Query 048656
Match_columns 115
No_of_seqs 106 out of 1028
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 20:31:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jrn_A AT1G72930 protein; TIR 100.0 2.3E-43 7.9E-48 248.9 7.4 112 1-112 15-127 (176)
2 3ozi_A L6TR; plant TIR domain, 100.0 1.8E-42 6.2E-47 248.7 7.4 114 1-114 42-157 (204)
3 3h16_A TIR protein; bacteria T 100.0 4.1E-33 1.4E-37 192.2 1.8 106 1-107 27-133 (154)
4 3ub2_A TOLL/interleukin-1 rece 99.9 7E-25 2.4E-29 150.3 2.4 95 1-97 17-114 (146)
5 1fyx_A TOLL-like receptor 2; b 99.9 1.7E-23 5.7E-28 143.6 0.4 94 1-96 12-111 (149)
6 1t3g_A X-linked interleukin-1 99.9 3.4E-22 1.2E-26 138.5 5.4 89 1-89 9-111 (159)
7 2js7_A Myeloid differentiation 99.9 1.8E-22 6.1E-27 140.1 3.1 89 1-91 23-116 (160)
8 2j67_A TOLL like receptor 10; 99.8 1.3E-22 4.5E-27 143.0 2.2 92 1-94 42-139 (178)
9 3j0a_A TOLL-like receptor 5; m 99.6 6.1E-16 2.1E-20 128.2 5.0 87 1-89 677-771 (844)
10 3hyn_A Putative signal transdu 96.7 0.0023 8E-08 44.9 4.9 92 8-102 31-132 (189)
11 1eiw_A Hypothetical protein MT 95.8 0.0041 1.4E-07 40.1 2.2 41 43-87 34-74 (111)
12 2f62_A Nucleoside 2-deoxyribos 93.5 0.39 1.3E-05 32.6 7.3 69 9-77 27-99 (161)
13 4fyk_A Deoxyribonucleoside 5'- 87.3 3.3 0.00011 27.8 7.3 72 1-76 11-94 (152)
14 3ehd_A Uncharacterized conserv 82.2 7.8 0.00027 26.1 7.4 67 9-76 20-97 (162)
15 2jug_A TUBC protein; docking d 81.5 1.7 6E-05 25.5 3.5 38 12-49 8-49 (78)
16 2khz_A C-MYC-responsive protei 80.2 5.1 0.00017 26.8 5.9 63 10-76 29-103 (165)
17 1s2d_A Purine trans deoxyribos 72.6 13 0.00046 24.9 6.4 67 9-76 23-109 (167)
18 2d00_A V-type ATP synthase sub 61.8 26 0.00089 21.8 6.4 45 14-61 14-58 (109)
19 1f8y_A Nucleoside 2-deoxyribos 55.8 29 0.00099 23.0 5.4 69 8-77 18-107 (157)
20 1byr_A Protein (endonuclease); 54.6 37 0.0013 21.3 6.0 28 32-59 10-37 (155)
21 2efe_B Small GTP-binding prote 52.7 36 0.0012 21.3 5.5 26 33-58 69-95 (181)
22 3aon_B V-type sodium ATPase su 50.3 13 0.00043 23.6 2.8 51 15-71 14-64 (115)
23 3pid_A UDP-glucose 6-dehydroge 49.0 17 0.0006 28.1 3.9 49 4-52 347-400 (432)
24 4h3d_A 3-dehydroquinate dehydr 48.6 23 0.00078 25.3 4.3 66 14-80 104-169 (258)
25 1v95_A Nuclear receptor coacti 48.6 46 0.0016 21.5 5.4 49 5-54 18-67 (130)
26 1z0j_A RAB-22, RAS-related pro 47.1 47 0.0016 20.4 5.3 22 40-61 71-92 (170)
27 1bax_A M-PMV MA, M-PMV matrix 45.8 11 0.00038 23.3 1.9 18 8-25 9-26 (94)
28 2fg5_A RAB-22B, RAS-related pr 45.6 45 0.0015 21.5 5.1 29 33-61 80-109 (192)
29 4a7p_A UDP-glucose dehydrogena 44.2 27 0.00091 27.0 4.3 61 4-64 337-406 (446)
30 2i4r_A V-type ATP synthase sub 43.0 48 0.0016 20.4 4.6 44 15-61 21-65 (102)
31 3ojo_A CAP5O; rossmann fold, c 41.2 38 0.0013 26.1 4.7 60 4-64 330-392 (431)
32 1dlj_A UDP-glucose dehydrogena 40.5 39 0.0013 25.4 4.7 50 4-53 324-379 (402)
33 1r2q_A RAS-related protein RAB 39.0 65 0.0022 19.6 5.8 28 33-60 63-91 (170)
34 2xij_A Methylmalonyl-COA mutas 38.7 1.4E+02 0.0047 25.1 7.8 80 4-93 617-697 (762)
35 1zbd_A Rabphilin-3A; G protein 38.1 79 0.0027 20.3 5.7 21 40-60 73-93 (203)
36 2hup_A RAS-related protein RAB 37.0 80 0.0027 20.5 5.4 28 33-60 86-114 (201)
37 3g79_A NDP-N-acetyl-D-galactos 35.9 36 0.0012 26.6 3.8 53 4-56 368-423 (478)
38 1req_A Methylmalonyl-COA mutas 35.8 1.2E+02 0.0043 25.1 7.2 80 4-93 609-689 (727)
39 3kbq_A Protein TA0487; structu 34.9 38 0.0013 22.8 3.4 47 6-52 20-67 (172)
40 3zs7_A Pyridoxal kinase; trans 32.4 42 0.0014 24.2 3.5 21 3-23 53-73 (300)
41 2fu5_C RAS-related protein RAB 31.9 81 0.0028 19.7 4.6 19 43-61 76-94 (183)
42 2lpy_A Matrix protein P10; GAG 31.7 25 0.00087 22.7 2.0 21 7-27 7-27 (124)
43 3ikl_A DNA polymerase subunit 31.1 44 0.0015 26.2 3.6 25 5-29 361-387 (459)
44 3pzy_A MOG; ssgcid, seattle st 31.1 44 0.0015 22.1 3.2 47 6-52 24-71 (164)
45 3h74_A Pyridoxal kinase; PSI-I 30.9 70 0.0024 22.7 4.5 63 9-74 59-129 (282)
46 2wem_A Glutaredoxin-related pr 30.8 38 0.0013 21.0 2.7 31 34-66 6-36 (118)
47 2h1v_A Ferrochelatase; rossman 30.1 1.4E+02 0.0048 21.6 6.1 65 10-76 63-136 (310)
48 3clv_A RAB5 protein, putative; 29.9 1E+02 0.0036 19.2 6.4 21 40-60 109-129 (208)
49 1ccw_A Protein (glutamate muta 29.7 1.1E+02 0.0037 19.3 5.5 68 15-89 24-91 (137)
50 1egw_A MADS box transcription 29.5 11 0.00037 22.3 -0.1 31 45-75 37-67 (77)
51 3n75_A LDC, lysine decarboxyla 27.4 1E+02 0.0036 25.3 5.4 69 9-92 17-85 (715)
52 1pp9_G Ubiquinol-cytochrome C 26.7 67 0.0023 19.0 3.1 29 86-114 14-42 (81)
53 2yan_A Glutaredoxin-3; oxidore 26.7 29 0.00099 20.6 1.6 28 38-67 7-34 (105)
54 2yc2_C IFT27, small RAB-relate 25.9 1.1E+02 0.0038 19.4 4.5 19 43-61 92-110 (208)
55 2p5s_A RAS and EF-hand domain 25.5 1.4E+02 0.0047 19.1 6.1 27 33-59 85-112 (199)
56 1sc3_B Interleukin-1 beta conv 25.2 26 0.0009 20.9 1.1 22 1-22 24-45 (88)
57 2ov6_A V-type ATP synthase sub 25.0 70 0.0024 19.4 3.1 44 15-61 12-56 (101)
58 2i4l_A Proline-tRNA ligase; al 24.4 45 0.0015 25.6 2.6 23 8-30 381-403 (458)
59 1y5e_A Molybdenum cofactor bio 24.0 54 0.0018 21.6 2.6 48 6-56 28-79 (169)
60 3vtf_A UDP-glucose 6-dehydroge 23.3 1E+02 0.0035 23.9 4.4 53 4-56 348-409 (444)
61 3gg2_A Sugar dehydrogenase, UD 23.3 69 0.0024 24.6 3.4 61 4-64 333-403 (450)
62 4ggi_A UDP-2,3-diacylglucosami 23.0 1.3E+02 0.0043 21.6 4.6 51 4-58 223-280 (283)
63 1mkz_A Molybdenum cofactor bio 22.9 80 0.0027 20.8 3.3 48 6-56 25-76 (172)
64 1evl_A Threonyl-tRNA synthetas 22.9 1.7E+02 0.0057 21.8 5.5 23 8-30 311-333 (401)
65 2pjk_A 178AA long hypothetical 22.7 80 0.0027 21.0 3.3 51 5-56 36-88 (178)
66 2is8_A Molybdopterin biosynthe 22.7 71 0.0024 20.8 3.0 48 6-56 18-69 (164)
67 3ff5_A PEX14P, peroxisomal bio 22.5 53 0.0018 18.0 1.9 11 38-48 44-54 (54)
68 2q3e_A UDP-glucose 6-dehydroge 22.4 68 0.0023 24.5 3.3 55 4-58 344-419 (467)
69 1nj1_A PROR, proline-tRNA synt 22.4 50 0.0017 25.9 2.5 24 7-30 331-354 (501)
70 4hvc_A Bifunctional glutamate/ 22.4 58 0.002 25.8 2.9 31 8-38 331-363 (519)
71 2yvq_A Carbamoyl-phosphate syn 22.3 1.1E+02 0.0037 19.5 3.8 21 39-59 86-106 (143)
72 2pp6_A Gifsy-2 prophage ATP-bi 22.2 28 0.00095 21.8 0.8 22 40-61 43-64 (102)
73 1wik_A Thioredoxin-like protei 22.0 41 0.0014 20.1 1.6 17 39-57 6-22 (109)
74 2hxs_A RAB-26, RAS-related pro 21.9 1.5E+02 0.005 18.2 4.7 22 41-62 73-94 (178)
75 3p57_A Myocyte-specific enhanc 21.8 19 0.00063 22.0 -0.1 32 45-76 37-68 (90)
76 2oe3_A Thioredoxin-3; electron 21.8 63 0.0022 19.1 2.5 19 39-57 21-39 (114)
77 3c5c_A RAS-like protein 12; GD 21.7 90 0.0031 19.9 3.4 19 41-59 85-103 (187)
78 1mv8_A GMD, GDP-mannose 6-dehy 21.4 60 0.002 24.6 2.7 54 4-57 328-400 (436)
79 3t5x_B 26S proteasome complex 21.4 67 0.0023 18.6 2.3 22 3-24 45-66 (70)
80 3rfq_A Pterin-4-alpha-carbinol 21.1 90 0.0031 21.1 3.3 21 7-27 47-67 (185)
81 1qf6_A THRRS, threonyl-tRNA sy 20.5 70 0.0024 25.8 3.1 47 8-58 552-599 (642)
82 2pw6_A Uncharacterized protein 20.2 1.5E+02 0.0051 21.2 4.5 68 8-77 95-163 (271)
No 1
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=2.3e-43 Score=248.92 Aligned_cols=112 Identities=44% Similarity=0.775 Sum_probs=96.7
Q ss_pred CccccccccHHHHHHHHHhhCCCceeeeCC-ccCCCcccHHHHHHhhhcceeeEEeecCCcCChhHHHHHHHHHHhhhcC
Q 048656 1 FRGEDICDNFLSHLVVALHRKNIETFVDEE-LTRGDEISPAFLKAIEESKISVKIFSKNYASSKWCLDELVKILKCHKKN 79 (115)
Q Consensus 1 fr~~d~r~~Fv~~L~~aL~~~gi~~f~d~~-l~~G~~i~~~i~~~I~~s~~~Ivv~S~~~~~S~wc~~EL~~~~~~~~~~ 79 (115)
|||+|+|++|++||+++|+++||++|+|++ +++|+.|.++|.+||++|+++|+|||+||++|+||++||.+|++|.+++
T Consensus 15 frg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL~~i~~~~~~~ 94 (176)
T 3jrn_A 15 FRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKG 94 (176)
T ss_dssp ECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHHHHHHHHHHTT
T ss_pred CcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHHHHHHhhhccC
Confidence 799999999999999999999999999988 9999999999999999999999999999999999999999999999889
Q ss_pred CCEEEEEEEecCCcccccccchHHHHHHHHHHH
Q 048656 80 GQVVIPVFYNVDPSDVRNQKRSFKDAFVKHDKQ 112 (115)
Q Consensus 80 ~~~viPIfy~v~p~~v~~~~g~~~~~f~~~~~~ 112 (115)
+++|+||||+|+|++|++|+|.||++|.+++++
T Consensus 95 ~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~ 127 (176)
T 3jrn_A 95 SITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR 127 (176)
T ss_dssp SCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT
T ss_pred CCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc
Confidence 999999999999999999999999999999876
No 2
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.8e-42 Score=248.74 Aligned_cols=114 Identities=46% Similarity=0.850 Sum_probs=109.4
Q ss_pred CccccccccHHHHHHHHHhhCCCceeeeCC-ccCCCcccHHHHHHhhhcceeeEEeecCCcCChhHHHHHHHHHHhhhc-
Q 048656 1 FRGEDICDNFLSHLVVALHRKNIETFVDEE-LTRGDEISPAFLKAIEESKISVKIFSKNYASSKWCLDELVKILKCHKK- 78 (115)
Q Consensus 1 fr~~d~r~~Fv~~L~~aL~~~gi~~f~d~~-l~~G~~i~~~i~~~I~~s~~~Ivv~S~~~~~S~wc~~EL~~~~~~~~~- 78 (115)
|||+|+|++|++||+++|+++||++|+|++ +++|+.|.++|.+||++|+++|+|||+||++|.||++||.+|++|+++
T Consensus 42 frg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl~EL~~I~e~~~~~ 121 (204)
T 3ozi_A 42 FRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEED 121 (204)
T ss_dssp ECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHHHHHHHHHHHHHHC
T ss_pred ccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999987 999999999999999999999999999999999999999999999864
Q ss_pred CCCEEEEEEEecCCcccccccchHHHHHHHHHHHhC
Q 048656 79 NGQVVIPVFYNVDPSDVRNQKRSFKDAFVKHDKQFN 114 (115)
Q Consensus 79 ~~~~viPIfy~v~p~~v~~~~g~~~~~f~~~~~~~~ 114 (115)
++++|+||||+|+|++|++|+|.||++|.++++++.
T Consensus 122 ~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~ 157 (204)
T 3ozi_A 122 PRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD 157 (204)
T ss_dssp TTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC
T ss_pred CCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC
Confidence 679999999999999999999999999999988753
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.97 E-value=4.1e-33 Score=192.15 Aligned_cols=106 Identities=19% Similarity=0.373 Sum_probs=100.4
Q ss_pred CccccccccHHHHHHHHHhhCCCceeeeCC-ccCCCcccHHHHHHhhhcceeeEEeecCCcCChhHHHHHHHHHHhhhcC
Q 048656 1 FRGEDICDNFLSHLVVALHRKNIETFVDEE-LTRGDEISPAFLKAIEESKISVKIFSKNYASSKWCLDELVKILKCHKKN 79 (115)
Q Consensus 1 fr~~d~r~~Fv~~L~~aL~~~gi~~f~d~~-l~~G~~i~~~i~~~I~~s~~~Ivv~S~~~~~S~wc~~EL~~~~~~~~~~ 79 (115)
|+|+| +..|+.+|+.+|+++|+++|+|++ +.+|+.|.++|.++|++|+++|+|+|++|++|.||++||..++++..++
T Consensus 27 y~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~El~~~~~~~~~~ 105 (154)
T 3h16_A 27 HAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSG 105 (154)
T ss_dssp EEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHHHHHHTCCCTTS
T ss_pred CcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHHHHHHHHHHhcC
Confidence 67888 778999999999999999999998 9999999999999999999999999999999999999999999987777
Q ss_pred CCEEEEEEEecCCcccccccchHHHHHH
Q 048656 80 GQVVIPVFYNVDPSDVRNQKRSFKDAFV 107 (115)
Q Consensus 80 ~~~viPIfy~v~p~~v~~~~g~~~~~f~ 107 (115)
+++|+||||+++|++|++|+|.|+++|.
T Consensus 106 ~~~iiPV~~~v~p~~v~~~~~~~~~~~~ 133 (154)
T 3h16_A 106 RSRILPIWHKVSKDEVASFSPTMADKLA 133 (154)
T ss_dssp CCCEEEEEESCCTGGGTTTCCCCCSSCC
T ss_pred CCEEEEEEecCCHHHHhhCCccHHHHHh
Confidence 8899999999999999999999987664
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.90 E-value=7e-25 Score=150.27 Aligned_cols=95 Identities=18% Similarity=0.327 Sum_probs=70.6
Q ss_pred CccccccccHHHHHHHHHhh--CCCceeeeCC-ccCCCcccHHHHHHhhhcceeeEEeecCCcCChhHHHHHHHHHHhhh
Q 048656 1 FRGEDICDNFLSHLVVALHR--KNIETFVDEE-LTRGDEISPAFLKAIEESKISVKIFSKNYASSKWCLDELVKILKCHK 77 (115)
Q Consensus 1 fr~~d~r~~Fv~~L~~aL~~--~gi~~f~d~~-l~~G~~i~~~i~~~I~~s~~~Ivv~S~~~~~S~wc~~EL~~~~~~~~ 77 (115)
|+++|++ |+.+|+.+|++ .|+++|++++ +.+|+.+.++|.++|++|+.+|+|+|++|++|.||+.|+..|+.+..
T Consensus 17 y~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc~~El~~al~~~~ 94 (146)
T 3ub2_A 17 HSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWCKYQMLQALTEAP 94 (146)
T ss_dssp CCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHHHHHHHHHHHTSS
T ss_pred CChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHHHHHHHHHHHHHh
Confidence 6788876 68999999999 5999999998 99999999999999999999999999999999999999999998863
Q ss_pred cCCCEEEEEEEecCCccccc
Q 048656 78 KNGQVVIPVFYNVDPSDVRN 97 (115)
Q Consensus 78 ~~~~~viPIfy~v~p~~v~~ 97 (115)
.+..+||||+|+|+++++..
T Consensus 95 ~~~~~vIpv~~~v~~~~lp~ 114 (146)
T 3ub2_A 95 GAEGCTIPLLSGLSRAAYPP 114 (146)
T ss_dssp SSSSEEEEEECSCCGGGSCG
T ss_pred hcCCcEEEEEcCCChhhCCH
Confidence 33447889999999777654
No 5
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.86 E-value=1.7e-23 Score=143.60 Aligned_cols=94 Identities=18% Similarity=0.323 Sum_probs=82.7
Q ss_pred CccccccccHHHH-HHHHHhhC--CCceeeeCC-ccCCCcccHHHHHHhhhcceeeEEeecCCcCChhHHHHHHHHHHh-
Q 048656 1 FRGEDICDNFLSH-LVVALHRK--NIETFVDEE-LTRGDEISPAFLKAIEESKISVKIFSKNYASSKWCLDELVKILKC- 75 (115)
Q Consensus 1 fr~~d~r~~Fv~~-L~~aL~~~--gi~~f~d~~-l~~G~~i~~~i~~~I~~s~~~Ivv~S~~~~~S~wc~~EL~~~~~~- 75 (115)
|+|+|+ .||.+ |+.+|++. |+++|+|++ +.+|+++.++|.++|++|+.+|+|+|++|++|.||+.|+..|+.+
T Consensus 12 y~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~~El~~a~~~~ 89 (149)
T 1fyx_A 12 YSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXKYELDFSHFRL 89 (149)
T ss_dssp CCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHHHHSCCSCCTT
T ss_pred CCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHHHHHHHHHHHH
Confidence 678888 79997 99999987 999999998 999999999999999999999999999999999999999998853
Q ss_pred hhcCCCEEEEEEEe-cCCcccc
Q 048656 76 HKKNGQVVIPVFYN-VDPSDVR 96 (115)
Q Consensus 76 ~~~~~~~viPIfy~-v~p~~v~ 96 (115)
.++++.+||||+|+ +.+.++.
T Consensus 90 ~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 90 FDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp CGGGTTCCEEEESSCCCTTTSC
T ss_pred HhcCCCEEEEEEecCCChhhcC
Confidence 45567889999984 5554443
No 6
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.85 E-value=3.4e-22 Score=138.52 Aligned_cols=89 Identities=17% Similarity=0.261 Sum_probs=80.3
Q ss_pred Cccccc---------cccHHHHHHH-HHh-hCCCceeeeCC-ccCCCcccHHHHHHhhhcceeeEEeecCCc-CChhHHH
Q 048656 1 FRGEDI---------CDNFLSHLVV-ALH-RKNIETFVDEE-LTRGDEISPAFLKAIEESKISVKIFSKNYA-SSKWCLD 67 (115)
Q Consensus 1 fr~~d~---------r~~Fv~~L~~-aL~-~~gi~~f~d~~-l~~G~~i~~~i~~~I~~s~~~Ivv~S~~~~-~S~wc~~ 67 (115)
|+++|+ +..||.||+. .|+ +.|+++|+|++ +.+|+.+.++|.++|++|+.+|+|+|++|+ .|.||+.
T Consensus 9 y~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~~~S~wc~~ 88 (159)
T 1t3g_A 9 YTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYVVRRGWSIF 88 (159)
T ss_dssp CCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHHHTTTTHHH
T ss_pred CccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchhhcChHHHH
Confidence 577786 5789999776 599 79999999998 999999999999999999999999999997 9999999
Q ss_pred HHHHHHHhh-hcCCCEEEEEEEe
Q 048656 68 ELVKILKCH-KKNGQVVIPVFYN 89 (115)
Q Consensus 68 EL~~~~~~~-~~~~~~viPIfy~ 89 (115)
|+..|+.+. .+++.+||||+|.
T Consensus 89 El~~a~~~~~~~~~~~vI~I~~~ 111 (159)
T 1t3g_A 89 ELETRLRNMLVTGEIKVILIECS 111 (159)
T ss_dssp HHSHHHHHHHHTTSSEEEEEECS
T ss_pred HHHHHHHHHHhcCCCEEEEEEec
Confidence 999999876 6678899999986
No 7
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.85 E-value=1.8e-22 Score=140.07 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=79.7
Q ss_pred CccccccccHHHHHHHHHhhC--CCceeeeCC-ccCCCcccHHHHHHhh-hcceeeEEeecCCcCChhHHHHHHHHHHhh
Q 048656 1 FRGEDICDNFLSHLVVALHRK--NIETFVDEE-LTRGDEISPAFLKAIE-ESKISVKIFSKNYASSKWCLDELVKILKCH 76 (115)
Q Consensus 1 fr~~d~r~~Fv~~L~~aL~~~--gi~~f~d~~-l~~G~~i~~~i~~~I~-~s~~~Ivv~S~~~~~S~wc~~EL~~~~~~~ 76 (115)
|+++| ..||.+|+.+|++. |+++|+|++ +.+|+.+.++|.++|+ +|+.+|+|+|++|++|.||+.|+..|+++.
T Consensus 23 ys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc~~El~~a~~~~ 100 (160)
T 2js7_A 23 YCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKECDFQTKFALSLS 100 (160)
T ss_dssp CCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHHHHHHHHHHHHC
T ss_pred ccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHHHHHHHHHHHHH
Confidence 57778 57999999999985 699999998 9999999999999999 799999999999999999999999999875
Q ss_pred -hcCCCEEEEEEEecC
Q 048656 77 -KKNGQVVIPVFYNVD 91 (115)
Q Consensus 77 -~~~~~~viPIfy~v~ 91 (115)
++++.+||||+|+.-
T Consensus 101 ~~~~~~~vIpV~~~~~ 116 (160)
T 2js7_A 101 PGAHQKRLIPIKYKAM 116 (160)
T ss_dssp TTHHHHTEEEEESSCC
T ss_pred HccCCCEEEEEEEccc
Confidence 444578999999754
No 8
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.85 E-value=1.3e-22 Score=142.98 Aligned_cols=92 Identities=21% Similarity=0.336 Sum_probs=77.0
Q ss_pred CccccccccHHHH-HHHHHhh--CCCceeeeCC-ccCCCcccHHHHHHhhhcceeeEEeecCCcCChhHHHHHHHHHHhh
Q 048656 1 FRGEDICDNFLSH-LVVALHR--KNIETFVDEE-LTRGDEISPAFLKAIEESKISVKIFSKNYASSKWCLDELVKILKCH 76 (115)
Q Consensus 1 fr~~d~r~~Fv~~-L~~aL~~--~gi~~f~d~~-l~~G~~i~~~i~~~I~~s~~~Ivv~S~~~~~S~wc~~EL~~~~~~~ 76 (115)
|+|+|+ .||.+ |+.+|++ .|+++|+|++ +.+|+++.++|.++|++|+.+|+|+|++|++|.||+.|+..|+.+.
T Consensus 42 ys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~wc~~El~~a~~~~ 119 (178)
T 2j67_A 42 YSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEWCHYEFYFAHHNL 119 (178)
T ss_dssp CCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTGGGTHHHHTTCC-
T ss_pred CCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccchHHHHHHHHHHHH
Confidence 678886 79975 9999998 8999999998 9999999999999999999999999999999999999999998643
Q ss_pred -hcCCCEEEEEEEe-cCCcc
Q 048656 77 -KKNGQVVIPVFYN-VDPSD 94 (115)
Q Consensus 77 -~~~~~~viPIfy~-v~p~~ 94 (115)
++++++||||+|+ +.+.+
T Consensus 120 ~~~~~~~vIpV~~~~i~~~~ 139 (178)
T 2j67_A 120 FHENSDHIILILLEPIPFYC 139 (178)
T ss_dssp ------CEEEEESSCCCGGG
T ss_pred HhcCCCEEEEEEecCCChHH
Confidence 5567899999985 44433
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.59 E-value=6.1e-16 Score=128.21 Aligned_cols=87 Identities=18% Similarity=0.338 Sum_probs=77.2
Q ss_pred CccccccccHH-HHHHHHHhh-----CCCceeeeCC-ccCCCcccHHHHHHhhhcceeeEEeecCCcCChhHHHHHHHHH
Q 048656 1 FRGEDICDNFL-SHLVVALHR-----KNIETFVDEE-LTRGDEISPAFLKAIEESKISVKIFSKNYASSKWCLDELVKIL 73 (115)
Q Consensus 1 fr~~d~r~~Fv-~~L~~aL~~-----~gi~~f~d~~-l~~G~~i~~~i~~~I~~s~~~Ivv~S~~~~~S~wc~~EL~~~~ 73 (115)
|+++|. .|| ..|...|+. .|+++|++++ +.+|+.+.++|.++|++||..|+|+|++|+.|.||..|+..|+
T Consensus 677 y~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s~wc~~e~~~a~ 754 (844)
T 3j0a_A 677 FSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRDGWCLEAFSYAQ 754 (844)
T ss_dssp CCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHHTSTTHHHHHHH
T ss_pred eeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccChHHHHHHHHHH
Confidence 455555 577 679999985 5899999999 9999999999999999999999999999999999999999998
Q ss_pred Hhh-hcCCCEEEEEEEe
Q 048656 74 KCH-KKNGQVVIPVFYN 89 (115)
Q Consensus 74 ~~~-~~~~~~viPIfy~ 89 (115)
.+. +++..+||||+|+
T Consensus 755 ~~~~~~~~~~~i~i~~~ 771 (844)
T 3j0a_A 755 GRCLSDLNSALIMVVVG 771 (844)
T ss_dssp SCCCCSSCTTEEEEESS
T ss_pred HHHHHhcCCcEEEEEec
Confidence 765 6677899999996
No 10
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.70 E-value=0.0023 Score=44.89 Aligned_cols=92 Identities=20% Similarity=0.216 Sum_probs=60.2
Q ss_pred ccHHHHHHHHHhhCCCceeeeCC-c----cC----CCcccHHHHHHhhhcceeeEEeecCCcCChhHHHHHHHHHHhhhc
Q 048656 8 DNFLSHLVVALHRKNIETFVDEE-L----TR----GDEISPAFLKAIEESKISVKIFSKNYASSKWCLDELVKILKCHKK 78 (115)
Q Consensus 8 ~~Fv~~L~~aL~~~gi~~f~d~~-l----~~----G~~i~~~i~~~I~~s~~~Ivv~S~~~~~S~wc~~EL~~~~~~~~~ 78 (115)
....+.|..--....+-.|.|.. . .- -..|...+.+.|+.|..+|+++|++...|.|...|++.|+..
T Consensus 31 i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~~--- 107 (189)
T 3hyn_A 31 FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIGT--- 107 (189)
T ss_dssp HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTTT---
T ss_pred HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHh---
Confidence 33444554444445555666653 2 22 345777888999999999999999999999999999998722
Q ss_pred CCCEEEEEEEecC-CcccccccchH
Q 048656 79 NGQVVIPVFYNVD-PSDVRNQKRSF 102 (115)
Q Consensus 79 ~~~~viPIfy~v~-p~~v~~~~g~~ 102 (115)
.+..||-|.-+-+ .+++....|.|
T Consensus 108 ~~~PII~Vy~~~~~~~~i~~~~g~~ 132 (189)
T 3hyn_A 108 KGLPVIVIYPDYDKKSDIVDSNGNF 132 (189)
T ss_dssp TCCCEEEEETTCCSGGGTBCTTSCB
T ss_pred cCCcEEEEECCccccchhhhccccc
Confidence 2457777763322 22444444443
No 11
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=95.84 E-value=0.0041 Score=40.14 Aligned_cols=41 Identities=12% Similarity=0.005 Sum_probs=33.8
Q ss_pred HHhhhcceeeEEeecCCcCChhHHHHHHHHHHhhhcCCCEEEEEE
Q 048656 43 KAIEESKISVKIFSKNYASSKWCLDELVKILKCHKKNGQVVIPVF 87 (115)
Q Consensus 43 ~~I~~s~~~Ivv~S~~~~~S~wc~~EL~~~~~~~~~~~~~viPIf 87 (115)
..|+.|+++|++.++...+|+||..|+..|.+. +..|+-|.
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~----gkpIigV~ 74 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLARKS----SKPIITVR 74 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTT----TCCEEEEC
T ss_pred CccccCCEEEEEeCCCcCCChHHHHHHHHHHHc----CCCEEEEE
Confidence 568999999999999999999999999887553 34565554
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=93.47 E-value=0.39 Score=32.59 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=48.8
Q ss_pred cHHHHHHHHHhhCCCceeeeCC--ccCCCcccHHHHHHhhhcceeeEEeec--CCcCChhHHHHHHHHHHhhh
Q 048656 9 NFLSHLVVALHRKNIETFVDEE--LTRGDEISPAFLKAIEESKISVKIFSK--NYASSKWCLDELVKILKCHK 77 (115)
Q Consensus 9 ~Fv~~L~~aL~~~gi~~f~d~~--l~~G~~i~~~i~~~I~~s~~~Ivv~S~--~~~~S~wc~~EL~~~~~~~~ 77 (115)
.+...+.+.|++.|+.+|.-.. ......+...=.++|++|+++|.+++| .-..+.=...|+.++....+
T Consensus 27 ~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgK 99 (161)
T 2f62_A 27 SYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNK 99 (161)
T ss_dssp HHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCC
Confidence 5778999999999998887433 212222333336899999999999996 33344457889999877644
No 13
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=87.29 E-value=3.3 Score=27.78 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=48.1
Q ss_pred CccccccccHHHHHHHHHhhCCCceeeeC---C-c-cCCCc-------ccHHHHHHhhhcceeeEEeecCCcCChhHHHH
Q 048656 1 FRGEDICDNFLSHLVVALHRKNIETFVDE---E-L-TRGDE-------ISPAFLKAIEESKISVKIFSKNYASSKWCLDE 68 (115)
Q Consensus 1 fr~~d~r~~Fv~~L~~aL~~~gi~~f~d~---~-l-~~G~~-------i~~~i~~~I~~s~~~Ivv~S~~~~~S~wc~~E 68 (115)
++|.+-+..+...+.+.|++.| .|+... . + ..|+. +...-.++|++|+++|.+++ ..|.=-..|
T Consensus 11 ~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~d~Gt~~E 86 (152)
T 4fyk_A 11 IRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QPSLGVGYE 86 (152)
T ss_dssp STTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SCCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CCCCCHHHH
Confidence 3554445578899999999999 665321 1 1 12221 33344578999999999998 556777889
Q ss_pred HHHHHHhh
Q 048656 69 LVKILKCH 76 (115)
Q Consensus 69 L~~~~~~~ 76 (115)
+..|....
T Consensus 87 iG~A~alg 94 (152)
T 4fyk_A 87 LGRAVALG 94 (152)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99987654
No 14
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=82.18 E-value=7.8 Score=26.11 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=47.9
Q ss_pred cHHHHHHHHHhhC--CCceeeeCC--c---cCCCcccHHH----HHHhhhcceeeEEeecCCcCChhHHHHHHHHHHhh
Q 048656 9 NFLSHLVVALHRK--NIETFVDEE--L---TRGDEISPAF----LKAIEESKISVKIFSKNYASSKWCLDELVKILKCH 76 (115)
Q Consensus 9 ~Fv~~L~~aL~~~--gi~~f~d~~--l---~~G~~i~~~i----~~~I~~s~~~Ivv~S~~~~~S~wc~~EL~~~~~~~ 76 (115)
.+...+.++|++. |+.+|.-.. . .++..|...| .++|++|+++|.++. ....+.....|+..|....
T Consensus 20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~g 97 (162)
T 3ehd_A 20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAKG 97 (162)
T ss_dssp HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHCC
Confidence 3677899999875 888886543 1 2233444444 457999999999995 3446788899999987654
No 15
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=81.50 E-value=1.7 Score=25.50 Aligned_cols=38 Identities=13% Similarity=0.278 Sum_probs=28.4
Q ss_pred HHHHHHHhhCCCceeeeCC-cc---CCCcccHHHHHHhhhcc
Q 048656 12 SHLVVALHRKNIETFVDEE-LT---RGDEISPAFLKAIEESK 49 (115)
Q Consensus 12 ~~L~~aL~~~gi~~f~d~~-l~---~G~~i~~~i~~~I~~s~ 49 (115)
..|...|+++||..|.+.. ++ +-..+.+++...+.+.+
T Consensus 8 ~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K 49 (78)
T 2jug_A 8 GALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR 49 (78)
T ss_dssp HHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHHH
Confidence 3567999999999999987 54 33457777777776644
No 16
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=80.22 E-value=5.1 Score=26.77 Aligned_cols=63 Identities=16% Similarity=0.167 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhCCCceeeeCCc-----cCCCc---ccHHH----HHHhhhcceeeEEeecCCcCChhHHHHHHHHHHhh
Q 048656 10 FLSHLVVALHRKNIETFVDEEL-----TRGDE---ISPAF----LKAIEESKISVKIFSKNYASSKWCLDELVKILKCH 76 (115)
Q Consensus 10 Fv~~L~~aL~~~gi~~f~d~~l-----~~G~~---i~~~i----~~~I~~s~~~Ivv~S~~~~~S~wc~~EL~~~~~~~ 76 (115)
....+.+.|++.| .++.+... ..|.. ....| .+.|++|+++|++++ ..+.=+..|+..+....
T Consensus 29 ~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~---~~d~Gt~~EiGyA~alg 103 (165)
T 2khz_A 29 LYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT---QPSLGVGYELGRAVALG 103 (165)
T ss_dssp HHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS---SCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC---CCCCCHHHHHHHHHHCC
Confidence 4578889999999 77654321 12211 11222 478999999999997 45666888999987654
No 17
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=72.56 E-value=13 Score=24.93 Aligned_cols=67 Identities=12% Similarity=0.049 Sum_probs=46.0
Q ss_pred cHHHHHHHHHhhC--CCceeeeCC--c--------cCC----CcccHHH----HHHhhhcceeeEEeecCCcCChhHHHH
Q 048656 9 NFLSHLVVALHRK--NIETFVDEE--L--------TRG----DEISPAF----LKAIEESKISVKIFSKNYASSKWCLDE 68 (115)
Q Consensus 9 ~Fv~~L~~aL~~~--gi~~f~d~~--l--------~~G----~~i~~~i----~~~I~~s~~~Ivv~S~~~~~S~wc~~E 68 (115)
.....+.+.|++. |+.+|.-.. . ..+ ..|...| .++|++|+++|.++...-. +.=...|
T Consensus 23 ~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vVA~ldg~~~-D~GTa~E 101 (167)
T 1s2d_A 23 ERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVFLYDMDQL-DDGSAFX 101 (167)
T ss_dssp HHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEEEEEESSSC-CHHHHHH
T ss_pred HHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEEEECCCCCC-CCCceee
Confidence 4778899999999 888876432 2 111 1122333 4689999999999997554 4557789
Q ss_pred HHHHHHhh
Q 048656 69 LVKILKCH 76 (115)
Q Consensus 69 L~~~~~~~ 76 (115)
+..|....
T Consensus 102 iGyA~alg 109 (167)
T 1s2d_A 102 IGFMRAMH 109 (167)
T ss_dssp HHHHHHTT
T ss_pred hhhHhhCC
Confidence 99887654
No 18
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=61.84 E-value=26 Score=21.78 Aligned_cols=45 Identities=7% Similarity=0.116 Sum_probs=32.5
Q ss_pred HHHHHhhCCCceeeeCCccCCCcccHHHHHHhhhcceeeEEeecCCcC
Q 048656 14 LVVALHRKNIETFVDEELTRGDEISPAFLKAIEESKISVKIFSKNYAS 61 (115)
Q Consensus 14 L~~aL~~~gi~~f~d~~l~~G~~i~~~i~~~I~~s~~~Ivv~S~~~~~ 61 (115)
....++-.|+.+|... ..+.+.+.+.+.+++-++.|++++++.++
T Consensus 14 tv~GFrLaGi~~~~v~---~~ee~~~~~~~l~~~~digIIlIte~~a~ 58 (109)
T 2d00_A 14 TAQGFRLAGLEGYGAS---SAEEAQSLLETLVERGGYALVAVDEALLP 58 (109)
T ss_dssp HHHHHHHTTSEEEECS---SHHHHHHHHHHHHHHCCCSEEEEETTTCS
T ss_pred HHHHHHHcCCeEEEeC---CHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 3456778899888642 23445555666666779999999999988
No 19
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=55.79 E-value=29 Score=22.95 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=45.5
Q ss_pred ccHHHHHHHHHhhCCC----ceeeeCC--c--------cC---CCcccHHH----HHHhhhcceeeEEeecCCcCChhHH
Q 048656 8 DNFLSHLVVALHRKNI----ETFVDEE--L--------TR---GDEISPAF----LKAIEESKISVKIFSKNYASSKWCL 66 (115)
Q Consensus 8 ~~Fv~~L~~aL~~~gi----~~f~d~~--l--------~~---G~~i~~~i----~~~I~~s~~~Ivv~S~~~~~S~wc~ 66 (115)
......+.++|+..|. .+|.-.. . .. +..|...| .++|++|+++|.++...- .+.=..
T Consensus 18 ~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vvA~ldg~~-~D~GT~ 96 (157)
T 1f8y_A 18 NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIMLGVYIPDE-EDVGLG 96 (157)
T ss_dssp HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEEEECCGGG-CCHHHH
T ss_pred HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEEEEEcCCCC-CCccHH
Confidence 3477889999999985 5665332 2 11 11122233 468899999999998543 345577
Q ss_pred HHHHHHHHhhh
Q 048656 67 DELVKILKCHK 77 (115)
Q Consensus 67 ~EL~~~~~~~~ 77 (115)
.|+..+....+
T Consensus 97 ~EiGyA~A~gk 107 (157)
T 1f8y_A 97 MELGYALSQGK 107 (157)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 89999877644
No 20
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=54.56 E-value=37 Score=21.27 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=22.7
Q ss_pred cCCCcccHHHHHHhhhcceeeEEeecCC
Q 048656 32 TRGDEISPAFLKAIEESKISVKIFSKNY 59 (115)
Q Consensus 32 ~~G~~i~~~i~~~I~~s~~~Ivv~S~~~ 59 (115)
.|++.+.+.+.+.|++++..|.+.++.+
T Consensus 10 ~p~~~~~~~~~~~i~~A~~~I~i~~~~~ 37 (155)
T 1byr_A 10 SPEGSARVLVLSAIDSAKTSIRMMAYSF 37 (155)
T ss_dssp ETTTHHHHHHHHHHHHCSSEEEEEESSB
T ss_pred CCCCcHHHHHHHHHHHHhhEEEEEEEEe
Confidence 4566777888889999998888888766
No 21
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=52.73 E-value=36 Score=21.32 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=17.7
Q ss_pred CCCc-ccHHHHHHhhhcceeeEEeecC
Q 048656 33 RGDE-ISPAFLKAIEESKISVKIFSKN 58 (115)
Q Consensus 33 ~G~~-i~~~i~~~I~~s~~~Ivv~S~~ 58 (115)
+|.. ........++.++.+|+|++..
T Consensus 69 ~G~~~~~~~~~~~~~~~d~~i~v~d~~ 95 (181)
T 2efe_B 69 AGQERYHSLAPMYYRGAAAAIIVFDVT 95 (181)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETT
T ss_pred CCChhhhhhhHHHhccCCEEEEEEECC
Confidence 5533 3333455678899999999965
No 22
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=50.31 E-value=13 Score=23.60 Aligned_cols=51 Identities=10% Similarity=0.098 Sum_probs=32.9
Q ss_pred HHHHhhCCCceeeeCCccCCCcccHHHHHHhhhcceeeEEeecCCcCChhHHHHHHH
Q 048656 15 VVALHRKNIETFVDEELTRGDEISPAFLKAIEESKISVKIFSKNYASSKWCLDELVK 71 (115)
Q Consensus 15 ~~aL~~~gi~~f~d~~l~~G~~i~~~i~~~I~~s~~~Ivv~S~~~~~S~wc~~EL~~ 71 (115)
...++-.|+.+|... .-+.+.+.+.+.+++ ++.|++++.+.++. +.+++..
T Consensus 14 v~GFrLaGie~~~v~---~~ee~~~~~~~l~~~-digIIlIte~ia~~--i~~~i~~ 64 (115)
T 3aon_B 14 VSPFRLFGFDVQHGT---TKTEIRKTIDEMAKN-EYGVIYITEQCANL--VPETIER 64 (115)
T ss_dssp HGGGGGGTCEEECCC---SHHHHHHHHHHHHHT-TEEEEEEEHHHHTT--CHHHHHH
T ss_pred HHHHHHcCCeEEEeC---CHHHHHHHHHHHHhc-CceEEEEeHHHHHH--hHHHHHH
Confidence 345667788887643 234445556666667 99999999998763 3344443
No 23
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*
Probab=48.95 E-value=17 Score=28.10 Aligned_cols=49 Identities=8% Similarity=0.184 Sum_probs=31.5
Q ss_pred ccccccHHHHHHHHHhhCCCceeeeCC-cc----CCCcccHHHHHHhhhcceee
Q 048656 4 EDICDNFLSHLVVALHRKNIETFVDEE-LT----RGDEISPAFLKAIEESKISV 52 (115)
Q Consensus 4 ~d~r~~Fv~~L~~aL~~~gi~~f~d~~-l~----~G~~i~~~i~~~I~~s~~~I 52 (115)
+|+|.+=+-.|.+.|.++|..+.+.|- .. .|..+...+.+++++|++.|
T Consensus 347 dD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~aD~iv 400 (432)
T 3pid_A 347 DNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEADVII 400 (432)
T ss_dssp -----CHHHHHHHHHHHTTCCEEEECTTCCSSEETTEEECCCHHHHHHHCSEEE
T ss_pred cchhcChHHHHHHHHHhcCCEEEEECCCCChhhcCCceEECCHHHHHhcCCEEE
Confidence 578888889999999999998776554 33 22233456678888898844
No 24
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=48.58 E-value=23 Score=25.35 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=36.0
Q ss_pred HHHHHhhCCCceeeeCCccCCCcccHHHHHHhhhcceeeEEeecCCcCChhHHHHHHHHHHhhhcCC
Q 048656 14 LVVALHRKNIETFVDEELTRGDEISPAFLKAIEESKISVKIFSKNYASSKWCLDELVKILKCHKKNG 80 (115)
Q Consensus 14 L~~aL~~~gi~~f~d~~l~~G~~i~~~i~~~I~~s~~~Ivv~S~~~~~S~wc~~EL~~~~~~~~~~~ 80 (115)
|+..+...|..-++|-++..++....++.+..+...+ -+|.|-+..+..|-.+|+...+..+...+
T Consensus 104 ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~-kiI~S~Hdf~~TP~~~el~~~~~~~~~~g 169 (258)
T 4h3d_A 104 LNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEV-KVIISNHDFNKTPKKEEIVSRLCRMQELG 169 (258)
T ss_dssp HHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTC-EEEEEEEESSCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCC-EEEEEEecCCCCCCHHHHHHHHHHHHHhC
Confidence 3344444454445555443333333444443444443 44666666666777788888877765444
No 25
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=48.57 E-value=46 Score=21.52 Aligned_cols=49 Identities=8% Similarity=-0.010 Sum_probs=33.3
Q ss_pred cccccHHHHHHHHHhhCCCceeeeCCccCCCcccHHHHHHh-hhcceeeEE
Q 048656 5 DICDNFLSHLVVALHRKNIETFVDEELTRGDEISPAFLKAI-EESKISVKI 54 (115)
Q Consensus 5 d~r~~Fv~~L~~aL~~~gi~~f~d~~l~~G~~i~~~i~~~I-~~s~~~Ivv 54 (115)
|....++..+.+.|...|+.+=+|.. ..++.+...|.++- .+..++|||
T Consensus 18 ~~~~~YA~~V~~~L~~~GiRvevD~~-r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 18 KQTKDYAESVGRKVRDLGMVVDLIFL-NTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp SGGGHHHHHHHHHHHTTTCCEEEEEC-TTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred cchHHHHHHHHHHHHHCCCEEEEecC-CCCCcHHHHHHHHHHcCCCEEEEE
Confidence 34567899999999999999988761 23666766665543 234445544
No 26
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=47.12 E-value=47 Score=20.41 Aligned_cols=22 Identities=5% Similarity=-0.031 Sum_probs=16.2
Q ss_pred HHHHHhhhcceeeEEeecCCcC
Q 048656 40 AFLKAIEESKISVKIFSKNYAS 61 (115)
Q Consensus 40 ~i~~~I~~s~~~Ivv~S~~~~~ 61 (115)
.....+..++.+|+|++.+-..
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~ 92 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEE 92 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHH
T ss_pred ccHhhCcCCCEEEEEEECcCHH
Confidence 3455678999999999976443
No 27
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=45.85 E-value=11 Score=23.30 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=16.9
Q ss_pred ccHHHHHHHHHhhCCCce
Q 048656 8 DNFLSHLVVALHRKNIET 25 (115)
Q Consensus 8 ~~Fv~~L~~aL~~~gi~~ 25 (115)
..|++.|...|.++||+|
T Consensus 9 q~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV 26 (94)
T ss_pred hHHHHHHHHHHHHcCeee
Confidence 579999999999999998
No 28
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=45.56 E-value=45 Score=21.47 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=19.0
Q ss_pred CCCc-ccHHHHHHhhhcceeeEEeecCCcC
Q 048656 33 RGDE-ISPAFLKAIEESKISVKIFSKNYAS 61 (115)
Q Consensus 33 ~G~~-i~~~i~~~I~~s~~~Ivv~S~~~~~ 61 (115)
+|.. ........+..++.+|+|++.+-..
T Consensus 80 ~G~~~~~~~~~~~~~~~d~iilV~d~~~~~ 109 (192)
T 2fg5_A 80 AGQERFHSLAPMYYRGSAAAVIVYDITKQD 109 (192)
T ss_dssp CCSGGGGGGTHHHHTTCSEEEEEEETTCTH
T ss_pred CCchhhHhhhHHhhccCCEEEEEEeCCCHH
Confidence 5532 3333456778999999999965443
No 29
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=44.19 E-value=27 Score=27.05 Aligned_cols=61 Identities=11% Similarity=0.059 Sum_probs=42.8
Q ss_pred ccccccHHHHHHHHHhhCCCceeeeCC-cc-------CCCcccHHHHHHhhhcceeeEEeecC-CcCChh
Q 048656 4 EDICDNFLSHLVVALHRKNIETFVDEE-LT-------RGDEISPAFLKAIEESKISVKIFSKN-YASSKW 64 (115)
Q Consensus 4 ~d~r~~Fv~~L~~aL~~~gi~~f~d~~-l~-------~G~~i~~~i~~~I~~s~~~Ivv~S~~-~~~S~w 64 (115)
+|+|.+=+-.|.+.|.+.|..+...|- .. ++-.+.+...+++++++..|+...-+ |.+-.|
T Consensus 337 dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~ 406 (446)
T 4a7p_A 337 DDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTEWDAFRALDL 406 (446)
T ss_dssp CCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSCCTTTTSCCH
T ss_pred cccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeCCHHhhcCCH
Confidence 588999899999999999998776553 21 24344455677899999876665543 544444
No 30
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=43.04 E-value=48 Score=20.35 Aligned_cols=44 Identities=16% Similarity=0.289 Sum_probs=30.4
Q ss_pred HHHHhhCCCceee-eCCccCCCcccHHHHHHhhhcceeeEEeecCCcC
Q 048656 15 VVALHRKNIETFV-DEELTRGDEISPAFLKAIEESKISVKIFSKNYAS 61 (115)
Q Consensus 15 ~~aL~~~gi~~f~-d~~l~~G~~i~~~i~~~I~~s~~~Ivv~S~~~~~ 61 (115)
...++-.|+..+. ... -+.+.+.+.+.+++.++.|++++.+.++
T Consensus 21 v~GFrLaGi~~~~~~~~---~ee~~~~~~~l~~~~digIIlIte~ia~ 65 (102)
T 2i4r_A 21 TIGFMLAGISDIYEVTS---DEEIVKAVEDVLKRDDVGVVIMKQEYLK 65 (102)
T ss_dssp HHHHHHTTCCCEEECCS---HHHHHHHHHHHHHCSSEEEEEEEGGGST
T ss_pred HHHHHHcCCCcccCCCC---HHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 4566778887766 221 2344555666666779999999999887
No 31
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*
Probab=41.17 E-value=38 Score=26.10 Aligned_cols=60 Identities=10% Similarity=0.172 Sum_probs=42.1
Q ss_pred ccccccHHHHHHHHHhhC-CCceeeeCC-ccCCCcccHHHHHHhhhcceeeEEeecC-CcCChh
Q 048656 4 EDICDNFLSHLVVALHRK-NIETFVDEE-LTRGDEISPAFLKAIEESKISVKIFSKN-YASSKW 64 (115)
Q Consensus 4 ~d~r~~Fv~~L~~aL~~~-gi~~f~d~~-l~~G~~i~~~i~~~I~~s~~~Ivv~S~~-~~~S~w 64 (115)
+|+|.+=+-.|.+.|.++ |..+...|- .... .....+.+++++++..|+...-+ |.+-.|
T Consensus 330 dD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~ 392 (431)
T 3ojo_A 330 DDIRESPAFDIYELLNQEPDIEVCAYDPHVELD-FVEHDMSHAVKDASLVLILSDHSEFKNLSD 392 (431)
T ss_dssp CCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT-TBCSTTHHHHTTCSEEEECSCCGGGTSCCG
T ss_pred cchhcChHHHHHHHHHhhcCCEEEEECCCcccc-cccCCHHHHHhCCCEEEEecCCHHHhccCH
Confidence 689999999999999999 998877654 4332 22344567889999876665533 444344
No 32
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*
Probab=40.51 E-value=39 Score=25.41 Aligned_cols=50 Identities=14% Similarity=0.273 Sum_probs=30.0
Q ss_pred ccccccHHHHHHHHHhhCCCceeeeCC-ccCCCc-----ccHHHHHHhhhcceeeE
Q 048656 4 EDICDNFLSHLVVALHRKNIETFVDEE-LTRGDE-----ISPAFLKAIEESKISVK 53 (115)
Q Consensus 4 ~d~r~~Fv~~L~~aL~~~gi~~f~d~~-l~~G~~-----i~~~i~~~I~~s~~~Iv 53 (115)
+|+|.+=+-.|.+.|.++|..+...|- +..... ......+++++++..|+
T Consensus 324 ~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 379 (402)
T 1dlj_A 324 DNFRESAIKDVIDILKSKDIKIIIYEPMLNKLESEDQSVLVNDLENFKKQANIIVT 379 (402)
T ss_dssp SCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCTTCCSEECCCHHHHHHHCSEEEC
T ss_pred cccccChHHHHHHHHHHCCCEEEEECCCCChHHHHcCCeecCCHHHHHhCCcEEEE
Confidence 467777777888888888877665443 332211 12234456667776555
No 33
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=39.02 E-value=65 Score=19.64 Aligned_cols=28 Identities=7% Similarity=0.115 Sum_probs=18.7
Q ss_pred CCCc-ccHHHHHHhhhcceeeEEeecCCc
Q 048656 33 RGDE-ISPAFLKAIEESKISVKIFSKNYA 60 (115)
Q Consensus 33 ~G~~-i~~~i~~~I~~s~~~Ivv~S~~~~ 60 (115)
+|.. ........+..++.+|+|++.+-.
T Consensus 63 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 91 (170)
T 1r2q_A 63 AGQERYHSLAPMYYRGAQAAIVVYDITNE 91 (170)
T ss_dssp CCSGGGGGGHHHHHTTCSEEEEEEETTCH
T ss_pred CCcHHhhhhhHHhccCCCEEEEEEECCCH
Confidence 5533 333345567889999999997643
No 34
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=38.74 E-value=1.4e+02 Score=25.07 Aligned_cols=80 Identities=16% Similarity=0.112 Sum_probs=49.0
Q ss_pred ccccccHHHHHHHHHhhCCCceeeeCCccCCCcccHHHHHHhhhcceeeEEeecCCcCChhHHHHHHHHHHhhhcCCCEE
Q 048656 4 EDICDNFLSHLVVALHRKNIETFVDEELTRGDEISPAFLKAIEESKISVKIFSKNYASSKWCLDELVKILKCHKKNGQVV 83 (115)
Q Consensus 4 ~d~r~~Fv~~L~~aL~~~gi~~f~d~~l~~G~~i~~~i~~~I~~s~~~Ivv~S~~~~~S~wc~~EL~~~~~~~~~~~~~v 83 (115)
.|.+..||.. .|+..|+.|-. - +.+.-.+++.++..+.+.-|+.+|.-...+.--+.++...++.. +..=
T Consensus 617 HdiG~~iVa~---~l~~~GfeVi~-l---G~~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~Lr~~---G~~d 686 (762)
T 2xij_A 617 HDRGAKVIAT---GFADLGFDVDI-G---PLFQTPREVAQQAVDADVHAVGVSTLAAGHKTLVPELIKELNSL---GRPD 686 (762)
T ss_dssp CCHHHHHHHH---HHHHTTCEEEE-C---CTTCCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHT---TCTT
T ss_pred hhHHHHHHHH---HHHhCCeEEee-C---CCCCCHHHHHHHHHHcCCCEEEEeeecHHHHHHHHHHHHHHHhc---CCCC
Confidence 4555666654 47789999854 1 12233568888999999999999977655433344555544443 2211
Q ss_pred EEEEEe-cCCc
Q 048656 84 IPVFYN-VDPS 93 (115)
Q Consensus 84 iPIfy~-v~p~ 93 (115)
+||+.+ +-|.
T Consensus 687 v~VivGG~~P~ 697 (762)
T 2xij_A 687 ILVMCGGVIPP 697 (762)
T ss_dssp SEEEEEESCCG
T ss_pred CEEEEeCCCCc
Confidence 677775 3444
No 35
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=38.09 E-value=79 Score=20.29 Aligned_cols=21 Identities=0% Similarity=-0.148 Sum_probs=15.5
Q ss_pred HHHHHhhhcceeeEEeecCCc
Q 048656 40 AFLKAIEESKISVKIFSKNYA 60 (115)
Q Consensus 40 ~i~~~I~~s~~~Ivv~S~~~~ 60 (115)
.....+..++.+|+|++..-.
T Consensus 73 ~~~~~~~~~d~ii~v~d~~~~ 93 (203)
T 1zbd_A 73 ITTAYYRGAMGFILMYDITNE 93 (203)
T ss_dssp HHHTTGGGCSEEEEEEETTCH
T ss_pred hHHHhhcCCCEEEEEEECcCH
Confidence 334567889999999996543
No 36
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=37.03 E-value=80 Score=20.51 Aligned_cols=28 Identities=7% Similarity=0.057 Sum_probs=18.6
Q ss_pred CCCc-ccHHHHHHhhhcceeeEEeecCCc
Q 048656 33 RGDE-ISPAFLKAIEESKISVKIFSKNYA 60 (115)
Q Consensus 33 ~G~~-i~~~i~~~I~~s~~~Ivv~S~~~~ 60 (115)
+|.. ........++.++.+|+|++..-.
T Consensus 86 ~G~~~~~~~~~~~~~~~d~iilv~D~~~~ 114 (201)
T 2hup_A 86 AGQERFRTITQSYYRSANGAILAYDITKR 114 (201)
T ss_dssp TTCGGGHHHHHHHHTTCSEEEEEEETTBH
T ss_pred CCcHhHHHHHHHHHhhCCEEEEEEECCCH
Confidence 5543 233345578899999999996543
No 37
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=35.86 E-value=36 Score=26.64 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=38.8
Q ss_pred ccccccHHHHHHHHHhhCCCceeeeCC-cc--CCCcccHHHHHHhhhcceeeEEee
Q 048656 4 EDICDNFLSHLVVALHRKNIETFVDEE-LT--RGDEISPAFLKAIEESKISVKIFS 56 (115)
Q Consensus 4 ~d~r~~Fv~~L~~aL~~~gi~~f~d~~-l~--~G~~i~~~i~~~I~~s~~~Ivv~S 56 (115)
+|+|.+=+-.|.+.|.++|..+...|- .. ++-.+...+.+++++++..|+...
T Consensus 368 dD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~ad~vvi~t~ 423 (478)
T 3g79_A 368 DDARNTPSEPYRDLCLKAGASVMVHDPYVVNYPGVEISDNLEEVVRNADAIVVLAG 423 (478)
T ss_dssp SCCTTCTHHHHHHHHHHHTCEEEEECSSCCCBTTBCEESCHHHHHTTCSEEEECSC
T ss_pred cchhcCcHHHHHHHHHHCCCEEEEECCCcccccCcceecCHHHHHhcCCEEEEecC
Confidence 588999999999999999998877554 32 222334456788899998666654
No 38
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=35.79 E-value=1.2e+02 Score=25.13 Aligned_cols=80 Identities=16% Similarity=0.033 Sum_probs=48.8
Q ss_pred ccccccHHHHHHHHHhhCCCceeeeCCccCCCcccHHHHHHhhhcceeeEEeecCCcCChhHHHHHHHHHHhhhcCCCEE
Q 048656 4 EDICDNFLSHLVVALHRKNIETFVDEELTRGDEISPAFLKAIEESKISVKIFSKNYASSKWCLDELVKILKCHKKNGQVV 83 (115)
Q Consensus 4 ~d~r~~Fv~~L~~aL~~~gi~~f~d~~l~~G~~i~~~i~~~I~~s~~~Ivv~S~~~~~S~wc~~EL~~~~~~~~~~~~~v 83 (115)
.|.++.||.. .|+..|+.|-. - +.+.-.+++.++..+.+.-|+.+|.-...+.--+.++...++.. +..=
T Consensus 609 HdiG~~iVa~---~l~~~GfeVi~-l---G~~v~~eeiv~aA~e~~adiVglSsl~~~~~~~~~~vi~~L~~~---G~~~ 678 (727)
T 1req_A 609 HDRGQKVIAT---AYADLGFDVDV-G---PLFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKL---GRPD 678 (727)
T ss_dssp CCHHHHHHHH---HHHHHTCEEEE-C---CTTBCHHHHHHHHHHTTCSEEEEEECSSCHHHHHHHHHHHHHHT---TCTT
T ss_pred hHHHHHHHHH---HHHhCCeEEEe-C---CCCCCHHHHHHHHHHcCCCEEEEeeecHhHHHHHHHHHHHHHhc---CCCC
Confidence 3555566644 47779998844 1 12233568888999999999999987665443445555554433 2211
Q ss_pred EEEEEe-cCCc
Q 048656 84 IPVFYN-VDPS 93 (115)
Q Consensus 84 iPIfy~-v~p~ 93 (115)
+||+.+ +-|.
T Consensus 679 i~VivGG~~p~ 689 (727)
T 1req_A 679 ILITVGGVIPE 689 (727)
T ss_dssp SEEEEEESCCG
T ss_pred CEEEEcCCCcc
Confidence 677775 3443
No 39
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=34.90 E-value=38 Score=22.82 Aligned_cols=47 Identities=21% Similarity=0.082 Sum_probs=27.4
Q ss_pred ccccHHHHHHHHHhhCCCceeeeCCccC-CCcccHHHHHHhhhcceee
Q 048656 6 ICDNFLSHLVVALHRKNIETFVDEELTR-GDEISPAFLKAIEESKISV 52 (115)
Q Consensus 6 ~r~~Fv~~L~~aL~~~gi~~f~d~~l~~-G~~i~~~i~~~I~~s~~~I 52 (115)
++++-...|.+.|++.|+.+..-.-+.- -+.+...+.+++++++++|
T Consensus 20 i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVi 67 (172)
T 3kbq_A 20 TVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVV 67 (172)
T ss_dssp SCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEE
T ss_pred EEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEE
Confidence 5566677889999999987654221111 1234445555566665543
No 40
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}
Probab=32.43 E-value=42 Score=24.18 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=11.0
Q ss_pred cccccccHHHHHHHHHhhCCC
Q 048656 3 GEDICDNFLSHLVVALHRKNI 23 (115)
Q Consensus 3 ~~d~r~~Fv~~L~~aL~~~gi 23 (115)
|.++-..-+..+.+.+...++
T Consensus 53 g~~~~~~ql~~~~~~~~~~~~ 73 (300)
T 3zs7_A 53 GHRMSLQEYDELMEGVRANNF 73 (300)
T ss_dssp EEECCHHHHHHHHHHHHHTTC
T ss_pred CCcCCHHHHHHHHHHHHhcCC
Confidence 444443344556666666554
No 41
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=31.91 E-value=81 Score=19.72 Aligned_cols=19 Identities=0% Similarity=-0.085 Sum_probs=14.5
Q ss_pred HHhhhcceeeEEeecCCcC
Q 048656 43 KAIEESKISVKIFSKNYAS 61 (115)
Q Consensus 43 ~~I~~s~~~Ivv~S~~~~~ 61 (115)
..++.++.+|+|++..-..
T Consensus 76 ~~~~~~d~~i~v~d~~~~~ 94 (183)
T 2fu5_C 76 AYYRGAMGIMLVYDITNEK 94 (183)
T ss_dssp TTTTTCSEEEEEEETTCHH
T ss_pred HHHhcCCEEEEEEECcCHH
Confidence 4567899999999976543
No 42
>2lpy_A Matrix protein P10; GAG, myristoylated, myristate, viral protein; HET: MYR; NMR {Mason-pfizer monkey virus}
Probab=31.73 E-value=25 Score=22.72 Aligned_cols=21 Identities=14% Similarity=0.328 Sum_probs=17.7
Q ss_pred cccHHHHHHHHHhhCCCceee
Q 048656 7 CDNFLSHLVVALHRKNIETFV 27 (115)
Q Consensus 7 r~~Fv~~L~~aL~~~gi~~f~ 27 (115)
...|++.|...|++.|++|-.
T Consensus 7 ~~~fi~~Lk~~LK~rGvkV~~ 27 (124)
T 2lpy_A 7 HERYVEQLKQALKTRGVKVKY 27 (124)
T ss_dssp HHHHHHHHHHHHHTTTCCCCH
T ss_pred HHHHHHHHHHHHHHCCeeecH
Confidence 357999999999999998654
No 43
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=31.10 E-value=44 Score=26.19 Aligned_cols=25 Identities=16% Similarity=0.022 Sum_probs=20.5
Q ss_pred cccccHHHHHHHHHhhCCCcee--eeC
Q 048656 5 DICDNFLSHLVVALHRKNIETF--VDE 29 (115)
Q Consensus 5 d~r~~Fv~~L~~aL~~~gi~~f--~d~ 29 (115)
+.-...+..|++.|++.||.+. +|+
T Consensus 361 e~~~~~A~~L~~~Lr~~GIrV~~d~Dd 387 (459)
T 3ikl_A 361 LELRQVCQGLFNELLENGISVWPGYLE 387 (459)
T ss_dssp TTHHHHHHHHHHHHHHTSCCEECGGGS
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeecC
Confidence 3345678899999999999999 666
No 44
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=31.06 E-value=44 Score=22.06 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=25.5
Q ss_pred ccccHHHHHHHHHhhCCCceeeeCCccCCCcccHHHHHHhh-hcceee
Q 048656 6 ICDNFLSHLVVALHRKNIETFVDEELTRGDEISPAFLKAIE-ESKISV 52 (115)
Q Consensus 6 ~r~~Fv~~L~~aL~~~gi~~f~d~~l~~G~~i~~~i~~~I~-~s~~~I 52 (115)
++++....|.+.|++.|+.+..-.-+.-.+.+...+.++++ +++++|
T Consensus 24 i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd~~i~~al~~a~~~~~DlVi 71 (164)
T 3pzy_A 24 YEDRCGPIITEWLAQQGFSSAQPEVVADGSPVGEALRKAIDDDVDVIL 71 (164)
T ss_dssp --CCHHHHHHHHHHHTTCEECCCEEECSSHHHHHHHHHHHHTTCSEEE
T ss_pred eeeHHHHHHHHHHHHCCCEEEEEEEeCCHHHHHHHHHHHHhCCCCEEE
Confidence 45666677889999999875432212111344455555554 455433
No 45
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*
Probab=30.87 E-value=70 Score=22.70 Aligned_cols=63 Identities=10% Similarity=0.172 Sum_probs=33.4
Q ss_pred cHHHHHHHHHhhCCCceeeeCCccCC----CcccHHHHHHhhhcceeeEEeecCCcCC-h-hH--HHHHHHHHH
Q 048656 9 NFLSHLVVALHRKNIETFVDEELTRG----DEISPAFLKAIEESKISVKIFSKNYASS-K-WC--LDELVKILK 74 (115)
Q Consensus 9 ~Fv~~L~~aL~~~gi~~f~d~~l~~G----~~i~~~i~~~I~~s~~~Ivv~S~~~~~S-~-wc--~~EL~~~~~ 74 (115)
.++..+.+++...++.+=- ++-| ....+.+.+.+++.+-..+|+.|++..+ . |- ..|...++.
T Consensus 59 ~~~~~~~~~~~~~d~~~da---ik~G~l~s~~~i~~v~~~l~~~~~~~vv~DPv~~~~g~l~~l~~~~~~~~l~ 129 (282)
T 3h74_A 59 TWLPQVFAHWTRAQLHFDQ---ALIGYVGSVALCQQITTYLEQQTLSLLVVDPVLGDLGQLYQGFDQDYVAAMR 129 (282)
T ss_dssp TTHHHHHHHHHHTTCCCSE---EEECCCCSHHHHHHHHHHHHHSCCSEEEECCCCEETTEECTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCE---EEECCCCCHHHHHHHHHHHHHCCCCcEEEcCeeecCCCCCCCCCHHHHHHHH
Confidence 4566666666544442111 3333 2334455566666655678889988852 3 54 245544443
No 46
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=30.84 E-value=38 Score=21.05 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=16.5
Q ss_pred CCcccHHHHHHhhhcceeeEEeecCCcCChhHH
Q 048656 34 GDEISPAFLKAIEESKISVKIFSKNYASSKWCL 66 (115)
Q Consensus 34 G~~i~~~i~~~I~~s~~~Ivv~S~~~~~S~wc~ 66 (115)
|....+.+.+.|+..++ +|||+....-+||-
T Consensus 6 ~~~~~~~v~~~i~~~~V--vvfsk~t~~~p~Cp 36 (118)
T 2wem_A 6 GGGSAEQLDALVKKDKV--VVFLKGTPEQPQCG 36 (118)
T ss_dssp ---CHHHHHHHHHHSSE--EEEESBCSSSBSSH
T ss_pred CccHHHHHHHHhccCCE--EEEEecCCCCCccH
Confidence 34455667777777764 55666544444443
No 47
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=30.10 E-value=1.4e+02 Score=21.62 Aligned_cols=65 Identities=5% Similarity=0.061 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhCC----CceeeeCCccCCCcccHHHHHHhhh---cceeeEEeecCCcCCh--hHHHHHHHHHHhh
Q 048656 10 FLSHLVVALHRKN----IETFVDEELTRGDEISPAFLKAIEE---SKISVKIFSKNYASSK--WCLDELVKILKCH 76 (115)
Q Consensus 10 Fv~~L~~aL~~~g----i~~f~d~~l~~G~~i~~~i~~~I~~---s~~~Ivv~S~~~~~S~--wc~~EL~~~~~~~ 76 (115)
.+..|.+.|.+.| +.|.+- ++-|.+..++..+.+.+ .++.++-+.|-|..|. -..+++..++...
T Consensus 63 q~~~L~~~L~~~~~~~~~~V~~a--mry~~P~i~~~l~~l~~~G~~~ivvlPl~pq~s~st~g~~~~~i~~~l~~~ 136 (310)
T 2h1v_A 63 QAHNLEQHLNEIQDEITFKAYIG--LAHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFSVQSYNKRAKEEAEKL 136 (310)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEEE--ESSSSSBHHHHHHHHHHTTCCEEEEEESSSSCCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCceEeeh--hcCCCCCHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHHHHhC
Confidence 4567777886654 334332 56666655555555543 4567888888875443 3456666665543
No 48
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=29.93 E-value=1e+02 Score=19.24 Aligned_cols=21 Identities=5% Similarity=0.055 Sum_probs=16.0
Q ss_pred HHHHHhhhcceeeEEeecCCc
Q 048656 40 AFLKAIEESKISVKIFSKNYA 60 (115)
Q Consensus 40 ~i~~~I~~s~~~Ivv~S~~~~ 60 (115)
.....++.++.+|+|++..-.
T Consensus 109 ~~~~~~~~~d~~i~v~D~~~~ 129 (208)
T 3clv_A 109 IVPLYYRGATCAIVVFDISNS 129 (208)
T ss_dssp THHHHHTTCSEEEEEEETTCH
T ss_pred HHHHHhcCCCEEEEEEECCCH
Confidence 345667899999999996543
No 49
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=29.67 E-value=1.1e+02 Score=19.29 Aligned_cols=68 Identities=15% Similarity=0.036 Sum_probs=40.5
Q ss_pred HHHHhhCCCceeeeCCccCCCcccHHHHHHhhhcceeeEEeecCCcCChhHHHHHHHHHHhhhcCCCEEEEEEEe
Q 048656 15 VVALHRKNIETFVDEELTRGDEISPAFLKAIEESKISVKIFSKNYASSKWCLDELVKILKCHKKNGQVVIPVFYN 89 (115)
Q Consensus 15 ~~aL~~~gi~~f~d~~l~~G~~i~~~i~~~I~~s~~~Ivv~S~~~~~S~wc~~EL~~~~~~~~~~~~~viPIfy~ 89 (115)
...|+..|+.|..-. . +.-.+++.+++.+.+.-++.+|--.....--+.++...++... ... +||+..
T Consensus 24 ~~~l~~~G~~Vi~lG---~-~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g-~~~--i~v~vG 91 (137)
T 1ccw_A 24 DHAFTNAGFNVVNIG---V-LSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAG-LEG--ILLYVG 91 (137)
T ss_dssp HHHHHHTTCEEEEEE---E-EECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTT-CTT--CEEEEE
T ss_pred HHHHHHCCCEEEECC---C-CCCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcC-CCC--CEEEEE
Confidence 356899999987521 1 1224578888888888888888776554333344444443321 112 566663
No 50
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=29.48 E-value=11 Score=22.30 Aligned_cols=31 Identities=16% Similarity=0.290 Sum_probs=19.9
Q ss_pred hhhcceeeEEeecCCcCChhHHHHHHHHHHh
Q 048656 45 IEESKISVKIFSKNYASSKWCLDELVKILKC 75 (115)
Q Consensus 45 I~~s~~~Ivv~S~~~~~S~wc~~EL~~~~~~ 75 (115)
+-+++++++|||++---..||-..+..++++
T Consensus 37 LCdaeV~livfs~~gk~~~~~s~~~~~il~r 67 (77)
T 1egw_A 37 LCDCEIALIIFNSSNKLFQYASTDMDKVLLK 67 (77)
T ss_dssp HTTCEEEEEEECTTCCEEEEESSCHHHHHHH
T ss_pred ccCCeEEEEEECCCCCEeeCCCCCHHHHHHH
Confidence 3478899999999844444443345555544
No 51
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=27.44 E-value=1e+02 Score=25.30 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=42.6
Q ss_pred cHHHHHHHHHhhCCCceeeeCCccCCCcccHHHHHHhhhcceeeEEeecCCcCChhHHHHHHHHHHhhhcCCCEEEEEEE
Q 048656 9 NFLSHLVVALHRKNIETFVDEELTRGDEISPAFLKAIEESKISVKIFSKNYASSKWCLDELVKILKCHKKNGQVVIPVFY 88 (115)
Q Consensus 9 ~Fv~~L~~aL~~~gi~~f~d~~l~~G~~i~~~i~~~I~~s~~~Ivv~S~~~~~S~wc~~EL~~~~~~~~~~~~~viPIfy 88 (115)
..+..|..+|+++|+.|..... ..+.+...-.++++..+|+|-+-. ..++...++... -=+|||.
T Consensus 17 ~~i~~L~~~Le~~g~~V~~a~s------~~Da~~~i~~~~~i~avIld~d~~-----~~~ll~~Ir~~~----~~iPVFl 81 (715)
T 3n75_A 17 EPIRELHRALERLNFQIVYPND------RDDLLKLIENNARLCGVIFDWDKY-----NLELCEEISKMN----ENLPLYA 81 (715)
T ss_dssp HHHHHHHHHHHHTTCEEECCSS------HHHHHHHHHHCTTEEEEEEEHHHH-----HHHHHHHHHHHC----TTCEEEE
T ss_pred HHHHHHHHHHHHCCcEEEEeCC------HHHHHHHHHhCCCceEEEEecccc-----HHHHHHHHHHhC----CCCCEEE
Confidence 4577899999999999866432 233333333567899999986542 234444444332 3468886
Q ss_pred ecCC
Q 048656 89 NVDP 92 (115)
Q Consensus 89 ~v~p 92 (115)
-.+.
T Consensus 82 ~~~~ 85 (715)
T 3n75_A 82 FANT 85 (715)
T ss_dssp ECCT
T ss_pred EecC
Confidence 5444
No 52
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=26.71 E-value=67 Score=19.01 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=25.4
Q ss_pred EEEecCCcccccccchHHHHHHHHHHHhC
Q 048656 86 VFYNVDPSDVRNQKRSFKDAFVKHDKQFN 114 (115)
Q Consensus 86 Ify~v~p~~v~~~~g~~~~~f~~~~~~~~ 114 (115)
|-|-+||.+-+-..|.|.+++-..-++++
T Consensus 14 vtYslSP~~Qr~~~g~~~~~i~n~~RR~~ 42 (81)
T 1pp9_G 14 ITYSLSPFEQRAFPHYFSKGIPNVLRRTR 42 (81)
T ss_dssp EEEEECTTTBCSSTTHHHHHHHHHHHHHH
T ss_pred EEEEeChhhcccccchHhhhhhHHHHHHH
Confidence 56899999999999999999888887764
No 53
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=26.69 E-value=29 Score=20.56 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=14.4
Q ss_pred cHHHHHHhhhcceeeEEeecCCcCChhHHH
Q 048656 38 SPAFLKAIEESKISVKIFSKNYASSKWCLD 67 (115)
Q Consensus 38 ~~~i~~~I~~s~~~Ivv~S~~~~~S~wc~~ 67 (115)
.+.+.+.+...+ |+|++......+||-.
T Consensus 7 ~~~~~~~i~~~~--vvvf~~g~~~~~~C~~ 34 (105)
T 2yan_A 7 EERLKVLTNKAS--VMLFMKGNKQEAKCGF 34 (105)
T ss_dssp HHHHHHHHTSSS--EEEEESBCSSSBCTTH
T ss_pred HHHHHHHhccCC--EEEEEecCCCCCCCcc
Confidence 344455555443 5567765444555543
No 54
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=25.85 E-value=1.1e+02 Score=19.39 Aligned_cols=19 Identities=5% Similarity=0.060 Sum_probs=14.0
Q ss_pred HHhhhcceeeEEeecCCcC
Q 048656 43 KAIEESKISVKIFSKNYAS 61 (115)
Q Consensus 43 ~~I~~s~~~Ivv~S~~~~~ 61 (115)
..++.++.+|+|++..-..
T Consensus 92 ~~~~~~d~~i~v~d~~~~~ 110 (208)
T 2yc2_C 92 QYWNGVYYAILVFDVSSME 110 (208)
T ss_dssp TTCCCCCEEEEEEETTCHH
T ss_pred HHHhhCcEEEEEEECCCHH
Confidence 4567899999999965433
No 55
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=25.55 E-value=1.4e+02 Score=19.14 Aligned_cols=27 Identities=4% Similarity=0.080 Sum_probs=18.6
Q ss_pred CCC-cccHHHHHHhhhcceeeEEeecCC
Q 048656 33 RGD-EISPAFLKAIEESKISVKIFSKNY 59 (115)
Q Consensus 33 ~G~-~i~~~i~~~I~~s~~~Ivv~S~~~ 59 (115)
+|. .+.......+..++.+|+|++..-
T Consensus 85 ~G~~~~~~~~~~~~~~~d~iilv~d~~~ 112 (199)
T 2p5s_A 85 AGQERFRSIAKSYFRKADGVLLLYDVTC 112 (199)
T ss_dssp TTCTTCHHHHHHHHHHCSEEEEEEETTC
T ss_pred CCCcchhhhHHHHHhhCCEEEEEEECCC
Confidence 553 333444567889999999999653
No 56
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=25.24 E-value=26 Score=20.86 Aligned_cols=22 Identities=14% Similarity=0.341 Sum_probs=17.8
Q ss_pred CccccccccHHHHHHHHHhhCC
Q 048656 1 FRGEDICDNFLSHLVVALHRKN 22 (115)
Q Consensus 1 fr~~d~r~~Fv~~L~~aL~~~g 22 (115)
+|....-..||..|++.|++.+
T Consensus 24 ~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 24 WRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp CEETTTEEHHHHHHHHHHHHHT
T ss_pred eEcCCCCCHHHHHHHHHHHHhC
Confidence 4666677789999999998866
No 57
>2ov6_A V-type ATP synthase subunit F; F subunit, A1AO ATP synthase, hydrolase; NMR {Methanosarcina mazei}
Probab=25.03 E-value=70 Score=19.37 Aligned_cols=44 Identities=9% Similarity=0.186 Sum_probs=31.0
Q ss_pred HHHHhhCCCc-eeeeCCccCCCcccHHHHHHhhhcceeeEEeecCCcC
Q 048656 15 VVALHRKNIE-TFVDEELTRGDEISPAFLKAIEESKISVKIFSKNYAS 61 (115)
Q Consensus 15 ~~aL~~~gi~-~f~d~~l~~G~~i~~~i~~~I~~s~~~Ivv~S~~~~~ 61 (115)
...++-.|+. ++... ..+.+.+.+.+.+++.++.|++++.+.++
T Consensus 12 v~GFrLaGi~~v~~v~---~~ee~~~~~~~l~~~~digIIlite~~a~ 56 (101)
T 2ov6_A 12 VTGFRLAGISKVYETP---DIPATESAVRSVLEDKSVGILVMHNDDIG 56 (101)
T ss_dssp HHHHHHHTCCEEEECC---STTTHHHHHHHHHHHTSSSEEEEEHHHHT
T ss_pred HHHHHHcCCCceEecC---CHHHHHHHHHHHhhCCCeEEEEEcHHHHH
Confidence 3556667887 76322 23455666777777789999999998776
No 58
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=24.44 E-value=45 Score=25.60 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHhhCCCceeeeCC
Q 048656 8 DNFLSHLVVALHRKNIETFVDEE 30 (115)
Q Consensus 8 ~~Fv~~L~~aL~~~gi~~f~d~~ 30 (115)
...+..|++.|++.|+.|-+|+.
T Consensus 381 ~~~a~~l~~~Lr~~Gi~v~~D~~ 403 (458)
T 2i4l_A 381 DAACDQLYRELSAKGVDVLYDDT 403 (458)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECS
T ss_pred HHHHHHHHHHHhhCCCEEEEECC
Confidence 45677899999999999999985
No 59
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=23.95 E-value=54 Score=21.57 Aligned_cols=48 Identities=17% Similarity=0.128 Sum_probs=27.3
Q ss_pred ccccHHHHHHHHHhhCCCceeeeCCccCC--CcccHHHHHHhh--hcceeeEEee
Q 048656 6 ICDNFLSHLVVALHRKNIETFVDEELTRG--DEISPAFLKAIE--ESKISVKIFS 56 (115)
Q Consensus 6 ~r~~Fv~~L~~aL~~~gi~~f~d~~l~~G--~~i~~~i~~~I~--~s~~~Ivv~S 56 (115)
++++-...|.+.|++.|+.+..-. +-+. +.+...+.++++ +++ ++|.|
T Consensus 28 i~Dsn~~~l~~~L~~~G~~v~~~~-iv~Dd~~~i~~~l~~~~~~~~~D--lVitt 79 (169)
T 1y5e_A 28 ETDKSGQLLHELLKEAGHKVTSYE-IVKDDKESIQQAVLAGYHKEDVD--VVLTN 79 (169)
T ss_dssp TTCHHHHHHHHHHHHHTCEEEEEE-EECSSHHHHHHHHHHHHTCTTCS--EEEEE
T ss_pred eccChHHHHHHHHHHCCCeEeEEE-EeCCCHHHHHHHHHHHHhcCCCC--EEEEc
Confidence 455666778888999998754321 1122 234455555665 455 44444
No 60
>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}
Probab=23.32 E-value=1e+02 Score=23.88 Aligned_cols=53 Identities=9% Similarity=0.117 Sum_probs=37.1
Q ss_pred ccccccHHHHHHHHHhhCCCceeeeCC-c-c-----CCCc--ccHHHHHHhhhcceeeEEee
Q 048656 4 EDICDNFLSHLVVALHRKNIETFVDEE-L-T-----RGDE--ISPAFLKAIEESKISVKIFS 56 (115)
Q Consensus 4 ~d~r~~Fv~~L~~aL~~~gi~~f~d~~-l-~-----~G~~--i~~~i~~~I~~s~~~Ivv~S 56 (115)
+|+|.+=+-.|.+.|.++|..+...|- . + -|+. ..+...+++++++..|+...
T Consensus 348 dD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a~~~aDavvi~t~ 409 (444)
T 3vtf_A 348 DDVRESRGVEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALLDQVEGVIIATA 409 (444)
T ss_dssp CCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHHHHHCSEEEECSC
T ss_pred CccccCcHHHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHHHhCCCEEEEccC
Confidence 589999999999999999998877653 2 1 1222 22345677888887666543
No 61
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=23.27 E-value=69 Score=24.59 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=41.2
Q ss_pred ccccccHHHHHHHHHhhCCCceeeeCC-ccC------CC--cccHHHHHHhhhcceeeEEeecC-CcCChh
Q 048656 4 EDICDNFLSHLVVALHRKNIETFVDEE-LTR------GD--EISPAFLKAIEESKISVKIFSKN-YASSKW 64 (115)
Q Consensus 4 ~d~r~~Fv~~L~~aL~~~gi~~f~d~~-l~~------G~--~i~~~i~~~I~~s~~~Ivv~S~~-~~~S~w 64 (115)
+|+|.+=+-.|.+.|.++|..+...|- ... |. .+.+...+++++++..|+...-+ |.+-.|
T Consensus 333 dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~~f~~~~~ 403 (450)
T 3gg2_A 333 DDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHVTEWKEFRMPDW 403 (450)
T ss_dssp CCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEECSCCGGGSSCCH
T ss_pred cccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEccCCHHHhhcCH
Confidence 689999999999999999998877654 311 21 12234557888898866665533 544444
No 62
>4ggi_A UDP-2,3-diacylglucosamine pyrophosphatase LPXI; structural genomics, PSI-biology; HET: UDG; 2.52A {Caulobacter crescentus} PDB: 4ggm_X*
Probab=22.96 E-value=1.3e+02 Score=21.65 Aligned_cols=51 Identities=12% Similarity=0.124 Sum_probs=30.3
Q ss_pred ccccccH----HHHHHHHHhhCCCceeeeCCccCCCcc---cHHHHHHhhhcceeeEEeecC
Q 048656 4 EDICDNF----LSHLVVALHRKNIETFVDEELTRGDEI---SPAFLKAIEESKISVKIFSKN 58 (115)
Q Consensus 4 ~d~r~~F----v~~L~~aL~~~gi~~f~d~~l~~G~~i---~~~i~~~I~~s~~~Ivv~S~~ 58 (115)
.|.|-.| .+.+ +.+.+.|++.-. +++|.++ .+++.++.++..++++=++|.
T Consensus 223 qD~~fd~P~iG~dti-~~~~~ag~~~iv---i~~g~si~~~~~~~i~~a~~~gi~~~~~~~~ 280 (283)
T 4ggi_A 223 QETRVALPTIGVATI-HRAARAGLAGIV---GEAGRLLVVDREAVIAAADDLGLFVLGVDPQ 280 (283)
T ss_dssp ---CCCCCEECHHHH-HHHHHTTCCEEE---EETTBCEETTHHHHHHHHHHHTCEEEEECC-
T ss_pred cccccCCccccHHHH-HHHHHcCCeEEE---EcCCCcEEeCHHHHHHHHHHcCCEEEEeCCC
Confidence 4666666 5666 666777777544 5667765 345566666777777766553
No 63
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=22.92 E-value=80 Score=20.83 Aligned_cols=48 Identities=10% Similarity=-0.013 Sum_probs=27.1
Q ss_pred ccccHHHHHHHHHhhCCCceeeeCCccCC--CcccHHHHHHhhh--cceeeEEee
Q 048656 6 ICDNFLSHLVVALHRKNIETFVDEELTRG--DEISPAFLKAIEE--SKISVKIFS 56 (115)
Q Consensus 6 ~r~~Fv~~L~~aL~~~gi~~f~d~~l~~G--~~i~~~i~~~I~~--s~~~Ivv~S 56 (115)
+.++-...|.+.|++.|+.+..-. +-+. +.+...+.+++++ ++ +||.|
T Consensus 25 i~D~n~~~l~~~L~~~G~~v~~~~-iv~Dd~~~i~~~l~~a~~~~~~D--lVitt 76 (172)
T 1mkz_A 25 EDDTSGHYLRDSAQEAGHHVVDKA-IVKENRYAIRAQVSAWIASDDVQ--VVLIT 76 (172)
T ss_dssp GGCHHHHHHHHHHHHTTCEEEEEE-EECSCHHHHHHHHHHHHHSSSCC--EEEEE
T ss_pred ccCccHHHHHHHHHHCCCeEeEEE-EeCCCHHHHHHHHHHHHhcCCCC--EEEeC
Confidence 455566778899999998754322 1121 2344455555554 54 44444
No 64
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=22.91 E-value=1.7e+02 Score=21.76 Aligned_cols=23 Identities=17% Similarity=0.281 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHhhCCCceeeeCC
Q 048656 8 DNFLSHLVVALHRKNIETFVDEE 30 (115)
Q Consensus 8 ~~Fv~~L~~aL~~~gi~~f~d~~ 30 (115)
...+..|++.|++.|+.+-+|..
T Consensus 311 ~~~a~~l~~~Lr~~Gi~v~~d~~ 333 (401)
T 1evl_A 311 SEYVNELTQKLSNAGIRVKADLR 333 (401)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHHHHHCCCEEEEECC
Confidence 34567899999999999999874
No 65
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=22.73 E-value=80 Score=21.05 Aligned_cols=51 Identities=20% Similarity=0.119 Sum_probs=28.3
Q ss_pred cccccHHHHHHHHHhhCCCceeeeCCccCC--CcccHHHHHHhhhcceeeEEee
Q 048656 5 DICDNFLSHLVVALHRKNIETFVDEELTRG--DEISPAFLKAIEESKISVKIFS 56 (115)
Q Consensus 5 d~r~~Fv~~L~~aL~~~gi~~f~d~~l~~G--~~i~~~i~~~I~~s~~~Ivv~S 56 (115)
.++++....|.+.|++.|..+-.-. +-+. +.+...+.+++++...=++|.|
T Consensus 36 ~i~Dsn~~~L~~~l~~~G~~v~~~~-iv~Dd~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 36 PIVDESGDIIKQLLIENGHKIIGYS-LVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEE-EECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred eEeehHHHHHHHHHHHCCCEEEEEE-EeCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 4567777789999999998754321 1122 2344455555555123344444
No 66
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=22.66 E-value=71 Score=20.85 Aligned_cols=48 Identities=13% Similarity=-0.034 Sum_probs=27.1
Q ss_pred ccccHHHHHHHHHhhCCCceeeeCCccCC--CcccHHHHHHhh--hcceeeEEee
Q 048656 6 ICDNFLSHLVVALHRKNIETFVDEELTRG--DEISPAFLKAIE--ESKISVKIFS 56 (115)
Q Consensus 6 ~r~~Fv~~L~~aL~~~gi~~f~d~~l~~G--~~i~~~i~~~I~--~s~~~Ivv~S 56 (115)
++++-...|.+.|++.|+.+..-. +-+. +.+.+.+.++++ +++ ++|.|
T Consensus 18 i~D~n~~~l~~~l~~~G~~v~~~~-iv~Dd~~~i~~~l~~~~~~~~~D--lVitt 69 (164)
T 2is8_A 18 RQDTTHLAIREVLAGGPFEVAAYE-LVPDEPPMIKKVLRLWADREGLD--LILTN 69 (164)
T ss_dssp SCCCHHHHHHHHHTTSSEEEEEEE-EECSCHHHHHHHHHHHHHTSCCS--EEEEE
T ss_pred cccchHHHHHHHHHHCCCeEeEEE-EcCCCHHHHHHHHHHHHhcCCCC--EEEEc
Confidence 455666778899999998654321 1122 234455555555 344 44444
No 67
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=22.54 E-value=53 Score=18.04 Aligned_cols=11 Identities=18% Similarity=0.120 Sum_probs=7.4
Q ss_pred cHHHHHHhhhc
Q 048656 38 SPAFLKAIEES 48 (115)
Q Consensus 38 ~~~i~~~I~~s 48 (115)
.++|..|+++|
T Consensus 44 ~~EI~~Al~rs 54 (54)
T 3ff5_A 44 DEEIDLAFQQS 54 (54)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHcC
Confidence 55777777664
No 68
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Probab=22.44 E-value=68 Score=24.55 Aligned_cols=55 Identities=13% Similarity=0.026 Sum_probs=37.4
Q ss_pred ccccccHHHHHHHHHhhCCCceeeeCC-ccCC--------------------CcccHHHHHHhhhcceeeEEeecC
Q 048656 4 EDICDNFLSHLVVALHRKNIETFVDEE-LTRG--------------------DEISPAFLKAIEESKISVKIFSKN 58 (115)
Q Consensus 4 ~d~r~~Fv~~L~~aL~~~gi~~f~d~~-l~~G--------------------~~i~~~i~~~I~~s~~~Ivv~S~~ 58 (115)
+|+|.+=+-.|.+.|.++|..+...|- .... -.+.+...+++++++..|++...+
T Consensus 344 dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~ 419 (467)
T 2q3e_A 344 GDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWD 419 (467)
T ss_dssp CCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHHHTTCSEEEECSCCG
T ss_pred cchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHHHhCCcEEEEecCCh
Confidence 589999999999999999998776553 3211 011123456788888877665544
No 69
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=22.41 E-value=50 Score=25.85 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=20.5
Q ss_pred cccHHHHHHHHHhhCCCceeeeCC
Q 048656 7 CDNFLSHLVVALHRKNIETFVDEE 30 (115)
Q Consensus 7 r~~Fv~~L~~aL~~~gi~~f~d~~ 30 (115)
-...+..|++.|++.|+.+-+|+.
T Consensus 331 ~~~~a~~l~~~Lr~~Gi~v~~D~~ 354 (501)
T 1nj1_A 331 VMEACRELRSRLEAAGFRVHLDDR 354 (501)
T ss_dssp HHHHHHHHHHHHHTTTCCEEECCC
T ss_pred HHHHHHHHHHHHHhCCCEEEEECC
Confidence 345778899999999999999985
No 70
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=22.40 E-value=58 Score=25.78 Aligned_cols=31 Identities=16% Similarity=-0.024 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHhhCCCceeeeCC-c-cCCCccc
Q 048656 8 DNFLSHLVVALHRKNIETFVDEE-L-TRGDEIS 38 (115)
Q Consensus 8 ~~Fv~~L~~aL~~~gi~~f~d~~-l-~~G~~i~ 38 (115)
...+..|++.|+..||.+-+|++ - .+|..+.
T Consensus 331 ~~~a~~l~~~L~~~Girv~~Ddr~~~s~G~K~~ 363 (519)
T 4hvc_A 331 IAKCNDYRRRLLSVNIRVRADLRDNYSPGWKFN 363 (519)
T ss_dssp HHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH
Confidence 35778899999999999999986 3 4554443
No 71
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=22.25 E-value=1.1e+02 Score=19.53 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=17.8
Q ss_pred HHHHHHhhhcceeeEEeecCC
Q 048656 39 PAFLKAIEESKISVKIFSKNY 59 (115)
Q Consensus 39 ~~i~~~I~~s~~~Ivv~S~~~ 59 (115)
++|.+.|++-.+-+||..++-
T Consensus 86 ~~i~d~i~~g~i~lVInt~~~ 106 (143)
T 2yvq_A 86 SSIRKLIRDGSIDLVINLPNN 106 (143)
T ss_dssp BCHHHHHHTTSCCEEEECCCC
T ss_pred ccHHHHHHCCCceEEEECCCC
Confidence 578888999999999988865
No 72
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=22.19 E-value=28 Score=21.78 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=12.7
Q ss_pred HHHHHhhhcceeeEEeecCCcC
Q 048656 40 AFLKAIEESKISVKIFSKNYAS 61 (115)
Q Consensus 40 ~i~~~I~~s~~~Ivv~S~~~~~ 61 (115)
....++......++|||+.|-.
T Consensus 43 ~emg~lsG~~rsLvvFSsgYrP 64 (102)
T 2pp6_A 43 AELGPVEGNGKNVVVFSGNVIP 64 (102)
T ss_dssp C--------CEEEEECCSSCCC
T ss_pred HHhCCccCCceEEEEecCCccc
Confidence 4566799999999999999987
No 73
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=21.96 E-value=41 Score=20.10 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=8.4
Q ss_pred HHHHHHhhhcceeeEEeec
Q 048656 39 PAFLKAIEESKISVKIFSK 57 (115)
Q Consensus 39 ~~i~~~I~~s~~~Ivv~S~ 57 (115)
+.+.+.|...+ |+|++.
T Consensus 6 ~~~~~~i~~~~--vvvy~~ 22 (109)
T 1wik_A 6 SGLKVLTNKAS--VMLFMK 22 (109)
T ss_dssp CCHHHHHTTSS--EEEEES
T ss_pred HHHHHHhccCC--EEEEEe
Confidence 34445555444 445555
No 74
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=21.95 E-value=1.5e+02 Score=18.23 Aligned_cols=22 Identities=14% Similarity=0.036 Sum_probs=16.6
Q ss_pred HHHHhhhcceeeEEeecCCcCC
Q 048656 41 FLKAIEESKISVKIFSKNYASS 62 (115)
Q Consensus 41 i~~~I~~s~~~Ivv~S~~~~~S 62 (115)
....++.++.+|+|++..-..|
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s 94 (178)
T 2hxs_A 73 LDKYIYGAQGVLLVYDITNYQS 94 (178)
T ss_dssp HHHHHTTCSEEEEEEETTCHHH
T ss_pred hhHHHhhCCEEEEEEECCCHHH
Confidence 3456889999999999765443
No 75
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=21.84 E-value=19 Score=22.01 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=20.3
Q ss_pred hhhcceeeEEeecCCcCChhHHHHHHHHHHhh
Q 048656 45 IEESKISVKIFSKNYASSKWCLDELVKILKCH 76 (115)
Q Consensus 45 I~~s~~~Ivv~S~~~~~S~wc~~EL~~~~~~~ 76 (115)
+=+++++++|||++=--..||--.+..++++.
T Consensus 37 LCda~Valiifs~~gk~~~f~s~~~~~il~rY 68 (90)
T 3p57_A 37 LCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68 (90)
T ss_dssp HHTCEEEEEEECTTCCEEEEESSCHHHHHHHH
T ss_pred ccCCceEEEEECCCCCEEEeCCCCHHHHHHHH
Confidence 44789999999998433444433455555543
No 76
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=21.80 E-value=63 Score=19.07 Aligned_cols=19 Identities=21% Similarity=0.191 Sum_probs=12.7
Q ss_pred HHHHHHhhhcceeeEEeec
Q 048656 39 PAFLKAIEESKISVKIFSK 57 (115)
Q Consensus 39 ~~i~~~I~~s~~~Ivv~S~ 57 (115)
+.+.+.++..+.+++.|..
T Consensus 21 ~~~~~~~~~~k~vvv~F~a 39 (114)
T 2oe3_A 21 TEFRNLIKQNDKLVIDFYA 39 (114)
T ss_dssp HHHHHHHHHCSEEEEEEEC
T ss_pred HHHHHHHhCCCEEEEEEEC
Confidence 3455667777777777763
No 77
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=21.67 E-value=90 Score=19.93 Aligned_cols=19 Identities=5% Similarity=0.064 Sum_probs=15.1
Q ss_pred HHHHhhhcceeeEEeecCC
Q 048656 41 FLKAIEESKISVKIFSKNY 59 (115)
Q Consensus 41 i~~~I~~s~~~Ivv~S~~~ 59 (115)
+...+..++.+|+|++-+-
T Consensus 85 ~~~~~~~~~~~ilv~d~~~ 103 (187)
T 3c5c_A 85 CERYLNWAHAFLVVYSVDS 103 (187)
T ss_dssp THHHHTTCSEEEEEEETTC
T ss_pred HHHHHhhCCEEEEEEECCC
Confidence 3456788999999999773
No 78
>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*
Probab=21.42 E-value=60 Score=24.57 Aligned_cols=54 Identities=15% Similarity=0.083 Sum_probs=37.0
Q ss_pred ccccccHHHHHHHHHhhCCCceeeeCC-ccC----------C--------CcccHHHHHHhhhcceeeEEeec
Q 048656 4 EDICDNFLSHLVVALHRKNIETFVDEE-LTR----------G--------DEISPAFLKAIEESKISVKIFSK 57 (115)
Q Consensus 4 ~d~r~~Fv~~L~~aL~~~gi~~f~d~~-l~~----------G--------~~i~~~i~~~I~~s~~~Ivv~S~ 57 (115)
+|+|.+=+-.|.+.|.+.|..+...|- +.. | ..+.....+++++++..|+....
T Consensus 328 ~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~vi~~~~ 400 (436)
T 1mv8_A 328 DDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGD 400 (436)
T ss_dssp CCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHCSEEEECSCC
T ss_pred CccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhcccccccccccccCCHHHHHhCCcEEEEeCCc
Confidence 589999999999999999998777553 211 0 12223445678888887655443
No 79
>3t5x_B 26S proteasome complex subunit DSS1; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens} PDB: 1iyj_A 1mje_B 1miu_B
Probab=21.37 E-value=67 Score=18.62 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=18.7
Q ss_pred cccccccHHHHHHHHHhhCCCc
Q 048656 3 GEDICDNFLSHLVVALHRKNIE 24 (115)
Q Consensus 3 ~~d~r~~Fv~~L~~aL~~~gi~ 24 (115)
..|+...|...|.+.|++.|.+
T Consensus 45 Dddv~DDFs~QLr~EL~k~~~k 66 (70)
T 3t5x_B 45 DDNVEDDFSNQLRAELEKHGYK 66 (70)
T ss_dssp SSCCCSHHHHHHHHHHHHTTCC
T ss_pred ccccchHHHHHHHHHHHHhhhc
Confidence 4577889999999999998864
No 80
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=21.07 E-value=90 Score=21.12 Aligned_cols=21 Identities=10% Similarity=-0.183 Sum_probs=16.3
Q ss_pred cccHHHHHHHHHhhCCCceee
Q 048656 7 CDNFLSHLVVALHRKNIETFV 27 (115)
Q Consensus 7 r~~Fv~~L~~aL~~~gi~~f~ 27 (115)
+++....|.+.|++.|+.+..
T Consensus 47 ~Dsn~~~L~~~L~~~G~~v~~ 67 (185)
T 3rfq_A 47 EDHSGPLVTELLTEAGFVVDG 67 (185)
T ss_dssp CCSHHHHHHHHHHHTTEEEEE
T ss_pred cCcHHHHHHHHHHHCCCEEEE
Confidence 666777888999999986543
No 81
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=20.52 E-value=70 Score=25.84 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=29.1
Q ss_pred ccHHHHHHHHHhhCCCceeeeCCccCCCcccHHHHHHh-hhcceeeEEeecC
Q 048656 8 DNFLSHLVVALHRKNIETFVDEELTRGDEISPAFLKAI-EESKISVKIFSKN 58 (115)
Q Consensus 8 ~~Fv~~L~~aL~~~gi~~f~d~~l~~G~~i~~~i~~~I-~~s~~~Ivv~S~~ 58 (115)
...+..|++.|++.|+.+-+|++ +.++...+.+|- .+.. .++|+.++
T Consensus 552 ~~~a~~v~~~L~~~Gi~v~~D~~---~~~~g~kir~a~~~g~p-~~ivvG~~ 599 (642)
T 1qf6_A 552 SEYVNELTQKLSNAGIRVKADLR---NEKIGFKIREHTLRRVP-YMLVCGDK 599 (642)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECC---SSCHHHHHHHHHHTTCS-EEEEECTT
T ss_pred HHHHHHHHHHHHhCCCEEEEECC---CCCHHHHHHHHHHcCCC-EEEEECch
Confidence 34677899999999999999985 333333333322 2233 45555554
No 82
>2pw6_A Uncharacterized protein YGID; JW3007, escherichia coli structural genomics, protein structure, riken and PSI, protein structu initiative; 2.27A {Escherichia coli} SCOP: c.56.6.1
Probab=20.21 E-value=1.5e+02 Score=21.18 Aligned_cols=68 Identities=13% Similarity=0.061 Sum_probs=45.3
Q ss_pred ccHHHHHHHHHhhCCCceeeeCC-ccCCCcccHHHHHHhhhcceeeEEeecCCcCChhHHHHHHHHHHhhh
Q 048656 8 DNFLSHLVVALHRKNIETFVDEE-LTRGDEISPAFLKAIEESKISVKIFSKNYASSKWCLDELVKILKCHK 77 (115)
Q Consensus 8 ~~Fv~~L~~aL~~~gi~~f~d~~-l~~G~~i~~~i~~~I~~s~~~Ivv~S~~~~~S~wc~~EL~~~~~~~~ 77 (115)
..+..++.+.|...|+.+-..+. +--|.... +...-.+.++=||-+|-+...+.--..+|.+++...+
T Consensus 95 peLA~~i~~~l~~~g~~~~~~~~glDHG~~vP--L~~m~p~adiPVVqlSi~~~~~p~~~~~lG~aL~~lr 163 (271)
T 2pw6_A 95 PALAQRLVELLAPIPVTLDKEAWGFDHGSWGV--LIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALR 163 (271)
T ss_dssp HHHHHHHHHHHTTSCEEEESSCCCCCHHHHHH--HHHHSTTCCSCEEEEEEETTSCHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhcCCcccccccCCCcchhhh--HHHhcCCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 35788999999999986554333 54553322 2223346778788888887666655568888887654
Done!