BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048657
(456 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 143/521 (27%), Positives = 224/521 (42%), Gaps = 123/521 (23%)
Query: 14 IIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRIL 73
++ + LK+L++S + S +D C V+L+ L + +N+ +P+ L + ++L+ L
Sbjct: 172 VLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFSTGIPF-LGDCSALQHL 228
Query: 74 DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAE 133
D+S N+L+G S + + T ++ L +S+N F PI P L++ N+ E
Sbjct: 229 DISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGE 284
Query: 134 ITQSHSLIPPKF------QLSRLSLSSGYEDGVTFPKF---------------------- 165
I P F L+ L LS + G P F
Sbjct: 285 I--------PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 166 --LYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPF--RLPIHSHKQL 221
L L+ +DLS + +GE P L + L+ L + +++ +GP L + L
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396
Query: 222 RLLDISTNNFRGHIPVEIGDV--LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279
+ L + N F G IP + + L SL++ S N L G+IPSS G++ L+ L L N
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHL---SFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 280 LTGEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSK 339
L GEIP+ L M+ + L+ L L+ N GEIP LS
Sbjct: 454 LEGEIPQEL--------------------MYVKT-----LETLILDFNDLTGEIPSGLSN 488
Query: 340 CSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDN 399
C++L + L+NN L+G IP+W+G L L + + NN G IP E SL LD++ N
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Query: 400 NISGSLPACFHPLS---------------------IKQVHLSKNMLHGQLKRG------- 431
+G++PA S K+ H + N+L Q R
Sbjct: 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 608
Query: 432 ------------------TFFNCSSLVTLDLSYNRLNGSIP 454
TF N S++ LD+SYN L+G IP
Sbjct: 609 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 649
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 125/450 (27%), Positives = 194/450 (43%), Gaps = 72/450 (16%)
Query: 41 CSLVHLQELYIDNNDLRGSLPW--CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 98
CS L L + N L G + L + + L+ L+VSSN L S + L S+E L
Sbjct: 98 CS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156
Query: 99 MLSNNHFQIPISLEPFFNHS--RLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGY 156
LS N + + LK N+I+ ++ S + +S + S+G
Sbjct: 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI 216
Query: 157 EDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIH 216
FL L+++D+S K++G+F + + T+L L++ ++ GP +P
Sbjct: 217 -------PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPL 266
Query: 217 SHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFG----------- 265
K L+ L ++ N F G IP + +L + S N G++P FG
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 266 --------------NMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXXGHMFS 311
M+ L++LDLS N +GE+PE L G +
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 312 RNFNLA-----NLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTW 366
NL L+ L L+ N F G+IP +LS CS L LHL+ N LSG IP LG+L+
Sbjct: 387 ---NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443
Query: 367 LQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHG 426
L+ + + N LEG IP E + +L+ L + N+++G +P+
Sbjct: 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS---------------- 487
Query: 427 QLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
NC++L + LS NRL G IP W
Sbjct: 488 --------NCTNLNWISLSNNRLTGEIPKW 509
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 111/399 (27%), Positives = 183/399 (45%), Gaps = 27/399 (6%)
Query: 40 LCSLVHLQELYIDNNDLRGSLPWCLANMT-SLRILDVSSNQLTGSISSSPLVHLT----- 93
L + L+ L + N+ G LP L N++ SL LD+SSN +G I L +L
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI----LPNLCQNPKN 394
Query: 94 SIEELMLSNNHF--QIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLS 151
+++EL L NN F +IP +L N S L + N ++ I S + +L L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLS---NCSELVSLHLSFNYLSGTIPSSLGSLS---KLRDLK 448
Query: 152 LSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPF 211
L +G P+ L + LE + L + GE P+ L N T L +S+ N+ L G
Sbjct: 449 LWLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEI 506
Query: 212 RLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ 271
I + L +L +S N+F G+IP E+GD SL + + N +G+IP++ F Q
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAM----FKQ 561
Query: 272 ILDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFN-LANLKLLQLEGNRFV 330
++ N + G+ ++ + + S N L+ + +
Sbjct: 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621
Query: 331 GEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDS 390
G + S+ L ++ N LSG IP+ +G++ +L + + +N + G IP E L
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 391 LQILDISDNNISGSLPACFHPLS-IKQVHLSKNMLHGQL 428
L ILD+S N + G +P L+ + ++ LS N L G +
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 117/425 (27%), Positives = 183/425 (43%), Gaps = 74/425 (17%)
Query: 6 ALNTSFLQIIGESMPSLKYLS-------LSDSNSSRILDRGLCSLVH--LQELYIDNNDL 56
L+ SF + GE SL LS LS +N S + LC LQELY+ NN
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406
Query: 57 RGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFN 116
G +P L+N + L L +S N L+G+I SS L L+ + +L L N + I E +
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 117 HSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVD 176
+ L+ + N + EI P L + +L ++
Sbjct: 466 KT-LETLILDFNDLTGEI----------------------------PSGLSNCTNLNWIS 496
Query: 177 LSHIKMNGEFPTWL--LENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGH 234
LS+ ++ GE P W+ LEN L L + N+S +G + + L LD++TN F G
Sbjct: 497 LSNNRLTGEIPKWIGRLEN---LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 235 IPVEI----GDVLPS-------LYVFNNSMNA-LDGSIPSSFGNM-KFLQILDLSNNHLT 281
IP + G + + +Y+ N+ M G+ GN+ +F I N L+
Sbjct: 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA-----GNLLEFQGIRSEQLNRLS 608
Query: 282 GEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCS 341
P ++ GH N ++ L + N G IP+ +
Sbjct: 609 TRNPCNIT------------SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 342 SLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNI 401
L L+L +N +SG IP +G+L L + + +N L+G IP L L +D+S+NN+
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 402 SGSLP 406
SG +P
Sbjct: 717 SGPIP 721
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 120/258 (46%), Gaps = 20/258 (7%)
Query: 46 LQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF 105
L+ L +D NDL G +P L+N T+L + +S+N+LTG I + L ++ L LSNN F
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSF 526
Query: 106 Q--IPISLEP------------FFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLS 151
IP L FN + + ++ +I A + K +
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586
Query: 152 LSSGYEDGVTFPKFLYHQ-HDLEYVDLSHI--KMNGEFPTWLLENNTKLIQLSVVNDSLA 208
G + + F Q + L + +I ++ G + +NN ++ L + + L+
Sbjct: 587 CH-GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645
Query: 209 GPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMK 268
G I S L +L++ N+ G IP E+GD L L + + S N LDG IP + +
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALT 704
Query: 269 FLQILDLSNNHLTGEIPE 286
L +DLSNN+L+G IPE
Sbjct: 705 MLTEIDLSNNNLSGPIPE 722
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 134/294 (45%), Gaps = 31/294 (10%)
Query: 177 LSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRL--PIHSHKQLRLLDISTNNFRGH 234
LS+ +NG + + + L L + +SL+GP + S L+ L++S+N
Sbjct: 84 LSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 235 IPVEIGDVLPSLYVFNNSMNALDGS------IPSSFGNMKFLQILDLSNNHLTGEIPEHL 288
V G L SL V + S N++ G+ + G +K L I S N ++G++
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVDVSR 198
Query: 289 AVGCVXXXXXXXXXXXXXGHMFSRNF----NLANLKLLQLEGNRFVGEIPQSLSKCSSLE 344
V + FS + + L+ L + GN+ G+ +++S C+ L+
Sbjct: 199 CV--------NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELK 250
Query: 345 GLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQ--LDSLQILDISDNNIS 402
L++++N G IP L LQY+ + N G IP +F D+L LD+S N+
Sbjct: 251 LLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSGNHFY 307
Query: 403 GSLPACF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
G++P F ++ + LS N G+L T L LDLS+N +G +P+
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
Query: 1 MSTRIALNTSFLQIIGESMP------SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNN 54
+STR N + G + P S+ +L +S + S + + + S+ +L L + +N
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Query: 55 DLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPI 109
D+ GS+P + ++ L ILD+SSN+L G I + + LT + E+ LSNN+ PI
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-MSALTMLTEIDLSNNNLSGPI 720
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 143/521 (27%), Positives = 224/521 (42%), Gaps = 123/521 (23%)
Query: 14 IIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRIL 73
++ + LK+L++S + S +D C V+L+ L + +N+ +P+ L + ++L+ L
Sbjct: 169 VLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSNNFSTGIPF-LGDCSALQHL 225
Query: 74 DVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAE 133
D+S N+L+G S + + T ++ L +S+N F PI P L++ N+ E
Sbjct: 226 DISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAENKFTGE 281
Query: 134 ITQSHSLIPPKF------QLSRLSLSSGYEDGVTFPKF---------------------- 165
I P F L+ L LS + G P F
Sbjct: 282 I--------PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 333
Query: 166 --LYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPF--RLPIHSHKQL 221
L L+ +DLS + +GE P L + L+ L + +++ +GP L + L
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 393
Query: 222 RLLDISTNNFRGHIPVEIGDV--LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279
+ L + N F G IP + + L SL++ S N L G+IPSS G++ L+ L L N
Sbjct: 394 QELYLQNNGFTGKIPPTLSNCSELVSLHL---SFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 280 LTGEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSK 339
L GEIP+ L M+ + L+ L L+ N GEIP LS
Sbjct: 451 LEGEIPQEL--------------------MYVKT-----LETLILDFNDLTGEIPSGLSN 485
Query: 340 CSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDN 399
C++L + L+NN L+G IP+W+G L L + + NN G IP E SL LD++ N
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
Query: 400 NISGSLPACFHPLS---------------------IKQVHLSKNMLHGQLKRG------- 431
+G++PA S K+ H + N+L Q R
Sbjct: 546 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 605
Query: 432 ------------------TFFNCSSLVTLDLSYNRLNGSIP 454
TF N S++ LD+SYN L+G IP
Sbjct: 606 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP 646
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 125/450 (27%), Positives = 194/450 (43%), Gaps = 72/450 (16%)
Query: 41 CSLVHLQELYIDNNDLRGSLPW--CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 98
CS L L + N L G + L + + L+ L+VSSN L S + L S+E L
Sbjct: 95 CS-ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 153
Query: 99 MLSNNHFQIPISLEPFFNHS--RLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGY 156
LS N + + LK N+I+ ++ S + +S + S+G
Sbjct: 154 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI 213
Query: 157 EDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIH 216
FL L+++D+S K++G+F + + T+L L++ ++ GP +P
Sbjct: 214 -------PFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGP--IPPL 263
Query: 217 SHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFG----------- 265
K L+ L ++ N F G IP + +L + S N G++P FG
Sbjct: 264 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 323
Query: 266 --------------NMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXXGHMFS 311
M+ L++LDLS N +GE+PE L G +
Sbjct: 324 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 383
Query: 312 RNFNLA-----NLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTW 366
NL L+ L L+ N F G+IP +LS CS L LHL+ N LSG IP LG+L+
Sbjct: 384 ---NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 440
Query: 367 LQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHG 426
L+ + + N LEG IP E + +L+ L + N+++G +P+
Sbjct: 441 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS---------------- 484
Query: 427 QLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456
NC++L + LS NRL G IP W
Sbjct: 485 --------NCTNLNWISLSNNRLTGEIPKW 506
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 111/399 (27%), Positives = 183/399 (45%), Gaps = 27/399 (6%)
Query: 40 LCSLVHLQELYIDNNDLRGSLPWCLANMT-SLRILDVSSNQLTGSISSSPLVHLT----- 93
L + L+ L + N+ G LP L N++ SL LD+SSN +G I L +L
Sbjct: 336 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI----LPNLCQNPKN 391
Query: 94 SIEELMLSNNHF--QIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLS 151
+++EL L NN F +IP +L N S L + N ++ I S + +L L
Sbjct: 392 TLQELYLQNNGFTGKIPPTLS---NCSELVSLHLSFNYLSGTIPSSLGSLS---KLRDLK 445
Query: 152 LSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPF 211
L +G P+ L + LE + L + GE P+ L N T L +S+ N+ L G
Sbjct: 446 LWLNMLEG-EIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNLNWISLSNNRLTGEI 503
Query: 212 RLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ 271
I + L +L +S N+F G+IP E+GD SL + + N +G+IP++ F Q
Sbjct: 504 PKWIGRLENLAILKLSNNSFSGNIPAELGDCR-SLIWLDLNTNLFNGTIPAAM----FKQ 558
Query: 272 ILDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFN-LANLKLLQLEGNRFV 330
++ N + G+ ++ + + S N L+ + +
Sbjct: 559 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 618
Query: 331 GEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDS 390
G + S+ L ++ N LSG IP+ +G++ +L + + +N + G IP E L
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 391 LQILDISDNNISGSLPACFHPLS-IKQVHLSKNMLHGQL 428
L ILD+S N + G +P L+ + ++ LS N L G +
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 117/425 (27%), Positives = 183/425 (43%), Gaps = 74/425 (17%)
Query: 6 ALNTSFLQIIGESMPSLKYLS-------LSDSNSSRILDRGLCSLVH--LQELYIDNNDL 56
L+ SF + GE SL LS LS +N S + LC LQELY+ NN
Sbjct: 344 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 403
Query: 57 RGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFN 116
G +P L+N + L L +S N L+G+I SS L L+ + +L L N + I E +
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 117 HSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVD 176
+ L+ + N + EI P L + +L ++
Sbjct: 463 KT-LETLILDFNDLTGEI----------------------------PSGLSNCTNLNWIS 493
Query: 177 LSHIKMNGEFPTWL--LENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGH 234
LS+ ++ GE P W+ LEN L L + N+S +G + + L LD++TN F G
Sbjct: 494 LSNNRLTGEIPKWIGRLEN---LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 235 IPVEI----GDVLPS-------LYVFNNSMNA-LDGSIPSSFGNM-KFLQILDLSNNHLT 281
IP + G + + +Y+ N+ M G+ GN+ +F I N L+
Sbjct: 551 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA-----GNLLEFQGIRSEQLNRLS 605
Query: 282 GEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCS 341
P ++ GH N ++ L + N G IP+ +
Sbjct: 606 TRNPCNIT------------SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 342 SLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNI 401
L L+L +N +SG IP +G+L L + + +N L+G IP L L +D+S+NN+
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 402 SGSLP 406
SG +P
Sbjct: 714 SGPIP 718
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 75/258 (29%), Positives = 120/258 (46%), Gaps = 20/258 (7%)
Query: 46 LQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHF 105
L+ L +D NDL G +P L+N T+L + +S+N+LTG I + L ++ L LSNN F
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSF 523
Query: 106 Q--IPISLEP------------FFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLS 151
IP L FN + + ++ +I A + K +
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 583
Query: 152 LSSGYEDGVTFPKFLYHQ-HDLEYVDLSHI--KMNGEFPTWLLENNTKLIQLSVVNDSLA 208
G + + F Q + L + +I ++ G + +NN ++ L + + L+
Sbjct: 584 CH-GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 642
Query: 209 GPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMK 268
G I S L +L++ N+ G IP E+GD L L + + S N LDG IP + +
Sbjct: 643 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALT 701
Query: 269 FLQILDLSNNHLTGEIPE 286
L +DLSNN+L+G IPE
Sbjct: 702 MLTEIDLSNNNLSGPIPE 719
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 136/298 (45%), Gaps = 39/298 (13%)
Query: 177 LSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRL--PIHSHKQLRLLDISTNNFRGH 234
LS+ +NG + + + L L + +SL+GP + S L+ L++S+N
Sbjct: 81 LSNSHINGSVSGF--KCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 235 IPVEIGDVLPSLYVFNNSMNALDGS------IPSSFGNMKFLQILDLSNNHLTGEIPEHL 288
V G L SL V + S N++ G+ + G +K L I S N ++G++
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDVD--- 192
Query: 289 AVGCVXXXXXXXXXXXXXGHMFSRNF--------NLANLKLLQLEGNRFVGEIPQSLSKC 340
CV + S NF + + L+ L + GN+ G+ +++S C
Sbjct: 193 VSRCVNLEFL---------DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTC 243
Query: 341 SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFC--QLDSLQILDISD 398
+ L+ L++++N G IP L LQY+ + N G IP +F D+L LD+S
Sbjct: 244 TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIP-DFLSGACDTLTGLDLSG 300
Query: 399 NNISGSLPACF-HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
N+ G++P F ++ + LS N G+L T L LDLS+N +G +P+
Sbjct: 301 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 358
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
Query: 1 MSTRIALNTSFLQIIGESMP------SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNN 54
+STR N + G + P S+ +L +S + S + + + S+ +L L + +N
Sbjct: 604 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 663
Query: 55 DLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPI 109
D+ GS+P + ++ L ILD+SSN+L G I + + LT + E+ LSNN+ PI
Sbjct: 664 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-MSALTMLTEIDLSNNNLSGPI 717
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 27/170 (15%)
Query: 260 IPSSFGNMKFLQILDLSN-NHLTGEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFNLAN 318
IPSS N+ +L L + N+L G IP +A L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIA-------------------------KLTQ 102
Query: 319 LKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLE 378
L L + G IP LS+ +L L + N+LSG +P + +L L I N +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 379 GLIPVEFCQLDSL-QILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQ 427
G IP + L + IS N ++G +P F L++ V LS+NML G
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGD 212
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 101/221 (45%), Gaps = 16/221 (7%)
Query: 195 TKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMN 254
T+L L + + +++G + K L LD S N G +P I LP+L N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS-LPNLVGITFDGN 159
Query: 255 ALDGSIPSSFGNM-KFLQILDLSNNHLTGEIPEHLA-VGCVXXXXXXXXXXXXXGHMFSR 312
+ G+IP S+G+ K + +S N LTG+IP A + +F
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS 219
Query: 313 NFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIM 372
+ N + L + +G++ LSK +L GL L NN + G +P+ L L +L + +
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKV--GLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275
Query: 373 PNNHLEGLIPVEFCQLDSLQILDIS----DNNISGS-LPAC 408
N+L G IP Q +LQ D+S + + GS LPAC
Sbjct: 276 SFNNLCGEIP----QGGNLQRFDVSAYANNKCLCGSPLPAC 312
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 333 IPQSLSKCSSLEGLHLNN-NSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSL 391
IP SL+ L L++ N+L G IP + LT L Y+ + + ++ G IP Q+ +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 392 QILDISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVT-LDLSYNRL 449
LD S N +SG+LP L ++ + N + G + ++ + S L T + +S NRL
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRL 186
Query: 450 NGSIP 454
G IP
Sbjct: 187 TGKIP 191
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 66/252 (26%), Positives = 108/252 (42%), Gaps = 42/252 (16%)
Query: 40 LCSLVHLQELYIDN-NDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 98
L +L +L LYI N+L G +P +A +T L L ++ ++G+I L + ++ L
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTL 130
Query: 99 MLSNNHFQ--IPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGY 156
S N +P S+ N + F + N+I+ I S+ F + +++S
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITF---DGNRISGAIPDSYGSFSKLF--TSMTISRNR 185
Query: 157 EDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWL-LENNTKLIQLSVVNDSLAGPFRL-P 214
G P F +L +VDLS + G+ + NT+ I L+ +SLA F L
Sbjct: 186 LTGKIPPTF--ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA--KNSLA--FDLGK 239
Query: 215 IHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 274
+ K L LD+ N G ++P +KFL L+
Sbjct: 240 VGLSKNLNGLDLRNNRIYG-------------------------TLPQGLTQLKFLHSLN 274
Query: 275 LSNNHLTGEIPE 286
+S N+L GEIP+
Sbjct: 275 VSFNNLCGEIPQ 286
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 12 LQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLR 71
L ++G+++P+L L +S + + + L L LQELY+ N+L+ P L L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 72 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIPISLEPFFNHSRLKFFYAENNQ- 129
L +++NQLT + + L L +++ L+L N + IP + FF L F + N
Sbjct: 152 KLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP---KGFFGSHLLPFAFLHGNPW 207
Query: 130 -INAEI 134
N EI
Sbjct: 208 LCNCEI 213
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 18/107 (16%)
Query: 36 LDRGLCSLVHLQ---------ELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS 86
LDR C L LQ L + +N L+ SLP + +L +LDVS N+LT S+
Sbjct: 62 LDR--CELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL 117
Query: 87 SPLVHLTSIEELMLSNNHFQI--PISLEPFFNHSRLKFFYAENNQIN 131
L L ++EL L N + P L P +L+ NNQ+
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTP---TPKLEKLSLANNQLT 161
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 63/126 (50%), Gaps = 7/126 (5%)
Query: 12 LQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLR 71
L ++G+++P+L L +S + + + L L LQELY+ N+L+ P L L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 72 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIPISLEPFFNHSRLKFFYAENNQ- 129
L +++NQLT + + L L +++ L+L N + IP + FF L F + N
Sbjct: 152 KLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIP---KGFFGSHLLPFAFLHGNPW 207
Query: 130 -INAEI 134
N EI
Sbjct: 208 LCNCEI 213
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 12 LQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLR 71
L ++G+++P+L L +S + + + L L LQELY+ N+L+ P L L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 72 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIPISLEPFFNHSRLKFFYAENNQ- 129
L +++NQLT + + L L +++ L+L N + IP FF L F + N
Sbjct: 152 KLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLLPFAFLHGNPW 207
Query: 130 -INAEI 134
N EI
Sbjct: 208 LCNCEI 213
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 18/107 (16%)
Query: 36 LDRGLCSLVHLQ---------ELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS 86
LDR C L LQ L + +N L+ SLP + +L +LDVS N+LT S+
Sbjct: 62 LDR--CELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL 117
Query: 87 SPLVHLTSIEELMLSNNHFQI--PISLEPFFNHSRLKFFYAENNQIN 131
L L ++EL L N + P L P +L+ NNQ+
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTP---TPKLEKLSLANNQLT 161
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 12 LQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLR 71
L ++G+++P+L L +S + + + L L LQELY+ N+L+ P L L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 72 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIPISLEPFFNHSRLKFFYAENNQ- 129
L +++NQLT + + L L +++ L+L N + IP FF L F + N
Sbjct: 152 KLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLLPFAFLHGNPW 207
Query: 130 -INAEI 134
N EI
Sbjct: 208 LCNCEI 213
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 18/107 (16%)
Query: 36 LDRGLCSLVHLQ---------ELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS 86
LDR C L LQ L + +N L+ SLP + +L +LDVS N+LT S+
Sbjct: 62 LDR--CELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL 117
Query: 87 SPLVHLTSIEELMLSNNHFQI--PISLEPFFNHSRLKFFYAENNQIN 131
L L ++EL L N + P L P +L+ NNQ+
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTP---TPKLEKLSLANNQLT 161
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 12 LQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLR 71
L ++G+++P+L L +S + + + L L LQELY+ N+L+ P L L
Sbjct: 93 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 152
Query: 72 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIPISLEPFFNHSRLKFFYAENNQ- 129
L +++N LT + + L L +++ L+L N + IP FF L F + N
Sbjct: 153 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLLPFAFLHGNPW 208
Query: 130 -INAEI 134
N EI
Sbjct: 209 LCNCEI 214
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 12 LQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLR 71
L ++G+++P+L L +S + + + L L LQELY+ N+L+ P L L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 72 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIPISLEPFFNHSRLKFFYAENNQ- 129
L +++N LT + + L L +++ L+L N + IP + FF L F + N
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIP---KGFFGSHLLPFAFLHGNPW 207
Query: 130 -INAEI 134
N EI
Sbjct: 208 LCNCEI 213
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 12 LQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLR 71
L ++G+++P+L L +S + + + L L LQELY+ N+L+ P L L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 72 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIPISLEPFFNHSRLKFFYAENNQ- 129
L +++N LT + + L L +++ L+L N + IP FF L F + N
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLLPFAFLHGNPW 207
Query: 130 -INAEI 134
N EI
Sbjct: 208 LCNCEI 213
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 12 LQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLR 71
L ++G+++P+L L +S + + + L L LQELY+ N+L+ P L L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 72 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIPISLEPFFNHSRLKFFYAENNQ- 129
L +++N LT + + L L +++ L+L N + IP FF L F + N
Sbjct: 152 KLSLANNDLT-ELPAGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLLPFAFLHGNPW 207
Query: 130 -INAEI 134
N EI
Sbjct: 208 LCNCEI 213
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 12 LQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLR 71
L ++G+++P+L L +S + + + L L LQELY+ N+L+ P L L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 72 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIPISLEPFFNHSRLKFFYAENNQ- 129
L +++N LT + + L L +++ L+L N + IP FF L F + N
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLLPFAFLHGNPW 207
Query: 130 -INAEI 134
N EI
Sbjct: 208 LCNCEI 213
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 12 LQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLR 71
L ++G+++P+L L +S + + + L L LQELY+ N+L+ P L L
Sbjct: 92 LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151
Query: 72 ILDVSSNQLTGSISSSPLVHLTSIEELMLSNNH-FQIPISLEPFFNHSRLKFFYAENNQ- 129
L +++N LT + + L L +++ L+L N + IP FF L F + N
Sbjct: 152 KLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKG---FFGSHLLPFAFLHGNPW 207
Query: 130 -INAEI 134
N EI
Sbjct: 208 LCNCEI 213
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 14/147 (9%)
Query: 314 FNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMP 373
F+ N+K + G R V + S K S L +NN L+ + G+LT L+ +I+
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPS--KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356
Query: 374 NNHLEGL--IPVEFCQLDSLQILDISDNNISGSLPA--CFHPLSIKQVHLSKNMLHGQLK 429
N L+ L I Q+ SLQ LDIS N++S C S+ +++S N+L
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL----- 411
Query: 430 RGTFFNC--SSLVTLDLSYNRLNGSIP 454
T F C + LDL N++ SIP
Sbjct: 412 TDTIFRCLPPRIKVLDLHSNKIK-SIP 437
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 38/109 (34%)
Query: 172 LEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNF 231
++Y+D+S K N E L +N KL+++S H L+ LD+S N F
Sbjct: 57 IQYLDISVFKFNQELEYLDLSHN-KLVKISC-------------HPTVNLKHLDLSFNAF 102
Query: 232 RGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 280
D LP I FGNM L+ L LS HL
Sbjct: 103 ---------DALP---------------ICKEFGNMSQLKFLGLSTTHL 127
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 43 LVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 102
LV+L EL +D N L+ P ++T L L + N+L S+ LTS++EL L N
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYN 166
Query: 103 NHFQ-IPISLEPFFNHSRLKFFYAENNQI 130
N + +P F + LK +NNQ+
Sbjct: 167 NQLKRVPEG--AFDKLTELKTLKLDNNQL 193
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 14/159 (8%)
Query: 246 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXXXXXXXXX 305
LY+ +N + L I F +K L+ L +++N L + L +G
Sbjct: 66 LYLNDNKLQTLPAGI---FKELKNLETLWVTDNKL-----QALPIGVFDQLVNLAELRLD 117
Query: 306 XGHMFS---RNFN-LANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPR-W 360
+ S R F+ L L L L N K +SL+ L L NN L R+P
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGA 176
Query: 361 LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDN 399
LT L+ + + NN L+ + F L+ L++L + +N
Sbjct: 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 361 LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLS-IKQVHL 419
L LT L Y+I+ N L+ L F +L +L+ L + +N + F L+ + ++L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 420 SKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
+ N L L +G F ++L LDLSYN+L S+P+
Sbjct: 141 AHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPE 174
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 17/178 (9%)
Query: 22 LKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81
L++L+LS + S I L L+ LQE+ + L P+ + LR+L+VS NQLT
Sbjct: 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
Query: 82 GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHS-RLKFFYAENNQINAEITQSHS- 139
++ S + ++E L+L +N L F RL F + E Q
Sbjct: 310 -TLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGKEF 368
Query: 140 ------LIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLL 191
L+P F R + V F+ H +++V + +G+ P +L
Sbjct: 369 KDFPDVLLPNYFTCRRARIRDRKAQQV----FVDEGHTVQFV----CRADGDPPPAIL 418
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 320 KLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEG 379
+LL L NR + LE L LN N +S P NL L+ + + +N L+
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK- 93
Query: 380 LIPVE-FCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNML 424
LIP+ F L +L LDIS+N I L F L ++K + + N L
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 96/235 (40%), Gaps = 16/235 (6%)
Query: 220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279
+ RLLD+ N + E P L + N + P +F N+ L+ L L +N
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFAS-FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 280 LTGEIPEHLAVGC---VXXXXXXXXXXXXXGHMFSRNFNLANLKLLQLEGNRFVGEIPQS 336
L IP + G +MF +L NLK L++ N V ++
Sbjct: 92 LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQ---DLYNLKSLEVGDNDLVYISHRA 147
Query: 337 LSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDI 396
S +SLE L L +L+ L +L L + + + ++ + F +L L++L+I
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207
Query: 397 SD-NNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT---LDLSYN 447
S + P C + L++ + ++ H L + LV L+LSYN
Sbjct: 208 SHWPYLDTMTPNCLYGLNLTSLSIT----HCNLTAVPYLAVRHLVYLRFLNLSYN 258
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 39 GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 98
GL L L+ LY+ NN + L+ +T L L + NQ+ + PL LT ++ L
Sbjct: 127 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIV---PLARLTKLQNL 181
Query: 99 MLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPP 143
LS NH +L N L+ F E +N I +L+ P
Sbjct: 182 YLSKNHISDLRALRGLKNLDVLELFSQE--ALNKPINHQSNLVVP 224
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 322 LQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLI 381
L L+GN+F +P+ LS L + L+NN +S + N+T L +I+ N L +
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 382 PVEFCQLDSLQILDISDNNISGSLPACFHPLS 413
P F L SL++L + N+IS F+ LS
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 7/109 (6%)
Query: 316 LANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN 375
L ++K L L + P L+ S+L+ L+L+ N ++ P L LT LQY+ + NN
Sbjct: 112 LQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNN 167
Query: 376 HLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNML 424
+ L P L L L DN IS P P ++ +VHL N +
Sbjct: 168 QVNDLTP--LANLSKLTTLRADDNKISDISPLASLP-NLIEVHLKDNQI 213
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 29/151 (19%)
Query: 1 MSTRIALNTSFLQIIG-ESMPSLKYLSLSDSNSSRILD-RGLCSLVHLQELYIDNNDLRG 58
++T A NT I G + + +L L L D+ +I D L +L + EL + N L+
Sbjct: 49 IATLSAFNTGVTTIEGIQYLNNLIGLELKDN---QITDLTPLKNLTKITELELSGNPLKN 105
Query: 59 SLPWCLANMTSLRILDVSSNQLT-----GSISS--------------SPLVHLTSIEELM 99
+A + S++ LD++S Q+T +S+ SPL LT+++ L
Sbjct: 106 V--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS 163
Query: 100 LSNNHFQIPISLEPFFNHSRLKFFYAENNQI 130
+ NN L P N S+L A++N+I
Sbjct: 164 IGNNQVN---DLTPLANLSKLTTLRADDNKI 191
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 39 GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 98
GL L L+ LY+ NN + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 126 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 180
Query: 99 MLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPP 143
LS NH +L N L+ F E +N I +L+ P
Sbjct: 181 YLSKNHISDLRALAGLKNLDVLELFSQE--CLNKPINHQSNLVVP 223
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 17 ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
+++ +L L LS + S I L L LQ+L +N + P LAN+T+L LD+S
Sbjct: 126 KNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 77 SNQLTGSISSSPLVHLTSIEELMLSNNHF 105
SN+++ S L LT++E L+ +NN
Sbjct: 182 SNKVS---DISVLAKLTNLESLIATNNQI 207
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 14/142 (9%)
Query: 315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374
NL NL L+L N + +I +LS +SL+ L ++N ++ P L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 375 NHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHG-QLKR-GT 432
N + + +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 183 NKVSDI--SVLAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 234
Query: 433 FFNCSSLVTLDLSYNRLNGSIP 454
+ ++L LDL+ N+++ P
Sbjct: 235 LASLTNLTDLDLANNQISNLAP 256
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Query: 3 TRIALNTSFLQIIG--ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSL 60
T + LN + L+ I ++ +L YL+L +N S I + SL LQ L+ NN + S
Sbjct: 286 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFSNN--KVSD 341
Query: 61 PWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 102
LAN+T++ L NQ++ +PL +LT I +L L++
Sbjct: 342 VSSLANLTNINWLSAGHNQIS---DLTPLANLTRITQLGLND 380
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 29/136 (21%)
Query: 40 LCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT------------------ 81
L +L L ++ ++NN + P LAN+T+L L + +NQ+T
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 138
Query: 82 GSISS-SPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQIN-----AEIT 135
+IS S L LTS+++L S+N L+P N + L+ +N+++ A++T
Sbjct: 139 NTISDISALSGLTSLQQLSFSSNQV---TDLKPLANLTTLERLDISSNKVSDISVLAKLT 195
Query: 136 QSHSLIPPKFQLSRLS 151
SLI Q+S ++
Sbjct: 196 NLESLIATNNQISDIT 211
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 43 LVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 102
L +L EL ++ N L+ LA++T+L LD+++NQ++ + +PL LT + EL L
Sbjct: 216 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGA 270
Query: 103 NHF 105
N
Sbjct: 271 NQI 273
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 17 ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
+++ +L L LS + S I L L LQ+L +N + P LAN+T+L LD+S
Sbjct: 126 KNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 77 SNQLTGSISSSPLVHLTSIEELMLSNNHF 105
SN+++ S L LT++E L+ +NN
Sbjct: 182 SNKVS---DISVLAKLTNLESLIATNNQI 207
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 14/142 (9%)
Query: 315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374
NL NL L+L N + +I +LS +SL+ L ++N ++ P L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 375 NHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHG-QLKR-GT 432
N + + +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 183 NKVSDI--SVLAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 234
Query: 433 FFNCSSLVTLDLSYNRLNGSIP 454
+ ++L LDL+ N+++ P
Sbjct: 235 LASLTNLTDLDLANNQISNLAP 256
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 43 LVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 102
L +L EL ++ N L+ LA++T+L LD+++NQ++ + +PL LT + EL L
Sbjct: 216 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGA 270
Query: 103 NHF 105
N
Sbjct: 271 NQI 273
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 39 GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 98
GL L L+ LY+ NN + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 129 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 183
Query: 99 MLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPP 143
LS NH +L N L+ F E +N I +L+ P
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELFSQE--CLNKPINHQSNLVVP 226
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 39 GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 98
GL L L+ LY+ NN + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 127 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 181
Query: 99 MLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPP 143
LS NH +L N L+ F E +N I +L+ P
Sbjct: 182 YLSKNHISDLRALAGLKNLDVLELFSQE--CLNKPINHQSNLVVP 224
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 39 GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 98
GL L L+ LY+ NN + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 129 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 183
Query: 99 MLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPP 143
LS NH +L N L+ F E +N I +L+ P
Sbjct: 184 YLSKNHISDLRALAGLKNLDVLELFSQE--CLNKPINHQSNLVVP 226
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 17 ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
+++ +L L LS + S I L L LQ+L +N + P LAN+T+L LD+S
Sbjct: 126 KNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 77 SNQLTGSISSSPLVHLTSIEELMLSNNHF 105
SN+++ S L LT++E L+ +NN
Sbjct: 182 SNKVS---DISVLAKLTNLESLIATNNQI 207
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 76/142 (53%), Gaps = 14/142 (9%)
Query: 315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374
NL NL L+L N + +I +LS +SL+ L+ ++N ++ P L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISS 182
Query: 375 NHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHG-QLKR-GT 432
N + + +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 183 NKVSDI--SVLAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 234
Query: 433 FFNCSSLVTLDLSYNRLNGSIP 454
+ ++L LDL+ N+++ P
Sbjct: 235 LASLTNLTDLDLANNQISNLAP 256
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 103/243 (42%), Gaps = 42/243 (17%)
Query: 63 CLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKF 122
L+ +TSL+ L+ SSNQ+T PL +LT++E L +S+N + + L+
Sbjct: 146 ALSGLTSLQQLNFSSNQVT---DLKPLANLTTLERLDISSNKVS---DISVLAKLTNLES 199
Query: 123 FYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKM 182
A NNQI ++IT L L LSL+ + L + DL DL++ ++
Sbjct: 200 LIATNNQI-SDITPLGILT----NLDELSLNGNQLKDIGTLASLTNLTDL---DLANNQI 251
Query: 183 NGEFPTWLLENNTKLIQLSVVNDS------LAGPFRL--------------PIHSHKQLR 222
+ P L TKL +L + + LAG L PI + K L
Sbjct: 252 SNLAP---LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLT 308
Query: 223 LLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTG 282
L + NN PV L L+ +NN ++ + SS N+ + L +N ++
Sbjct: 309 YLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV-----SSLANLTNINWLSAGHNQISD 363
Query: 283 EIP 285
P
Sbjct: 364 LTP 366
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 29/136 (21%)
Query: 40 LCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT------------------ 81
L +L L ++ ++NN + P LAN+T+L L + +NQ+T
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 138
Query: 82 GSISS-SPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQIN-----AEIT 135
+IS S L LTS+++L S+N L+P N + L+ +N+++ A++T
Sbjct: 139 NTISDISALSGLTSLQQLNFSSNQV---TDLKPLANLTTLERLDISSNKVSDISVLAKLT 195
Query: 136 QSHSLIPPKFQLSRLS 151
SLI Q+S ++
Sbjct: 196 NLESLIATNNQISDIT 211
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 43 LVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 102
L +L EL ++ N L+ LA++T+L LD+++NQ++ + +PL LT + EL L
Sbjct: 216 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGA 270
Query: 103 NHF 105
N
Sbjct: 271 NQI 273
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 39 GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 98
GL L L+ LY+ NN + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 149 GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 203
Query: 99 MLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPP 143
LS NH +L N L+ F E +N I +L+ P
Sbjct: 204 YLSKNHISDLRALAGLKNLDVLELFSQE--CLNKPINHQSNLVVP 246
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 39 GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 98
GL L L+ LY+ NN + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 99 MLSNNHFQIPISLEPFFNHSRLKFFYAE 126
LS NH +L N L+ F E
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELFSQE 229
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 39 GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 98
GL L L+ LY+ NN + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 99 MLSNNHFQIPISLEPFFNHSRLKFFYAE 126
LS NH +L N L+ F E
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELFSQE 229
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 39 GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 98
GL L L+ LY+ NN + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 147 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 201
Query: 99 MLSNNHFQIPISLEPFFNHSRLKFFYAE 126
LS NH +L N L+ F E
Sbjct: 202 YLSKNHISDLRALAGLKNLDVLELFSQE 229
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 39 GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 98
GL L L+ LY+ NN + L+ +T L L + NQ++ + PL LT ++ L
Sbjct: 124 GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQNL 178
Query: 99 MLSNNHFQIPISLEPFFNHSRLKFFYAE 126
LS NH +L N L+ F E
Sbjct: 179 YLSKNHISDLRALAGLKNLDVLELFSQE 206
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 42 SLVHLQELYIDNNDLRGSLP-WCLANMTSLRILDVSSNQLTGSISS--SPLVHLTSIEEL 98
SL++L+ELY+ +N L G+LP ++T L +LD+ +NQLT S+ LVHL E
Sbjct: 62 SLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK--ELF 118
Query: 99 MLSNNHFQIPISLE 112
M N ++P +E
Sbjct: 119 MCCNKLTELPRGIE 132
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 392 QILDISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 450
QIL + DN I+ P F L ++K+++L N L G L G F + + L LDL N+L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 15/237 (6%)
Query: 173 EYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTN--N 230
++++L + K G+FPT L++ +L S + LP L LD+S N +
Sbjct: 331 QHLELVNCKF-GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP-----SLEFLDLSRNGLS 384
Query: 231 FRGHIP-VEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA 289
F+G + G + SL + S N + ++ S+F ++ L+ LD +++L ++ E
Sbjct: 385 FKGCCSQSDFGTI--SLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSV 440
Query: 290 VGCVXXXXXXXXXXXXXGHMFSRNFN-LANLKLLQLEGNRFVGE-IPQSLSKCSSLEGLH 347
+ F+ FN L++L++L++ GN F +P ++ +L L
Sbjct: 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500
Query: 348 LNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGS 404
L+ L P +L+ LQ + M +N+ L + L+SLQ+LD S N+I S
Sbjct: 501 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 557
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 18 SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
S P L+ L LS I D SL HL L + N ++ + ++SL+ L
Sbjct: 74 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133
Query: 78 NQLTGSISSSPLVHLTSIEELMLSNN---HFQIPISLEPFFNHSRLKFFYAENNQINA 132
L S+ + P+ HL +++EL +++N F++P E F N + L+ +N+I +
Sbjct: 134 TNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKIQS 187
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 38 RGLCSLVHLQELYI------DNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVH 91
+ L L HL++L + +N LR LP LA + L +L S N L + +
Sbjct: 451 KDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVAN 506
Query: 92 LTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAE 133
L ++EL+L NN Q +++P + RL + N + E
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 12/91 (13%)
Query: 17 ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDN--NDLRGSLPWCLANMTSLRILD 74
+++ +L L LS + S I L L LQ+L N DL+ LAN+T+L LD
Sbjct: 130 KNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTDLK-----PLANLTTLERLD 182
Query: 75 VSSNQLTGSISSSPLVHLTSIEELMLSNNHF 105
+SSN+++ S L LT++E L+ +NN
Sbjct: 183 ISSNKVS---DISVLAKLTNLESLIATNNQI 210
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Query: 3 TRIALNTSFLQIIG--ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSL 60
T + LN + L+ I ++ +L YL+L +N S I + SL LQ L+ NN + S
Sbjct: 289 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFANN--KVSD 344
Query: 61 PWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 102
LAN+T++ L NQ++ +PL +LT I +L L++
Sbjct: 345 VSSLANLTNINWLSAGHNQIS---DLTPLANLTRITQLGLND 383
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 43 LVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 102
L +L EL ++ N L+ LA++T+L LD+++NQ++ + +PL LT + EL L
Sbjct: 219 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGA 273
Query: 103 NHF 105
N
Sbjct: 274 NQI 276
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 15/142 (10%)
Query: 315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374
NL NL L+L N + +I +LS +SL+ L N ++ P L NLT L+ + + +
Sbjct: 131 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFGN-QVTDLKP--LANLTTLERLDISS 185
Query: 375 NHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHG-QLKR-GT 432
N + + +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 186 NKVSDI--SVLAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 237
Query: 433 FFNCSSLVTLDLSYNRLNGSIP 454
+ ++L LDL+ N+++ P
Sbjct: 238 LASLTNLTDLDLANNQISNLAP 259
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 30/136 (22%)
Query: 40 LCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 99
L +L L ++ ++NN + P LAN+T+L L + +NQ+T PL +LT++ L
Sbjct: 85 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLE 139
Query: 100 LSNNHF-------------------QIPISLEPFFNHSRLKFFYAENNQIN-----AEIT 135
LS+N Q+ L+P N + L+ +N+++ A++T
Sbjct: 140 LSSNTISDISALSGLTSLQQLSFGNQV-TDLKPLANLTTLERLDISSNKVSDISVLAKLT 198
Query: 136 QSHSLIPPKFQLSRLS 151
SLI Q+S ++
Sbjct: 199 NLESLIATNNQISDIT 214
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 38 RGLCSLVHLQELYI------DNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVH 91
+ L L HL++L + +N LR LP LA + L +L S N L + +
Sbjct: 451 KDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENV---DGVAN 506
Query: 92 LTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAE 133
L ++EL+L NN Q +++P + RL + N + E
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 12/91 (13%)
Query: 17 ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDN--NDLRGSLPWCLANMTSLRILD 74
+++ +L L LS + S I L L LQ+L N DL+ LAN+T+L LD
Sbjct: 131 KNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGNQVTDLK-----PLANLTTLERLD 183
Query: 75 VSSNQLTGSISSSPLVHLTSIEELMLSNNHF 105
+SSN+++ S L LT++E L+ +NN
Sbjct: 184 ISSNKVS---DISVLAKLTNLESLIATNNQI 211
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 43 LVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 102
L +L EL ++ N L+ LA++T+L LD+++NQ++ + +PL LT + EL L
Sbjct: 220 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGA 274
Query: 103 NHF 105
N
Sbjct: 275 NQI 277
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 15/142 (10%)
Query: 315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374
NL NL L+L N + +I +LS +SL+ L N ++ P L NLT L+ + + +
Sbjct: 132 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLSFGN-QVTDLKP--LANLTTLERLDISS 186
Query: 375 NHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHG-QLKR-GT 432
N + + +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 187 NKVSDI--SVLAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 238
Query: 433 FFNCSSLVTLDLSYNRLNGSIP 454
+ ++L LDL+ N+++ P
Sbjct: 239 LASLTNLTDLDLANNQISNLAP 260
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 316 LANLKLLQLEGNRFVGE-IPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374
L++L++L++ GN F +P ++ +L L L+ L P +L+ LQ + M +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 375 NHLEGLIPVEFCQLDSLQILDISDNNISGS 404
N+ L + L+SLQ+LD S N+I S
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 18 SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
S P L+ L LS I D SL HL L + N ++ + ++SL+ L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 78 NQLTGSISSSPLVHLTSIEELMLSNN---HFQIPISLEPFFNHSRLKFFYAENNQINA 132
L S+ + P+ HL +++EL +++N F++P E F N + L+ +N+I +
Sbjct: 110 TNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKIQS 163
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 12/91 (13%)
Query: 17 ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDN--NDLRGSLPWCLANMTSLRILD 74
+++ +L L LS + S I L L LQ+L N DL+ LAN+T+L LD
Sbjct: 126 KNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFGNQVTDLK-----PLANLTTLERLD 178
Query: 75 VSSNQLTGSISSSPLVHLTSIEELMLSNNHF 105
+SSN+++ S L LT++E L+ +NN
Sbjct: 179 ISSNKVS---DISVLAKLTNLESLIATNNQI 206
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Query: 3 TRIALNTSFLQIIG--ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSL 60
T + LN + L+ I ++ +L YL+L +N S I + SL LQ L+ NN + S
Sbjct: 285 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFSNN--KVSD 340
Query: 61 PWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 102
LAN+T++ L NQ++ +PL +LT I +L L++
Sbjct: 341 VSSLANLTNINWLSAGHNQIS---DLTPLANLTRITQLGLND 379
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 15/142 (10%)
Query: 315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374
NL NL L+L N + +I +LS +SL+ L+ N ++ P L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFGN-QVTDLKP--LANLTTLERLDISS 181
Query: 375 NHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHG-QLKR-GT 432
N + + +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 182 NKVSDI--SVLAKLTNLESLIATNNQISD-----ITPLGI-LTNLDELSLNGNQLKDIGT 233
Query: 433 FFNCSSLVTLDLSYNRLNGSIP 454
+ ++L LDL+ N+++ P
Sbjct: 234 LASLTNLTDLDLANNQISNLAP 255
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 43 LVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 102
L +L EL ++ N L+ LA++T+L LD+++NQ++ + +PL LT + EL L
Sbjct: 215 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGA 269
Query: 103 NHF 105
N
Sbjct: 270 NQI 272
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 30/136 (22%)
Query: 40 LCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 99
L +L L ++ ++NN + P LAN+T+L L + +NQ+T PL +LT++ L
Sbjct: 81 LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT---DIDPLKNLTNLNRLE 135
Query: 100 LSNNHF-------------------QIPISLEPFFNHSRLKFFYAENNQIN-----AEIT 135
LS+N Q+ L+P N + L+ +N+++ A++T
Sbjct: 136 LSSNTISDISALSGLTSLQQLNFGNQV-TDLKPLANLTTLERLDISSNKVSDISVLAKLT 194
Query: 136 QSHSLIPPKFQLSRLS 151
SLI Q+S ++
Sbjct: 195 NLESLIATNNQISDIT 210
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 12/91 (13%)
Query: 17 ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDN--NDLRGSLPWCLANMTSLRILD 74
+++ +L L LS + S I L L LQ+L N DL+ LAN+T+L LD
Sbjct: 126 KNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFGNQVTDLK-----PLANLTTLERLD 178
Query: 75 VSSNQLTGSISSSPLVHLTSIEELMLSNNHF 105
+SSN+++ S L LT++E L+ +NN
Sbjct: 179 ISSNKVS---DISVLAKLTNLESLIATNNQI 206
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 15/142 (10%)
Query: 315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374
NL NL L+L N + +I +LS +SL+ L+ N ++ P L NLT L+ + + +
Sbjct: 127 NLTNLNRLELSSNT-ISDI-SALSGLTSLQQLNFGN-QVTDLKP--LANLTTLERLDISS 181
Query: 375 NHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHG-QLKR-GT 432
N + + +L +L+ L ++N IS PL I +L + L+G QLK GT
Sbjct: 182 NKVSDI--SVLAKLTNLESLIATNNQISD-----ITPLGIL-TNLDELSLNGNQLKDIGT 233
Query: 433 FFNCSSLVTLDLSYNRLNGSIP 454
+ ++L LDL+ N+++ P
Sbjct: 234 LASLTNLTDLDLANNQISNLAP 255
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 43 LVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 102
L +L EL ++ N L+ LA++T+L LD+++NQ++ + +PL LT + EL L
Sbjct: 215 LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGA 269
Query: 103 NHF 105
N
Sbjct: 270 NQI 272
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 18 SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
S P L+ L LS I D SL HL L + N ++ + ++SL+ L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 78 NQLTGSISSSPLVHLTSIEELMLSNN---HFQIPISLEPFFNHSRLKFFYAENNQINA 132
L S+ + P+ HL +++EL +++N F++P E F N + L+ +N+I +
Sbjct: 110 TNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKIQS 163
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 18 SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
S P L+ L LS I D SL HL L + N ++ + ++SL+ L
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 111
Query: 78 NQLTGSISSSPLVHLTSIEELMLSNN---HFQIPISLEPFFNHSRLKFFYAENNQINA 132
L S+ + P+ HL +++EL +++N F++P E F N + L+ +N+I +
Sbjct: 112 TNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 18 SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
S P L+ L LS I D SL HL L + N ++ + ++SL+ L
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 78 NQLTGSISSSPLVHLTSIEELMLSNN---HFQIPISLEPFFNHSRLKFFYAENNQINA 132
L S+ + P+ HL +++EL +++N F++P E F N + L+ +N+I +
Sbjct: 111 TNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKIQS 164
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 18 SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
S P L+ L LS I D SL HL L + N ++ + ++SL+ L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109
Query: 78 NQLTGSISSSPLVHLTSIEELMLSNN---HFQIPISLEPFFNHSRLKFFYAENNQINA 132
L S+ + P+ HL +++EL +++N F++P E F N + L+ +N+I +
Sbjct: 110 TNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 18 SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
S P L+ L LS I D SL HL L + N ++ + ++SL+ L
Sbjct: 51 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 110
Query: 78 NQLTGSISSSPLVHLTSIEELMLSNN---HFQIPISLEPFFNHSRLKFFYAENNQINA 132
L S+ + P+ HL +++EL +++N F++P E F N + L+ +N+I +
Sbjct: 111 TNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKIQS 164
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 316 LANLKLLQLEGNRFVGE-IPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374
L++L++L++ GN F +P ++ +L L L+ L P +L+ LQ + M +
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 375 NHLEGLIPVEFCQLDSLQILDISDNNISGS 404
N+ L + L+SLQ+LD S N+I S
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 170 HDLEYVDLSH--IKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDIS 227
LE++D H +K EF +L N LI L + + F + L +L ++
Sbjct: 101 EQLEHLDFQHSNLKQMSEFSVFLSLRN--LIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 158
Query: 228 TNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 280
N+F+ + +I L +L + S L+ P++F ++ LQ+L++S+N+
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 10/125 (8%)
Query: 311 SRNF-NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQY 369
SR F L +LK+L L N+ ++ +L+ L+L+ N L L + Y
Sbjct: 283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342
Query: 370 IIMPNNHLEGLIPVEFCQLDSLQILDISDNNISG-----SLPACF----HPLSIKQVHLS 420
I + NH+ + F L+ LQ LD+ DN ++ S+P F +++ +++L+
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLT 402
Query: 421 KNMLH 425
N++H
Sbjct: 403 ANLIH 407
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 20 PSLKYLSLSDSNSSRILDRGLC-----SLVHLQELYIDNNDLRGSLPWCLANMTSLRILD 74
PSL+ L L ++ + LC L HLQ LY+++N L P +++T+LR L
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510
Query: 75 VSSNQLT 81
++SN+LT
Sbjct: 511 LNSNRLT 517
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 12/99 (12%)
Query: 341 SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGL----IPVEFCQLDSLQILDI 396
S L+ L+LN+N L+ P +LT L+ + + +N L L +P +L+ILDI
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA------NLEILDI 533
Query: 397 SDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFN 435
S N + P F LS+ + +K + +L TF N
Sbjct: 534 SRNQLLAPNPDVFVSLSVLDITHNKFICECEL--STFIN 570
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 17 ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
E + +L+YL+L N I + L +LV L+EL + N L P +TSLR L +
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPN--LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLM 210
Query: 77 SNQLTGSISSSPLVHLTSIEELMLSNNHF 105
Q+ +I + L S+EEL LS+N+
Sbjct: 211 HAQV-ATIERNAFDDLKSLEELNLSHNNL 238
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 2 STRIALNTSFLQIIGESMP-SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSL 60
++R+ L + S+P + +YL+L +++ I L HL+ L + N +R
Sbjct: 16 ASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIE 75
Query: 61 PWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRL 120
+ SL L++ N+LT ++ + +L+ + EL L NN PI P + +R+
Sbjct: 76 VGAFNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNN----PIESIPSYAFNRV 130
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 90/211 (42%), Gaps = 10/211 (4%)
Query: 219 KQLRLLDISTNNFRGHIPVEIG--DVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLS 276
+ L +L +S N R +E+G + LPSL N L +F + L+ L L
Sbjct: 59 RHLEILQLSKNLVRK---IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLR 115
Query: 277 NNHLTGEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFN-LANLKLLQLEGNRFVGEIPQ 335
NN + IP + ++ F L NL+ L L G + +IP
Sbjct: 116 NNPIES-IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL-GMCNLKDIP- 172
Query: 336 SLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILD 395
+L+ LE L L+ N L P LT L+ + + + + + F L SL+ L+
Sbjct: 173 NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELN 232
Query: 396 ISDNNISGSLPACFHPL-SIKQVHLSKNMLH 425
+S NN+ F PL +++VHL+ N H
Sbjct: 233 LSHNNLMSLPHDLFTPLHRLERVHLNHNPWH 263
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 17 ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
E + +L+YL+L N I + L +LV L+EL + N L P +TSLR L +
Sbjct: 153 EGLVNLRYLNLGMCNLKDIPN--LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLM 210
Query: 77 SNQLTGSISSSPLVHLTSIEELMLSNNHF 105
Q+ +I + L S+EEL LS+N+
Sbjct: 211 HAQV-ATIERNAFDDLKSLEELNLSHNNL 238
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 2 STRIALNTSFLQIIGESMP-SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSL 60
++R+ L + S+P + +YL+L +++ I L HL+ L + N +R
Sbjct: 16 ASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIE 75
Query: 61 PWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRL 120
+ SL L++ N+LT ++ + +L+ + EL L NN PI P + +R+
Sbjct: 76 VGAFNGLPSLNTLELFDNRLT-TVPTQAFEYLSKLRELWLRNN----PIESIPSYAFNRV 130
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 316 LANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN 375
L NL+ L L G + +IP +L+ LE L L+ N L P LT L+ + + +
Sbjct: 155 LVNLRYLNL-GMCNLKDIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHA 212
Query: 376 HLEGLIPVEFCQLDSLQILDISDNNISGSLP-ACFHPL-SIKQVHLSKNMLH 425
+ + F L SL+ L++S NN+ SLP F PL +++VHL+ N H
Sbjct: 213 QVATIERNAFDDLKSLEELNLSHNNLM-SLPHDLFTPLHRLERVHLNHNPWH 263
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 18 SMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
S P L+ L LS I D SL HL L + N ++ + ++SL+ L
Sbjct: 52 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALE 111
Query: 78 NQLTGSISSSPLVHLTSIEELMLSNN---HFQIPISLEPFFNHSRLKFFYAENNQINA 132
L S+ + P+ HL +++EL +++N F++P E F N + L+ +N+I +
Sbjct: 112 TNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLP---EYFSNLTNLEHLDLSSNKIQS 165
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 8/112 (7%)
Query: 24 YLSLSDSNSSRILDRGLC-SLVHLQELYIDNNDLRGSLPWCLAN-MTSLRILDVSSNQLT 81
YL L ++NS + L G+ L L +LY+ N L+ SLP + N +TSL L++S+NQL
Sbjct: 32 YLDL-ETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 82 GSISSSPLVHLTSIEELMLSNNHFQ-IPISLEPFFNHSRLKFFYAENNQINA 132
S+ + LT ++EL L+ N Q +P + F ++LK NQ+ +
Sbjct: 90 -SLPNGVFDKLTQLKELALNTNQLQSLPDGV--FDKLTQLKDLRLYQNQLKS 138
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 372 MPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSI-KQVHLSKNMLHGQLKR 430
+ +N L L P F + L ILD N+IS P L + K ++L N L Q+
Sbjct: 32 LTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNEL-SQISD 90
Query: 431 GTFFNCSSLVTLDLSYNRL 449
TF C++L LDL N +
Sbjct: 91 QTFVFCTNLTELDLMSNSI 109
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 316 LANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN 375
L NL L L N SL+ L LHLNNN L ++P L + ++Q + + NN
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273
Query: 376 HLEGLIPVEFC 386
++ + +FC
Sbjct: 274 NISAIGSNDFC 284
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 356 RIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL-SI 414
++P+ L T L + + NN + + +F L +L L + +N IS P F PL +
Sbjct: 45 KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 415 KQVHLSKNML 424
++++LSKN L
Sbjct: 103 ERLYLSKNQL 112
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 316 LANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN 375
L NL L L N SL+ L LHLNNN L ++P L + ++Q + + NN
Sbjct: 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNN 273
Query: 376 HLEGLIPVEFC 386
++ + +FC
Sbjct: 274 NISAIGSNDFC 284
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 356 RIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL-SI 414
++P+ L T L + + NN + + +F L +L L + +N IS P F PL +
Sbjct: 45 KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 415 KQVHLSKNML 424
++++LSKN L
Sbjct: 103 ERLYLSKNQL 112
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 15 IGESMPSL-KYLSLSDSNSSRI-LDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRI 72
+ +S+PS L LS +N SR+ + L +L L + +N L + +LR
Sbjct: 33 VPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY 92
Query: 73 LDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQI 130
LD+SSN L ++ L ++E L+L NNH + + F + ++L+ Y NQI
Sbjct: 93 LDLSSNHL-HTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYLSQNQI 148
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 333 IPQSLSKCSSLEGLHLNNNSLSGRIPRWL-GNLTWLQYIIMPNNHLEGLIPVEFCQLDSL 391
+PQSL ++L L L++N+LS W LT L +++ +NHL + F + +L
Sbjct: 33 VPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL 90
Query: 392 QILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
+ LD+S N++ F L +V L N + R F + + L L LS N++
Sbjct: 91 RYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 361 LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLS-IKQVHL 419
L LT L Y+I+ N L+ L F +L +L+ L + +N + F L+ + ++L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 420 SKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
N L L +G F ++L LDL N+L S+P+
Sbjct: 141 YHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQ-SLPE 174
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 17 ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVS 76
+ + +LK L L ++ + D L +L LY+ +N L+ +T+L LD+
Sbjct: 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLD 165
Query: 77 SNQLTGSISSSPLVHLTSIEELMLSNNHFQ 106
+NQL S+ LT +++L L++N +
Sbjct: 166 NNQLQ-SLPEGVFDKLTQLKQLSLNDNQLK 194
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 336 SLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFC 386
SLS +L LHL+NN LS R+P L +L LQ + + N++ + +FC
Sbjct: 236 SLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 3 TRIALNTSFLQIIGESMPS-LKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLP 61
+++ L + + +PS +YL+L ++N I L HL+ L + N +R
Sbjct: 57 SKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV 116
Query: 62 WCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRL 120
+ SL L++ N LT I S +L+ + EL L NN PI P + +R+
Sbjct: 117 GAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNN----PIESIPSYAFNRV 170
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 67/164 (40%), Gaps = 28/164 (17%)
Query: 316 LANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSG-------RIPRW----LGNL 364
LA+L L+L N + S L L L NN + R+P LG L
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181
Query: 365 TWLQYIIMPNNHLEGLIPVEFCQLD--------------SLQILDISDNNISGSLPACFH 410
L+YI EGL +++ L L+ L++S N+ P FH
Sbjct: 182 KKLEYI--SEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFH 239
Query: 411 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 454
LS + N ++R F +SLV L+L++N L+ S+P
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLP 282
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 221 LRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 280
L++ +IS N F+ D L LY+ NS+ L P+ N+ L++LDLS+N L
Sbjct: 234 LQIFNISANIFKY-------DFLTRLYLNGNSLTEL----PAEIKNLSNLRVLDLSHNRL 282
Query: 281 TGEIPEHLAVGCVXXXXXXXXXXXXXGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKC 340
T +P L G + NL NL+ L +EGN + + L++
Sbjct: 283 TS-LPAEL--GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE- 338
Query: 341 SSLEGL 346
S+ GL
Sbjct: 339 KSVTGL 344
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 46 LQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81
L LY++ N L LP + N+++LR+LD+S N+LT
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 43 LVHLQELYIDNNDLRGSLP-WCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 101
L L +LY+ N L+ SLP +T L+ L +++NQL SI + LT+++ L LS
Sbjct: 106 LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 102 NNHFQ 106
N Q
Sbjct: 164 TNQLQ 168
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 43 LVHLQELYIDNNDLRGSLP-WCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 101
L L +LY+ N L+ SLP +T L+ L +++NQL SI + LT+++ L LS
Sbjct: 106 LTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 102 NNHFQ 106
N Q
Sbjct: 164 TNQLQ 168
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 24/110 (21%)
Query: 40 LCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT-----GSISS-------- 86
L +L + EL + N L+ +A + S++ LD++S Q+T +S+
Sbjct: 81 LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL 138
Query: 87 ------SPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQI 130
SPL LT+++ L + N L P N S+L A++N+I
Sbjct: 139 NQITNISPLAGLTNLQYLSIGNAQVS---DLTPLANLSKLTTLKADDNKI 185
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 324 LEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN-HLEGLIP 382
L GNR S C +L L L++N+L+G LT L+ + + +N L + P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 383 VEFCQLDSLQILDISDNNISGSLPACFHPLSIKQ-VHLSKNMLHGQLKRGTFFNCSSLVT 441
F L L L + + P F L+ Q ++L N L L TF + +L
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLGNLTH 156
Query: 442 LDLSYNRLNGSIPD 455
L L NR+ S+P+
Sbjct: 157 LFLHGNRIP-SVPE 169
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 317 ANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNH 376
ANL++L L+ +R + SLE L L++N LS W G L+ L+Y+ + N
Sbjct: 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109
Query: 377 LEGL-IPVEFCQLDSLQILDISD 398
+ L + F L +LQ L I +
Sbjct: 110 YQTLGVTSLFPNLTNLQTLRIGN 132
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 77/166 (46%), Gaps = 34/166 (20%)
Query: 316 LANLKLLQLEGNRFVGEIPQSLSKCS----SLEGLHLNNNSL-----SGRIPRWLGNLT- 365
L +L+ L L N V E ++ S C SL+ L L+ N L +G I L NLT
Sbjct: 333 LKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391
Query: 366 ----------------WLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF 409
W + + N G+ V+ C +L++LD+S+NN+ + F
Sbjct: 392 LDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF--SLF 449
Query: 410 HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
P ++++++S+N L L + F L+ + +S N+L S+PD
Sbjct: 450 LP-RLQELYISRNKLK-TLPDASLFPV--LLVMKISRNQLK-SVPD 490
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 8/98 (8%)
Query: 7 LNTSFLQIIGESMP-SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLA 65
L+++ ++++ +P +L+ L +S++N LD L LQELYI N L+ +LP +
Sbjct: 417 LSSTGIRVVKTCIPQTLEVLDVSNNN----LDSFSLFLPRLQELYISRNKLK-TLPDA-S 470
Query: 66 NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 103
L ++ +S NQL S+ LTS++++ L N
Sbjct: 471 LFPVLLVMKISRNQLK-SVPDGIFDRLTSLQKIWLHTN 507
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 367 LQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNMLH 425
LQ +I+ ++ + + F L SL+ LD+SDN++S + F PL S+K ++L N
Sbjct: 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
Query: 426 GQLKRGTFFNCSSLVTLDL 444
F N ++L TL +
Sbjct: 112 TLGVTSLFPNLTNLQTLRI 130
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 317 ANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNH 376
ANL++L L+ +R + SLE L L++N LS W G L+ L+Y+ + N
Sbjct: 76 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 135
Query: 377 LEGL-IPVEFCQLDSLQILDISD 398
+ L + F L +LQ L I +
Sbjct: 136 YQTLGVTSLFPNLTNLQTLRIGN 158
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 7 LNTSFLQIIGESMP-SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLA 65
L+++ ++++ +P +L+ L +S++N LD L LQELYI N L+ +LP +
Sbjct: 443 LSSTGIRVVKTCIPQTLEVLDVSNNN----LDSFSLFLPRLQELYISRNKLK-TLPDA-S 496
Query: 66 NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 103
L ++ ++SNQL S+ LTS++++ L N
Sbjct: 497 LFPVLLVMKIASNQL-KSVPDGIFDRLTSLQKIWLHTN 533
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 34/166 (20%)
Query: 316 LANLKLLQLEGNRFVGEIPQSLSKCS----SLEGLHLNNNSL-----SGRIPRWLGNLT- 365
L +L+ L L N V E ++ S C SL+ L L+ N L +G I L NLT
Sbjct: 359 LKSLEFLDLSENLMVEEYLKN-SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 417
Query: 366 ----------------WLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF 409
W + + N G+ V+ C +L++LD+S+NN+ + F
Sbjct: 418 LDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF--SLF 475
Query: 410 HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455
P ++++++S+N L L + F L+ + ++ N+L S+PD
Sbjct: 476 LP-RLQELYISRNKLK-TLPDASLFPV--LLVMKIASNQLK-SVPD 516
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 367 LQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNMLH 425
LQ +I+ ++ + + F L SL+ LD+SDN++S + F PL S+K ++L N
Sbjct: 78 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 137
Query: 426 GQLKRGTFFNCSSLVTLDL 444
F N ++L TL +
Sbjct: 138 TLGVTSLFPNLTNLQTLRI 156
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 10 SFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTS 69
+ L+ + L+ L+L+ + ++I D L HL +L + N L N+
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348
Query: 70 LRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQ 106
L +LD+S N + ++ + L +++EL L N +
Sbjct: 349 LEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK 384
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 2/144 (1%)
Query: 312 RNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYII 371
+ + +K L ++ + S + LE L L N ++ LT L +
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329
Query: 372 MPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKR 430
+ N L + F LD L++LD+S N+I F L ++K++ L N L +
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPD 388
Query: 431 GTFFNCSSLVTLDLSYNRLNGSIP 454
G F +SL + L N + S P
Sbjct: 389 GIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 336 SLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILD 395
S S S L+ L L+ + + L L +I+ N ++ P F L SL+ L
Sbjct: 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110
Query: 396 ISDNNISG--SLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
+ ++ S P +++K+++++ N +H F N ++LV +DLSYN +
Sbjct: 111 AVETKLASLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 22 LKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81
L++L LS I D+ L HL L + N ++ P + +TSL L +L
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL- 116
Query: 82 GSISSSPLVHLTSIEELMLSNN 103
S+ S P+ L ++++L +++N
Sbjct: 117 ASLESFPIGQLITLKKLNVAHN 138
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 336 SLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILD 395
S S S L+ L L+ + + L L +I+ N ++ P F L SL+ L
Sbjct: 46 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 105
Query: 396 ISDNNISG--SLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449
+ ++ S P +++K+++++ N +H F N ++LV +DLSYN +
Sbjct: 106 AVETKLASLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 160
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 22 LKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81
L++L LS I D+ L HL L + N ++ P + +TSL L +L
Sbjct: 53 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL- 111
Query: 82 GSISSSPLVHLTSIEELMLSNN 103
S+ S P+ L ++++L +++N
Sbjct: 112 ASLESFPIGQLITLKKLNVAHN 133
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 8 NTSFLQIIGESMPS-LKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCL-- 64
+T F+ ++ PS +L+ + + + + +G +L LQ L + N L+ L
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399
Query: 65 ANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNN 103
NM+SL LDVS N L SI L LS+N
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 67/167 (40%), Gaps = 6/167 (3%)
Query: 244 PSLYVF-NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVXXXXXXXXX 302
PS + F N + N S+ +K LQ L L N L L +
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411
Query: 303 XXXX-GHMFSRNFNLA-NLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRW 360
H + R A ++ +L L N G + + L + LH NN +S IP+
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH-NNRIMS--IPKD 468
Query: 361 LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPA 407
+ +L LQ + + +N L+ + F +L SLQ + + DN + P
Sbjct: 469 VTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 391 LQILDISDNNI--SGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 448
LQ LD+S N++ + P+C P + ++LS L Q+ +G + L LDLSYNR
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP---AKLSVLDLSYNR 285
Query: 449 LN 450
L+
Sbjct: 286 LD 287
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 316 LANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS--------GRIPRWLGNLTWL 367
L NL +L L N L LE L L +N+L+ G +L L+ L
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538
Query: 368 QYIIMPNNHLEGLIPVE-FCQLDSLQILDISDNNISGSLPACF--HPLSIKQVHLSKNML 424
+ + +N + IPVE F L L+I+D+ NN++ +LPA + +S+K ++L KN++
Sbjct: 539 HILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLI 596
Query: 425 HGQLKRGTFFNCSSLVTLDLSYN 447
K+ +L LD+ +N
Sbjct: 597 TSVEKKVFGPAFRNLTELDMRFN 619
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 106/269 (39%), Gaps = 33/269 (12%)
Query: 22 LKYLSLSDSNSS--RILDRGLCSLVH--LQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
LKYLSLS+S +S + + SL H L L + N + + + L +LD+
Sbjct: 355 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414
Query: 78 NQLTGSISSSPLVHLTSIEELMLSNNHF----QIPISLEPFFNHSRLKFFYAENNQINAE 133
N++ ++ L +I E+ LS N + + +L P L+ +N
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN------ 468
Query: 134 ITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLEN 193
+ S S P L+ L LS+ + L LE +DL H N W N
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANIN-DDMLEGLEKLEILDLQH---NNLARLWKHAN 524
Query: 194 NTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSM 253
GP + L +L++ +N F IPVE+ L L + + +
Sbjct: 525 P-------------GGPIYF-LKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGL 569
Query: 254 NALDGSIPSSFGNMKFLQILDLSNNHLTG 282
N L+ S F N L+ L+L N +T
Sbjct: 570 NNLNTLPASVFNNQVSLKSLNLQKNLITS 598
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 384 EFCQ-LDSLQILDISDNNISGSLPACFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVT 441
E CQ L L++L++ N +S F + + ++HL N + ++K F +L+T
Sbjct: 67 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLIT 125
Query: 442 LDLSYNRLNGS 452
LDLS+N L+ +
Sbjct: 126 LDLSHNGLSST 136
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 316 LANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS--------GRIPRWLGNLTWL 367
L NL +L L N L LE L L +N+L+ G +L L+ L
Sbjct: 489 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 548
Query: 368 QYIIMPNNHLEGLIPVE-FCQLDSLQILDISDNNISGSLPACF--HPLSIKQVHLSKNML 424
+ + +N + IPVE F L L+I+D+ NN++ +LPA + +S+K ++L KN++
Sbjct: 549 HILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLI 606
Query: 425 HGQLKRGTFFNCSSLVTLDLSYN 447
K+ +L LD+ +N
Sbjct: 607 TSVEKKVFGPAFRNLTELDMRFN 629
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 106/269 (39%), Gaps = 33/269 (12%)
Query: 22 LKYLSLSDSNSS--RILDRGLCSLVH--LQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
LKYLSLS+S +S + + SL H L L + N + + + L +LD+
Sbjct: 365 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 424
Query: 78 NQLTGSISSSPLVHLTSIEELMLSNNHF----QIPISLEPFFNHSRLKFFYAENNQINAE 133
N++ ++ L +I E+ LS N + + +L P L+ +N
Sbjct: 425 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN------ 478
Query: 134 ITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLEN 193
+ S S P L+ L LS+ + L LE +DL H N W N
Sbjct: 479 VDSSPSPFQPLRNLTILDLSNNNIANIND-DMLEGLEKLEILDLQH---NNLARLWKHAN 534
Query: 194 NTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSM 253
GP + L +L++ +N F IPVE+ L L + + +
Sbjct: 535 P-------------GGPIYF-LKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGL 579
Query: 254 NALDGSIPSSFGNMKFLQILDLSNNHLTG 282
N L+ S F N L+ L+L N +T
Sbjct: 580 NNLNTLPASVFNNQVSLKSLNLQKNLITS 608
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 384 EFCQ-LDSLQILDISDNNISGSLPACFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVT 441
E CQ L L++L++ N +S F + + ++HL N + ++K F +L+T
Sbjct: 77 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLIT 135
Query: 442 LDLSYNRLNGS 452
LDLS+N L+ +
Sbjct: 136 LDLSHNGLSST 146
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 316 LANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS--------GRIPRWLGNLTWL 367
L NL +L L N L LE L L +N+L+ G +L L+ L
Sbjct: 484 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 543
Query: 368 QYIIMPNNHLEGLIPVE-FCQLDSLQILDISDNNISGSLPACF--HPLSIKQVHLSKNML 424
+ + +N + IPVE F L L+I+D+ NN++ +LPA + +S+K ++L KN++
Sbjct: 544 HILNLESNGFDE-IPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLI 601
Query: 425 HGQLKRGTFFNCSSLVTLDLSYN 447
K+ +L LD+ +N
Sbjct: 602 TSVEKKVFGPAFRNLTELDMRFN 624
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 106/269 (39%), Gaps = 33/269 (12%)
Query: 22 LKYLSLSDSNSS--RILDRGLCSLVH--LQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77
LKYLSLS+S +S + + SL H L L + N + + + L +LD+
Sbjct: 360 LKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 419
Query: 78 NQLTGSISSSPLVHLTSIEELMLSNNHF----QIPISLEPFFNHSRLKFFYAENNQINAE 133
N++ ++ L +I E+ LS N + + +L P L+ +N
Sbjct: 420 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN------ 473
Query: 134 ITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLEN 193
+ S S P L+ L LS+ + L LE +DL H N W N
Sbjct: 474 VDSSPSPFQPLRNLTILDLSNNNIANIN-DDMLEGLEKLEILDLQH---NNLARLWKHAN 529
Query: 194 NTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSM 253
GP + L +L++ +N F IPVE+ L L + + +
Sbjct: 530 P-------------GGPIYF-LKGLSHLHILNLESNGF-DEIPVEVFKDLFELKIIDLGL 574
Query: 254 NALDGSIPSSFGNMKFLQILDLSNNHLTG 282
N L+ S F N L+ L+L N +T
Sbjct: 575 NNLNTLPASVFNNQVSLKSLNLQKNLITS 603
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 384 EFCQ-LDSLQILDISDNNISGSLPACFHPLS-IKQVHLSKNMLHGQLKRGTFFNCSSLVT 441
E CQ L L++L++ N +S F + + ++HL N + ++K F +L+T
Sbjct: 72 ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLIT 130
Query: 442 LDLSYNRLNGS 452
LDLS+N L+ +
Sbjct: 131 LDLSHNGLSST 141
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 10 SFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTS 69
+ L+ + L+ L+L+ + ++I D L HL+EL +D N L+ +TS
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTS 348
Query: 70 LRILDVSSN 78
L+ + + +N
Sbjct: 349 LQKIWLHTN 357
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 3/139 (2%)
Query: 315 NLANLKLLQLEGNRFVGEI-PQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMP 373
LA L+ L L N + + P + L LHL+ L P L LQY+ +
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137
Query: 374 NNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGT 432
+N L+ L F L +L L + N IS F L S+ ++ L +N + +
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHA 196
Query: 433 FFNCSSLVTLDLSYNRLNG 451
F + L+TL L N L+
Sbjct: 197 FRDLGRLMTLYLFANNLSA 215
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374
+L NL L L GNR ++ SL+ L L+ N ++ P +L L + +
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 375 NHLEGLIPVEFCQLDSLQILDISDN 399
N+L L L +LQ L ++DN
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDN 235
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 3/139 (2%)
Query: 315 NLANLKLLQLEGNRFVGEI-PQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMP 373
LA L+ L L N + + P + L LHL+ L P L LQY+ +
Sbjct: 77 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 136
Query: 374 NNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKRGT 432
+N L+ L F L +L L + N IS F L S+ ++ L +N + +
Sbjct: 137 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHA 195
Query: 433 FFNCSSLVTLDLSYNRLNG 451
F + L+TL L N L+
Sbjct: 196 FRDLGRLMTLYLFANNLSA 214
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%)
Query: 315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374
+L NL L L GNR ++ SL+ L L+ N ++ P +L L + +
Sbjct: 150 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 209
Query: 375 NHLEGLIPVEFCQLDSLQILDISDN 399
N+L L L +LQ L ++DN
Sbjct: 210 NNLSALPTEALAPLRALQYLRLNDN 234
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 17 ESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSL-PWCLANMTSLRILDV 75
E M SLK L L+ ++ ++ S L++LYI N + L CL + +L+ LD+
Sbjct: 297 EGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDL 356
Query: 76 SSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLE 112
S + + S + + L ++ L N + P+ LE
Sbjct: 357 SHSDIEASDCCN--LQLKNLRHLQYLNLSYNEPLGLE 391
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 233 GHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT 281
+P I LY+++N + L+ P F + L LDL NN LT
Sbjct: 30 ASVPTGIPTTTQVLYLYDNQITKLE---PGVFDRLTQLTRLDLDNNQLT 75
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374
+L LK L + N+ + +I L+ S L L LNNN L +G LT L + +
Sbjct: 263 DLTKLKXLNVGSNQ-ISDI-SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQ 320
Query: 375 NHLEGLIPV 383
NH+ + P+
Sbjct: 321 NHITDIRPL 329
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 233 GHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT 281
+P I LY+++N + L+ P F + L LDL NN LT
Sbjct: 22 ASVPTGIPTTTQVLYLYDNQITKLE---PGVFDRLTQLTRLDLDNNQLT 67
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 43 LVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 102
L HL+ L + N +R + +L L++ N+LT +I + V+L+ ++EL L N
Sbjct: 87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRN 145
Query: 103 NHFQIPISLEPFFNHSRL 120
N PI P + +R+
Sbjct: 146 N----PIESIPSYAFNRI 159
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 333 IPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQ 392
IP L++ +++ L L+NN ++ L LQ +++ +N + + F L SL+
Sbjct: 20 IPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 77
Query: 393 ILDISDNNISGSLPACFHPLS 413
LD+S N +S + F PLS
Sbjct: 78 HLDLSYNYLSNLSSSWFKPLS 98
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 333 IPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQ 392
IP L++ +++ L L+NN ++ L LQ +++ +N + + F L SL+
Sbjct: 46 IPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 393 ILDISDNNISGSLPACFHPLS 413
LD+S N +S + F PLS
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLS 124
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 26/132 (19%)
Query: 322 LQLEGNRFVGEIPQSLSKC-SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGL 380
L L+ +RF +I + +C + L+ L L L G +P + L L+ +++ NH + L
Sbjct: 256 LNLQEHRF-SDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQL 313
Query: 381 IPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 440
+ SL L I N +K++HL G +L
Sbjct: 314 CQISAANFPSLTHLYIRGN--------------VKKLHLG---------VGCLEKLGNLQ 350
Query: 441 TLDLSYNRLNGS 452
TLDLS+N + S
Sbjct: 351 TLDLSHNDIEAS 362
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,025,598
Number of Sequences: 62578
Number of extensions: 527125
Number of successful extensions: 1707
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 1020
Number of HSP's gapped (non-prelim): 436
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)