~~p~lLlLDE--PT~~LD~~s~~~l~~~L~~~~~tVI 670 (723)
+..++... ....+++.+|||||||||+||++ ++.+|+|||||| ||++||+.....+.++|.+.+.++|
T Consensus 59 ----~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i 134 (178)
T 1ye8_A 59 ----FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVV 134 (178)
T ss_dssp ----EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEE
T ss_pred ----HHhhcCCccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEE
Confidence 00111111 12235567899999999999996 999999999999 9999999999999999988766788
Q ss_pred EEe---cCHHHHHHhcCcCCCcEEEEEECCeEEecC-CCHHHHHHHHHHHH
Q 048654 671 LVS---HDSRLISRVCDDEERSEIWVVENGTVSRFP-GTFEEYKEDLQREI 717 (723)
Q Consensus 671 ivS---HD~~~~~~~~d~~~~drv~vl~~G~i~~~~-g~~~~~~~~~~~~~ 717 (723)
++| ||.+++..+|+ + .+|+|..+. .+.+++.+++.+.+
T Consensus 135 ~~~H~~h~~~~~~~i~~-----r----~~~~i~~~~~~~r~~~~~~l~~~~ 176 (178)
T 1ye8_A 135 ATIPIRDVHPLVKEIRR-----L----PGAVLIELTPENRDVILEDILSLL 176 (178)
T ss_dssp EECCSSCCSHHHHHHHT-----C----TTCEEEECCTTTTTTHHHHHHHHS
T ss_pred EEEccCCCchHHHHHHh-----c----CCcEEEEecCcCHHHHHHHHHHHH
Confidence 888 59999999996 2 345554332 33455555555443
No 122
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.88 E-value=3.7e-22 Score=214.38 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=75.8
Q ss_pred cCCCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEE
Q 048654 314 QGRPTKSFSGGWRMRISLARALF----VQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEI 387 (723)
Q Consensus 314 ~~~~~~~LSGGqrQRvaLArAL~----~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~I 387 (723)
.+.++..|||||||||+||+||+ .+|+||||||||++||+..+.+|.++|+++ +.|||+|||+.+ +..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 35678899999999999999997 689999999999999999999999999876 569999999975 55689987
Q ss_pred --EEEeCCEEEEecCChh
Q 048654 388 --IHLHDQKLHFYRGNFD 403 (723)
Q Consensus 388 --i~L~~G~i~~~~g~~~ 403 (723)
++|.+|.........+
T Consensus 292 ~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 292 HGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEEESSSCEEEEECCC-
T ss_pred EEEEEeCCEEEEEEEEcc
Confidence 8888887765544443
No 123
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.87 E-value=2.7e-22 Score=215.46 Aligned_cols=89 Identities=22% Similarity=0.307 Sum_probs=72.7
Q ss_pred cCCCCCCCHHHHHHHHHHHHHc----cCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCC
Q 048654 614 LTPIAKLSGGQKARVVFTSISM----SKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEE 687 (723)
Q Consensus 614 ~~~i~~LSGGqkqRv~lAral~----~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~ 687 (723)
..++..|||||||||+||++|+ .+|+||||||||++||+.....|.++|.++. .+||+|||+.+ +..+||
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d--- 289 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAAD--- 289 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCS---
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCc---
Confidence 3567899999999999999997 6889999999999999999999999999883 58999999975 456785
Q ss_pred CcEE--EEEECCeEEecCCCHHH
Q 048654 688 RSEI--WVVENGTVSRFPGTFEE 708 (723)
Q Consensus 688 ~drv--~vl~~G~i~~~~g~~~~ 708 (723)
++ ++|.+|.........++
T Consensus 290 --~~~~v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 290 --LLHGVTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp --EEEEEEESSSCEEEEECCC--
T ss_pred --eEEEEEEeCCEEEEEEEEcch
Confidence 55 77888876544344443
No 124
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.87 E-value=8.7e-25 Score=220.34 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=93.4
Q ss_pred EeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHH
Q 048654 174 AARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLR 253 (723)
Q Consensus 174 ~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~ 253 (723)
+|+++.+|+|| ++|++++|+|||||||||||++|+|+ .|..|.+......... ... +
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~--~~~----------------~ 65 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPA--VEA----------------G 65 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECS--CCT----------------T
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCc--hhh----------------h
Confidence 36677899996 89999999999999999999999998 7666655221111000 000 0
Q ss_pred HHHHhhhcCcCCCCCCCCCchh-hHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHH
Q 048654 254 EEVASLQNSTSVDGEEDGDDAN-DAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLA 332 (723)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLA 332 (723)
..++++.+. +.+.. .... ..+..+... ....++.++++. |+ ||||||+||
T Consensus 66 ~~ig~v~q~--------~~enl~~~~~---~~~~~~~~~---~~~~~~~~~l~~-gl--------------Gq~qrv~lA 116 (208)
T 3b85_A 66 EKLGFLPGT--------LNEKIDPYLR---PLHDALRDM---VEPEVIPKLMEA-GI--------------VEVAPLAYM 116 (208)
T ss_dssp CCCCSSCC--------------CTTTH---HHHHHHTTT---SCTTHHHHHHHT-TS--------------EEEEEGGGG
T ss_pred cceEEecCC--------HHHHHHHHHH---HHHHHHHHh---ccHHHHHHHHHh-CC--------------chHHHHHHH
Confidence 001111110 00000 0000 001111100 012345555654 43 999999999
Q ss_pred HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 333 RALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 333 rAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
|||+.+|+||||||||++ ++.++.++|+++ +.||| ||||++++.. +..+++|.
T Consensus 117 raL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~----~~~~~~G~ 171 (208)
T 3b85_A 117 RGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL----PGGQKSGL 171 (208)
T ss_dssp TTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC----------------CC
T ss_pred HHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC----cCCCCCcH
Confidence 999999999999999999 888888888876 56888 9999987653 33455653
No 125
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.85 E-value=1.2e-20 Score=204.09 Aligned_cols=80 Identities=31% Similarity=0.463 Sum_probs=69.9
Q ss_pred CCCCCCCChHHHH------HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCC
Q 048654 315 GRPTKSFSGGWRM------RISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCT 385 (723)
Q Consensus 315 ~~~~~~LSGGqrQ------RvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad 385 (723)
++++.+||||||| |+++|++|+.+|+||||||||+|||+..+..|.++|.++ +.|||+||||.+ +..+||
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCC
Confidence 5788999999999 678888999999999999999999999999999998765 469999999966 567899
Q ss_pred EEEEEe--CCEE
Q 048654 386 EIIHLH--DQKL 395 (723)
Q Consensus 386 ~Ii~L~--~G~i 395 (723)
+|++|+ +|..
T Consensus 322 ~~~~l~~~~g~s 333 (339)
T 3qkt_A 322 HVIRISLENGSS 333 (339)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEecCCcc
Confidence 999986 4543
No 126
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.85 E-value=2.8e-22 Score=197.11 Aligned_cols=80 Identities=8% Similarity=-0.017 Sum_probs=71.3
Q ss_pred cCCCCCCCChHHHHHHHHHHH-----HccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCcEEEEEe---CCHHHHHhh
Q 048654 314 QGRPTKSFSGGWRMRISLARA-----LFVQPTLLLLDE--PTNHLDLRAVLWLEEYLCRWKKTLVVVS---HDRDFLNTV 383 (723)
Q Consensus 314 ~~~~~~~LSGGqrQRvaLArA-----L~~~P~lLLLDE--PT~~LD~~~~~~L~~~L~~~~~TVIivs---Hdl~~l~~i 383 (723)
.++++.+||||||||++||+| |+.+|+|||||| ||++||+....+|.++|.+.+.|+|+++ ||++++..+
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i 149 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEI 149 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHH
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHH
Confidence 467888999999999999996 999999999999 9999999999999999988777788888 599999999
Q ss_pred CCEEEEEeCCEEEE
Q 048654 384 CTEIIHLHDQKLHF 397 (723)
Q Consensus 384 ad~Ii~L~~G~i~~ 397 (723)
|++ .+|+++.
T Consensus 150 ~~r----~~~~i~~ 159 (178)
T 1ye8_A 150 RRL----PGAVLIE 159 (178)
T ss_dssp HTC----TTCEEEE
T ss_pred Hhc----CCcEEEE
Confidence 998 4556543
No 127
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.84 E-value=6.4e-24 Score=234.23 Aligned_cols=160 Identities=15% Similarity=0.126 Sum_probs=123.7
Q ss_pred cceeceEEEEecCc--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce--eEEEEccc
Q 048654 511 FKLSDVDVGIDMGT--------------------RVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL--RIGRYSQH 568 (723)
Q Consensus 511 ~~L~~isl~i~~Ge--------------------~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~--~ig~~~q~ 568 (723)
.+|++|||+|++|+ +++|+||||||||||+|+|+|+++|++|+|...+.. +.++++|.
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~ 116 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH 116 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc
Confidence 47999999999999 999999999999999999999999999999876532 12667775
Q ss_pred cc-cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHH--HHHHHHHHHHHcc---------
Q 048654 569 FV-DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGG--QKARVVFTSISMS--------- 636 (723)
Q Consensus 569 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGG--qkqRv~lAral~~--------- 636 (723)
.. ..+++.+++. ... ....+.++|+.+++.... ..+ . |||| |+||+.||++|+.
T Consensus 117 ~~~~~ltv~D~~g-----~~~------~~~~~~~~L~~~~L~~~~-~~~-~-lS~G~~~kqrv~la~aL~~~~~p~~lV~ 182 (413)
T 1tq4_A 117 PNIPNVVFWDLPG-----IGS------TNFPPDTYLEKMKFYEYD-FFI-I-ISATRFKKNDIDIAKAISMMKKEFYFVR 182 (413)
T ss_dssp SSCTTEEEEECCC-----GGG------SSCCHHHHHHHTTGGGCS-EEE-E-EESSCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred cccCCeeehHhhc-----ccc------hHHHHHHHHHHcCCCccC-CeE-E-eCCCCccHHHHHHHHHHHhcCCCeEEEE
Confidence 31 1233333321 000 012367789999986532 233 3 9999 9999999999999
Q ss_pred -CCCeEEeccCCCCCCHHHHHHHHHHHHHcC------------ceEEEEecCHHH--HHHhcC
Q 048654 637 -KPHILLLDEPTNHLDMQSIDALADALDEFT------------GGVVLVSHDSRL--ISRVCD 684 (723)
Q Consensus 637 -~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~------------~tVIivSHD~~~--~~~~~d 684 (723)
+|++|||||||+|||+.++..+.+.|+++. .+|+++||++.. +..+||
T Consensus 183 tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d 245 (413)
T 1tq4_A 183 TKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMD 245 (413)
T ss_dssp CCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHH
T ss_pred ecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHH
Confidence 999999999999999999988888876651 358889999887 888885
No 128
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.84 E-value=6.4e-20 Score=199.20 Aligned_cols=86 Identities=16% Similarity=0.077 Sum_probs=76.5
Q ss_pred CCCCC-CCChHHHHHHHHHHHHc---------cCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhC
Q 048654 315 GRPTK-SFSGGWRMRISLARALF---------VQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVC 384 (723)
Q Consensus 315 ~~~~~-~LSGGqrQRvaLArAL~---------~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~ia 384 (723)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..|.++|.++..|+|++||. +. +|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 46777 89999999999999999 8999999999999999999999999999877899999994 43 79
Q ss_pred CEEEEEeCCEEEEecCChhhH
Q 048654 385 TEIIHLHDQKLHFYRGNFDDF 405 (723)
Q Consensus 385 d~Ii~L~~G~i~~~~g~~~~~ 405 (723)
|++++|++|+++. .|+++++
T Consensus 335 ~~i~~l~~G~i~~-~g~~~~~ 354 (359)
T 2o5v_A 335 ALTLRAQAGRFTP-VADEEMQ 354 (359)
T ss_dssp SEEEEEETTEEEE-CCCTTTS
T ss_pred CEEEEEECCEEEe-cCCHHHH
Confidence 9999999999964 4666543
No 129
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.81 E-value=5.7e-24 Score=225.67 Aligned_cols=162 Identities=20% Similarity=0.207 Sum_probs=117.6
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEcccccc-cc
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVD-LL 573 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~-~~ 573 (723)
+|+++||+|.|+ ..+|++|||+|++|++++|+||||||||||+++|+|++ +|+|. ++++|...- ..
T Consensus 101 ~i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~-------~~v~q~~~lf~~ 167 (305)
T 2v9p_A 101 FFNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL-------SFANHKSHFWLA 167 (305)
T ss_dssp HHHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE-------CGGGTTSGGGGG
T ss_pred eEEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE-------EEecCccccccc
Confidence 478889999996 35899999999999999999999999999999999998 89984 345554210 01
Q ss_pred Cccc-cHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCH
Q 048654 574 TMEE-TPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDM 652 (723)
Q Consensus 574 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~ 652 (723)
++.+ +. .+.+.. ...+...+..+ |+.... ...|||||||| ||||+.+|+||| |++||+
T Consensus 168 ti~~~ni-----~~~~~~-----~~~~~~~i~~~-L~~gld---g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 168 SLADTRA-----ALVDDA-----THACWRYFDTY-LRNALD---GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp GGTTCSC-----EEEEEE-----CHHHHHHHHHT-TTGGGG---TCCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred cHHHHhh-----ccCccc-----cHHHHHHHHHH-hHccCC---ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 1111 10 111110 11345556654 433222 47899999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 653 QSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 653 ~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
.+...+.. +||++..+ .+| |+| +|++|+|+ ..|+++++
T Consensus 227 ~~~~~i~~-----------ltH~~~~~-~~a-----D~i-vl~~G~iv-~~g~~~el 264 (305)
T 2v9p_A 227 QAEDRYLY-----------LHSRVQTF-RFE-----QPC-TDESGEQP-FNITDADW 264 (305)
T ss_dssp TTCGGGGG-----------GTTTEEEE-ECC-----CCC-CCC---CC-CCCCHHHH
T ss_pred HHHHHHHH-----------HhCCHHHH-HhC-----CEE-EEeCCEEE-EeCCHHHH
Confidence 98877752 29998875 466 589 99999997 57999887
No 130
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.80 E-value=3.7e-24 Score=227.07 Aligned_cols=162 Identities=15% Similarity=0.065 Sum_probs=112.6
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEE-eeeeecCCChHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLL-VEQEVVGDDRSAIQAVV 243 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~-~~q~~~~~~~~~~~~~~ 243 (723)
.|+++||+|.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ .|.|.. +.|.......+
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~~~v~q~~~lf~~t------ 168 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVLSFANHKSHFWLAS------ 168 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEECGGGTTSGGGGGG------
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEEEEecCcccccccc------
Confidence 488999999998 78999999999999999999999999999999999985 344432 11211000000
Q ss_pred HhhHHHHHHHHHHHhhh-cCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 244 SAHEELVKLREEVASLQ-NSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 244 ~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
..+ +... . .. . . ..+.++++.+ +...+ + +..||
T Consensus 169 --------------i~~~ni~~------~-~~----------------~--~---~~~~~~i~~~-L~~gl-d--g~~LS 202 (305)
T 2v9p_A 169 --------------LADTRAAL------V-DD----------------A--T---HACWRYFDTY-LRNAL-D--GYPVS 202 (305)
T ss_dssp --------------GTTCSCEE------E-EE----------------E--C---HHHHHHHHHT-TTGGG-G--TCCEE
T ss_pred --------------HHHHhhcc------C-cc----------------c--c---HHHHHHHHHH-hHccC-C--ccCcC
Confidence 000 0000 0 00 0 0 0233445553 33222 2 67999
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCCh
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNF 402 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~~ 402 (723)
|||||| ||||+.+|+||| |++||+.+...|.. +||++..+ .+||+| +|++|+++ +.|+.
T Consensus 203 gGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~~~-~~aD~i-vl~~G~iv-~~g~~ 261 (305)
T 2v9p_A 203 IDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-----------LHSRVQTF-RFEQPC-TDESGEQP-FNITD 261 (305)
T ss_dssp CCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----------GTTTEEEE-ECCCCC-CCC---CC-CCCCH
T ss_pred HHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----------HhCCHHHH-HhCCEE-EEeCCEEE-EeCCH
Confidence 999999 999999999999 99999998877752 29999876 479999 99999996 56877
Q ss_pred hhH
Q 048654 403 DDF 405 (723)
Q Consensus 403 ~~~ 405 (723)
+++
T Consensus 262 ~el 264 (305)
T 2v9p_A 262 ADW 264 (305)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 131
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.80 E-value=3.6e-21 Score=204.66 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=116.8
Q ss_pred eceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------------eeEEEEccccccccCcc
Q 048654 514 SDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------------LRIGRYSQHFVDLLTME 576 (723)
Q Consensus 514 ~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------------~~ig~~~q~~~~~~~~~ 576 (723)
.++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..++|++|.... +...
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~-~~~~ 169 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK-AKAA 169 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--C-CCHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCc-cCHH
Confidence 4688899999999999999999999999999999999999987542 136777775320 1111
Q ss_pred ccHHHHHHh-hCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC--eEEeccCCCCCCHH
Q 048654 577 ETPVSYLLR-LHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH--ILLLDEPTNHLDMQ 653 (723)
Q Consensus 577 ~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~--lLlLDEPT~~LD~~ 653 (723)
.+....+.. .... . . ..+++.+|+.+.. .+++.+|| +||++|||+++.+|+ +|+|| ||+|||+.
T Consensus 170 ~~v~e~l~~~~~~~---~-d----~~lldt~gl~~~~-~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~ 236 (302)
T 3b9q_A 170 TVLSKAVKRGKEEG---Y-D----VVLCDTSGRLHTN-YSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML 236 (302)
T ss_dssp HHHHHHHHHHHHTT---C-S----EEEECCCCCSSCC-HHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGH
T ss_pred HHHHHHHHHHHHcC---C-c----chHHhcCCCCcch-hHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHH
Confidence 111111110 0000 0 0 1235667775433 35568899 999999999999999 99999 99999987
Q ss_pred HHHHHHHHHHHcCceEEEEec---------CHHHHHHhcCcCCCcEEEEEECCeE
Q 048654 654 SIDALADALDEFTGGVVLVSH---------DSRLISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 654 s~~~l~~~L~~~~~tVIivSH---------D~~~~~~~~d~~~~drv~vl~~G~i 699 (723)
+. +..+-...+.|+|++|| .+..+..++ ..|.++..|+.
T Consensus 237 ~~--~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~-----~pi~~i~~Ge~ 284 (302)
T 3b9q_A 237 PQ--AREFNEVVGITGLILTKLDGSARGGCVVSVVEELG-----IPVKFIGVGEA 284 (302)
T ss_dssp HH--HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHC-----CCEEEEECSSS
T ss_pred HH--HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHC-----CCEEEEeCCCC
Confidence 64 23333345779999999 566666666 48999999965
No 132
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.79 E-value=3e-19 Score=193.02 Aligned_cols=80 Identities=31% Similarity=0.520 Sum_probs=68.0
Q ss_pred cCCCCCCCHHHHH------HHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcC
Q 048654 614 LTPIAKLSGGQKA------RVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCD 684 (723)
Q Consensus 614 ~~~i~~LSGGqkq------Rv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d 684 (723)
.+++..||||||| ||++|++|+.+|++|||||||+|||+.++..+.++|.++. .+||+||||.++ ..+||
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHhCC
Confidence 3567899999999 6778888889999999999999999999999999998863 489999999764 56784
Q ss_pred cCCCcEEEEEE--CCeE
Q 048654 685 DEERSEIWVVE--NGTV 699 (723)
Q Consensus 685 ~~~~drv~vl~--~G~i 699 (723)
+|++|+ +|..
T Consensus 322 -----~~~~l~~~~g~s 333 (339)
T 3qkt_A 322 -----HVIRISLENGSS 333 (339)
T ss_dssp -----EEEEEEEETTEE
T ss_pred -----EEEEEEecCCcc
Confidence 888885 5543
No 133
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.79 E-value=2e-22 Score=222.28 Aligned_cols=173 Identities=14% Similarity=0.084 Sum_probs=118.2
Q ss_pred eeeeEeeeEEEeCCc--------------------EEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChH
Q 048654 178 KELLKSTSVRISHGK--------------------RYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237 (723)
Q Consensus 178 ~~vL~~isl~i~~Ge--------------------~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~ 237 (723)
+.+|++|||+|++|+ ++||+||||||||||+|+|+|+..|..|.+. +.+......
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~--~~g~~~t~~--- 110 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAK--TGVVEVTME--- 110 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCC--CCC----CC---
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEE--ECCeeccee---
Confidence 568999999999999 9999999999999999999998776555432 211111000
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCC
Q 048654 238 AIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRP 317 (723)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 317 (723)
.++.+.... ....+.+.. .++. ...++.++|+.+++... +..
T Consensus 111 -------------------~~v~q~~~~-------~~ltv~D~~--------g~~~--~~~~~~~~L~~~~L~~~--~~~ 152 (413)
T 1tq4_A 111 -------------------RHPYKHPNI-------PNVVFWDLP--------GIGS--TNFPPDTYLEKMKFYEY--DFF 152 (413)
T ss_dssp -------------------CEEEECSSC-------TTEEEEECC--------CGGG--SSCCHHHHHHHTTGGGC--SEE
T ss_pred -------------------EEecccccc-------CCeeehHhh--------cccc--hHHHHHHHHHHcCCCcc--CCe
Confidence 011110000 000000000 0000 12346778898988532 233
Q ss_pred CCCCChH--HHHHHHHHHHHcc----------CCCEEEEeCCCCCCCHHHHHHHHHHHhhc------------CcEEEEE
Q 048654 318 TKSFSGG--WRMRISLARALFV----------QPTLLLLDEPTNHLDLRAVLWLEEYLCRW------------KKTLVVV 373 (723)
Q Consensus 318 ~~~LSGG--qrQRvaLArAL~~----------~P~lLLLDEPT~~LD~~~~~~L~~~L~~~------------~~TVIiv 373 (723)
+. |||| |+||++||+||+. +|++|||||||++||+.++..+.+.|+++ ..+|+++
T Consensus 153 ~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliS 231 (413)
T 1tq4_A 153 II-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLS 231 (413)
T ss_dssp EE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECC
T ss_pred EE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 34 9999 9999999999999 99999999999999998888777766543 1478899
Q ss_pred eCCHHH--HHhhCCEEE-EEeCCE
Q 048654 374 SHDRDF--LNTVCTEII-HLHDQK 394 (723)
Q Consensus 374 sHdl~~--l~~iad~Ii-~L~~G~ 394 (723)
||++.. +..+||+|. .|..|.
T Consensus 232 sh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 232 NKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp TTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred cCcCCccCHHHHHHHHHHhCccch
Confidence 999987 889999885 555443
No 134
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.78 E-value=4e-20 Score=211.36 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=109.9
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHhhhcCcC
Q 048654 185 SVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTS 264 (723)
Q Consensus 185 sl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 264 (723)
+..|.+|++++|+|+||||||||+++|+|...+. +.--+++..++. .. . +.....
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~ee~----~~---~----------l~~~~~------- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYEES----RA---Q----------LLRNAY------- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESSSC----HH---H----------HHHHHH-------
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEeCC----HH---H----------HHHHHH-------
Confidence 4489999999999999999999999999876542 321233333221 10 0 000000
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEE
Q 048654 265 VDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLL 344 (723)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLL 344 (723)
.++.. +.+ +..+|+. ...+.++.+|||||+||+++|+++..+|++|||
T Consensus 330 -------------------------~~g~~-----~~~-~~~~g~~-~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llil 377 (525)
T 1tf7_A 330 -------------------------SWGMD-----FEE-MERQNLL-KIVCAYPESAGLEDHLQIIKSEINDFKPARIAI 377 (525)
T ss_dssp -------------------------TTSCC-----HHH-HHHTTSE-EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred -------------------------HcCCC-----HHH-HHhCCCE-EEEEeccccCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 00000 011 2234543 334677889999999999999999999999999
Q ss_pred eCCCCCCCHH-----HHHHHHHHHh---hcCcEEEEEeCCH----------HHHHhhCCEEEEEeCCE
Q 048654 345 DEPTNHLDLR-----AVLWLEEYLC---RWKKTLVVVSHDR----------DFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 345 DEPT~~LD~~-----~~~~L~~~L~---~~~~TVIivsHdl----------~~l~~iad~Ii~L~~G~ 394 (723)
| ||++||+. .+..+.++++ +.+.|||+|+|+. .++..+||+|++|++|+
T Consensus 378 D-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 378 D-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp E-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred c-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 9 99999998 7777666654 4578999999999 88889999999999886
No 135
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.77 E-value=1.1e-18 Score=189.44 Aligned_cols=85 Identities=19% Similarity=0.130 Sum_probs=75.0
Q ss_pred CCCC-CCCHHHHHHHHHHHHHc---------cCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcC
Q 048654 615 TPIA-KLSGGQKARVVFTSISM---------SKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCD 684 (723)
Q Consensus 615 ~~i~-~LSGGqkqRv~lAral~---------~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d 684 (723)
+++. .|||||||||+||++|+ .+|+||||||||++||+..+..|.+.|.++..|||++||+ +. +|
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~- 334 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA- 334 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC-
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC-
Confidence 4566 79999999999999999 8999999999999999999999999999988889999995 33 66
Q ss_pred cCCCcEEEEEECCeEEecCCCHHHH
Q 048654 685 DEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 685 ~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
+++++|++|+|+. .|+++++
T Consensus 335 ----~~i~~l~~G~i~~-~g~~~~~ 354 (359)
T 2o5v_A 335 ----ALTLRAQAGRFTP-VADEEMQ 354 (359)
T ss_dssp ----SEEEEEETTEEEE-CCCTTTS
T ss_pred ----CEEEEEECCEEEe-cCCHHHH
Confidence 5999999999974 5776653
No 136
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.77 E-value=5.2e-22 Score=212.10 Aligned_cols=164 Identities=13% Similarity=0.076 Sum_probs=119.0
Q ss_pred eEEEEEEEEEcCCCcccceeceEEE-----------------------EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCc
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVG-----------------------IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE 551 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~-----------------------i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~ 551 (723)
.|++++|++.|. +++++++|. +.+|+++||+||||||||||+++|+|+++|+.
T Consensus 43 ~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~ 118 (312)
T 3aez_A 43 QIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD 118 (312)
T ss_dssp CCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred eEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence 588899999994 366676664 78999999999999999999999999999987
Q ss_pred ceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCC---cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHH
Q 048654 552 GEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGL---SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARV 628 (723)
Q Consensus 552 G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv 628 (723)
|. ..+++++|+... ...+..... .... ..+. ...+.+.++|..++ .+.. ..++..|||||+|||
T Consensus 119 G~------~~v~~v~qd~~~---~~~t~~e~~-~~~~-~~g~~~~~d~~~~~~~L~~l~-~~~~-~~~~~~lS~G~~qRv 185 (312)
T 3aez_A 119 HH------PRVDLVTTDGFL---YPNAELQRR-NLMH-RKGFPESYNRRALMRFVTSVK-SGSD-YACAPVYSHLHYDII 185 (312)
T ss_dssp TC------CCEEEEEGGGGB---CCHHHHHHT-TCTT-CTTSGGGBCHHHHHHHHHHHH-TTCS-CEEEEEEETTTTEEE
T ss_pred CC------CeEEEEecCccC---CcccHHHHH-HHHH-hcCCChHHHHHHHHHHHHHhC-CCcc-cCCcccCChhhhhhh
Confidence 64 458899986431 111222221 1111 0111 12356777888887 4333 245679999999999
Q ss_pred HHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHH
Q 048654 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLIS 680 (723)
Q Consensus 629 ~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~ 680 (723)
++|++++.+|+|||||||+..+|+.. ..+.++-..+|+|+|+.+.+.
T Consensus 186 ~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~ 232 (312)
T 3aez_A 186 PGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIE 232 (312)
T ss_dssp EEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHH
T ss_pred hhHHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHH
Confidence 99999999999999999999998522 123344346789999987754
No 137
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.77 E-value=2.1e-20 Score=201.32 Aligned_cols=130 Identities=17% Similarity=0.240 Sum_probs=99.7
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCC
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQE 591 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 591 (723)
+++++||.|.+|++++|+||||||||||+++|+|+++|++|.|.+++...+ .... ....
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~-----------~~~~---------~~~~- 218 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI-----------VFKH---------HKNY- 218 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCC-----------CCSS---------CSSE-
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecc-----------cccc---------chhE-
Confidence 789999999999999999999999999999999999999999988764210 0000 0000
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc--C-ce
Q 048654 592 GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF--T-GG 668 (723)
Q Consensus 592 ~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~--~-~t 668 (723)
+++- .. |||+||++||+||..+|++|||||||+. + +.++|+.+ + .|
T Consensus 219 --------------i~~~--------~g--gg~~~r~~la~aL~~~p~ilildE~~~~---e----~~~~l~~~~~g~~t 267 (330)
T 2pt7_A 219 --------------TQLF--------FG--GNITSADCLKSCLRMRPDRIILGELRSS---E----AYDFYNVLCSGHKG 267 (330)
T ss_dssp --------------EEEE--------CB--TTBCHHHHHHHHTTSCCSEEEECCCCST---H----HHHHHHHHHTTCCC
T ss_pred --------------EEEE--------eC--CChhHHHHHHHHhhhCCCEEEEcCCChH---H----HHHHHHHHhcCCCE
Confidence 0000 00 8999999999999999999999999982 2 33444443 3 37
Q ss_pred EEEEecCHHHHHHhcCcCCCcEEEEEECCeE
Q 048654 669 VVLVSHDSRLISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 669 VIivSHD~~~~~~~~d~~~~drv~vl~~G~i 699 (723)
+|+++|+.+ +...| ||+++|.+|..
T Consensus 268 vi~t~H~~~-~~~~~-----dri~~l~~g~~ 292 (330)
T 2pt7_A 268 TLTTLHAGS-SEEAF-----IRLANMSSSNS 292 (330)
T ss_dssp EEEEEECSS-HHHHH-----HHHHHHHHTSG
T ss_pred EEEEEcccH-HHHHh-----hhheehhcCCc
Confidence 999999999 66778 48999988864
No 138
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.77 E-value=3.1e-20 Score=201.41 Aligned_cols=165 Identities=16% Similarity=0.151 Sum_probs=116.6
Q ss_pred eceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------------eeEEEEccccccccCcc
Q 048654 514 SDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------------LRIGRYSQHFVDLLTME 576 (723)
Q Consensus 514 ~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------------~~ig~~~q~~~~~~~~~ 576 (723)
..+||++.+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+++++|.... +...
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~-~~p~ 226 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK-AKAA 226 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS-CCHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc-cChh
Confidence 3578889999999999999999999999999999999999987542 136777775320 1111
Q ss_pred ccHHHHHHh-hCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC--eEEeccCCCCCCHH
Q 048654 577 ETPVSYLLR-LHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH--ILLLDEPTNHLDMQ 653 (723)
Q Consensus 577 ~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~--lLlLDEPT~~LD~~ 653 (723)
.+....+.. .... . . ..+++.+|+.+.. .+.+.+|| +||++|||+++.+|+ +|||| ||+|||+.
T Consensus 227 ~tv~e~l~~~~~~~---~-d----~~lldt~Gl~~~~-~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~ 293 (359)
T 2og2_A 227 TVLSKAVKRGKEEG---Y-D----VVLCDTSGRLHTN-YSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNML 293 (359)
T ss_dssp HHHHHHHHHHHHTT---C-S----EEEEECCCCSSCC-HHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGH
T ss_pred hhHHHHHHHHHhCC---C-H----HHHHHhcCCChhh-hhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHH
Confidence 111111110 0000 0 0 1235567775433 35567899 999999999999999 99999 99999987
Q ss_pred HHHHHHHHHHHcCceEEEEec---------CHHHHHHhcCcCCCcEEEEEECCeE
Q 048654 654 SIDALADALDEFTGGVVLVSH---------DSRLISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 654 s~~~l~~~L~~~~~tVIivSH---------D~~~~~~~~d~~~~drv~vl~~G~i 699 (723)
+.. ..+-...+.|+|++|| .+..+..++ ..|+++..|+.
T Consensus 294 ~~~--~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~-----~pI~~ig~Ge~ 341 (359)
T 2og2_A 294 PQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELG-----IPVKFIGVGEA 341 (359)
T ss_dssp HHH--HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHC-----CCEEEEECSSS
T ss_pred HHH--HHHHHhcCCeEEEEecCcccccccHHHHHHHHhC-----CCEEEEeCCCC
Confidence 653 2333345779999999 466676666 48999999965
No 139
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.77 E-value=7.1e-22 Score=200.37 Aligned_cols=161 Identities=13% Similarity=0.104 Sum_probs=99.2
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------eeEEEEccccccc--cC-ccc
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------LRIGRYSQHFVDL--LT-MEE 577 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------~~ig~~~q~~~~~--~~-~~~ 577 (723)
-|+||||+|.+|++++|+||||||||||+++|+|++ | |.|.+... ..++|++|..... +. ..+
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 88 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNED 88 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTC
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccc
Confidence 589999999999999999999999999999999999 6 98887211 1345555542100 00 000
Q ss_pred cHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHH-----HHHHccCCCeEEeccCCCCCCH
Q 048654 578 TPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVF-----TSISMSKPHILLLDEPTNHLDM 652 (723)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~l-----Aral~~~p~lLlLDEPT~~LD~ 652 (723)
. +.+ ..+.....+. ....+.++++...+. .. . ..|||||+||++| +++++.+|++++|||||+++|.
T Consensus 89 ~-l~~-~~~~~~~~g~-~~~~i~~~l~~~~~~-il---~-~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~ 160 (218)
T 1z6g_A 89 F-LEY-DNYANNFYGT-LKSEYDKAKEQNKIC-LF---E-MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNT 160 (218)
T ss_dssp E-EEE-EEETTEEEEE-EHHHHHHHHHTTCEE-EE---E-ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCC
T ss_pred h-hhh-hhcccccCCC-cHHHHHHHHhCCCcE-EE---E-ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCC
Confidence 0 000 0000001111 123466677654431 11 1 4789999999999 8999999999999999999999
Q ss_pred HHHHHHHHHHHHc----------CceEEEEecCHHHHHHhc
Q 048654 653 QSIDALADALDEF----------TGGVVLVSHDSRLISRVC 683 (723)
Q Consensus 653 ~s~~~l~~~L~~~----------~~tVIivSHD~~~~~~~~ 683 (723)
.+...+.+.|... ....|+|+||++.+...+
T Consensus 161 ~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~ 201 (218)
T 1z6g_A 161 ENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQL 201 (218)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHH
Confidence 8877777776543 235677777777766655
No 140
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.76 E-value=4.6e-22 Score=199.77 Aligned_cols=180 Identities=12% Similarity=0.038 Sum_probs=94.7
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHH
Q 048654 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA 257 (723)
Q Consensus 178 ~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 257 (723)
.++++| .+|++|++++|+||||||||||+++|+|+.... .+.+..............+. ++.+.+. +...+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i--~~~~~~~~~~~~~~~~~~i~-~~~q~~~---~~~~~~ 80 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNL--HFSVSATTRAPRPGEVDGVD-YHFIDPT---RFQQLI 80 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTC--EECCCEESSCCCTTCCBTTT-BEECCHH---HHHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCce--EEcccccccCCcccccCCCe-eEecCHH---HHHHHH
Confidence 457777 799999999999999999999999999986311 11110000000000000000 0001111 111111
Q ss_pred hhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHH------HHhCCCCccccCCCCCCCChHHHHHHHH
Q 048654 258 SLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKI------LAGLGFTKEMQGRPTKSFSGGWRMRISL 331 (723)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~------L~~lgl~~~~~~~~~~~LSGGqrQRvaL 331 (723)
..++.... .....++ .+.........+++.+. ++.+|+. ...++++..||
T Consensus 81 ~~~~l~~~---------~~~~~n~-----~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~lS--------- 136 (207)
T 1znw_A 81 DQGELLEW---------AEIHGGL-----HRSGTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTMPEAVT--------- 136 (207)
T ss_dssp HTTCEEEE---------EEEGGGT-----EEEEEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHCTTSEE---------
T ss_pred hcCCceee---------hhhcCch-----hhcCCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhcCCcEE---------
Confidence 11110000 0000000 00001111223334443 4444553 23356677787
Q ss_pred HHHHccCCCEEEEeCCCCCC----CHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEEEEe
Q 048654 332 ARALFVQPTLLLLDEPTNHL----DLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 332 ArAL~~~P~lLLLDEPT~~L----D~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii~L~ 391 (723)
+|+.+|++++|||||++| |+..+..|.++++++ +.|||+||||++++..+||+|++|.
T Consensus 137 --~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 137 --VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp --EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred --EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999999999999998 777888888777654 5799999999999999999999985
No 141
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.76 E-value=4.2e-22 Score=200.06 Aligned_cols=165 Identities=15% Similarity=0.062 Sum_probs=94.8
Q ss_pred cceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC-------ceeEEEEcccccc--ccCccccHHH
Q 048654 511 FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ-------KLRIGRYSQHFVD--LLTMEETPVS 581 (723)
Q Consensus 511 ~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~-------~~~ig~~~q~~~~--~~~~~~~~~~ 581 (723)
+++.| .+|.+|++++|+||||||||||+++|+|+++...+.+.... ...++|++|.... .+++.++...
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~ 87 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLE 87 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCcee
Confidence 46777 68999999999999999999999999999863322221110 1236677775311 1111111000
Q ss_pred HHHhhCC--CCCCCcH---HHHHHHH------HHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCC
Q 048654 582 YLLRLHP--DQEGLSK---QEAVRAK------LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHL 650 (723)
Q Consensus 582 ~~~~~~~--~~~~~~~---~~~~~~~------L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~L 650 (723)
+ ...+. ...+... .+.+.+. ++.+|+.... .+.+..|| +|+.+|++++|||||++|
T Consensus 88 ~-~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~lS-----------~l~~~p~~~~LDep~~~l 154 (207)
T 1znw_A 88 W-AEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIK-KTMPEAVT-----------VFLAPPSWQDLQARLIGR 154 (207)
T ss_dssp E-EEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHH-HHCTTSEE-----------EEEECSCHHHHHHHHHTT
T ss_pred e-hhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHH-HhcCCcEE-----------EEEECCCHHHHHHHHHhc
Confidence 0 00000 0011111 1122222 2333332211 22345566 889999999999999998
Q ss_pred ----CHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEE
Q 048654 651 ----DMQSIDALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVE 695 (723)
Q Consensus 651 ----D~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~ 695 (723)
|+..+..+.+++.++ +.|||+||||++++..+|| +|++|.
T Consensus 155 ~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d-----~i~~l~ 202 (207)
T 1znw_A 155 GTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELV-----SLLVGT 202 (207)
T ss_dssp SCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHH-----HHHC--
T ss_pred CCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHH-----HHHHhc
Confidence 778888888888776 3589999999999999995 888874
No 142
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.76 E-value=2.9e-19 Score=217.09 Aligned_cols=165 Identities=19% Similarity=0.251 Sum_probs=113.3
Q ss_pred CCeEEEEE-----EEEEcCCCcccceeceEEEEec-------CcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce
Q 048654 493 PPLLQLIE-----VSFSYPNREDFKLSDVDVGIDM-------GTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL 560 (723)
Q Consensus 493 ~~~l~~~~-----ls~~y~~~~~~~L~~isl~i~~-------Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~ 560 (723)
.++|+++| |++.|++. .++++||+|++.+ |++++|+||||||||||||+| |++.+. .
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~---------a 816 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM---------A 816 (1022)
T ss_dssp CCCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------H
T ss_pred CceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------h
Confidence 46899999 99999432 4689999999987 999999999999999999999 988752 1
Q ss_pred eEE-EEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC
Q 048654 561 RIG-RYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH 639 (723)
Q Consensus 561 ~ig-~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~ 639 (723)
++| |++|... .+++.+++ +.++|+..... ...+++|+++++ +++|++++.+|.
T Consensus 817 qiG~~Vpq~~~-~l~v~d~I-----------------------~~rig~~d~~~-~~~stf~~em~~-~a~al~la~~~s 870 (1022)
T 2o8b_B 817 QMGCYVPAEVC-RLTPIDRV-----------------------FTRLGASDRIM-SGESTFFVELSE-TASILMHATAHS 870 (1022)
T ss_dssp TTTCCEESSEE-EECCCSBE-----------------------EEECC----------CHHHHHHHH-HHHHHHHCCTTC
T ss_pred heeEEeccCcC-CCCHHHHH-----------------------HHHcCCHHHHh-hchhhhHHHHHH-HHHHHHhCCCCc
Confidence 344 7777542 22222221 11233322221 234678888775 999999999999
Q ss_pred eEEeccCCCCCCHHHH-HHHHHHHHHc----CceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEE
Q 048654 640 ILLLDEPTNHLDMQSI-DALADALDEF----TGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVS 700 (723)
Q Consensus 640 lLlLDEPT~~LD~~s~-~~l~~~L~~~----~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~ 700 (723)
||||||||+|+|+... ..+..+|..+ +.+||++|||.+++..+|| +++++ +|++.
T Consensus 871 LlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d-----~~~v~-~g~~~ 930 (1022)
T 2o8b_B 871 LVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQ-----NVAVR-LGHMA 930 (1022)
T ss_dssp EEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSS-----CSSEE-EEEEE
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCC-----cceee-cCeEE
Confidence 9999999999998874 3344555443 5689999999999998885 56665 46665
No 143
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.76 E-value=1.1e-18 Score=184.62 Aligned_cols=181 Identities=16% Similarity=0.107 Sum_probs=111.4
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHH-
Q 048654 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEV- 256 (723)
Q Consensus 178 ~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~- 256 (723)
.++|+++++.|++|++++|+||||||||||+++|+|...+..| ..+.+++.+.. ... +...+
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~e~~---~~~-------------~~~r~~ 84 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAMLEES---VEE-------------TAEDLI 84 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEESSSC---HHH-------------HHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeCcCC---HHH-------------HHHHHH
Confidence 4579999999999999999999999999999999987654322 14555554321 110 01111
Q ss_pred HhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH-HHHHHHHHHH
Q 048654 257 ASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW-RMRISLARAL 335 (723)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq-rQRvaLArAL 335 (723)
...++... .....+.. .. +........+..+|+..++. . ...+..+|.++ +||+. |+++
T Consensus 85 ~~~~~~~~-----------~~~~~l~~--~~---~~~~~~~~~~~~~l~~~~l~--i-~~~~~~~~~~~l~~~~~-a~~~ 144 (296)
T 1cr0_A 85 GLHNRVRL-----------RQSDSLKR--EI---IENGKFDQWFDELFGNDTFH--L-YDSFAEAETDRLLAKLA-YMRS 144 (296)
T ss_dssp HHHTTCCG-----------GGCHHHHH--HH---HHHTHHHHHHHHHHSSSCEE--E-ECCCCSCCHHHHHHHHH-HHHH
T ss_pred HHHcCCCh-----------hhcccccc--CC---CCHHHHHHHHHHHhccCCEE--E-ECCCCCCCHHHHHHHHH-HHHH
Confidence 11111100 00000100 00 11122233445555444442 2 23346789999 66666 9999
Q ss_pred ccCCCEEEEeCCCC---C---CCH-HHHHHHHHHHh----hcCcEEEEEeCCH--H--------------------HHHh
Q 048654 336 FVQPTLLLLDEPTN---H---LDL-RAVLWLEEYLC----RWKKTLVVVSHDR--D--------------------FLNT 382 (723)
Q Consensus 336 ~~~P~lLLLDEPT~---~---LD~-~~~~~L~~~L~----~~~~TVIivsHdl--~--------------------~l~~ 382 (723)
..+|++|||||||+ + +|. ..+..+.+.|+ +.+.|||++||+. + .+..
T Consensus 145 ~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~ 224 (296)
T 1cr0_A 145 GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQ 224 (296)
T ss_dssp TTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHH
T ss_pred hcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHh
Confidence 99999999999999 4 455 55566666664 3478999999995 5 7888
Q ss_pred hCCEEEEEeCCEE
Q 048654 383 VCTEIIHLHDQKL 395 (723)
Q Consensus 383 iad~Ii~L~~G~i 395 (723)
+||+|++|++|+.
T Consensus 225 ~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 225 LSDTIIALERNQQ 237 (296)
T ss_dssp HCSEEEEEEEC--
T ss_pred hCcEEEEEecCcc
Confidence 9999999998864
No 144
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.76 E-value=1.9e-20 Score=208.65 Aligned_cols=173 Identities=13% Similarity=0.141 Sum_probs=125.8
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-------------
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK------------- 559 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~------------- 559 (723)
+++++++++++.|+.. ..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.+.
T Consensus 129 ~~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CCTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CCceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 3568899999999732 3589999 999999999999999999999999999999999999987664
Q ss_pred ------eeEEEEcccccc---ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHH
Q 048654 560 ------LRIGRYSQHFVD---LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVF 630 (723)
Q Consensus 560 ------~~ig~~~q~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~l 630 (723)
..+++++|.... .+++.++.. ...+++...+-.-......+..||+|| |||+|
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~-----------------~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYAT-----------------RIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIAL 268 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHH-----------------HHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHH-----------------HHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHH
Confidence 136777774111 011111100 001111111100000011256899999 99999
Q ss_pred HHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC------c------eEEEEecCHHHHHHhcCcCCCcEEEEEECCe
Q 048654 631 TSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT------G------GVVLVSHDSRLISRVCDDEERSEIWVVENGT 698 (723)
Q Consensus 631 Aral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~------~------tVIivSHD~~~~~~~~d~~~~drv~vl~~G~ 698 (723)
| +.+|++ |+|||+.....+.++|.++. + ||+++|||++ ..+| |++++|.+|+
T Consensus 269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~ia-----d~v~~l~dG~ 332 (438)
T 2dpy_A 269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIA-----DSARAILDGH 332 (438)
T ss_dssp H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHH-----HHHHHHSSEE
T ss_pred H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhh-----ceEEEEeCcE
Confidence 9 888888 99999999999999998762 3 7999999998 5677 4899999999
Q ss_pred EEe
Q 048654 699 VSR 701 (723)
Q Consensus 699 i~~ 701 (723)
|+.
T Consensus 333 Ivl 335 (438)
T 2dpy_A 333 IVL 335 (438)
T ss_dssp EEE
T ss_pred EEE
Confidence 863
No 145
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.75 E-value=2.2e-18 Score=164.06 Aligned_cols=80 Identities=33% Similarity=0.451 Sum_probs=71.7
Q ss_pred CCCCCCCChHHHHHHHHH------HHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCC
Q 048654 315 GRPTKSFSGGWRMRISLA------RALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCT 385 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLA------rAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad 385 (723)
++++.+|||||||||+|| |||+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++ +..+||
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d 130 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD 130 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCC
Confidence 578899999999999876 8999999999999999999999999999999875 479999999994 667999
Q ss_pred EEEEE--eCCEE
Q 048654 386 EIIHL--HDQKL 395 (723)
Q Consensus 386 ~Ii~L--~~G~i 395 (723)
+|++| ++|..
T Consensus 131 ~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 HVIRISLENGSS 142 (148)
T ss_dssp EEEEEEEETTEE
T ss_pred EEEEEEcCCCeE
Confidence 99999 46644
No 146
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.75 E-value=5.5e-20 Score=182.46 Aligned_cols=160 Identities=18% Similarity=0.220 Sum_probs=109.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC---------ceeEEEEccccccccCccccHHHHHHhhCCCCCCC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ---------KLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGL 593 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~---------~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (723)
|++++|+||||||||||+++|+|+++ ++| |.+.+ ..++||++|.+.... .+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g~~---~~--------------- 60 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSGTR---GP--------------- 60 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTSCE---EE---------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEecccce---eh---------------
Confidence 78999999999999999999999998 888 75533 224666666541110 00
Q ss_pred cHHHHHHHHHHhCCCCCC------CCcCCCCCCCHHHHHHH-HHHH---HHccCCCeEEecc--CCCCCCHHHHHHHHHH
Q 048654 594 SKQEAVRAKLGKFGLPSH------NHLTPIAKLSGGQKARV-VFTS---ISMSKPHILLLDE--PTNHLDMQSIDALADA 661 (723)
Q Consensus 594 ~~~~~~~~~L~~~gl~~~------~~~~~i~~LSGGqkqRv-~lAr---al~~~p~lLlLDE--PT~~LD~~s~~~l~~~ 661 (723)
|..+++... ...++...+|+|||+++ +|++ |++.+|+|||||| ||+++|....+.|.++
T Consensus 61 ---------l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 61 ---------LSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp ---------EEECCCCCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ---------hhcccccCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 111111110 11233457999999988 4444 5789999999999 9999999999999999
Q ss_pred HHHcCceEE---EEecCH--HHHHHhcCcCCCcEEEEEECCeEEecC-CCHHHHHHHHHHHHHhh
Q 048654 662 LDEFTGGVV---LVSHDS--RLISRVCDDEERSEIWVVENGTVSRFP-GTFEEYKEDLQREIKAE 720 (723)
Q Consensus 662 L~~~~~tVI---ivSHD~--~~~~~~~d~~~~drv~vl~~G~i~~~~-g~~~~~~~~~~~~~~~~ 720 (723)
|..+...|| .||||. .|+.++|+ +.+|+|.... .+.+.+.+++++.+...
T Consensus 132 l~~~~~~ilgti~vsh~~~~~~vd~i~~---------~~~~~i~~~~~~nr~~~~~~i~~~~~~~ 187 (189)
T 2i3b_A 132 LSTPGTIILGTIPVPKGKPLALVEEIRN---------RKDVKVFNVTKENRNHLLPDIVTCVQSS 187 (189)
T ss_dssp HHCSSCCEEEECCCCCSSCCTTHHHHHT---------TCCSEEEECCSSSGGGHHHHHHHHHTTS
T ss_pred HhCCCcEEEEEeecCCCCchHHHHHHee---------cCCcEEEEeChHhHHHHHHHHHHHHHHh
Confidence 987654443 456987 78887775 3566665432 35566666666666543
No 147
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.75 E-value=3.9e-19 Score=215.92 Aligned_cols=165 Identities=14% Similarity=0.052 Sum_probs=108.7
Q ss_pred ccceEEEe-----EEEEe-CCeeeeEeeeEEEeC-------CcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeee
Q 048654 163 VKDITIDN-----FSVAA-RGKELLKSTSVRISH-------GKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQ 229 (723)
Q Consensus 163 ~~~I~l~n-----ls~~y-~~~~vL~~isl~i~~-------Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q 229 (723)
..+|+++| |++.| ++..+++|++|++.+ |++++|+||||||||||||+| |+..+...-| .++.+
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG--~~Vpq 824 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMG--CYVPA 824 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHHHTTT--CCEES
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHHhhee--EEecc
Confidence 34699999 99999 778899999999987 999999999999999999999 7632100000 00111
Q ss_pred eecCCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCC
Q 048654 230 EVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGF 309 (723)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl 309 (723)
+.. .... .+. ++..+|+
T Consensus 825 ~~~----------------------------~l~v-------~d~----------------------------I~~rig~ 841 (1022)
T 2o8b_B 825 EVC----------------------------RLTP-------IDR----------------------------VFTRLGA 841 (1022)
T ss_dssp SEE----------------------------EECC-------CSB----------------------------EEEECC-
T ss_pred CcC----------------------------CCCH-------HHH----------------------------HHHHcCC
Confidence 000 0000 000 0112343
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH-HHH---HHHHhhc-CcEEEEEeCCHHHHHhhC
Q 048654 310 TKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAV-LWL---EEYLCRW-KKTLVVVSHDRDFLNTVC 384 (723)
Q Consensus 310 ~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~-~~L---~~~L~~~-~~TVIivsHdl~~l~~ia 384 (723)
.+.. .+..+++|+++++ +++|++++.+|.||||||||+|+|+... ..+ .+.|.+. +.++|++||+++++..+|
T Consensus 842 ~d~~-~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~ 919 (1022)
T 2o8b_B 842 SDRI-MSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYS 919 (1022)
T ss_dssp ---------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTS
T ss_pred HHHH-hhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhC
Confidence 3222 2445678888775 9999999999999999999999998763 333 3444433 789999999999999999
Q ss_pred CEEEEEeCCEEE
Q 048654 385 TEIIHLHDQKLH 396 (723)
Q Consensus 385 d~Ii~L~~G~i~ 396 (723)
|++++++ |++.
T Consensus 920 d~~~v~~-g~~~ 930 (1022)
T 2o8b_B 920 QNVAVRL-GHMA 930 (1022)
T ss_dssp SCSSEEE-EEEE
T ss_pred Ccceeec-CeEE
Confidence 9998874 7775
No 148
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.74 E-value=1.1e-17 Score=186.50 Aligned_cols=75 Identities=20% Similarity=0.332 Sum_probs=67.0
Q ss_pred CCCCCCChHHHHHHHHHHHHc----cCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCCHHHHHhhCCEEE
Q 048654 316 RPTKSFSGGWRMRISLARALF----VQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~----~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHdl~~l~~iad~Ii 388 (723)
+++..||||||||++||++|+ .+|+||||||||++||+..+..|.++|.++ +.++|+|||+..++ ..||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEEE
Confidence 445679999999999999999 589999999999999999999999999876 35999999997765 5699999
Q ss_pred EEe
Q 048654 389 HLH 391 (723)
Q Consensus 389 ~L~ 391 (723)
+|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 886
No 149
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.74 E-value=2.6e-20 Score=201.64 Aligned_cols=189 Identities=15% Similarity=0.213 Sum_probs=123.2
Q ss_pred CCeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccc
Q 048654 493 PPLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDL 572 (723)
Q Consensus 493 ~~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~ 572 (723)
+++++++++++.|+.. ..+|+++ |+|.+|++++|+||||||||||+++|+|+..|+.|.|...+...- -+.+ +...
T Consensus 43 ~~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~-ev~~-~i~~ 118 (347)
T 2obl_A 43 PDPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGR-EVNE-FLAL 118 (347)
T ss_dssp SCSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHH-HHHH-HHTT
T ss_pred CCCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHH-HHHH-HHHh
Confidence 3578899999999732 4589999 999999999999999999999999999999999998876553100 0000 0000
Q ss_pred cCccccHHHHHHhhCCCCCCCcHHHHHH---------HHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEe
Q 048654 573 LTMEETPVSYLLRLHPDQEGLSKQEAVR---------AKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlL 643 (723)
.....+........ ........++. +++...+-.-......+..||+|| |||++| +.+|++
T Consensus 119 --~~~~~~~~~v~~~~-~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~--- 188 (347)
T 2obl_A 119 --LPQSTLSKCVLVVT-TSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV--- 188 (347)
T ss_dssp --SCHHHHTTEEEEEE-CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC---
T ss_pred --hhhhhhhceEEEEE-CCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc---
Confidence 00000000000000 00000111111 111111110000013467899999 899999 578877
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcC----c------eEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCH
Q 048654 644 DEPTNHLDMQSIDALADALDEFT----G------GVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTF 706 (723)
Q Consensus 644 DEPT~~LD~~s~~~l~~~L~~~~----~------tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~ 706 (723)
|+|||+.....+.+++.+.+ + ||+++|||++ ..+| |++++|.+|+|+. +++.
T Consensus 189 ---t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~-----d~v~~i~dG~Ivl-~~~l 250 (347)
T 2obl_A 189 ---RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIG-----DEVRSILDGHIVL-TREL 250 (347)
T ss_dssp ---BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHH-----HHHHHHCSEEEEB-CHHH
T ss_pred ---ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--Chhh-----hheEEeeCcEEEE-eCCH
Confidence 99999999999999998763 2 7999999998 5678 4899999999973 4443
No 150
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.74 E-value=1.6e-19 Score=191.99 Aligned_cols=183 Identities=15% Similarity=0.102 Sum_probs=117.6
Q ss_pred eeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHH--HHHH
Q 048654 180 LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLR--EEVA 257 (723)
Q Consensus 180 vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~--~~~~ 257 (723)
.+..+||++.+|++++|+||||||||||+++|+|++.+. .++|.+.+.++.. .... .+...+. ..+.
T Consensus 89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~--~g~V~l~g~d~~r--~~a~-------~ql~~~~~~~~i~ 157 (302)
T 3b9q_A 89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAAGDTFR--AAAS-------DQLEIWAERTGCE 157 (302)
T ss_dssp CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEECCCCSC--HHHH-------HHHHHHHHHHTCE
T ss_pred cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeecccc--hhHH-------HHHHHHHHhcCce
Confidence 345789999999999999999999999999999986543 4566666654321 1110 1111111 1122
Q ss_pred hhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHcc
Q 048654 258 SLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFV 337 (723)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~ 337 (723)
++.+... .......+.+.+... .. .+. ...+++.+|+.+ ..++++.+|| +||++|||||+.
T Consensus 158 ~v~q~~~-----~~~~~~~v~e~l~~~--~~--~~~------d~~lldt~gl~~-~~~~~~~eLS---kqr~~iaral~~ 218 (302)
T 3b9q_A 158 IVVAEGD-----KAKAATVLSKAVKRG--KE--EGY------DVVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSG 218 (302)
T ss_dssp EECCC-------CCCHHHHHHHHHHHH--HH--TTC------SEEEECCCCCSS-CCHHHHHHHH---HHHHHHHTTSTT
T ss_pred EEEecCC-----ccCHHHHHHHHHHHH--HH--cCC------cchHHhcCCCCc-chhHHHHHHH---HHHHHHHHhhcc
Confidence 2211100 001111111211110 00 000 012456677753 3356778899 999999999999
Q ss_pred CCC--EEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeC---------CHHHHHhhCCEEEEEeCCEE
Q 048654 338 QPT--LLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSH---------DRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 338 ~P~--lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsH---------dl~~l~~iad~Ii~L~~G~i 395 (723)
+|+ +|+|| ||++||+..+. ..+-+..+.|+|++|| .++.+..++..|.++..|+.
T Consensus 219 ~P~e~lLvLD-ptsglD~~~~~--~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 219 APNEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp CCSEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCeeEEEEe-CCCCcCHHHHH--HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 999 99999 99999998653 3333356889999999 67788888899999999964
No 151
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.73 E-value=2.7e-20 Score=201.54 Aligned_cols=192 Identities=15% Similarity=0.196 Sum_probs=123.2
Q ss_pred cceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 164 KDITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 164 ~~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
..++++++++.|+ +..+|+++ |+|.+|+++||+||||||||||+++|+|+.. ++.+.+.+.++. ......+
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~-----~~ev~~~ 115 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGER-----GREVNEF 115 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCC-----HHHHHHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEeccc-----HHHHHHH
Confidence 3688999999998 78899999 9999999999999999999999999999864 455666655432 1111111
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFS 322 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LS 322 (723)
+.... . ..+.+...... .. ......++...+..+ .+.+++...|..-...-..+..||
T Consensus 116 i~~~~------~--~~~~~~v~~~~-~~---~~~~~~r~~~~~~~~----------~~ae~~~~~~~~vl~~ld~~~~lS 173 (347)
T 2obl_A 116 LALLP------Q--STLSKCVLVVT-TS---DRPALERMKAAFTAT----------TIAEYFRDQGKNVLLMMDSVTRYA 173 (347)
T ss_dssp HTTSC------H--HHHTTEEEEEE-CT---TSCHHHHHHHHHHHH----------HHHHHHHTTTCEEEEEEETHHHHH
T ss_pred HHhhh------h--hhhhceEEEEE-CC---CCCHHHHHHHHHHHH----------HHHHHHHhccccHHHHHhhHHHHH
Confidence 11000 0 00111000000 00 000111111111000 011111111211000014577899
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-----Cc-----EEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW-----KK-----TLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~-----~~-----TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
+|| |||+|| +.+|++ |+|||+.....+.+++.+. +. ||+++|||++ ..+||++++|.+
T Consensus 174 ~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~d 241 (347)
T 2obl_A 174 RAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILD 241 (347)
T ss_dssp HHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCS
T ss_pred HHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeC
Confidence 999 899999 688888 9999999999999999865 33 8999999999 678999999999
Q ss_pred CEEEE
Q 048654 393 QKLHF 397 (723)
Q Consensus 393 G~i~~ 397 (723)
|+|+.
T Consensus 242 G~Ivl 246 (347)
T 2obl_A 242 GHIVL 246 (347)
T ss_dssp EEEEB
T ss_pred cEEEE
Confidence 99964
No 152
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.73 E-value=4.1e-20 Score=199.04 Aligned_cols=133 Identities=17% Similarity=0.175 Sum_probs=95.4
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHh
Q 048654 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVAS 258 (723)
Q Consensus 179 ~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 258 (723)
++++++||.|++|++++|+||||||||||+++|+|++.|. .+.|.+.+......
T Consensus 159 ~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~--~g~i~i~~~~e~~~------------------------ 212 (330)
T 2pt7_A 159 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE--ERIISIEDTEEIVF------------------------ 212 (330)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT--SCEEEEESSCCCCC------------------------
T ss_pred HHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC--CcEEEECCeecccc------------------------
Confidence 4899999999999999999999999999999999987654 45555433210000
Q ss_pred hhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccC
Q 048654 259 LQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQ 338 (723)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~ 338 (723)
... .. .+++ ..+ |||+||++||+||..+
T Consensus 213 -~~~----------~~-------------------------------~i~~---~~g-------gg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 213 -KHH----------KN-------------------------------YTQL---FFG-------GNITSADCLKSCLRMR 240 (330)
T ss_dssp -SSC----------SS-------------------------------EEEE---ECB-------TTBCHHHHHHHHTTSC
T ss_pred -ccc----------hh-------------------------------EEEE---EeC-------CChhHHHHHHHHhhhC
Confidence 000 00 0000 000 8999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 339 PTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 339 P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
|++|||||||+. .... ++..+..-+.|+|+++|+.+ +...||||++|.+|.
T Consensus 241 p~ilildE~~~~---e~~~-~l~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 241 PDRIILGELRSS---EAYD-FYNVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp CSEEEECCCCST---HHHH-HHHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred CCEEEEcCCChH---HHHH-HHHHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 999999999982 2222 22333322348999999999 667899999998875
No 153
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.73 E-value=1.4e-21 Score=208.73 Aligned_cols=180 Identities=12% Similarity=0.046 Sum_probs=118.6
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEE-----------------------EeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCc
Q 048654 165 DITIDNFSVAARGKELLKSTSVR-----------------------ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKN 221 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~-----------------------i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~ 221 (723)
.|+++||++.|+ +++++++|. +.+|+++||+||||||||||+++|+|+..+..|.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 588999999994 677777765 8999999999999999999999999987665554
Q ss_pred EEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHH
Q 048654 222 IDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQAS 301 (723)
Q Consensus 222 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 301 (723)
..+.++.|+......+..+ .+..+.. . + ........++.
T Consensus 121 ~~v~~v~qd~~~~~~t~~e--------------~~~~~~~---~-----g-------------------~~~~~d~~~~~ 159 (312)
T 3aez_A 121 PRVDLVTTDGFLYPNAELQ--------------RRNLMHR---K-----G-------------------FPESYNRRALM 159 (312)
T ss_dssp CCEEEEEGGGGBCCHHHHH--------------HTTCTTC---T-----T-------------------SGGGBCHHHHH
T ss_pred CeEEEEecCccCCcccHHH--------------HHHHHHh---c-----C-------------------CChHHHHHHHH
Confidence 3455665543322222111 1110000 0 0 00001123455
Q ss_pred HHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHH
Q 048654 302 KILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLN 381 (723)
Q Consensus 302 ~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~ 381 (723)
++|+.++ .. ..+.++..|||||+||+++|+|++.+|+|||||||+..+|+.. ..+..+-..+|+|+|+.+...
T Consensus 160 ~~L~~l~-~~-~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~ 232 (312)
T 3aez_A 160 RFVTSVK-SG-SDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIE 232 (312)
T ss_dssp HHHHHHH-TT-CSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHH
T ss_pred HHHHHhC-CC-cccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHH
Confidence 6677776 22 2245678999999999999999999999999999999998621 123333335677888876643
Q ss_pred -hhCCEEEEEeCCE
Q 048654 382 -TVCTEIIHLHDQK 394 (723)
Q Consensus 382 -~iad~Ii~L~~G~ 394 (723)
..++|.+.+.++.
T Consensus 233 ~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 233 QWYVSRFLAMRTTA 246 (312)
T ss_dssp HHHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHhcc
Confidence 3455555555543
No 154
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.72 E-value=3.8e-21 Score=195.03 Aligned_cols=149 Identities=12% Similarity=0.095 Sum_probs=81.9
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCC-----hHHHHHHHHhhHHHHHHH
Q 048654 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDD-----RSAIQAVVSAHEELVKLR 253 (723)
Q Consensus 179 ~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~-----~~~~~~~~~~~~~~~~l~ 253 (723)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |. |.+ +..+.... .... .++...+. +.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~--i~~-g~~~~~~~~~~~~~~~i-~~~~~~~~---~~ 80 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NY--FYF-SVSCTTRKKREKEKEGV-DYYFIDKT---IF 80 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TT--EEE-CCCEECSCCCSSCCBTT-TBEECCHH---HH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--Cc--EEE-eecccCCCCCcccccCC-eEEECCHH---HH
Confidence 4699999999999999999999999999999999976 3 44 333 33221110 0000 00000111 11
Q ss_pred HHHH----hhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHH
Q 048654 254 EEVA----SLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRI 329 (723)
Q Consensus 254 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRv 329 (723)
.... .++..... . . ..+.. ...+.++++...+. ..+ ..|||||+||+
T Consensus 81 ~~~~~~~~~l~~~~~~-------------~-------~--~~g~~--~~~i~~~l~~~~~~--il~---~~lsggq~qR~ 131 (218)
T 1z6g_A 81 EDKLKNEDFLEYDNYA-------------N-------N--FYGTL--KSEYDKAKEQNKIC--LFE---MNINGVKQLKK 131 (218)
T ss_dssp HHHHHTTCEEEEEEET-------------T-------E--EEEEE--HHHHHHHHHTTCEE--EEE---ECHHHHHHHTT
T ss_pred HHhhhccchhhhhhcc-------------c-------c--cCCCc--HHHHHHHHhCCCcE--EEE---ecHHHHHHHHH
Confidence 1111 00000000 0 0 00111 12355566654431 222 57999999999
Q ss_pred HH-----HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q 048654 330 SL-----ARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW 366 (723)
Q Consensus 330 aL-----ArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~ 366 (723)
+| |++|+..|++++|||||+++|..+...+.+.|.+.
T Consensus 132 ~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~ 173 (218)
T 1z6g_A 132 STHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQL 173 (218)
T ss_dssp CSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 99 89999999999999999999998877777776543
No 155
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.72 E-value=6.8e-18 Score=202.75 Aligned_cols=153 Identities=18% Similarity=0.142 Sum_probs=105.9
Q ss_pred ceEEEeEEEEe-----CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHH--------hCCCCCCCcEE-EEEeeee
Q 048654 165 DITIDNFSVAA-----RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA--------WRKIPVPKNID-VLLVEQE 230 (723)
Q Consensus 165 ~I~l~nls~~y-----~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~--------G~~~~~~~~~~-i~~~~q~ 230 (723)
.|.+++...-+ ++..+++|++|++.+|++++|+||||||||||||+|+ |...| .... +..
T Consensus 631 ~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp--a~~~~~~~---- 704 (934)
T 3thx_A 631 RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP--CESAEVSI---- 704 (934)
T ss_dssp EEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS--EEEEEEEC----
T ss_pred ceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc--cccccchH----
Confidence 46666654432 3457899999999999999999999999999999994 32211 1100 000
Q ss_pred ecCCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCC
Q 048654 231 VVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFT 310 (723)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~ 310 (723)
+..++..+|+.
T Consensus 705 ---------------------------------------------------------------------~d~i~~~ig~~ 715 (934)
T 3thx_A 705 ---------------------------------------------------------------------VDCILARVGAG 715 (934)
T ss_dssp ---------------------------------------------------------------------CSEEEEECC--
T ss_pred ---------------------------------------------------------------------HHHHHHhcCch
Confidence 00112233433
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHH--ccCCCEEEEeCCCCCCCHHHHHHH----HHHHhh-cCcEEEEEeCCHHHHHhh
Q 048654 311 KEMQGRPTKSFSGGWRMRISLARAL--FVQPTLLLLDEPTNHLDLRAVLWL----EEYLCR-WKKTLVVVSHDRDFLNTV 383 (723)
Q Consensus 311 ~~~~~~~~~~LSGGqrQRvaLArAL--~~~P~lLLLDEPT~~LD~~~~~~L----~~~L~~-~~~TVIivsHdl~~l~~i 383 (723)
+.....+|+|+.+++.+|++| +.+|+||||||||+|||+.....+ .+.|.+ .+.|||++||+.++. .+
T Consensus 716 ----d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~l 790 (934)
T 3thx_A 716 ----DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-AL 790 (934)
T ss_dssp -----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GG
T ss_pred ----hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HH
Confidence 223456888888888888888 999999999999999999766544 444443 478999999997655 68
Q ss_pred CCEEEEEeCCEEEE
Q 048654 384 CTEIIHLHDQKLHF 397 (723)
Q Consensus 384 ad~Ii~L~~G~i~~ 397 (723)
||++..|.+|++..
T Consensus 791 ad~~~~v~ng~v~~ 804 (934)
T 3thx_A 791 ANQIPTVNNLHVTA 804 (934)
T ss_dssp GGTCTTEEEEEEEE
T ss_pred hcccceeEeeEEEE
Confidence 99999999998864
No 156
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.72 E-value=1.5e-19 Score=189.22 Aligned_cols=138 Identities=17% Similarity=0.186 Sum_probs=85.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc--------eeEEEEcccc--ccccCccccHHHHHHhhCCCCCCCc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------LRIGRYSQHF--VDLLTMEETPVSYLLRLHPDQEGLS 594 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------~~ig~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (723)
.++|+||||||||||+|+|+|+..|++|+|.+.+. ..+++++|.. ...+++.+++... .... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g-~~~~----~~~ 78 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFG-DQIN----NEN 78 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC---CCSB----CTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhh-hhcc----cHH
Confidence 48999999999999999999999999999987553 3588998863 2234444443211 0000 111
Q ss_pred HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEec
Q 048654 595 KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSH 674 (723)
Q Consensus 595 ~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSH 674 (723)
..+.+..++. . ......+.+|||||+|||++|||++. +++|||||.+||+.... +++.|.+. .+||+|.|
T Consensus 79 ~~~~i~~~~~----~-~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~-~l~~L~~~-~~vI~Vi~ 148 (270)
T 3sop_A 79 CWEPIEKYIN----E-QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE-FMKHLSKV-VNIIPVIA 148 (270)
T ss_dssp CSHHHHHHHH----H-HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH-HHHHHHTT-SEEEEEET
T ss_pred HHHHHHHHHH----H-HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH-HHHHHHhc-CcEEEEEe
Confidence 1122333332 1 11123457899999999999999886 99999999999998854 44455555 78888888
Q ss_pred CHH
Q 048654 675 DSR 677 (723)
Q Consensus 675 D~~ 677 (723)
..+
T Consensus 149 K~D 151 (270)
T 3sop_A 149 KAD 151 (270)
T ss_dssp TGG
T ss_pred ccc
Confidence 765
No 157
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.72 E-value=6e-18 Score=199.83 Aligned_cols=146 Identities=25% Similarity=0.242 Sum_probs=106.7
Q ss_pred CeEEEEEEEEEcCC-CcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-CCcceEEECCceeEEEEcccccc
Q 048654 494 PLLQLIEVSFSYPN-REDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-PTEGEVRRSQKLRIGRYSQHFVD 571 (723)
Q Consensus 494 ~~l~~~~ls~~y~~-~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-p~~G~I~~~~~~~ig~~~q~~~~ 571 (723)
..|.+++...-+-. ...++++||||+ |++++|+||||||||||||+|+|+.. ++.|.+.......+++++|.+.
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~- 624 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYT- 624 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEE-
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceeehhccceeeHHHhhc-
Confidence 34667666322200 124689999998 99999999999999999999999874 6778754333334455444211
Q ss_pred ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHH--ccCCCeEEeccC---
Q 048654 572 LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS--MSKPHILLLDEP--- 646 (723)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral--~~~p~lLlLDEP--- 646 (723)
. ++.... ....+|+|+++++.+++++ +.+|+|||||||
T Consensus 625 ~---------------------------------~~~~d~----l~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 625 R---------------------------------IGASDD----LAGGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp E---------------------------------CCC----------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred c---------------------------------CCHHHH----HHhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 1 111110 0124799999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHcCceEEEEecCHHHHH
Q 048654 647 TNHLDMQSI-DALADALDEFTGGVVLVSHDSRLIS 680 (723)
Q Consensus 647 T~~LD~~s~-~~l~~~L~~~~~tVIivSHD~~~~~ 680 (723)
|++||..+. ..+.+.|.+.+.+||++|||.+++.
T Consensus 668 Ts~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~ 702 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 702 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 999999886 5788888887789999999998864
No 158
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.71 E-value=8.6e-18 Score=177.73 Aligned_cols=171 Identities=17% Similarity=0.173 Sum_probs=106.2
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc-eEEE-CCce-------eEEEEccccccccCccccHHHH
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG-EVRR-SQKL-------RIGRYSQHFVDLLTMEETPVSY 582 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G-~I~~-~~~~-------~ig~~~q~~~~~~~~~~~~~~~ 582 (723)
+|+++++.|.+|++++|+||||||||||+++|+|.+.|.+| .|.+ .... ++..+.+.. .+..... +..
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~--~~~~~~~-l~~ 100 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRV--RLRQSDS-LKR 100 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTC--CGGGCHH-HHH
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCC--Chhhccc-ccc
Confidence 69999999999999999999999999999999999999877 5533 2110 000000000 0000000 000
Q ss_pred HHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHH-HHHHHHHHHHccCCCeEEeccCCC---C---CCH-HH
Q 048654 583 LLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQ-KARVVFTSISMSKPHILLLDEPTN---H---LDM-QS 654 (723)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGq-kqRv~lAral~~~p~lLlLDEPT~---~---LD~-~s 654 (723)
...... .....+..+|...++. .. ..+..+|.+| +||+. |+++..+|++|||||||+ + +|. ..
T Consensus 101 -~~~~~~----~~~~~~~~~l~~~~l~--i~-~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~ 171 (296)
T 1cr0_A 101 -EIIENG----KFDQWFDELFGNDTFH--LY-DSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKM 171 (296)
T ss_dssp -HHHHHT----HHHHHHHHHHSSSCEE--EE-CCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHH
T ss_pred -CCCCHH----HHHHHHHHHhccCCEE--EE-CCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHH
Confidence 000000 0112233444433331 11 1235789999 66666 999999999999999999 5 455 56
Q ss_pred HHHHHHHHHHc----CceEEEEecCH--H--------------------HHHHhcCcCCCcEEEEEECCeE
Q 048654 655 IDALADALDEF----TGGVVLVSHDS--R--------------------LISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 655 ~~~l~~~L~~~----~~tVIivSHD~--~--------------------~~~~~~d~~~~drv~vl~~G~i 699 (723)
...+.+.|+++ +.+||+|||+. + .+..+|| +|++|++|+.
T Consensus 172 ~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD-----~vi~L~~~~~ 237 (296)
T 1cr0_A 172 IDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSD-----TIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCS-----EEEEEEEC--
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCc-----EEEEEecCcc
Confidence 66777777554 57999999995 4 7888885 9999998864
No 159
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.71 E-value=8.8e-18 Score=201.77 Aligned_cols=156 Identities=20% Similarity=0.170 Sum_probs=104.9
Q ss_pred CeEEEEEEEEEcCC---CcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHH--------HcCCCCCcceEEECCceeE
Q 048654 494 PLLQLIEVSFSYPN---REDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLL--------AGDLSPTEGEVRRSQKLRI 562 (723)
Q Consensus 494 ~~l~~~~ls~~y~~---~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L--------~Gl~~p~~G~I~~~~~~~i 562 (723)
..|.+++....+-. ...++++||+|++.+|++++|+||||||||||||+| .|...|..+.. +
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------~ 702 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------V 702 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-------E
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-------c
Confidence 35666665433311 123688999999999999999999999999999999 55544433221 1
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHH--ccCCCe
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS--MSKPHI 640 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral--~~~p~l 640 (723)
+.+. .++.++|+... ....+|+|+.+++.+|+++ +.+|+|
T Consensus 703 ~~~d----------------------------------~i~~~ig~~d~----l~~~lStf~~e~~~~a~il~~a~~~sL 744 (934)
T 3thx_A 703 SIVD----------------------------------CILARVGAGDS----QLKGVSTFMAEMLETASILRSATKDSL 744 (934)
T ss_dssp ECCS----------------------------------EEEEECC-------------CHHHHHHHHHHHHHHHCCTTCE
T ss_pred hHHH----------------------------------HHHHhcCchhh----HHHhHhhhHHHHHHHHHHHHhccCCcE
Confidence 1110 01222333221 2246888888888888888 999999
Q ss_pred EEeccCCCCCCHHHHHHH-HHH---HHH-cCceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEE
Q 048654 641 LLLDEPTNHLDMQSIDAL-ADA---LDE-FTGGVVLVSHDSRLISRVCDDEERSEIWVVENGTVS 700 (723)
Q Consensus 641 LlLDEPT~~LD~~s~~~l-~~~---L~~-~~~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~ 700 (723)
|||||||+|||+.....+ ..+ |.+ .+.+||++|||.+++ .+|| ++..|.+|++.
T Consensus 745 lLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~-~lad-----~~~~v~ng~v~ 803 (934)
T 3thx_A 745 IIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELT-ALAN-----QIPTVNNLHVT 803 (934)
T ss_dssp EEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGG-GGGG-----TCTTEEEEEEE
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHH-HHhc-----ccceeEeeEEE
Confidence 999999999999877666 333 333 356899999998766 5774 67777777764
No 160
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.71 E-value=1.5e-19 Score=201.54 Aligned_cols=192 Identities=14% Similarity=0.137 Sum_probs=122.8
Q ss_pred cceEEEeEEEEeC-CeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHH
Q 048654 164 KDITIDNFSVAAR-GKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAV 242 (723)
Q Consensus 164 ~~I~l~nls~~y~-~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~ 242 (723)
..++++++++.|+ +..+|+++ |+|.+|++++|+|||||||||||++|+|+.. +..|.|.+.++.. .....+
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~-----~ev~~~ 201 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERG-----REVKDF 201 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCH-----HHHHHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceec-----HHHHHH
Confidence 3578899999998 78899999 9999999999999999999999999999864 4566676655411 011111
Q ss_pred HHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCC-ccccCCCCCCC
Q 048654 243 VSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFT-KEMQGRPTKSF 321 (723)
Q Consensus 243 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~-~~~~~~~~~~L 321 (723)
.........+...+.++.+... .......+.+...... ++....+-. .... ..+..|
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~-----~~~~~~~v~~~~~~~a----------------e~~~~~~~~v~~~l-d~l~~l 259 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADV-----SPLLRMQGAAYATRIA----------------EDFRDRGQHVLLIM-DSLTRY 259 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTS-----CHHHHHHHHHHHHHHH----------------HHHHTTTCEEEEEE-ECHHHH
T ss_pred HHhhccccccCceEEEEECCCC-----CHHHHHHHHHHHHHHH----------------HHHHhCCCCHHHHH-HhHHHH
Confidence 0000000011111111111000 0000111111111100 111111100 0112 235779
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcC------c------EEEEEeCCHHHHHhhCCEEEE
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWK------K------TLVVVSHDRDFLNTVCTEIIH 389 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~------~------TVIivsHdl~~l~~iad~Ii~ 389 (723)
|+|| |||+|| +.+|++ |++||+.....+.++|.+++ . ||+++|||++ ..+||++++
T Consensus 260 S~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~ 327 (438)
T 2dpy_A 260 AMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARA 327 (438)
T ss_dssp HHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHH
T ss_pred HHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEE
Confidence 9999 999999 889988 99999999999999997652 2 8999999999 678999999
Q ss_pred EeCCEEEE
Q 048654 390 LHDQKLHF 397 (723)
Q Consensus 390 L~~G~i~~ 397 (723)
|.+|+++.
T Consensus 328 l~dG~Ivl 335 (438)
T 2dpy_A 328 ILDGHIVL 335 (438)
T ss_dssp HSSEEEEE
T ss_pred EeCcEEEE
Confidence 99999864
No 161
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.70 E-value=1.4e-18 Score=188.34 Aligned_cols=181 Identities=15% Similarity=0.128 Sum_probs=116.5
Q ss_pred EeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHH--HHHHHhh
Q 048654 182 KSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKL--REEVASL 259 (723)
Q Consensus 182 ~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~ 259 (723)
..+||++.+|++++||||||||||||+++|+|++.+. .++|.+.+.++.. .... .++..+ +..+.++
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~--~G~V~l~g~D~~r--~~a~-------eql~~~~~r~~i~~v 216 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE--GTKVLMAAGDTFR--AAAS-------DQLEIWAERTGCEIV 216 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEECCCCSC--HHHH-------HHHHHHHHHHTCEEE
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc--CCEEEEecccccc--cchh-------HHHHHHHHhcCeEEE
Confidence 4688999999999999999999999999999986543 4667766654321 1110 111111 1112222
Q ss_pred hcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCC
Q 048654 260 QNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQP 339 (723)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P 339 (723)
.+... .......+.+.+.... .. +.+ ..+++.+|+.+ ..++.+.+|| +||++|||||+.+|
T Consensus 217 ~q~~~-----~~~p~~tv~e~l~~~~--~~--~~d------~~lldt~Gl~~-~~~~~~~eLS---kqr~~iaral~~~P 277 (359)
T 2og2_A 217 VAEGD-----KAKAATVLSKAVKRGK--EE--GYD------VVLCDTSGRLH-TNYSLMEELI---ACKKAVGKIVSGAP 277 (359)
T ss_dssp CCSSS-----SCCHHHHHHHHHHHHH--HT--TCS------EEEEECCCCSS-CCHHHHHHHH---HHHHHHHHHSTTCC
T ss_pred Eeccc-----ccChhhhHHHHHHHHH--hC--CCH------HHHHHhcCCCh-hhhhHHHHHH---HHHHHHHHHHhcCC
Confidence 21100 0011111112211100 00 000 12456677753 3356778899 99999999999999
Q ss_pred C--EEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeC---------CHHHHHhhCCEEEEEeCCEE
Q 048654 340 T--LLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSH---------DRDFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 340 ~--lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsH---------dl~~l~~iad~Ii~L~~G~i 395 (723)
+ +|||| ||++||+..+. ..+-+..+.|+|++|| .++.+...+..|.++..|+.
T Consensus 278 ~e~lLvLD-pttglD~~~~~--~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 278 NEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp SEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CceEEEEc-CCCCCCHHHHH--HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9 99999 99999998653 3333356889999999 57788888899999999864
No 162
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.70 E-value=1.3e-18 Score=181.21 Aligned_cols=124 Identities=15% Similarity=0.185 Sum_probs=92.0
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-cceEEECCceeEEEEccccccccCccccHHHHHHhhCCCC
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT-EGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQ 590 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~-~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~ 590 (723)
+|+++| +.+|++++|+||||||||||+++|+|+++|+ +|+|...+.. +.|++|..... ..
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~~~--------------v~-- 76 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKKSI--------------VN-- 76 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSSE--------------EE--
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCccee--------------ee--
Confidence 789999 8999999999999999999999999999998 9999876542 33333321000 00
Q ss_pred CCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEE
Q 048654 591 EGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVV 670 (723)
Q Consensus 591 ~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVI 670 (723)
. ..+|+.. ..| |++||++|..+|++||||||| |+.+...+.+.. ..+.+||
T Consensus 77 ----q--------~~~gl~~-------~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl 127 (261)
T 2eyu_A 77 ----Q--------REVGEDT-------KSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVF 127 (261)
T ss_dssp ----E--------EEBTTTB-------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEE
T ss_pred ----H--------HHhCCCH-------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEE
Confidence 0 1234321 122 899999999999999999999 999877666654 3456899
Q ss_pred EEecCHHHHHHhcC
Q 048654 671 LVSHDSRLISRVCD 684 (723)
Q Consensus 671 ivSHD~~~~~~~~d 684 (723)
++||+.+ +..+||
T Consensus 128 ~t~H~~~-~~~~~d 140 (261)
T 2eyu_A 128 GTLHTNT-AIDTIH 140 (261)
T ss_dssp EEECCSS-HHHHHH
T ss_pred EEeCcch-HHHHHH
Confidence 9999987 445553
No 163
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.70 E-value=2.8e-17 Score=156.42 Aligned_cols=80 Identities=30% Similarity=0.490 Sum_probs=70.0
Q ss_pred cCCCCCCCHHHHHHHHHH------HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcC
Q 048654 614 LTPIAKLSGGQKARVVFT------SISMSKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCD 684 (723)
Q Consensus 614 ~~~i~~LSGGqkqRv~lA------ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d 684 (723)
.+++.+|||||||||+|| |+|+.+|++|||||||+|||+.++..+.+.|.++. .|||+||||.+ +..+||
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~d 130 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD 130 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhCC
Confidence 457789999999999876 89999999999999999999999999999998873 58999999995 567884
Q ss_pred cCCCcEEEEE--ECCeE
Q 048654 685 DEERSEIWVV--ENGTV 699 (723)
Q Consensus 685 ~~~~drv~vl--~~G~i 699 (723)
++++| .+|..
T Consensus 131 -----~ii~l~~~~g~s 142 (148)
T 1f2t_B 131 -----HVIRISLENGSS 142 (148)
T ss_dssp -----EEEEEEEETTEE
T ss_pred -----EEEEEEcCCCeE
Confidence 99999 56644
No 164
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.70 E-value=5.9e-18 Score=173.29 Aligned_cols=72 Identities=13% Similarity=0.006 Sum_probs=53.1
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCC-----HHHHHHHHHHHh---hcCcEEEEEeCCHHHH---------Hhh
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLD-----LRAVLWLEEYLC---RWKKTLVVVSHDRDFL---------NTV 383 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD-----~~~~~~L~~~L~---~~~~TVIivsHdl~~l---------~~i 383 (723)
.+.++......+..-..+|++|||||||++|| +..+..+.++++ +.+.|||+|||+++.+ ..+
T Consensus 118 ~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~ 197 (251)
T 2ehv_A 118 FNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEF 197 (251)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGG
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhE
Confidence 34556555555666678999999999999997 555555655554 4578999999999998 678
Q ss_pred C-CEEEEEeC
Q 048654 384 C-TEIIHLHD 392 (723)
Q Consensus 384 a-d~Ii~L~~ 392 (723)
| |+|++|+.
T Consensus 198 ~aD~vi~l~~ 207 (251)
T 2ehv_A 198 IARGVIVLDL 207 (251)
T ss_dssp GCSEEEEEEE
T ss_pred eeeEEEEEee
Confidence 8 99999973
No 165
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.69 E-value=2e-17 Score=198.24 Aligned_cols=151 Identities=18% Similarity=0.206 Sum_probs=97.4
Q ss_pred ceEEEeEEEEe-------CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChH
Q 048654 165 DITIDNFSVAA-------RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237 (723)
Q Consensus 165 ~I~l~nls~~y-------~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~ 237 (723)
.|.+++...-+ ++..|++||||++++|++++|+||||||||||||+|++....
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-------------------- 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-------------------- 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------
Confidence 46666554322 356799999999999999999999999999999999753100
Q ss_pred HHHHHHHhhHHHHHHHHHHHh-hhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCC
Q 048654 238 AIQAVVSAHEELVKLREEVAS-LQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGR 316 (723)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~ 316 (723)
...+. ++.. ... ++ .+..++..+|+.+.. .+
T Consensus 700 ----------------aq~g~~vpa~-----------~~~--------------i~------~~d~i~~~ig~~d~l-~~ 731 (918)
T 3thx_B 700 ----------------AQIGSYVPAE-----------EAT--------------IG------IVDGIFTRMGAADNI-YK 731 (918)
T ss_dssp ----------------HHHTCCBSSS-----------EEE--------------EE------CCSEEEEEC---------
T ss_pred ----------------hhcCccccch-----------hhh--------------hh------HHHHHHHhCChHHHH-HH
Confidence 00000 0000 000 00 000112233443322 45
Q ss_pred CCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHH-HHHh----hcCcEEEEEeCCHHHHHhhCC
Q 048654 317 PTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLE-EYLC----RWKKTLVVVSHDRDFLNTVCT 385 (723)
Q Consensus 317 ~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~-~~L~----~~~~TVIivsHdl~~l~~iad 385 (723)
..+++|+||+|++.|+++ +.+|+||||||||+|||+.....+. .+++ +.+.|||++||+++++. +||
T Consensus 732 ~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~-l~~ 803 (918)
T 3thx_B 732 GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCE-LEK 803 (918)
T ss_dssp --CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHH
T ss_pred hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHH-HHh
Confidence 678899999999999999 8999999999999999998766554 3333 24789999999987653 444
No 166
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.68 E-value=5.1e-18 Score=203.26 Aligned_cols=153 Identities=15% Similarity=0.169 Sum_probs=99.0
Q ss_pred eEEEEEEEEEc-----CCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-CcceEEECCceeEEEEccc
Q 048654 495 LLQLIEVSFSY-----PNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-TEGEVRRSQKLRIGRYSQH 568 (723)
Q Consensus 495 ~l~~~~ls~~y-----~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-~~G~I~~~~~~~ig~~~q~ 568 (723)
.|.+++...-+ +....++++||+|++.+|++++|+||||||||||||+|+++... ..|.........++++.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d-- 717 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVD-- 717 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCS--
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHH--
Confidence 56666654322 11124689999999999999999999999999999999764211 01110000000111100
Q ss_pred cccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCC
Q 048654 569 FVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTN 648 (723)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~ 648 (723)
.++..+|+..... ..++++|+|++|++.|+++ +.+|+||||||||+
T Consensus 718 --------------------------------~i~~~ig~~d~l~-~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~ 763 (918)
T 3thx_B 718 --------------------------------GIFTRMGAADNIY-KGRSTFMEELTDTAEIIRK-ATSQSLVILDELGR 763 (918)
T ss_dssp --------------------------------EEEEEC-----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTT
T ss_pred --------------------------------HHHHhCChHHHHH-HhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCC
Confidence 1122233332222 3457899999999999998 89999999999999
Q ss_pred CCCHHHHHHHH-HHHHHc----CceEEEEecCHHHHHHhcC
Q 048654 649 HLDMQSIDALA-DALDEF----TGGVVLVSHDSRLISRVCD 684 (723)
Q Consensus 649 ~LD~~s~~~l~-~~L~~~----~~tVIivSHD~~~~~~~~d 684 (723)
|||+.....+. .++..+ +.+||++|||.+++ .+|+
T Consensus 764 GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~ 803 (918)
T 3thx_B 764 GTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEK 803 (918)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHh
Confidence 99999877776 444433 56899999998876 3553
No 167
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.68 E-value=6e-17 Score=163.63 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=46.1
Q ss_pred ChHHH-HHHHHHHHHcc-------CCCEEEEeCCCCCCCHH-------H-----HHHHHHHH----hhcCcEEEEEeC--
Q 048654 322 SGGWR-MRISLARALFV-------QPTLLLLDEPTNHLDLR-------A-----VLWLEEYL----CRWKKTLVVVSH-- 375 (723)
Q Consensus 322 SGGqr-QRvaLArAL~~-------~P~lLLLDEPT~~LD~~-------~-----~~~L~~~L----~~~~~TVIivsH-- 375 (723)
+++++ +.+..+++++. +|++|+|||||++||+. . ...+...| ++.+.|||+|||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~ 180 (231)
T 4a74_A 101 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ 180 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 34433 33555555555 99999999999999983 1 11333333 345789999999
Q ss_pred --CHHHHHhhCCEEEEEeCC
Q 048654 376 --DRDFLNTVCTEIIHLHDQ 393 (723)
Q Consensus 376 --dl~~l~~iad~Ii~L~~G 393 (723)
+-..+..+||++++|++|
T Consensus 181 ~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 181 ANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp ---------CCSEEEEEEEC
T ss_pred cCcchhhHhhceEEEEEEec
Confidence 555599999999999875
No 168
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.67 E-value=2.8e-18 Score=176.73 Aligned_cols=157 Identities=15% Similarity=0.147 Sum_probs=93.3
Q ss_pred ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEEC-CceeEEEEccccc-cccCccccHHHHHHhhC
Q 048654 510 DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS-QKLRIGRYSQHFV-DLLTMEETPVSYLLRLH 587 (723)
Q Consensus 510 ~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~-~~~~ig~~~q~~~-~~~~~~~~~~~~~~~~~ 587 (723)
..+|+||||++.+|+++||+||||||||||+++|+|++ |.+.++ ....+++++|... ..++..++. ......+
T Consensus 12 ~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~~~~~l~~~~~~-~~~~~~~ 86 (245)
T 2jeo_A 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDRFYKVLTAEQKA-KALKGQY 86 (245)
T ss_dssp -----------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGGGBCCCCHHHHH-HHHTTCC
T ss_pred ceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCcCccccCHhHhh-hhhccCC
Confidence 35899999999999999999999999999999999976 443222 1235788888631 112222211 1111111
Q ss_pred C-CCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHH-c
Q 048654 588 P-DQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE-F 665 (723)
Q Consensus 588 ~-~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~-~ 665 (723)
. ..........+.+.|..+. ... ..++..||+||+||+.+ ++++.+|+++|||||+..++.. +.+ .
T Consensus 87 ~~~~~~~~~~~~~~~~L~~l~--~~~-~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~~ 154 (245)
T 2jeo_A 87 NFDHPDAFDNDLMHRTLKNIV--EGK-TVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDMF 154 (245)
T ss_dssp CTTSGGGBCHHHHHHHHHHHH--TTC-CEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTTC
T ss_pred CCCCcccccHHHHHHHHHHHH--CCC-CeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHhc
Confidence 1 0000011234455565542 222 34568999999999988 6888899999999998888764 222 3
Q ss_pred CceEEEEecC-HHHHHHhc
Q 048654 666 TGGVVLVSHD-SRLISRVC 683 (723)
Q Consensus 666 ~~tVIivSHD-~~~~~~~~ 683 (723)
..+|+++||+ ......++
T Consensus 155 ~~~i~v~th~~~~~~r~~~ 173 (245)
T 2jeo_A 155 HLRLFVDTDSDVRLSRRVL 173 (245)
T ss_dssp SEEEEEECCHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHH
Confidence 5689999997 55555555
No 169
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.67 E-value=2.4e-17 Score=168.71 Aligned_cols=171 Identities=16% Similarity=0.171 Sum_probs=95.7
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHH--cCCCCCcceEEECCcee----------E
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLA--GDLSPTEGEVRRSQKLR----------I 562 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~--Gl~~p~~G~I~~~~~~~----------i 562 (723)
++++++++..|+.-. .+|.+ .|++|++++|+||||||||||+++|+ |++++..|.+++..... +
T Consensus 6 ~~~~~~i~tg~~~lD-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFD-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASF 81 (251)
T ss_dssp --CCCEECCSCTTTG-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTT
T ss_pred ccccceeecCCHhHH-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHc
Confidence 355666776665321 13332 68999999999999999999999999 76566666665443210 1
Q ss_pred EEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEE
Q 048654 563 GRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL 642 (723)
Q Consensus 563 g~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLl 642 (723)
++.+|.+ .. .....-....... .++............+-++........+-..+|++||
T Consensus 82 g~~~~~~-------------~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~li 140 (251)
T 2ehv_A 82 GWDFEKY-------------EK--EGKIAIVDGVSSV------VGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLV 140 (251)
T ss_dssp TCCHHHH-------------HH--TTSEEEEC-------------------------CCHHHHHHHHHHHHHHTTCSEEE
T ss_pred CCChHHH-------------hh--cCCEEEEEccccc------cccccccceeccCcccHHHHHHHHHHHHHhhCCCEEE
Confidence 1111110 00 0000000000000 0000000000112344566666666666678999999
Q ss_pred eccCCCCCC-----HHHHHHHHHHHHH---cCceEEEEecCHHHH---------HHhc-CcCCCcEEEEEE
Q 048654 643 LDEPTNHLD-----MQSIDALADALDE---FTGGVVLVSHDSRLI---------SRVC-DDEERSEIWVVE 695 (723)
Q Consensus 643 LDEPT~~LD-----~~s~~~l~~~L~~---~~~tVIivSHD~~~~---------~~~~-d~~~~drv~vl~ 695 (723)
|||||++|| +.....+.++++. .+.|||+|||++..+ ..+| | +|++|+
T Consensus 141 lDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD-----~vi~l~ 206 (251)
T 2ehv_A 141 IDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIAR-----GVIVLD 206 (251)
T ss_dssp EECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCS-----EEEEEE
T ss_pred EccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeee-----EEEEEe
Confidence 999999997 5555556666544 467999999999998 5676 5 899995
No 170
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.65 E-value=1.3e-16 Score=188.41 Aligned_cols=145 Identities=20% Similarity=0.176 Sum_probs=100.4
Q ss_pred ceEEEeEEEEe---CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCC-CCCCcEEEEEeeeeecCCChHHHH
Q 048654 165 DITIDNFSVAA---RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKI-PVPKNIDVLLVEQEVVGDDRSAIQ 240 (723)
Q Consensus 165 ~I~l~nls~~y---~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~-~~~~~~~i~~~~q~~~~~~~~~~~ 240 (723)
.|.+++...-+ ++..+++|+||+ |++++|+||||||||||||+|+|+.. +..|.. +. .. ..
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~----vp----a~-~~--- 614 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSF----VP----AE-EA--- 614 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC----BS----SS-EE---
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCce----ee----hh-cc---
Confidence 47777764333 446899999999 99999999999999999999998642 221110 00 00 00
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCC
Q 048654 241 AVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKS 320 (723)
Q Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~ 320 (723)
.++.+.+ ++..++..+ .....
T Consensus 615 --------------~i~~v~~-----------------------------------------i~~~~~~~d----~l~~g 635 (765)
T 1ewq_A 615 --------------HLPLFDG-----------------------------------------IYTRIGASD----DLAGG 635 (765)
T ss_dssp --------------EECCCSE-----------------------------------------EEEECCC----------C
T ss_pred --------------ceeeHHH-----------------------------------------hhccCCHHH----HHHhc
Confidence 0000000 011122211 11235
Q ss_pred CChHHHHHHHHHHHH--ccCCCEEEEeCC---CCCCCHHHH-HHHHHHHhhcCcEEEEEeCCHHHHHhhC
Q 048654 321 FSGGWRMRISLARAL--FVQPTLLLLDEP---TNHLDLRAV-LWLEEYLCRWKKTLVVVSHDRDFLNTVC 384 (723)
Q Consensus 321 LSGGqrQRvaLArAL--~~~P~lLLLDEP---T~~LD~~~~-~~L~~~L~~~~~TVIivsHdl~~l~~ia 384 (723)
+|+|+++++.+|++| +.+|+||||||| |++||+.+. ..+.++|.+.+.|+|++||+.++.. +|
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT-CC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hh
Confidence 799999999999999 999999999999 999999886 4688888877889999999998864 44
No 171
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.65 E-value=1.9e-16 Score=159.82 Aligned_cols=169 Identities=14% Similarity=0.128 Sum_probs=104.0
Q ss_pred CeeeeEeeeE-EEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHH
Q 048654 177 GKELLKSTSV-RISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREE 255 (723)
Q Consensus 177 ~~~vL~~isl-~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~ 255 (723)
+.+.|+++.+ .|++|++++|+||||||||||++.|++...+ ..+.+.|++.+.. ...+. .....
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~---~~~~~----------~~~~~ 72 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEES---RDSII----------RQAKQ 72 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSC---HHHHH----------HHHHH
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccC---HHHHH----------HHHHH
Confidence 3567888887 8999999999999999999999999976443 2334555543221 11000 00001
Q ss_pred HHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHH
Q 048654 256 VASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARAL 335 (723)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL 335 (723)
++...+. .. ... +..+.. +...++ . . ......|.++.++...+.+.
T Consensus 73 ~~~~~~~-~~------~~~-------------~~~~~~---------~~~~~~-~-~---~~~~~~~~~~~~~~~~~~~~ 118 (235)
T 2w0m_A 73 FNWDFEE-YI------EKK-------------LIIIDA---------LMKEKE-D-Q---WSLVNLTPEELVNKVIEAKQ 118 (235)
T ss_dssp TTCCCGG-GB------TTT-------------EEEEEC---------CC-----C-T---TBCSSCCHHHHHHHHHHHHH
T ss_pred hcchHHH-Hh------hCC-------------EEEEec---------cccccC-c-e---eeecCCCHHHHHHHHHHHHH
Confidence 1100000 00 000 000000 000001 0 0 11123499999999888888
Q ss_pred ccCCC--EEEEeCCCCCC--CHHHHHHHHHHHh----hcCcEEEEEeCCH--------HHHHhhCCEEEEEeCCE
Q 048654 336 FVQPT--LLLLDEPTNHL--DLRAVLWLEEYLC----RWKKTLVVVSHDR--------DFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 336 ~~~P~--lLLLDEPT~~L--D~~~~~~L~~~L~----~~~~TVIivsHdl--------~~l~~iad~Ii~L~~G~ 394 (723)
..+|+ +|||||||+.+ |+..+..+.+.|. +.+.|||+++|+. ..+..+||+|++|+...
T Consensus 119 ~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 119 KLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp HHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 88999 99999999888 9877766666664 3478999999999 55889999999998653
No 172
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.65 E-value=1.9e-16 Score=159.98 Aligned_cols=152 Identities=13% Similarity=0.167 Sum_probs=83.1
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHH
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEA 598 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (723)
.|++|++++|+||||||||||+++|+|.+.+..|.....+ ..-|+.... .+ ....+.++..... ....
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~--~~i~~~~~~--~~--~~~~i~~~~~~~~----~~~~-- 88 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNG--SVIWIDTEN--TF--RPERIREIAQNRG----LDPD-- 88 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSC--EEEEEESSS--CC--CHHHHHHHHHHTT----SCHH--
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCC--EEEEEECCC--CC--CHHHHHHHHHHcC----CCHH--
Confidence 6899999999999999999999999996655332211111 111221110 00 0011111111111 1111
Q ss_pred HHHHHHhCCCCCCCCcCCCCCCCHHHH-HHHHHHHHHcc-------CCCeEEeccCCCCCCHH-------H-----HHHH
Q 048654 599 VRAKLGKFGLPSHNHLTPIAKLSGGQK-ARVVFTSISMS-------KPHILLLDEPTNHLDMQ-------S-----IDAL 658 (723)
Q Consensus 599 ~~~~L~~~gl~~~~~~~~i~~LSGGqk-qRv~lAral~~-------~p~lLlLDEPT~~LD~~-------s-----~~~l 658 (723)
.+++.+.+ ...++++++ +.+..+..++. +|++|+|||||++||+. . ...+
T Consensus 89 --~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~ 158 (231)
T 4a74_A 89 --EVLKHIYV--------ARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKH 158 (231)
T ss_dssp --HHHHTEEE--------EECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHH
T ss_pred --HHhhcEEE--------EecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHH
Confidence 22222221 123444443 33555555555 99999999999999983 1 1234
Q ss_pred HHHH----HHcCceEEEEec----CHHHHHHhcCcCCCcEEEEEECC
Q 048654 659 ADAL----DEFTGGVVLVSH----DSRLISRVCDDEERSEIWVVENG 697 (723)
Q Consensus 659 ~~~L----~~~~~tVIivSH----D~~~~~~~~d~~~~drv~vl~~G 697 (723)
.+.| ++.+.|||+||| +...+..+|| ++++|++|
T Consensus 159 ~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d-----~~l~l~~~ 200 (231)
T 4a74_A 159 LADLHRLANLYDIAVFVTNQVQANGGHILAHSAT-----LRVYLRKG 200 (231)
T ss_dssp HHHHHHHHHHHTCEEEEEEECC---------CCS-----EEEEEEEC
T ss_pred HHHHHHHHHHCCCeEEEEeecccCcchhhHhhce-----EEEEEEec
Confidence 4444 344679999999 5555888884 89999865
No 173
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.63 E-value=8.2e-18 Score=175.18 Aligned_cols=141 Identities=17% Similarity=0.179 Sum_probs=98.2
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|++.+. ..|.|.+.+..+...
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~-~~G~I~~~g~~i~~~----------- 67 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYV----------- 67 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH-CCCEEEEEESSCCSC-----------
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC-CCCEEEEcCCcceee-----------
Confidence 344555542 5899999 8999999999999999999999999986543 145666555432100
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
.++. . . .+.. ..+|+.. ..|
T Consensus 68 -------------~~~~---------~-~---------------~v~q-----------~~~gl~~-------~~l---- 87 (261)
T 2eyu_A 68 -------------FKHK---------K-S---------------IVNQ-----------REVGEDT-------KSF---- 87 (261)
T ss_dssp -------------CCCS---------S-S---------------EEEE-----------EEBTTTB-------SCH----
T ss_pred -------------cCCc---------c-e---------------eeeH-----------HHhCCCH-------HHH----
Confidence 0000 0 0 0000 0233321 122
Q ss_pred HHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEe
Q 048654 326 RMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLH 391 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~ 391 (723)
|++||+||..+|++||||||| |+.+...+.+.. ..+.+||+++|+.+ +..+||++++|.
T Consensus 88 --~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 --ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp --HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred --HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHhhhc
Confidence 899999999999999999999 999877666554 34789999999988 556789887774
No 174
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.63 E-value=2.2e-15 Score=147.10 Aligned_cols=90 Identities=18% Similarity=0.243 Sum_probs=75.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHcc----CCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEE
Q 048654 315 GRPTKSFSGGWRMRISLARALFV----QPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~----~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii 388 (723)
.+++..||||||||++||++|+. +|++|||||||++||+.++..+.++|+++ +.++|+|||+...+ .+||+|+
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~i~ 137 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADKII 137 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEE
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCEEE
Confidence 46788999999999999999974 46999999999999999999999999876 46899999998765 5799998
Q ss_pred EE--eCCEEEEecCChhhH
Q 048654 389 HL--HDQKLHFYRGNFDDF 405 (723)
Q Consensus 389 ~L--~~G~i~~~~g~~~~~ 405 (723)
.+ .+|....+..+.+.+
T Consensus 138 ~v~~~~g~s~~~~~~~~~~ 156 (173)
T 3kta_B 138 GVSMRDGVSKVVSLSLEKA 156 (173)
T ss_dssp EEEEETTEEEEEECCHHHH
T ss_pred EEEecCCEEEEEEEEcHHH
Confidence 55 578765555555444
No 175
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.62 E-value=4.9e-16 Score=156.77 Aligned_cols=164 Identities=12% Similarity=0.066 Sum_probs=103.1
Q ss_pred cceeceEE-EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCC
Q 048654 511 FKLSDVDV-GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPD 589 (723)
Q Consensus 511 ~~L~~isl-~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~ 589 (723)
..|+++.+ .|.+|++++|+||||||||||++.|++...+.+|.|.+.. ... .. .............
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~--------~~~----~~-~~~~~~~~~~~~~ 76 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT--------TEE----SR-DSIIRQAKQFNWD 76 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE--------SSS----CH-HHHHHHHHHTTCC
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE--------ccc----CH-HHHHHHHHHhcch
Confidence 46788887 7999999999999999999999999998877777664321 110 00 0000111000000
Q ss_pred CCCCcHH--HHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC--eEEeccCCCCC--CHHHHHHHHHHHH
Q 048654 590 QEGLSKQ--EAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH--ILLLDEPTNHL--DMQSIDALADALD 663 (723)
Q Consensus 590 ~~~~~~~--~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~--lLlLDEPT~~L--D~~s~~~l~~~L~ 663 (723)
....... ..+......++ . . ......|.++.++...+.+...+|+ +||+||||+.+ |+.....+.+.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~-~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~ 151 (235)
T 2w0m_A 77 FEEYIEKKLIIIDALMKEKE-D-Q---WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLK 151 (235)
T ss_dssp CGGGBTTTEEEEECCC-----C-T---TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHH
T ss_pred HHHHhhCCEEEEeccccccC-c-e---eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHH
Confidence 0000000 00000000001 0 0 1123459999999888888888999 99999999888 9888777777776
Q ss_pred Hc----CceEEEEecCH--------HHHHHhcCcCCCcEEEEEECC
Q 048654 664 EF----TGGVVLVSHDS--------RLISRVCDDEERSEIWVVENG 697 (723)
Q Consensus 664 ~~----~~tVIivSHD~--------~~~~~~~d~~~~drv~vl~~G 697 (723)
++ +.+||++||+. ..+..+|| +|++|+..
T Consensus 152 ~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d-----~vi~l~~~ 192 (235)
T 2w0m_A 152 RVLNKWNFTIYATSQYAITTSQAFGFGVEHVAD-----GIIRFRRM 192 (235)
T ss_dssp HHHHHTTEEEEEEEC-----------CHHHHCS-----EEEEEEEE
T ss_pred HHHHhCCCeEEEEeccCcccccccccchheeee-----EEEEEEEE
Confidence 54 56999999999 55888885 89999753
No 176
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.61 E-value=2.2e-17 Score=169.96 Aligned_cols=164 Identities=11% Similarity=0.065 Sum_probs=85.5
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCC-CCCC--CcEEEEEeeeeecCCChHHHHHHHHhhHHHHH
Q 048654 175 ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK-IPVP--KNIDVLLVEQEVVGDDRSAIQAVVSAHEELVK 251 (723)
Q Consensus 175 y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~-~~~~--~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~ 251 (723)
-+++++|+|+||++++|+++||+||||||||||+++|+|+. ...- ....+.++.++......+....
T Consensus 9 ~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~---------- 78 (245)
T 2jeo_A 9 SGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQK---------- 78 (245)
T ss_dssp --------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHH----------
T ss_pred CCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHh----------
Confidence 36678999999999999999999999999999999999852 1100 0012233333211111111000
Q ss_pred HHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHH
Q 048654 252 LREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISL 331 (723)
Q Consensus 252 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaL 331 (723)
.......... ..+ . ......+.+.|+.+. .....++..||+||+||+++
T Consensus 79 ----~~~~~~~~~~---~~~--~-------------------~~~~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r~~~ 127 (245)
T 2jeo_A 79 ----AKALKGQYNF---DHP--D-------------------AFDNDLMHRTLKNIV---EGKTVEVPTYDFVTHSRLPE 127 (245)
T ss_dssp ----HHHHTTCCCT---TSG--G-------------------GBCHHHHHHHHHHHH---TTCCEEECCEETTTTEECSS
T ss_pred ----hhhhccCCCC---CCc--c-------------------cccHHHHHHHHHHHH---CCCCeecccccccccCccCc
Confidence 0000000000 000 0 000112233344331 12246678999999999988
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCC-HHHHHhhCCEE
Q 048654 332 ARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHD-RDFLNTVCTEI 387 (723)
Q Consensus 332 ArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHd-l~~l~~iad~I 387 (723)
++++.+|++||||||+..++.. +.+ ..+.+|+++||+ ......+++++
T Consensus 128 -~~~~~~~~~lilDg~~~~~~~~----l~~---~~~~~i~v~th~~~~~~r~~~r~~ 176 (245)
T 2jeo_A 128 -TTVVYPADVVLFEGILVFYSQE----IRD---MFHLRLFVDTDSDVRLSRRVLRDV 176 (245)
T ss_dssp -CEEECCCSEEEEECTTTTTSHH----HHT---TCSEEEEEECCHHHHHHHHHHHHT
T ss_pred -eEEecCCCEEEEeCccccccHH----HHH---hcCeEEEEECCHHHHHHHHHHHHH
Confidence 6889999999999999888864 211 136799999997 44445555544
No 177
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.60 E-value=1.1e-16 Score=159.36 Aligned_cols=166 Identities=19% Similarity=0.163 Sum_probs=97.7
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCcceEEECCce----eEEEE
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL-----SPTEGEVRRSQKL----RIGRY 565 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~-----~p~~G~I~~~~~~----~ig~~ 565 (723)
+|+++|++|.|+. .++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|.+...+.. .+..+
T Consensus 3 ~l~~~~~~~~~~~---~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 3 NLNYQQTHFVMSA---PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp --------CEEEE---SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred chhhhhhhheeec---CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 5789999999962 46777 889999999999999999999999999998 7888876532110 01010
Q ss_pred --ccccccccCcc-----ccHHHHHHhhCCC----------CCCCc-HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHH
Q 048654 566 --SQHFVDLLTME-----ETPVSYLLRLHPD----------QEGLS-KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKAR 627 (723)
Q Consensus 566 --~q~~~~~~~~~-----~~~~~~~~~~~~~----------~~~~~-~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqR 627 (723)
+-......... ...+......... ..... ....+..++..++++......++..+|+||+||
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~ 157 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKA 157 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHH
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHH
Confidence 00000000000 0001111110000 00111 223456677778876433234568899999999
Q ss_pred -HHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc
Q 048654 628 -VVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF 665 (723)
Q Consensus 628 -v~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~ 665 (723)
+.++++++.+|.++++||||+++|..+...+.+.|.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 158 QLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999998775
No 178
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.60 E-value=4.5e-18 Score=170.47 Aligned_cols=145 Identities=12% Similarity=0.003 Sum_probs=102.8
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHH
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAV 599 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (723)
..+|++++|+||||||||||+++|+|++.| .+++++|.....-....+........+.. .+......+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 70 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----------RVALLPMDHYYKDLGHLPLEERLRVNYDH-PDAFDLALY 70 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----------GEEEEEGGGCBCCCTTSCHHHHHHSCTTS-GGGBCHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----------CeEEEecCccccCcccccHHHhcCCCCCC-hhhhhHHHH
Confidence 468999999999999999999999998875 47788876421100111111111111111 111134557
Q ss_pred HHHHHhCCCCCCCCcCCCCCCCHHH----HHHHHHHHHHccCCCeEEeccCCCC-------CCHHHHHHHHHHHHHc---
Q 048654 600 RAKLGKFGLPSHNHLTPIAKLSGGQ----KARVVFTSISMSKPHILLLDEPTNH-------LDMQSIDALADALDEF--- 665 (723)
Q Consensus 600 ~~~L~~~gl~~~~~~~~i~~LSGGq----kqRv~lAral~~~p~lLlLDEPT~~-------LD~~s~~~l~~~L~~~--- 665 (723)
.+++..+++..... +|+..+|+|+ +||+++|++++.+|.+|++||||++ ||+.....+.+.+.+.
T Consensus 71 ~~~l~~~~~~~~~~-~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~ 149 (211)
T 3asz_A 71 LEHAQALLRGLPVE-MPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLE 149 (211)
T ss_dssp HHHHHHHHTTCCEE-ECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcC-CCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 77888888765443 5788999996 4788999999999999999999999 9998888888877654
Q ss_pred -CceEEEEecCHH
Q 048654 666 -TGGVVLVSHDSR 677 (723)
Q Consensus 666 -~~tVIivSHD~~ 677 (723)
+.++++++|+..
T Consensus 150 ~g~t~~~~~~~~~ 162 (211)
T 3asz_A 150 RGRSLEGVVAQYL 162 (211)
T ss_dssp SCCCHHHHHHHHH
T ss_pred hCCCHHHHHHHHH
Confidence 568899999853
No 179
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.59 E-value=4.9e-17 Score=161.21 Aligned_cols=82 Identities=12% Similarity=0.083 Sum_probs=61.5
Q ss_pred CCCCCCCChHHHHHH-HHHH---HHccCCCEEEEeC--CCCCCCHHHHHHHHHHHhhcCcEEE---EEeCCHHHHHhhCC
Q 048654 315 GRPTKSFSGGWRMRI-SLAR---ALFVQPTLLLLDE--PTNHLDLRAVLWLEEYLCRWKKTLV---VVSHDRDFLNTVCT 385 (723)
Q Consensus 315 ~~~~~~LSGGqrQRv-aLAr---AL~~~P~lLLLDE--PT~~LD~~~~~~L~~~L~~~~~TVI---ivsHdl~~l~~iad 385 (723)
+++...+|+|||+++ +|++ |++.+|+|||||| |++.+|+.....|.++|.....+|| .||||.+ ..++|
T Consensus 78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~--~~~vd 155 (189)
T 2i3b_A 78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKP--LALVE 155 (189)
T ss_dssp SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSC--CTTHH
T ss_pred ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCc--hHHHH
Confidence 455667999999998 4455 6899999999999 9999999999999999987644443 4559873 23444
Q ss_pred EEEEEeCCEEEEe
Q 048654 386 EIIHLHDQKLHFY 398 (723)
Q Consensus 386 ~Ii~L~~G~i~~~ 398 (723)
+|..+++|+|+..
T Consensus 156 ~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 156 EIRNRKDVKVFNV 168 (189)
T ss_dssp HHHTTCCSEEEEC
T ss_pred HHeecCCcEEEEe
Confidence 5555577777643
No 180
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.57 E-value=5.6e-15 Score=154.88 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=55.9
Q ss_pred HHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC--CCCHHH---HHHHHHHHh----hcCcEE
Q 048654 300 ASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTN--HLDLRA---VLWLEEYLC----RWKKTL 370 (723)
Q Consensus 300 ~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~--~LD~~~---~~~L~~~L~----~~~~TV 370 (723)
+..+++.+++.+ ..++++..||+||.|++ ++++.+|++|||||||+ ++|... ...+.+.|. +.+.||
T Consensus 99 ~~~~~~~l~l~~-~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tv 174 (279)
T 1nlf_A 99 RQAVADGLLIQP-LIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSI 174 (279)
T ss_dssp HHHHHHHEEECC-CTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEE
T ss_pred hhhccCceEEee-cCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEE
Confidence 445677777754 34678999999997765 68889999999999999 999732 344444443 457899
Q ss_pred EEEeCCHHHHH
Q 048654 371 VVVSHDRDFLN 381 (723)
Q Consensus 371 IivsHdl~~l~ 381 (723)
|+|+|+.....
T Consensus 175 i~i~H~~~~~~ 185 (279)
T 1nlf_A 175 VFLHHASKGAA 185 (279)
T ss_dssp EEEEEC-----
T ss_pred EEEecCCCccc
Confidence 99999987654
No 181
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.57 E-value=1.7e-14 Score=140.68 Aligned_cols=93 Identities=23% Similarity=0.319 Sum_probs=75.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHcc----CCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCC
Q 048654 615 TPIAKLSGGQKARVVFTSISMS----KPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEER 688 (723)
Q Consensus 615 ~~i~~LSGGqkqRv~lAral~~----~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~ 688 (723)
+++..||||||||++||++|+. +|+++||||||++||+.+...+.++|+++. .++|+|||+...+ .+||
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad---- 134 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANAD---- 134 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCS----
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCC----
Confidence 5678999999999999999974 569999999999999999999999999874 5899999998764 5774
Q ss_pred cEEEEE--ECCeEEecCCCHHHHHHHH
Q 048654 689 SEIWVV--ENGTVSRFPGTFEEYKEDL 713 (723)
Q Consensus 689 drv~vl--~~G~i~~~~g~~~~~~~~~ 713 (723)
+++.+ .+|....+..+.+++.+..
T Consensus 135 -~i~~v~~~~g~s~~~~~~~~~~~~~~ 160 (173)
T 3kta_B 135 -KIIGVSMRDGVSKVVSLSLEKAMKIL 160 (173)
T ss_dssp -EEEEEEEETTEEEEEECCHHHHHHHH
T ss_pred -EEEEEEecCCEEEEEEEEcHHHHHHH
Confidence 88855 5786655555666655433
No 182
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.57 E-value=4.6e-16 Score=154.94 Aligned_cols=179 Identities=13% Similarity=0.131 Sum_probs=96.8
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCC-----CCCCCcEEE----EEee-eee---
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK-----IPVPKNIDV----LLVE-QEV--- 231 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~-----~~~~~~~~i----~~~~-q~~--- 231 (723)
+|+++|++|.|+ .++|++ |.+.+|.+++|+|+||||||||++.|+|.. .+.+|...+ .+.+ ..+
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt 79 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence 488999999997 577887 889999999999999999999999999876 333332211 0101 111
Q ss_pred cCCChHHHHHHHHhhHHHHHHHHHHHh-hhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCC
Q 048654 232 VGDDRSAIQAVVSAHEELVKLREEVAS-LQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFT 310 (723)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~ 310 (723)
.+....... .. ....+...+.. ++......... .... .. ........++..++...++.
T Consensus 80 ~G~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~-~v~d--~~------------~~~~~~~~~~~~~~~~~~~~ 139 (210)
T 1pui_A 80 PGYGYAEVP---EE--MKRKWQRALGEYLEKRQSLQGLV-VLMD--IR------------HPLKDLDQQMIEWAVDSNIA 139 (210)
T ss_dssp CCCC---------C--CHHHHHHHHHHHHHHCTTEEEEE-EEEE--TT------------SCCCHHHHHHHHHHHHTTCC
T ss_pred cCCcccccC---HH--HHHHHHHHHHHHHHhhhcccEEE-EEEE--CC------------CCCchhHHHHHHHHHHcCCC
Confidence 111100000 00 00000111111 11000000000 0000 00 00001122344556667776
Q ss_pred ccccCCCCCCCChHHHHH-HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q 048654 311 KEMQGRPTKSFSGGWRMR-ISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW 366 (723)
Q Consensus 311 ~~~~~~~~~~LSGGqrQR-vaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~ 366 (723)
......++..+|+||+|| +.++++++.+|.++++|||||+||..++..+.+.|.++
T Consensus 140 ~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 140 VLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp EEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred eEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 433356778899999999 89999999999999999999999999999998888754
No 183
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.56 E-value=7.5e-17 Score=171.42 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=75.4
Q ss_pred EEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcC-CCCCcceEEECCc--------eeEEEEcccc
Q 048654 499 IEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGD-LSPTEGEVRRSQK--------LRIGRYSQHF 569 (723)
Q Consensus 499 ~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl-~~p~~G~I~~~~~--------~~ig~~~q~~ 569 (723)
.||++.|++. .++++++|+| +|+||||+|||||+++|+|. +.|++| |...+. ..+++++|..
T Consensus 2 ~~l~~~~~~~--~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~ 72 (301)
T 2qnr_A 2 SNLPNQVHRK--SVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEER 72 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC--
T ss_pred CCCcceECCE--EEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCC
Confidence 4788999753 5899999998 99999999999999999998 888888 543221 1245555532
Q ss_pred --ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCC
Q 048654 570 --VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPT 647 (723)
Q Consensus 570 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT 647 (723)
...+++.+++-... .... .... ...+..+... ....+.++|||||||+.+||+++ +|++||||
T Consensus 73 ~~~~~ltv~Dt~g~~~-~~~~-~e~~--~~l~~~l~~~-------~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt 137 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGD-AINC-RDCF--KTIISYIDEQ-------FERYLHDESGLNRRHIIDNRVHC----CFYFISPF 137 (301)
T ss_dssp -CCEEEEEEEEC-------------C--TTHHHHHHHH-------HHHHHHHHTSSCCTTCCCCCCCE----EEEEECSS
T ss_pred CcccCcchhhhhhhhh-hcCc-HHHH--HHHHHHHHHH-------HHHHHHHhCHHhhhhhhhhhhhh----eeeeecCc
Confidence 12233333322110 0000 0000 0011111111 12345789999999999999986 99999999
Q ss_pred CC-CCHHHHHHHHHHHHH-cCceEEEEecCHH
Q 048654 648 NH-LDMQSIDALADALDE-FTGGVVLVSHDSR 677 (723)
Q Consensus 648 ~~-LD~~s~~~l~~~L~~-~~~tVIivSHD~~ 677 (723)
++ ||+.... ++..+.. .+.++|+++||+.
T Consensus 138 ~~~Ld~~~~~-~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 138 GHGLKPLDVA-FMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSCCHHHHH-HHHHHTTTSCEEEEECCGGGS
T ss_pred ccCCCHHHHH-HHHHHHhcCCEEEEEEeCCCC
Confidence 85 9998753 3333332 2457899999973
No 184
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.56 E-value=8.8e-15 Score=153.37 Aligned_cols=147 Identities=16% Similarity=0.090 Sum_probs=92.9
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC----ceeEEEEccccccccCccccHHHHHHhhCCCCCCCc
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ----KLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLS 594 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~----~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (723)
.|.+|++++|+||||||||||++.|++.+. .|.+.... ...+.|+..... . ......+.......
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~----~-~~~~~r~~~~g~~~---- 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDP----P-TAIHHRLHALGAHL---- 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSC----H-HHHHHHHHHHHTTS----
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCC----H-HHHHHHHHHHHhhc----
Confidence 378999999999999999999999998654 34442210 123445433210 0 00111111111111
Q ss_pred HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCC--CCCHHH---HHHHHHHHHH----c
Q 048654 595 KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTN--HLDMQS---IDALADALDE----F 665 (723)
Q Consensus 595 ~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~--~LD~~s---~~~l~~~L~~----~ 665 (723)
.......+++.+++.... .+++..||+||.+++ ++++.+|++|||||||+ ++|... ...++..|.. .
T Consensus 95 ~~~~~~~~~~~l~l~~~~-~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~ 170 (279)
T 1nlf_A 95 SAEERQAVADGLLIQPLI-GSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADT 170 (279)
T ss_dssp CHHHHHHHHHHEEECCCT-TSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhccCceEEeecC-CCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHc
Confidence 123355677888876544 356789999997765 67888999999999999 999743 3555555544 4
Q ss_pred CceEEEEecCHHHHH
Q 048654 666 TGGVVLVSHDSRLIS 680 (723)
Q Consensus 666 ~~tVIivSHD~~~~~ 680 (723)
+.|||+|||+.....
T Consensus 171 g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 171 GCSIVFLHHASKGAA 185 (279)
T ss_dssp CCEEEEEEEC-----
T ss_pred CCEEEEEecCCCccc
Confidence 579999999988763
No 185
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.55 E-value=5.3e-16 Score=168.39 Aligned_cols=143 Identities=19% Similarity=0.179 Sum_probs=91.6
Q ss_pred EEEEEcCCCcccceeceEE-------EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-cceEEECCceeEEEEcccccc
Q 048654 500 EVSFSYPNREDFKLSDVDV-------GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT-EGEVRRSQKLRIGRYSQHFVD 571 (723)
Q Consensus 500 ~ls~~y~~~~~~~L~~isl-------~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~-~G~I~~~~~~~ig~~~q~~~~ 571 (723)
.++++|.....+.|+++.+ .+.+|++++|+|||||||||||++|+|+++|+ .|.|...... +.+..+....
T Consensus 93 ~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~-~e~~~~~~~~ 171 (356)
T 3jvv_A 93 GAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDP-IEFVHESKKC 171 (356)
T ss_dssp EEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSSS
T ss_pred EEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCc-HHhhhhcccc
Confidence 4555553333344566655 67888999999999999999999999999987 5666422110 0000000000
Q ss_pred ccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCC
Q 048654 572 LLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLD 651 (723)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD 651 (723)
. +.+. .++ ...++-.+ +||++|..+|++||||||| |
T Consensus 172 ~--v~q~--------------------------~~~---------~~~~~~~~----~La~aL~~~PdvillDEp~---d 207 (356)
T 3jvv_A 172 L--VNQR--------------------------EVH---------RDTLGFSE----ALRSALREDPDIILVGEMR---D 207 (356)
T ss_dssp E--EEEE--------------------------EBT---------TTBSCHHH----HHHHHTTSCCSEEEESCCC---S
T ss_pred c--eeee--------------------------eec---------cccCCHHH----HHHHHhhhCcCEEecCCCC---C
Confidence 0 0000 000 01122222 9999999999999999999 8
Q ss_pred HHHHHHHHHHHHHcCceEEEEecCHHHHHHhcCcCCCcEEEEE
Q 048654 652 MQSIDALADALDEFTGGVVLVSHDSRLISRVCDDEERSEIWVV 694 (723)
Q Consensus 652 ~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d~~~~drv~vl 694 (723)
.++...+.++.. .+.+||+++|+.+.+ .+|| |+++|
T Consensus 208 ~e~~~~~~~~~~-~G~~vl~t~H~~~~~-~~~d-----Rli~l 243 (356)
T 3jvv_A 208 LETIRLALTAAE-TGHLVFGTLHTTSAA-KTID-----RVVDV 243 (356)
T ss_dssp HHHHHHHHHHHH-TTCEEEEEESCSSHH-HHHH-----HHHHT
T ss_pred HHHHHHHHHHHh-cCCEEEEEEccChHH-HHHH-----HHhhh
Confidence 888776666543 367899999999987 5663 66655
No 186
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.54 E-value=4.5e-15 Score=176.25 Aligned_cols=161 Identities=15% Similarity=0.123 Sum_probs=95.8
Q ss_pred ceEEEeEEEEe-----CCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHH
Q 048654 165 DITIDNFSVAA-----RGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAI 239 (723)
Q Consensus 165 ~I~l~nls~~y-----~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~ 239 (723)
.|.+++..--. +++.+++|++|+ ++|++++|+||||||||||||+|+|+.... ..|. ++.. ...
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q~G~--~vpa----~~~--- 645 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-YIGS--YVPA----QKV--- 645 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-TTTC--CBSS----SEE---
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-hcCc--ccch----hcc---
Confidence 46666543221 456799999999 999999999999999999999999852110 0000 0000 000
Q ss_pred HHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCC
Q 048654 240 QAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTK 319 (723)
Q Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 319 (723)
.++.+.+ ++..+|..+.. ....+
T Consensus 646 ---------------~i~~~~~-----------------------------------------i~~~~~~~d~l-~~~~s 668 (800)
T 1wb9_A 646 ---------------EIGPIDR-----------------------------------------IFTRVGAADDL-ASGRS 668 (800)
T ss_dssp ---------------EECCCCE-----------------------------------------EEEEEC-----------
T ss_pred ---------------cceeHHH-----------------------------------------HHhhCCHHHHH-Hhhhh
Confidence 0000000 00111111111 12334
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHH----HHHHHHHhh-cCcEEEEEeCCHHHHHhhCCEEEEEeCCE
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAV----LWLEEYLCR-WKKTLVVVSHDRDFLNTVCTEIIHLHDQK 394 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~----~~L~~~L~~-~~~TVIivsHdl~~l~~iad~Ii~L~~G~ 394 (723)
++|+++++ ++.+..++.+|+||||||||+|+|+... ..+.+.|.+ .+.++|++||+.+++. +||++..+.+|+
T Consensus 669 tf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~-l~d~~~~v~n~~ 746 (800)
T 1wb9_A 669 TFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ-LPEKMEGVANVH 746 (800)
T ss_dssp -CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG-HHHHSTTEEEEE
T ss_pred hhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHH-HhhhhhceEEEE
Confidence 67777765 4555557999999999999888887433 334555555 4789999999998764 788776666555
Q ss_pred E
Q 048654 395 L 395 (723)
Q Consensus 395 i 395 (723)
+
T Consensus 747 ~ 747 (800)
T 1wb9_A 747 L 747 (800)
T ss_dssp E
T ss_pred E
Confidence 4
No 187
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.54 E-value=2.7e-17 Score=172.13 Aligned_cols=60 Identities=13% Similarity=0.145 Sum_probs=48.5
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHH
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFL 380 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l 380 (723)
..+.+|||||+|||+||||++. +++|||||.+||+.....+. .|.+. .+||+|.|..+.+
T Consensus 94 ~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~-~L~~~-~~vI~Vi~K~D~l 153 (270)
T 3sop_A 94 FLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMK-HLSKV-VNIIPVIAKADTM 153 (270)
T ss_dssp HHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHH-HHHTT-SEEEEEETTGGGS
T ss_pred hhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHH-HHHhc-CcEEEEEeccccC
Confidence 4456899999999999999987 99999999999998855444 45554 7888888875543
No 188
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.54 E-value=7.8e-15 Score=147.05 Aligned_cols=150 Identities=18% Similarity=0.114 Sum_probs=94.3
Q ss_pred eeeEeeeE-EEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHH
Q 048654 179 ELLKSTSV-RISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA 257 (723)
Q Consensus 179 ~vL~~isl-~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 257 (723)
+.|+.+.. -|++|++++|+||||||||||++.|++ .++ ..+.|+..+.. ..... +.....
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~----~~~-~~v~~i~~~~~-~~~~~-------------~~~~~~ 67 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL----LSG-KKVAYVDTEGG-FSPER-------------LVQMAE 67 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH----HHC-SEEEEEESSCC-CCHHH-------------HHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH----HcC-CcEEEEECCCC-CCHHH-------------HHHHHH
Confidence 34555554 689999999999999999999999997 122 34445443211 01110 000000
Q ss_pred hhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH--HHHHHHHHHH
Q 048654 258 SLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW--RMRISLARAL 335 (723)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq--rQRvaLArAL 335 (723)
. .+.. ..++++.+. +..+|+++ +++++.++++
T Consensus 68 ---~-----------------------------~~~~-----~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l 101 (220)
T 2cvh_A 68 ---T-----------------------------RGLN-----PEEALSRFI---------LFTPSDFKEQRRVIGSLKKT 101 (220)
T ss_dssp ---T-----------------------------TTCC-----HHHHHHHEE---------EECCTTTSHHHHHHHHHHHH
T ss_pred ---h-----------------------------cCCC-----hHHHhhcEE---------EEecCCHHHHHHHHHHHHHH
Confidence 0 0000 001222221 12334443 6788889999
Q ss_pred ccC-CCEEEEeCCCCCCCHH--------HHHHH----HHHHhhcCcEEEEEeCCHH-------------HHHhhCCEEEE
Q 048654 336 FVQ-PTLLLLDEPTNHLDLR--------AVLWL----EEYLCRWKKTLVVVSHDRD-------------FLNTVCTEIIH 389 (723)
Q Consensus 336 ~~~-P~lLLLDEPT~~LD~~--------~~~~L----~~~L~~~~~TVIivsHdl~-------------~l~~iad~Ii~ 389 (723)
+.+ |++||+||||+.||+. ....+ .++.++.+.|||+++|... .+..+||.|++
T Consensus 102 ~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~ 181 (220)
T 2cvh_A 102 VDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILR 181 (220)
T ss_dssp CCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEE
T ss_pred hhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEE
Confidence 986 9999999999999973 22333 3333445789999999865 67889999999
Q ss_pred EeCC
Q 048654 390 LHDQ 393 (723)
Q Consensus 390 L~~G 393 (723)
|+..
T Consensus 182 l~~~ 185 (220)
T 2cvh_A 182 LDKL 185 (220)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9854
No 189
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.53 E-value=8.6e-15 Score=166.93 Aligned_cols=78 Identities=22% Similarity=0.265 Sum_probs=70.9
Q ss_pred CCCCCC-ChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhhCCEEEEE
Q 048654 316 RPTKSF-SGGWRMRISLARALFVQP--TLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTVCTEIIHL 390 (723)
Q Consensus 316 ~~~~~L-SGGqrQRvaLArAL~~~P--~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~iad~Ii~L 390 (723)
+++..| ||||+|||+||+||+.+| ++|||||||+|||+.+...|.++|+++ +.|||+|||+++++. +||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 467788 999999999999999999 999999999999999999999988765 679999999999886 69999999
Q ss_pred eCCE
Q 048654 391 HDQK 394 (723)
Q Consensus 391 ~~G~ 394 (723)
+++.
T Consensus 471 ~~~~ 474 (517)
T 4ad8_A 471 EKQV 474 (517)
T ss_dssp ECCE
T ss_pred eccc
Confidence 6553
No 190
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.53 E-value=1.8e-15 Score=179.78 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=85.6
Q ss_pred ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-CCcceEEECCceeEEEEccccccccCccccHHHHHHhhCC
Q 048654 510 DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-PTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHP 588 (723)
Q Consensus 510 ~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~ 588 (723)
..+++|++|+ .+|++++|+||||||||||||+|+|+.. ...|.........++++.|.+.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~------------------ 655 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFT------------------ 655 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEE------------------
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcccchhcccceeHHHHHh------------------
Confidence 3589999999 9999999999999999999999999743 2233211111112333322110
Q ss_pred CCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHH----HHHHHHH
Q 048654 589 DQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDA----LADALDE 664 (723)
Q Consensus 589 ~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~----l~~~L~~ 664 (723)
.++...... ....++|+|+++ ++.+..++.+|+||||||||+|+|+..... +.+.|.+
T Consensus 656 ----------------~~~~~d~l~-~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~ 717 (800)
T 1wb9_A 656 ----------------RVGAADDLA-SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLAN 717 (800)
T ss_dssp ----------------EEC------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHH
T ss_pred ----------------hCCHHHHHH-hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHh
Confidence 011111110 122457777765 444455689999999999988888755443 3444444
Q ss_pred -cCceEEEEecCHHHHHHhcC
Q 048654 665 -FTGGVVLVSHDSRLISRVCD 684 (723)
Q Consensus 665 -~~~tVIivSHD~~~~~~~~d 684 (723)
.+.+||++|||.+++. +||
T Consensus 718 ~~g~~vl~~TH~~el~~-l~d 737 (800)
T 1wb9_A 718 KIKALTLFATHYFELTQ-LPE 737 (800)
T ss_dssp TTCCEEEEECSCGGGGG-HHH
T ss_pred ccCCeEEEEeCCHHHHH-Hhh
Confidence 3578999999998764 774
No 191
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.51 E-value=1.4e-17 Score=166.94 Aligned_cols=144 Identities=19% Similarity=0.090 Sum_probs=94.1
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCC
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDG 267 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 267 (723)
.++|+++||+||||||||||+++|+|++.+ .+.++.++.......... ..........
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-----~i~~v~~d~~~~~~~~~~-----------~~~~~~~~~~------ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-----RVALLPMDHYYKDLGHLP-----------LEERLRVNYD------ 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-----GEEEEEGGGCBCCCTTSC-----------HHHHHHSCTT------
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-----CeEEEecCccccCccccc-----------HHHhcCCCCC------
Confidence 578999999999999999999999987432 244455443211100000 0000000000
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH----HHHHHHHHHHccCCCEEE
Q 048654 268 EEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW----RMRISLARALFVQPTLLL 343 (723)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq----rQRvaLArAL~~~P~lLL 343 (723)
........++.++++.+++.... .+++..+|+|+ +||+++|++++.+|.+|+
T Consensus 61 -----------------------~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~ 116 (211)
T 3asz_A 61 -----------------------HPDAFDLALYLEHAQALLRGLPV-EMPVYDFRAYTRSPRRTPVRPAPVVILEGILVL 116 (211)
T ss_dssp -----------------------SGGGBCHHHHHHHHHHHHTTCCE-EECCEETTTTEECSSCEEECCCSEEEEESTTTT
T ss_pred -----------------------ChhhhhHHHHHHHHHHHHcCCCc-CCCcccCcccCCCCCeEEeCCCcEEEEeehhhc
Confidence 00000123344556666665433 46788999997 478899999999999999
Q ss_pred EeCCCCC-------CCHHHHHHHHHHHhhc----CcEEEEEeCCH
Q 048654 344 LDEPTNH-------LDLRAVLWLEEYLCRW----KKTLVVVSHDR 377 (723)
Q Consensus 344 LDEPT~~-------LD~~~~~~L~~~L~~~----~~TVIivsHdl 377 (723)
+||||++ ||+.....+.+.+.+. +.|+++++|+.
T Consensus 117 ~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 117 YPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp SSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred cCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999 8998888777777543 77999999985
No 192
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.50 E-value=3.2e-15 Score=158.90 Aligned_cols=161 Identities=16% Similarity=0.096 Sum_probs=93.0
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc-----------------eeEEEEccccccccCccccHHHHHH
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK-----------------LRIGRYSQHFVDLLTMEETPVSYLL 584 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~-----------------~~ig~~~q~~~~~~~~~~~~~~~~~ 584 (723)
+|++++|+||||||||||+++|+|+++|++|+|.+.+. ..+++++|.... ....+....+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~--~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGT--DSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTC--CHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCC--CHHHHHHHHHH
Confidence 68999999999999999999999999999999987542 124555554210 00000000000
Q ss_pred hhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC--eEEeccCCCCCCHHHHHHHHHHH
Q 048654 585 RLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH--ILLLDEPTNHLDMQSIDALADAL 662 (723)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~--lLlLDEPT~~LD~~s~~~l~~~L 662 (723)
... ..+. . ..+++..|+.+. ....++..++||++|||+++.+|+ +|.|| |+++.+.. ..+..+-
T Consensus 179 ~~~--~~~~-d----~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~--~~~~~~~ 244 (304)
T 1rj9_A 179 AMK--ARGY-D----LLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGL--EQAKKFH 244 (304)
T ss_dssp HHH--HHTC-S----EEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHH--HHHHHHH
T ss_pred HHH--hCCC-C----EEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHH--HHHHHHH
Confidence 000 0000 0 001222333211 112345666999999999999999 67777 66666532 2333333
Q ss_pred HHcCceEEEEecCHHH-----HHHhcCcCCCcEEEEEECCeE
Q 048654 663 DEFTGGVVLVSHDSRL-----ISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 663 ~~~~~tVIivSHD~~~-----~~~~~d~~~~drv~vl~~G~i 699 (723)
...+.|+|+|||+... +..++. ...--|.++..|+-
T Consensus 245 ~~~~~t~iivTh~d~~a~gg~~l~i~~-~~~~pi~~ig~Ge~ 285 (304)
T 1rj9_A 245 EAVGLTGVIVTKLDGTAKGGVLIPIVR-TLKVPIKFVGVGEG 285 (304)
T ss_dssp HHHCCSEEEEECTTSSCCCTTHHHHHH-HHCCCEEEEECSSS
T ss_pred HHcCCcEEEEECCcccccccHHHHHHH-HHCCCeEEEeCCCC
Confidence 4456799999998432 111110 01135777877764
No 193
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.49 E-value=1.2e-15 Score=176.95 Aligned_cols=173 Identities=16% Similarity=0.236 Sum_probs=91.8
Q ss_pred CeEEEEEEEEEcCCCcccceece----------EEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC-CcceEEECCce--
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDV----------DVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP-TEGEVRRSQKL-- 560 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~i----------sl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-~~G~I~~~~~~-- 560 (723)
+.+.++|+++.|+....++|+.+ +|+++. ++|+|||||||||||++|+|++.| ++|.|++.+..
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 46789999999975322344444 355553 999999999999999999999988 79999766532
Q ss_pred ------------eEEEEccccc--cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHH
Q 048654 561 ------------RIGRYSQHFV--DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKA 626 (723)
Q Consensus 561 ------------~ig~~~q~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkq 626 (723)
.++|++|... +..++.++ +......++.... .+| ++
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~--------------------i~~~~~~~~~~~~-------~~s---~~ 135 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKE--------------------INKAQNAIAGEGM-------GIS---HE 135 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTT--------------------HHHHHHHHHCSSS-------CCC---SC
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHH--------------------HHHHHHHhcCCcc-------ccc---hH
Confidence 2445554321 10111111 1111111221110 011 11
Q ss_pred HHHHHHHHccCCCeEEeccC------CCCCCHHHHHHHHHHHHHc-----CceEEEEecCHH--------HHHHhcCcCC
Q 048654 627 RVVFTSISMSKPHILLLDEP------TNHLDMQSIDALADALDEF-----TGGVVLVSHDSR--------LISRVCDDEE 687 (723)
Q Consensus 627 Rv~lAral~~~p~lLlLDEP------T~~LD~~s~~~l~~~L~~~-----~~tVIivSHD~~--------~~~~~~d~~~ 687 (723)
++.++.+....|+++|+||| |+|||+.....+.+++.++ ..+++++|||++ ++..+. ...
T Consensus 136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~-~~g 214 (608)
T 3szr_A 136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD-PEG 214 (608)
T ss_dssp CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC-SSC
T ss_pred HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh-hcC
Confidence 22233334558999999999 9999999999999999986 246899999976 333332 122
Q ss_pred CcEEEEEECCeEE
Q 048654 688 RSEIWVVENGTVS 700 (723)
Q Consensus 688 ~drv~vl~~G~i~ 700 (723)
...|.|+.++.++
T Consensus 215 ~rtI~VlTK~Dlv 227 (608)
T 3szr_A 215 DRTIGILTKPDLV 227 (608)
T ss_dssp CSEEEEEECGGGS
T ss_pred CceEEEecchhhc
Confidence 3578888877654
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.48 E-value=2.7e-16 Score=167.08 Aligned_cols=164 Identities=18% Similarity=0.147 Sum_probs=71.5
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhC-CCCCCCcEEEEEeeeeecCCChHHHHHHHHhhH
Q 048654 169 DNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWR-KIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHE 247 (723)
Q Consensus 169 ~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~-~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~ 247 (723)
.||+++|+++.++++++|+| +|||+||+|||||+++|.|. ..+ ..+ +.+.+..+.. +.
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~--~~g-i~~~g~~~~~---t~--------- 60 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP--ERV-ISGAAEKIER---TV--------- 60 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------------
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccC--CCC-cccCCcccCC---cc---------
Confidence 47899999999999999998 99999999999999999986 333 223 3222211110 00
Q ss_pred HHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHH
Q 048654 248 ELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRM 327 (723)
Q Consensus 248 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQ 327 (723)
. ...+.+..+.... .....+.+..... .... ..+.....+..+.+ ..++++.++|||+||
T Consensus 61 ---~-~~~~~~~~q~~~~------~~~ltv~Dt~g~~-~~~~--~~e~~~~l~~~l~~-------~~~~~~~~~sgg~rq 120 (301)
T 2qnr_A 61 ---Q-IEASTVEIEERGV------KLRLTVVDTPGYG-DAIN--CRDCFKTIISYIDE-------QFERYLHDESGLNRR 120 (301)
T ss_dssp --------CEEEEC---C------CEEEEEEEEC--------------CTTHHHHHHH-------HHHHHHHHHTSSCCT
T ss_pred ---e-EeeEEEEecCCCc------ccCcchhhhhhhh-hhcC--cHHHHHHHHHHHHH-------HHHHHHHHhCHHhhh
Confidence 0 0000000000000 0000000000000 0000 00000001111111 123566789999999
Q ss_pred HHHHHHHHccCCCEEEEeCCCCC-CCHHHHHHHHHHHhh-cCcEEEEEeCCHH
Q 048654 328 RISLARALFVQPTLLLLDEPTNH-LDLRAVLWLEEYLCR-WKKTLVVVSHDRD 378 (723)
Q Consensus 328 RvaLArAL~~~P~lLLLDEPT~~-LD~~~~~~L~~~L~~-~~~TVIivsHdl~ 378 (723)
|+.+|||++ +|++||||++ ||+.....+.. +.. .+.++|+++||+.
T Consensus 121 rv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~-l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 121 HIIDNRVHC----CFYFISPFGHGLKPLDVAFMKA-IHNKVNIVPVIAKADTL 168 (301)
T ss_dssp TCCCCCCCE----EEEEECSSSSSCCHHHHHHHHH-HTTTSCEEEEECCGGGS
T ss_pred hhhhhhhhh----eeeeecCcccCCCHHHHHHHHH-HHhcCCEEEEEEeCCCC
Confidence 999999986 9999999985 99988643333 332 3568899999974
No 195
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.48 E-value=4.1e-14 Score=161.34 Aligned_cols=77 Identities=21% Similarity=0.357 Sum_probs=70.0
Q ss_pred CCCCCC-CHHHHHHHHHHHHHccCC--CeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCcCCCc
Q 048654 615 TPIAKL-SGGQKARVVFTSISMSKP--HILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDDEERS 689 (723)
Q Consensus 615 ~~i~~L-SGGqkqRv~lAral~~~p--~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~~~~d 689 (723)
+++..| ||||+|||+||++|+.+| ++|||||||+|||+.+...|.++|+++. .+||+||||++++. +||
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d----- 465 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAH----- 465 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSS-----
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCC-----
Confidence 577888 999999999999999999 9999999999999999999999998873 68999999999886 684
Q ss_pred EEEEEECC
Q 048654 690 EIWVVENG 697 (723)
Q Consensus 690 rv~vl~~G 697 (723)
++++|.++
T Consensus 466 ~~~~~~~~ 473 (517)
T 4ad8_A 466 HHYKVEKQ 473 (517)
T ss_dssp EEEEEECC
T ss_pred EEEEEecc
Confidence 99999554
No 196
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.46 E-value=8.2e-15 Score=162.07 Aligned_cols=156 Identities=16% Similarity=0.095 Sum_probs=88.6
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc--eEEECC-----ceeEEEEc
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG--EVRRSQ-----KLRIGRYS 566 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G--~I~~~~-----~~~ig~~~ 566 (723)
.+|.++||++.|++. .++++++|+| +|+|+||||||||+++|+|+..|..| .+.... ...+++++
T Consensus 10 ~~l~~~~l~~~y~~~--~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~ 81 (418)
T 2qag_C 10 GYVGFANLPNQVYRK--SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLI 81 (418)
T ss_dssp -----CCCCCCTTTT--TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC-
T ss_pred CcEEEEecceeECCE--EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEE
Confidence 468999999999753 5899999998 99999999999999999999875444 111110 12345555
Q ss_pred ccc--ccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCC---eE
Q 048654 567 QHF--VDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPH---IL 641 (723)
Q Consensus 567 q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~---lL 641 (723)
|.. ...+++.+++.... ... . ......+...+. ..++.+++||++|||+++.+|+ +|
T Consensus 82 q~~~~~~~Ltv~Dt~g~~~-~~~-~---~~~~~~i~~~i~-------------~~~~~~l~qr~~IaRal~~d~~~~vlL 143 (418)
T 2qag_C 82 KEGGVQLLLTIVDTPGFGD-AVD-N---SNCWQPVIDYID-------------SKFEDYLNAESRVNRRQMPDNRVQCCL 143 (418)
T ss_dssp -----CEEEEEEECC----------------CHHHHHHHH-------------HHHHHHTTTSCC-CCCCCCCC-CCEEE
T ss_pred ecCCcccceeeeechhhhh-hcc-c---hhhHHHHHHHHH-------------HHHHHHHHHHHHHHHHhccCCCeeEEE
Confidence 532 11233334422110 000 0 000011222221 1355677789999999999999 99
Q ss_pred EeccCC-CCCCHHHHHHHHHHHHHcCceEEEEecCHH
Q 048654 642 LLDEPT-NHLDMQSIDALADALDEFTGGVVLVSHDSR 677 (723)
Q Consensus 642 lLDEPT-~~LD~~s~~~l~~~L~~~~~tVIivSHD~~ 677 (723)
++|||| .+||+..... ++.|.. +.+||+|.|-.+
T Consensus 144 ~ldePt~~~L~~~d~~~-lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 144 YFIAPSGHGLKPLDIEF-MKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp EECCC-CCSCCHHHHHH-HHHHTT-TSEEEEEEESTT
T ss_pred EEecCcccCCCHHHHHH-HHHHhc-cCcEEEEEEccc
Confidence 999999 6999887533 334443 456777777554
No 197
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.46 E-value=9.2e-15 Score=158.60 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=49.9
Q ss_pred HHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 330 SLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 330 aLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
+||+||.++|++||||||| |..+...+.+.. ..|.|||+++|+.+.+ .+|||++.|..
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~~-~~G~~vl~t~H~~~~~-~~~dRli~l~~ 245 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALTAA-ETGHLVFGTLHTTSAA-KTIDRVVDVFP 245 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEESCSSHH-HHHHHHHHTSC
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH-hcCCEEEEEEccChHH-HHHHHHhhhcC
Confidence 9999999999999999999 788777766653 4488999999999988 67999988844
No 198
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.46 E-value=3.1e-14 Score=154.26 Aligned_cols=160 Identities=16% Similarity=0.117 Sum_probs=89.6
Q ss_pred eeeeEee-eEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCc----EEEEEeeeeecCCChHHHHHHHHhhHHHHHH
Q 048654 178 KELLKST-SVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKN----IDVLLVEQEVVGDDRSAIQAVVSAHEELVKL 252 (723)
Q Consensus 178 ~~vL~~i-sl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~----~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l 252 (723)
.+.|+.+ ++.|++|++++|+||||||||||++.|++.....|.. +.+.|++.+.. .....
T Consensus 117 ~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~-~~~~~-------------- 181 (349)
T 1pzn_A 117 SKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT-FRPER-------------- 181 (349)
T ss_dssp CHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC-CCHHH--------------
T ss_pred CHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC-CCHHH--------------
Confidence 3456665 6899999999999999999999999999876322222 46444433211 11110
Q ss_pred HHHHHhh-hcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHH
Q 048654 253 REEVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISL 331 (723)
Q Consensus 253 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaL 331 (723)
+..+ +.... .. ..+++.+-+. +. .-|.+++|++.+
T Consensus 182 ---i~~i~q~~~~--------~~--------------------------~~v~~ni~~~-----~~--~~~~~~~~~l~~ 217 (349)
T 1pzn_A 182 ---IREIAQNRGL--------DP--------------------------DEVLKHIYVA-----RA--FNSNHQMLLVQQ 217 (349)
T ss_dssp ---HHHHHHTTTC--------CH--------------------------HHHGGGEEEE-----EC--CSHHHHHHHHHH
T ss_pred ---HHHHHHHcCC--------CH--------------------------HHHhhCEEEE-----ec--CChHHHHHHHHH
Confidence 1111 11000 00 0111111111 11 126788999999
Q ss_pred HHHHc-------cCCCEEEEeCCCCCCCHHH------------HHHHHHHHh----hcCcEEEEEeCCHHHHHhhCCEEE
Q 048654 332 ARALF-------VQPTLLLLDEPTNHLDLRA------------VLWLEEYLC----RWKKTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 332 ArAL~-------~~P~lLLLDEPT~~LD~~~------------~~~L~~~L~----~~~~TVIivsHdl~~l~~iad~Ii 388 (723)
+++++ .+|++||+||||++||+.. ...+...|. +++.|||+++|.......+++.++
T Consensus 218 ~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~ 297 (349)
T 1pzn_A 218 AEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPT 297 (349)
T ss_dssp HHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-----------
T ss_pred HHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCcc
Confidence 99998 6899999999999999852 234443343 357899999999876654444555
Q ss_pred EEeCCEEE
Q 048654 389 HLHDQKLH 396 (723)
Q Consensus 389 ~L~~G~i~ 396 (723)
++..|+++
T Consensus 298 ~~~~G~~l 305 (349)
T 1pzn_A 298 RPIGGHIL 305 (349)
T ss_dssp ----CCCC
T ss_pred ccCCcceE
Confidence 56666553
No 199
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.45 E-value=1.1e-13 Score=138.74 Aligned_cols=149 Identities=15% Similarity=0.181 Sum_probs=91.7
Q ss_pred ceeceEE-EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCC
Q 048654 512 KLSDVDV-GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQ 590 (723)
Q Consensus 512 ~L~~isl-~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~ 590 (723)
.|+.+.. .|.+|++++|+||||||||||++.|++ . ..+.+ .|+.... .+.. .. +.......
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v--------~~i~~~~--~~~~-~~-~~~~~~~~--- 69 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKV--------AYVDTEG--GFSP-ER-LVQMAETR--- 69 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEE--------EEEESSC--CCCH-HH-HHHHHHTT---
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcE--------EEEECCC--CCCH-HH-HHHHHHhc---
Confidence 4566554 689999999999999999999999999 2 22222 2332111 0110 01 11111111
Q ss_pred CCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHH--HHHHHHHHHHccC-CCeEEeccCCCCCCHHH--------HHHHH
Q 048654 591 EGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQ--KARVVFTSISMSK-PHILLLDEPTNHLDMQS--------IDALA 659 (723)
Q Consensus 591 ~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGq--kqRv~lAral~~~-p~lLlLDEPT~~LD~~s--------~~~l~ 659 (723)
+... ..++..+. +..+|+++ ++++..+++++.+ |++||+||||+.+|... ...+.
T Consensus 70 -~~~~----~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~ 135 (220)
T 2cvh_A 70 -GLNP----EEALSRFI---------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQL 135 (220)
T ss_dssp -TCCH----HHHHHHEE---------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHH
T ss_pred -CCCh----HHHhhcEE---------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHH
Confidence 1111 11222221 23445554 5678888899986 99999999999999732 23333
Q ss_pred HHH----HHcCceEEEEecCHH-------------HHHHhcCcCCCcEEEEEECC
Q 048654 660 DAL----DEFTGGVVLVSHDSR-------------LISRVCDDEERSEIWVVENG 697 (723)
Q Consensus 660 ~~L----~~~~~tVIivSHD~~-------------~~~~~~d~~~~drv~vl~~G 697 (723)
+.| ++.+.+||+++|... .+..+|| +|++|+..
T Consensus 136 ~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d-----~vi~l~~~ 185 (220)
T 2cvh_A 136 QVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCK-----DILRLDKL 185 (220)
T ss_dssp HHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSS-----EEEEEEEC
T ss_pred HHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCc-----EEEEEEEe
Confidence 334 444678999999865 5777884 89998754
No 200
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.43 E-value=3.5e-13 Score=147.20 Aligned_cols=75 Identities=29% Similarity=0.464 Sum_probs=67.8
Q ss_pred CCCCCCChHHHHHH------HHHHHHccC-CCEEEEeCCCCCCCHHHHHHHHHHHhhcC--cEEEEEeCCHHHHHhhCCE
Q 048654 316 RPTKSFSGGWRMRI------SLARALFVQ-PTLLLLDEPTNHLDLRAVLWLEEYLCRWK--KTLVVVSHDRDFLNTVCTE 386 (723)
Q Consensus 316 ~~~~~LSGGqrQRv------aLArAL~~~-P~lLLLDEPT~~LD~~~~~~L~~~L~~~~--~TVIivsHdl~~l~~iad~ 386 (723)
+++..|||||+||| ++|++|+.+ |++|||||||++||+..+..|.+.|.++. .+||+|||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56689999999988 567999999 99999999999999999999999998763 59999999987 5789999
Q ss_pred EEEEe
Q 048654 387 IIHLH 391 (723)
Q Consensus 387 Ii~L~ 391 (723)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 201
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.40 E-value=1.4e-13 Score=149.28 Aligned_cols=141 Identities=18% Similarity=0.225 Sum_probs=89.2
Q ss_pred ceece-EEEEecCcEEEEEcCCCCcHHHHHHHHHcCC--CCCc----ce-EEECCceeEEEEccccccccCccccHHHHH
Q 048654 512 KLSDV-DVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL--SPTE----GE-VRRSQKLRIGRYSQHFVDLLTMEETPVSYL 583 (723)
Q Consensus 512 ~L~~i-sl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~--~p~~----G~-I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~ 583 (723)
.|+.+ ++.|++|++++|+||||||||||++.|++.. +|+. |. |++.+... +. ... +.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~-----------~~-~~~-i~~i 185 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT-----------FR-PER-IREI 185 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC-----------CC-HHH-HHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC-----------CC-HHH-HHHH
Confidence 35554 6789999999999999999999999999998 6766 45 44433210 00 011 1111
Q ss_pred HhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHc-------cCCCeEEeccCCCCCCHHH--
Q 048654 584 LRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISM-------SKPHILLLDEPTNHLDMQS-- 654 (723)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~-------~~p~lLlLDEPT~~LD~~s-- 654 (723)
.... +.... .+++.+-+. .. .-|.+++|++.++++++ .+|++||+||||++||+..
T Consensus 186 ~q~~----~~~~~----~v~~ni~~~-----~~--~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~ 250 (349)
T 1pzn_A 186 AQNR----GLDPD----EVLKHIYVA-----RA--FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIG 250 (349)
T ss_dssp HHTT----TCCHH----HHGGGEEEE-----EC--CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCS
T ss_pred HHHc----CCCHH----HHhhCEEEE-----ec--CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcc
Confidence 1111 11111 222222221 11 12678999999999998 6899999999999999852
Q ss_pred ----------HHHHHHHHHH----cCceEEEEecCHHHHH
Q 048654 655 ----------IDALADALDE----FTGGVVLVSHDSRLIS 680 (723)
Q Consensus 655 ----------~~~l~~~L~~----~~~tVIivSHD~~~~~ 680 (723)
...++..|.. ++.+||+++|+...+.
T Consensus 251 ~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~ 290 (349)
T 1pzn_A 251 RGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPD 290 (349)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccc
Confidence 3444444443 4679999999876554
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.39 E-value=4.9e-15 Score=163.88 Aligned_cols=164 Identities=16% Similarity=0.183 Sum_probs=85.8
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVS 244 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~ 244 (723)
.|.++||+++|+++.+++++||+| +|||+||||||||+++|+|...+.++.+.+............ +.
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~------i~ 78 (418)
T 2qag_C 11 YVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQ------SK 78 (418)
T ss_dssp ----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEE------EE
T ss_pred cEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeee------EE
Confidence 589999999999999999999998 999999999999999999986644432111000000000000 00
Q ss_pred hhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChH
Q 048654 245 AHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGG 324 (723)
Q Consensus 245 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGG 324 (723)
... +........++.+.. + .... . ........+.+.+. ..++.+
T Consensus 79 ~v~------q~~~~~~~Ltv~Dt~--g-----~~~~-------~---~~~~~~~~i~~~i~-------------~~~~~~ 122 (418)
T 2qag_C 79 VLI------KEGGVQLLLTIVDTP--G-----FGDA-------V---DNSNCWQPVIDYID-------------SKFEDY 122 (418)
T ss_dssp CC------------CEEEEEEECC----------------------------CHHHHHHHH-------------HHHHHH
T ss_pred EEE------ecCCcccceeeeech--h-----hhhh-------c---cchhhHHHHHHHHH-------------HHHHHH
Confidence 000 000000011111000 0 0000 0 00000001111111 124456
Q ss_pred HHHHHHHHHHHccCCC---EEEEeCCC-CCCCHHHHHHHHHHHhhcCcEEEEEeCCHH
Q 048654 325 WRMRISLARALFVQPT---LLLLDEPT-NHLDLRAVLWLEEYLCRWKKTLVVVSHDRD 378 (723)
Q Consensus 325 qrQRvaLArAL~~~P~---lLLLDEPT-~~LD~~~~~~L~~~L~~~~~TVIivsHdl~ 378 (723)
++||++|||+++.+|+ ||+||||| ++||+....++.. |.. +.+||+|.|..+
T Consensus 123 l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~-L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 123 LNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKR-LHE-KVNIIPLIAKAD 178 (418)
T ss_dssp TTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHH-HTT-TSEEEEEEESTT
T ss_pred HHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHH-Hhc-cCcEEEEEEccc
Confidence 6779999999999999 99999999 6999988666544 443 667788777544
No 203
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.37 E-value=1e-13 Score=140.47 Aligned_cols=145 Identities=14% Similarity=0.218 Sum_probs=85.5
Q ss_pred eEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC--CcceEEECCce-------eEEEEccccccccCccccHHHHHHhh
Q 048654 516 VDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP--TEGEVRRSQKL-------RIGRYSQHFVDLLTMEETPVSYLLRL 586 (723)
Q Consensus 516 isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p--~~G~I~~~~~~-------~ig~~~q~~~~~~~~~~~~~~~~~~~ 586 (723)
-.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.++. .++|++|...
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~---------------- 72 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHD---------------- 72 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHH----------------
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHH----------------
Confidence 3446789999999999999999999999999986 67877654431 1333333210
Q ss_pred CCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC
Q 048654 587 HPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT 666 (723)
Q Consensus 587 ~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~ 666 (723)
.+..+...-.+..... ....+.|-.++. +..++..++++||| ||+.+...+.+.+. -+
T Consensus 73 -----------~f~~~~~~~~f~E~~~--~~~~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~ 130 (219)
T 1s96_A 73 -----------EFKEMISRDAFLEHAE--VFGNYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HA 130 (219)
T ss_dssp -----------HHHHHHHTTCEEEEEE--ETTEEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TC
T ss_pred -----------HHHHHHhcCHHHHHHH--HHhccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CC
Confidence 0000000000000000 000011111222 33445568999999 99999999999887 35
Q ss_pred ceEEEEecCHHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHHHHHH
Q 048654 667 GGVVLVSHDSRLISRVCDDEERSEIWVVENGTVSRFPGTFEEYKEDL 713 (723)
Q Consensus 667 ~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~~~~~ 713 (723)
.+||++|||++.+.. |+ +.+| .++++++...+
T Consensus 131 ~tI~i~th~~~~l~~--------Rl--~~rG-----~~~~e~i~~rl 162 (219)
T 1s96_A 131 RSIFILPPSKIELDR--------RL--RGRG-----QDSEEVIAKRM 162 (219)
T ss_dssp EEEEEECSSHHHHHH--------HH--HTTS-----CSCHHHHHHHH
T ss_pred EEEEEECCCHHHHHH--------HH--HHcC-----CCCHHHHHHHH
Confidence 689999999998874 33 4555 35666666544
No 204
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.37 E-value=1.5e-13 Score=150.21 Aligned_cols=123 Identities=15% Similarity=0.212 Sum_probs=82.7
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCC-cceEEECCceeEEEEccccccccCccccHHHHHHhhCCCC
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPT-EGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQ 590 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~-~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~ 590 (723)
+|++++ +.+|++++|+||||||||||+++|+|+++|+ +|.|...+.. +.+ ... ..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~-~e~---------~~~------------~~ 182 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEY---------VFK------------HK 182 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS-CCS---------CCC------------CS
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc-Hhh---------hhc------------cC
Confidence 566665 7899999999999999999999999999997 8998643321 000 000 00
Q ss_pred CCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEE
Q 048654 591 EGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVV 670 (723)
Q Consensus 591 ~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVI 670 (723)
.+.-.+ ..+|+. + ..| +.+|+++|..+|++||+|||| |.+....+.+.. ..+.+||
T Consensus 183 ~~~v~Q-------~~~g~~------~-~~~------~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi 238 (372)
T 2ewv_A 183 KSIVNQ-------REVGED------T-KSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVF 238 (372)
T ss_dssp SSEEEE-------EEBTTT------B-SCS------HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEE
T ss_pred ceEEEe-------eecCCC------H-HHH------HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEE
Confidence 000000 013332 1 344 469999999999999999999 887765544443 2346799
Q ss_pred EEecCHHHHHHhc
Q 048654 671 LVSHDSRLISRVC 683 (723)
Q Consensus 671 ivSHD~~~~~~~~ 683 (723)
+++|+.+ +..+|
T Consensus 239 ~t~H~~~-~~~~~ 250 (372)
T 2ewv_A 239 GTLHTNT-AIDTI 250 (372)
T ss_dssp ECCCCCS-HHHHH
T ss_pred EEECcch-HHHHH
Confidence 9999865 44444
No 205
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.35 E-value=5.3e-12 Score=128.30 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=26.3
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
-|++|++++|+||||||||||++.|++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999999999999984
No 206
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.34 E-value=4.9e-14 Score=153.43 Aligned_cols=152 Identities=16% Similarity=0.157 Sum_probs=99.9
Q ss_pred EEEEEEEE---cCCCcccce---------eceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEE
Q 048654 497 QLIEVSFS---YPNREDFKL---------SDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGR 564 (723)
Q Consensus 497 ~~~~ls~~---y~~~~~~~L---------~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~ 564 (723)
++++++|+ |+.....+| +++||.|.+|++++|+||||||||||+++|+|+++|++|.|.+.+...+.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~- 215 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELF- 215 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCC-
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccC-
Confidence 56778887 753222344 99999999999999999999999999999999999999999876531100
Q ss_pred EccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEec
Q 048654 565 YSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD 644 (723)
Q Consensus 565 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLD 644 (723)
..+ .... + ...... . +...++++..++..|+.++..+|+.+|+|
T Consensus 216 ~~~-------~~~~-v----~~v~~q------~------------------~~~~~~~~~t~~~~i~~~l~~~pd~~l~~ 259 (361)
T 2gza_A 216 LPD-------HPNH-V----HLFYPS------E------------------AKEEENAPVTAATLLRSCLRMKPTRILLA 259 (361)
T ss_dssp CTT-------CSSE-E----EEECC----------------------------------CCHHHHHHHHTTSCCSEEEES
T ss_pred ccc-------cCCE-E----EEeecC------c------------------cccccccccCHHHHHHHHHhcCCCEEEEc
Confidence 000 0000 0 000000 0 00012345568899999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCCCcEEEEEECCe
Q 048654 645 EPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEERSEIWVVENGT 698 (723)
Q Consensus 645 EPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~~drv~vl~~G~ 698 (723)
||+.. .+.++|..+. .++|.++|+.. +...| +|+..+..+.
T Consensus 260 e~r~~-------~~~~~l~~l~~g~~~~l~t~H~~~-~~~~~-----~Rl~~l~~~~ 303 (361)
T 2gza_A 260 ELRGG-------EAYDFINVAASGHGGSITSCHAGS-CELTF-----ERLALMVLQN 303 (361)
T ss_dssp CCCST-------HHHHHHHHHHTTCCSCEEEEECSS-HHHHH-----HHHHHHHTTS
T ss_pred CchHH-------HHHHHHHHHhcCCCeEEEEECCCC-HHHHH-----HHHHHHHhcc
Confidence 99861 2333444432 47899999976 66666 4777776654
No 207
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.34 E-value=2.5e-12 Score=140.50 Aligned_cols=78 Identities=27% Similarity=0.460 Sum_probs=67.5
Q ss_pred CCCCCCCHHHHHHH------HHHHHHccC-CCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHhcCc
Q 048654 615 TPIAKLSGGQKARV------VFTSISMSK-PHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRVCDD 685 (723)
Q Consensus 615 ~~i~~LSGGqkqRv------~lAral~~~-p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~~d~ 685 (723)
.++..|||||+||| ++|++++.+ |++|||||||+|||+.....+.+.|.++. .+||+||||.+ +..+||
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d- 353 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVAD- 353 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCS-
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCC-
Confidence 45678999999988 567888999 99999999999999999999999999874 48999999987 467774
Q ss_pred CCCcEEEEEE-CCe
Q 048654 686 EERSEIWVVE-NGT 698 (723)
Q Consensus 686 ~~~drv~vl~-~G~ 698 (723)
++++|+ +|.
T Consensus 354 ----~~~~l~k~~~ 363 (371)
T 3auy_A 354 ----VIINVKKDGN 363 (371)
T ss_dssp ----EEEEEEESSS
T ss_pred ----EEEEEEecCC
Confidence 899997 443
No 208
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.31 E-value=2.1e-14 Score=141.16 Aligned_cols=143 Identities=15% Similarity=0.056 Sum_probs=81.1
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce---------eEEEEccccccccCccccHHHHHHhhCCC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL---------RIGRYSQHFVDLLTMEETPVSYLLRLHPD 589 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~---------~ig~~~q~~~~~~~~~~~~~~~~~~~~~~ 589 (723)
.|.+|++++|+||||||||||+++|+|. |..|.|.+++.. .++|++|......++.++.... ......
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~~~~~~ 81 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADV-AGRYAK 81 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHH-HHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHH-HHHHhc
Confidence 4789999999999999999999999998 778988876532 1223333211001111110000 000000
Q ss_pred CCCCcHHHHHHHHHHhCCCCCCC-CcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--
Q 048654 590 QEGLSKQEAVRAKLGKFGLPSHN-HLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT-- 666 (723)
Q Consensus 590 ~~~~~~~~~~~~~L~~~gl~~~~-~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~-- 666 (723)
. +.. ..+..++..+++.... ...++..+|+|++|+++++|++.++|+++ +|+.....+.+.+..+.
T Consensus 82 ~-~~~--~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~ 150 (191)
T 1zp6_A 82 E-GYF--VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAF 150 (191)
T ss_dssp T-SCE--EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGG
T ss_pred c-CCe--EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcc
Confidence 0 000 0000000111111000 02345679999999999999999999887 68888888888776553
Q ss_pred ceEEEEecC
Q 048654 667 GGVVLVSHD 675 (723)
Q Consensus 667 ~tVIivSHD 675 (723)
..+++.|++
T Consensus 151 ~~~~i~t~~ 159 (191)
T 1zp6_A 151 EHHVLPVSG 159 (191)
T ss_dssp GGGEEECTT
T ss_pred cccEEECCC
Confidence 245555553
No 209
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.30 E-value=5.4e-12 Score=134.04 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=83.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHH--HHHHhhhcCcCCCC
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLR--EEVASLQNSTSVDG 267 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~ 267 (723)
+|++++|+||||||||||+++|+|++.+. .++|.+.+.++...... .+...+. ..+.++.+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~--~g~V~l~g~D~~r~~a~---------~ql~~~~~~~~i~~v~q~~~--- 166 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL--GKKVMFCAGDTFRAAGG---------TQLSEWGKRLSIPVIQGPEG--- 166 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEECCCCSSTTTT---------HHHHHHHHHHTCCEECCCTT---
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeecCCChhHH---------HHHHHHHHhcCceEEEeCCC---
Confidence 68999999999999999999999987654 56677777665322110 0111111 11122211100
Q ss_pred CCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCCC--EEEEe
Q 048654 268 EEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPT--LLLLD 345 (723)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~--lLLLD 345 (723)
......+.+.+... ..... -..+++..|.. +.....++...+||++|||||+.+|+ +|.||
T Consensus 167 ---~~p~~~v~~~v~~~--~~~~~--------d~~llDt~G~~----~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD 229 (304)
T 1rj9_A 167 ---TDSAALAYDAVQAM--KARGY--------DLLFVDTAGRL----HTKHNLMEELKKVKRAIAKADPEEPKEVWLVLD 229 (304)
T ss_dssp ---CCHHHHHHHHHHHH--HHHTC--------SEEEECCCCCC----TTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE
T ss_pred ---CCHHHHHHHHHHHH--HhCCC--------CEEEecCCCCC----CchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc
Confidence 01111111111100 00000 00012223332 12223345666999999999999999 67777
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHH
Q 048654 346 EPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRD 378 (723)
Q Consensus 346 EPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~ 378 (723)
|+++.+.. ..+..+-+..+.|+|++||+..
T Consensus 230 -a~t~~~~~--~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 230 -AVTGQNGL--EQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp -TTBCTHHH--HHHHHHHHHHCCSEEEEECTTS
T ss_pred -HHHHHHHH--HHHHHHHHHcCCcEEEEECCcc
Confidence 66665533 2333433455889999999843
No 210
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.30 E-value=8.1e-12 Score=126.90 Aligned_cols=145 Identities=19% Similarity=0.226 Sum_probs=77.6
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHc--CCCC-----CcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAG--DLSP-----TEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQE 591 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~G--l~~p-----~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 591 (723)
.|.+|++++|+||||||||||++.|++ +++| ..|.+++.... .+.. ...... ....
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~-----------~~~~-~~~~~~-~~~~---- 82 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG-----------TFRP-ERLLAV-AERY---- 82 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS-----------CCCH-HHHHHH-HHHT----
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC-----------CcCH-HHHHHH-HHHc----
Confidence 478999999999999999999999999 5665 33444433211 0000 011111 1111
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHH-HHHHHHc--cCCCeEEeccCCCCCCHH-------H-----HH
Q 048654 592 GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARV-VFTSISM--SKPHILLLDEPTNHLDMQ-------S-----ID 656 (723)
Q Consensus 592 ~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv-~lAral~--~~p~lLlLDEPT~~LD~~-------s-----~~ 656 (723)
+.... .+++.+.+ +..++..+...+ .-+..++ .+|++||+|||++.+|.. . ..
T Consensus 83 g~~~~----~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~ 150 (243)
T 1n0w_A 83 GLSGS----DVLDNVAY--------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLA 150 (243)
T ss_dssp TCCHH----HHHHTEEE--------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHH
T ss_pred CCCHH----HHhhCeEE--------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHH
Confidence 11111 12222211 123555554332 2223333 589999999999999975 2 23
Q ss_pred HHHHHHH----HcCceEEEEecCHHHHHH-------------------hcCcCCCcEEEEEECC
Q 048654 657 ALADALD----EFTGGVVLVSHDSRLISR-------------------VCDDEERSEIWVVENG 697 (723)
Q Consensus 657 ~l~~~L~----~~~~tVIivSHD~~~~~~-------------------~~d~~~~drv~vl~~G 697 (723)
.+...|. +.+.+||+++|....... +| |.+++|+.|
T Consensus 151 ~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----d~vi~l~~~ 209 (243)
T 1n0w_A 151 RFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHAS-----TTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHCCEEEEEC-------------------------CCTT-----CEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcC-----cEEEEEEEc
Confidence 3333333 346799999997765543 45 589999864
No 211
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.27 E-value=3.8e-14 Score=154.50 Aligned_cols=155 Identities=15% Similarity=0.087 Sum_probs=91.6
Q ss_pred eeceEEEEec--CcEEEEEcCCCCcHHHHHHHHHcCCCCCc----ceEEECCceeEEEEccccccccCcccc-HHHHHHh
Q 048654 513 LSDVDVGIDM--GTRVAIVGPNGAGKSTLLNLLAGDLSPTE----GEVRRSQKLRIGRYSQHFVDLLTMEET-PVSYLLR 585 (723)
Q Consensus 513 L~~isl~i~~--Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~----G~I~~~~~~~ig~~~q~~~~~~~~~~~-~~~~~~~ 585 (723)
...|++.|.+ |++++|+||||||||||+++|+|+++|+. |+|++.+... .... .+...+. .+.+...
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~----~~~~--~~~~~~~~~I~~~~q 231 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG----GDEQ--AMQYSDYPQMALGHQ 231 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS----SCTT--SSCTTTHHHHHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC----CCcc--cCChhHHHHHHHHHH
Confidence 4679999999 99999999999999999999999999998 7765421100 0000 0111110 0111100
Q ss_pred hCCCCCCCcHHHHH-HHHHHhCCC-CCCCCcCCCCCCCHHHHHHHHHHHHHc-cCCCeEEecc---CC------CCCCHH
Q 048654 586 LHPDQEGLSKQEAV-RAKLGKFGL-PSHNHLTPIAKLSGGQKARVVFTSISM-SKPHILLLDE---PT------NHLDMQ 653 (723)
Q Consensus 586 ~~~~~~~~~~~~~~-~~~L~~~gl-~~~~~~~~i~~LSGGqkqRv~lAral~-~~p~lLlLDE---PT------~~LD~~ 653 (723)
..... ....+.+-+ ........+..+|+|++|+..+++++. .+|+++|||| |+ .++|..
T Consensus 232 ---------~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~ 302 (365)
T 1lw7_A 232 ---------RYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQK 302 (365)
T ss_dssp ---------HHHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CC
T ss_pred ---------HHHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHH
Confidence 00000 000011100 000001123356777788888888774 6999999999 65 589999
Q ss_pred HHHHHHHHHHHc----CceEEEEecCHHHHHHhc
Q 048654 654 SIDALADALDEF----TGGVVLVSHDSRLISRVC 683 (723)
Q Consensus 654 s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~ 683 (723)
.+..+.++|.++ +.+||+++|. ....++|
T Consensus 303 ~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~ 335 (365)
T 1lw7_A 303 QRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYN 335 (365)
T ss_dssp SHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHH
Confidence 999998888543 4689999986 3455565
No 212
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.27 E-value=3e-14 Score=165.32 Aligned_cols=181 Identities=17% Similarity=0.170 Sum_probs=89.0
Q ss_pred ceEEEeEEEEeCC--eeeeEee----------eEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeec
Q 048654 165 DITIDNFSVAARG--KELLKST----------SVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVV 232 (723)
Q Consensus 165 ~I~l~nls~~y~~--~~vL~~i----------sl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~ 232 (723)
.+.++|+++.|+. +++|+.+ +|+++. +||||||||||||||++|+|+..| .+.|.|.+.+.++.
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEE
Confidence 4788999999975 3466555 366765 999999999999999999998544 14555555554431
Q ss_pred CCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcc
Q 048654 233 GDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKE 312 (723)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~ 312 (723)
........ .++..++++.+... ......+.+.+ ......++...
T Consensus 86 ~~~~~~~~----------~~~~~i~~v~Q~~~------l~~~~tv~e~i-------------------~~~~~~~~~~~- 129 (608)
T 3szr_A 86 LKKLVNED----------KWRGKVSYQDYEIE------ISDASEVEKEI-------------------NKAQNAIAGEG- 129 (608)
T ss_dssp EEECSSSS----------CCEEEESCC---CC------CCCHHHHHTTH-------------------HHHHHHHHCSS-
T ss_pred EecCCccc----------cceeEEeeeccccc------CCCHHHHHHHH-------------------HHHHHHhcCCc-
Confidence 10000000 00000011100000 00111111111 11111111110
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCC------CCCCCHHHHHHHHHHHhhc-----CcEEEEEeCCHHH--
Q 048654 313 MQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEP------TNHLDLRAVLWLEEYLCRW-----KKTLVVVSHDRDF-- 379 (723)
Q Consensus 313 ~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEP------T~~LD~~~~~~L~~~L~~~-----~~TVIivsHdl~~-- 379 (723)
..+| ++++.++.+....|+++|+||| |++||+..+..+.+++.++ +.++++++|+++.
T Consensus 130 ------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~ 200 (608)
T 3szr_A 130 ------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIAT 200 (608)
T ss_dssp ------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTT
T ss_pred ------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhcc
Confidence 0111 1233444455668999999999 9999999998888888774 3589999999763
Q ss_pred ------HHhh----CCEEEEEeCCE
Q 048654 380 ------LNTV----CTEIIHLHDQK 394 (723)
Q Consensus 380 ------l~~i----ad~Ii~L~~G~ 394 (723)
+..+ +..|+|+.++.
T Consensus 201 ~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 201 TEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp CHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred HHHHHHHHHHhhcCCceEEEecchh
Confidence 3332 35678887643
No 213
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.26 E-value=2.1e-14 Score=156.50 Aligned_cols=72 Identities=7% Similarity=-0.009 Sum_probs=49.6
Q ss_pred CCCChHHHHHHHHHHHHc-cCCCEEEEeC---CC------CCCCHHHHHHHHHHHhh----cCcEEEEEeCCHHHHHhhC
Q 048654 319 KSFSGGWRMRISLARALF-VQPTLLLLDE---PT------NHLDLRAVLWLEEYLCR----WKKTLVVVSHDRDFLNTVC 384 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~-~~P~lLLLDE---PT------~~LD~~~~~~L~~~L~~----~~~TVIivsHdl~~l~~ia 384 (723)
..+|+|++|+..+++++. .+|+++|||| |+ .+||+..+..+.+.|.+ .+.+||+++|. .....+|
T Consensus 257 ~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~ 335 (365)
T 1lw7_A 257 FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYN 335 (365)
T ss_dssp HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHH
Confidence 345677788888888874 6999999999 65 58999888888887743 36799999975 4555566
Q ss_pred CEEEEEe
Q 048654 385 TEIIHLH 391 (723)
Q Consensus 385 d~Ii~L~ 391 (723)
+++.+|+
T Consensus 336 ~~i~~i~ 342 (365)
T 1lw7_A 336 QVKAVIE 342 (365)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655554
No 214
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.26 E-value=1.2e-11 Score=137.58 Aligned_cols=75 Identities=17% Similarity=0.275 Sum_probs=66.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHc----cCCCeEEeccCCCCCCHHHHHHHHHHHHHcC---ceEEEEecCHHHHHHhcCcCC
Q 048654 615 TPIAKLSGGQKARVVFTSISM----SKPHILLLDEPTNHLDMQSIDALADALDEFT---GGVVLVSHDSRLISRVCDDEE 687 (723)
Q Consensus 615 ~~i~~LSGGqkqRv~lAral~----~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~---~tVIivSHD~~~~~~~~d~~~ 687 (723)
+++..||||||||++||++|+ .+|+||||||||++||+..+..|.++|.++. .+||+|||+..++ ..|
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~---- 403 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKS---- 403 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTC----
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhC----
Confidence 456889999999999999999 5899999999999999999999999999874 4899999997664 567
Q ss_pred CcEEEEEE
Q 048654 688 RSEIWVVE 695 (723)
Q Consensus 688 ~drv~vl~ 695 (723)
|++++|.
T Consensus 404 -d~~~~~~ 410 (430)
T 1w1w_A 404 -DALVGVY 410 (430)
T ss_dssp -SEEEEEE
T ss_pred -CEEEEEE
Confidence 4888886
No 215
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.23 E-value=1.2e-12 Score=143.06 Aligned_cols=131 Identities=19% Similarity=0.185 Sum_probs=86.2
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHh
Q 048654 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVAS 258 (723)
Q Consensus 179 ~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 258 (723)
.+|++++ +.+|++++|+||||||||||+++|+|++.+. ..+.|.+.+..+...
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e~~------------------------ 178 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIEYV------------------------ 178 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCCSC------------------------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHhhh------------------------
Confidence 4566665 7899999999999999999999999976542 145665544322100
Q ss_pred hhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccC
Q 048654 259 LQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQ 338 (723)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~ 338 (723)
+.... . .+.. ..+|+. +..| +.+|+++|..+
T Consensus 179 ~~~~~-------~------------------~v~Q-----------~~~g~~-------~~~~------~~~l~~~L~~~ 209 (372)
T 2ewv_A 179 FKHKK-------S------------------IVNQ-----------REVGED-------TKSF------ADALRAALRED 209 (372)
T ss_dssp CCCSS-------S------------------EEEE-----------EEBTTT-------BSCS------HHHHHHHTTSC
T ss_pred hccCc-------e------------------EEEe-----------eecCCC-------HHHH------HHHHHHHhhhC
Confidence 00000 0 0000 012321 2344 56999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEE
Q 048654 339 PTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHL 390 (723)
Q Consensus 339 P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L 390 (723)
|++||+|||+ |+.+...+.+.. ..+.+||+++|+.+ +..+|||++.|
T Consensus 210 pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 210 PDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp CSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred cCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcch-HHHHHHHHHHh
Confidence 9999999999 887765554443 34779999999966 55667776544
No 216
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.22 E-value=2.7e-12 Score=129.99 Aligned_cols=59 Identities=7% Similarity=0.152 Sum_probs=45.1
Q ss_pred HHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeCCEEEEecCChhhHH
Q 048654 332 ARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDQKLHFYRGNFDDFE 406 (723)
Q Consensus 332 ArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~G~i~~~~g~~~~~~ 406 (723)
+..++..++++||| ||+.++..+.+.+. .+.||++++|+++.+.. |+ +..| .++.+++.
T Consensus 101 v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~---Rl--~~rG-----~~~~e~i~ 159 (219)
T 1s96_A 101 IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILPPSKIELDR---RL--RGRG-----QDSEEVIA 159 (219)
T ss_dssp HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEECSSHHHHHH---HH--HTTS-----CSCHHHHH
T ss_pred HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEECCCHHHHHH---HH--HHcC-----CCCHHHHH
Confidence 34455568999999 99999999999887 36799999999999876 33 5566 24555543
No 217
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.22 E-value=6.7e-14 Score=143.82 Aligned_cols=135 Identities=24% Similarity=0.302 Sum_probs=81.7
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHH---cCCCCCcceEEECCc---eeEE----EEccccccccCccccHHHHH---HhhCC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLA---GDLSPTEGEVRRSQK---LRIG----RYSQHFVDLLTMEETPVSYL---LRLHP 588 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~---Gl~~p~~G~I~~~~~---~~ig----~~~q~~~~~~~~~~~~~~~~---~~~~~ 588 (723)
++++++|+||||||||||+++|+ |+..|+.|.|.+.+. ..++ +++|.. .+.........+ +....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~v~~~l~~~l~~~~ 103 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKS--LLVPDHVITRLMMSELENRR 103 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHTCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999 999999999865431 1112 122221 111111111111 10000
Q ss_pred C----CCCC-cHHHHHHHHHH--hCC------------CCCCCCcCCCCCCCHHHHHHHHHHHHH-ccCCCeEEec----
Q 048654 589 D----QEGL-SKQEAVRAKLG--KFG------------LPSHNHLTPIAKLSGGQKARVVFTSIS-MSKPHILLLD---- 644 (723)
Q Consensus 589 ~----~~~~-~~~~~~~~~L~--~~g------------l~~~~~~~~i~~LSGGqkqRv~lAral-~~~p~lLlLD---- 644 (723)
. ..+. .....+..+.. .++ +. ....+++..||| || +++ +.+|++++||
T Consensus 104 ~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~-r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~ 175 (246)
T 2bbw_A 104 GQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKD-RLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTG 175 (246)
T ss_dssp TSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHH-HHHTEEEETTTT----EE---EETTTSCCSSTTBCTTTC
T ss_pred CCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHH-HHHcCCCcCCCC----Cc---cccccCCCcccccccccc
Confidence 0 0011 11222333322 122 11 111345678999 66 677 9999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC
Q 048654 645 EPTNHLDMQSIDALADALDEFT 666 (723)
Q Consensus 645 EPT~~LD~~s~~~l~~~L~~~~ 666 (723)
|||++||..+...+.+.|.++.
T Consensus 176 EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 176 EPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CBCBCCGGGSHHHHHHHHHHHH
T ss_pred cccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999888774
No 218
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.22 E-value=3.5e-12 Score=140.69 Aligned_cols=168 Identities=17% Similarity=0.096 Sum_probs=99.0
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcE--EEEEcCCCCcHHHHHHHHHcCCCCCcceEEE---CC--ceeEEEEcc
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTR--VAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR---SQ--KLRIGRYSQ 567 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~--vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~---~~--~~~ig~~~q 567 (723)
.|++.+ ++.|++. + |++|||+|.+|++ ++|+||||||||||+++|+|+.- .|.... .+ ...++|++|
T Consensus 16 ~l~~~~-~~~y~~~--~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q 89 (427)
T 2qag_B 16 TVPLAG-HVGFDSL--P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQ 89 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEE
T ss_pred eEEEee-EEEECCe--e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEee
Confidence 345566 7888753 4 9999999999999 99999999999999999999842 221111 01 125788888
Q ss_pred ccc--cccCccccHHHHHHhhCCCCCC---Cc-----HHHHHHHHHHhC-CCCCC---CCcCCC-----------CCCCH
Q 048654 568 HFV--DLLTMEETPVSYLLRLHPDQEG---LS-----KQEAVRAKLGKF-GLPSH---NHLTPI-----------AKLSG 622 (723)
Q Consensus 568 ~~~--~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~L~~~-gl~~~---~~~~~i-----------~~LSG 622 (723)
... ..+++.+++. +...... .. ....+..+|..+ ++... ..+.++ ..|+-
T Consensus 90 ~~~l~~~ltv~D~~~-----~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~ 164 (427)
T 2qag_B 90 ESNVRLKLTIVSTVG-----FGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKS 164 (427)
T ss_dssp C--CEEEEEEEEEEC-----CCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CH
T ss_pred cCccccccchhhhhh-----hhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCH
Confidence 532 2233333321 0000000 00 122344556555 44311 011111 14555
Q ss_pred HHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHH-c---CceEEEEecCH
Q 048654 623 GQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE-F---TGGVVLVSHDS 676 (723)
Q Consensus 623 GqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~-~---~~tVIivSHD~ 676 (723)
.. +.|+++|..+++||++|+||..|.+.....+.+.|++ + +.+|+.+|.|-
T Consensus 165 ~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 165 LD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp HH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred HH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 55 7999999999999999999999999888888888775 4 34788888753
No 219
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.22 E-value=2.1e-12 Score=142.76 Aligned_cols=150 Identities=20% Similarity=0.197 Sum_probs=85.5
Q ss_pred eeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHH-HHhhCCCCC
Q 048654 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSY-LLRLHPDQE 591 (723)
Q Consensus 513 L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~-~~~~~~~~~ 591 (723)
-++|+|+++.|++++|+|+|||||||||++|+|..+...+.-.......++++.+.....+.+.+++-.. ....+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~--- 223 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGK--- 223 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSC---
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhh---
Confidence 4789999999999999999999999999999998431000000000112333333210001111110000 000000
Q ss_pred CCcHH-----HHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHH---HHHH
Q 048654 592 GLSKQ-----EAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALA---DALD 663 (723)
Q Consensus 592 ~~~~~-----~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~---~~L~ 663 (723)
+.... +.+..+|..+++. ..++.+||+|++|++.+|++|+..|.||+| |.+|+.....+. +.+.
T Consensus 224 ~L~~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~ 295 (416)
T 1udx_A 224 GLGLEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALA 295 (416)
T ss_dssp CSCHHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHH
Confidence 00010 0112233344553 356788999999999999999999999999 999986553332 2333
Q ss_pred HcCceEEEEe
Q 048654 664 EFTGGVVLVS 673 (723)
Q Consensus 664 ~~~~tVIivS 673 (723)
+.+.+||+||
T Consensus 296 ~~g~~vi~iS 305 (416)
T 1udx_A 296 REGLAVLPVS 305 (416)
T ss_dssp TTTSCEEECC
T ss_pred hcCCeEEEEE
Confidence 3344666666
No 220
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.22 E-value=2.5e-13 Score=143.79 Aligned_cols=126 Identities=17% Similarity=0.106 Sum_probs=84.6
Q ss_pred eceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCC
Q 048654 514 SDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGL 593 (723)
Q Consensus 514 ~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (723)
++++|+ +|++++|+|+||+||||++..|+|.+.+..|+|.+.+. +.. .....
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~--------d~~------~~~~~------------ 142 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA--------DTQ------RPAAR------------ 142 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC--------CSS------CHHHH------------
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC--------Ccc------cHhHH------------
Confidence 456666 89999999999999999999999999988888764321 110 00000
Q ss_pred cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccC-CCCCCHHHHHHHHHHHHHcC--ceEE
Q 048654 594 SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEP-TNHLDMQSIDALADALDEFT--GGVV 670 (723)
Q Consensus 594 ~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEP-T~~LD~~s~~~l~~~L~~~~--~tVI 670 (723)
.....+.+..|+.-.... ...+-.+-+|.+|+++...+++++|+||| +.++|......+..++.... .+++
T Consensus 143 ---~ql~~~~~~~~l~~~~~~---~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~l 216 (295)
T 1ls1_A 143 ---EQLRLLGEKVGVPVLEVM---DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLL 216 (295)
T ss_dssp ---HHHHHHHHHHTCCEEECC---TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEE
T ss_pred ---HHHHHhcccCCeEEEEcC---CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEE
Confidence 011122334455321100 01233456789999998899999999999 99999988888888777654 2344
Q ss_pred EEe
Q 048654 671 LVS 673 (723)
Q Consensus 671 ivS 673 (723)
++.
T Consensus 217 v~~ 219 (295)
T 1ls1_A 217 VLD 219 (295)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 221
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.16 E-value=1.4e-11 Score=135.95 Aligned_cols=173 Identities=14% Similarity=0.091 Sum_probs=95.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcE--EEEECCCCccHHHHHHHHHhCCCC-------CCCc--EEEEEeeeeecC
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKR--YGLVGPNGMGKSTLLKLLAWRKIP-------VPKN--IDVLLVEQEVVG 233 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~--~~LvG~NGsGKSTLlk~L~G~~~~-------~~~~--~~i~~~~q~~~~ 233 (723)
.|++.+ ++.|++.+ |+++||+|.+|++ ++|||||||||||||++|+|+... .++. -.+.++-|+...
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l 93 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNV 93 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--C
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCcc
Confidence 466777 88999888 9999999999999 999999999999999999997421 0111 012222221100
Q ss_pred CChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhC-CCCcc
Q 048654 234 DDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGL-GFTKE 312 (723)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~l-gl~~~ 312 (723)
.. .+...++... +... ........+. .....++..+|... ++...
T Consensus 94 ~~-------------------~ltv~D~~~~------g~~~-~~~~~~~~i~--------~~i~~q~~~~L~e~~~i~r~ 139 (427)
T 2qag_B 94 RL-------------------KLTIVSTVGF------GDQI-NKEDSYKPIV--------EFIDAQFEAYLQEELKIRRV 139 (427)
T ss_dssp EE-------------------EEEEEEEECC------CC-C-CHHHHSHHHH--------HHHHHHHHHHHHHC--CCCC
T ss_pred cc-------------------ccchhhhhhh------hhcc-ccchhhhHHH--------HHHHHHHHHHHHHHHhhhhh
Confidence 00 0000011000 0000 0000000000 11234455556554 43210
Q ss_pred ---ccCCC-----------CCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh----cCcEEEEEe
Q 048654 313 ---MQGRP-----------TKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR----WKKTLVVVS 374 (723)
Q Consensus 313 ---~~~~~-----------~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~----~~~TVIivs 374 (723)
..+.. ...|+-.. +.|+++|..+++||++|+||..|.+.....+.+.+++ .+.+|+.+|
T Consensus 140 l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is 216 (427)
T 2qag_B 140 LHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFP 216 (427)
T ss_dssp CCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC
T ss_pred hcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecC
Confidence 01111 12455555 8999999999999999999999999888877777764 367888888
Q ss_pred CC
Q 048654 375 HD 376 (723)
Q Consensus 375 Hd 376 (723)
.|
T Consensus 217 ~~ 218 (427)
T 2qag_B 217 TD 218 (427)
T ss_dssp --
T ss_pred CC
Confidence 65
No 222
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.16 E-value=4e-11 Score=116.80 Aligned_cols=42 Identities=12% Similarity=0.121 Sum_probs=35.5
Q ss_pred cCCCEEEEeCCCC-CCCHHHHHHHHHHHhhc---CcEEEEEeCCHH
Q 048654 337 VQPTLLLLDEPTN-HLDLRAVLWLEEYLCRW---KKTLVVVSHDRD 378 (723)
Q Consensus 337 ~~P~lLLLDEPT~-~LD~~~~~~L~~~L~~~---~~TVIivsHdl~ 378 (723)
.+|+|||||||++ ++|+..+..|.++|... +.++|++||...
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 3899999999985 99999999888888643 679999999753
No 223
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.16 E-value=1.2e-10 Score=128.09 Aligned_cols=57 Identities=11% Similarity=0.079 Sum_probs=40.9
Q ss_pred cCCCEEEEeCCCCCCCHHHH------------HHHHHHH----hhcCcEEEEEeCCH-------------------HHHH
Q 048654 337 VQPTLLLLDEPTNHLDLRAV------------LWLEEYL----CRWKKTLVVVSHDR-------------------DFLN 381 (723)
Q Consensus 337 ~~P~lLLLDEPT~~LD~~~~------------~~L~~~L----~~~~~TVIivsHdl-------------------~~l~ 381 (723)
.+|++||+||||+.+|+... ..+...| ++++.|||+|+|.. ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 57999999999999996421 3333433 34578999999983 3357
Q ss_pred hhCCEEEEEeCC
Q 048654 382 TVCTEIIHLHDQ 393 (723)
Q Consensus 382 ~iad~Ii~L~~G 393 (723)
++||.+++|+.+
T Consensus 352 ~~ad~vl~L~~~ 363 (400)
T 3lda_A 352 YSSTTRLGFKKG 363 (400)
T ss_dssp HHCSEEEEEEEC
T ss_pred HhcceEEEEEec
Confidence 789999999865
No 224
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.15 E-value=6.4e-14 Score=137.76 Aligned_cols=157 Identities=13% Similarity=0.079 Sum_probs=91.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce-----eEEEEccccccccCccccHHHHHHhhCCCCCCCcHHH
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL-----RIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQE 597 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~-----~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (723)
|++++|+||||||||||+++|++ |..|.+++++.. ..++++|..... ........+ ..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~l------------~~ 64 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDE--LLALTWKNI------------TD 64 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHH--HHHHHHHHH------------HH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchh--HHHHHHHHH------------HH
Confidence 78999999999999999999997 667888765431 122232221000 000000000 00
Q ss_pred HHHHHHHhCCC----CCC---CCcCCCCCC--CHHHHHHHHHHH------HHccCCCeEEeccCCCCCCHHHHHHHHHHH
Q 048654 598 AVRAKLGKFGL----PSH---NHLTPIAKL--SGGQKARVVFTS------ISMSKPHILLLDEPTNHLDMQSIDALADAL 662 (723)
Q Consensus 598 ~~~~~L~~~gl----~~~---~~~~~i~~L--SGGqkqRv~lAr------al~~~p~lLlLDEPT~~LD~~s~~~l~~~L 662 (723)
.+..++. .+. ... .....+..+ |+|++|++.++. +++.+|....+|+ +||+..... .+.+
T Consensus 65 ~~~~~~~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~ 139 (189)
T 2bdt_A 65 LTVNFLL-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEF 139 (189)
T ss_dssp HHHHHHH-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHH
T ss_pred HHHHHHh-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHH
Confidence 0111111 110 000 000111234 888888888888 8888898888884 899988877 7777
Q ss_pred HHcC---ceEEEEecC-HHHHHHhcCcCCCcEEEEEECCeEEecCCCHHHH
Q 048654 663 DEFT---GGVVLVSHD-SRLISRVCDDEERSEIWVVENGTVSRFPGTFEEY 709 (723)
Q Consensus 663 ~~~~---~tVIivSHD-~~~~~~~~d~~~~drv~vl~~G~i~~~~g~~~~~ 709 (723)
..+. .+||.+||. ++.+.++|+ +|+ ++|+++ +.|+++.+
T Consensus 140 ~~~~~~~~~ii~tsh~~~~~~e~~~~-----~i~--~~g~~~-~~~~~~~~ 182 (189)
T 2bdt_A 140 ESKGIDERYFYNTSHLQPTNLNDIVK-----NLK--TNPRFI-FCMAGDPL 182 (189)
T ss_dssp HHTTCCTTSEEECSSSCGGGHHHHHH-----HHH--HCGGGS-CC------
T ss_pred hhcCCCccEEEeCCCCChhhHHHHHH-----HHh--hCCcEE-EeecCCch
Confidence 7653 479999998 999999995 777 999996 56777654
No 225
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.15 E-value=1.7e-11 Score=119.43 Aligned_cols=108 Identities=12% Similarity=0.136 Sum_probs=71.3
Q ss_pred EEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHH
Q 048654 517 DVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQ 596 (723)
Q Consensus 517 sl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (723)
+|.+.+|+.++|+||||+|||||+++|++.+.|..|... .|+. ..+. ..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~-------~~~~--------~~~~-~~--------------- 80 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG-------YFFD--------TKDL-IF--------------- 80 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC-------CEEE--------HHHH-HH---------------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE-------EEEE--------HHHH-HH---------------
Confidence 456778999999999999999999999999876666311 1110 0000 00
Q ss_pred HHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCC-CCCHHHHHHHHHHHHHc---CceEEEE
Q 048654 597 EAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTN-HLDMQSIDALADALDEF---TGGVVLV 672 (723)
Q Consensus 597 ~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~-~LD~~s~~~l~~~L~~~---~~tVIiv 672 (723)
.+........ .. -....+.+|++||||||++ ++|+.....+.++|... +.+||++
T Consensus 81 -~~~~~~~~~~------------~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~t 139 (180)
T 3ec2_A 81 -RLKHLMDEGK------------DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIIT 139 (180)
T ss_dssp -HHHHHHHHTC------------CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred -HHHHHhcCch------------HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 0111111000 00 0112234899999999985 99999999998888765 4689999
Q ss_pred ecCH
Q 048654 673 SHDS 676 (723)
Q Consensus 673 SHD~ 676 (723)
||..
T Consensus 140 sn~~ 143 (180)
T 3ec2_A 140 TNYS 143 (180)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9975
No 226
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.14 E-value=7.5e-14 Score=150.57 Aligned_cols=164 Identities=12% Similarity=0.074 Sum_probs=102.1
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc---------------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK--------------- 559 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~--------------- 559 (723)
+|+++++++.|+. ..+|+++||++.+|++++|+||||||||||+++|+|++.|++|+|.+.+.
T Consensus 29 ~ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 29 LAESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HHTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HHeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 3455677777853 34799999999999999999999999999999999999999999975431
Q ss_pred eeEEEEccccccccC-cc--c-------cHHHH------------------------HHhhCC-------CCCCCcHHH-
Q 048654 560 LRIGRYSQHFVDLLT-ME--E-------TPVSY------------------------LLRLHP-------DQEGLSKQE- 597 (723)
Q Consensus 560 ~~ig~~~q~~~~~~~-~~--~-------~~~~~------------------------~~~~~~-------~~~~~~~~~- 597 (723)
.++++++|....... .. . ..... ...... +.......+
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 134555554211100 00 0 00000 000000 000000000
Q ss_pred ---HHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHcc------CCCeEEeccCCCCCCHHHHHHHHHHHHHc
Q 048654 598 ---AVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMS------KPHILLLDEPTNHLDMQSIDALADALDEF 665 (723)
Q Consensus 598 ---~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~------~p~lLlLDEPT~~LD~~s~~~l~~~L~~~ 665 (723)
.+.+....+.+. ..+..+...+|+|++|++..+++++. .|++++ |+++|......|.+.|.++
T Consensus 187 i~~~i~~~~~ivvlN-K~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 187 IKKGIFELADMIAVN-KADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CCTTHHHHCSEEEEE-CCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEE-chhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 011222222221 11111224689999999999999887 688876 9999999999999988775
No 227
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.12 E-value=7.2e-13 Score=127.36 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=50.8
Q ss_pred EEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCc
Q 048654 499 IEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQK 559 (723)
Q Consensus 499 ~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~ 559 (723)
.++++.|++ ..++++|||+|.+|++++|+||||||||||+++|+|++ |++|+|.+.+.
T Consensus 11 ~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~ 68 (158)
T 1htw_A 11 EFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTY 68 (158)
T ss_dssp HHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTT
T ss_pred HHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCE
Confidence 456777764 35899999999999999999999999999999999999 99999987653
No 228
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.11 E-value=1.1e-12 Score=128.85 Aligned_cols=43 Identities=19% Similarity=0.019 Sum_probs=36.4
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW 366 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~ 366 (723)
.++..+|+|++||++++|++..+|+++ +|+.....+.+.+..+
T Consensus 105 ~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l 147 (191)
T 1zp6_A 105 RPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADL 147 (191)
T ss_dssp SCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCC
T ss_pred CCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhcc
Confidence 455689999999999999999999987 6888888888877654
No 229
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.11 E-value=4.3e-11 Score=113.71 Aligned_cols=91 Identities=21% Similarity=0.245 Sum_probs=64.1
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCC
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQE 591 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 591 (723)
+|+++ +|+.++|+||||+|||||+++|++.+.+ .|. .+.|+... + + . .
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~-------~~~~~~~~--~-~-------------~-~-- 77 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGK-------NAAYIDAA--S-M-------------P-L-- 77 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTC-------CEEEEETT--T-S-------------C-C--
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCC-------cEEEEcHH--H-h-------------h-H--
Confidence 45665 8999999999999999999999998876 351 12222211 0 0 0 0
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---Cce
Q 048654 592 GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGG 668 (723)
Q Consensus 592 ~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~t 668 (723)
. +++.+|+|||||||+. ++....+.+.++|+.. +.+
T Consensus 78 ---~-------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~ 116 (149)
T 2kjq_A 78 ---T-------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKG 116 (149)
T ss_dssp ---C-------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCC
T ss_pred ---H-------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCc
Confidence 0 2356899999999998 6655578888887654 356
Q ss_pred -EEEEecC
Q 048654 669 -VVLVSHD 675 (723)
Q Consensus 669 -VIivSHD 675 (723)
||++||.
T Consensus 117 ~iiits~~ 124 (149)
T 2kjq_A 117 FLLLGSEY 124 (149)
T ss_dssp EEEEEESS
T ss_pred EEEEECCC
Confidence 7888874
No 230
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.10 E-value=1.1e-10 Score=125.73 Aligned_cols=127 Identities=16% Similarity=0.235 Sum_probs=72.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-CCCCCcceEEECCce---------eEEEEccccccccCccccHHHHHHhhCCCCCCCc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG-DLSPTEGEVRRSQKL---------RIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLS 594 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G-l~~p~~G~I~~~~~~---------~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (723)
.+.|+||||+|||||+++|+| ++.|..|.|.+++.. .+++++|...-.+. ....+..
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 104 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEIT-------------PSDMGNN 104 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEEC-------------CC----C
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEec-------------HhhcCCc
Confidence 389999999999999999999 889999998765421 23333332110000 0000000
Q ss_pred HHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEE
Q 048654 595 KQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLV 672 (723)
Q Consensus 595 ~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIiv 672 (723)
....+++.+..+....... ..+ .||| +..+|+|||||||++ ||..+...|.+.|.+.. .++|++
T Consensus 105 ~~~~~~~~i~~~~~~~~~~-~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~ 170 (354)
T 1sxj_E 105 DRIVIQELLKEVAQMEQVD-FQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMV 170 (354)
T ss_dssp CHHHHHHHHHHHTTTTC-------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEE
T ss_pred chHHHHHHHHHHHHhcccc-ccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEE
Confidence 1112444444432211111 111 5677 788999999999999 99999999999999874 579999
Q ss_pred ecCHHH
Q 048654 673 SHDSRL 678 (723)
Q Consensus 673 SHD~~~ 678 (723)
||+...
T Consensus 171 t~~~~~ 176 (354)
T 1sxj_E 171 CDSMSP 176 (354)
T ss_dssp ESCSCS
T ss_pred eCCHHH
Confidence 999754
No 231
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.09 E-value=3.6e-11 Score=129.97 Aligned_cols=111 Identities=17% Similarity=0.120 Sum_probs=72.3
Q ss_pred eeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC-CCcceEEEC-C-------ceeEEEEccccccccCccccHHHHH
Q 048654 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS-PTEGEVRRS-Q-------KLRIGRYSQHFVDLLTMEETPVSYL 583 (723)
Q Consensus 513 L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~-p~~G~I~~~-~-------~~~ig~~~q~~~~~~~~~~~~~~~~ 583 (723)
++++++. .+|++++|+||||||||||+|+|+|++. |..|.|... + ...+++++|... +..++- +
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~----l~dtpg--v 278 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGD----VIDSPG--V 278 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCE----EEECHH--H
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCE----ecCccc--H
Confidence 5666664 4799999999999999999999999999 999999764 3 235778877531 111111 0
Q ss_pred HhhCCCCCCCcH---HHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHH
Q 048654 584 LRLHPDQEGLSK---QEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS 634 (723)
Q Consensus 584 ~~~~~~~~~~~~---~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral 634 (723)
..+ . ..+... ...+.++++.+|+.... +.++.+|| ||+||++||+++
T Consensus 279 ~e~-~-l~~l~~~e~~~~~~e~l~~~gl~~f~-~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 279 REF-G-LWHLEPEQITQGFVEFHDYLGHCKYR-DCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp HTC-C-CCCCCHHHHHHTSGGGGGGTTCSSST-TCCSSSCT-TCHHHHHHHHTS
T ss_pred HHh-h-hcCCCHHHHHHHHHHHHHHcCCchhc-CCCcccCC-HHHHHHHHHhcC
Confidence 111 0 111112 22355678888987554 45668999 999999999875
No 232
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.09 E-value=1.6e-12 Score=141.50 Aligned_cols=153 Identities=14% Similarity=0.054 Sum_probs=96.4
Q ss_pred EEEeEEEE---eCC--eeee---------EeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeec
Q 048654 167 TIDNFSVA---ARG--KELL---------KSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVV 232 (723)
Q Consensus 167 ~l~nls~~---y~~--~~vL---------~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~ 232 (723)
++++++|+ |+. ..+| +++||.|++|++++|+||||||||||+++|+|++.+. .+.|.+.+....
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~--~g~I~ie~~~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD--QRLITIEDVPEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT--SCEEEEESSSCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC--ceEEEECCcccc
Confidence 56677776 653 3455 9999999999999999999999999999999987654 445544321100
Q ss_pred CCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcc
Q 048654 233 GDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKE 312 (723)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~ 312 (723)
.... ..+ . +++-
T Consensus 215 ~~~~----------------------~~~------------~--------------------------------v~~v-- 226 (361)
T 2gza_A 215 FLPD----------------------HPN------------H--------------------------------VHLF-- 226 (361)
T ss_dssp CCTT----------------------CSS------------E--------------------------------EEEE--
T ss_pred Cccc----------------------cCC------------E--------------------------------EEEe--
Confidence 0000 000 0 0000
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 313 MQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 313 ~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
...+....++++..++..|+.+|..+|+.+|+|||... .... +.+.+..-..|+|.++|..+ +...++|++.|..
T Consensus 227 ~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~---~~~~-~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 227 YPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGG---EAYD-FINVAASGHGGSITSCHAGS-CELTFERLALMVL 301 (361)
T ss_dssp CC----------CCHHHHHHHHTTSCCSEEEESCCCST---HHHH-HHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHT
T ss_pred ecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHH---HHHH-HHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHh
Confidence 00000001245557899999999999999999999862 2222 23333332347889999966 6778999998887
Q ss_pred CE
Q 048654 393 QK 394 (723)
Q Consensus 393 G~ 394 (723)
+.
T Consensus 302 ~~ 303 (361)
T 2gza_A 302 QN 303 (361)
T ss_dssp TS
T ss_pred cc
Confidence 63
No 233
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.09 E-value=3.1e-10 Score=124.85 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=29.0
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHH--HHcCCCCCcc
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNL--LAGDLSPTEG 552 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~--L~Gl~~p~~G 552 (723)
-|.+|++++|+||||||||||++. +.++.+++.|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 578999999999999999999994 4677777554
No 234
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.08 E-value=3.9e-14 Score=139.31 Aligned_cols=76 Identities=16% Similarity=0.098 Sum_probs=55.7
Q ss_pred ChHHHHHHHHHH------HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcEEEEEeCC-HHHHHhhCCEEEEEe
Q 048654 322 SGGWRMRISLAR------ALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKTLVVVSHD-RDFLNTVCTEIIHLH 391 (723)
Q Consensus 322 SGGqrQRvaLAr------AL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~TVIivsHd-l~~l~~iad~Ii~L~ 391 (723)
|+|++|++.++. +|+.+|....+|+ +||+..+.. ++.+..+ +.+||.+||. ++.+..+||+|+ +
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~ 169 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--T 169 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--H
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--h
Confidence 788888888888 8999999888884 899987777 6666554 4689999999 999999999999 9
Q ss_pred CCEEEEecCChhh
Q 048654 392 DQKLHFYRGNFDD 404 (723)
Q Consensus 392 ~G~i~~~~g~~~~ 404 (723)
+|+++ +.|+.+-
T Consensus 170 ~g~~~-~~~~~~~ 181 (189)
T 2bdt_A 170 NPRFI-FCMAGDP 181 (189)
T ss_dssp CGGGS-CC-----
T ss_pred CCcEE-EeecCCc
Confidence 99985 4466543
No 235
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.07 E-value=7e-12 Score=140.05 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=41.6
Q ss_pred eceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEEC
Q 048654 514 SDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS 557 (723)
Q Consensus 514 ~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~ 557 (723)
+++||++.+|++++|+|+||||||||+++|+|+++|++|+|.+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 57899999999999999999999999999999999999999874
No 236
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.05 E-value=2.3e-12 Score=123.89 Aligned_cols=53 Identities=17% Similarity=-0.044 Sum_probs=46.5
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCc
Q 048654 168 IDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKN 221 (723)
Q Consensus 168 l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~ 221 (723)
..++++.|+++.+++++||+|++|++++|+||||||||||+++|+|+. |..|.
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~ 62 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGN 62 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSC
T ss_pred CHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCe
Confidence 346677788888999999999999999999999999999999999987 65443
No 237
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.05 E-value=7.9e-12 Score=128.32 Aligned_cols=46 Identities=24% Similarity=0.244 Sum_probs=39.8
Q ss_pred cCCCCCCCChHHHHHHHHHHHH-ccCCCEEEEe----CCCCCCCHHHHHHHHHHHhhc
Q 048654 314 QGRPTKSFSGGWRMRISLARAL-FVQPTLLLLD----EPTNHLDLRAVLWLEEYLCRW 366 (723)
Q Consensus 314 ~~~~~~~LSGGqrQRvaLArAL-~~~P~lLLLD----EPT~~LD~~~~~~L~~~L~~~ 366 (723)
.++++..||| |+ +|| +.+|++++|| |||++||+.+...+.+.|..+
T Consensus 146 ~~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~ 196 (246)
T 2bbw_A 146 SRRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQY 196 (246)
T ss_dssp HTEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHH
T ss_pred HcCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHH
Confidence 3577889999 66 778 9999999999 999999999888888888765
No 238
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.05 E-value=2.1e-13 Score=145.99 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHHHHHh
Q 048654 619 KLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRLISRV 682 (723)
Q Consensus 619 ~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~~~~~ 682 (723)
+||+||+||+..+++++.+|+++ ||| ..+.+.|++++ .+||++||+...+..+
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGG
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHH
Confidence 79999999999999999999988 999 56666666654 5899999954434333
No 239
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.03 E-value=4.1e-11 Score=128.52 Aligned_cols=167 Identities=13% Similarity=0.062 Sum_probs=91.6
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce-----------------eEEEEccccccccCccccHHHH
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL-----------------RIGRYSQHFVDLLTMEETPVSY 582 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~-----------------~ig~~~q~~~~~~~~~~~~~~~ 582 (723)
..+|++++|+||||||||||+++|+|+++|++|+|.+.+.. .+.+++|... +....+....
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~--~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYG--ADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTT--CCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEecccc--CCHHHHHHHH
Confidence 46899999999999999999999999999999999865421 1223333211 0000000000
Q ss_pred HH---hhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHH
Q 048654 583 LL---RLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALA 659 (723)
Q Consensus 583 ~~---~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~ 659 (723)
+. ....+. -+++..|+.+.. ...+.+| -.+++++..++.+++||.+|. .|.. ..+.
T Consensus 204 l~~~~~~~~d~----------vliDtaG~~~~~-~~l~~eL-------~~i~ral~~de~llvLDa~t~-~~~~--~~~~ 262 (328)
T 3e70_C 204 IQHAKARGIDV----------VLIDTAGRSETN-RNLMDEM-------KKIARVTKPNLVIFVGDALAG-NAIV--EQAR 262 (328)
T ss_dssp HHHHHHHTCSE----------EEEEECCSCCTT-TCHHHHH-------HHHHHHHCCSEEEEEEEGGGT-THHH--HHHH
T ss_pred HHHHHhccchh----------hHHhhccchhHH-HHHHHHH-------HHHHHHhcCCCCEEEEecHHH-HHHH--HHHH
Confidence 00 000000 001122322111 1122233 348999999999999996664 4332 2222
Q ss_pred HHHHHcCceEEEEecCHH---------HHHHhcCcCCCcEEEEEECCeEEe--cCCCHHHHHHHHH
Q 048654 660 DALDEFTGGVVLVSHDSR---------LISRVCDDEERSEIWVVENGTVSR--FPGTFEEYKEDLQ 714 (723)
Q Consensus 660 ~~L~~~~~tVIivSHD~~---------~~~~~~d~~~~drv~vl~~G~i~~--~~g~~~~~~~~~~ 714 (723)
.+-...+.++|++||.-. .+.... -.|.++..|+.+. ..-+++.+...++
T Consensus 263 ~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~-----~pi~~i~~Ge~v~dl~~~~~~~~~~~ll 323 (328)
T 3e70_C 263 QFNEAVKIDGIILTKLDADARGGAALSISYVID-----APILFVGVGQGYDDLRPFEKEWFLERIF 323 (328)
T ss_dssp HHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHT-----CCEEEEECSSSTTCEEECCHHHHHHHHT
T ss_pred HHHHhcCCCEEEEeCcCCccchhHHHHHHHHHC-----CCEEEEeCCCCccccccCCHHHHHHHHh
Confidence 222345678999999542 233332 3688898887531 1124555555443
No 240
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.03 E-value=9.4e-13 Score=149.31 Aligned_cols=161 Identities=12% Similarity=0.117 Sum_probs=96.6
Q ss_pred cceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce--------eEEEEccccc--c---------
Q 048654 511 FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL--------RIGRYSQHFV--D--------- 571 (723)
Q Consensus 511 ~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~--------~ig~~~q~~~--~--------- 571 (723)
.++++++|.|..|+.++|+|||||||||||++|+|+++|+.|.|.+.+.. .+++..+... .
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 46788999999999999999999999999999999999999999875532 1233332111 0
Q ss_pred -------------ccCccccHHHHHHhhCCCCCCCc--HHHHHHHHHHhC-----CCCCCCC---c---CCCCCCCHHHH
Q 048654 572 -------------LLTMEETPVSYLLRLHPDQEGLS--KQEAVRAKLGKF-----GLPSHNH---L---TPIAKLSGGQK 625 (723)
Q Consensus 572 -------------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~L~~~-----gl~~~~~---~---~~i~~LSGGqk 625 (723)
.+...+. ...+........+.. ....+..++.++ ++..... . .....+|+||+
T Consensus 328 ~~LR~~PD~iivgEir~~E~-~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G~~ 406 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREA-QTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGNTR 406 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHH-HHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSSCE
T ss_pred HhhccCCCeEEeCCcCHHHH-HHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCCCc
Confidence 0011110 111111100000000 000122233332 2221100 0 12245899999
Q ss_pred HHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc---CceEEE--EecCHHHHHHhcC
Q 048654 626 ARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF---TGGVVL--VSHDSRLISRVCD 684 (723)
Q Consensus 626 qRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~---~~tVIi--vSHD~~~~~~~~d 684 (723)
||++++ ++ | |+|||+.+...+.+.|.++ +.++|+ +||+++.+...|+
T Consensus 407 ~R~~~a----------i~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 407 LRRTKE----------VN-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp EEEEEE----------EE-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred eEEEEE----------EE-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 998764 12 7 9999998777666666655 247765 8999999998885
No 241
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.02 E-value=2.4e-12 Score=125.32 Aligned_cols=120 Identities=18% Similarity=0.207 Sum_probs=72.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC---cceEEECCcee---------------EE----EEccccccccCccccHHH
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDLSPT---EGEVRRSQKLR---------------IG----RYSQHFVDLLTMEETPVS 581 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~~p~---~G~I~~~~~~~---------------ig----~~~q~~~~~~~~~~~~~~ 581 (723)
++++|+|+||||||||+++|+|+++|+ .|.|.+++... ++ +++|+.... +.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--i~----- 75 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--IR----- 75 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE--EE-----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE--Ee-----
Confidence 589999999999999999999999998 89998765321 11 222211000 00
Q ss_pred HHHhhCCCCCCCcHHH--HHHHHHHh-C-CCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeE-------EeccCCC--
Q 048654 582 YLLRLHPDQEGLSKQE--AVRAKLGK-F-GLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHIL-------LLDEPTN-- 648 (723)
Q Consensus 582 ~~~~~~~~~~~~~~~~--~~~~~L~~-~-gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lL-------lLDEPT~-- 648 (723)
. + .... .+.+++.. + |+.. .-...|||||+||++|||+++.+|+|. +-|.|..
T Consensus 76 -------~--~-~~~~~a~l~~~i~~~l~g~dt----~i~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~~~~ 141 (171)
T 2f1r_A 76 -------R--V-SEEEGNDLDWIYERYLSDYDL----VITEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGH 141 (171)
T ss_dssp -------E--C-CHHHHTCHHHHHHHHTTTCSE----EEEESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCCSSS
T ss_pred -------c--C-ChhhhhCHHHHHHhhCCCCCE----EEECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCcccC
Confidence 0 0 0111 24445554 4 3321 122359999999999999999999873 2355532
Q ss_pred -CCCHHHHHHHHHHHHH
Q 048654 649 -HLDMQSIDALADALDE 664 (723)
Q Consensus 649 -~LD~~s~~~l~~~L~~ 664 (723)
-+|......+.++|.+
T Consensus 142 ~~f~~~~~~~~a~~i~~ 158 (171)
T 2f1r_A 142 KWFRRDEVERIAEFILS 158 (171)
T ss_dssp CEECTTCHHHHHHHHHH
T ss_pred cccCcccHHHHHHHHHH
Confidence 2344456666666644
No 242
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.00 E-value=4.2e-13 Score=148.45 Aligned_cols=138 Identities=17% Similarity=0.140 Sum_probs=86.2
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce--------------
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL-------------- 560 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~-------------- 560 (723)
++.++++++.|+. ..+|+++ + ..+|++++|+|||||||||||++|+|+++|++|+|...+..
T Consensus 143 ~~~l~~Lg~~~~~--~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 143 RLDLHSLGMTAHN--HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCCGGGSCCCHHH--HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCCHHHcCCCHHH--HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc
Confidence 4566777776643 2467888 5 38899999999999999999999999999999999764321
Q ss_pred -eEEEEc---------cccccccCcc-----ccHHHHHHh-hCCC-----CCCCcHHHHHHHHHHhCCCCCCCCcCCCCC
Q 048654 561 -RIGRYS---------QHFVDLLTME-----ETPVSYLLR-LHPD-----QEGLSKQEAVRAKLGKFGLPSHNHLTPIAK 619 (723)
Q Consensus 561 -~ig~~~---------q~~~~~~~~~-----~~~~~~~~~-~~~~-----~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~ 619 (723)
.+++.+ |.+. .+.+. ++....+.. .... ...... ..+...|..+|+.... .+..
T Consensus 219 ~~~g~~f~~~lr~~Lrq~pd-~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~-~~~i~rL~~lgl~~~~---~~~~ 293 (418)
T 1p9r_A 219 PRVDMTFARGLRAILRQDPD-VVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTA-VGAVTRLRDMGIEPFL---ISSS 293 (418)
T ss_dssp GGGTBCHHHHHHHHGGGCCS-EEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSS-HHHHHHHHHHTCCHHH---HHHH
T ss_pred cccCcCHHHHHHHHhccCCC-eEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhH-HHHHHHHHHcCCcHHH---HHHH
Confidence 011211 2211 11011 121111111 1000 000011 2233457778886432 4578
Q ss_pred CCHHHHHHHHHHHHHccCCCeEEe
Q 048654 620 LSGGQKARVVFTSISMSKPHILLL 643 (723)
Q Consensus 620 LSGGqkqRv~lAral~~~p~lLlL 643 (723)
|||||+|| |||+|+.+|+++.-
T Consensus 294 LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 294 LLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHH--hhhhhcCCCCccCC
Confidence 99999999 99999999998763
No 243
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.00 E-value=3.2e-12 Score=127.98 Aligned_cols=141 Identities=18% Similarity=0.096 Sum_probs=80.3
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhh-CCCCCCCcHHHH
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRL-HPDQEGLSKQEA 598 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 598 (723)
..+|++++|+||||||||||+++|+|+++|. | ..+++++++-.. +........... ............
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g-------~~~g~v~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G-------LPAEVVPMDGFH---LDNRLLEPRGLLPRKGAPETFDFEG 87 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T-------CCEEEEESGGGB---CCHHHHGGGTCGGGTTSGGGBCHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C-------CceEEEecCCCc---CCHHHHHHhcccccCCCCchhhHHH
Confidence 4789999999999999999999999999875 3 123444432111 000000000000 000000001122
Q ss_pred HHHHHHhCCCCC----CCCcCCCCCCCHHHHHHHHHH-HHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEe
Q 048654 599 VRAKLGKFGLPS----HNHLTPIAKLSGGQKARVVFT-SISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVS 673 (723)
Q Consensus 599 ~~~~L~~~gl~~----~~~~~~i~~LSGGqkqRv~lA-ral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivS 673 (723)
+...+..+.... ....+. ..+|+||+|+++++ ++++.++.++++|||.. ..|..+...+|+++
T Consensus 88 ~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~l~~~~d~~i~vd 155 (208)
T 3c8u_A 88 FQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RDLTAIWDVSIRLE 155 (208)
T ss_dssp HHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GGGGGTCSEEEEEC
T ss_pred HHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HHHHHhcCEEEEEe
Confidence 233333321110 011122 35799999999998 88888888888888841 11334445789999
Q ss_pred cCHHH-HHHhc
Q 048654 674 HDSRL-ISRVC 683 (723)
Q Consensus 674 HD~~~-~~~~~ 683 (723)
++.+. +.+++
T Consensus 156 ~~~~~~~~R~~ 166 (208)
T 3c8u_A 156 VPMADLEARLV 166 (208)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99887 55555
No 244
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.00 E-value=3e-10 Score=107.90 Aligned_cols=42 Identities=19% Similarity=0.156 Sum_probs=31.7
Q ss_pred HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc---CcE-EEEEeCC
Q 048654 334 ALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW---KKT-LVVVSHD 376 (723)
Q Consensus 334 AL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~---~~T-VIivsHd 376 (723)
+++.+|+|||||||++ ++...+..|.+++..+ +.+ ||++||.
T Consensus 79 ~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 3467899999999998 6655577777777643 567 8888884
No 245
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.99 E-value=2e-12 Score=138.26 Aligned_cols=53 Identities=21% Similarity=0.157 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHHHHhh
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDFLNTV 383 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~l~~i 383 (723)
+||+||+||+..+++|+.+|+++ ||| ..+.+.|+++ +.|||++||+...+..+
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGG
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHH
Confidence 69999999999999999999988 999 4555555544 57999999965444443
No 246
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.99 E-value=3e-11 Score=133.42 Aligned_cols=57 Identities=26% Similarity=0.260 Sum_probs=43.1
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH---HHHHHhhcCcEEEEEeC
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLW---LEEYLCRWKKTLVVVSH 375 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~---L~~~L~~~~~TVIivsH 375 (723)
..++.+||+|++|++++|++|+..|.||+| |.||+..... +.+.+...+.++|+||.
T Consensus 247 ~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 247 DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 356778999999999999999999999999 9999865432 33333334556666663
No 247
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.94 E-value=7.4e-10 Score=117.58 Aligned_cols=98 Identities=18% Similarity=0.215 Sum_probs=73.2
Q ss_pred eEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcH
Q 048654 516 VDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSK 595 (723)
Q Consensus 516 isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (723)
++|...+|++++|+|+|||||||++..|++.+.+..|+|.+... +.. .. . .
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~--------D~~------r~-~--------------a 147 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA--------DTF------RA-A--------------A 147 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE--------CTT------CH-H--------------H
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc--------ccc------cH-H--------------H
Confidence 45556789999999999999999999999999988887764321 110 00 0 1
Q ss_pred HHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHH---HHHHHHccCCCeEEeccCCC
Q 048654 596 QEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARV---VFTSISMSKPHILLLDEPTN 648 (723)
Q Consensus 596 ~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv---~lAral~~~p~lLlLDEPT~ 648 (723)
.+.+..+++.++++. +..+|||+.+++ +|++++..+|+++|+|+|..
T Consensus 148 ~eqL~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 148 IEQLKIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 122445566667642 236789999999 89999999999999999975
No 248
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.93 E-value=4.5e-11 Score=126.07 Aligned_cols=125 Identities=14% Similarity=-0.005 Sum_probs=74.2
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhh------CCC--CCC
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRL------HPD--QEG 592 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~------~~~--~~~ 592 (723)
..+.+|+|+|++|||||||+++|.+++.+. |. ....+.+++|+.+. + .......+... ... ...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~----~~~~~~iv~~D~f~-~--~~~~~~~l~~~~~~~~l~~~~g~p~ 100 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG----GEKSIGYASIDDFY-L--THEDQLKLNEQFKNNKLLQGRGLPG 100 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG----GGSCEEEEEGGGGB-C--CHHHHHHHHHHTTTCGGGSSSCSTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC----CCceEEEecccccc-C--ChHHHHHHhccccccchhhhccCcc
Confidence 357899999999999999999999998763 20 01123343665321 1 11111111110 000 011
Q ss_pred CcHHHHHHHHHHhCCCCC-----CC--CcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHH
Q 048654 593 LSKQEAVRAKLGKFGLPS-----HN--HLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQ 653 (723)
Q Consensus 593 ~~~~~~~~~~L~~~gl~~-----~~--~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~ 653 (723)
..+...+.+.+..+.-.. .. ....-..+||||+||+.+|++...+|+|||+||||+++|+.
T Consensus 101 a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 101 THDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred hhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 123445566666664320 00 01112579999999999974333389999999999999985
No 249
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.92 E-value=5.1e-10 Score=119.97 Aligned_cols=170 Identities=14% Similarity=0.099 Sum_probs=90.1
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHH--hhhcCcCC
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA--SLQNSTSV 265 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~ 265 (723)
.++|++++|+||||||||||+++|+|++.+ ..++|.+.+.++..... . .+...+...++ ++.+..
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a--~-------eql~~~~~~~gv~~v~q~~-- 192 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGA--I-------EQLEEHAKRIGVKVIKHSY-- 192 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTH--H-------HHHHHHHHHTTCEEECCCT--
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccch--H-------HHHHHHHHHcCceEEeccc--
Confidence 368999999999999999999999998654 44567777766543221 1 11111222222 111110
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEe
Q 048654 266 DGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLD 345 (723)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLD 345 (723)
.......+.+.+..... .... .-+++..|..+ .... =..+.-.|++++..++.+++||
T Consensus 193 ----~~~p~~~v~e~l~~~~~--~~~d--------~vliDtaG~~~-~~~~-------l~~eL~~i~ral~~de~llvLD 250 (328)
T 3e70_C 193 ----GADPAAVAYDAIQHAKA--RGID--------VVLIDTAGRSE-TNRN-------LMDEMKKIARVTKPNLVIFVGD 250 (328)
T ss_dssp ----TCCHHHHHHHHHHHHHH--HTCS--------EEEEEECCSCC-TTTC-------HHHHHHHHHHHHCCSEEEEEEE
T ss_pred ----cCCHHHHHHHHHHHHHh--ccch--------hhHHhhccchh-HHHH-------HHHHHHHHHHHhcCCCCEEEEe
Confidence 00111111111110000 0000 00112223211 1111 2333445999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCH---------HHHHhhCCEEEEEeCCEE
Q 048654 346 EPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDR---------DFLNTVCTEIIHLHDQKL 395 (723)
Q Consensus 346 EPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl---------~~l~~iad~Ii~L~~G~i 395 (723)
.+|. .|. ...+..+-+..+.|+|++||.- +.+....-.|.++..|+.
T Consensus 251 a~t~-~~~--~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 251 ALAG-NAI--VEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp GGGT-THH--HHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred cHHH-HHH--HHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 6665 333 2333333345688999999943 344455567888888764
No 250
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.91 E-value=1.1e-11 Score=135.90 Aligned_cols=156 Identities=13% Similarity=0.176 Sum_probs=99.0
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHc------------CCCCCcceEEECCce------------eE---EEEcccc--
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAG------------DLSPTEGEVRRSQKL------------RI---GRYSQHF-- 569 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~G------------l~~p~~G~I~~~~~~------------~i---g~~~q~~-- 569 (723)
++.+|.+++|+|+||+|||||+++|+| .+.|+.|.|.+.+.. .+ .++.+..
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 567899999876521 11 1222111
Q ss_pred ccccCccccHH-HHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCC--CeEEeccC
Q 048654 570 VDLLTMEETPV-SYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKP--HILLLDEP 646 (723)
Q Consensus 570 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p--~lLlLDEP 646 (723)
....+..+... .++..... +..++.-++... ...+..+||+. +| +++++|||
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~----------~d~il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ildee 150 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA----------VDAIYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIVDE 150 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT----------CSEEEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH----------HHHHHHHHhccc---cceeeeecccc------------Ccchhhhhchhh
Confidence 01111111100 00000000 000111112211 23455577753 89 99999999
Q ss_pred CCCCCHHHHHHHHHHHHHc-C---ceEEEEecCHHHHHHhcCcCCCcEEE-EEECC-eEEecCCCHH
Q 048654 647 TNHLDMQSIDALADALDEF-T---GGVVLVSHDSRLISRVCDDEERSEIW-VVENG-TVSRFPGTFE 707 (723)
Q Consensus 647 T~~LD~~s~~~l~~~L~~~-~---~tVIivSHD~~~~~~~~d~~~~drv~-vl~~G-~i~~~~g~~~ 707 (723)
+.++|+.......+.+... . .|| ++|+...+..+|+ ++. +|++| +++. .|+..
T Consensus 151 l~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~-----~i~~~L~~G~~~~~-~~~~~ 209 (392)
T 1ni3_A 151 LLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIE-----KVYQYLTETKQPIR-KGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHH-----HHHHHHHTTCSCGG-GSCCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHH-----HHHHHhccCCceee-cCCCC
Confidence 9999999999988888877 3 344 3999999999994 888 89999 8863 35543
No 251
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.90 E-value=1.6e-09 Score=114.50 Aligned_cols=131 Identities=21% Similarity=0.125 Sum_probs=87.3
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHh
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSA 245 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~ 245 (723)
+.++++++.|+... ++++|+ +|++++|+|+||+||||++..|++...+ ..+++.+++.++.. ....
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~---~~~~----- 142 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQR---PAAR----- 142 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSC---HHHH-----
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCccc---HhHH-----
Confidence 45567777786543 788888 9999999999999999999999987543 23456666544321 1000
Q ss_pred hHHHHHHHHHHHhhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHH
Q 048654 246 HEELVKLREEVASLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGW 325 (723)
Q Consensus 246 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGq 325 (723)
.+ + ..+.+..|+.-.... ...+-.+
T Consensus 143 -~q--------------------------------l-------------------~~~~~~~~l~~~~~~---~~~~p~~ 167 (295)
T 1ls1_A 143 -EQ--------------------------------L-------------------RLLGEKVGVPVLEVM---DGESPES 167 (295)
T ss_dssp -HH--------------------------------H-------------------HHHHHHHTCCEEECC---TTCCHHH
T ss_pred -HH--------------------------------H-------------------HHhcccCCeEEEEcC---CCCCHHH
Confidence 00 0 001122344311110 0123345
Q ss_pred HHHHHHHHHHccCCCEEEEeCC-CCCCCHHHHHHHHHHHhh
Q 048654 326 RMRISLARALFVQPTLLLLDEP-TNHLDLRAVLWLEEYLCR 365 (723)
Q Consensus 326 rQRvaLArAL~~~P~lLLLDEP-T~~LD~~~~~~L~~~L~~ 365 (723)
.+|.+|++++..+++++|+||| +.++|......+..++..
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhh
Confidence 6789999999899999999999 999999888888776654
No 252
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.88 E-value=4.8e-11 Score=125.92 Aligned_cols=39 Identities=13% Similarity=0.018 Sum_probs=32.8
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHH
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLR 354 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~ 354 (723)
.+...+||||+||+.+|++...+|+||||||||++||+.
T Consensus 130 ~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 130 KYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI 168 (290)
T ss_dssp CEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred cCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence 445789999999999984333399999999999999985
No 253
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.88 E-value=3e-09 Score=112.51 Aligned_cols=136 Identities=12% Similarity=0.110 Sum_probs=85.6
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHH
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVR 600 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (723)
.+|++++|+|+||+||||++..|++.+.+..|. ++.++.++... .. ..+.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-------~V~lv~~D~~r-----~~----------------a~eqL~ 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-------KIAFITTDTYR-----IA----------------AVEQLK 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------CEEEEECCCSS-----TT----------------HHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-------EEEEEecCccc-----ch----------------HHHHHH
Confidence 479999999999999999999999999887772 34445443210 00 112223
Q ss_pred HHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC-----ceEEEE--e
Q 048654 601 AKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT-----GGVVLV--S 673 (723)
Q Consensus 601 ~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~-----~tVIiv--S 673 (723)
.+...+|++... ..+. ...+.+|++ +.+|+++|+| |+|+|......+.++..-+. .+++++ |
T Consensus 155 ~~~~~~gl~~~~------~~~~-~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at 223 (296)
T 2px0_A 155 TYAELLQAPLEV------CYTK-EEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSAT 223 (296)
T ss_dssp HHHTTTTCCCCB------CSSH-HHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETT
T ss_pred HHHHhcCCCeEe------cCCH-HHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECC
Confidence 334445554211 1223 344666664 4899999999 99999876555544433322 235555 9
Q ss_pred cCHHHHHHhcCcCCCcEEEEEECCeEE
Q 048654 674 HDSRLISRVCDDEERSEIWVVENGTVS 700 (723)
Q Consensus 674 HD~~~~~~~~d~~~~drv~vl~~G~i~ 700 (723)
|+...+.++|+ ++..+..+.++
T Consensus 224 ~~~~~~~~~~~-----~~~~l~~~giV 245 (296)
T 2px0_A 224 AKYEDMKHIVK-----RFSSVPVNQYI 245 (296)
T ss_dssp BCHHHHHHHTT-----TTSSSCCCEEE
T ss_pred CCHHHHHHHHH-----HHhcCCCCEEE
Confidence 99999998885 33334555554
No 254
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.86 E-value=9.4e-10 Score=123.22 Aligned_cols=46 Identities=24% Similarity=0.227 Sum_probs=43.5
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
+|++|||+|.+ ++++|+|||||||||||++|+|+++|++|+|.+.+
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 64 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRN 64 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCC
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECC
Confidence 69999999999 99999999999999999999999999999997643
No 255
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.85 E-value=1.1e-08 Score=103.90 Aligned_cols=56 Identities=20% Similarity=0.103 Sum_probs=41.6
Q ss_pred cCCCEEEEeCCCCCC--CHHHH----HHHHHHHhhcCcEEEEEeCCHHH--------HHhhCCEEEEEeC
Q 048654 337 VQPTLLLLDEPTNHL--DLRAV----LWLEEYLCRWKKTLVVVSHDRDF--------LNTVCTEIIHLHD 392 (723)
Q Consensus 337 ~~P~lLLLDEPT~~L--D~~~~----~~L~~~L~~~~~TVIivsHdl~~--------l~~iad~Ii~L~~ 392 (723)
.+|+++++|+|++.+ |+... ..|.+.+++.+.|||+++|.... +.++||.|++|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 55222 33444455668899999998765 5678999999974
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.85 E-value=2.9e-11 Score=120.97 Aligned_cols=30 Identities=33% Similarity=0.252 Sum_probs=27.2
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHhCCCC
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKIP 217 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~ 217 (723)
.++|++++|+||||||||||+++|+|++.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999999998653
No 257
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.84 E-value=5.1e-12 Score=139.77 Aligned_cols=63 Identities=19% Similarity=0.276 Sum_probs=47.9
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeee
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEV 231 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~ 231 (723)
.+.++++++.|+...+|+++ +. .+|++++|+|||||||||||++|+|+..+. .+.|.+.+..+
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~--~g~I~~~ed~i 205 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSS--ERNILTVEDPI 205 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCT--TSCEEEEESSC
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEEecccc
Confidence 45666777767666788888 53 889999999999999999999999986554 45555555443
No 258
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.84 E-value=6.9e-09 Score=111.54 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=37.1
Q ss_pred HccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc--CcEEEEEeCCHHH
Q 048654 335 LFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW--KKTLVVVSHDRDF 379 (723)
Q Consensus 335 L~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~--~~TVIivsHdl~~ 379 (723)
+..+|+|||||||++ ||+.+...|.+.|.+. +.++|++||+++.
T Consensus 131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 131 LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp ---CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 888999999999999 9999999999999876 4689999999753
No 259
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.82 E-value=2.6e-10 Score=121.00 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=71.2
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE---CCc----------e-eEEEEccccc-------cccCcccc
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR---SQK----------L-RIGRYSQHFV-------DLLTMEET 578 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~---~~~----------~-~ig~~~q~~~-------~~~~~~~~ 578 (723)
+..|++++|+||||||||||+|+|+ +++|+.|+|.. .++ . .+||++|.+. ..++. ++
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~ 239 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-RE 239 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HH
Confidence 4569999999999999999999999 99999999987 442 1 3578887541 22333 33
Q ss_pred HHHHHH------hhCCC-CCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHH
Q 048654 579 PVSYLL------RLHPD-QEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 579 ~~~~~~------~~~~~-~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAr 632 (723)
...++. ..+.. .........+.++|+.++|......+++..|||.+++++.|||
T Consensus 240 l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 240 VRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 211110 00111 0011123468899999999752334566889998888899886
No 260
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.82 E-value=3.1e-12 Score=137.64 Aligned_cols=165 Identities=16% Similarity=0.155 Sum_probs=97.9
Q ss_pred EEEEEEEcCCCcccceeceEEEEecC-------cEEEEEcCCCCcHHHHHHHHHcCC----CCCcceEEECC--------
Q 048654 498 LIEVSFSYPNREDFKLSDVDVGIDMG-------TRVAIVGPNGAGKSTLLNLLAGDL----SPTEGEVRRSQ-------- 558 (723)
Q Consensus 498 ~~~ls~~y~~~~~~~L~~isl~i~~G-------e~vaIvGpNGsGKSTLlk~L~Gl~----~p~~G~I~~~~-------- 558 (723)
.++++..|++ ..+++++++.|..| +.++|+||||+|||||+++|+|.+ .+++|.+...+
T Consensus 21 ~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 21 PKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp CSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred CccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 3455666764 24789999999877 899999999999999999999988 67777665322
Q ss_pred ---ceeEEEEccccccccCccccHHHHHHhhCCCC--C-CCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHH
Q 048654 559 ---KLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQ--E-GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTS 632 (723)
Q Consensus 559 ---~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAr 632 (723)
...+.+++|...-.....+... ..+..+... . .......+...+..++|.. . .+.+..||+|++||+.++
T Consensus 99 ~~~~~~v~~iDE~~~l~~~~~e~L~-~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-a-t~~~~~Ls~~l~sR~~l~- 174 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNKAVEELLY-SAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-A-TTRSGLLSSPLRSRFGII- 174 (334)
T ss_dssp HCCTTCEEEEETGGGCCHHHHHHHH-HHHHTSCCCC---------------CCCEEEE-E-ESCGGGSCHHHHTTCSEE-
T ss_pred HccCCCEEEEcchhhcCHHHHHHHH-HHHHhcccceeeccCcccccccccCCCeEEEE-e-cCCcccCCHHHHHhcCce-
Confidence 2246777764211101111111 111111100 0 0001233445566666643 2 345589999999998654
Q ss_pred HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHHHHHhcC
Q 048654 633 ISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCD 684 (723)
Q Consensus 633 al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~~~~~~d 684 (723)
.+||+.+...+.++|++.... .-++|+.+.+..+|+
T Consensus 175 ---------------~~Ld~~~~~~l~~iL~~~~~~-~~~~~~~~~~~~ia~ 210 (334)
T 1in4_A 175 ---------------LELDFYTVKELKEIIKRAASL-MDVEIEDAAAEMIAK 210 (334)
T ss_dssp ---------------EECCCCCHHHHHHHHHHHHHH-TTCCBCHHHHHHHHH
T ss_pred ---------------eeCCCCCHHHHHHHHHHHHHH-cCCCcCHHHHHHHHH
Confidence 677877778888877665311 124788888877763
No 261
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.82 E-value=4.5e-11 Score=116.30 Aligned_cols=39 Identities=18% Similarity=0.065 Sum_probs=27.7
Q ss_pred cEEEEECCCCccHHHHHHHHHhCCCCCC-CcEEEEEeeee
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAWRKIPVP-KNIDVLLVEQE 230 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G~~~~~~-~~~~i~~~~q~ 230 (723)
++++|+|+||||||||+++|+|++.+.. ..+.|.+.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 5899999999999999999999865431 14556554433
No 262
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.81 E-value=7e-09 Score=110.08 Aligned_cols=98 Identities=21% Similarity=0.147 Sum_probs=68.4
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHhhhcCc
Q 048654 184 TSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNST 263 (723)
Q Consensus 184 isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 263 (723)
++|...+|++++|+|+|||||||+++.|++.+.+. .+++.+++.+... ...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r--~~a------------------------- 147 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFR--AAA------------------------- 147 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTC--HHH-------------------------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEcccccc--HHH-------------------------
Confidence 45667889999999999999999999999875432 3456665543211 000
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHH---HHHHHHccCCC
Q 048654 264 SVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRI---SLARALFVQPT 340 (723)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRv---aLArAL~~~P~ 340 (723)
..+...+++.+|+. . +..+|||+.+++ +|++++..+|+
T Consensus 148 ---------------------------------~eqL~~~~~~~gl~-~-----~~~~s~~~~~~v~~~al~~a~~~~~d 188 (306)
T 1vma_A 148 ---------------------------------IEQLKIWGERVGAT-V-----ISHSEGADPAAVAFDAVAHALARNKD 188 (306)
T ss_dssp ---------------------------------HHHHHHHHHHHTCE-E-----ECCSTTCCHHHHHHHHHHHHHHTTCS
T ss_pred ---------------------------------HHHHHHHHHHcCCc-E-----EecCCccCHHHHHHHHHHHHHhcCCC
Confidence 00011223344553 1 235789999999 99999999999
Q ss_pred EEEEeCCCC
Q 048654 341 LLLLDEPTN 349 (723)
Q Consensus 341 lLLLDEPT~ 349 (723)
++|+|+|..
T Consensus 189 vvIiDtpg~ 197 (306)
T 1vma_A 189 VVIIDTAGR 197 (306)
T ss_dssp EEEEEECCC
T ss_pred EEEEECCCc
Confidence 999999974
No 263
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.78 E-value=8.2e-09 Score=109.12 Aligned_cols=137 Identities=16% Similarity=0.218 Sum_probs=84.2
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHhhhcCcCCCCC
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQNSTSVDGE 268 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 268 (723)
.+|++++|+|+||+||||++..|++.+.+..| ..|.+++.+.... ...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~--~a~----------------------------- 150 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRI--AAV----------------------------- 150 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSST--THH-----------------------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccc--hHH-----------------------------
Confidence 47999999999999999999999987543222 1456655443210 000
Q ss_pred CCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCC
Q 048654 269 EDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPT 348 (723)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT 348 (723)
+.+ ..+.+.+|+.... ..+ +...+.+|++ +.+|+++|+| |
T Consensus 151 ----------eqL-------------------~~~~~~~gl~~~~------~~~-~~~l~~al~~--~~~~dlvIiD--T 190 (296)
T 2px0_A 151 ----------EQL-------------------KTYAELLQAPLEV------CYT-KEEFQQAKEL--FSEYDHVFVD--T 190 (296)
T ss_dssp ----------HHH-------------------HHHHTTTTCCCCB------CSS-HHHHHHHHHH--GGGSSEEEEE--C
T ss_pred ----------HHH-------------------HHHHHhcCCCeEe------cCC-HHHHHHHHHH--hcCCCEEEEe--C
Confidence 000 0011123332111 112 3445666665 4999999999 9
Q ss_pred CCCCHHHHHHHHHHHhhc----C-cEEEEE--eCCHHHHHhhCCEEEEEeCCEEEE
Q 048654 349 NHLDLRAVLWLEEYLCRW----K-KTLVVV--SHDRDFLNTVCTEIIHLHDQKLHF 397 (723)
Q Consensus 349 ~~LD~~~~~~L~~~L~~~----~-~TVIiv--sHdl~~l~~iad~Ii~L~~G~i~~ 397 (723)
+++|+.....+.++..-. . .+++++ +|..+.+.++|+++..+..+.++.
T Consensus 191 ~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 191 AGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred CCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 999987655444433221 1 245555 999999999999887777777764
No 264
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.77 E-value=2.3e-08 Score=111.87 Aligned_cols=48 Identities=25% Similarity=0.198 Sum_probs=40.1
Q ss_pred eEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeee
Q 048654 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQE 230 (723)
Q Consensus 181 L~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~ 230 (723)
-+++||++.+|++++|||+||||||||+++|+|++.+. .|.|.+.+.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~--~G~V~l~g~D 330 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ--GKSVMLAAGD 330 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEECCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc--CCeEEEecCc
Confidence 46899999999999999999999999999999986543 4566665543
No 265
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.76 E-value=2.1e-09 Score=116.23 Aligned_cols=121 Identities=20% Similarity=0.157 Sum_probs=65.4
Q ss_pred eEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCC-CCCCcEEEEEe-eeeecCCChHHHHHHHHhhHHHHHHHHHHHh
Q 048654 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKI-PVPKNIDVLLV-EQEVVGDDRSAIQAVVSAHEELVKLREEVAS 258 (723)
Q Consensus 181 L~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~-~~~~~~~i~~~-~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 258 (723)
++++++. .+|++++|+||||||||||+++|+|... +..| .|... +...... . ...+..
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G--~I~~~~G~g~~tt-~----------------~~~i~~ 265 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTN--DVSNVSGLGQHTT-T----------------AARLYH 265 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC----------------C----------------CCEEEE
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccC--CccccCCCCccce-E----------------EEEEEE
Confidence 4445543 3799999999999999999999999865 5444 33322 1100000 0 000000
Q ss_pred hhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHH
Q 048654 259 LQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARAL 335 (723)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL 335 (723)
+.+.... .+...+.+. .+..+........+.++++.+|+.. ..+..+.+|| ||+||++||+++
T Consensus 266 v~q~~~l------~dtpgv~e~------~l~~l~~~e~~~~~~e~l~~~gl~~-f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 266 FPHGGDV------IDSPGVREF------GLWHLEPEQITQGFVEFHDYLGHCK-YRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp CTTSCEE------EECHHHHTC------CCCCCCHHHHHHTSGGGGGGTTCSS-STTCCSSSCT-TCHHHHHHHHTS
T ss_pred ECCCCEe------cCcccHHHh------hhcCCCHHHHHHHHHHHHHHcCCch-hcCCCcccCC-HHHHHHHHHhcC
Confidence 1000000 000000000 0001122334456778888999864 4578999999 999999999875
No 266
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.74 E-value=1.3e-09 Score=122.96 Aligned_cols=176 Identities=13% Similarity=0.098 Sum_probs=100.2
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHHh--CCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHHhhh
Q 048654 183 STSVRISHGKRYGLVGPNGMGKSTLLKLLAW--RKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVASLQ 260 (723)
Q Consensus 183 ~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G--~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 260 (723)
.+++++..+.++.|+|++||||||++++|.. +....|+...+.+++.. +.....+ ..++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK--~~el~~~-----------------~~lP 219 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK--MLELSVY-----------------EGIP 219 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS--SSGGGGG-----------------TTCT
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc--hhhhhhh-----------------ccCC
Confidence 4677888999999999999999999999875 34456777776655421 1100000 0011
Q ss_pred cCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCcccc-C-CCCCCCChHHHHHH---------
Q 048654 261 NSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQ-G-RPTKSFSGGWRMRI--------- 329 (723)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~-~-~~~~~LSGGqrQRv--------- 329 (723)
+.... ..... ......+..+ ..+.+.|. ++|..+|+..... + +....+||||+|+.
T Consensus 220 hl~~~-----Vvtd~---~~a~~~L~~~----~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~ 286 (512)
T 2ius_A 220 HLLTE-----VVTDM---KDAANALRWC----VNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSM 286 (512)
T ss_dssp TBSSS-----CBCSH---HHHHHHHHHH----HHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC------
T ss_pred cccce-----eecCH---HHHHHHHHHH----HHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccch
Confidence 11000 00000 0111111111 13345554 6788888753110 0 11235788887652
Q ss_pred -HHHHHHccCCC-EEEEeCCCCCCCHHH--HHHHHHHHh----hcCcEEEEEeCCHH-------HHHhhCCEEEEE
Q 048654 330 -SLARALFVQPT-LLLLDEPTNHLDLRA--VLWLEEYLC----RWKKTLVVVSHDRD-------FLNTVCTEIIHL 390 (723)
Q Consensus 330 -aLArAL~~~P~-lLLLDEPT~~LD~~~--~~~L~~~L~----~~~~TVIivsHdl~-------~l~~iad~Ii~L 390 (723)
.+|+++...|. +||+||+++.++... ...++..|. ..|.++|++||++. ...++.+||++-
T Consensus 287 ~~~a~~l~~lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lr 362 (512)
T 2ius_A 287 DAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFT 362 (512)
T ss_dssp ---CCBCCCCCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEEC
T ss_pred hccccccccCCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEE
Confidence 35677788898 899999999988432 222222232 23679999999987 566777777653
No 267
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.71 E-value=8e-08 Score=97.34 Aligned_cols=56 Identities=16% Similarity=0.053 Sum_probs=39.4
Q ss_pred cCCCeEEeccCCCCC--CHHHH----HHHHHHHHHcCceEEEEecCHHH--------HHHhcCcCCCcEEEEEEC
Q 048654 636 SKPHILLLDEPTNHL--DMQSI----DALADALDEFTGGVVLVSHDSRL--------ISRVCDDEERSEIWVVEN 696 (723)
Q Consensus 636 ~~p~lLlLDEPT~~L--D~~s~----~~l~~~L~~~~~tVIivSHD~~~--------~~~~~d~~~~drv~vl~~ 696 (723)
.+|+++++|+|+..+ |+... ..+.+.+++.+.+||+++|.... +.++|| .|++|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D-----~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVD-----GIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSS-----EEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEE-----EEEEEEE
Confidence 579999999999988 54332 33444445666799999998775 457774 8888863
No 268
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.71 E-value=2.6e-11 Score=126.86 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=84.1
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHH
Q 048654 175 ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLRE 254 (723)
Q Consensus 175 y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~ 254 (723)
|+...+|++++|.+++| ++|+||||||||||+++|+|...+ +.+.+.+.++.......... ....+.+
T Consensus 30 ~~~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~------~i~~vf~ 97 (274)
T 2x8a_A 30 VRNPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESER------AVRQVFQ 97 (274)
T ss_dssp HHSHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHH------HHHHHHH
T ss_pred hhCHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHH------HHHHHHH
Confidence 34556899999999999 999999999999999999987432 34444444432221111111 1111222
Q ss_pred HHHhh-hcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHH
Q 048654 255 EVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLAR 333 (723)
Q Consensus 255 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLAr 333 (723)
..... +...+.+ .... +......... +......++.+.+|||||+||+.|++
T Consensus 98 ~a~~~~p~i~~~D-------eid~-------------~~~~r~~~~~-------~~~~~~~~~~l~~Lsgg~~~~~~i~i 150 (274)
T 2x8a_A 98 RAKNSAPCVIFFD-------EVDA-------------LCPRRSDRET-------GASVRVVNQLLTEMDGLEARQQVFIM 150 (274)
T ss_dssp HHHHTCSEEEEEE-------TCTT-------------TCC----------------CTTHHHHHHHHHHTCCSTTCEEEE
T ss_pred HHHhcCCCeEeee-------hhhh-------------hhcccCCCcc-------hHHHHHHHHHHHhhhcccccCCEEEE
Confidence 21111 1111100 0000 0000000000 00011223455689999999999999
Q ss_pred HHccCCCEEEEeCCCC------------CCCHHHHHHHHHHHhh
Q 048654 334 ALFVQPTLLLLDEPTN------------HLDLRAVLWLEEYLCR 365 (723)
Q Consensus 334 AL~~~P~lLLLDEPT~------------~LD~~~~~~L~~~L~~ 365 (723)
|+..+|++| |||+. ..|...+..|++.+.+
T Consensus 151 a~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 151 AATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred eecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 999999986 99864 3467777777776643
No 269
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.69 E-value=3.9e-11 Score=125.58 Aligned_cols=132 Identities=16% Similarity=0.210 Sum_probs=79.5
Q ss_pred cceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce-----------eEEEEcccc---ccccCcc
Q 048654 511 FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL-----------RIGRYSQHF---VDLLTME 576 (723)
Q Consensus 511 ~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~-----------~ig~~~q~~---~~~~~~~ 576 (723)
.+|++++|.+.+| ++|+||||||||||+++|+|.+.+ |.|.+.+.. .+++++|.. ...+.+.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 3688999999999 999999999999999999999876 566665431 112222211 0000000
Q ss_pred ccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCC--------
Q 048654 577 ETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTN-------- 648 (723)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~-------- 648 (723)
+.. . .... .... . ..+.......+.+..|||||+||+.|++++.++|++| |||+.
T Consensus 110 Dei-d---~~~~------~r~~-~----~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~ 172 (274)
T 2x8a_A 110 DEV-D---ALCP------RRSD-R----ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKT 172 (274)
T ss_dssp ETC-T---TTCC--------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEE
T ss_pred ehh-h---hhhc------ccCC-C----cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeE
Confidence 000 0 0000 0000 0 0000011112345689999999999999999999985 99974
Q ss_pred ----CCCHHHHHHHHHHHH
Q 048654 649 ----HLDMQSIDALADALD 663 (723)
Q Consensus 649 ----~LD~~s~~~l~~~L~ 663 (723)
-.|...+..|++.+.
T Consensus 173 i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 173 LFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EECCSCCHHHHHHHHHHHT
T ss_pred EEeCCcCHHHHHHHHHHHH
Confidence 235667777766654
No 270
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.65 E-value=7.1e-08 Score=104.24 Aligned_cols=70 Identities=14% Similarity=0.152 Sum_probs=48.3
Q ss_pred HHHHHHHHHccC--CCEEEEeCCCCCC----------CH----HH---HHHHHH---HHhhcCcEEEEEeCCHH------
Q 048654 327 MRISLARALFVQ--PTLLLLDEPTNHL----------DL----RA---VLWLEE---YLCRWKKTLVVVSHDRD------ 378 (723)
Q Consensus 327 QRvaLArAL~~~--P~lLLLDEPT~~L----------D~----~~---~~~L~~---~L~~~~~TVIivsHdl~------ 378 (723)
+-+.++++++.+ |++||+|||++.+ |+ .. ...+.. ++++++.|||+++|-..
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 446678888755 9999999999998 33 11 122222 23566889999999653
Q ss_pred ----------HHHhhCCEEEEEeCCEEE
Q 048654 379 ----------FLNTVCTEIIHLHDQKLH 396 (723)
Q Consensus 379 ----------~l~~iad~Ii~L~~G~i~ 396 (723)
.+..+||.++.++.+++.
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEeeee
Confidence 266789999999876653
No 271
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.64 E-value=4.5e-10 Score=119.42 Aligned_cols=58 Identities=29% Similarity=0.236 Sum_probs=53.1
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEE-------------------ecCcEEEEEcCCCCcHHHHHHHHHcCCC--CCcce
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGI-------------------DMGTRVAIVGPNGAGKSTLLNLLAGDLS--PTEGE 553 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i-------------------~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~--p~~G~ 553 (723)
+|+++||++.|+ +++++|+|.+ .+|+++||+||||||||||+++|+|++. |++|+
T Consensus 37 ~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 37 DLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred ccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 578899999994 4789999988 8999999999999999999999999998 99999
Q ss_pred EEE
Q 048654 554 VRR 556 (723)
Q Consensus 554 I~~ 556 (723)
|.+
T Consensus 113 i~v 115 (308)
T 1sq5_A 113 VEL 115 (308)
T ss_dssp EEE
T ss_pred EEE
Confidence 976
No 272
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.64 E-value=6.1e-08 Score=108.49 Aligned_cols=178 Identities=11% Similarity=0.044 Sum_probs=103.7
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChHHHHHHHHhhHHHHHHHHHHH
Q 048654 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRSAIQAVVSAHEELVKLREEVA 257 (723)
Q Consensus 178 ~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 257 (723)
-+.|+++..-|.+|+++.|.|++|+|||||+..|++...+..+ ..+.|++.+... ......+. ....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E~s~--~~l~~r~~----------~~~~ 256 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLEMSA--QQLVMRML----------CAEG 256 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESSSCH--HHHHHHHH----------HHHH
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECCCCH--HHHHHHHH----------HHHc
Confidence 4578888888999999999999999999999999864322111 245565543211 11111000 0000
Q ss_pred hhhcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHHHHc-
Q 048654 258 SLQNSTSVDGEEDGDDANDAGEKLAELYEKLQILGSDAAEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLARALF- 336 (723)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLArAL~- 336 (723)
.+. . ..+ . ...+ ......++...+..++...... .....+|.++.+ +.++.++
T Consensus 257 ~~~-------------~----~~l---~--~g~l-~~~~~~~~~~a~~~l~~~~l~i-~d~~~~s~~~i~--~~~~~l~~ 310 (454)
T 2r6a_A 257 NIN-------------A----QNL---R--TGKL-TPEDWGKLTMAMGSLSNAGIYI-DDTPSIRVSDIR--AKCRRLKQ 310 (454)
T ss_dssp TCC-------------H----HHH---H--TSCC-CHHHHHHHHHHHHHHHSSCEEE-ECCTTCCHHHHH--HHHHHHHT
T ss_pred CCC-------------H----HHH---h--cCCC-CHHHHHHHHHHHHHHhcCCEEE-ECCCCCCHHHHH--HHHHHHHH
Confidence 000 0 000 0 0001 1111223444444443322222 234579999876 5666665
Q ss_pred -cCCCEEEEeCCCCCCCH--------HHHHHHHHHHh----hcCcEEEEEeC---------C--HH--------HHHhhC
Q 048654 337 -VQPTLLLLDEPTNHLDL--------RAVLWLEEYLC----RWKKTLVVVSH---------D--RD--------FLNTVC 384 (723)
Q Consensus 337 -~~P~lLLLDEPT~~LD~--------~~~~~L~~~L~----~~~~TVIivsH---------d--l~--------~l~~ia 384 (723)
.+|+++|+|+++...+. ..+..+.+.|+ +++.+||+++| + +. .+...|
T Consensus 311 ~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~a 390 (454)
T 2r6a_A 311 ESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDA 390 (454)
T ss_dssp TTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHC
T ss_pred HcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhC
Confidence 68999999999998843 22344444443 45789999999 3 22 577889
Q ss_pred CEEEEEeCCE
Q 048654 385 TEIIHLHDQK 394 (723)
Q Consensus 385 d~Ii~L~~G~ 394 (723)
|.|++|+.+.
T Consensus 391 D~vi~l~r~~ 400 (454)
T 2r6a_A 391 DIVAFLYRDD 400 (454)
T ss_dssp SEEEEEEETT
T ss_pred CEEEEEeccc
Confidence 9999998665
No 273
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.64 E-value=6.2e-09 Score=124.48 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=29.5
Q ss_pred eEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 516 VDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 516 isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
.++.+.++..+.|+||||+|||||.++|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 466778999999999999999999999998764
No 274
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.60 E-value=2.8e-08 Score=111.23 Aligned_cols=168 Identities=13% Similarity=0.132 Sum_probs=99.5
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHH-------
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLL------- 584 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~------- 584 (723)
.|+++...+.+|+++.|.|++|+|||||+..|++...+..|. .+.|+.-... .. .....+.
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~-------~Vl~~s~E~s----~~-~l~~r~~~~~~~~~ 259 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNE-------NVAIFSLEMS----AQ-QLVMRMLCAEGNIN 259 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSC-------CEEEEESSSC----HH-HHHHHHHHHHHTCC
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCC-------cEEEEECCCC----HH-HHHHHHHHHHcCCC
Confidence 577787789999999999999999999999999876554341 2334332210 00 0000000
Q ss_pred --hhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHc--cCCCeEEeccCCCCCCH--------
Q 048654 585 --RLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISM--SKPHILLLDEPTNHLDM-------- 652 (723)
Q Consensus 585 --~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~--~~p~lLlLDEPT~~LD~-------- 652 (723)
..............+...+..++........ ...+|.++.+ ..++.++ .+|+++|+|+++...+.
T Consensus 260 ~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~ 336 (454)
T 2r6a_A 260 AQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQ 336 (454)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHH
Confidence 0000000001222344444444432222222 3579999987 4555555 68999999999998742
Q ss_pred HHHHHHHHHHH----HcCceEEEEec---------C--HH--------HHHHhcCcCCCcEEEEEECCeE
Q 048654 653 QSIDALADALD----EFTGGVVLVSH---------D--SR--------LISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 653 ~s~~~l~~~L~----~~~~tVIivSH---------D--~~--------~~~~~~d~~~~drv~vl~~G~i 699 (723)
.....+.+.|+ +++.+||+++| | +. .+...|| .|++|..+..
T Consensus 337 ~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD-----~vi~l~r~~~ 401 (454)
T 2r6a_A 337 QEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDAD-----IVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCS-----EEEEEEETTC
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCC-----EEEEEecccc
Confidence 23345555554 44678999999 3 22 4677774 8999986543
No 275
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.58 E-value=1.8e-08 Score=112.95 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=55.0
Q ss_pred CCCCCCHHHHHHHHHHHHH--cc---------------CCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEecCHHH
Q 048654 616 PIAKLSGGQKARVVFTSIS--MS---------------KPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRL 678 (723)
Q Consensus 616 ~i~~LSGGqkqRv~lAral--~~---------------~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSHD~~~ 678 (723)
..+.+||||+|-..+|.+. ++ .-.+++|||. +-+|.+.....++++++++--+|++|=+ .
T Consensus 376 ~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~--~ 452 (483)
T 3euj_A 376 ESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE--N 452 (483)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS--S
T ss_pred ccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc--h
Confidence 3579999999975444433 22 1257999999 9999999999999999999889999988 4
Q ss_pred HHHhcCcCCCcEEEEEE
Q 048654 679 ISRVCDDEERSEIWVVE 695 (723)
Q Consensus 679 ~~~~~d~~~~drv~vl~ 695 (723)
+..++ +.++.+-
T Consensus 453 i~p~v-----~~~~~~~ 464 (483)
T 3euj_A 453 ISPER-----GTTYKLV 464 (483)
T ss_dssp CCCSS-----SEEEECC
T ss_pred hhhcc-----CceEEEE
Confidence 44444 4666553
No 276
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.58 E-value=1.3e-08 Score=103.09 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=22.9
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHH-cCCC
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLA-GDLS 548 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~-Gl~~ 548 (723)
...++||++.+|++++|+||||||||||+++|+ |+++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 467899999999999999999999999999999 9984
No 277
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.56 E-value=3.4e-09 Score=112.24 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=30.1
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
++..|++++|+||||||||||||+|+|+.+|+.|+|..
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 45579999999999999999999999999999999987
No 278
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.53 E-value=3.8e-08 Score=96.46 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=33.1
Q ss_pred HHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHH
Q 048654 626 ARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE 664 (723)
Q Consensus 626 qRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~ 664 (723)
+.+.+|++++.+|.++++| |+++|..++..+++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3477899999999999999 999999999999988865
No 279
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.52 E-value=1.1e-09 Score=117.93 Aligned_cols=65 Identities=18% Similarity=0.190 Sum_probs=53.8
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeee
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEV 231 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~ 231 (723)
+|+++++++.|++..+|+++||++.+|++++|+|+||||||||+++|+|+..+.. ++|.+++.++
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~--g~v~i~~~d~ 93 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAG--HKVAVLAVDP 93 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCC--CEEEEEEEcC
Confidence 4677888888887889999999999999999999999999999999998765443 4455555443
No 280
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.52 E-value=7.8e-09 Score=119.91 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=96.1
Q ss_pred EEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCc-ceEEECCc------eeEEEEccccccccC
Q 048654 502 SFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTE-GEVRRSQK------LRIGRYSQHFVDLLT 574 (723)
Q Consensus 502 s~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~-G~I~~~~~------~~ig~~~q~~~~~~~ 574 (723)
+.-|+. ..+++++++.+..|+.++|+||||+|||||+++|++++++.. |.+.+.+. ..++++++.....+.
T Consensus 41 ~~i~G~--~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~ 118 (604)
T 3k1j_A 41 DQVIGQ--EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIV 118 (604)
T ss_dssp HHCCSC--HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHHHH
T ss_pred ceEECc--hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHHHH
Confidence 334554 347899999999999999999999999999999999999887 66655332 235665543210000
Q ss_pred ccccHHHHHH---------------hh-------CCCCCCC----cHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHH
Q 048654 575 MEETPVSYLL---------------RL-------HPDQEGL----SKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARV 628 (723)
Q Consensus 575 ~~~~~~~~~~---------------~~-------~~~~~~~----~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv 628 (723)
+....... .. .....+. ........++..+... . ...+.+|+|++|++
T Consensus 119 --e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~---~-~~~g~~~~g~~~~i 192 (604)
T 3k1j_A 119 --EKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHD---P-FQSGGLGTPAHERV 192 (604)
T ss_dssp --HHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCC---C-C----CCCCGGGGE
T ss_pred --HHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEec---h-hhcCCccccccccc
Confidence 00000000 00 0000000 0000122233222221 1 12257999999999
Q ss_pred HHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHH
Q 048654 629 VFTSISMSKPHILLLDEPTNHLDMQSIDALADALDE 664 (723)
Q Consensus 629 ~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~ 664 (723)
..++....++.+|+|||... |++..+..|.++|.+
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 899999999999985
No 281
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.51 E-value=8.8e-11 Score=126.27 Aligned_cols=180 Identities=16% Similarity=0.176 Sum_probs=94.2
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCC-------cEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCChH
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHG-------KRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDRS 237 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~G-------e~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~~ 237 (723)
.++.++++..|++..+++++++.|.+| ++++|+||||+|||||+++|+|.... .+......+... ..
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~-----~~~~~sg~~~~~-~~ 91 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT-----NIHVTSGPVLVK-QG 91 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTC-----CEEEEETTTCCS-HH
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEechHhcC-HH
Confidence 355667777788888999999999887 89999999999999999999986421 111111111111 11
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhcCcC-CCCCCCCCchhhHHHHHHHHHHHHHhcC------chHHHHHHHHHHHhCCCC
Q 048654 238 AIQAVVSAHEELVKLREEVASLQNSTS-VDGEEDGDDANDAGEKLAELYEKLQILG------SDAAEAQASKILAGLGFT 310 (723)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~L~~lgl~ 310 (723)
.+. .+... +..... ...+...... ...+.+ +..+.... .......+...+..++|.
T Consensus 92 ~l~----------~~~~~---~~~~~v~~iDE~~~l~~-~~~e~L---~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 92 DMA----------AILTS---LERGDVLFIDEIHRLNK-AVEELL---YSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp HHH----------HHHHH---CCTTCEEEEETGGGCCH-HHHHHH---HHHHHTSCCCC---------------CCCEEE
T ss_pred HHH----------HHHHH---ccCCCEEEEcchhhcCH-HHHHHH---HHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 110 01110 100000 0000000000 111111 11111111 111223344555666663
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCE
Q 048654 311 KEMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTE 386 (723)
Q Consensus 311 ~~~~~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~ 386 (723)
. ....+..||+|++||+.++ .+||+.+...+.++|++... ..-++|+.+.+..+|++
T Consensus 155 ~--at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~-~~~~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 155 G--ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAAS-LMDVEIEDAAAEMIAKR 211 (334)
T ss_dssp E--EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHH-HTTCCBCHHHHHHHHHT
T ss_pred E--ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHH-HcCCCcCHHHHHHHHHh
Confidence 2 3466789999999998655 77888777777777765311 01146888888877754
No 282
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.51 E-value=6.8e-09 Score=107.02 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=35.7
Q ss_pred cceEEEeE-EEEe-CCeeeeEeeeEEEeC---CcEEEEECCCCccHHHHHHHHHhC
Q 048654 164 KDITIDNF-SVAA-RGKELLKSTSVRISH---GKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 164 ~~I~l~nl-s~~y-~~~~vL~~isl~i~~---Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++|+++|+ +++| ++.++|+|+||+|.+ |++++|+|++||||||++++|++.
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999 9999 778999999999999 999999999999999999999974
No 283
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.48 E-value=1.1e-09 Score=119.98 Aligned_cols=73 Identities=15% Similarity=0.117 Sum_probs=58.6
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCC--CEEEEeCCCCCCCHHHHHHHHHHHhhc----CcEEEEEeCCHHHHHhhCCEEE
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQP--TLLLLDEPTNHLDLRAVLWLEEYLCRW----KKTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P--~lLLLDEPT~~LD~~~~~~L~~~L~~~----~~TVIivsHdl~~l~~iad~Ii 388 (723)
+..+..+||+. +| +++++|||++.+|+..+...++.+... +.||+ +|.+..+..+|++|+
T Consensus 128 d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~ 193 (392)
T 1ni3_A 128 DAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVY 193 (392)
T ss_dssp TTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHH
T ss_pred cceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHH
Confidence 34555677763 99 999999999999999998888888765 34543 999999999999999
Q ss_pred -EEeCC-EEEEecCCh
Q 048654 389 -HLHDQ-KLHFYRGNF 402 (723)
Q Consensus 389 -~L~~G-~i~~~~g~~ 402 (723)
+|++| +++ +.|.+
T Consensus 194 ~~L~~G~~~~-~~~~~ 208 (392)
T 1ni3_A 194 QYLTETKQPI-RKGDW 208 (392)
T ss_dssp HHHHTTCSCG-GGSCC
T ss_pred HHhccCCcee-ecCCC
Confidence 99999 774 33544
No 284
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.47 E-value=2.8e-09 Score=113.29 Aligned_cols=60 Identities=20% Similarity=0.188 Sum_probs=49.4
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEE-------------------eCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEE
Q 048654 165 DITIDNFSVAARGKELLKSTSVRI-------------------SHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVL 225 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i-------------------~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~ 225 (723)
.|+++||++.| .+++++++|.+ .+|+++||+||||||||||+++|+|+....|..|.|.
T Consensus 37 ~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 48889999999 47999999988 8999999999999999999999999755113344444
Q ss_pred E
Q 048654 226 L 226 (723)
Q Consensus 226 ~ 226 (723)
+
T Consensus 115 v 115 (308)
T 1sq5_A 115 L 115 (308)
T ss_dssp E
T ss_pred E
Confidence 4
No 285
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.45 E-value=5.8e-08 Score=98.30 Aligned_cols=38 Identities=29% Similarity=0.267 Sum_probs=22.9
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHH-hCC
Q 048654 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA-WRK 215 (723)
Q Consensus 178 ~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~-G~~ 215 (723)
.+...++||++++|++++|+||||||||||+++|+ |+.
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35688999999999999999999999999999999 985
No 286
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.42 E-value=5.5e-09 Score=106.12 Aligned_cols=54 Identities=26% Similarity=0.280 Sum_probs=42.3
Q ss_pred eEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 495 LLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
.|+++|+...|+ -+|+|.+ ++++|+|||||||||||++|+|++.|++|.|.+++
T Consensus 9 ~l~l~~~~~~~~---------~~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g 62 (227)
T 1qhl_A 9 SLTLINWNGFFA---------RTFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRN 62 (227)
T ss_dssp EEEEEEETTEEE---------EEECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC----
T ss_pred EEEEEeeecccC---------CEEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECC
Confidence 578888865442 1566666 89999999999999999999999999999987654
No 287
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.40 E-value=7.3e-09 Score=116.82 Aligned_cols=154 Identities=12% Similarity=0.092 Sum_probs=87.2
Q ss_pred ceEEEEecCcEEEEEcCCCCcHHHHHHHHHc--CCCCCcceEEE---CCceeEEEEccccc--ccc--CccccHHHH--H
Q 048654 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG--DLSPTEGEVRR---SQKLRIGRYSQHFV--DLL--TMEETPVSY--L 583 (723)
Q Consensus 515 ~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~G--l~~p~~G~I~~---~~~~~ig~~~q~~~--~~~--~~~~~~~~~--~ 583 (723)
.+++++..+..+.|+|.+||||||++++|.. +..++.|.+.+ +.+. .-++.+. .++ .+..++... .
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~---~el~~~~~lPhl~~~Vvtd~~~a~~~ 235 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM---LELSVYEGIPHLLTEVVTDMKDAANA 235 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS---SGGGGGTTCTTBSSSCBCSHHHHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch---hhhhhhccCCcccceeecCHHHHHHH
Confidence 4788889999999999999999999999876 45555566543 2111 0011110 111 122222111 1
Q ss_pred HhhCCCCCCCcHHHHHHHHHHhCCCCCCCCc--CCCCCCCHHHHHHH----------HHHHHHccCCC-eEEeccCCCCC
Q 048654 584 LRLHPDQEGLSKQEAVRAKLGKFGLPSHNHL--TPIAKLSGGQKARV----------VFTSISMSKPH-ILLLDEPTNHL 650 (723)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~--~~i~~LSGGqkqRv----------~lAral~~~p~-lLlLDEPT~~L 650 (723)
+..... ...++ .++|..+|+.+.... +....+|+||+|+. .+++++...|. ++|+||++..+
T Consensus 236 L~~~~~----EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll 310 (512)
T 2ius_A 236 LRWCVN----EMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLM 310 (512)
T ss_dssp HHHHHH----HHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHH
T ss_pred HHHHHH----HHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHH
Confidence 110000 01122 256777887542211 11135788887753 35566777898 89999999988
Q ss_pred CHHHHHHHHHHHH---Hc----CceEEEEecCHH
Q 048654 651 DMQSIDALADALD---EF----TGGVVLVSHDSR 677 (723)
Q Consensus 651 D~~s~~~l~~~L~---~~----~~tVIivSHD~~ 677 (723)
+... ..+.+.|. +. +.++|++||+..
T Consensus 311 ~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 311 MTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8432 22333332 22 347999999987
No 288
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.39 E-value=8.7e-06 Score=102.84 Aligned_cols=30 Identities=33% Similarity=0.495 Sum_probs=26.7
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSP 549 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p 549 (723)
|.+|+++.|.||+|+|||||+..++.....
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~ 758 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHH
Confidence 899999999999999999999998875543
No 289
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.38 E-value=2.8e-08 Score=102.43 Aligned_cols=54 Identities=24% Similarity=0.342 Sum_probs=35.6
Q ss_pred CCeEEEEEE-EEEcCCCcccceeceEEEEec---CcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 493 PPLLQLIEV-SFSYPNREDFKLSDVDVGIDM---GTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 493 ~~~l~~~~l-s~~y~~~~~~~L~~isl~i~~---Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.++|+++|+ ++.|++ ...+|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 15 ~~~l~~~~~~~~~~~~-~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 15 SALLETGSLLHSPFDE-EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEcceeeEEecC-cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999 999932 24689999999999 9999999999999999999999854
No 290
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.36 E-value=1.3e-07 Score=93.30 Aligned_cols=32 Identities=28% Similarity=0.487 Sum_probs=26.8
Q ss_pred EEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 517 DVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 517 sl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
||++.+|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57788999999999999999999999999974
No 291
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.36 E-value=1.7e-09 Score=117.87 Aligned_cols=131 Identities=18% Similarity=0.107 Sum_probs=77.8
Q ss_pred cceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE-CC---c--eeEEEEccccc---cccCccccHHH
Q 048654 511 FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR-SQ---K--LRIGRYSQHFV---DLLTMEETPVS 581 (723)
Q Consensus 511 ~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~-~~---~--~~ig~~~q~~~---~~~~~~~~~~~ 581 (723)
.+|+++++.+.+|++++|+||||||||||+++|+|. ..|.+.. .. . ..+++++|.+. +.+.....
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~--- 230 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGG--- 230 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTT---
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHH---
Confidence 478999999999999999999999999999999985 3677664 21 1 12344444331 11110000
Q ss_pred HHHhhCCCCCCCcHHHHHHHHHHh---------------CCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEE-ecc
Q 048654 582 YLLRLHPDQEGLSKQEAVRAKLGK---------------FGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILL-LDE 645 (723)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~L~~---------------~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLl-LDE 645 (723)
..+......+......+...+.. .-+........+..+++|.++|+..+.+++..|++++ ||+
T Consensus 231 -~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd~ 309 (377)
T 1svm_A 231 -ESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLER 309 (377)
T ss_dssp -TTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHT
T ss_pred -HHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEeC
Confidence 00000000000000122333320 1111111123456789999999999888889999888 999
Q ss_pred CCC
Q 048654 646 PTN 648 (723)
Q Consensus 646 PT~ 648 (723)
|+.
T Consensus 310 ~~~ 312 (377)
T 1svm_A 310 SEF 312 (377)
T ss_dssp CTH
T ss_pred CHH
Confidence 987
No 292
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.36 E-value=7.4e-07 Score=96.26 Aligned_cols=138 Identities=16% Similarity=0.240 Sum_probs=78.0
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHH
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEA 598 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (723)
-|.+|+++.|.||||||||||+..++.......|.+ .|+.-.. .. ... +
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~v--------lyi~~E~----~~--~~~-~---------------- 105 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIA--------AFIDAEH----AL--DPE-Y---------------- 105 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE--------EEEESSC----CC--CHH-H----------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeE--------EEEECCC----Cc--CHH-H----------------
Confidence 478999999999999999999888876543333332 3333211 00 000 0
Q ss_pred HHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccC--CCeEEeccCCCCC----------CH----HH---HHH--
Q 048654 599 VRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSK--PHILLLDEPTNHL----------DM----QS---IDA-- 657 (723)
Q Consensus 599 ~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~--p~lLlLDEPT~~L----------D~----~s---~~~-- 657 (723)
...+|+..... ......+.. +-+.++++++.. |++||+|||++.+ |. .. ...
T Consensus 106 ----a~~lG~~~~~l-~i~~~~~~e--~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~ 178 (349)
T 2zr9_A 106 ----AKKLGVDTDSL-LVSQPDTGE--QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178 (349)
T ss_dssp ----HHHTTCCGGGC-EEECCSSHH--HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHH
T ss_pred ----HHHcCCCHHHe-EEecCCCHH--HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHH
Confidence 11223221100 000112332 345677777654 9999999999998 32 11 112
Q ss_pred -HHHHHHHcCceEEEEecCHH----------------HHHHhcCcCCCcEEEEEECCeE
Q 048654 658 -LADALDEFTGGVVLVSHDSR----------------LISRVCDDEERSEIWVVENGTV 699 (723)
Q Consensus 658 -l~~~L~~~~~tVIivSHD~~----------------~~~~~~d~~~~drv~vl~~G~i 699 (723)
|...+++++.+||+++|-.. .+..+|| .++.++.+++
T Consensus 179 ~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad-----~~l~lrr~~~ 232 (349)
T 2zr9_A 179 KMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYAS-----VRLDVRRIET 232 (349)
T ss_dssp HHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCS-----EEEEEEEEEE
T ss_pred HHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccc-----eEEEEEEeee
Confidence 22223566789999999653 2566775 6667766554
No 293
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.32 E-value=2.3e-07 Score=91.45 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=25.9
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 185 SVRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 185 sl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
|+++.+|++++|+||||||||||+++|+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 5788899999999999999999999999974
No 294
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.32 E-value=4.8e-07 Score=87.68 Aligned_cols=39 Identities=31% Similarity=0.370 Sum_probs=35.6
Q ss_pred eceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcce
Q 048654 514 SDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553 (723)
Q Consensus 514 ~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~ 553 (723)
++++|.+.+| +++|+||||||||||+++|.+++.+..|.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~ 56 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAK 56 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccc
Confidence 6899999999 99999999999999999999998877664
No 295
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.31 E-value=3.3e-07 Score=90.75 Aligned_cols=69 Identities=16% Similarity=0.049 Sum_probs=46.8
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-CcEEEEEeCCHHHH--HhhCCEEEEEe
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW-KKTLVVVSHDRDFL--NTVCTEIIHLH 391 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~-~~TVIivsHdl~~l--~~iad~Ii~L~ 391 (723)
.+.|+.+|..+++.++.+|..+.++ ++.++|.....+.+.+... +.+||+.+|.+.+. ...||.+++|+
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678999999999999988754433 3456677777777766654 45888888987665 67799999886
No 296
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.27 E-value=8e-07 Score=96.18 Aligned_cols=120 Identities=17% Similarity=0.222 Sum_probs=75.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEEC-CceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHH
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS-QKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAK 602 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~-~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (723)
-.++|+|+||+|||||++.|+|... ..|..... ....++.+.+... .
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~-------------------------------~ 215 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAKP-EIASYPFTTRGINVGQFEDGYF-------------------------------R 215 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSCC-EEECCTTCSSCEEEEEEEETTE-------------------------------E
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCeeeceeEEEEEecCc-------------------------------e
Confidence 3789999999999999999998652 11111000 0011122111100 0
Q ss_pred HHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEec-cCCCCCCHHHHHHHHHHHHHc--CceEEEEe--cCHH
Q 048654 603 LGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLD-EPTNHLDMQSIDALADALDEF--TGGVVLVS--HDSR 677 (723)
Q Consensus 603 L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLD-EPT~~LD~~s~~~l~~~L~~~--~~tVIivS--HD~~ 677 (723)
+..++..+... .++..+|+|++|++. +.+...++-|+++| +|+.++|......+...+... +..+|+|. ||+.
T Consensus 216 ~~l~Dt~G~~~-~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 216 YQIIDTPGLLD-RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp EEEEECTTTSS-SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred EEEEeCCCccc-cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 01111122222 345689999998776 55555677789999 999999999887777777653 45788888 8874
No 297
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.27 E-value=3.6e-07 Score=89.83 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=31.0
Q ss_pred HHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHc
Q 048654 628 VVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEF 665 (723)
Q Consensus 628 v~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~ 665 (723)
...|++++.+|.++++| |+++|...+..+++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45688999999999999 9999999999888877653
No 298
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.26 E-value=6.8e-07 Score=86.56 Aligned_cols=48 Identities=25% Similarity=0.343 Sum_probs=37.1
Q ss_pred EEEeEEEEeCCeeee--EeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCC
Q 048654 167 TIDNFSVAARGKELL--KSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP 217 (723)
Q Consensus 167 ~l~nls~~y~~~~vL--~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~ 217 (723)
.|..|.+. +...+ ++++|.+.+| +++|+||||||||||+++|.++..+
T Consensus 3 ~i~~l~i~--nf~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 3 YIEKLELK--GFKSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEEEE--SBGGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEEEe--CeEeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 34444443 23356 7889999999 9999999999999999999976443
No 299
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.26 E-value=8.8e-07 Score=105.39 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=56.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCC-CCCHHHHHHHHHHHHHcC---ceEEE-EecCHHHHHHhcC
Q 048654 615 TPIAKLSGGQKARVVFTSISMSKPHILLLDEPTN-HLDMQSIDALADALDEFT---GGVVL-VSHDSRLISRVCD 684 (723)
Q Consensus 615 ~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~-~LD~~s~~~l~~~L~~~~---~tVIi-vSHD~~~~~~~~d 684 (723)
..+.-+|.|+.+|..+++.++.++.+||+|||.. +||......++..|.... ..|++ .|||.+.+..+++
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 3456789999999999999999999999999996 999877666666555442 35666 4999888888875
No 300
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.23 E-value=5.7e-07 Score=107.01 Aligned_cols=73 Identities=14% Similarity=0.202 Sum_probs=57.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCC-CCCHHHHHHHHHHHhhc---CcEEEE-EeCCHHHHHhhCCEE
Q 048654 315 GRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTN-HLDLRAVLWLEEYLCRW---KKTLVV-VSHDRDFLNTVCTEI 387 (723)
Q Consensus 315 ~~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~-~LD~~~~~~L~~~L~~~---~~TVIi-vsHdl~~l~~iad~I 387 (723)
+..+.-+|+|+.+|..++++++.++++||||||.. +||......+...+... ..+|++ .||+.+.+..+++..
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence 34566789999999999999999999999999997 99987765555545433 246666 499988888777643
No 301
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.23 E-value=8.9e-07 Score=99.34 Aligned_cols=112 Identities=21% Similarity=0.306 Sum_probs=72.2
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCC
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQE 591 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 591 (723)
.+.++++.+..| +.|+||+|+|||||+++|++.... .+-++. ..+ +...
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~-----------~f~~is--------~~~---------~~~~- 88 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV-----------PFFHIS--------GSD---------FVEL- 88 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC-----------CEEEEE--------GGG---------TTTC-
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC-----------CeeeCC--------HHH---------HHHH-
Confidence 466677777777 889999999999999999984310 010110 000 0000
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccC----------CCCCCHHHHHHHHHH
Q 048654 592 GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEP----------TNHLDMQSIDALADA 661 (723)
Q Consensus 592 ~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEP----------T~~LD~~s~~~l~~~ 661 (723)
.+ =.|++++|..|++|....|.||++||+ +.+.|......+.++
T Consensus 89 ------------------------~~--g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~L 142 (476)
T 2ce7_A 89 ------------------------FV--GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQL 142 (476)
T ss_dssp ------------------------CT--THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHH
T ss_pred ------------------------Hh--cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHH
Confidence 00 026788999999999999999999999 346676665556666
Q ss_pred HHHc---C----ceEEEEecCHHHHH
Q 048654 662 LDEF---T----GGVVLVSHDSRLIS 680 (723)
Q Consensus 662 L~~~---~----~tVIivSHD~~~~~ 680 (723)
|..+ . ..||.+||+.+.+.
T Consensus 143 L~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 143 LVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred HHHHhccCCCCCEEEEEecCChhhhc
Confidence 5543 2 35888999986553
No 302
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.22 E-value=2.8e-07 Score=91.25 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=33.5
Q ss_pred HHH-HHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEEEec
Q 048654 630 FTS-ISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSH 674 (723)
Q Consensus 630 lAr-al~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIivSH 674 (723)
.++ +++.+|.+++|||||+++|..+...|.+.|...... +.++|
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~ 160 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSK 160 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGG
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhh
Confidence 455 678899999999999999998888888877665322 23455
No 303
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.20 E-value=2.1e-07 Score=107.81 Aligned_cols=175 Identities=15% Similarity=0.079 Sum_probs=92.0
Q ss_pred eEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeeecCCCh-------HHHHHH
Q 048654 170 NFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDR-------SAIQAV 242 (723)
Q Consensus 170 nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~~~~~~-------~~~~~~ 242 (723)
+++.-||...+++++++.+..|+.++|+||||+|||||+++|++...+. ..+.+.+.+........ .....+
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~ 117 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDENMPRIKTVPACQGRRI 117 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCTTSCEEEEEETTHHHHH
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccccCCcEEEEecchHHHH
Confidence 4444578888999999999999999999999999999999999976432 22344333222111000 000001
Q ss_pred HHhhHHHHHHH---HHHHhh-hcCcCCCCCCCCCchhhHHHHHHHHHHHHHhcCc---hHHHHHHHHHHHhCCCCccccC
Q 048654 243 VSAHEELVKLR---EEVASL-QNSTSVDGEEDGDDANDAGEKLAELYEKLQILGS---DAAEAQASKILAGLGFTKEMQG 315 (723)
Q Consensus 243 ~~~~~~~~~l~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~L~~lgl~~~~~~ 315 (723)
+.......... .....+ ....... +..+. .....+. .........++..+... .
T Consensus 118 ~e~~~~~~~~~~~~r~~~~~~~~~~~~~-------nl~v~--------~~~~~~~~~v~~~~~~~~~L~G~~~~~----~ 178 (604)
T 3k1j_A 118 VEKYREKAKSQESVKSSNMRLKSTVLVP-------KLLVD--------NCGRTKAPFIDATGAHAGALLGDVRHD----P 178 (604)
T ss_dssp HHHHHHHHHHHTCC-----------CCC-------EEEEC--------CTTCSSCCEEECTTCCHHHHHCEECCC----C
T ss_pred HHHHHHhhccchhhhhhccccccccccc-------ceeec--------cccCCCCCEEEcCCCCHHhcCceEEec----h
Confidence 00000000000 000000 0000000 00000 0000000 00000111122111111 1
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR 365 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~ 365 (723)
.....+|+|++|++...+....++.+|+|||... |++.....|.+.|.+
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 2235699999999999999999999999999988 899999999999974
No 304
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.19 E-value=4.2e-07 Score=88.85 Aligned_cols=28 Identities=39% Similarity=0.656 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDLSPT 550 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~ 550 (723)
|++++|+||||||||||+++|+|++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~ 28 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc
Confidence 6789999999999999999999999843
No 305
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.18 E-value=7.3e-07 Score=100.00 Aligned_cols=59 Identities=20% Similarity=0.225 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHccCCCEEEEeCCC----------CCCCHHHHHHHHHHHhhc-------CcEEEEEeCCHHHHH
Q 048654 323 GGWRMRISLARALFVQPTLLLLDEPT----------NHLDLRAVLWLEEYLCRW-------KKTLVVVSHDRDFLN 381 (723)
Q Consensus 323 GGqrQRvaLArAL~~~P~lLLLDEPT----------~~LD~~~~~~L~~~L~~~-------~~TVIivsHdl~~l~ 381 (723)
|++++|..+++|....|.||+|||+. ++.|......+..+|..+ +..||.+||+++.+.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 67889999999999999999999994 456665555444444322 358899999987654
No 306
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.18 E-value=9.6e-07 Score=87.38 Aligned_cols=126 Identities=19% Similarity=0.179 Sum_probs=74.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHHHHHH
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLG 604 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 604 (723)
+++|+|+|||||||+.++|+++ |...++.. ... ...... + ...+..+..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d------------------~~~---~~~~~~--~---~~~~~~i~~ 52 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDAD------------------VVA---REVVAK--D---SPLLSKIVE 52 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHH------------------HHH---HHTTCS--S---CHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchH------------------HHH---HHHccC--C---hHHHHHHHH
Confidence 6899999999999999999983 32221110 000 000000 0 123445566
Q ss_pred hCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC-ceEEEEecCHHHH--HH
Q 048654 605 KFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFT-GGVVLVSHDSRLI--SR 681 (723)
Q Consensus 605 ~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~-~tVIivSHD~~~~--~~ 681 (723)
.||... -.+.|+.+|..++..+..+|..+.+. ++.++|.....+.+.+.... .+||+.+|.+... ..
T Consensus 53 ~~g~~~--------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~ 122 (206)
T 1jjv_A 53 HFGAQI--------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTA 122 (206)
T ss_dssp HHCTTC--------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGG
T ss_pred HhCHHH--------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHh
Confidence 667431 14678999999999988888754433 34566776777777676543 4688888987655 45
Q ss_pred hcCcCCCcEEEEEEC
Q 048654 682 VCDDEERSEIWVVEN 696 (723)
Q Consensus 682 ~~d~~~~drv~vl~~ 696 (723)
.| |.+++++-
T Consensus 123 ~~-----d~vi~l~~ 132 (206)
T 1jjv_A 123 LC-----DRILVVDV 132 (206)
T ss_dssp GC-----SEEEEEEC
T ss_pred hC-----CEEEEEEC
Confidence 56 48888853
No 307
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.16 E-value=8.8e-07 Score=96.19 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=76.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----------CCcceEEECCceeEEEEcc-ccccccCccccHHHH---HHhhC--
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLS-----------PTEGEVRRSQKLRIGRYSQ-HFVDLLTMEETPVSY---LLRLH-- 587 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~-----------p~~G~I~~~~~~~ig~~~q-~~~~~~~~~~~~~~~---~~~~~-- 587 (723)
+++|+|+||||||||++.|+|... |+.|.|.+.+. .+-.+.- .+...++ ...++. .+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~-~v~l~DT~G~i~~lp--~~lve~f~~tl~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR-KIMLVDTVGFIRGIP--PQIVDAFFVTLSEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE-EEEEEECCCBCSSCC--GGGHHHHHHHHHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE-EEEEEeCCCchhcCC--HHHHHHHHHHHHHHHh
Confidence 399999999999999999999875 55677777653 2211110 0000000 000110 00000
Q ss_pred C-------CCCCCc--HH---HHHHHHHHhCCCCCCC---CcCCCCCCCHHHHHHHHHH----HHH-ccCCCeEEeccCC
Q 048654 588 P-------DQEGLS--KQ---EAVRAKLGKFGLPSHN---HLTPIAKLSGGQKARVVFT----SIS-MSKPHILLLDEPT 647 (723)
Q Consensus 588 ~-------~~~~~~--~~---~~~~~~L~~~gl~~~~---~~~~i~~LSGGqkqRv~lA----ral-~~~p~lLlLDEPT 647 (723)
. +..... .. ..+..+|..+++.... ...++..+|+|+++++.++ +.+ ..+|++ +||
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~ 333 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPI 333 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EEC
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEE
Confidence 0 000111 11 1245667777764321 0234567898988888877 555 434444 899
Q ss_pred CCCCHHHHHHHHHHHHHc
Q 048654 648 NHLDMQSIDALADALDEF 665 (723)
Q Consensus 648 ~~LD~~s~~~l~~~L~~~ 665 (723)
|++|......|.+.|.+.
T Consensus 334 SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQL 351 (364)
T ss_dssp BTTTTBSHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHH
Confidence 999999999999888764
No 308
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.13 E-value=1.1e-06 Score=86.55 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=29.9
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc
Q 048654 518 VGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552 (723)
Q Consensus 518 l~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G 552 (723)
++|.+|++++|+||||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 36789999999999999999999999999977655
No 309
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.13 E-value=7e-08 Score=97.92 Aligned_cols=55 Identities=22% Similarity=0.207 Sum_probs=39.3
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeee
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQ 229 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q 229 (723)
.|+++|+...|+. +|+|.+ ++++|+|||||||||||++|+|+..|..|. |.+.+.
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~--i~~~g~ 63 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTL--LHFRNT 63 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTT--C-----
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCe--EEECCE
Confidence 4788888765532 566666 899999999999999999999987665554 444443
No 310
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.09 E-value=5.3e-08 Score=95.41 Aligned_cols=36 Identities=22% Similarity=0.131 Sum_probs=32.5
Q ss_pred HHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 048654 328 RISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR 365 (723)
Q Consensus 328 RvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~ 365 (723)
.+.+|++|+.+|.++++| ||+||..++..+++.|.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999999888754
No 311
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.09 E-value=5.7e-06 Score=89.51 Aligned_cols=41 Identities=29% Similarity=0.421 Sum_probs=32.6
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHc--CCCCCcceEE
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG--DLSPTEGEVR 555 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~G--l~~p~~G~I~ 555 (723)
+|+++++++. .|+|+|++|||||||++.|+| ++++..|.+.
T Consensus 26 ~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 26 ALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred ccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 6888998888 899999999999999999999 6677777664
No 312
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.09 E-value=4.2e-07 Score=89.88 Aligned_cols=53 Identities=21% Similarity=0.112 Sum_probs=39.8
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcE
Q 048654 169 DNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNI 222 (723)
Q Consensus 169 ~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~ 222 (723)
+|+++.++.....+.+++..++|++++|+||||||||||+++|++.+. .+|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 467888888888899999999999999999999999999999998643 33433
No 313
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.06 E-value=3.6e-07 Score=96.78 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=24.7
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
+.+|++++|+||||+|||||+|+|+|+..|..|.|..
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 4579999999999999999999999999999999986
No 314
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.05 E-value=1.2e-06 Score=86.56 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=41.3
Q ss_pred HHH-HHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHHHhhCCEEEEEeC
Q 048654 331 LAR-ALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHD 392 (723)
Q Consensus 331 LAr-AL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l~~iad~Ii~L~~ 392 (723)
.|+ +++.+|.+++|||||+++|..+...|.+.|.....- +.++| .. ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~--~~--~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSK--EP--GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGG--ST--TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhh--cc--CCceEEEECCC
Confidence 456 788899999999999999998888787777644211 24456 22 46899988763
No 315
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.05 E-value=6.5e-06 Score=88.29 Aligned_cols=54 Identities=7% Similarity=0.075 Sum_probs=40.2
Q ss_pred CCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHH-hhc-CcEEEEEeC
Q 048654 320 SFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYL-CRW-KKTLVVVSH 375 (723)
Q Consensus 320 ~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L-~~~-~~TVIivsH 375 (723)
.||.++.+|+..|...+.+++|+|.|+|... +.......+.+ ++. +..+|||.|
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 6999999999999999999999999998654 44444333333 344 567777753
No 316
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.04 E-value=2.8e-07 Score=91.11 Aligned_cols=53 Identities=23% Similarity=0.242 Sum_probs=39.2
Q ss_pred EEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceE
Q 048654 499 IEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554 (723)
Q Consensus 499 ~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I 554 (723)
+|++..++. ....+.+++..++|++++|+||||||||||+++|++.+. ..|.+
T Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 3 TNIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp -------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCce
Confidence 355665543 235677888889999999999999999999999999987 67876
No 317
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.04 E-value=3.8e-05 Score=82.78 Aligned_cols=126 Identities=16% Similarity=0.175 Sum_probs=75.2
Q ss_pred cCc--EEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHH
Q 048654 522 MGT--RVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAV 599 (723)
Q Consensus 522 ~Ge--~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (723)
.+. .+.|+||+|+|||||++.+++.+.+..+ ..+.++... .. .+ ....+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-------~~~~~i~~~--~~----~~----------------~~~~~ 91 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-------ARFVYINGF--IY----RN----------------FTAII 91 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-------CEEEEEETT--TC----CS----------------HHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-------eeEEEEeCc--cC----CC----------------HHHHH
Confidence 346 8999999999999999999998776431 111222110 00 01 11223
Q ss_pred HHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHH-ccCCCeEEeccCCCCCCHHHHHHHHHHHHHc------CceEEEE
Q 048654 600 RAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS-MSKPHILLLDEPTNHLDMQSIDALADALDEF------TGGVVLV 672 (723)
Q Consensus 600 ~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral-~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~------~~tVIiv 672 (723)
..++..++... +....+.++.......... ..+|.||+|||+... |......|..++.++ +..||++
T Consensus 92 ~~l~~~l~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~ 165 (389)
T 1fnn_A 92 GEIARSLNIPF-----PRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIV 165 (389)
T ss_dssp HHHHHHTTCCC-----CSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEE
T ss_pred HHHHHHhCccC-----CCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEE
Confidence 33444555421 1123444443332221111 245889999999876 988888888888543 4579999
Q ss_pred ecCHHHHHHh
Q 048654 673 SHDSRLISRV 682 (723)
Q Consensus 673 SHD~~~~~~~ 682 (723)
||+.++...+
T Consensus 166 ~~~~~~~~~l 175 (389)
T 1fnn_A 166 GHNDAVLNNL 175 (389)
T ss_dssp ESSTHHHHTS
T ss_pred ECCchHHHHh
Confidence 9998765544
No 318
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.02 E-value=1e-05 Score=87.49 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=48.1
Q ss_pred CCCCCCChHHHHHHHHHHHHccCCCEEEEe-CCCCCCCHHHHHHHHHHHhh-c-CcEEEEEe--CCHH
Q 048654 316 RPTKSFSGGWRMRISLARALFVQPTLLLLD-EPTNHLDLRAVLWLEEYLCR-W-KKTLVVVS--HDRD 378 (723)
Q Consensus 316 ~~~~~LSGGqrQRvaLArAL~~~P~lLLLD-EPT~~LD~~~~~~L~~~L~~-~-~~TVIivs--Hdl~ 378 (723)
.++..+|+|++|++. +.+...++-|+++| +|++++|......+...+.. . +..+|+|. ||+.
T Consensus 227 ~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 227 RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 566789999998876 66666788899999 99999999887666555554 3 57788888 8874
No 319
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=2.4e-06 Score=84.23 Aligned_cols=37 Identities=27% Similarity=0.151 Sum_probs=23.9
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 178 ~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
...++||||++.+|++++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999999999999999964
No 320
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.01 E-value=2.9e-06 Score=83.50 Aligned_cols=32 Identities=28% Similarity=0.322 Sum_probs=26.9
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHhCCCC
Q 048654 186 VRISHGKRYGLVGPNGMGKSTLLKLLAWRKIP 217 (723)
Q Consensus 186 l~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~ 217 (723)
++|.+|++++|+||||||||||+++|++.+.+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 46889999999999999999999999998643
No 321
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.98 E-value=2.5e-06 Score=83.26 Aligned_cols=26 Identities=42% Similarity=0.494 Sum_probs=23.8
Q ss_pred CcEEEEECCCCccHHHHHHHHHhCCC
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAWRKI 216 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G~~~ 216 (723)
|++++|+||||||||||+++|+|+..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999999753
No 322
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.97 E-value=3.5e-05 Score=83.11 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=36.9
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHhh------cCcEEEEEeCCHHHHHhhC
Q 048654 337 VQPTLLLLDEPTNHLDLRAVLWLEEYLCR------WKKTLVVVSHDRDFLNTVC 384 (723)
Q Consensus 337 ~~P~lLLLDEPT~~LD~~~~~~L~~~L~~------~~~TVIivsHdl~~l~~ia 384 (723)
..|.||+|||+... |......|..++.+ .+.+||+++|+.++...+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~ 176 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLD 176 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSC
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhC
Confidence 45889999999876 98888888888753 3568999999987665543
No 323
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.97 E-value=2.2e-06 Score=83.22 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=29.7
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCC-CcceEE
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLSP-TEGEVR 555 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p-~~G~I~ 555 (723)
.+|++++|+||||||||||+++|++.+++ ..|.|.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~ 38 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeee
Confidence 36899999999999999999999998874 455554
No 324
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.97 E-value=3.1e-06 Score=83.51 Aligned_cols=38 Identities=29% Similarity=0.357 Sum_probs=24.8
Q ss_pred ccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 510 DFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 510 ~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
...++||||++.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999999999999999999765
No 325
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.96 E-value=1e-06 Score=99.81 Aligned_cols=42 Identities=26% Similarity=0.213 Sum_probs=37.2
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCC
Q 048654 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPK 220 (723)
Q Consensus 179 ~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~ 220 (723)
.++++++|.+.+|+.++|+|||||||||||++|+|+..+..+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~g 289 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAK 289 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCC
Confidence 467899999999999999999999999999999998755433
No 326
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.95 E-value=2.8e-05 Score=83.59 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=25.6
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
-|++|+++.|.||+|||||||+..|+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998864
No 327
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.93 E-value=5.3e-05 Score=81.76 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=31.3
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeee
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQ 229 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q 229 (723)
-|++|+++.|+||||||||||+..|++...+ ..+.+.|++.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~ 97 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDA 97 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEES
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEec
Confidence 3889999999999999999999999865322 2234555543
No 328
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.89 E-value=4.2e-06 Score=82.57 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=29.5
Q ss_pred EEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 517 DVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 517 sl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
.+...+|++++|+||||||||||+++|+|.+ |.+.+++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 3556789999999999999999999999976 7776554
No 329
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.89 E-value=1.4e-05 Score=85.66 Aligned_cols=126 Identities=14% Similarity=0.209 Sum_probs=74.6
Q ss_pred eeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCC
Q 048654 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEG 592 (723)
Q Consensus 513 L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (723)
|+.+.--+.+|+.+.|.|++|+|||||+..|+.......+ .+.|++-. ........
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~--------~Vl~fSlE--------ms~~ql~~-------- 91 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR--------GVAVFSLE--------MSAEQLAL-------- 91 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--------EEEEEESS--------SCHHHHHH--------
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC--------eEEEEeCC--------CCHHHHHH--------
Confidence 5555556899999999999999999999888764332111 23444321 11111110
Q ss_pred CcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHH-HHc-CceEE
Q 048654 593 LSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADAL-DEF-TGGVV 670 (723)
Q Consensus 593 ~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L-~~~-~~tVI 670 (723)
++......+++... +. +.||.++++|+..|...+.+++|+|.|+|... +.........+ ++. +..+|
T Consensus 92 -----Rlls~~~~v~~~~l---~~-g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lI 160 (338)
T 4a1f_A 92 -----RALSDLTSINMHDL---ES-GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIA 160 (338)
T ss_dssp -----HHHHHHHCCCHHHH---HH-TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEE
T ss_pred -----HHHHHhhCCCHHHH---hc-CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEE
Confidence 11111111221110 11 47999999999999999999999999998644 44444433333 333 34555
Q ss_pred EEe
Q 048654 671 LVS 673 (723)
Q Consensus 671 ivS 673 (723)
||-
T Consensus 161 VID 163 (338)
T 4a1f_A 161 FID 163 (338)
T ss_dssp EEE
T ss_pred EEe
Confidence 553
No 330
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.86 E-value=1.6e-05 Score=86.31 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=43.6
Q ss_pred HHHHHHHhCCCCccc---cCCCCCCCChHHHHHHHHH----HHH-ccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 048654 299 QASKILAGLGFTKEM---QGRPTKSFSGGWRMRISLA----RAL-FVQPTLLLLDEPTNHLDLRAVLWLEEYLCR 365 (723)
Q Consensus 299 ~~~~~L~~lgl~~~~---~~~~~~~LSGGqrQRvaLA----rAL-~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~ 365 (723)
.+.++|..+++.... ...++..+|+|+++|+.++ +++ ..+|++ +|+|++|..+...|.+.|.+
T Consensus 280 ~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 280 SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence 345667776653211 1244667898988988877 666 444554 89999999999888887764
No 331
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.85 E-value=4e-05 Score=81.67 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=25.5
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
-|++|+++.|.|++|+|||||+..|+..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4889999999999999999999998853
No 332
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.84 E-value=3e-06 Score=87.14 Aligned_cols=35 Identities=31% Similarity=0.446 Sum_probs=33.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHH---cCCCCCcceEE
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLA---GDLSPTEGEVR 555 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~---Gl~~p~~G~I~ 555 (723)
.+|++++|+||||||||||+++|+ |+..+++|.|+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 99999999987
No 333
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.81 E-value=4.5e-06 Score=88.20 Aligned_cols=37 Identities=27% Similarity=0.229 Sum_probs=27.5
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEE
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLL 226 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~ 226 (723)
+..|++++|+|||||||||||++|+|+..|.. |.|.+
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~--G~i~~ 202 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRV--SEVSE 202 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccc--cceec
Confidence 44689999999999999999999999876544 44443
No 334
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.79 E-value=1e-05 Score=78.54 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=24.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
.+|++++|+||||||||||+++|++..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 368999999999999999999999864
No 335
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.79 E-value=1.3e-06 Score=93.06 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=46.5
Q ss_pred EEEEeCCeeeeEeeeEEEeCCc------EEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeee
Q 048654 171 FSVAARGKELLKSTSVRISHGK------RYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQE 230 (723)
Q Consensus 171 ls~~y~~~~vL~~isl~i~~Ge------~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~ 230 (723)
+++.|++...|.+++..|..+. ++||+||||||||||+++|+++....++.+.+.++..+
T Consensus 66 l~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 66 LSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred HHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 4555777788888888888877 99999999999999999999876544445555555443
No 336
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.78 E-value=1.1e-05 Score=79.63 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=24.5
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 185 SVRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 185 sl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
.++..+|++++|+|+||||||||+++|++..
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3667889999999999999999999999863
No 337
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.73 E-value=1.5e-05 Score=79.24 Aligned_cols=29 Identities=28% Similarity=0.507 Sum_probs=27.5
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLSP 549 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p 549 (723)
.+|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999987
No 338
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.73 E-value=6.9e-06 Score=81.23 Aligned_cols=37 Identities=27% Similarity=0.185 Sum_probs=33.5
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
..+|.+++|+|+||||||||+++|++.+++..|.|.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~ 55 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEE
Confidence 5689999999999999999999999999888888754
No 339
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.72 E-value=6.7e-05 Score=83.00 Aligned_cols=35 Identities=26% Similarity=0.209 Sum_probs=30.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
++.+++|+|+|||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999998877666643
No 340
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.71 E-value=1.1e-05 Score=81.63 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=31.1
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
...+|++++|+|+||||||||+++|+|+ .|.|.+.+
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 4578999999999999999999999998 67776544
No 341
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.71 E-value=8.8e-07 Score=90.72 Aligned_cols=48 Identities=25% Similarity=0.379 Sum_probs=41.8
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
.+++++.+.|++..+++++++++++| ++|+||||||||||+++|++..
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence 44566777777778999999999999 9999999999999999999864
No 342
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.70 E-value=2e-05 Score=84.68 Aligned_cols=128 Identities=15% Similarity=0.209 Sum_probs=69.0
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCCCCcHHHHHH
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQEGLSKQEAVR 600 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (723)
..+..+.|+||+|+|||||++.+++.+.+..|. ...+.++.-. .. . . ......
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-----~~~~~~i~~~--~~-~---~----------------~~~~~~ 95 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-----KFKHVYINTR--QI-D---T----------------PYRVLA 95 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-----SCEEEEEEHH--HH-C---S----------------HHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-----CceEEEEECC--CC-C---C----------------HHHHHH
Confidence 457789999999999999999999876543321 0111122100 00 0 0 111222
Q ss_pred HHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHH--ccCCCeEEeccCCCCCC---HHHHHHHHHHHHHc---CceEEEE
Q 048654 601 AKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSIS--MSKPHILLLDEPTNHLD---MQSIDALADALDEF---TGGVVLV 672 (723)
Q Consensus 601 ~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral--~~~p~lLlLDEPT~~LD---~~s~~~l~~~L~~~---~~tVIiv 672 (723)
.++..++... +....+..+...... .++ ...|.||++||+....+ ......+.+.+..+ +..+|++
T Consensus 96 ~i~~~l~~~~-----~~~~~~~~~~~~~l~-~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~ 169 (386)
T 2qby_A 96 DLLESLDVKV-----PFTGLSIAELYRRLV-KAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGI 169 (386)
T ss_dssp HHTTTTSCCC-----CSSSCCHHHHHHHHH-HHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEE
T ss_pred HHHHHhCCCC-----CCCCCCHHHHHHHHH-HHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEE
Confidence 3333344321 112344444222222 222 23388999999987653 33445555555432 3578999
Q ss_pred ecCHHHHHH
Q 048654 673 SHDSRLISR 681 (723)
Q Consensus 673 SHD~~~~~~ 681 (723)
||+..+...
T Consensus 170 ~~~~~~~~~ 178 (386)
T 2qby_A 170 TNDVKFVDL 178 (386)
T ss_dssp ESCGGGGGG
T ss_pred ECCCChHhh
Confidence 998865443
No 343
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.70 E-value=1.4e-05 Score=81.97 Aligned_cols=35 Identities=31% Similarity=0.353 Sum_probs=24.4
Q ss_pred eCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHH
Q 048654 175 ARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 175 y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
++...++++.+ .+|++++|+||||||||||+++|+
T Consensus 14 ~~~~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 14 FPGRLERPHMT---AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp ---------CT---TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CcchhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHH
Confidence 34444555554 789999999999999999999999
No 344
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.70 E-value=0.00022 Score=76.94 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=31.5
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceE
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I 554 (723)
-|.+|+++.|+||||||||||+..|++...+..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 478999999999999999999999998877666654
No 345
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.69 E-value=2.7e-05 Score=83.60 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=30.6
Q ss_pred CCEEEEeCCCCCCC---HHHHHHHHHHHhh---cCcEEEEEeCCHHHHHhh
Q 048654 339 PTLLLLDEPTNHLD---LRAVLWLEEYLCR---WKKTLVVVSHDRDFLNTV 383 (723)
Q Consensus 339 P~lLLLDEPT~~LD---~~~~~~L~~~L~~---~~~TVIivsHdl~~l~~i 383 (723)
|.||+|||+...++ ......|.+.+.. .+.++|++||+..+...+
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 88999999988663 3445555555532 246899999998754443
No 346
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.69 E-value=0.0061 Score=78.25 Aligned_cols=28 Identities=36% Similarity=0.539 Sum_probs=24.8
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
|.+|.++.|.||+|+|||||+..++...
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987776543
No 347
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.68 E-value=2.7e-05 Score=82.70 Aligned_cols=53 Identities=9% Similarity=0.104 Sum_probs=39.1
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHH-HHHHHhhcCcE--EEEEeC
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLW-LEEYLCRWKKT--LVVVSH 375 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~-L~~~L~~~~~T--VIivsH 375 (723)
||.++.+|+..|...+.++++++.|+|. +++..... +..+.++.+.. +|||.|
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 8899999999999999999999999986 44444333 23333344556 888876
No 348
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.67 E-value=9.3e-05 Score=79.91 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=28.0
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 178 ~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
..+|++++++++ .++|||++|||||||++.|+|..
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCC
Confidence 458999999998 89999999999999999999953
No 349
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.67 E-value=4.1e-06 Score=88.64 Aligned_cols=33 Identities=24% Similarity=0.225 Sum_probs=24.4
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHhCCCCCCC
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPK 220 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~ 220 (723)
+.+|++++|+||||+|||||+|+|+|...+..|
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G 202 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTN 202 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhccccccccc
Confidence 447999999999999999999999987654433
No 350
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.67 E-value=1.1e-06 Score=91.43 Aligned_cols=47 Identities=26% Similarity=0.406 Sum_probs=40.8
Q ss_pred EEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 167 TIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 167 ~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
+++++.+.|+...+|++++|++++| ++|+||||||||||+++|++..
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence 3456666677778899999999999 9999999999999999999864
No 351
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.67 E-value=6.4e-06 Score=89.72 Aligned_cols=37 Identities=27% Similarity=0.305 Sum_probs=34.8
Q ss_pred eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 178 KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 178 ~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
..+|+++++.+++|++++|+||||||||||+++|+|.
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3689999999999999999999999999999999985
No 352
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.67 E-value=7.1e-06 Score=87.49 Aligned_cols=44 Identities=25% Similarity=0.199 Sum_probs=39.8
Q ss_pred eeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 513 L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
+.+++|.+.+|++++|+|+||+||||++..|++.+.+..|+|.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVll 138 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLI 138 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 36788889999999999999999999999999999988888865
No 353
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.66 E-value=1.7e-05 Score=78.54 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=26.9
Q ss_pred EEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 517 DVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 517 sl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34456899999999999999999999999876
No 354
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.65 E-value=2.5e-05 Score=77.59 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=25.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHhCCC
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAWRKI 216 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G~~~ 216 (723)
++|++++|+||||||||||++.|++.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999998754
No 355
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.63 E-value=9.3e-06 Score=82.99 Aligned_cols=57 Identities=28% Similarity=0.384 Sum_probs=45.0
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
.+++++.+.|.. ..++++++|++.+| ++|+||||||||||+++|++.+. .|.|.+.+
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~ 82 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 82 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeH
Confidence 345566666643 24789999999999 99999999999999999999875 67776543
No 356
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.62 E-value=7.6e-06 Score=87.17 Aligned_cols=156 Identities=16% Similarity=0.087 Sum_probs=80.8
Q ss_pred cceeceEEEEecCc------EEEEEcCCCCcHHHHHHHHHcCCC--CCcceEEECCceeEEEEccccccccCccccHHHH
Q 048654 511 FKLSDVDVGIDMGT------RVAIVGPNGAGKSTLLNLLAGDLS--PTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSY 582 (723)
Q Consensus 511 ~~L~~isl~i~~Ge------~vaIvGpNGsGKSTLlk~L~Gl~~--p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~ 582 (723)
..|.+++..+..+. ++||+||||||||||+++|.+++. |..|.| +.+.++-+ .........
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v--------~~i~~D~f---~~~~~~l~~ 142 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNV--------EVITTDGF---LYSNAKLEK 142 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCE--------EEEEGGGG---BCCHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeE--------EEEeeccc---ccchhhhhh
Confidence 35667777776665 999999999999999999999987 455554 33333211 011010100
Q ss_pred --HHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHH--HHH
Q 048654 583 --LLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSI--DAL 658 (723)
Q Consensus 583 --~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~--~~l 658 (723)
....+... ...+...+.+.|..+.-.......| .+|.+..+|+..+...+..|+|||++-|..-.|.... ..=
T Consensus 143 ~~~~~~~g~P-~~~D~~~l~~~L~~L~~g~~~v~~P--~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~ 219 (321)
T 3tqc_A 143 QGLMKRKGFP-ESYDMPSLLRVLNAIKSGQRNVRIP--VYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQL 219 (321)
T ss_dssp TTCGGGTTSG-GGBCHHHHHHHHHHHHTTCSSEEEE--EEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSC
T ss_pred HHHHhhccCc-ccccHHHHHHHHHhhhccccccccc--hhhhhccccccCceeeccCCCEEEEEccccccccccccccch
Confidence 00000000 0012233444444432211011223 2444444444333445678999999999887775200 000
Q ss_pred HHHHHHcCceEEEEecCHHHHH
Q 048654 659 ADALDEFTGGVVLVSHDSRLIS 680 (723)
Q Consensus 659 ~~~L~~~~~tVIivSHD~~~~~ 680 (723)
...+..+...+|+|.-+.+...
T Consensus 220 ~~~l~~~~D~~I~Vda~~d~~~ 241 (321)
T 3tqc_A 220 QVFVSDFFDFSLFVDAQAQVIQ 241 (321)
T ss_dssp CCCGGGGCSEEEEEECCHHHHH
T ss_pred hhhhhhhcCeEEEEECCHHHHH
Confidence 0012233345777877766554
No 357
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.60 E-value=1.1e-05 Score=83.90 Aligned_cols=132 Identities=20% Similarity=0.257 Sum_probs=76.5
Q ss_pred EEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCce-----------eEEE
Q 048654 496 LQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKL-----------RIGR 564 (723)
Q Consensus 496 l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~-----------~ig~ 564 (723)
.+++++.+.|.. ..++++++|.+.+| ++|+||||||||||+++|++.+. .|.|.+.+.. .+++
T Consensus 50 ~~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 50 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 345566666653 24789999999999 89999999999999999999875 6777654321 1223
Q ss_pred Eccccc---cccCccccHHHHHHhhCCCCCCCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeE
Q 048654 565 YSQHFV---DLLTMEETPVSYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHIL 641 (723)
Q Consensus 565 ~~q~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lL 641 (723)
++|... ..+.+.+.. ..+........+. ........+.. .+..|||||+||+.|++++..+|++
T Consensus 124 ~~~~~~~~~~~i~~iDei-d~l~~~~~~~~~~-~~~~~~~~~~~----------ll~~lsgg~~~~~~i~~a~t~~p~~- 190 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEI-DAVGRKRGSGVGG-GNDEREQTLNQ----------LLVEMDGFEKDTAIVVMAATNRPDI- 190 (278)
T ss_dssp HHHHHHTSCSEEEEEETH-HHHHCC---------CHHHHHHHHH----------HHHHHTTCCTTCCEEEEEEESCTTS-
T ss_pred HHHHHHhcCCcEEehhhh-HhhhcccccccCC-cchHHHHHHHH----------HHHHHhCCCCCCCEEEEEecCCchh-
Confidence 333211 011111111 1111000000000 00111111111 1246899999999999999999987
Q ss_pred EeccCC
Q 048654 642 LLDEPT 647 (723)
Q Consensus 642 lLDEPT 647 (723)
||++.
T Consensus 191 -ld~~l 195 (278)
T 1iy2_A 191 -LDPAL 195 (278)
T ss_dssp -SCHHH
T ss_pred -CCHhH
Confidence 67664
No 358
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.58 E-value=0.00021 Score=78.95 Aligned_cols=39 Identities=31% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeee
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQE 230 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~ 230 (723)
++.+++|+|+|||||||++..|++.+.. ...++.+++.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~--~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK--RGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEecC
Confidence 5789999999999999999999976432 23355555543
No 359
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.58 E-value=3.9e-05 Score=81.02 Aligned_cols=38 Identities=11% Similarity=-0.094 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhCCCCccccCCCCCCCChHHHHHHHHHH
Q 048654 296 AEAQASKILAGLGFTKEMQGRPTKSFSGGWRMRISLAR 333 (723)
Q Consensus 296 ~~~~~~~~L~~lgl~~~~~~~~~~~LSGGqrQRvaLAr 333 (723)
...++.++|+.++|.....++++..|||.+++++.|||
T Consensus 263 ~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 263 PGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp TTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34578999999999754557889999999999999986
No 360
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.58 E-value=5.6e-05 Score=83.45 Aligned_cols=51 Identities=16% Similarity=-0.014 Sum_probs=41.6
Q ss_pred EEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 500 EVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 500 ~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
++++.|++.. .+++|+ +|++++|+|+|||||||++..|++.+.+..|+|.+
T Consensus 81 ~L~~~~~~~~----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vll 131 (425)
T 2ffh_A 81 ALKEALGGEA----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 131 (425)
T ss_dssp HHHHHTTSSC----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHhCCCc----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 4555565421 567777 89999999999999999999999999998888764
No 361
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.55 E-value=2.7e-05 Score=74.66 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=28.4
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
.+|++++|+|+||||||||+++|++.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 368999999999999999999999865 5555543
No 362
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.54 E-value=3e-05 Score=73.99 Aligned_cols=28 Identities=43% Similarity=0.541 Sum_probs=25.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLSP 549 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p 549 (723)
.|.+++|+|+||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999999997654
No 363
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.53 E-value=1.8e-05 Score=90.40 Aligned_cols=40 Identities=38% Similarity=0.362 Sum_probs=35.5
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc-eEE-ECC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG-EVR-RSQ 558 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G-~I~-~~~ 558 (723)
.+.+|++++|+|+||||||||+++|+|.+.|++| .|. +++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5789999999999999999999999999999887 674 554
No 364
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.53 E-value=1.3e-05 Score=84.59 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHc--cCCCeEEeccCCCCCCHHH-HHHHHHHHHHc----Cc--eEEEEecCHHHHHHhc
Q 048654 620 LSGGQKARVVFTSISM--SKPHILLLDEPTNHLDMQS-IDALADALDEF----TG--GVVLVSHDSRLISRVC 683 (723)
Q Consensus 620 LSGGqkqRv~lAral~--~~p~lLlLDEPT~~LD~~s-~~~l~~~L~~~----~~--tVIivSHD~~~~~~~~ 683 (723)
+|+|++ .+++.+. ..|.||++ |.+|... ...+.+.+.++ +. .+.+++|+..-+..++
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~ 166 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIA 166 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHH
Confidence 898886 4556665 67889998 8899865 55555555543 32 4555667665555554
No 365
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.52 E-value=0.00019 Score=80.11 Aligned_cols=57 Identities=14% Similarity=-0.035 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHHH
Q 048654 324 GWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFL 380 (723)
Q Consensus 324 GqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~l 380 (723)
.+.+...++...+.+++++|+.-....-....-.++.++|++.+..+|+|.+-.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 477777788888889998888776554333445678888888788888887765543
No 366
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.51 E-value=0.0002 Score=76.91 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=25.6
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.|++|+++.|.||+|||||||+..|+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998874
No 367
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.50 E-value=0.00032 Score=89.83 Aligned_cols=31 Identities=35% Similarity=0.550 Sum_probs=27.1
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP 549 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p 549 (723)
-|.+|+++.|.|++|+|||||+..++.....
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~ 758 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4889999999999999999999988875543
No 368
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.49 E-value=3.1e-05 Score=78.21 Aligned_cols=30 Identities=20% Similarity=0.098 Sum_probs=26.8
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 185 SVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 185 sl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+.+..+|++++|+|+||||||||+++|+|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345578999999999999999999999986
No 369
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.49 E-value=1.1e-05 Score=94.33 Aligned_cols=131 Identities=17% Similarity=0.121 Sum_probs=69.6
Q ss_pred EEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC--CcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCC---
Q 048654 517 DVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP--TEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQE--- 591 (723)
Q Consensus 517 sl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p--~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~--- 591 (723)
++.+.+|..++|+|+||+|||||++.|++...+ ..|+| ..+.. ..+ ....+. .+......
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~--------~~d-----~~~~e~-~~giti~~~~~ 67 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTT--------TTD-----YTPEAK-LHRTTVRTGVA 67 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCC--------SSC-----CSHHHH-HTTSCCSCEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcc--------ccc-----CCHHHH-hcCCeEEecce
Confidence 456788999999999999999999999976654 45665 22110 000 000000 00000000
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHHHHHHcCceEEE
Q 048654 592 GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVL 671 (723)
Q Consensus 592 ~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~~tVIi 671 (723)
..... . ..+.| .+.| +.-. -.......+-..+.-+|++| |+.+++..+.. ++..+...+..+|+
T Consensus 68 ~~~~~----~--~~~nl----iDTp-G~~~---f~~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~-~~~~~~~~~ip~il 131 (665)
T 2dy1_A 68 PLLFR----G--HRVFL----LDAP-GYGD---FVGEIRGALEAADAALVAVS-AEAGVQVGTER-AWTVAERLGLPRMV 131 (665)
T ss_dssp EEEET----T--EEEEE----EECC-CSGG---GHHHHHHHHHHCSEEEEEEE-TTTCSCHHHHH-HHHHHHHTTCCEEE
T ss_pred EEeeC----C--EEEEE----EeCC-Cccc---hHHHHHHHHhhcCcEEEEEc-CCcccchhHHH-HHHHHHHccCCEEE
Confidence 00000 0 00111 1111 1000 01223333445678899999 99999988774 44555566778889
Q ss_pred EecCHHH
Q 048654 672 VSHDSRL 678 (723)
Q Consensus 672 vSHD~~~ 678 (723)
|.|.++.
T Consensus 132 v~NKiD~ 138 (665)
T 2dy1_A 132 VVTKLDK 138 (665)
T ss_dssp EEECGGG
T ss_pred EecCCch
Confidence 9998875
No 370
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.48 E-value=0.00055 Score=71.26 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHHHHccCCCEEEEeCCCCCCCH----------HHHHHHHHHHhhc-------CcEEEEEeCCHH
Q 048654 322 SGGWRMRISLARALFVQPTLLLLDEPTNHLDL----------RAVLWLEEYLCRW-------KKTLVVVSHDRD 378 (723)
Q Consensus 322 SGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~----------~~~~~L~~~L~~~-------~~TVIivsHdl~ 378 (723)
++++..|..+..+...+|.+|++||+.+-++. .....|...+... +..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 46778888888888899999999999887653 2233444545443 135777888754
No 371
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.47 E-value=6.3e-05 Score=70.93 Aligned_cols=29 Identities=38% Similarity=0.568 Sum_probs=24.4
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHH
Q 048654 183 STSVRISHGKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 183 ~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
+..+.+.+| +++|+||||||||||+.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 445566665 99999999999999999997
No 372
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.46 E-value=0.00062 Score=75.09 Aligned_cols=57 Identities=25% Similarity=0.261 Sum_probs=42.9
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeee
Q 048654 169 DNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEV 231 (723)
Q Consensus 169 ~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~ 231 (723)
+++++.|++.. ++++|+ +|++++|+|+|||||||++..|++.+.+. .+.+.+++.++
T Consensus 80 ~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~ 136 (425)
T 2ffh_A 80 EALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADT 136 (425)
T ss_dssp HHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCS
T ss_pred HHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeeccc
Confidence 45666676544 678887 89999999999999999999999876433 34566665543
No 373
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.45 E-value=0.00017 Score=76.77 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=25.4
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.|.+|+++.|.||+|+|||||+..|+..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999888764
No 374
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.45 E-value=5.9e-05 Score=72.23 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=24.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+|++++|+|+||||||||+++|++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 46899999999999999999999975
No 375
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.44 E-value=0.00038 Score=70.24 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=31.3
Q ss_pred ccCCCeEEeccCCCCCCHHHHHHHHHHHHHcC-----ceEEEEec-CH
Q 048654 635 MSKPHILLLDEPTNHLDMQSIDALADALDEFT-----GGVVLVSH-DS 676 (723)
Q Consensus 635 ~~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~-----~tVIivSH-D~ 676 (723)
..+++++|+..+.+.++......+..++..++ -.||+++| |.
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~ 157 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDD 157 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence 35789999999998888877776666665443 37888898 54
No 376
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.42 E-value=7.6e-05 Score=70.36 Aligned_cols=31 Identities=42% Similarity=0.582 Sum_probs=25.3
Q ss_pred eeceEEEEecCcEEEEEcCCCCcHHHHHHHHH
Q 048654 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLA 544 (723)
Q Consensus 513 L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~ 544 (723)
+.+..+++.+| +.+|+||||||||||+.+|.
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34556666655 89999999999999999986
No 377
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.42 E-value=6.3e-05 Score=74.41 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=25.7
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 185 SVRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 185 sl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
|+...+|++++|+||||||||||++.|++..
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 3445589999999999999999999999864
No 378
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.40 E-value=0.00012 Score=77.58 Aligned_cols=130 Identities=12% Similarity=0.125 Sum_probs=71.1
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCC
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQE 591 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 591 (723)
.|+.+.--+.+|+++.|.|++|+|||||+..++...-- .| ..+.|+.-. .......
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g-------~~vl~~slE--------~s~~~l~-------- 112 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND-------DVVNLHSLE--------MGKKENI-------- 112 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT-------CEEEEEESS--------SCHHHHH--------
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC-------CeEEEEECC--------CCHHHHH--------
Confidence 46666556899999999999999999998887643211 12 123444311 1111110
Q ss_pred CCcHHHHHHHHHHhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHHH-HHHHcCce--
Q 048654 592 GLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALAD-ALDEFTGG-- 668 (723)
Q Consensus 592 ~~~~~~~~~~~L~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~~-~L~~~~~t-- 668 (723)
.++......+.+.... ..-..||+++++|+..|...+.++++++.|+|. +++........ +..+.+..
T Consensus 113 -----~R~~~~~~~i~~~~l~--~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~ 183 (315)
T 3bh0_A 113 -----KRLIVTAGSINAQKIK--AARRDFASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRV 183 (315)
T ss_dssp -----HHHHHHHTTCCHHHHH--SCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCE
T ss_pred -----HHHHHHHcCCCHHHHh--cCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCe
Confidence 0111111111111110 100128888889988888888888888888886 34444333222 22333444
Q ss_pred EEEEec
Q 048654 669 VVLVSH 674 (723)
Q Consensus 669 VIivSH 674 (723)
+|||-|
T Consensus 184 lVVID~ 189 (315)
T 3bh0_A 184 IVMIDY 189 (315)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 666643
No 379
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.40 E-value=6.3e-05 Score=71.71 Aligned_cols=26 Identities=42% Similarity=0.498 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
.|.+++|+|+||||||||+++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999999999863
No 380
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.40 E-value=2.1e-05 Score=85.02 Aligned_cols=52 Identities=27% Similarity=0.376 Sum_probs=46.4
Q ss_pred eEEEEEEEEEcCCCccccee--------------ceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 495 LLQLIEVSFSYPNREDFKLS--------------DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 495 ~l~~~~ls~~y~~~~~~~L~--------------~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
-+.++|+++.|+.. ...|+ |+.+.|.+|++++|+||+|+|||||++.|++.+
T Consensus 133 ri~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 46788999999865 45788 899999999999999999999999999998865
No 381
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.40 E-value=2e-05 Score=85.26 Aligned_cols=50 Identities=24% Similarity=0.340 Sum_probs=45.3
Q ss_pred ceEEEeEEEEeCC-eeeeE--------------eeeEEEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 165 DITIDNFSVAARG-KELLK--------------STSVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 165 ~I~l~nls~~y~~-~~vL~--------------~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+.++|+++.|+. +.+|+ |+.+.|.+|++++|+||+|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4778899999975 56898 89999999999999999999999999999875
No 382
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.39 E-value=0.00031 Score=73.20 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHHHccCCCeEEeccCCCCCCH----------HHHHHHHHHHHHcC-------ceEEEEecCHH
Q 048654 621 SGGQKARVVFTSISMSKPHILLLDEPTNHLDM----------QSIDALADALDEFT-------GGVVLVSHDSR 677 (723)
Q Consensus 621 SGGqkqRv~lAral~~~p~lLlLDEPT~~LD~----------~s~~~l~~~L~~~~-------~tVIivSHD~~ 677 (723)
++++..+..+..+...+|.+|++||+.+-++. .....+...+..+. ..||.+|++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 46788888888888899999999999876553 22334555555542 23777888653
No 383
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.39 E-value=0.00024 Score=79.01 Aligned_cols=41 Identities=17% Similarity=0.124 Sum_probs=31.4
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHhh---cCcEEEEEeCCH
Q 048654 337 VQPTLLLLDEPTNHLDL-RAVLWLEEYLCR---WKKTLVVVSHDR 377 (723)
Q Consensus 337 ~~P~lLLLDEPT~~LD~-~~~~~L~~~L~~---~~~TVIivsHdl 377 (723)
.+|+|||+||+..-.+. .....|...+.. .+..||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 566667776654 357899999973
No 384
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.37 E-value=1.8e-05 Score=84.97 Aligned_cols=46 Identities=26% Similarity=0.193 Sum_probs=40.7
Q ss_pred cceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 511 FKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 511 ~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
.+++++++.+..|.+++|+|+||+|||||++.|+|.+.+..|+|.+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 3678889999999999999999999999999999998877777643
No 385
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.37 E-value=0.00098 Score=71.91 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=24.1
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHh
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
|++|+++.|.|++|+|||||+..++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999999988774
No 386
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.35 E-value=5.4e-05 Score=88.53 Aligned_cols=47 Identities=11% Similarity=-0.042 Sum_probs=35.9
Q ss_pred HHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCCHHH
Q 048654 331 LARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDF 379 (723)
Q Consensus 331 LArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHdl~~ 379 (723)
...+-..+..+|++| |+.++++.+..++.. +...+.++|++.|.++.
T Consensus 92 ~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~-~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 92 RGALEAADAALVAVS-AEAGVQVGTERAWTV-AERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHHHCSEEEEEEE-TTTCSCHHHHHHHHH-HHHTTCCEEEEEECGGG
T ss_pred HHHHhhcCcEEEEEc-CCcccchhHHHHHHH-HHHccCCEEEEecCCch
Confidence 334446788999999 999999988865544 45567888889998875
No 387
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.34 E-value=0.00094 Score=67.33 Aligned_cols=40 Identities=18% Similarity=0.143 Sum_probs=30.7
Q ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHhhc-----CcEEEEEeC
Q 048654 336 FVQPTLLLLDEPTNHLDLRAVLWLEEYLCRW-----KKTLVVVSH 375 (723)
Q Consensus 336 ~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~~-----~~TVIivsH 375 (723)
..+|+++|+..+.+.++.....++..++..+ ..+||+++|
T Consensus 110 ~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 110 SPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 3478999999999999887777776665433 248888888
No 388
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.31 E-value=7e-05 Score=73.86 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=26.1
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHhCCC
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAWRKI 216 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~ 216 (723)
..+|.+++|+|+||||||||+++|++...
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999999998643
No 389
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.28 E-value=9.8e-05 Score=74.69 Aligned_cols=42 Identities=26% Similarity=0.431 Sum_probs=31.3
Q ss_pred eeceEEEEe---cCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEE
Q 048654 513 LSDVDVGID---MGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVR 555 (723)
Q Consensus 513 L~~isl~i~---~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~ 555 (723)
|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 667777776 8999999999999999999999999887 66654
No 390
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.26 E-value=0.00025 Score=70.29 Aligned_cols=30 Identities=37% Similarity=0.521 Sum_probs=24.9
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHHh
Q 048654 183 STSVRISHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 183 ~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
+.++.+.+| +++|+||||||||||+.+|..
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 445666665 999999999999999999973
No 391
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.25 E-value=0.00011 Score=72.40 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=27.5
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
++.+|.+++|+|++|||||||+++|++.++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999999999864
No 392
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.25 E-value=4e-05 Score=76.53 Aligned_cols=34 Identities=38% Similarity=0.577 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC---CCCcceEEE
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDL---SPTEGEVRR 556 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~---~p~~G~I~~ 556 (723)
+.+++|+||+||||||++++|++.+ .++.|.+.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999765 566777654
No 393
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.25 E-value=5.7e-05 Score=80.44 Aligned_cols=50 Identities=24% Similarity=0.222 Sum_probs=39.2
Q ss_pred eeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeee
Q 048654 180 LLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEV 231 (723)
Q Consensus 180 vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~ 231 (723)
++.+++|++.+|++++|+|+||+||||++..|++.+.+ ..++|.+++.++
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~ 143 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADT 143 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 34688999999999999999999999999999987543 345666665543
No 394
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.24 E-value=5.7e-06 Score=88.93 Aligned_cols=51 Identities=25% Similarity=0.303 Sum_probs=42.4
Q ss_pred eEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCC
Q 048654 166 ITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKI 216 (723)
Q Consensus 166 I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~ 216 (723)
++.+++.+.|+.+.+++++++.+.+|.+++|+|+||+|||||++.|++...
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 344455556666778999999999999999999999999999999997643
No 395
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.22 E-value=0.00011 Score=72.37 Aligned_cols=29 Identities=34% Similarity=0.275 Sum_probs=26.2
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
++.+|.+++|+|++|||||||+++|++.+
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999999999763
No 396
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.15 E-value=0.00011 Score=79.10 Aligned_cols=35 Identities=31% Similarity=0.532 Sum_probs=30.6
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
.+.+++|+|++|||||||++.|+|.+.+..|+|.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 56789999999999999999999988877777643
No 397
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.14 E-value=0.00039 Score=77.23 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=31.1
Q ss_pred cCCCeEEeccCCCCCCH-HHHHHHHHHHHHc---CceEEEEecC
Q 048654 636 SKPHILLLDEPTNHLDM-QSIDALADALDEF---TGGVVLVSHD 675 (723)
Q Consensus 636 ~~p~lLlLDEPT~~LD~-~s~~~l~~~L~~~---~~tVIivSHD 675 (723)
.+|+|||+||+..-.+. .....+...+..+ +..||++||+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 48999999999877664 5677777777654 3578889987
No 398
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.11 E-value=0.00014 Score=69.99 Aligned_cols=31 Identities=35% Similarity=0.382 Sum_probs=26.9
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G 552 (723)
.+|.+++|+|++||||||++++|++.+.+ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 36899999999999999999999998765 44
No 399
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.09 E-value=0.0005 Score=67.06 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=30.5
Q ss_pred HHHHHHHccCCCEEEEeCCCCCCCHHHHHHHHHHHhh
Q 048654 329 ISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCR 365 (723)
Q Consensus 329 vaLArAL~~~P~lLLLDEPT~~LD~~~~~~L~~~L~~ 365 (723)
...|++|+.+|.++++| |++||..++..+++.|.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45689999999999999 999999999888877754
No 400
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.03 E-value=0.0011 Score=70.26 Aligned_cols=27 Identities=15% Similarity=0.211 Sum_probs=24.7
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHh
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
-|++|+++.|.|++|+|||||+..|+.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999998874
No 401
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.01 E-value=0.00012 Score=83.58 Aligned_cols=31 Identities=39% Similarity=0.421 Sum_probs=28.1
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhCCCC
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWRKIP 217 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~ 217 (723)
.+.+|++++|+|+||||||||+++|+|...+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 4679999999999999999999999987654
No 402
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.01 E-value=0.00035 Score=69.20 Aligned_cols=31 Identities=42% Similarity=0.582 Sum_probs=24.9
Q ss_pred eeceEEEEecCcEEEEEcCCCCcHHHHHHHHH
Q 048654 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLA 544 (723)
Q Consensus 513 L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~ 544 (723)
+.+.++.+.+| +.+|+||||||||||+.+|.
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34556666654 89999999999999999885
No 403
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.01 E-value=0.00028 Score=71.28 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=26.2
Q ss_pred eEeeeEEEe---CCcEEEEECCCCccHHHHHHHHHhCCC
Q 048654 181 LKSTSVRIS---HGKRYGLVGPNGMGKSTLLKLLAWRKI 216 (723)
Q Consensus 181 L~~isl~i~---~Ge~~~LvG~NGsGKSTLlk~L~G~~~ 216 (723)
|.++||.+. .|.+++|.|++||||||+++.|+..+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 566677776 899999999999999999999997643
No 404
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.99 E-value=0.0001 Score=84.14 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=44.2
Q ss_pred EEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEEC
Q 048654 498 LIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRS 557 (723)
Q Consensus 498 ~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~ 557 (723)
++++...|.. ..++.++++++ +|+.++|+||||+|||||+++|++.+.+..|.|...
T Consensus 86 ~~~vk~~i~~--~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 86 LEKVKERILE--YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp CHHHHHHHHH--HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHHHH--HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 3444444532 23577888888 899999999999999999999999998877776543
No 405
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.97 E-value=0.00037 Score=69.41 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=22.2
Q ss_pred CcEEEEECCCCccHHHHHHHHHhC
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+.+++|+|++||||||++++|++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999974
No 406
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.92 E-value=0.00045 Score=66.35 Aligned_cols=26 Identities=31% Similarity=0.279 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+|.+++|+|++||||||++++|++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999999975
No 407
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.87 E-value=0.00021 Score=70.91 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=31.0
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcc
Q 048654 518 VGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEG 552 (723)
Q Consensus 518 l~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G 552 (723)
+.+.+|.+++|+|++||||||+.+.|++.+.|..|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 34678999999999999999999999998887667
No 408
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.86 E-value=0.00044 Score=67.00 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=26.3
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 183 STSVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 183 ~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++|++...|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999853
No 409
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.83 E-value=8.1e-05 Score=80.60 Aligned_cols=46 Identities=26% Similarity=0.385 Sum_probs=37.9
Q ss_pred ceEEEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCCC
Q 048654 165 DITIDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKI 216 (723)
Q Consensus 165 ~I~l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~ 216 (723)
.+.+.|++..|+.+.++++++|+| +|||+||+|||||++.|.|...
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 578889988898889999999987 9999999999999999987643
No 410
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.81 E-value=0.00051 Score=67.30 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+++|+|+|||||||++++|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999984
No 411
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.80 E-value=0.00051 Score=67.32 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 048654 525 RVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~G 545 (723)
+++|+|+|||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 412
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.79 E-value=0.0068 Score=65.52 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=23.7
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHH
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~ 212 (723)
-|++|+++.|.|+.|+|||||+..|+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la 95 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIV 95 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHH
Confidence 37899999999999999999998776
No 413
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.76 E-value=0.004 Score=67.12 Aligned_cols=28 Identities=36% Similarity=0.539 Sum_probs=24.8
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+.+|.++.|.|++|+|||||...++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998877543
No 414
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.75 E-value=0.00042 Score=67.03 Aligned_cols=35 Identities=34% Similarity=0.398 Sum_probs=30.3
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceE
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I 554 (723)
..+|.++.|+|++||||||+.+.|++.+.+..|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 35789999999999999999999999887666655
No 415
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.73 E-value=0.00065 Score=65.79 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=26.4
Q ss_pred ceEEEEecCcEEEEEcCCCCcHHHHHHHHHcC
Q 048654 515 DVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 515 ~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
++|+....|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888889999999999999999999999875
No 416
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.71 E-value=0.00034 Score=68.44 Aligned_cols=42 Identities=26% Similarity=0.427 Sum_probs=30.5
Q ss_pred EEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHc
Q 048654 502 SFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 502 s~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~G 545 (723)
++.|++- ..+++++||..+.+ .++|+|++|+|||||++.+.+
T Consensus 6 ~~~~~~~-~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGF-SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp --------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHH-HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 4456543 34788999888777 578999999999999999987
No 417
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.71 E-value=0.00068 Score=66.72 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=25.1
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
...+|.+++|+||+|||||||++.|+...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999999998653
No 418
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.71 E-value=0.00086 Score=63.93 Aligned_cols=26 Identities=54% Similarity=0.726 Sum_probs=23.4
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+|..++|+|++|+|||||++.|+|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999999864
No 419
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.71 E-value=0.0031 Score=65.77 Aligned_cols=31 Identities=35% Similarity=0.534 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCcceE
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I 554 (723)
..+.|+||+|+|||||+++|++.+.+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 4789999999999999999999887665543
No 420
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.70 E-value=5.6e-05 Score=86.36 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=39.9
Q ss_pred EEeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 168 IDNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 168 l~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
++++.+.|....++.++++++ +|++++|+||||+|||||+++|++..
T Consensus 86 ~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 86 LEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 455666666667888889888 89999999999999999999999864
No 421
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.70 E-value=0.001 Score=64.41 Aligned_cols=33 Identities=30% Similarity=0.524 Sum_probs=20.7
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHc
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~G 545 (723)
+++++++..+.. .++|+|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 578899988776 789999999999999999997
No 422
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.68 E-value=0.00022 Score=75.08 Aligned_cols=52 Identities=23% Similarity=0.111 Sum_probs=40.7
Q ss_pred EEEEEcCCCcccceec-eEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 500 EVSFSYPNREDFKLSD-VDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 500 ~ls~~y~~~~~~~L~~-isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
++...|++.. .+ ++|+++ |.+++|+|+||+||||++..|++.+.+..|+|.+
T Consensus 79 ~l~~~~~~~~----~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l 131 (297)
T 1j8m_F 79 ELSNLFGGDK----EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGL 131 (297)
T ss_dssp HHHHHTTCSC----CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHhcccc----ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 3444565321 45 777766 9999999999999999999999999887777754
No 423
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.67 E-value=0.00083 Score=64.05 Aligned_cols=27 Identities=44% Similarity=0.599 Sum_probs=23.2
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
.+|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999864
No 424
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.66 E-value=0.0061 Score=67.61 Aligned_cols=127 Identities=17% Similarity=0.250 Sum_probs=73.9
Q ss_pred ceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECCceeEEEEccccccccCccccHHHHHHhhCCCCC
Q 048654 512 KLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQKLRIGRYSQHFVDLLTMEETPVSYLLRLHPDQE 591 (723)
Q Consensus 512 ~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~~~~ig~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 591 (723)
.|+.+.--+.+|+++.|.|++|+|||||+..|+.......| ..+.|+.-. ...
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-------~~vl~~slE--------~~~------------ 241 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG-------VGVGIYSLE--------MPA------------ 241 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------CCEEEEESS--------SCH------------
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-------CeEEEEECC--------CCH------------
Confidence 35555556899999999999999999999888764332112 123333211 111
Q ss_pred CCcHHHHHHHHH-HhCCCCCCCCcCCCCCCCHHHHHHHHHHHHHccCCCeEEeccCCCCCCHHHHHHHH-HHHHHcCceE
Q 048654 592 GLSKQEAVRAKL-GKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALA-DALDEFTGGV 669 (723)
Q Consensus 592 ~~~~~~~~~~~L-~~~gl~~~~~~~~i~~LSGGqkqRv~lAral~~~p~lLlLDEPT~~LD~~s~~~l~-~~L~~~~~tV 669 (723)
.+....++ ...++..... +. +.||..+.+|+.-|...+...++++.|+|. +++....... .+..+.+..+
T Consensus 242 ----~~l~~R~~~~~~~i~~~~l-~~-g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~~~~~l 313 (444)
T 2q6t_A 242 ----AQLTLRMMCSEARIDMNRV-RL-GQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQNQVGL 313 (444)
T ss_dssp ----HHHHHHHHHHHTTCCTTTC-CG-GGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHHSCCCE
T ss_pred ----HHHHHHHHHHHcCCCHHHH-hC-CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHcCCCE
Confidence 11111221 2234432211 12 468999999988887777778888888764 4444443333 3333444456
Q ss_pred EEEe
Q 048654 670 VLVS 673 (723)
Q Consensus 670 IivS 673 (723)
|||-
T Consensus 314 IvID 317 (444)
T 2q6t_A 314 IIID 317 (444)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 6653
No 425
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.66 E-value=0.00046 Score=77.72 Aligned_cols=56 Identities=29% Similarity=0.408 Sum_probs=42.5
Q ss_pred EEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEECC
Q 048654 497 QLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRRSQ 558 (723)
Q Consensus 497 ~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~~~ 558 (723)
+++++...|.+ ..++.++++.+.+| +.|+||||+|||||+++|++... .+.|.+++
T Consensus 42 ~l~~lv~~l~~--~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g 97 (499)
T 2dhr_A 42 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 97 (499)
T ss_dssp HHHHHHHHHHC--GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred HHHHHHHHhhc--hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEeh
Confidence 34445444543 23688999999998 89999999999999999999875 56665543
No 426
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.64 E-value=0.00068 Score=66.76 Aligned_cols=30 Identities=23% Similarity=0.500 Sum_probs=26.4
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
...+|.+++|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999998764
No 427
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.63 E-value=0.00097 Score=72.76 Aligned_cols=40 Identities=30% Similarity=0.529 Sum_probs=32.0
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcC-----------CCCCcceEEECC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGD-----------LSPTEGEVRRSQ 558 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl-----------~~p~~G~I~~~~ 558 (723)
.+..|..++|+|+||+|||||++.|+|. +.|..|.|.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3467889999999999999999999998 567778776543
No 428
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.62 E-value=0.00018 Score=77.91 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=35.9
Q ss_pred CeEEEEEEEEEcCCCcccceeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCCCCcce
Q 048654 494 PLLQLIEVSFSYPNREDFKLSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGE 553 (723)
Q Consensus 494 ~~l~~~~ls~~y~~~~~~~L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~ 553 (723)
..+.+.+++..|+. ..++++++|+| +|+|++|+|||||++.|+|...+..|.
T Consensus 16 ~~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 16 GYVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -----CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred ceEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 35778888888864 34788999876 999999999999999999876554443
No 429
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.61 E-value=0.00078 Score=72.45 Aligned_cols=29 Identities=34% Similarity=0.492 Sum_probs=24.9
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHhCCCC
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAWRKIP 217 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~ 217 (723)
..+.+++|+|++|||||||++.|+|...+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~ 100 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTE 100 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhh
Confidence 35678999999999999999999986443
No 430
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.60 E-value=0.0046 Score=68.57 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=38.8
Q ss_pred CCCChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHH-HHHHHHhhcCcEEEEEeC
Q 048654 319 KSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVL-WLEEYLCRWKKTLVVVSH 375 (723)
Q Consensus 319 ~~LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~-~L~~~L~~~~~TVIivsH 375 (723)
..||..+.+|+.-|...+...++++.|+|. +++.... .+..+.++.+..+|||.+
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 469999999999888888888899999764 4444433 333444455667777764
No 431
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.60 E-value=0.0041 Score=65.60 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhC
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+..+.|.||+|+|||||++.|++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3467899999999999999999864
No 432
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.56 E-value=0.0016 Score=72.22 Aligned_cols=36 Identities=39% Similarity=0.530 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC------------CCcceEEECCc
Q 048654 524 TRVAIVGPNGAGKSTLLNLLAGDLS------------PTEGEVRRSQK 559 (723)
Q Consensus 524 e~vaIvGpNGsGKSTLlk~L~Gl~~------------p~~G~I~~~~~ 559 (723)
-.++|+|+||+|||||++.|+|... +..|.+.+.+.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 3699999999999999999999854 55677776654
No 433
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.56 E-value=0.00035 Score=78.77 Aligned_cols=45 Identities=27% Similarity=0.404 Sum_probs=36.7
Q ss_pred EeEEEEeCCeeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 169 DNFSVAARGKELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 169 ~nls~~y~~~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
+++...|....+++++++.+++| +.|+||||+|||||+++|++..
T Consensus 44 ~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 44 KEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp HHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHT
T ss_pred HHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHh
Confidence 34444455556788899999999 9999999999999999999864
No 434
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.52 E-value=0.0016 Score=61.35 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
.++|+|++|+|||||++.|+|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999653
No 435
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.51 E-value=0.0012 Score=63.92 Aligned_cols=35 Identities=31% Similarity=0.503 Sum_probs=21.2
Q ss_pred eeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 179 ELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 179 ~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+++++++..+.. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999998887 7799999999999999999974
No 436
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.51 E-value=0.00027 Score=75.45 Aligned_cols=42 Identities=24% Similarity=0.345 Sum_probs=37.0
Q ss_pred EeCCeeeeEeeeEEEeCCcE--EEEECCCCccHHHHHHHHHhCC
Q 048654 174 AARGKELLKSTSVRISHGKR--YGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 174 ~y~~~~vL~~isl~i~~Ge~--~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
.||...+++.++..|..|++ +.|.||+|+|||||+++|++..
T Consensus 27 ~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45667788889999999988 9999999999999999999753
No 437
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.46 E-value=0.00026 Score=69.29 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=31.4
Q ss_pred EEEeCC-eeeeEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 172 SVAARG-KELLKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 172 s~~y~~-~~vL~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
++.|++ ..+++++||..+.+ .++|+|++|+|||||++.+.+.
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 445655 36899999988887 5789999999999999999853
No 438
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.42 E-value=0.0015 Score=62.79 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLSPT 550 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~p~ 550 (723)
.++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 58999999999999999999975443
No 439
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.41 E-value=0.0016 Score=61.37 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHHhCC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
.++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999753
No 440
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.40 E-value=0.001 Score=69.99 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHHHHc--cCCCEEEEeCCCCCCCHHH-HHHHHHHHhh----cC--cEEEEEeCCHHHHHhhCCEEE
Q 048654 321 FSGGWRMRISLARALF--VQPTLLLLDEPTNHLDLRA-VLWLEEYLCR----WK--KTLVVVSHDRDFLNTVCTEII 388 (723)
Q Consensus 321 LSGGqrQRvaLArAL~--~~P~lLLLDEPT~~LD~~~-~~~L~~~L~~----~~--~TVIivsHdl~~l~~iad~Ii 388 (723)
+|+|++ .+++.+. ..|.||++ |.+|... ...+.+.+.+ ++ ..+.+++|+-.-+..++|.|.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 898886 5566666 78999999 8999765 4444444432 34 256677777666666666554
No 441
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.39 E-value=0.0014 Score=64.09 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.8
Q ss_pred CcEEEEECCCCccHHHHHHHHHhC
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
..+++|+|++|||||||.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 442
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.38 E-value=0.0088 Score=58.72 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=32.5
Q ss_pred cCCCeEEeccCCCCCCHHHHHHHHHHHHHcC--ceEEEEecCHHH
Q 048654 636 SKPHILLLDEPTNHLDMQSIDALADALDEFT--GGVVLVSHDSRL 678 (723)
Q Consensus 636 ~~p~lLlLDEPT~~LD~~s~~~l~~~L~~~~--~tVIivSHD~~~ 678 (723)
.+|.+|++||.-. ||......|...+.+.. ..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 4578999999765 88888888988887753 458888877653
No 443
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.37 E-value=0.0015 Score=62.68 Aligned_cols=25 Identities=36% Similarity=0.466 Sum_probs=22.3
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHh
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
..|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999999984
No 444
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.35 E-value=0.00051 Score=73.76 Aligned_cols=36 Identities=36% Similarity=0.445 Sum_probs=32.6
Q ss_pred ceeceEEEEecCcE--EEEEcCCCCcHHHHHHHHHcCC
Q 048654 512 KLSDVDVGIDMGTR--VAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 512 ~L~~isl~i~~Ge~--vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+++.+++.+.+|++ ++|+|++||||||+.++|++.+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 67788888999999 9999999999999999999864
No 445
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.35 E-value=0.00043 Score=74.29 Aligned_cols=36 Identities=36% Similarity=0.410 Sum_probs=32.0
Q ss_pred eeeEeeeEEEeCCcE--EEEECCCCccHHHHHHHHHhC
Q 048654 179 ELLKSTSVRISHGKR--YGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 179 ~vL~~isl~i~~Ge~--~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+++.+++.+.+|++ ++|+|++|||||||.++|++.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 367788888899998 999999999999999999964
No 446
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.34 E-value=0.0019 Score=62.38 Aligned_cols=28 Identities=36% Similarity=0.298 Sum_probs=24.8
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
...+|.+++|+|++||||||+++.|+..
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999999865
No 447
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.31 E-value=0.0016 Score=63.68 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
..+|+|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
No 448
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.28 E-value=0.0017 Score=64.29 Aligned_cols=30 Identities=33% Similarity=0.310 Sum_probs=26.1
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 186 VRISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 186 l~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
+.+.+|.+++|+|++||||||+++.|++.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999999998653
No 449
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.27 E-value=0.0022 Score=64.62 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.5
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHHh
Q 048654 188 ISHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 188 i~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
-.+|.+++|+|++||||||+.++|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999999999996
No 450
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.24 E-value=0.0033 Score=67.23 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.7
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
..+..+.|.||.|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999853
No 451
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.23 E-value=0.002 Score=61.92 Aligned_cols=25 Identities=48% Similarity=0.720 Sum_probs=22.3
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHc
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~G 545 (723)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999984
No 452
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.21 E-value=0.0024 Score=61.06 Aligned_cols=22 Identities=41% Similarity=0.801 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
No 453
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.20 E-value=0.0074 Score=62.12 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=23.6
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
..+.-+.|.||.|+|||||++.|+..+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 456679999999999999999998864
No 454
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.17 E-value=0.0024 Score=64.26 Aligned_cols=27 Identities=37% Similarity=0.529 Sum_probs=24.0
Q ss_pred EecCcEEEEEcCCCCcHHHHHHHHHcC
Q 048654 520 IDMGTRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 520 i~~Ge~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
-.+|.+++|+|++||||||+.++|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999999873
No 455
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.16 E-value=0.00044 Score=73.79 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=36.4
Q ss_pred cceeceEEEEecCcE--EEEEcCCCCcHHHHHHHHHcCCCCCcc
Q 048654 511 FKLSDVDVGIDMGTR--VAIVGPNGAGKSTLLNLLAGDLSPTEG 552 (723)
Q Consensus 511 ~~L~~isl~i~~Ge~--vaIvGpNGsGKSTLlk~L~Gl~~p~~G 552 (723)
.+++.++..|..|++ +.|.||+|+|||||+++|++.+.+..+
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 477888888999998 999999999999999999998765443
No 456
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.15 E-value=0.0027 Score=60.66 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
No 457
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.14 E-value=0.0017 Score=66.18 Aligned_cols=32 Identities=34% Similarity=0.523 Sum_probs=22.8
Q ss_pred eEeeeEEEeCCcEEEEECCCCccHHHHHHHHHhC
Q 048654 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 181 L~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+.++++.++.| +.|+||+|+|||||+++|++.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHH
Confidence 33444444555 899999999999999999975
No 458
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.06 E-value=0.0017 Score=62.87 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDLSPT 550 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~ 550 (723)
-.+++|+|++|||||||++.|.+.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 3589999999999999999999876543
No 459
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.03 E-value=0.0032 Score=59.32 Aligned_cols=22 Identities=32% Similarity=0.169 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999854
No 460
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.03 E-value=0.0024 Score=69.56 Aligned_cols=35 Identities=23% Similarity=0.134 Sum_probs=30.1
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCCcceEEE
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLSPTEGEVRR 556 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I~~ 556 (723)
.+..++|+|++|||||||++.|++...+..+.|.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 56688999999999999999999887777777754
No 461
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.02 E-value=0.003 Score=60.63 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999975
No 462
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.01 E-value=0.012 Score=62.11 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHH--c--cCCCEEEEeCCCCCCC-H--------------HHHH-------HHHHHHhhcCcEEEEEeCCH
Q 048654 324 GWRMRISLARAL--F--VQPTLLLLDEPTNHLD-L--------------RAVL-------WLEEYLCRWKKTLVVVSHDR 377 (723)
Q Consensus 324 GqrQRvaLArAL--~--~~P~lLLLDEPT~~LD-~--------------~~~~-------~L~~~L~~~~~TVIivsHdl 377 (723)
++++.+.++.+| + .+|+++|+|=-++-.- . ...+ .|..++++.+.+||+|-|-.
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~ 172 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence 566656777776 4 3699999998887641 0 0111 12334456688999999976
Q ss_pred H
Q 048654 378 D 378 (723)
Q Consensus 378 ~ 378 (723)
.
T Consensus 173 k 173 (333)
T 3io5_A 173 E 173 (333)
T ss_dssp -
T ss_pred e
Confidence 5
No 463
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.99 E-value=0.0023 Score=65.15 Aligned_cols=34 Identities=35% Similarity=0.619 Sum_probs=23.9
Q ss_pred eeceEEEEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 513 LSDVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 513 L~~isl~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
+.++++.+..| +.|+||+|+|||||+++|++.+.
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 34444444444 88999999999999999998653
No 464
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.99 E-value=0.0014 Score=68.88 Aligned_cols=58 Identities=29% Similarity=0.240 Sum_probs=40.9
Q ss_pred EeEEEEeCCeeeeEe-eeEEEeCCcEEEEECCCCccHHHHHHHHHhCCCCCCCcEEEEEeeeee
Q 048654 169 DNFSVAARGKELLKS-TSVRISHGKRYGLVGPNGMGKSTLLKLLAWRKIPVPKNIDVLLVEQEV 231 (723)
Q Consensus 169 ~nls~~y~~~~vL~~-isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~~~~~~~~~i~~~~q~~ 231 (723)
++++..|++.. .+ ++|++. |.+++++|+||+||||++..|++...+ ..+.+.+++.++
T Consensus 78 ~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D~ 136 (297)
T 1j8m_F 78 DELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred HHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecCC
Confidence 34555565443 45 778766 999999999999999999999976533 234556655443
No 465
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.98 E-value=0.0038 Score=59.44 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.9
Q ss_pred CcEEEEECCCCccHHHHHHHHHhC
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
|.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999999854
No 466
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.96 E-value=0.0038 Score=60.31 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=21.2
Q ss_pred cEEEEECCCCccHHHHHHHHHhC
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+++|+|++|||||||++.|.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 58999999999999999999875
No 467
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.89 E-value=0.0042 Score=61.48 Aligned_cols=25 Identities=32% Similarity=0.203 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhC
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.+-+++|+|++||||||++++|+.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l 27 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL 27 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc
Confidence 3568999999999999999999973
No 468
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.88 E-value=0.0077 Score=64.30 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=24.1
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
..+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999987653
No 469
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.86 E-value=0.047 Score=60.29 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=25.0
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLSPT 550 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p~ 550 (723)
++.+++|+|++|+||||++..|+..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46799999999999999999999776643
No 470
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.82 E-value=0.0048 Score=59.15 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=21.4
Q ss_pred CcEEEEECCCCccHHHHHHHHHh
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
|.+++|+|++||||||+.+.|+-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999999984
No 471
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.82 E-value=0.015 Score=58.41 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=39.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhcCcEEEEEeCC----------HHHHHhhCCEEEEEe
Q 048654 338 QPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHD----------RDFLNTVCTEIIHLH 391 (723)
Q Consensus 338 ~P~lLLLDEPT~~LD~~~~~~L~~~L~~~~~TVIivsHd----------l~~l~~iad~Ii~L~ 391 (723)
+|+++++||--. |+......+. .|...+.+||++-|+ ...+..+||.|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l~-~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVAN-ILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHHH-HHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHHH-HHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 8776555554 445558899999993 345666999999986
No 472
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.82 E-value=0.0044 Score=58.33 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
No 473
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.77 E-value=0.0021 Score=65.19 Aligned_cols=25 Identities=40% Similarity=0.466 Sum_probs=21.5
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGD 546 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl 546 (723)
..-+++|+||+||||||+.+.|+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3458999999999999999999854
No 474
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.75 E-value=0.0057 Score=58.18 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.7
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
.|.++.|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999997654
No 475
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.74 E-value=0.0049 Score=57.85 Aligned_cols=20 Identities=40% Similarity=0.463 Sum_probs=18.8
Q ss_pred EEEEECCCCccHHHHHHHHH
Q 048654 193 RYGLVGPNGMGKSTLLKLLA 212 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~ 212 (723)
+++|+|++||||||+.+.|.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L~ 22 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLLK 22 (179)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999994
No 476
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.73 E-value=0.008 Score=66.50 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=22.0
Q ss_pred cEEEEECCCCccHHHHHHHHHhCC
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
-.++|||+||+|||||++.|+|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 379999999999999999999864
No 477
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.69 E-value=0.0053 Score=62.17 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=21.4
Q ss_pred CcEEEEECCCCccHHHHHHHHHhC
Q 048654 191 GKRYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 191 Ge~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
.-+++|+||+|||||||.+.|+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999843
No 478
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.68 E-value=0.069 Score=58.96 Aligned_cols=26 Identities=31% Similarity=0.257 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
++.+++++|++|+||||++..|+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998543
No 479
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.68 E-value=0.0047 Score=59.46 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=22.5
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHh
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
..+.++.|+|++||||||+.+.|+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999999999984
No 480
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.67 E-value=0.0053 Score=62.76 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+++|+||||||||||.+.|++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 6899999999999999999864
No 481
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.64 E-value=0.0022 Score=65.45 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=26.3
Q ss_pred EEecCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 048654 519 GIDMGTRVAIVGPNGAGKSTLLNLLAGDLS 548 (723)
Q Consensus 519 ~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~ 548 (723)
....+.++.|+|++||||||+.+.|+..+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 456788999999999999999999998764
No 482
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.64 E-value=0.0049 Score=58.75 Aligned_cols=22 Identities=41% Similarity=0.435 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+++|+|++||||||+.+.|+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999853
No 483
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.61 E-value=0.006 Score=59.15 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHHhC
Q 048654 193 RYGLVGPNGMGKSTLLKLLAWR 214 (723)
Q Consensus 193 ~~~LvG~NGsGKSTLlk~L~G~ 214 (723)
+++|+|+.||||||+.+.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999963
No 484
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.61 E-value=0.0091 Score=64.37 Aligned_cols=36 Identities=39% Similarity=0.587 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHc-----------CCCCCcceEEECC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAG-----------DLSPTEGEVRRSQ 558 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~G-----------l~~p~~G~I~~~~ 558 (723)
|-.++|+|.+|+|||||++.|+| .+.|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56799999999999999999998 3456677776543
No 485
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.61 E-value=0.0035 Score=74.85 Aligned_cols=32 Identities=22% Similarity=0.517 Sum_probs=28.8
Q ss_pred EEEecCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 048654 518 VGIDMGTRVAIVGPNGAGKSTLLNLLAGDLSP 549 (723)
Q Consensus 518 l~i~~Ge~vaIvGpNGsGKSTLlk~L~Gl~~p 549 (723)
|.+.+|+.+.|+||||||||||+++|+|.+..
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 45789999999999999999999999998754
No 486
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.60 E-value=0.013 Score=64.93 Aligned_cols=53 Identities=9% Similarity=0.098 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHHHccCCCEEEEeCCCCCCCHHHHHHH-HHHHhhcCcE--EEEEeC
Q 048654 321 FSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWL-EEYLCRWKKT--LVVVSH 375 (723)
Q Consensus 321 LSGGqrQRvaLArAL~~~P~lLLLDEPT~~LD~~~~~~L-~~~L~~~~~T--VIivsH 375 (723)
|+..+.+|+.-|...+.+.+|+|.|+|. +++...... ..+.++.+.. +|||.+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 6777788888888888888999999874 666655433 3333444656 787765
No 487
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.58 E-value=0.0068 Score=58.08 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 523 GTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 523 Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
|-++.|.|+.||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999997643
No 488
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.58 E-value=0.09 Score=59.01 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=26.6
Q ss_pred eEeeeEEEeCCcEEEEECCCCccHHHHHHHHHh
Q 048654 181 LKSTSVRISHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 181 L~~isl~i~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
|+.+---+.+|+.+.|.|++|+|||||+--|+-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 444333489999999999999999999877763
No 489
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.54 E-value=0.0045 Score=63.10 Aligned_cols=29 Identities=21% Similarity=0.178 Sum_probs=25.1
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHHhCC
Q 048654 187 RISHGKRYGLVGPNGMGKSTLLKLLAWRK 215 (723)
Q Consensus 187 ~i~~Ge~~~LvG~NGsGKSTLlk~L~G~~ 215 (723)
....+.++.|+|++||||||+.+.|+...
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35667899999999999999999998753
No 490
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.54 E-value=0.0062 Score=60.23 Aligned_cols=24 Identities=42% Similarity=0.531 Sum_probs=21.8
Q ss_pred cCcEEEEEcCCCCcHHHHHHHHHc
Q 048654 522 MGTRVAIVGPNGAGKSTLLNLLAG 545 (723)
Q Consensus 522 ~Ge~vaIvGpNGsGKSTLlk~L~G 545 (723)
.+-+|+|+|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999997
No 491
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.51 E-value=0.006 Score=58.67 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.3
Q ss_pred ecCcEEEEEcCCCCcHHHHHHHHHcCC
Q 048654 521 DMGTRVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 521 ~~Ge~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
.++.+|.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999997643
No 492
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.50 E-value=0.0076 Score=57.75 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHHh
Q 048654 190 HGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 190 ~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
.+.++.|+|+.||||||+.+.|+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999999984
No 493
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.50 E-value=0.0068 Score=56.84 Aligned_cols=19 Identities=42% Similarity=0.639 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 048654 525 RVAIVGPNGAGKSTLLNLL 543 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L 543 (723)
+++|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 494
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.49 E-value=0.0063 Score=57.99 Aligned_cols=23 Identities=48% Similarity=0.671 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
No 495
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.47 E-value=0.0073 Score=57.25 Aligned_cols=22 Identities=32% Similarity=0.235 Sum_probs=20.2
Q ss_pred cEEEEECCCCccHHHHHHHHHh
Q 048654 192 KRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 192 e~~~LvG~NGsGKSTLlk~L~G 213 (723)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999985
No 496
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.47 E-value=0.0064 Score=62.11 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDL 547 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~ 547 (723)
+++|+||||||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 497
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.47 E-value=0.0066 Score=62.47 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=28.1
Q ss_pred CCCCCCHHHHHHHHHHHHHc----CceEEEEecCHHHHHHhcC
Q 048654 646 PTNHLDMQSIDALADALDEF----TGGVVLVSHDSRLISRVCD 684 (723)
Q Consensus 646 PT~~LD~~s~~~l~~~L~~~----~~tVIivSHD~~~~~~~~d 684 (723)
||++++......+.+.|.+. ..++.+.+|..+.+...++
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~ 186 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIK 186 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHH
Confidence 89999988888888877654 1334667777777777663
No 498
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.46 E-value=0.0069 Score=57.90 Aligned_cols=25 Identities=40% Similarity=0.292 Sum_probs=22.3
Q ss_pred eCCcEEEEECCCCccHHHHHHHHHh
Q 048654 189 SHGKRYGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 189 ~~Ge~~~LvG~NGsGKSTLlk~L~G 213 (723)
..+.++.|+|++||||||+.+.|+.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence 3577899999999999999999983
No 499
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.44 E-value=0.0021 Score=63.15 Aligned_cols=30 Identities=40% Similarity=0.601 Sum_probs=24.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCcceE
Q 048654 525 RVAIVGPNGAGKSTLLNLLAGDLSPTEGEV 554 (723)
Q Consensus 525 ~vaIvGpNGsGKSTLlk~L~Gl~~p~~G~I 554 (723)
+|+|+|++|||||||++.|+..+.+....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998776433333
No 500
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.43 E-value=0.0071 Score=59.04 Aligned_cols=20 Identities=55% Similarity=0.677 Sum_probs=18.3
Q ss_pred EEEECCCCccHHHHHHHHHh
Q 048654 194 YGLVGPNGMGKSTLLKLLAW 213 (723)
Q Consensus 194 ~~LvG~NGsGKSTLlk~L~G 213 (723)
+.|+||||||||||++.|..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999874
Done!