Query 048655
Match_columns 288
No_of_seqs 157 out of 193
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 11:42:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04724 Glyco_transf_17: Glyc 100.0 2.5E-87 5.3E-92 642.3 21.1 257 28-288 2-259 (356)
2 cd02511 Beta4Glucosyltransfera 95.7 0.36 7.7E-06 42.7 13.5 90 114-230 5-94 (229)
3 PF13704 Glyco_tranf_2_4: Glyc 93.0 0.71 1.5E-05 35.5 7.9 84 119-222 2-86 (97)
4 TIGR01556 rhamnosyltran L-rham 85.6 7.6 0.00016 35.1 9.7 95 115-229 1-95 (281)
5 cd02526 GT2_RfbF_like RfbF is 85.1 10 0.00022 32.7 9.8 93 115-228 4-96 (237)
6 cd04186 GT_2_like_c Subfamily 80.5 16 0.00035 28.9 8.7 103 115-241 3-109 (166)
7 PF00535 Glycos_transf_2: Glyc 77.3 14 0.0003 28.9 7.3 93 116-229 5-100 (169)
8 cd06437 CESA_CaSu_A2 Cellulose 73.7 56 0.0012 28.3 10.8 104 115-236 7-116 (232)
9 cd06421 CESA_CelA_like CESA_Ce 71.4 20 0.00043 30.6 7.3 32 196-230 76-107 (234)
10 cd06435 CESA_NdvC_like NdvC_li 70.6 40 0.00087 29.1 9.2 97 117-229 7-106 (236)
11 cd00761 Glyco_tranf_GTA_type G 70.5 43 0.00094 25.2 8.6 93 115-228 3-98 (156)
12 cd06436 GlcNAc-1-P_transferase 70.3 67 0.0015 27.3 13.6 119 115-246 3-128 (191)
13 cd06438 EpsO_like EpsO protein 70.1 52 0.0011 27.5 9.5 24 206-229 80-103 (183)
14 cd02522 GT_2_like_a GT_2_like_ 68.2 73 0.0016 26.9 11.1 88 117-232 7-97 (221)
15 cd04187 DPM1_like_bac Bacteria 67.7 50 0.0011 27.2 8.9 95 116-231 4-104 (181)
16 cd06434 GT2_HAS Hyaluronan syn 67.4 69 0.0015 27.4 9.9 37 193-232 66-103 (235)
17 TIGR03595 Obg_CgtA_exten Obg f 65.7 5 0.00011 30.5 2.2 21 196-216 45-65 (69)
18 cd06442 DPM1_like DPM1_like re 62.6 95 0.0021 26.3 9.8 94 115-229 3-100 (224)
19 TIGR03469 HonB hopene-associat 61.4 58 0.0013 31.5 9.2 105 111-229 42-155 (384)
20 PF13641 Glyco_tranf_2_3: Glyc 59.2 1.1E+02 0.0024 26.0 10.1 35 194-231 76-111 (228)
21 cd04185 GT_2_like_b Subfamily 57.6 1.1E+02 0.0025 25.5 10.3 95 119-232 7-104 (202)
22 PRK05454 glucosyltransferase M 57.1 54 0.0012 35.1 8.8 34 195-229 209-242 (691)
23 cd06439 CESA_like_1 CESA_like_ 56.5 1.3E+02 0.0029 26.0 10.8 99 108-229 28-131 (251)
24 PF09269 DUF1967: Domain of un 54.9 8.5 0.00018 29.2 1.8 21 196-216 45-65 (69)
25 cd04179 DPM_DPG-synthase_like 53.2 1.2E+02 0.0027 24.6 9.2 25 207-231 79-103 (185)
26 PRK14583 hmsR N-glycosyltransf 51.3 81 0.0017 31.2 8.5 32 195-229 146-177 (444)
27 cd04184 GT2_RfbC_Mx_like Myxoc 51.3 1.4E+02 0.0031 24.7 9.5 93 117-229 10-105 (202)
28 PRK11204 N-glycosyltransferase 51.1 1.3E+02 0.0028 29.0 9.7 33 194-229 124-156 (420)
29 PF12661 hEGF: Human growth fa 50.1 8.3 0.00018 20.6 0.7 12 66-77 1-12 (13)
30 cd02520 Glucosylceramide_synth 48.2 1.1E+02 0.0023 26.0 7.7 35 194-231 76-110 (196)
31 cd02525 Succinoglycan_BP_ExoA 48.1 1.7E+02 0.0038 24.9 9.1 23 207-229 81-103 (249)
32 cd04192 GT_2_like_e Subfamily 47.8 1.7E+02 0.0036 24.6 9.8 34 194-230 72-105 (229)
33 COG1215 Glycosyltransferases, 45.9 30 0.00064 33.0 4.3 34 193-229 126-159 (439)
34 PTZ00260 dolichyl-phosphate be 45.1 93 0.002 29.8 7.6 33 194-229 152-184 (333)
35 cd02510 pp-GalNAc-T pp-GalNAc- 43.6 1.9E+02 0.004 26.5 9.1 94 117-229 6-105 (299)
36 PRK10714 undecaprenyl phosphat 43.1 2E+02 0.0043 27.4 9.4 97 111-228 8-111 (325)
37 cd06423 CESA_like CESA_like is 40.7 1.7E+02 0.0036 22.5 12.0 31 207-237 78-109 (180)
38 TIGR03472 HpnI hopanoid biosyn 40.3 2.2E+02 0.0049 27.3 9.4 35 194-231 116-150 (373)
39 PRK13915 putative glucosyl-3-p 38.6 2.9E+02 0.0063 26.2 9.8 31 195-228 106-137 (306)
40 cd06433 GT_2_WfgS_like WfgS an 36.1 2.3E+02 0.0051 22.9 8.5 22 207-228 75-96 (202)
41 PRK14716 bacteriophage N4 adso 35.6 2.1E+02 0.0045 29.6 8.8 23 208-230 159-181 (504)
42 KOG0415 Predicted peptidyl pro 35.4 30 0.00064 34.9 2.6 69 206-286 8-100 (479)
43 cd04190 Chitin_synth_C C-termi 34.1 1.9E+02 0.0041 25.7 7.4 25 205-229 71-95 (244)
44 PF13506 Glyco_transf_21: Glyc 30.7 75 0.0016 27.6 4.1 32 196-229 22-53 (175)
45 PF14552 Tautomerase_2: Tautom 30.5 73 0.0016 25.0 3.6 39 168-213 27-70 (82)
46 PRK10063 putative glycosyl tra 29.8 4E+02 0.0088 24.1 8.9 34 195-231 73-106 (248)
47 PLN02726 dolichyl-phosphate be 29.5 3.9E+02 0.0085 23.5 10.4 31 195-228 84-114 (243)
48 cd04188 DPG_synthase DPG_synth 29.2 3.5E+02 0.0077 22.9 9.2 47 195-244 73-120 (211)
49 COG0420 SbcD DNA repair exonuc 28.9 1.4E+02 0.0029 29.0 5.9 59 169-227 2-63 (390)
50 cd04194 GT8_A4GalT_like A4GalT 28.5 1.6E+02 0.0034 26.3 5.9 54 166-221 55-117 (248)
51 PRK10718 RpoE-regulated lipopr 27.3 44 0.00095 30.6 2.1 15 63-77 156-170 (191)
52 PF10111 Glyco_tranf_2_2: Glyc 25.4 1.1E+02 0.0025 28.1 4.6 25 206-230 87-111 (281)
53 TIGR03111 glyc2_xrt_Gpos1 puta 22.9 1.3E+02 0.0027 29.9 4.6 32 195-229 122-153 (439)
54 cd00899 b4GalT Beta-4-Galactos 22.4 1E+02 0.0022 28.6 3.6 34 207-244 66-99 (219)
55 PF04800 ETC_C1_NDUFA4: ETC co 21.8 40 0.00087 27.8 0.7 33 72-104 39-72 (101)
56 cd04191 Glucan_BSP_ModH Glucan 20.6 97 0.0021 28.6 3.1 24 206-229 94-117 (254)
No 1
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=100.00 E-value=2.5e-87 Score=642.31 Aligned_cols=257 Identities=55% Similarity=1.073 Sum_probs=248.1
Q ss_pred ccccceeeeecCchhHHHHHHHHhhhheeeeEeeceeEeeecCCCCCCCCCCCCCcceEeccCccHHhHHHhcCccccCC
Q 048655 28 TMSRLRCMLRGFDLKTLFFVFVFIPVFIFGIYLHGQKISYFLRPLWESPPKPFIKIPHYYHENVTMERLCKLHGWGIRES 107 (288)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~W~~p~~p~~~iP~~y~~~~~~~~~c~~hgw~~r~~ 107 (288)
+|||++|++|++ ++++++++|+|+++++.++++++|+|||+|||||+|||+|||||+++.+|+++|++|||++|++
T Consensus 2 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~rp~w~~~~~~~~~ip~~~~~~~~~~~~~~~~~~~~R~~ 77 (356)
T PF04724_consen 2 SMSRRRCILRGL----FLFLFVLLPLCVIGVYQHGQSISCFCRPGWHGPPDPFCGIPHYYWESVSMSNLCQLHGWKPRKT 77 (356)
T ss_pred cchhHHHHHHHH----HHHHHHHHHHHhheeeecCceeEEeccCccCCCCCCCCCCCcceeecchhhhcccccCCCcCCC
Confidence 688999999986 6779999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhcccccEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCC-Cch
Q 048655 108 PRRVFDAVLFSTEEDILTIRWKELYPFITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGE-NPF 186 (288)
Q Consensus 108 pRkIyD~flfs~ElDlLEIRL~EL~dvVD~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~-~~w 186 (288)
||||||||+||+|+|||||||+||+|+||+|||||||.||||.||||+|.+|+++|+++++||+|+++++.+..+. ++|
T Consensus 78 pRrV~D~~~f~~ElDlLeiRl~eL~~vVD~FVIvEs~~Tf~G~~KpL~f~~~~~~f~~~~~KIiy~~l~~~~~~g~~~~w 157 (356)
T PF04724_consen 78 PRRVYDCFLFNNELDLLEIRLNELYDVVDYFVIVESNRTFTGKPKPLYFAENKERFAFFHDKIIYVTLDDPPEKGRKDPW 157 (356)
T ss_pred CCeEEEEEEeCChHHHHHHHHHHhhCcceEEEEEEECCCcCCCCCCccHHHHHHHHHhhhcceEEEEecCcCCCCCCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998766554 999
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHHhcCCCCcceEEEeeeeeeeEEeeeCCCceeeeEEEee
Q 048655 187 VEEAYQRVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRWCDDIPSILHLQLRNYLYSFEYFVDNNSWRASVHQYK 266 (288)
Q Consensus 187 ~~E~~qRn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr~cdg~p~~~~l~lr~y~YsF~~~~~~~~W~~~a~~y~ 266 (288)
++|++|||+|.++++.+|+++|||||+|||||||+|++|++||+|||+|++++|+||+|||||+|++++++|+++++.|.
T Consensus 158 ~~E~~qR~~l~~l~~~~~~~~dDliivSDvDEIP~p~~l~~Lr~cd~~p~~l~l~lr~y~YsF~~~~~~~~~r~~~~~~~ 237 (356)
T PF04724_consen 158 DRENYQRNALNGLLRLAGIQDDDLIIVSDVDEIPSPETLKFLRWCDGFPEPLHLRLRFYYYSFQFQHDGKSWRASVHTYS 237 (356)
T ss_pred HHHHHHHHHHHHHhhhcCCCCCCEEEEcCcccccCHHHHHHHHhcCCCCCeeEEEeeceEEEEEEecCCcchhhhhhhhc
Confidence 99999999998888889999999999999999999999999999999999999999999999999999999999988887
Q ss_pred cCccccccccccccccCCCCCC
Q 048655 267 RGKTRYAHYRQTDLLFSDAGWH 288 (288)
Q Consensus 267 ~~~t~y~~~r~~d~~ladaGWH 288 (288)
.+.+.|+|+|+++.+|+|||||
T Consensus 238 ~~~~~~~~~r~~~~il~daGWH 259 (356)
T PF04724_consen 238 QGMRRYRHSRQSDHILADAGWH 259 (356)
T ss_pred cccchhhhhcccCccccCCcee
Confidence 7888999999999999999999
No 2
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=95.73 E-value=0.36 Score=42.70 Aligned_cols=90 Identities=14% Similarity=0.060 Sum_probs=61.4
Q ss_pred EEecCChHHHHHHHHHHhcccccEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCCCchhhHHHHH
Q 048655 114 AVLFSTEEDILTIRWKELYPFITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPFVEEAYQR 193 (288)
Q Consensus 114 ~flfs~ElDlLEIRL~EL~dvVD~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~qR 193 (288)
+++..||-+.|+-=|+.|.+.+|.+|||.+..|= |. ... -+.+..|+++. . |..-..+|
T Consensus 5 ii~~~Ne~~~l~~~l~sl~~~~~eiivvD~gStD-~t---~~i------~~~~~~~v~~~--~---------~~g~~~~~ 63 (229)
T cd02511 5 VIITKNEERNIERCLESVKWAVDEIIVVDSGSTD-RT---VEI------AKEYGAKVYQR--W---------WDGFGAQR 63 (229)
T ss_pred EEEeCCcHHHHHHHHHHHhcccCEEEEEeCCCCc-cH---HHH------HHHcCCEEEEC--C---------CCChHHHH
Confidence 4455678888888899999999999999998771 11 111 11344555444 1 22345677
Q ss_pred HHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHHh
Q 048655 194 VALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRW 230 (288)
Q Consensus 194 n~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr~ 230 (288)
|..... ..+|.|++.|.||++.++.+..|..
T Consensus 64 n~~~~~------a~~d~vl~lDaD~~~~~~~~~~l~~ 94 (229)
T cd02511 64 NFALEL------ATNDWVLSLDADERLTPELADEILA 94 (229)
T ss_pred HHHHHh------CCCCEEEEEeCCcCcCHHHHHHHHH
Confidence 765432 3477999999999999999986653
No 3
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=92.97 E-value=0.71 Score=35.46 Aligned_cols=84 Identities=21% Similarity=0.281 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHhccc-ccEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCCCchhhHHHHHHHHH
Q 048655 119 TEEDILTIRWKELYPF-ITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPFVEEAYQRVALD 197 (288)
Q Consensus 119 ~ElDlLEIRL~EL~dv-VD~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~qRn~l~ 197 (288)
||-++|+-=|.-.... ||.|+|+.-+.|- |. .+..+.+ +++...... .+|..+..|+....
T Consensus 2 ne~~~L~~wl~~~~~lG~d~i~i~d~~s~D-~t---------~~~l~~~-~~v~i~~~~-------~~~~~~~~~~~~~~ 63 (97)
T PF13704_consen 2 NEADYLPEWLAHHLALGVDHIYIYDDGSTD-GT---------REILRAL-PGVGIIRWV-------DPYRDERRQRAWRN 63 (97)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEEECCCCc-cH---------HHHHHhC-CCcEEEEeC-------CCccchHHHHHHHH
Confidence 5777777666666677 9999999876661 11 1111222 334433332 23444555555444
Q ss_pred HHHHHcCCCCCcEEEeeCCCcCCCH
Q 048655 198 QLLRIAGIEDDDLLIMSDVDEIPSA 222 (288)
Q Consensus 198 ~~lr~~~~~~dDlIIvSDvDEIP~~ 222 (288)
.++.. ....|.|++.|+||+.-+
T Consensus 64 ~~~~~--~~~~dWvl~~D~DEfl~~ 86 (97)
T PF13704_consen 64 ALIER--AFDADWVLFLDADEFLVP 86 (97)
T ss_pred HHHHh--CCCCCEEEEEeeeEEEec
Confidence 44432 357899999999997543
No 4
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=85.63 E-value=7.6 Score=35.14 Aligned_cols=95 Identities=11% Similarity=-0.015 Sum_probs=60.2
Q ss_pred EecCChHHHHHHHHHHhcccccEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCCCchhhHHHHHH
Q 048655 115 VLFSTEEDILTIRWKELYPFITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPFVEEAYQRV 194 (288)
Q Consensus 115 flfs~ElDlLEIRL~EL~dvVD~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~qRn 194 (288)
|.||-|++.|+-=++-|...++..|||+.+.+=++..+.+ .+ -.++|.++..+... + =+..+|
T Consensus 1 Vtyn~~~~~l~~~l~sl~~q~~~iiVVDN~S~~~~~~~~~--------~~-~~~~i~~i~~~~N~-----G---~a~a~N 63 (281)
T TIGR01556 1 VTFNPDLEHLGELITSLPKQVDRIIAVDNSPHSDQPLKNA--------RL-RGQKIALIHLGDNQ-----G---IAGAQN 63 (281)
T ss_pred CccCccHHHHHHHHHHHHhcCCEEEEEECcCCCcHhHHHH--------hc-cCCCeEEEECCCCc-----c---hHHHHH
Confidence 3577788888888888988999999999776522111111 11 12577777654210 1 122334
Q ss_pred HHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 195 ALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 195 ~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
.-.+... -...|.|++-|-|.+|.++.+..|-
T Consensus 64 ~Gi~~a~---~~~~d~i~~lD~D~~~~~~~l~~l~ 95 (281)
T TIGR01556 64 QGLDASF---RRGVQGVLLLDQDSRPGNAFLAAQW 95 (281)
T ss_pred HHHHHHH---HCCCCEEEEECCCCCCCHHHHHHHH
Confidence 3322221 1467999999999999999998654
No 5
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=85.09 E-value=10 Score=32.66 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=59.4
Q ss_pred EecCChHHHHHHHHHHhcccccEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCCCchhhHHHHHH
Q 048655 115 VLFSTEEDILTIRWKELYPFITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPFVEEAYQRV 194 (288)
Q Consensus 115 flfs~ElDlLEIRL~EL~dvVD~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~qRn 194 (288)
..+|.|++.|+-=|..+...+..+|||+.+.+ +..... .++ -..++.++..+... + =+..||
T Consensus 4 ~~yn~~~~~l~~~l~sl~~q~~~iivvDn~s~----~~~~~~----~~~--~~~~i~~i~~~~n~-----G---~~~a~N 65 (237)
T cd02526 4 VTYNPDLSKLKELLAALAEQVDKVVVVDNSSG----NDIELR----LRL--NSEKIELIHLGENL-----G---IAKALN 65 (237)
T ss_pred EEecCCHHHHHHHHHHHhccCCEEEEEeCCCC----ccHHHH----hhc--cCCcEEEEECCCce-----e---hHHhhh
Confidence 35667768888888888888889999986654 111111 111 34566666543211 1 123455
Q ss_pred HHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHH
Q 048655 195 ALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLL 228 (288)
Q Consensus 195 ~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~L 228 (288)
...+..+ | ...|.|++.|.|.++.++.|..|
T Consensus 66 ~g~~~a~--~-~~~d~v~~lD~D~~~~~~~l~~l 96 (237)
T cd02526 66 IGIKAAL--E-NGADYVLLFDQDSVPPPDMVEKL 96 (237)
T ss_pred HHHHHHH--h-CCCCEEEEECCCCCcCHhHHHHH
Confidence 4444322 2 26899999999999999999988
No 6
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=80.53 E-value=16 Score=28.88 Aligned_cols=103 Identities=14% Similarity=0.107 Sum_probs=57.5
Q ss_pred EecCChHHHHHHHHHHhccc---ccEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCCCchhhHHH
Q 048655 115 VLFSTEEDILTIRWKELYPF---ITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPFVEEAY 191 (288)
Q Consensus 115 flfs~ElDlLEIRL~EL~dv---VD~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~ 191 (288)
+...||.+.|+--++.|... ....||+..+.+ +.. .+...+ +..++.++..+.. .+. ..
T Consensus 3 i~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~----~~~---~~~~~~---~~~~~~~~~~~~~-----~g~---~~ 64 (166)
T cd04186 3 IVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNAST----DGS---VELLRE---LFPEVRLIRNGEN-----LGF---GA 64 (166)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCC----chH---HHHHHH---hCCCeEEEecCCC-----cCh---HH
Confidence 44557788888777777665 456777765544 111 111111 2225555543211 011 12
Q ss_pred HHHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHHh-cCCCCcceEEE
Q 048655 192 QRVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRW-CDDIPSILHLQ 241 (288)
Q Consensus 192 qRn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr~-cdg~p~~~~l~ 241 (288)
.|| .+++.+ .+|.|++.|.|.++.++.+..+.. ....|....+.
T Consensus 65 a~n---~~~~~~---~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~ 109 (166)
T cd04186 65 GNN---QGIREA---KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVG 109 (166)
T ss_pred Hhh---HHHhhC---CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEE
Confidence 233 344433 799999999999999999987654 33244443333
No 7
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=77.29 E-value=14 Score=28.89 Aligned_cols=93 Identities=14% Similarity=0.119 Sum_probs=52.1
Q ss_pred ecCChHHHHHHHHHHhcc---cccEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCCCchhhHHHH
Q 048655 116 LFSTEEDILTIRWKELYP---FITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPFVEEAYQ 192 (288)
Q Consensus 116 lfs~ElDlLEIRL~EL~d---vVD~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~q 192 (288)
...||.+.|+--|..|.. ..+..|||..+.| ++... -.+++.....+|.++..+... ..
T Consensus 5 p~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~----d~~~~---~~~~~~~~~~~i~~i~~~~n~-----------g~ 66 (169)
T PF00535_consen 5 PTYNEAEYLERTLESLLKQTDPDFEIIVVDDGST----DETEE---ILEEYAESDPNIRYIRNPENL-----------GF 66 (169)
T ss_dssp EESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-S----SSHHH---HHHHHHCCSTTEEEEEHCCCS-----------HH
T ss_pred EeeCCHHHHHHHHHHHhhccCCCEEEEEeccccc----ccccc---ccccccccccccccccccccc-----------cc
Confidence 445566666655555544 4778888887764 22211 123333357788888765321 11
Q ss_pred HHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 193 RVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 193 Rn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
..++..+++. ..+|.|++.|.|.++.+..|..|.
T Consensus 67 ~~~~n~~~~~---a~~~~i~~ld~D~~~~~~~l~~l~ 100 (169)
T PF00535_consen 67 SAARNRGIKH---AKGEYILFLDDDDIISPDWLEELV 100 (169)
T ss_dssp HHHHHHHHHH-----SSEEEEEETTEEE-TTHHHHHH
T ss_pred cccccccccc---cceeEEEEeCCCceEcHHHHHHHH
Confidence 2233334443 356699999999999999887543
No 8
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=73.72 E-value=56 Score=28.30 Aligned_cols=104 Identities=11% Similarity=0.097 Sum_probs=56.6
Q ss_pred EecCChHHHHHHHHHHhcc--cc-c--EEEEEEeCCCccCCCcccc-chhchhcccccCCCEEEEEeCCccCCCCCchhh
Q 048655 115 VLFSTEEDILTIRWKELYP--FI-T--QFVLLESNSTFTGLPKPLF-FASNRHKFKFVEPRLTYGMIGGRFKKGENPFVE 188 (288)
Q Consensus 115 flfs~ElDlLEIRL~EL~d--vV-D--~FVIvESn~TFtG~pKpL~-f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w~~ 188 (288)
+...||-+.|+--|+.|.. +. + .+|||. +.| ...+. .++....+.....+|.++.-... .++.
T Consensus 7 Ip~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD-~s~----D~t~~~~~~~~~~~~~~~~~i~~~~~~~~-----~G~k- 75 (232)
T cd06437 7 LPVFNEKYVVERLIEAACALDYPKDRLEIQVLD-DST----DETVRLAREIVEEYAAQGVNIKHVRRADR-----TGYK- 75 (232)
T ss_pred EecCCcHHHHHHHHHHHHhcCCCccceEEEEEE-CCC----CcHHHHHHHHHHHHhhcCCceEEEECCCC-----CCCc-
Confidence 3445777888877777632 32 2 345555 444 11111 11111223333556766653321 1221
Q ss_pred HHHHHHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHHhcCCCCc
Q 048655 189 EAYQRVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRWCDDIPS 236 (288)
Q Consensus 189 E~~qRn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr~cdg~p~ 236 (288)
-.++..+++. ..+|+|++.|.|-++.|+.|..+.....-|+
T Consensus 76 ----~~a~n~g~~~---a~~~~i~~~DaD~~~~~~~l~~~~~~~~~~~ 116 (232)
T cd06437 76 ----AGALAEGMKV---AKGEYVAIFDADFVPPPDFLQKTPPYFADPK 116 (232)
T ss_pred ----hHHHHHHHHh---CCCCEEEEEcCCCCCChHHHHHhhhhhcCCC
Confidence 1233344443 3689999999999999999997665442343
No 9
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=71.37 E-value=20 Score=30.61 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=25.0
Q ss_pred HHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHHh
Q 048655 196 LDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRW 230 (288)
Q Consensus 196 l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr~ 230 (288)
+..+++.+ .+|.|++.|.|.++.|+.|..|-.
T Consensus 76 ~n~~~~~a---~~d~i~~lD~D~~~~~~~l~~l~~ 107 (234)
T cd06421 76 LNNALAHT---TGDFVAILDADHVPTPDFLRRTLG 107 (234)
T ss_pred HHHHHHhC---CCCEEEEEccccCcCccHHHHHHH
Confidence 44455432 699999999999999999997654
No 10
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=70.60 E-value=40 Score=29.06 Aligned_cols=97 Identities=14% Similarity=0.199 Sum_probs=50.8
Q ss_pred cCChHHHHHHHHHHhccc---ccEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCCCchhhHHHHH
Q 048655 117 FSTEEDILTIRWKELYPF---ITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPFVEEAYQR 193 (288)
Q Consensus 117 fs~ElDlLEIRL~EL~dv---VD~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~qR 193 (288)
+|.|.++|+-=|..|... -..+|||..+.|-......+ ++ -.+.+..+|.++..+... + . ..
T Consensus 7 ~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i--~~---~~~~~~~~i~~i~~~~~~--G---~-----~~ 71 (236)
T cd06435 7 YEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPV--EA---HCAQLGERFRFFHVEPLP--G---A-----KA 71 (236)
T ss_pred CCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHH--HH---HHHHhCCcEEEEEcCCCC--C---C-----ch
Confidence 344446666544444322 24678887666521100000 11 112233466665543211 1 1 12
Q ss_pred HHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 194 VALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 194 n~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
.++..+++.+. ..+|+|++.|.|-++.|+.|..+.
T Consensus 72 ~a~n~g~~~a~-~~~d~i~~lD~D~~~~~~~l~~l~ 106 (236)
T cd06435 72 GALNYALERTA-PDAEIIAVIDADYQVEPDWLKRLV 106 (236)
T ss_pred HHHHHHHHhcC-CCCCEEEEEcCCCCcCHHHHHHHH
Confidence 24444554332 247999999999999999999764
No 11
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=70.52 E-value=43 Score=25.19 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=50.6
Q ss_pred EecCChHHHHHHHHHHhccc---ccEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCCCchhhHHH
Q 048655 115 VLFSTEEDILTIRWKELYPF---ITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPFVEEAY 191 (288)
Q Consensus 115 flfs~ElDlLEIRL~EL~dv---VD~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~ 191 (288)
++..+|.++|+.-++.+... ...++|+..+.+ +..... ..+......++.++...... .-..
T Consensus 3 i~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~----~~~~~~---~~~~~~~~~~~~~~~~~~~~--------g~~~ 67 (156)
T cd00761 3 IPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGST----DGTLEI---LEEYAKKDPRVIRVINEENQ--------GLAA 67 (156)
T ss_pred EeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCC----ccHHHH---HHHHHhcCCCeEEEEecCCC--------ChHH
Confidence 34456778888777777665 466777766544 111110 11111112334444332111 1122
Q ss_pred HHHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHH
Q 048655 192 QRVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLL 228 (288)
Q Consensus 192 qRn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~L 228 (288)
.+|.. +..+ .+|.+++.|.|.++.++.+..+
T Consensus 68 ~~~~~---~~~~---~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 68 ARNAG---LKAA---RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred HHHHH---HHHh---cCCEEEEECCCCccCccHHHHH
Confidence 33333 3322 6999999999999999998875
No 12
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=70.34 E-value=67 Score=27.31 Aligned_cols=119 Identities=12% Similarity=0.071 Sum_probs=62.6
Q ss_pred EecCChHHHHHHHHHHhcccc--cEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCCCchhhHHHH
Q 048655 115 VLFSTEEDILTIRWKELYPFI--TQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPFVEEAYQ 192 (288)
Q Consensus 115 flfs~ElDlLEIRL~EL~dvV--D~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~q 192 (288)
+...||-+.|+-=|+.|...- ...|||..+.| ...... . ++....+++.++......... + -...
T Consensus 3 Ip~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~--D~t~~~--~----~~~~~~~~v~~i~~~~~~~~~--G---k~~a 69 (191)
T cd06436 3 VPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASD--DDTAGI--V----RLAITDSRVHLLRRHLPNART--G---KGDA 69 (191)
T ss_pred EeccccHHHHHHHHHHHHhCCCCeEEEEEECCCC--cCHHHH--H----hheecCCcEEEEeccCCcCCC--C---HHHH
Confidence 345567778876666665543 35677777666 111111 1 111223456555432110000 1 1344
Q ss_pred HHHHHHHHHH----cCCC-CCcEEEeeCCCcCCCHHHHHHHHhcCCCCcceEEEeeeee
Q 048655 193 RVALDQLLRI----AGIE-DDDLLIMSDVDEIPSAHTINLLRWCDDIPSILHLQLRNYL 246 (288)
Q Consensus 193 Rn~l~~~lr~----~~~~-~dDlIIvSDvDEIP~~~tl~~Lr~cdg~p~~~~l~lr~y~ 246 (288)
+|...+..+. .|.. .+|+|++.|.|.++.|..|..+...-.-|..-..+.+..+
T Consensus 70 ln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~ 128 (191)
T cd06436 70 LNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRM 128 (191)
T ss_pred HHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEE
Confidence 5554443321 1222 4589999999999999999987655434554444444433
No 13
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=70.10 E-value=52 Score=27.51 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=21.2
Q ss_pred CCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 206 EDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 206 ~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
..+|+|++.|.|-+|.|+.|..+.
T Consensus 80 ~~~d~v~~~DaD~~~~p~~l~~l~ 103 (183)
T cd06438 80 DDPDAVVVFDADNLVDPNALEELN 103 (183)
T ss_pred CCCCEEEEEcCCCCCChhHHHHHH
Confidence 469999999999999999998654
No 14
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=68.25 E-value=73 Score=26.90 Aligned_cols=88 Identities=14% Similarity=-0.052 Sum_probs=49.4
Q ss_pred cCChHHHHHHHHHHhcccc---cEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCCCchhhHHHHH
Q 048655 117 FSTEEDILTIRWKELYPFI---TQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPFVEEAYQR 193 (288)
Q Consensus 117 fs~ElDlLEIRL~EL~dvV---D~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~qR 193 (288)
..||-+.|+--|+.|.... ...|||+.+.| .... .. .+. .++++..-+. + -...+
T Consensus 7 ~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~--d~~~--~~------~~~--~~~~~~~~~~-------g---~~~a~ 64 (221)
T cd02522 7 TLNEAENLPRLLASLRRLNPLPLEIIVVDGGST--DGTV--AI------ARS--AGVVVISSPK-------G---RARQM 64 (221)
T ss_pred ccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCC--ccHH--HH------Hhc--CCeEEEeCCc-------C---HHHHH
Confidence 3344456666666665544 56777776654 1111 11 111 3455443221 1 12344
Q ss_pred HHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHHhcC
Q 048655 194 VALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRWCD 232 (288)
Q Consensus 194 n~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr~cd 232 (288)
|. ++..+ .+|+|++.|.|.+|.++.++.|....
T Consensus 65 n~---g~~~a---~~~~i~~~D~D~~~~~~~l~~l~~~~ 97 (221)
T cd02522 65 NA---GAAAA---RGDWLLFLHADTRLPPDWDAAIIETL 97 (221)
T ss_pred HH---HHHhc---cCCEEEEEcCCCCCChhHHHHHHHHh
Confidence 43 34332 38999999999999999999864433
No 15
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=67.66 E-value=50 Score=27.24 Aligned_cols=95 Identities=19% Similarity=0.154 Sum_probs=51.6
Q ss_pred ecCChHHHHHHHHHHhcccc------cEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCCCchhhH
Q 048655 116 LFSTEEDILTIRWKELYPFI------TQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPFVEE 189 (288)
Q Consensus 116 lfs~ElDlLEIRL~EL~dvV------D~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E 189 (288)
...||-+.|+--|..|.... ...|||..+.|-.. . +....+..-..+|.++...... +.
T Consensus 4 p~~n~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t----~---~~~~~~~~~~~~i~~i~~~~n~-----G~--- 68 (181)
T cd04187 4 PVYNEEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRT----L---EILRELAARDPRVKVIRLSRNF-----GQ--- 68 (181)
T ss_pred eecCchhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccH----H---HHHHHHHhhCCCEEEEEecCCC-----Cc---
Confidence 34455566655555554433 36888876665211 1 1112232222466665543110 11
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHHhc
Q 048655 190 AYQRVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRWC 231 (288)
Q Consensus 190 ~~qRn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr~c 231 (288)
-.++..+++. ..+|.|++.|.|..+.++.|..+-..
T Consensus 69 ---~~a~n~g~~~---a~~d~i~~~D~D~~~~~~~l~~l~~~ 104 (181)
T cd04187 69 ---QAALLAGLDH---ARGDAVITMDADLQDPPELIPEMLAK 104 (181)
T ss_pred ---HHHHHHHHHh---cCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 1333444543 35799999999999999988876543
No 16
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=67.39 E-value=69 Score=27.39 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH-hcC
Q 048655 193 RVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR-WCD 232 (288)
Q Consensus 193 Rn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr-~cd 232 (288)
.+++..+++.+ .+|+|++.|.|.+|.++.|..+. .++
T Consensus 66 ~~a~n~g~~~a---~~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 66 RRALAEGIRHV---TTDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHHHHh---CCCEEEEECCCceeChhHHHHHHHhcc
Confidence 45565666543 78999999999999999997544 443
No 17
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=65.71 E-value=5 Score=30.49 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=17.6
Q ss_pred HHHHHHHcCCCCCcEEEeeCC
Q 048655 196 LDQLLRIAGIEDDDLLIMSDV 216 (288)
Q Consensus 196 l~~~lr~~~~~~dDlIIvSDv 216 (288)
+.+.|+++|+++||.|.+.|.
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T TIGR03595 45 VEDALRKAGAKDGDTVRIGDF 65 (69)
T ss_pred HHHHHHHcCCCCCCEEEEccE
Confidence 345778899999999999885
No 18
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=62.57 E-value=95 Score=26.25 Aligned_cols=94 Identities=14% Similarity=0.086 Sum_probs=52.1
Q ss_pred EecCChHHHHHHHHHHhccc----ccEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCCCchhhHH
Q 048655 115 VLFSTEEDILTIRWKELYPF----ITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPFVEEA 190 (288)
Q Consensus 115 flfs~ElDlLEIRL~EL~dv----VD~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~ 190 (288)
+...||-+.|+-=|+.|... ....|||....|- .-... .+.+..-.+.|..+..... .+
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d----~t~~~---~~~~~~~~~~i~~~~~~~n-----~G----- 65 (224)
T cd06442 3 IPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPD----GTAEI---VRELAKEYPRVRLIVRPGK-----RG----- 65 (224)
T ss_pred EeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCC----ChHHH---HHHHHHhCCceEEEecCCC-----CC-----
Confidence 34556777777777777653 4578888866651 11111 1122222233333332211 01
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 191 YQRVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 191 ~qRn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
.-.++..+++. ..+|.|++.|.|.++.|+.+..+-
T Consensus 66 -~~~a~n~g~~~---a~gd~i~~lD~D~~~~~~~l~~l~ 100 (224)
T cd06442 66 -LGSAYIEGFKA---ARGDVIVVMDADLSHPPEYIPELL 100 (224)
T ss_pred -hHHHHHHHHHH---cCCCEEEEEECCCCCCHHHHHHHH
Confidence 11334445543 346999999999999999987554
No 19
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=61.39 E-value=58 Score=31.48 Aligned_cols=105 Identities=18% Similarity=0.118 Sum_probs=57.5
Q ss_pred EEEEEecCChHHHHHHHHHHhcc--c--ccEEEEEEeCCCccCCCccccchhchhccc-ccC--CCEEEEEeCCccCCCC
Q 048655 111 VFDAVLFSTEEDILTIRWKELYP--F--ITQFVLLESNSTFTGLPKPLFFASNRHKFK-FVE--PRLTYGMIGGRFKKGE 183 (288)
Q Consensus 111 IyD~flfs~ElDlLEIRL~EL~d--v--VD~FVIvESn~TFtG~pKpL~f~~n~~rF~-~~~--~KIiy~~l~~~~~~~~ 183 (288)
|-=++...||-+.|+-=|+.|.. + .-..|||..+.|= . -. +..+++. .+. ++|..+..+..+
T Consensus 42 VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD--~--T~---~i~~~~~~~~~~~~~i~vi~~~~~~---- 110 (384)
T TIGR03469 42 VVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTD--G--TA---DIARAAARAYGRGDRLTVVSGQPLP---- 110 (384)
T ss_pred EEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCC--c--HH---HHHHHHHHhcCCCCcEEEecCCCCC----
Confidence 43344455777888877777743 2 2367788776661 1 11 1112221 121 356655432211
Q ss_pred CchhhHHHHHHHHHHHHHHcCC--CCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 184 NPFVEEAYQRVALDQLLRIAGI--EDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 184 ~~w~~E~~qRn~l~~~lr~~~~--~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
..|.--.. ++.++++.+.. .++|+|++.|.|-++.|+.+..+-
T Consensus 111 ~g~~Gk~~---A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv 155 (384)
T TIGR03469 111 PGWSGKLW---AVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLV 155 (384)
T ss_pred CCCcchHH---HHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHH
Confidence 23332222 34444443321 238999999999999999988654
No 20
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=59.22 E-value=1.1e+02 Score=26.01 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHH-HHhc
Q 048655 194 VALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINL-LRWC 231 (288)
Q Consensus 194 n~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~-Lr~c 231 (288)
.++..+++.+ ..|+|++.|.|.+|.|+.|.. ++.+
T Consensus 76 ~a~n~~~~~~---~~d~i~~lD~D~~~~p~~l~~~~~~~ 111 (228)
T PF13641_consen 76 RALNEALAAA---RGDYILFLDDDTVLDPDWLERLLAAF 111 (228)
T ss_dssp HHHHHHHHH------SEEEEE-SSEEE-CHHHHHHHHHH
T ss_pred HHHHHHHHhc---CCCEEEEECCCcEECHHHHHHHHHHH
Confidence 4455556542 499999999999999999986 4444
No 21
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=57.63 E-value=1.1e+02 Score=25.53 Aligned_cols=95 Identities=15% Similarity=0.055 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHhccc---ccEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCCCchhhHHHHHHH
Q 048655 119 TEEDILTIRWKELYPF---ITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPFVEEAYQRVA 195 (288)
Q Consensus 119 ~ElDlLEIRL~EL~dv---VD~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~qRn~ 195 (288)
||-+.|+-=|..|... -+..|||+.+.|=. ... -..++..- .+|.++..+... + -...+|.
T Consensus 7 n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~----t~~---~~~~~~~~-~~i~~~~~~~n~--g------~~~~~n~ 70 (202)
T cd04185 7 NRLDLLKECLDALLAQTRPPDHIIVIDNASTDG----TAE---WLTSLGDL-DNIVYLRLPENL--G------GAGGFYE 70 (202)
T ss_pred CCHHHHHHHHHHHHhccCCCceEEEEECCCCcc----hHH---HHHHhcCC-CceEEEECcccc--c------hhhHHHH
Confidence 4445666656666443 34788888877621 111 11122111 125555433110 0 1233444
Q ss_pred HHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHHhcC
Q 048655 196 LDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRWCD 232 (288)
Q Consensus 196 l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr~cd 232 (288)
..+... ...+|.|++-|.|.++.++.+..|-..-
T Consensus 71 ~~~~a~---~~~~d~v~~ld~D~~~~~~~l~~l~~~~ 104 (202)
T cd04185 71 GVRRAY---ELGYDWIWLMDDDAIPDPDALEKLLAYA 104 (202)
T ss_pred HHHHHh---ccCCCEEEEeCCCCCcChHHHHHHHHHH
Confidence 333221 2478999999999999999998766443
No 22
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=57.12 E-value=54 Score=35.15 Aligned_cols=34 Identities=24% Similarity=0.307 Sum_probs=25.5
Q ss_pred HHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 195 ALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 195 ~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
.+...++..| ...|.|++.|+|-+|.+++|..+-
T Consensus 209 Nl~~~~~~~~-~~~eyivvLDADs~m~~d~L~~lv 242 (691)
T PRK05454 209 NIADFCRRWG-GAYDYMVVLDADSLMSGDTLVRLV 242 (691)
T ss_pred HHHHHHHhcC-CCcCEEEEEcCCCCCCHHHHHHHH
Confidence 3445555432 367999999999999999988654
No 23
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=56.52 E-value=1.3e+02 Score=26.03 Aligned_cols=99 Identities=15% Similarity=0.240 Sum_probs=51.9
Q ss_pred CCcEEEEEecCChHHHHHHHHHHhccc--cc---EEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCC
Q 048655 108 PRRVFDAVLFSTEEDILTIRWKELYPF--IT---QFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKG 182 (288)
Q Consensus 108 pRkIyD~flfs~ElDlLEIRL~EL~dv--VD---~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~ 182 (288)
+.+|-=++...||-+.|+--|+.+... .+ .+|||..+.+ ..... -...+... .+.++..+.. .+
T Consensus 28 ~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~----d~t~~---~~~~~~~~--~v~~i~~~~~--~g 96 (251)
T cd06439 28 LPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGST----DGTAE---IAREYADK--GVKLLRFPER--RG 96 (251)
T ss_pred CCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCC----ccHHH---HHHHHhhC--cEEEEEcCCC--CC
Confidence 334444455557777887777776442 22 4666654443 11111 11223221 3544443211 01
Q ss_pred CCchhhHHHHHHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 183 ENPFVEEAYQRVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 183 ~~~w~~E~~qRn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
-... +..+++.+ .+|+|++.|.|.+|.++.+..|-
T Consensus 97 ------~~~a---~n~gi~~a---~~d~i~~lD~D~~~~~~~l~~l~ 131 (251)
T cd06439 97 ------KAAA---LNRALALA---TGEIVVFTDANALLDPDALRLLV 131 (251)
T ss_pred ------hHHH---HHHHHHHc---CCCEEEEEccccCcCHHHHHHHH
Confidence 1222 33344332 36999999999999999888544
No 24
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=54.91 E-value=8.5 Score=29.18 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=14.6
Q ss_pred HHHHHHHcCCCCCcEEEeeCC
Q 048655 196 LDQLLRIAGIEDDDLLIMSDV 216 (288)
Q Consensus 196 l~~~lr~~~~~~dDlIIvSDv 216 (288)
+.+.|+++|+++||.|.+.|.
T Consensus 45 v~~~L~~~G~~~GD~V~Ig~~ 65 (69)
T PF09269_consen 45 VEKALRKAGAKEGDTVRIGDY 65 (69)
T ss_dssp HHHHHHTTT--TT-EEEETTE
T ss_pred HHHHHHHcCCCCCCEEEEcCE
Confidence 345778899999999999885
No 25
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=53.19 E-value=1.2e+02 Score=24.61 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=21.3
Q ss_pred CCcEEEeeCCCcCCCHHHHHHHHhc
Q 048655 207 DDDLLIMSDVDEIPSAHTINLLRWC 231 (288)
Q Consensus 207 ~dDlIIvSDvDEIP~~~tl~~Lr~c 231 (288)
.+|.|++.|.|.++.|+.|..|-.+
T Consensus 79 ~gd~i~~lD~D~~~~~~~l~~l~~~ 103 (185)
T cd04179 79 RGDIVVTMDADLQHPPEDIPKLLEK 103 (185)
T ss_pred cCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 4599999999999999999866554
No 26
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=51.32 E-value=81 Score=31.16 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 195 ALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 195 ~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
++..+++. ..+|+|++.|.|.+|.++++..+-
T Consensus 146 AlN~gl~~---a~~d~iv~lDAD~~~~~d~L~~lv 177 (444)
T PRK14583 146 ALRMGAAA---ARSEYLVCIDGDALLDKNAVPYLV 177 (444)
T ss_pred HHHHHHHh---CCCCEEEEECCCCCcCHHHHHHHH
Confidence 34444443 468999999999999999998653
No 27
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=51.31 E-value=1.4e+02 Score=24.73 Aligned_cols=93 Identities=14% Similarity=0.194 Sum_probs=49.6
Q ss_pred cCChHHHHHHHHHHhcccc---cEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCCCchhhHHHHH
Q 048655 117 FSTEEDILTIRWKELYPFI---TQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPFVEEAYQR 193 (288)
Q Consensus 117 fs~ElDlLEIRL~EL~dvV---D~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~qR 193 (288)
++.|++.|+-=|+.|.... ...|||..+.+-.+. +.+ .+.+..-.+++.++..+. ..++ ...+
T Consensus 10 ~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~-~~~-----~~~~~~~~~~~~~~~~~~-----~~g~---~~a~ 75 (202)
T cd04184 10 YNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEV-KRV-----LKKYAAQDPRIKVVFREE-----NGGI---SAAT 75 (202)
T ss_pred ccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHH-HHH-----HHHHHhcCCCEEEEEccc-----CCCH---HHHH
Confidence 4445477776666664321 267778766652111 111 111222234565554321 1112 1223
Q ss_pred HHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 194 VALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 194 n~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
| .+++. ..+|.|++.|.|.++.++.+..+.
T Consensus 76 n---~g~~~---a~~d~i~~ld~D~~~~~~~l~~~~ 105 (202)
T cd04184 76 N---SALEL---ATGEFVALLDHDDELAPHALYEVV 105 (202)
T ss_pred H---HHHHh---hcCCEEEEECCCCcCChHHHHHHH
Confidence 3 33432 257999999999999999887543
No 28
>PRK11204 N-glycosyltransferase; Provisional
Probab=51.08 E-value=1.3e+02 Score=28.97 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 194 VALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 194 n~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
+++..+++. ..+|.|++-|.|.+|.|+.|..+-
T Consensus 124 ~aln~g~~~---a~~d~i~~lDaD~~~~~d~L~~l~ 156 (420)
T PRK11204 124 NALNTGAAA---ARSEYLVCIDGDALLDPDAAAYMV 156 (420)
T ss_pred HHHHHHHHH---cCCCEEEEECCCCCCChhHHHHHH
Confidence 444455543 368999999999999999988653
No 29
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=50.09 E-value=8.3 Score=20.64 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=9.3
Q ss_pred eeecCCCCCCCC
Q 048655 66 SYFLRPLWESPP 77 (288)
Q Consensus 66 ~~~~rp~W~~p~ 77 (288)
+|.|.|+|.|+.
T Consensus 1 ~C~C~~G~~G~~ 12 (13)
T PF12661_consen 1 TCQCPPGWTGPN 12 (13)
T ss_dssp EEEE-TTEETTT
T ss_pred CccCcCCCcCCC
Confidence 588999999975
No 30
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=48.15 E-value=1.1e+02 Score=26.02 Aligned_cols=35 Identities=17% Similarity=0.050 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHHhc
Q 048655 194 VALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRWC 231 (288)
Q Consensus 194 n~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr~c 231 (288)
+++..+++. ..+|+|++.|.|.++.|+.|..+-..
T Consensus 76 ~~~n~g~~~---a~~d~i~~~D~D~~~~~~~l~~l~~~ 110 (196)
T cd02520 76 NNLIKGYEE---ARYDILVISDSDISVPPDYLRRMVAP 110 (196)
T ss_pred HHHHHHHHh---CCCCEEEEECCCceEChhHHHHHHHH
Confidence 445455553 35899999999999999999865543
No 31
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=48.09 E-value=1.7e+02 Score=24.86 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.8
Q ss_pred CCcEEEeeCCCcCCCHHHHHHHH
Q 048655 207 DDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 207 ~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
.+|.|++-|.|.++.|+.|..+-
T Consensus 81 ~~d~v~~lD~D~~~~~~~l~~~~ 103 (249)
T cd02525 81 RGDIIIRVDAHAVYPKDYILELV 103 (249)
T ss_pred CCCEEEEECCCccCCHHHHHHHH
Confidence 68999999999999999998655
No 32
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=47.78 E-value=1.7e+02 Score=24.59 Aligned_cols=34 Identities=15% Similarity=0.208 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHHh
Q 048655 194 VALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRW 230 (288)
Q Consensus 194 n~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr~ 230 (288)
.++..+++. ..+|+|++-|.|.++.++.|+.+-.
T Consensus 72 ~a~n~g~~~---~~~d~i~~~D~D~~~~~~~l~~l~~ 105 (229)
T cd04192 72 NALTTAIKA---AKGDWIVTTDADCVVPSNWLLTFVA 105 (229)
T ss_pred HHHHHHHHH---hcCCEEEEECCCcccCHHHHHHHHH
Confidence 344445543 3589999999999999999997664
No 33
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=45.88 E-value=30 Score=33.01 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=27.1
Q ss_pred HHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 193 RVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 193 Rn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
.+++..++..+ .+|+|++.|+|-+|.++.|..+-
T Consensus 126 ~~al~~~l~~~---~~d~V~~~DaD~~~~~d~l~~~~ 159 (439)
T COG1215 126 AGALNNGLKRA---KGDVVVILDADTVPEPDALRELV 159 (439)
T ss_pred hHHHHHHHhhc---CCCEEEEEcCCCCCChhHHHHHH
Confidence 45666666543 49999999999999999998654
No 34
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=45.08 E-value=93 Score=29.79 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=24.2
Q ss_pred HHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 194 VALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 194 n~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
.++..+++. ..+|+|++.|.|--+.++.+..|-
T Consensus 152 ~A~~~Gi~~---a~gd~I~~~DaD~~~~~~~l~~l~ 184 (333)
T PTZ00260 152 GAVRIGMLA---SRGKYILMVDADGATDIDDFDKLE 184 (333)
T ss_pred HHHHHHHHH---ccCCEEEEEeCCCCCCHHHHHHHH
Confidence 445555553 358999999999998888876544
No 35
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=43.64 E-value=1.9e+02 Score=26.46 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=52.6
Q ss_pred cCChH-HHHHHHHHHhcccc-----cEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCCCchhhHH
Q 048655 117 FSTEE-DILTIRWKELYPFI-----TQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPFVEEA 190 (288)
Q Consensus 117 fs~El-DlLEIRL~EL~dvV-----D~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~ 190 (288)
..||. +.|+-=|..+.... ...|||+.+.|-.-. . ...+ .......++|.++..+.. .++.
T Consensus 6 ~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~-~--~~~~--~~~~~~~~~v~vi~~~~n-----~G~~--- 72 (299)
T cd02510 6 FHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPEL-K--LLLE--EYYKKYLPKVKVLRLKKR-----EGLI--- 72 (299)
T ss_pred EecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHH-H--HHHH--HHHhhcCCcEEEEEcCCC-----CCHH---
Confidence 34554 77766677665432 378999977651111 0 1100 011233456666654321 1121
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 191 YQRVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 191 ~qRn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
..|| .+++. ..+|+|++.|.|-++.+..|..|-
T Consensus 73 ~a~N---~g~~~---A~gd~i~fLD~D~~~~~~wL~~ll 105 (299)
T cd02510 73 RARI---AGARA---ATGDVLVFLDSHCEVNVGWLEPLL 105 (299)
T ss_pred HHHH---HHHHH---ccCCEEEEEeCCcccCccHHHHHH
Confidence 2233 33433 368999999999999999988653
No 36
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=43.09 E-value=2e+02 Score=27.41 Aligned_cols=97 Identities=14% Similarity=0.083 Sum_probs=53.6
Q ss_pred EEEEEecCChHHHHHHHHHHhccc------ccEEEEEEeCCCccCCCccccchhchhcc-cccCCCEEEEEeCCccCCCC
Q 048655 111 VFDAVLFSTEEDILTIRWKELYPF------ITQFVLLESNSTFTGLPKPLFFASNRHKF-KFVEPRLTYGMIGGRFKKGE 183 (288)
Q Consensus 111 IyD~flfs~ElDlLEIRL~EL~dv------VD~FVIvESn~TFtG~pKpL~f~~n~~rF-~~~~~KIiy~~l~~~~~~~~ 183 (288)
|-=++...||-+-|+--+++|... -..+|||+.+.|= +.. +-..+. +...++++.+.....
T Consensus 8 vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D-~T~------~il~~~~~~~~~~v~~i~~~~n----- 75 (325)
T PRK10714 8 VSVVIPVYNEQESLPELIRRTTAACESLGKEYEILLIDDGSSD-NSA------EMLVEAAQAPDSHIVAILLNRN----- 75 (325)
T ss_pred EEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCC-cHH------HHHHHHHhhcCCcEEEEEeCCC-----
Confidence 333445567776666555554322 2367888776651 111 111112 123456666554311
Q ss_pred CchhhHHHHHHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHH
Q 048655 184 NPFVEEAYQRVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLL 228 (288)
Q Consensus 184 ~~w~~E~~qRn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~L 228 (288)
. -+-.++..+++. ..+|.|++-|.|....|+.+..|
T Consensus 76 --~----G~~~A~~~G~~~---A~gd~vv~~DaD~q~~p~~i~~l 111 (325)
T PRK10714 76 --Y----GQHSAIMAGFSH---VTGDLIITLDADLQNPPEEIPRL 111 (325)
T ss_pred --C----CHHHHHHHHHHh---CCCCEEEEECCCCCCCHHHHHHH
Confidence 0 112345555554 36899999999999999888643
No 37
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=40.69 E-value=1.7e+02 Score=22.52 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=24.7
Q ss_pred CCcEEEeeCCCcCCCHHHHHHH-HhcCCCCcc
Q 048655 207 DDDLLIMSDVDEIPSAHTINLL-RWCDDIPSI 237 (288)
Q Consensus 207 ~dDlIIvSDvDEIP~~~tl~~L-r~cdg~p~~ 237 (288)
.+|.|++.|.|.++.++.+..+ +....-+..
T Consensus 78 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~ 109 (180)
T cd06423 78 KGDIVVVLDADTILEPDALKRLVVPFFADPKV 109 (180)
T ss_pred CCCEEEEECCCCCcChHHHHHHHHHhccCCCe
Confidence 7999999999999999999987 544433443
No 38
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=40.31 E-value=2.2e+02 Score=27.29 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHHhc
Q 048655 194 VALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRWC 231 (288)
Q Consensus 194 n~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr~c 231 (288)
+++.++++. ..+|+|++.|.|-+|.|+.|+.+-..
T Consensus 116 ~~l~~~~~~---a~ge~i~~~DaD~~~~p~~L~~lv~~ 150 (373)
T TIGR03472 116 SNLINMLPH---ARHDILVIADSDISVGPDYLRQVVAP 150 (373)
T ss_pred HHHHHHHHh---ccCCEEEEECCCCCcChhHHHHHHHH
Confidence 445555543 46999999999999999999977543
No 39
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=38.55 E-value=2.9e+02 Score=26.17 Aligned_cols=31 Identities=26% Similarity=0.240 Sum_probs=22.3
Q ss_pred HHHHHHHHcCCCCCcEEEeeCCCcC-CCHHHHHHH
Q 048655 195 ALDQLLRIAGIEDDDLLIMSDVDEI-PSAHTINLL 228 (288)
Q Consensus 195 ~l~~~lr~~~~~~dDlIIvSDvDEI-P~~~tl~~L 228 (288)
++..++.. ..+|+|++-|.|-+ +.|+.|..|
T Consensus 106 A~~~g~~~---a~gd~vv~lDaD~~~~~p~~l~~l 137 (306)
T PRK13915 106 ALWRSLAA---TTGDIVVFVDADLINFDPMFVPGL 137 (306)
T ss_pred HHHHHHHh---cCCCEEEEEeCccccCCHHHHHHH
Confidence 34445543 46899999999997 788877643
No 40
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=36.11 E-value=2.3e+02 Score=22.88 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=19.0
Q ss_pred CCcEEEeeCCCcCCCHHHHHHH
Q 048655 207 DDDLLIMSDVDEIPSAHTINLL 228 (288)
Q Consensus 207 ~dDlIIvSDvDEIP~~~tl~~L 228 (288)
.+|.|++.|.|.++.++.+..+
T Consensus 75 ~~~~v~~ld~D~~~~~~~~~~~ 96 (202)
T cd06433 75 TGDIIGFLNSDDTLLPGALLAV 96 (202)
T ss_pred CCCEEEEeCCCcccCchHHHHH
Confidence 5799999999999998877754
No 41
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=35.60 E-value=2.1e+02 Score=29.63 Aligned_cols=23 Identities=9% Similarity=0.390 Sum_probs=20.5
Q ss_pred CcEEEeeCCCcCCCHHHHHHHHh
Q 048655 208 DDLLIMSDVDEIPSAHTINLLRW 230 (288)
Q Consensus 208 dDlIIvSDvDEIP~~~tl~~Lr~ 230 (288)
-|+|++.|+|-+|.|+++..+..
T Consensus 159 ~d~vvi~DAD~~v~Pd~Lr~~~~ 181 (504)
T PRK14716 159 FAIIVLHDAEDVIHPLELRLYNY 181 (504)
T ss_pred cCEEEEEcCCCCcCccHHHHHHh
Confidence 39999999999999999998753
No 42
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=35.40 E-value=30 Score=34.91 Aligned_cols=69 Identities=22% Similarity=0.355 Sum_probs=45.5
Q ss_pred CCCcEEEeeCCCcCCCHHHHHHHHhcCCCCcceEEEeeeeeeeEEeeeC----------C---------Ccee----eeE
Q 048655 206 EDDDLLIMSDVDEIPSAHTINLLRWCDDIPSILHLQLRNYLYSFEYFVD----------N---------NSWR----ASV 262 (288)
Q Consensus 206 ~~dDlIIvSDvDEIP~~~tl~~Lr~cdg~p~~~~l~lr~y~YsF~~~~~----------~---------~~W~----~~a 262 (288)
.-|||||=.=++|-|. ..+++||.|. .=||+|.-+|. + +-|. .|+
T Consensus 8 tlGDlvIDLf~~erP~-~clNFLKLCk-----------~KYYN~clfh~vq~~f~aQTGDPtGtG~GG~si~~~lyG~q~ 75 (479)
T KOG0415|consen 8 TLGDLVIDLFVKERPR-TCLNFLKLCK-----------IKYYNFCLFHTVQRDFTAQTGDPTGTGDGGESIYGVLYGEQA 75 (479)
T ss_pred ecccEEeeeecccCcH-HHHHHHHHHh-----------HhhcccceeeeccccceeecCCCCCCCCCcceeeeecccccc
Confidence 3689999999999996 5799999998 34677666552 1 1132 344
Q ss_pred EEeecCc-cccccccccccccCCCC
Q 048655 263 HQYKRGK-TRYAHYRQTDLLFSDAG 286 (288)
Q Consensus 263 ~~y~~~~-t~y~~~r~~d~~ladaG 286 (288)
.+|.+.. -...|.+.+-.-+++||
T Consensus 76 rffeaE~~p~l~Hsk~G~vsmvs~g 100 (479)
T KOG0415|consen 76 RFFEAEFLPKLKHSKMGTVSMVSAG 100 (479)
T ss_pred hhhhhhhcccccccccceEEeecCC
Confidence 4443222 24668888877666666
No 43
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=34.12 E-value=1.9e+02 Score=25.73 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=21.4
Q ss_pred CCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 205 IEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 205 ~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
...+|+|++.|.|-++.++.|..+-
T Consensus 71 ~a~~e~i~~~DaD~~~~~~~l~~l~ 95 (244)
T cd04190 71 PDDPEFILLVDADTKFDPDSIVQLY 95 (244)
T ss_pred cCCCCEEEEECCCCcCCHhHHHHHH
Confidence 3579999999999999999988543
No 44
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=30.72 E-value=75 Score=27.58 Aligned_cols=32 Identities=28% Similarity=0.193 Sum_probs=25.6
Q ss_pred HHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 196 LDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 196 l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
|.++++. -...|+|+++|.|=.++|+.|..|-
T Consensus 22 L~~~~~~--~a~~d~~~~~DsDi~v~p~~L~~lv 53 (175)
T PF13506_consen 22 LAQGLEA--GAKYDYLVISDSDIRVPPDYLRELV 53 (175)
T ss_pred HHHHHHh--hCCCCEEEEECCCeeECHHHHHHHH
Confidence 4445543 2689999999999999999999765
No 45
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=30.51 E-value=73 Score=24.95 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=20.6
Q ss_pred CCEEEEEeCCccCCCCCchhhHHHHHHHHHHHH-----HHcCCCCCcEEEe
Q 048655 168 PRLTYGMIGGRFKKGENPFVEEAYQRVALDQLL-----RIAGIEDDDLLIM 213 (288)
Q Consensus 168 ~KIiy~~l~~~~~~~~~~w~~E~~qRn~l~~~l-----r~~~~~~dDlIIv 213 (288)
++.++++|.... + |...|+.++.+.| ...|++++||+|+
T Consensus 27 ~~~v~I~It~~~--g-----Rs~e~K~~ly~~l~~~L~~~~gi~p~Dv~I~ 70 (82)
T PF14552_consen 27 DDFVIIQITSGA--G-----RSTEQKKALYRALAERLAEKLGIRPEDVMIV 70 (82)
T ss_dssp TT-EEEEEEECS----------HHHHHHHHHHHHHHHHHHH---GGGEEEE
T ss_pred CCEEEEEEEECC--C-----CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 566676664321 1 4556777776643 3479999999886
No 46
>PRK10063 putative glycosyl transferase; Provisional
Probab=29.83 E-value=4e+02 Score=24.10 Aligned_cols=34 Identities=12% Similarity=0.248 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHHhc
Q 048655 195 ALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRWC 231 (288)
Q Consensus 195 ~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr~c 231 (288)
++..+++. ..+|.|++.|.|.+..+.++++++..
T Consensus 73 A~N~Gi~~---a~g~~v~~ld~DD~~~~~~~~~~~~~ 106 (248)
T PRK10063 73 AMNKGIAM---AQGRFALFLNSGDIFHQDAANFVRQL 106 (248)
T ss_pred HHHHHHHH---cCCCEEEEEeCCcccCcCHHHHHHHH
Confidence 45555654 36899999999999999876666544
No 47
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=29.47 E-value=3.9e+02 Score=23.45 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHH
Q 048655 195 ALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLL 228 (288)
Q Consensus 195 ~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~L 228 (288)
++..+++. ..+|.|++.|.|-++.|+.|..|
T Consensus 84 a~n~g~~~---a~g~~i~~lD~D~~~~~~~l~~l 114 (243)
T PLN02726 84 AYIHGLKH---ASGDFVVIMDADLSHHPKYLPSF 114 (243)
T ss_pred HHHHHHHH---cCCCEEEEEcCCCCCCHHHHHHH
Confidence 44445543 36899999999999999998643
No 48
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=29.23 E-value=3.5e+02 Score=22.86 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=30.6
Q ss_pred HHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHHhc-CCCCcceEEEeee
Q 048655 195 ALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLRWC-DDIPSILHLQLRN 244 (288)
Q Consensus 195 ~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr~c-dg~p~~~~l~lr~ 244 (288)
++..+++.+ .+|.|++.|.|..+.++.+..|-.. ..-+..+....+.
T Consensus 73 a~~~g~~~a---~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~ 120 (211)
T cd04188 73 AVRAGMLAA---RGDYILFADADLATPFEELEKLEEALKTSGYDIAIGSRA 120 (211)
T ss_pred HHHHHHHHh---cCCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEEEee
Confidence 444555543 4699999999999999999876653 2123344444443
No 49
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=28.89 E-value=1.4e+02 Score=28.99 Aligned_cols=59 Identities=27% Similarity=0.178 Sum_probs=39.6
Q ss_pred CEEEEEeCCccCCCCCchhhHHHHHHHHHHHHHHc-CCCCCcEEEeeCC--CcCCCHHHHHH
Q 048655 169 RLTYGMIGGRFKKGENPFVEEAYQRVALDQLLRIA-GIEDDDLLIMSDV--DEIPSAHTINL 227 (288)
Q Consensus 169 KIiy~~l~~~~~~~~~~w~~E~~qRn~l~~~lr~~-~~~~dDlIIvSDv--DEIP~~~tl~~ 227 (288)
||+|..--+-.....+.-.++..+++++.++++.+ ..+.|=|||.+|+ +..|+++++..
T Consensus 2 kilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~ 63 (390)
T COG0420 2 KILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKL 63 (390)
T ss_pred eeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHH
Confidence 56665533322234456667888888888876532 3455667888899 78999998873
No 50
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=28.53 E-value=1.6e+02 Score=26.31 Aligned_cols=54 Identities=19% Similarity=0.335 Sum_probs=34.9
Q ss_pred cCCCEEEEEeCCccCC----CCCchhhHHHHHHHHHHHHHHcCCC-----CCcEEEeeCCCcCCC
Q 048655 166 VEPRLTYGMIGGRFKK----GENPFVEEAYQRVALDQLLRIAGIE-----DDDLLIMSDVDEIPS 221 (288)
Q Consensus 166 ~~~KIiy~~l~~~~~~----~~~~w~~E~~qRn~l~~~lr~~~~~-----~dDlIIvSDvDEIP~ 221 (288)
+..+|..+.++..... ....|..+.+.|=.+.+++. +++ |.|+|+.+|++|+-.
T Consensus 55 ~~~~i~~~~i~~~~~~~~~~~~~~~~~~~y~rl~l~~ll~--~~~rvlylD~D~lv~~di~~L~~ 117 (248)
T cd04194 55 YNSSIEFIKIDNDDFKFFPATTDHISYATYYRLLIPDLLP--DYDKVLYLDADIIVLGDLSELFD 117 (248)
T ss_pred cCCeEEEEEcCHHHHhcCCcccccccHHHHHHHHHHHHhc--ccCEEEEEeCCEEecCCHHHHhc
Confidence 4567777766532111 35678788888888888775 232 677777777776543
No 51
>PRK10718 RpoE-regulated lipoprotein; Provisional
Probab=27.30 E-value=44 Score=30.64 Aligned_cols=15 Identities=40% Similarity=0.815 Sum_probs=13.7
Q ss_pred eeEeeecCCCCCCCC
Q 048655 63 QKISYFLRPLWESPP 77 (288)
Q Consensus 63 ~~~~~~~rp~W~~p~ 77 (288)
+.|+|...|.|+||+
T Consensus 156 ~~VsYvF~g~W~GPe 170 (191)
T PRK10718 156 QHISYVFSGEWSGPE 170 (191)
T ss_pred CeEEEEecCCcCCCC
Confidence 469999999999998
No 52
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=25.42 E-value=1.1e+02 Score=28.08 Aligned_cols=25 Identities=40% Similarity=0.425 Sum_probs=22.4
Q ss_pred CCCcEEEeeCCCcCCCHHHHHHHHh
Q 048655 206 EDDDLLIMSDVDEIPSAHTINLLRW 230 (288)
Q Consensus 206 ~~dDlIIvSDvDEIP~~~tl~~Lr~ 230 (288)
..+|+|++.|+|=||.++.+..+..
T Consensus 87 A~~d~l~flD~D~i~~~~~i~~~~~ 111 (281)
T PF10111_consen 87 ARGDYLIFLDADCIPSPDFIEKLLN 111 (281)
T ss_pred cCCCEEEEEcCCeeeCHHHHHHHHH
Confidence 3799999999999999999997665
No 53
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=22.89 E-value=1.3e+02 Score=29.86 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 195 ALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 195 ~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
++..+++. ..+|+|++.|.|.+|.|+.++.+-
T Consensus 122 AlN~gl~~---s~g~~v~~~DaD~~~~~d~L~~l~ 153 (439)
T TIGR03111 122 ALNAAIYN---SIGKYIIHIDSDGKLHKDAIKNMV 153 (439)
T ss_pred HHHHHHHH---ccCCEEEEECCCCCcChHHHHHHH
Confidence 44445553 358999999999999999988543
No 54
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=22.38 E-value=1e+02 Score=28.62 Aligned_cols=34 Identities=29% Similarity=0.358 Sum_probs=26.5
Q ss_pred CCcEEEeeCCCcCCCHHHHHHHHhcCCCCcceEEEeee
Q 048655 207 DDDLLIMSDVDEIPSAHTINLLRWCDDIPSILHLQLRN 244 (288)
Q Consensus 207 ~dDlIIvSDvDEIP~~~tl~~Lr~cdg~p~~~~l~lr~ 244 (288)
+-|.+|+.|||=||-...+. ..|+ ..|.|+..-.
T Consensus 66 ~~dc~i~hDVDllP~~~~~~--y~~~--~~p~H~s~~~ 99 (219)
T cd00899 66 DWDCFIFHDVDLLPENDRNL--YGCE--EGPRHLSVPL 99 (219)
T ss_pred CccEEEEecccccccCcccc--ccCC--CCCeEEEEee
Confidence 57999999999999998855 5786 4566766555
No 55
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=21.82 E-value=40 Score=27.77 Aligned_cols=33 Identities=15% Similarity=0.407 Sum_probs=23.0
Q ss_pred CCCCCCCCCCC-cceEeccCccHHhHHHhcCccc
Q 048655 72 LWESPPKPFIK-IPHYYHENVTMERLCKLHGWGI 104 (288)
Q Consensus 72 ~W~~p~~p~~~-iP~~y~~~~~~~~~c~~hgw~~ 104 (288)
+|-|..-|+.. +.-.+.+..++-..|+.|||.-
T Consensus 39 GWtss~D~~~q~v~l~F~skE~Ai~yaer~G~~Y 72 (101)
T PF04800_consen 39 GWTSSGDPLSQSVRLKFDSKEDAIAYAERNGWDY 72 (101)
T ss_dssp -SSSS--SEEE-CEEEESSHHHHHHHHHHCT-EE
T ss_pred CCCCCCChhhCeeEeeeCCHHHHHHHHHHcCCeE
Confidence 45555667775 7778888888999999999953
No 56
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=20.65 E-value=97 Score=28.57 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=20.8
Q ss_pred CCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 206 EDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 206 ~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
...|+|++.|+|-+|.|+.|..+-
T Consensus 94 ~~~~~i~~~DaD~~~~p~~l~~~v 117 (254)
T cd04191 94 SRYDYMVVLDADSLMSGDTIVRLV 117 (254)
T ss_pred CCCCEEEEEeCCCCCCHHHHHHHH
Confidence 467999999999999999988543
Done!