Query 048655
Match_columns 288
No_of_seqs 157 out of 193
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 20:29:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qg8_A Protein (spore coat pol 56.0 65 0.0022 26.5 9.0 94 118-228 10-109 (255)
2 2ffu_A Ppgalnact-2, polypeptid 52.5 53 0.0018 31.0 8.8 92 114-229 71-168 (501)
3 3bcv_A Putative glycosyltransf 44.1 1.3E+02 0.0043 24.4 9.1 92 116-229 12-106 (240)
4 1jg7_A BGT, DNA beta-glucosylt 43.6 23 0.00079 32.6 4.4 46 133-178 57-102 (351)
5 4fix_A UDP-galactofuranosyl tr 39.0 1.4E+02 0.0047 30.1 9.8 105 109-229 180-290 (657)
6 2z86_A Chondroitin synthase; G 38.3 1.2E+02 0.0039 29.3 8.8 97 112-229 95-196 (625)
7 3f1y_A Mannosyl-3-phosphoglyce 32.6 57 0.002 30.5 5.4 101 109-228 94-201 (387)
8 1xhb_A Polypeptide N-acetylgal 30.7 1.5E+02 0.0051 27.4 8.0 96 114-229 34-136 (472)
9 2pa1_A PDZ and LIM domain prot 29.2 1E+02 0.0034 21.7 5.2 38 202-242 41-81 (87)
10 2d7i_A Polypeptide N-acetylgal 27.1 1.5E+02 0.0052 28.7 7.6 95 114-228 117-217 (570)
11 2dc2_A GOPC, golgi associated 25.3 1.1E+02 0.0036 22.7 4.9 47 203-252 52-101 (103)
12 3ckj_A Putative uncharacterize 25.1 1.8E+02 0.0061 25.7 7.1 100 109-229 48-154 (329)
13 3bpu_A Membrane-associated gua 25.1 1.3E+02 0.0046 21.1 5.2 39 203-242 41-82 (88)
14 1ujv_A Membrane associated gua 24.1 1.4E+02 0.0047 21.8 5.2 39 203-242 46-87 (96)
15 2ego_A General receptor for ph 23.3 1.4E+02 0.0048 21.5 5.1 38 202-242 52-92 (96)
16 2lju_A Putative oxidoreductase 20.9 57 0.0019 26.1 2.6 33 72-104 51-83 (108)
No 1
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=55.97 E-value=65 Score=26.55 Aligned_cols=94 Identities=11% Similarity=0.073 Sum_probs=52.1
Q ss_pred CChHHHHHHHHHHhcccc---cEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCC---CCCchhhHHH
Q 048655 118 STEEDILTIRWKELYPFI---TQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKK---GENPFVEEAY 191 (288)
Q Consensus 118 s~ElDlLEIRL~EL~dvV---D~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~---~~~~w~~E~~ 191 (288)
.|+-+.|+--|..+.... ...|||....|= . -.+-.++++. .++|.++..+..... ...+ -..
T Consensus 10 yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d----~---t~~~~~~~~~-~~~i~~i~~~~~~~~~~~~n~G---~~~ 78 (255)
T 1qg8_A 10 YNKSDYVAKSISSILSQTFSDFELFIMDDNSNE----E---TLNVIRPFLN-DNRVRFYQSDISGVKERTEKTR---YAA 78 (255)
T ss_dssp SSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCH----H---HHHHHGGGGG-STTEEEEECCCCSHHHHHSSCH---HHH
T ss_pred CCCHHHHHHHHHHHHhccCCceEEEEEECCCCc----h---HHHHHHHHhh-cCCEEEEecccccccccccccC---HHH
Confidence 344466666666654321 267777766551 0 0112234444 678888775411000 0011 122
Q ss_pred HHHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHH
Q 048655 192 QRVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLL 228 (288)
Q Consensus 192 qRn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~L 228 (288)
.|| .+++. ..+|.|++.|.|.++.|+.|..+
T Consensus 79 a~N---~gi~~---a~g~~i~~lD~Dd~~~~~~l~~~ 109 (255)
T 1qg8_A 79 LIN---QAIEM---AEGEYITYATDDNIYMPDRLLKM 109 (255)
T ss_dssp HHH---HHHHH---CCCSEEEEEETTEEECTTHHHHH
T ss_pred HHH---HHHHH---cCCCEEEEeCCCCccChHHHHHH
Confidence 344 34443 37899999999999999988754
No 2
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=52.50 E-value=53 Score=30.99 Aligned_cols=92 Identities=12% Similarity=-0.020 Sum_probs=52.9
Q ss_pred EEecCChHH-HHHHHHHHhcccc-----cEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCCCchh
Q 048655 114 AVLFSTEED-ILTIRWKELYPFI-----TQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPFV 187 (288)
Q Consensus 114 ~flfs~ElD-lLEIRL~EL~dvV-----D~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w~ 187 (288)
++.+.||-+ .|+--|+.+.... -..|||+...|=. .+ ... .+ -.++|.++..+... +
T Consensus 71 IIp~yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~----t~--~~~---~~-~~~~v~vi~~~~n~-----G-- 133 (501)
T 2ffu_A 71 VITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDP----ED--GAL---LG-KIEKVRVLRNDRRE-----G-- 133 (501)
T ss_dssp EEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCT----HH--HHG---GG-GBTTEEEEECSSCC-----H--
T ss_pred EEEeCcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCch----HH--HHH---Hh-cCCCEEEEECCCCc-----C--
Confidence 344556654 7776676664322 2788888766521 11 111 11 23477777654211 1
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 188 EEAYQRVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 188 ~E~~qRn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
-.. ++..+++.+ .+|+|++.|.|-++.|+.|..|-
T Consensus 134 -~~~---A~N~G~~~A---~gd~i~flD~D~~~~p~~L~~ll 168 (501)
T 2ffu_A 134 -LMR---SRVRGADAA---QAKVLTFLDSHCECNEHWLEPLL 168 (501)
T ss_dssp -HHH---HHHHHHHHC---CSSEEEECCSSEEECTTCHHHHH
T ss_pred -HHH---HHHHHHHhc---CCCEEEEECCCcccCccHHHHHH
Confidence 112 233445443 68999999999999999887543
No 3
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=44.07 E-value=1.3e+02 Score=24.39 Aligned_cols=92 Identities=10% Similarity=0.048 Sum_probs=51.6
Q ss_pred ecCChHHHHHHHHHHhcccc---cEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCCCchhhHHHH
Q 048655 116 LFSTEEDILTIRWKELYPFI---TQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPFVEEAYQ 192 (288)
Q Consensus 116 lfs~ElDlLEIRL~EL~dvV---D~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w~~E~~q 192 (288)
...|+-+.|+-=|..|...- ...|||....|= .- .+-.+++..-.++|.++.-+. .+ -...
T Consensus 12 p~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d----~t---~~~~~~~~~~~~~i~~i~~~n------~G---~~~a 75 (240)
T 3bcv_A 12 PIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPD----NC---PKICDDYAAQYPNIKVIHKKN------AG---LGMA 75 (240)
T ss_dssp EESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSS----SH---HHHHHHHHHHCSSEEEEECCC------CC---HHHH
T ss_pred ecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCc----CH---HHHHHHHHhhCCCEEEEECCC------CC---hHHH
Confidence 33455577776676664432 267777766541 11 111233332234666664211 11 2334
Q ss_pred HHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 193 RVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 193 Rn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
||. +++. ..+|.|++.|.|.++.|+.|..|.
T Consensus 76 ~N~---g~~~---a~g~~i~~lD~Dd~~~~~~l~~l~ 106 (240)
T 3bcv_A 76 CNS---GLDV---ATGEYVAFCDSDDYVDSDMYMTMY 106 (240)
T ss_dssp HHH---HHHH---CCSSEEEECCTTCCCCTTHHHHHH
T ss_pred HHH---HHHH---cCCCEEEEECCCCcCCHHHHHHHH
Confidence 453 4443 368999999999999999988553
No 4
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=43.61 E-value=23 Score=32.64 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=34.7
Q ss_pred ccccEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCc
Q 048655 133 PFITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGR 178 (288)
Q Consensus 133 dvVD~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~ 178 (288)
.+-|..++|-|...|.|..-++.......=.++|++||-|..-+.+
T Consensus 57 n~ydr~~vvn~s~nf~gg~~n~~~~~a~~f~~kykskiyylftdir 102 (351)
T 1jg7_A 57 NDYDRLIVVNSSINFFGGKPNLAILSAQKFMAKYKSKIYYLFTDIR 102 (351)
T ss_dssp GGCSEEEEECCCCCCCTTSCCHHHHHHHHHHHHCCSCEEEEECCTT
T ss_pred cccceEEEEeceeeccCCCccHHHHHHHHHHHHhhceeEEEEeecc
Confidence 3568999999999999997777643332223899999999886654
No 5
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=39.05 E-value=1.4e+02 Score=30.06 Aligned_cols=105 Identities=10% Similarity=-0.095 Sum_probs=62.5
Q ss_pred CcEEEEEecCChHHHHHHHHHHhcc------cccEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCC
Q 048655 109 RRVFDAVLFSTEEDILTIRWKELYP------FITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKG 182 (288)
Q Consensus 109 RkIyD~flfs~ElDlLEIRL~EL~d------vVD~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~ 182 (288)
.+|-=++.-.|+-+.|+-=|..|.. .++..|||+...|-... ...+.+. .+...++|.++..+.
T Consensus 180 pkVSVVIptYN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~--~~~~~e~---~~~~~~~I~vI~~~N----- 249 (657)
T 4fix_A 180 ANIAVGIPTFNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRD--HPDFPAA---AARLGSRLSIHDQPN----- 249 (657)
T ss_dssp CCEEEECCBSSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGG--STTHHHH---HHHHGGGEEEEECCC-----
T ss_pred CeEEEEEEecCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccc--hHHHHHH---HHhcCCCEEEEECCC-----
Confidence 3554344445777888888888766 56689999987762110 0111111 122335787776431
Q ss_pred CCchhhHHHHHHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 183 ENPFVEEAYQRVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 183 ~~~w~~E~~qRn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
.++ +..+|.-.+..... ...|.|++.|-|-++.++.|..|-
T Consensus 250 -~G~---a~a~N~Gl~~A~g~--~~~dyIlfLD~D~~~~pd~L~~ll 290 (657)
T 4fix_A 250 -LGG---SGGYSRVMYEALKN--TDCQQILFMDDDIRLEPDSILRVL 290 (657)
T ss_dssp -CHH---HHHHHHHHHHHHHH--CCCSEEEEECSSEEECTHHHHHHH
T ss_pred -CCH---HHHHHHHHHHHHhc--CCCCEEEEECCCCccChhHHHHHH
Confidence 122 33556544332211 267999999999999999988653
No 6
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=38.28 E-value=1.2e+02 Score=29.31 Aligned_cols=97 Identities=15% Similarity=0.099 Sum_probs=56.5
Q ss_pred EEEE-ecCChHHHHHHHHHHhccc----ccEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCCCch
Q 048655 112 FDAV-LFSTEEDILTIRWKELYPF----ITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPF 186 (288)
Q Consensus 112 yD~f-lfs~ElDlLEIRL~EL~dv----VD~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w 186 (288)
+.++ ...||-+.|+-=|..|... -...|||..+.|= . ..+-.+++.. ..+|.++..+.. +.
T Consensus 95 vsviIp~~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d----~---t~~~~~~~~~-~~~i~~i~~~~~------~~ 160 (625)
T 2z86_A 95 LSIVIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKE----N---IEEIVREFES-LLNIKYVRQKDY------GY 160 (625)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSS----C---HHHHHHTTTT-TSCEEEEEECCC------SC
T ss_pred EEEEEecCCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCch----h---HHHHHHHhhh-cCCeEEEEeCCC------Cc
Confidence 4444 4457778888778777544 4567888866551 1 1112223321 246777664321 10
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 187 VEEAYQRVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 187 ~~E~~qRn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
.-...|| .+++.+ .+|+|++.|.|.++.++.|..+.
T Consensus 161 -g~~~a~N---~g~~~a---~g~~v~~lD~D~~~~~~~l~~~~ 196 (625)
T 2z86_A 161 -QLCAVRN---LGLRAA---KYNYVAILDCDMAPNPLWVQSYM 196 (625)
T ss_dssp -CHHHHHH---HHHHHC---CSSEEEEECTTEEECTTHHHHHH
T ss_pred -chhHHHH---HHHHhC---CcCEEEEECCCCCCCHHHHHHHH
Confidence 0122334 344433 68999999999999999988544
No 7
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=32.55 E-value=57 Score=30.53 Aligned_cols=101 Identities=14% Similarity=0.006 Sum_probs=52.6
Q ss_pred CcEEEEEecCChHHHHHHHHHHh------cccccEEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCC
Q 048655 109 RRVFDAVLFSTEEDILTIRWKEL------YPFITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKG 182 (288)
Q Consensus 109 RkIyD~flfs~ElDlLEIRL~EL------~dvVD~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~ 182 (288)
.+|-=++...||-+.|+-=|..+ ++..+..|||..+.|= | ..+..+.+..+++...+--...+.
T Consensus 94 p~vSVVIP~yNe~~~l~~~l~sl~~~l~~~~~~~EIIVVDDgStD-~---------T~~i~~~~~~~v~~~~~~~i~~~~ 163 (387)
T 3f1y_A 94 LTVSAVLPSRNVADTVGGIIDEIHALNERAPLIDQILVVDADSED-G---------TAGVAASHGAEVYSENELMSGYGD 163 (387)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHHHHHHSCCCSEEEEEECSCSS-S---------HHHHHHHTTCEEEEGGGTTGGGCS
T ss_pred CeEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCeEEEEEcCcCCc-c---------HHHHHHHhCchhcccceeEecCCc
Confidence 44544555566656555544444 2356789999987761 1 111122333443322110000001
Q ss_pred CCchhhHHHHHHHHHHHHHHcCCCCCcEEEeeCCCcC-CCHHHHHHH
Q 048655 183 ENPFVEEAYQRVALDQLLRIAGIEDDDLLIMSDVDEI-PSAHTINLL 228 (288)
Q Consensus 183 ~~~w~~E~~qRn~l~~~lr~~~~~~dDlIIvSDvDEI-P~~~tl~~L 228 (288)
..+. -.++..+++. ..+|+|++.|.|.+ +.|+.|..|
T Consensus 164 n~G~------g~A~n~G~~~---A~gd~i~~lDaD~~~~~p~~L~~l 201 (387)
T 3f1y_A 164 AHGK------GDAMWRALSV---TRGDLVLYIDADTRDFRPQLAYGV 201 (387)
T ss_dssp CCSH------HHHHHHHTTT---CCSSEEEECCTTCSSCCTHHHHTT
T ss_pred cCCH------HHHHHHHHHh---cCCCEEEEEcCCCCcCCHHHHHHH
Confidence 1111 1233334432 36899999999999 899988754
No 8
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=30.67 E-value=1.5e+02 Score=27.43 Aligned_cols=96 Identities=13% Similarity=0.052 Sum_probs=55.1
Q ss_pred EEecCChH-HHHHHHHHHhcccc-----cEEEEEEeCCCccCCCccccchhchhcc-cccCCCEEEEEeCCccCCCCCch
Q 048655 114 AVLFSTEE-DILTIRWKELYPFI-----TQFVLLESNSTFTGLPKPLFFASNRHKF-KFVEPRLTYGMIGGRFKKGENPF 186 (288)
Q Consensus 114 ~flfs~El-DlLEIRL~EL~dvV-----D~FVIvESn~TFtG~pKpL~f~~n~~rF-~~~~~KIiy~~l~~~~~~~~~~w 186 (288)
++.+.||- +.|+-=|+.|.... ...|||....|-... .+..+++ +.+..+|.++..+... +.
T Consensus 34 IIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t------~~~l~~~~~~~~~~v~vi~~~~n~-----G~ 102 (472)
T 1xhb_A 34 VIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFL------KRPLESYVKKLKVPVHVIRMEQRS-----GL 102 (472)
T ss_dssp EEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGG------THHHHHHHHSSSSCEEEEECSSCC-----CH
T ss_pred EEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHH------HHHHHHHHHHCCCcEEEEECCCCC-----Ch
Confidence 34455665 77776666664422 378889876662100 1112233 2233378877764211 11
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHHH
Q 048655 187 VEEAYQRVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLLR 229 (288)
Q Consensus 187 ~~E~~qRn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~Lr 229 (288)
... +..+++.+ .+|+|++.|.|-++.++.|..|-
T Consensus 103 ---~~a---~N~g~~~A---~gd~i~flD~D~~~~p~~L~~ll 136 (472)
T 1xhb_A 103 ---IRA---RLKGAAVS---RGQVITFLDAHCECTAGWLEPLL 136 (472)
T ss_dssp ---HHH---HHHHHHHC---CSSEEEEEESSEEECTTCHHHHH
T ss_pred ---HHH---HHHHHHhc---cCCeEEEECCCeEeCccHHHHHH
Confidence 122 33345443 58999999999999999887543
No 9
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=29.23 E-value=1e+02 Score=21.75 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=28.5
Q ss_pred HcCCCCCcEEEeeCCCcCCC---HHHHHHHHhcCCCCcceEEEe
Q 048655 202 IAGIEDDDLLIMSDVDEIPS---AHTINLLRWCDDIPSILHLQL 242 (288)
Q Consensus 202 ~~~~~~dDlIIvSDvDEIP~---~~tl~~Lr~cdg~p~~~~l~l 242 (288)
.+|++++|+|+--|=-.|-+ .+..+.|+.+. +.+.|..
T Consensus 41 ~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~---~~v~l~v 81 (87)
T 2pa1_A 41 DADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP---SPLRLQL 81 (87)
T ss_dssp HTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC---SSEEEEE
T ss_pred HcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC---CeEEEEE
Confidence 47999999999888767766 67777888653 5666654
No 10
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=27.10 E-value=1.5e+02 Score=28.68 Aligned_cols=95 Identities=14% Similarity=0.069 Sum_probs=54.1
Q ss_pred EEecCCh-HHHHHHHHHHhccc--cc---EEEEEEeCCCccCCCccccchhchhcccccCCCEEEEEeCCccCCCCCchh
Q 048655 114 AVLFSTE-EDILTIRWKELYPF--IT---QFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYGMIGGRFKKGENPFV 187 (288)
Q Consensus 114 ~flfs~E-lDlLEIRL~EL~dv--VD---~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~~l~~~~~~~~~~w~ 187 (288)
++.+.|| ++.|+--|+.+... -+ ..|||+.+.|=. - ..+..+++..-.++|.++..+.. .+.
T Consensus 117 IIp~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~----t--l~~~l~~~~~~~~~v~vi~~~~n-----~G~- 184 (570)
T 2d7i_A 117 IIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDRE----H--LKKPLEDYMALFPSVRILRTKKR-----EGL- 184 (570)
T ss_dssp EEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCG----G--GTHHHHHHHTTSTTEEEEECSSC-----CCH-
T ss_pred EEEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcH----H--HHHHHHHHHHhCCeEEEEECCCC-----CCH-
Confidence 3445565 58887777666432 22 788888766611 1 01122333222267888775421 111
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcEEEeeCCCcCCCHHHHHHH
Q 048655 188 EEAYQRVALDQLLRIAGIEDDDLLIMSDVDEIPSAHTINLL 228 (288)
Q Consensus 188 ~E~~qRn~l~~~lr~~~~~~dDlIIvSDvDEIP~~~tl~~L 228 (288)
...| ..+++.+ .+|+|++.|.|-++.+..|..|
T Consensus 185 --~~A~---N~G~~~A---~gd~i~fLD~D~~~~p~~L~~l 217 (570)
T 2d7i_A 185 --IRTR---MLGASVA---TGDVITFLDSHCEANVNWLPPL 217 (570)
T ss_dssp --HHHH---HHHHHHC---CSSEEEECCSSEEECTTCSHHH
T ss_pred --HHHH---HHHHHhc---CCCEEEEEcCCccccccHHHHH
Confidence 1223 3344433 6899999999999999877643
No 11
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=25.29 E-value=1.1e+02 Score=22.66 Aligned_cols=47 Identities=6% Similarity=0.138 Sum_probs=30.3
Q ss_pred cCCCCCcEEEeeCC---CcCCCHHHHHHHHhcCCCCcceEEEeeeeeeeEEee
Q 048655 203 AGIEDDDLLIMSDV---DEIPSAHTINLLRWCDDIPSILHLQLRNYLYSFEYF 252 (288)
Q Consensus 203 ~~~~~dDlIIvSDv---DEIP~~~tl~~Lr~cdg~p~~~~l~lr~y~YsF~~~ 252 (288)
+|++.+|+|+--|= ......+++.+++.+. ..+.|....+++...+.
T Consensus 52 ~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~---~~v~l~v~~~~~~~~~~ 101 (103)
T 2dc2_A 52 GGLHVGDAILAVNGVNLRDTKHKEAVTILSQQR---GEIEFEVVYVALEHHHH 101 (103)
T ss_dssp TCCCSSEEEEEETTEESTTSCHHHHHHHHHHCC---SEEEEEEEECC------
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC---CcEEEEEEecCCcchhh
Confidence 48999999998653 3345578888898765 37788777666555443
No 12
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=25.06 E-value=1.8e+02 Score=25.73 Aligned_cols=100 Identities=19% Similarity=0.186 Sum_probs=52.7
Q ss_pred CcEEEEEecCChHHHHHHHHHHhcc----cccEEEEEEeCCCccCCCccccchhchhcccccCCCEEEE-E-eCCccCCC
Q 048655 109 RRVFDAVLFSTEEDILTIRWKELYP----FITQFVLLESNSTFTGLPKPLFFASNRHKFKFVEPRLTYG-M-IGGRFKKG 182 (288)
Q Consensus 109 RkIyD~flfs~ElDlLEIRL~EL~d----vVD~FVIvESn~TFtG~pKpL~f~~n~~rF~~~~~KIiy~-~-l~~~~~~~ 182 (288)
.+|-=++...||-+.|+-=|..+.. ..+.+|||..+.|= + ..+..+.+..++... . +... +.
T Consensus 48 ~~vSViIp~yN~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D-~---------t~~~~~~~~~~~~~~~~~~~~~--~~ 115 (329)
T 3ckj_A 48 RTISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTD-D---------TEIRAVAAGARVVSREQALPEV--PI 115 (329)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCS-S---------HHHHHHHTTCEEEEHHHHCTTS--CC
T ss_pred CcEEEEEeeCCCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCc-h---------HHHHHHHhhhhhccceeeeccC--CC
Confidence 3443344445666666666666544 35789999977761 1 111122233332211 0 1000 11
Q ss_pred CCchhhHHHHHHHHHHHHHHcCCCCCcEEEeeCCCcC-CCHHHHHHHH
Q 048655 183 ENPFVEEAYQRVALDQLLRIAGIEDDDLLIMSDVDEI-PSAHTINLLR 229 (288)
Q Consensus 183 ~~~w~~E~~qRn~l~~~lr~~~~~~dDlIIvSDvDEI-P~~~tl~~Lr 229 (288)
..+. . .++..+++.+ .+|+|++.|.|.+ +.|+.|..+-
T Consensus 116 n~G~---~---~a~n~g~~~a---~gd~i~~lD~D~~~~~p~~l~~l~ 154 (329)
T 3ckj_A 116 RPGK---G---EALWRSLAAS---RGDIVVFVDSDLINPHPMFVPWLV 154 (329)
T ss_dssp CCSH---H---HHHHHHHHHC---CCSEEEECCTTEESCCTTHHHHHH
T ss_pred CCCH---H---HHHHHHHHhC---CCCEEEEECCCCCCcChHHHHHHH
Confidence 1111 1 2333455543 6899999999999 8999888644
No 13
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=25.06 E-value=1.3e+02 Score=21.09 Aligned_cols=39 Identities=15% Similarity=0.325 Sum_probs=27.7
Q ss_pred cCCCCCcEEEeeCCCcCCC---HHHHHHHHhcCCCCcceEEEe
Q 048655 203 AGIEDDDLLIMSDVDEIPS---AHTINLLRWCDDIPSILHLQL 242 (288)
Q Consensus 203 ~~~~~dDlIIvSDvDEIP~---~~tl~~Lr~cdg~p~~~~l~l 242 (288)
+|++++|+|+--|=-.|-+ .+.+..|+.+. -.+.+.|..
T Consensus 41 aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~g~~v~l~v 82 (88)
T 3bpu_A 41 RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESP-KGSEVTLLV 82 (88)
T ss_dssp TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSC-TTCEEEEEE
T ss_pred hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCC-CCCEEEEEE
Confidence 5899999999888777776 57777888643 234555543
No 14
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=24.07 E-value=1.4e+02 Score=21.84 Aligned_cols=39 Identities=21% Similarity=0.457 Sum_probs=28.4
Q ss_pred cCCCCCcEEEeeCCCcCCC---HHHHHHHHhcCCCCcceEEEe
Q 048655 203 AGIEDDDLLIMSDVDEIPS---AHTINLLRWCDDIPSILHLQL 242 (288)
Q Consensus 203 ~~~~~dDlIIvSDvDEIP~---~~tl~~Lr~cdg~p~~~~l~l 242 (288)
+|++++|+|+--|=-.|-+ .+.+++|+.+. -...+.|..
T Consensus 46 aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~-~g~~v~l~v 87 (96)
T 1ujv_A 46 PGLCEGDLIVEINQQNVQNLSHTEVVDILKDCP-IGSETSLII 87 (96)
T ss_dssp TTCCSSCEEEEETTEECSSCCHHHHHHHHHHSC-TTSEEEEEE
T ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CCCEEEEEE
Confidence 7899999999887655654 68888999864 234566654
No 15
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=23.34 E-value=1.4e+02 Score=21.48 Aligned_cols=38 Identities=13% Similarity=0.321 Sum_probs=28.6
Q ss_pred HcCCCCCcEEEeeCCCcCCC---HHHHHHHHhcCCCCcceEEEe
Q 048655 202 IAGIEDDDLLIMSDVDEIPS---AHTINLLRWCDDIPSILHLQL 242 (288)
Q Consensus 202 ~~~~~~dDlIIvSDvDEIP~---~~tl~~Lr~cdg~p~~~~l~l 242 (288)
.+|++++|+|+--|=-.|-+ .+....|+.. +..+.|..
T Consensus 52 ~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~---~~~v~l~v 92 (96)
T 2ego_A 52 LAGLTPGDTIASVNGLNVEGIRHREIVDIIKAS---GNVLRLET 92 (96)
T ss_dssp HTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT---TTEEEEEE
T ss_pred HcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC---CCeEEEEE
Confidence 47899999999888777766 6778888875 34566553
No 16
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=20.86 E-value=57 Score=26.09 Aligned_cols=33 Identities=6% Similarity=0.021 Sum_probs=25.8
Q ss_pred CCCCCCCCCCCcceEeccCccHHhHHHhcCccc
Q 048655 72 LWESPPKPFIKIPHYYHENVTMERLCKLHGWGI 104 (288)
Q Consensus 72 ~W~~p~~p~~~iP~~y~~~~~~~~~c~~hgw~~ 104 (288)
+|-+..-|...+--.+.+...+-..|+.|||.-
T Consensus 51 GWtsS~D~~~qv~L~F~skE~AiayAek~G~~y 83 (108)
T 2lju_A 51 NWTGSHDTKQQVCLSFTTRELAIAYAVAHKIDY 83 (108)
T ss_dssp CCSSSCCCCCCSCEEESSHHHHHHHHHHTTCEE
T ss_pred cccCCCCccccceEecCCHHHHHHHHHHcCCEE
Confidence 466666677777777888888889999999953
Done!