BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048655
         (288 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
 pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
 pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
 pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
          Length = 797

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 18/132 (13%)

Query: 67  YFLRPLWESPPKPFIKIPHYYHENVTMERLCKLHGWGIRESPRRVFDAVLFSTE-----E 121
           Y +  L ++  K F    +Y H  V  +R C+L     +E   R+  A+   TE      
Sbjct: 495 YSVDTLSQNSKKDF-GTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYN 553

Query: 122 DILTI----RWKELYPFITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGG 177
           D L I    R  +   ++T+F     N  +T L + L       KF+  EP L   +   
Sbjct: 554 DALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHL-----TAKFQEKEPEL---IALS 605

Query: 178 RFKKGENPFVEE 189
           + +  ENP +EE
Sbjct: 606 KDETNENPKLEE 617


>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
 pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
           Dsrna And Atp Transition State Analogue
 pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
           Dsrna And Atp Transition State Analogue
          Length = 556

 Score = 29.6 bits (65), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 18/132 (13%)

Query: 67  YFLRPLWESPPKPFIKIPHYYHENVTMERLCKLHGWGIRESPRRVFDAVLFSTE-----E 121
           Y +  L ++  K F    +Y H  V  +R C+L     +E   R+  A+   TE      
Sbjct: 254 YSVDTLSQNSKKDF-GTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYN 312

Query: 122 DILTI----RWKELYPFITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGG 177
           D L I    R  +   ++T+F     N  +T L + L       KF+  EP L   +   
Sbjct: 313 DALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHL-----TAKFQEKEPEL---IALS 364

Query: 178 RFKKGENPFVEE 189
           + +  ENP +EE
Sbjct: 365 KDETNENPKLEE 376


>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
 pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
          Length = 936

 Score = 29.3 bits (64), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 17/114 (14%)

Query: 85  HYYHENVTMERLCKLHGWGIRESPRRVFDAVLFSTE-----EDILTI----RWKELYPFI 135
           +Y H  V  +R C+L     +E   R+  A+   TE      D L I    R  +   ++
Sbjct: 512 NYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYL 571

Query: 136 TQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPFVEE 189
           T+F     N  +T L + L       KF+  EP L   +   + +  ENP +EE
Sbjct: 572 TEFFTNVKNGPYTELEQHL-----TAKFQEKEPEL---IALSKDETNENPKLEE 617


>pdb|3I0O|A Chain A, Crystal Structure Of Spectinomycin Phosphotransferase,
           Aph(9)-Ia, In Complex With Adp And Spectinomcyin
 pdb|3I0Q|A Chain A, Crystal Structure Of The Amp-Bound Complex Of
           Spectinomycin Phosphotransferase, Aph(9)-Ia
 pdb|3I1A|A Chain A, Crystal Structure Of Apo Spectinomycin Phosphotransferase,
           Aph(9)-Ia
 pdb|3I1A|B Chain B, Crystal Structure Of Apo Spectinomycin Phosphotransferase,
           Aph(9)-Ia
 pdb|3Q2M|A Chain A, Crystal Structure Of Spectinomycin Phosphotransferase,
           Aph(9)-Ia, Protein Kinase Inhibitor Cki-7 Complex
          Length = 339

 Score = 28.1 bits (61), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 80  FIKIPHYYHENVTMERLCKLHGWGIRES--PRRVFDAVLFSTEEDILTIRWKELYPFI 135
           FIK+ + YH+ + +  +  LH  GI+E   P    +A LF   +    I     YPFI
Sbjct: 50  FIKLKYGYHDEINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIA----YPFI 103


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.141    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,751,290
Number of Sequences: 62578
Number of extensions: 354519
Number of successful extensions: 924
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 923
Number of HSP's gapped (non-prelim): 6
length of query: 288
length of database: 14,973,337
effective HSP length: 98
effective length of query: 190
effective length of database: 8,840,693
effective search space: 1679731670
effective search space used: 1679731670
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)