Query 048657
Match_columns 456
No_of_seqs 183 out of 2858
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 11:44:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048657.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048657hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.2E-45 1.1E-49 381.2 29.5 441 3-455 148-589 (968)
2 PLN00113 leucine-rich repeat r 100.0 3.2E-44 7E-49 375.3 29.7 440 3-455 77-541 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.9E-36 6.3E-41 271.2 7.1 373 23-454 55-433 (873)
4 KOG4194 Membrane glycoprotein 100.0 6.6E-36 1.4E-40 268.9 6.1 364 22-397 80-447 (873)
5 KOG0444 Cytoskeletal regulator 100.0 1.5E-31 3.2E-36 243.3 -1.0 367 19-425 6-375 (1255)
6 KOG0472 Leucine-rich repeat pr 100.0 8.9E-32 1.9E-36 232.1 -8.9 413 13-450 62-541 (565)
7 KOG0444 Cytoskeletal regulator 99.9 5.1E-29 1.1E-33 226.8 -3.6 369 41-450 4-375 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 5E-29 1.1E-33 215.2 -7.2 398 10-431 105-545 (565)
9 KOG0618 Serine/threonine phosp 99.9 2.2E-28 4.9E-33 231.8 -6.1 405 13-448 38-487 (1081)
10 PLN03210 Resistant to P. syrin 99.9 1.1E-22 2.3E-27 213.8 25.2 344 35-425 549-906 (1153)
11 KOG0618 Serine/threonine phosp 99.9 8.1E-26 1.8E-30 214.7 -2.2 427 5-447 54-510 (1081)
12 PLN03210 Resistant to P. syrin 99.9 1.4E-21 3E-26 205.4 27.0 338 13-375 552-903 (1153)
13 KOG4237 Extracellular matrix p 99.9 1.3E-24 2.9E-29 187.5 -5.0 407 10-447 60-498 (498)
14 KOG4237 Extracellular matrix p 99.8 1.9E-22 4.1E-27 174.4 -4.9 269 3-280 75-358 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 9.5E-18 2.1E-22 164.5 16.5 241 170-454 222-462 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 2.3E-17 5E-22 161.8 16.1 58 318-380 403-460 (788)
17 cd00116 LRR_RI Leucine-rich re 99.7 5.1E-18 1.1E-22 155.8 1.7 280 150-449 3-319 (319)
18 cd00116 LRR_RI Leucine-rich re 99.7 1.5E-17 3.2E-22 152.7 2.9 259 144-423 22-318 (319)
19 PRK15370 E3 ubiquitin-protein 99.7 5.9E-16 1.3E-20 152.9 13.4 248 170-450 178-428 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 4.1E-16 8.8E-21 154.0 11.9 121 269-402 305-428 (754)
21 KOG0617 Ras suppressor protein 99.5 1.4E-15 2.9E-20 117.2 -2.6 135 15-183 29-163 (264)
22 KOG0617 Ras suppressor protein 99.5 8.1E-16 1.8E-20 118.4 -4.7 153 244-402 33-186 (264)
23 KOG1909 Ran GTPase-activating 99.2 4.8E-13 1E-17 115.0 -2.8 242 162-424 22-310 (382)
24 KOG1909 Ran GTPase-activating 99.2 1.2E-12 2.6E-17 112.7 -0.8 244 141-402 26-311 (382)
25 PF14580 LRR_9: Leucine-rich r 99.2 1E-11 2.2E-16 100.2 3.4 130 19-179 18-149 (175)
26 KOG3207 Beta-tubulin folding c 99.2 5.6E-12 1.2E-16 111.7 1.2 213 192-404 118-341 (505)
27 KOG1259 Nischarin, modulator o 99.1 1.6E-11 3.4E-16 103.7 1.4 135 315-455 282-416 (490)
28 PF14580 LRR_9: Leucine-rich r 99.1 1.2E-10 2.6E-15 94.0 4.4 127 315-445 17-148 (175)
29 KOG4658 Apoptotic ATPase [Sign 99.1 1.3E-10 2.8E-15 117.4 4.7 107 19-128 544-652 (889)
30 KOG3207 Beta-tubulin folding c 99.0 1.1E-10 2.5E-15 103.5 2.5 190 165-354 141-339 (505)
31 KOG0532 Leucine-rich repeat (L 99.0 1.2E-11 2.6E-16 113.1 -3.7 169 272-450 79-247 (722)
32 PF13855 LRR_8: Leucine rich r 99.0 3.3E-10 7.1E-15 75.1 3.8 61 20-80 1-61 (61)
33 COG4886 Leucine-rich repeat (L 99.0 8.5E-10 1.8E-14 104.2 6.9 175 244-426 116-291 (394)
34 KOG4658 Apoptotic ATPase [Sign 98.9 1.1E-09 2.5E-14 110.6 4.8 114 10-126 561-676 (889)
35 KOG4341 F-box protein containi 98.9 5E-11 1.1E-15 105.1 -4.4 155 242-396 292-459 (483)
36 KOG2120 SCF ubiquitin ligase, 98.9 4.5E-11 9.7E-16 100.8 -4.8 160 216-376 207-374 (419)
37 PF13855 LRR_8: Leucine rich r 98.9 2E-09 4.3E-14 71.3 3.8 61 341-401 1-61 (61)
38 COG4886 Leucine-rich repeat (L 98.8 6.8E-09 1.5E-13 98.1 7.7 186 215-410 112-298 (394)
39 PLN03150 hypothetical protein; 98.8 1E-08 2.3E-13 101.4 8.8 107 319-425 420-528 (623)
40 KOG1259 Nischarin, modulator o 98.8 1.3E-09 2.8E-14 92.3 2.0 127 293-425 284-412 (490)
41 PLN03150 hypothetical protein; 98.8 1E-08 2.2E-13 101.5 8.4 108 342-449 419-527 (623)
42 KOG4341 F-box protein containi 98.8 2E-10 4.4E-15 101.4 -3.4 303 21-324 139-459 (483)
43 KOG0532 Leucine-rich repeat (L 98.8 3E-10 6.6E-15 104.2 -3.3 171 222-403 78-248 (722)
44 KOG2120 SCF ubiquitin ligase, 98.7 5.9E-10 1.3E-14 94.2 -3.7 184 170-353 185-375 (419)
45 KOG2982 Uncharacterized conser 98.6 1.6E-08 3.5E-13 85.7 2.1 108 22-130 47-158 (418)
46 KOG2982 Uncharacterized conser 98.5 2.7E-08 5.9E-13 84.3 -0.1 186 13-209 64-263 (418)
47 KOG3665 ZYG-1-like serine/thre 98.4 3.5E-08 7.5E-13 97.5 -0.2 161 20-205 122-285 (699)
48 COG5238 RNA1 Ran GTPase-activa 98.4 3.4E-08 7.3E-13 82.7 -1.6 39 14-53 25-67 (388)
49 KOG0531 Protein phosphatase 1, 98.4 5.8E-08 1.3E-12 91.9 -0.4 224 216-453 92-321 (414)
50 KOG1859 Leucine-rich repeat pr 98.3 1.2E-08 2.7E-13 96.6 -7.1 182 212-402 102-292 (1096)
51 COG5238 RNA1 Ran GTPase-activa 98.3 2.3E-07 5E-12 77.8 0.7 36 161-196 21-56 (388)
52 KOG0531 Protein phosphatase 1, 98.2 1.4E-07 3.1E-12 89.3 -1.7 194 243-450 94-290 (414)
53 KOG1859 Leucine-rich repeat pr 98.2 1.4E-08 3.1E-13 96.1 -8.1 178 236-425 102-292 (1096)
54 PF12799 LRR_4: Leucine Rich r 98.1 4.1E-06 8.9E-11 50.6 3.7 36 45-81 2-37 (44)
55 PF12799 LRR_4: Leucine Rich r 98.0 1E-05 2.2E-10 48.8 3.7 38 20-58 1-38 (44)
56 PF13306 LRR_5: Leucine rich r 98.0 2.2E-05 4.8E-10 61.1 6.7 123 312-440 7-129 (129)
57 PF13306 LRR_5: Leucine rich r 97.9 3.8E-05 8.3E-10 59.8 7.5 123 263-392 7-129 (129)
58 KOG1947 Leucine rich repeat pr 97.9 8.6E-07 1.9E-11 86.4 -2.4 114 192-305 185-307 (482)
59 KOG3665 ZYG-1-like serine/thre 97.9 3.7E-06 7.9E-11 83.4 2.0 135 268-404 122-265 (699)
60 KOG1644 U2-associated snRNP A' 97.9 1.3E-05 2.8E-10 64.6 4.5 105 22-131 21-126 (233)
61 KOG1644 U2-associated snRNP A' 97.9 2E-05 4.2E-10 63.6 5.0 109 20-131 42-153 (233)
62 KOG4579 Leucine-rich repeat (L 97.9 4.7E-07 1E-11 67.8 -3.9 83 317-402 53-136 (177)
63 KOG4579 Leucine-rich repeat (L 97.8 9.8E-07 2.1E-11 66.2 -3.7 90 339-431 51-141 (177)
64 PRK15386 type III secretion pr 97.8 0.00021 4.5E-09 65.6 10.2 54 243-303 51-104 (426)
65 PRK15386 type III secretion pr 97.7 0.00029 6.3E-09 64.7 10.0 32 341-375 156-187 (426)
66 KOG1947 Leucine rich repeat pr 97.5 7.6E-06 1.7E-10 79.8 -2.6 35 19-53 187-223 (482)
67 KOG2123 Uncharacterized conser 97.5 4.2E-06 9.2E-11 70.7 -4.4 57 21-81 20-76 (388)
68 KOG2739 Leucine-rich acidic nu 97.3 5.8E-05 1.2E-09 63.6 -0.3 88 41-131 40-129 (260)
69 KOG2739 Leucine-rich acidic nu 97.2 9.7E-05 2.1E-09 62.3 0.1 104 19-125 42-150 (260)
70 KOG2123 Uncharacterized conser 96.8 5.7E-05 1.2E-09 64.1 -4.4 57 342-402 20-76 (388)
71 PF13504 LRR_7: Leucine rich r 95.5 0.0075 1.6E-07 27.8 1.0 17 437-454 1-17 (17)
72 PF00560 LRR_1: Leucine Rich R 95.5 0.0048 1.1E-07 30.7 0.4 18 438-456 1-18 (22)
73 KOG3864 Uncharacterized conser 94.8 0.0085 1.8E-07 48.8 0.2 83 21-104 102-187 (221)
74 PF00560 LRR_1: Leucine Rich R 94.7 0.018 3.8E-07 28.7 1.1 12 70-81 2-13 (22)
75 KOG3864 Uncharacterized conser 94.0 0.0069 1.5E-07 49.3 -2.0 84 341-424 101-188 (221)
76 KOG4308 LRR-containing protein 92.5 0.00092 2E-08 63.8 -10.6 85 340-424 203-302 (478)
77 PF13516 LRR_6: Leucine Rich r 91.9 0.085 1.8E-06 26.8 1.0 18 44-61 2-19 (24)
78 smart00369 LRR_TYP Leucine-ric 91.5 0.16 3.5E-06 26.3 1.9 21 20-40 2-22 (26)
79 smart00370 LRR Leucine-rich re 91.5 0.16 3.5E-06 26.3 1.9 21 20-40 2-22 (26)
80 KOG4308 LRR-containing protein 88.9 0.0032 6.9E-08 60.2 -10.6 185 216-400 112-329 (478)
81 smart00369 LRR_TYP Leucine-ric 88.6 0.43 9.3E-06 24.7 2.0 14 366-379 3-16 (26)
82 smart00370 LRR Leucine-rich re 88.6 0.43 9.3E-06 24.7 2.0 14 366-379 3-16 (26)
83 KOG0473 Leucine-rich repeat pr 87.9 0.021 4.6E-07 47.6 -4.9 86 14-104 37-122 (326)
84 smart00364 LRR_BAC Leucine-ric 86.9 0.44 9.5E-06 24.7 1.3 18 437-455 2-19 (26)
85 smart00367 LRR_CC Leucine-rich 82.3 0.59 1.3E-05 24.2 0.6 13 19-31 1-13 (26)
86 KOG0473 Leucine-rich repeat pr 81.0 0.033 7.1E-07 46.6 -6.7 83 292-377 41-123 (326)
87 smart00365 LRR_SD22 Leucine-ri 79.7 1.6 3.4E-05 22.7 1.6 14 68-81 2-15 (26)
88 smart00368 LRR_RI Leucine rich 75.1 1.3 2.8E-05 23.5 0.5 14 21-34 3-16 (28)
89 KOG3763 mRNA export factor TAP 61.8 4 8.8E-05 39.2 1.2 82 362-443 215-307 (585)
90 KOG3763 mRNA export factor TAP 57.4 5.3 0.00011 38.5 1.2 64 315-378 216-283 (585)
91 KOG1665 AFH1-interacting prote 33.9 55 0.0012 27.6 3.4 12 366-377 217-228 (302)
92 PRK09718 hypothetical protein; 28.8 99 0.0021 29.8 4.6 30 392-424 211-240 (512)
93 KOG4242 Predicted myosin-I-bin 28.0 85 0.0018 30.1 4.0 14 413-426 355-368 (553)
94 PF05725 FNIP: FNIP Repeat; I 26.9 97 0.0021 18.3 2.9 7 390-396 13-19 (44)
95 KOG1665 AFH1-interacting prote 22.0 1.1E+02 0.0025 25.8 3.3 13 365-377 196-208 (302)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.2e-45 Score=381.21 Aligned_cols=441 Identities=31% Similarity=0.479 Sum_probs=309.1
Q ss_pred ccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcccc
Q 048657 3 TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTG 82 (456)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 82 (456)
++|.+.+.+|..+.. +++|++|++++|.+....+..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+++
T Consensus 148 s~n~~~~~~p~~~~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 148 SNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred cCCcccccCChHHhc-CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 345555556666655 6666666666665443333455666666666666666655556666666666666666666654
Q ss_pred ccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCc
Q 048657 83 SISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTF 162 (456)
Q Consensus 83 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 162 (456)
.++. .+.++++|++|++++|.+.+ ..+..+..+++|+.|++++|.+....+.. +....+|+.|++..+ .....+
T Consensus 227 ~~p~-~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~Ls~n-~l~~~~ 300 (968)
T PLN00113 227 EIPY-EIGGLTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPS---IFSLQKLISLDLSDN-SLSGEI 300 (968)
T ss_pred cCCh-hHhcCCCCCEEECcCceecc-ccChhHhCCCCCCEEECcCCeeeccCchh---HhhccCcCEEECcCC-eeccCC
Confidence 4444 55566666666666665542 23344555666666666666554322211 123346666666433 233345
Q ss_pred hHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhcc
Q 048657 163 PKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDV 242 (456)
Q Consensus 163 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 242 (456)
+..+..+++|+.|++++|.+.+..+.. +..+++|+.|++.+|.+....+..++.+++|+.|++++|.+.+..|..+..
T Consensus 301 p~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~- 378 (968)
T PLN00113 301 PELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS- 378 (968)
T ss_pred ChhHcCCCCCcEEECCCCccCCcCChh-HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhC-
Confidence 556666667777777766665555544 355667777777777666666666666777777777777766555555443
Q ss_pred CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657 243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL 322 (456)
Q Consensus 243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 322 (456)
+++++.+++..|.+.+.+|..+..+++|+.|++++|.+.+..+..+ ..+++|+.+++++|.+.+..+..+..+++|+.|
T Consensus 379 ~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 457 (968)
T PLN00113 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDISNNNLQGRINSRKWDMPSLQML 457 (968)
T ss_pred cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH-hcCCCCCEEECcCCcccCccChhhccCCCCcEE
Confidence 5677777777777777777777778888888888887775555543 367788888888888777666666678888888
Q ss_pred EccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657 323 QLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 323 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 402 (456)
++++|.+.+..|..+ ..++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++
T Consensus 458 ~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 536 (968)
T PLN00113 458 SLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLS 536 (968)
T ss_pred ECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCccc
Confidence 888888876666544 4578999999999998888888999999999999999999888999999999999999999999
Q ss_pred CCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCCC
Q 048657 403 GSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455 (456)
Q Consensus 403 ~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~ 455 (456)
+..+..+. +++|+.|++++|++.+.+|.. +..+++|+.|++++|++.+.+|+
T Consensus 537 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 537 GQIPASFSEMPVLSQLDLSQNQLSGEIPKN-LGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred ccCChhHhCcccCCEEECCCCcccccCChh-HhcCcccCEEeccCCcceeeCCC
Confidence 88887765 689999999999998888877 78899999999999999999985
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.2e-44 Score=375.29 Aligned_cols=440 Identities=31% Similarity=0.431 Sum_probs=239.8
Q ss_pred ccccccchhhhHHhhcCCCccEEeccCCCCC-CcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657 3 TRIALNTSFLQIIGESMPSLKYLSLSDSNSS-RILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81 (456)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 81 (456)
++|.+++.++..++. +++|++|+|++|.+. .++.+.+..+++|++|++++|.+.+..|. ..+++|++|++++|.++
T Consensus 77 ~~~~i~~~~~~~~~~-l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~ 153 (968)
T PLN00113 77 SGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLS 153 (968)
T ss_pred cCCCccccCChHHhC-CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCccc
Confidence 456667777777777 777777777777754 45544445667777777776666544333 23455666666666555
Q ss_pred cccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCC
Q 048657 82 GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVT 161 (456)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 161 (456)
+.++. .+.++++|++|++++|.+.. ..+..+..+++|+.|++++|.+....... +....+|+.+++..+. ....
T Consensus 154 ~~~p~-~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~n~l~~~~p~~---l~~l~~L~~L~L~~n~-l~~~ 227 (968)
T PLN00113 154 GEIPN-DIGSFSSLKVLDLGGNVLVG-KIPNSLTNLTSLEFLTLASNQLVGQIPRE---LGQMKSLKWIYLGYNN-LSGE 227 (968)
T ss_pred ccCCh-HHhcCCCCCEEECccCcccc-cCChhhhhCcCCCeeeccCCCCcCcCChH---HcCcCCccEEECcCCc-cCCc
Confidence 44443 45555666666666555442 22334455555555555555543322211 1223345555553222 2223
Q ss_pred chHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhc
Q 048657 162 FPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGD 241 (456)
Q Consensus 162 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 241 (456)
++..+..+++|+.|++++|.+.+..+.. +..+++|+.|.+.+|.+....+..+..+++|++|++++|.+.+.+|..+..
T Consensus 228 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 306 (968)
T PLN00113 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ 306 (968)
T ss_pred CChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC
Confidence 4444455555555555555444443333 234445555555555444444444444445555555544444333333322
Q ss_pred -----------------------cCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEE
Q 048657 242 -----------------------VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESL 298 (456)
Q Consensus 242 -----------------------~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 298 (456)
.+++|+.++++.|.+.+.+|..+..+++|+.|++++|.+.+.++..+. .+++|+.+
T Consensus 307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-~~~~L~~L 385 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLFKL 385 (968)
T ss_pred CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh-CcCCCCEE
Confidence 144444444444444444444444444455555544444433333322 34445555
Q ss_pred EccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCccc
Q 048657 299 ALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLE 378 (456)
Q Consensus 299 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 378 (456)
++.+|.+.+..+..+..+++|+.|++++|.+++..|..+..++.|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~ 465 (968)
T PLN00113 386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465 (968)
T ss_pred ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceee
Confidence 55555554444444555556666666666655555555556666666666666665555555555666666666666665
Q ss_pred ccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCCC
Q 048657 379 GLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455 (456)
Q Consensus 379 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~ 455 (456)
+..|..+ ..++|+.|++++|++++..+..+. .++|++|++++|.+.+.+|.. +.++++|+.|++++|.+++.+|+
T Consensus 466 ~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~ 541 (968)
T PLN00113 466 GGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE-LSSCKKLVSLDLSHNQLSGQIPA 541 (968)
T ss_pred eecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChH-HcCccCCCEEECCCCcccccCCh
Confidence 5444433 335666666666666655554443 557777777777777666665 67778888888888888877774
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-36 Score=271.23 Aligned_cols=373 Identities=23% Similarity=0.241 Sum_probs=265.0
Q ss_pred cEEeccCCCCCCcccccccCC--CCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEc
Q 048657 23 KYLSLSDSNSSRILDRGLCSL--VHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 100 (456)
Q Consensus 23 ~~L~L~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l 100 (456)
+.|+.++..+..+.-..+..+ +.-+.|++++|++.+..+..|.++++|+.+++.+|.++ .||. ......+|+.|++
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-f~~~sghl~~L~L 132 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR-FGHESGHLEKLDL 132 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc-ccccccceeEEee
Confidence 445555555544433333322 33455777777777667777777777777777777777 6665 3333445777777
Q ss_pred CCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCc
Q 048657 101 SNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHI 180 (456)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 180 (456)
.+|.|. .+..+.+..++.|+.++++.|.+.
T Consensus 133 ~~N~I~-sv~se~L~~l~alrslDLSrN~is------------------------------------------------- 162 (873)
T KOG4194|consen 133 RHNLIS-SVTSEELSALPALRSLDLSRNLIS------------------------------------------------- 162 (873)
T ss_pred eccccc-cccHHHHHhHhhhhhhhhhhchhh-------------------------------------------------
Confidence 777665 334444555555555555555443
Q ss_pred ccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCc
Q 048657 181 KMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSI 260 (456)
Q Consensus 181 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 260 (456)
+++.-.+..-.++++|++..|.++..-...|.++.+|..|.+++|.++ .+|...+..+++|+.|++..|.+...-
T Consensus 163 ----~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 163 ----EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred ----cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeeh
Confidence 222222223334555555555555544555666667777788888777 677777777788888888877765333
Q ss_pred cccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCC
Q 048657 261 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKC 340 (456)
Q Consensus 261 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 340 (456)
.-.|.++++|+.|.+..|++. .+....+..+.++++|++..|++......++.++.+|+.|+++.|.+....+..+..+
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 456778888888888888887 6666666678889999999988888888888888889999999998887777788888
Q ss_pred CCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCccc----ccccccE
Q 048657 341 SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF----HPLSIKQ 416 (456)
Q Consensus 341 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~----~~~~L~~ 416 (456)
++|++|++++|++++.-++.|..+..|++|+|+.|.+.......|..+++|++|+|+.|.+...+.... .+++|..
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 899999999998887777788888889999999998887777788888899999999888764443322 1678889
Q ss_pred EEccCcccCCCCCcccccCCCcceEEEccCcccCCCCC
Q 048657 417 VHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 454 (456)
Q Consensus 417 l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p 454 (456)
|++.||++ +.++..+|.++++|++|||.+|.|-+..|
T Consensus 397 L~l~gNql-k~I~krAfsgl~~LE~LdL~~NaiaSIq~ 433 (873)
T KOG4194|consen 397 LRLTGNQL-KSIPKRAFSGLEALEHLDLGDNAIASIQP 433 (873)
T ss_pred eeecCcee-eecchhhhccCcccceecCCCCcceeecc
Confidence 99999988 68888888889999999999988875544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-36 Score=268.94 Aligned_cols=364 Identities=23% Similarity=0.248 Sum_probs=230.8
Q ss_pred ccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcC
Q 048657 22 LKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLS 101 (456)
Q Consensus 22 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~ 101 (456)
.+.|++++|.+.++....|.++++|+++++.+|.++ ..|.......+|+.|++.+|.|+ .+....+..++.|+.|+++
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhh
Confidence 444566655555555555556666666666555555 44444444455556666655555 3433345555555666666
Q ss_pred CceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCch-HHhhcCCCccEEEecCc
Q 048657 102 NNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFP-KFLYHQHDLEYVDLSHI 180 (456)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 180 (456)
.|.++ .+....+..-.++++|++++|++++.....+..+. +|-.+.+..+. ...+| ..++.+++|+.|++..|
T Consensus 158 rN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~ln---sL~tlkLsrNr--ittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 158 RNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLN---SLLTLKLSRNR--ITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hchhh-cccCCCCCCCCCceEEeeccccccccccccccccc---hheeeecccCc--ccccCHHHhhhcchhhhhhcccc
Confidence 55554 33334444445555666655555443322222111 22222221111 11233 34455788888888887
Q ss_pred ccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCc
Q 048657 181 KMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSI 260 (456)
Q Consensus 181 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 260 (456)
.+. ...-..+.++++|+.+.+..|.+...-...|..+.++++|++..|++. .+.....-+++.|+.|+++.|.+...-
T Consensus 232 ~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih 309 (873)
T KOG4194|consen 232 RIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIH 309 (873)
T ss_pred cee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheee
Confidence 763 222223577788888888888777766677777788888888887776 333333334778888888888777666
Q ss_pred cccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccc---cccccc
Q 048657 261 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVG---EIPQSL 337 (456)
Q Consensus 261 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~ 337 (456)
+++++.+++|++|+++.|.++ .++...+..+..|++|++++|++.......|..+++|++|++..|.+.. +....|
T Consensus 310 ~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 310 IDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF 388 (873)
T ss_pred cchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence 777777888888888888877 7776666677778888888888777777777777888888888877643 234456
Q ss_pred cCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCc
Q 048657 338 SKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDIS 397 (456)
Q Consensus 338 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 397 (456)
..+++|+.|.+.+|++..+.-.+|.++.+|++|+|.+|.+-.+.+.+|..+ .|++|.+.
T Consensus 389 ~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred ccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 677888888888887775556677788888888888888777777777777 77776553
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.5e-31 Score=243.28 Aligned_cols=367 Identities=25% Similarity=0.337 Sum_probs=308.6
Q ss_pred CCCccEEeccCCCCC-CcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccE
Q 048657 19 MPSLKYLSLSDSNSS-RILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE 97 (456)
Q Consensus 19 ~~~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~ 97 (456)
+|.+|-+|+++|.+. .-.+.....+..++.|.|...++. ..|+.++.+.+|++|.+++|+++ .+-. .+..++.|+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhG-ELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHG-ELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhh-hhccchhhHH
Confidence 678899999999954 444467888999999999999998 88999999999999999999988 3433 5888999999
Q ss_pred EEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEe
Q 048657 98 LMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDL 177 (456)
Q Consensus 98 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l 177 (456)
+.+++|.+.....+..+.++..|+.+++++|++. ..|..+....++-.|++
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-----------------------------EvP~~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-----------------------------EVPTNLEYAKNSIVLNL 133 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-----------------------------hcchhhhhhcCcEEEEc
Confidence 9999999987777888999999999999999886 56777788889999999
Q ss_pred cCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccC
Q 048657 178 SHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALD 257 (456)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 257 (456)
++|++. .+|..++.++..|-.|++++|.+.. ++..+..+..|++|++++|.+. .+.......+++|+.|.+++.+-+
T Consensus 134 S~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 134 SYNNIE-TIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred ccCccc-cCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccch
Confidence 999885 7888888899999999999988664 5556788889999999998765 332222223667888888876543
Q ss_pred -CCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcccccccccc
Q 048657 258 -GSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQS 336 (456)
Q Consensus 258 -~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 336 (456)
..+|.++..+.+|..++++.|++. ..|..++ .+++|+.|++++|.+++.. ...+...+|++|++++|+++ .+|.+
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt-~LP~a 286 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLT-VLPDA 286 (1255)
T ss_pred hhcCCCchhhhhhhhhccccccCCC-cchHHHh-hhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhc-cchHH
Confidence 468889999999999999999987 7777765 7899999999999998644 33456789999999999998 89999
Q ss_pred ccCCCCCcEEEcCCCcCc-cccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCccccccccc
Q 048657 337 LSKCSSLEGLHLNNNSLS-GRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIK 415 (456)
Q Consensus 337 ~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~ 415 (456)
++.++.|+.|.+.+|+++ +-+|..++.+..|+.+...+|.+. ..|..++.|++|++|.++.|++...+..+...+-|+
T Consensus 287 vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~ 365 (1255)
T KOG0444|consen 287 VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLK 365 (1255)
T ss_pred HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcc
Confidence 999999999999999876 458899999999999999999886 778999999999999999999875555444578999
Q ss_pred EEEccCcccC
Q 048657 416 QVHLSKNMLH 425 (456)
Q Consensus 416 ~l~l~~~~~~ 425 (456)
.||++.|.-.
T Consensus 366 vLDlreNpnL 375 (1255)
T KOG0444|consen 366 VLDLRENPNL 375 (1255)
T ss_pred eeeccCCcCc
Confidence 9999988764
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=8.9e-32 Score=232.06 Aligned_cols=413 Identities=25% Similarity=0.302 Sum_probs=303.0
Q ss_pred hHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCC
Q 048657 13 QIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHL 92 (456)
Q Consensus 13 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l 92 (456)
+++.. +..|.+|++.+|....+++ ++..+..++.++.+.++++ .+|+.+..+.+|+.++.++|.+. .+++ .+..+
T Consensus 62 ~dl~n-L~~l~vl~~~~n~l~~lp~-aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~-~i~~~ 136 (565)
T KOG0472|consen 62 EDLKN-LACLTVLNVHDNKLSQLPA-AIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPD-SIGRL 136 (565)
T ss_pred Hhhhc-ccceeEEEeccchhhhCCH-HHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCc-hHHHH
Confidence 45666 8889999999999888885 7888889999999999988 88999999999999999999888 7776 78888
Q ss_pred CCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCc
Q 048657 93 TSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDL 172 (456)
Q Consensus 93 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L 172 (456)
-.|+.++..+|++. ..+..+..+.++..+++.+|.+....+.. ..+..+++++. +...-..+|..++.+..|
T Consensus 137 ~~l~dl~~~~N~i~--slp~~~~~~~~l~~l~~~~n~l~~l~~~~----i~m~~L~~ld~--~~N~L~tlP~~lg~l~~L 208 (565)
T KOG0472|consen 137 LDLEDLDATNNQIS--SLPEDMVNLSKLSKLDLEGNKLKALPENH----IAMKRLKHLDC--NSNLLETLPPELGGLESL 208 (565)
T ss_pred hhhhhhhccccccc--cCchHHHHHHHHHHhhccccchhhCCHHH----HHHHHHHhccc--chhhhhcCChhhcchhhh
Confidence 88999999888876 45567778888888888888775332221 22334454443 344556788888888888
Q ss_pred cEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEcc
Q 048657 173 EYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNS 252 (456)
Q Consensus 173 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~ 252 (456)
+.|++.+|.+. ..|+ +.+|..|.++.+..+++..........++++..||+..|++. .+|..+-- +.+|.+++++
T Consensus 209 ~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlS 283 (565)
T KOG0472|consen 209 ELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL-LRSLERLDLS 283 (565)
T ss_pred HHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHH-hhhhhhhccc
Confidence 88898888875 5553 478888888888888776655555667888888888888887 66665543 6788888888
Q ss_pred CCccCCCccccccCCCCCcEEeccCCcCCCcccchhh-----------------------------------------cC
Q 048657 253 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA-----------------------------------------VG 291 (456)
Q Consensus 253 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~-----------------------------------------~~ 291 (456)
+|.++ .+|..++++ .|+.|.+.+|.+. .+...+. ..
T Consensus 284 NN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~ 360 (565)
T KOG0472|consen 284 NNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYA 360 (565)
T ss_pred CCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhh
Confidence 88877 567778887 7888887777543 1111110 01
Q ss_pred CCcccEEEccCCcccccccccccc--cccccEEEccCcccc-----------------------ccccccccCCCCCcEE
Q 048657 292 CVNLESLALSNNNLEGHMFSRNFN--LANLKLLQLEGNRFV-----------------------GEIPQSLSKCSSLEGL 346 (456)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~-----------------------~~~~~~~~~l~~L~~L 346 (456)
..+.+.|++++-+++..+...|.. -.-...+++++|++. +-.+..++++++|..|
T Consensus 361 ~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L 440 (565)
T KOG0472|consen 361 IITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFL 440 (565)
T ss_pred hhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceee
Confidence 123455555555555433322211 111344555555432 1344556677889999
Q ss_pred EcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCccc-ccccccEEEccCcccC
Q 048657 347 HLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF-HPLSIKQVHLSKNMLH 425 (456)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~l~l~~~~~~ 425 (456)
++++|-+. .+|..++.+..|+.|+++.|.|. ..|.++...-.++.+-.++|++....+..+ .++.|+.||+.+|.+.
T Consensus 441 ~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq 518 (565)
T KOG0472|consen 441 DLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ 518 (565)
T ss_pred ecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh
Confidence 99988776 78888888888999999999887 456776666678888888888887777633 4789999999999996
Q ss_pred CCCCcccccCCCcceEEEccCcccC
Q 048657 426 GQLKRGTFFNCSSLVTLDLSYNRLN 450 (456)
Q Consensus 426 ~~~~~~~~~~~~~L~~L~l~~~~l~ 450 (456)
.+|+. +++|.+|++|++++|++.
T Consensus 519 -~IPp~-LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 519 -QIPPI-LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred -hCChh-hccccceeEEEecCCccC
Confidence 78888 999999999999999987
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=5.1e-29 Score=226.85 Aligned_cols=369 Identities=25% Similarity=0.335 Sum_probs=296.3
Q ss_pred cCCCCCcEEEcccCccc-ccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCCCccccccc
Q 048657 41 CSLVHLQELYIDNNDLR-GSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSR 119 (456)
Q Consensus 41 ~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 119 (456)
+-++-.+-+++++|.++ +.+|..+..++.++.|.+..+++. .+|+ .+..+.+|++|.+++|++. ...+.+..++.
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPe-EL~~lqkLEHLs~~HN~L~--~vhGELs~Lp~ 79 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPE-ELSRLQKLEHLSMAHNQLI--SVHGELSDLPR 79 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChH-HHHHHhhhhhhhhhhhhhH--hhhhhhccchh
Confidence 44667788999999997 678999999999999999999998 8887 8999999999999999876 44467778899
Q ss_pred ceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhhcccccee
Q 048657 120 LKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQ 199 (456)
Q Consensus 120 L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 199 (456)
||.+.++.|.+.. ..+|..+..+..|..||+++|.+. +.|..+ ..-.++..
T Consensus 80 LRsv~~R~N~LKn---------------------------sGiP~diF~l~dLt~lDLShNqL~-EvP~~L-E~AKn~iV 130 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKN---------------------------SGIPTDIFRLKDLTILDLSHNQLR-EVPTNL-EYAKNSIV 130 (1255)
T ss_pred hHHHhhhcccccc---------------------------CCCCchhcccccceeeecchhhhh-hcchhh-hhhcCcEE
Confidence 9999888877642 256778888999999999999886 556543 56677888
Q ss_pred eeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCc
Q 048657 200 LSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH 279 (456)
Q Consensus 200 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 279 (456)
|++++|.+..+....+.++..|-.|++++|.+. .+|...-. +..|+.|.+++|++.-.-...+..+++|+.|.+++++
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR-L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~Tq 208 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR-LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQ 208 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHH-HhhhhhhhcCCChhhHHHHhcCccchhhhhhhccccc
Confidence 999999888777777788888889999999886 66666554 7788999999988764444455567777788888774
Q ss_pred CC-CcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccC
Q 048657 280 LT-GEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIP 358 (456)
Q Consensus 280 l~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 358 (456)
-+ ..+|..+- .+.+|..++++.|.+.. .+..+..+++|+.|++++|.++ .+........+|++|+++.|+++ .+|
T Consensus 209 RTl~N~Ptsld-~l~NL~dvDlS~N~Lp~-vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP 284 (1255)
T KOG0444|consen 209 RTLDNIPTSLD-DLHNLRDVDLSENNLPI-VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLP 284 (1255)
T ss_pred chhhcCCCchh-hhhhhhhccccccCCCc-chHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cch
Confidence 22 25555543 67888999999998875 4455667889999999999988 66666677788999999999998 889
Q ss_pred ccccCCCCCcEEEcCCCcccc-cCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCC
Q 048657 359 RWLGNLTWLQYIIMPNNHLEG-LIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCS 437 (456)
Q Consensus 359 ~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 437 (456)
.++..+++|+.|.+.+|+++- -+|..++.+..|+.+...+|.+.-.+...-.+..|+.|.|+.|.+. ++|.+ +.-++
T Consensus 285 ~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPea-IHlL~ 362 (1255)
T KOG0444|consen 285 DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEA-IHLLP 362 (1255)
T ss_pred HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhh-hhhcC
Confidence 999999999999999998753 3578888899999999999988755444445889999999999997 67777 78889
Q ss_pred cceEEEccCcccC
Q 048657 438 SLVTLDLSYNRLN 450 (456)
Q Consensus 438 ~L~~L~l~~~~l~ 450 (456)
.|+.||+..|+-.
T Consensus 363 ~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 363 DLKVLDLRENPNL 375 (1255)
T ss_pred CcceeeccCCcCc
Confidence 9999999999755
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=5e-29 Score=215.15 Aligned_cols=398 Identities=22% Similarity=0.313 Sum_probs=257.7
Q ss_pred hhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCC
Q 048657 10 SFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL 89 (456)
Q Consensus 10 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~ 89 (456)
++|+++.. .+.++.++.+.+.+..++ +.++.+-.++.++..+|+++ .+|.++.++.+|..+++.+|.++ .++++.+
T Consensus 105 ~lp~~i~s-~~~l~~l~~s~n~~~el~-~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i 180 (565)
T KOG0472|consen 105 ELPEQIGS-LISLVKLDCSSNELKELP-DSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHI 180 (565)
T ss_pred hccHHHhh-hhhhhhhhccccceeecC-chHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHH
Confidence 45556665 666666666666665555 35666666666666666666 66666666667777777777766 5555333
Q ss_pred cCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHH-hhc
Q 048657 90 VHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKF-LYH 168 (456)
Q Consensus 90 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-l~~ 168 (456)
+++.|++|+...|.+. ..+..++.+.+|..+++..|.+.. ..++..+..++.++++.+...+ +++. .+.
T Consensus 181 -~m~~L~~ld~~~N~L~--tlP~~lg~l~~L~~LyL~~Nki~~-----lPef~gcs~L~Elh~g~N~i~~--lpae~~~~ 250 (565)
T KOG0472|consen 181 -AMKRLKHLDCNSNLLE--TLPPELGGLESLELLYLRRNKIRF-----LPEFPGCSLLKELHVGENQIEM--LPAEHLKH 250 (565)
T ss_pred -HHHHHHhcccchhhhh--cCChhhcchhhhHHHHhhhccccc-----CCCCCccHHHHHHHhcccHHHh--hHHHHhcc
Confidence 3677777776666654 444566777777777777776642 2244556666666664443322 2333 336
Q ss_pred CCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhc-----cC
Q 048657 169 QHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGD-----VL 243 (456)
Q Consensus 169 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~ 243 (456)
++.+..||+..|++. +.|+.. .-+.+|++|+++++.+++ .+..++++ .|+.|.+.||.+. .+-.++.. .+
T Consensus 251 L~~l~vLDLRdNklk-e~Pde~-clLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vL 325 (565)
T KOG0472|consen 251 LNSLLVLDLRDNKLK-EVPDEI-CLLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVL 325 (565)
T ss_pred cccceeeeccccccc-cCchHH-HHhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHH
Confidence 777888888888776 455443 456677888888877664 44566777 7777777776543 11100000 00
Q ss_pred CcceEE----EccCC---ccC-CCcc----ccccCCCCCcEEeccCCcCCCcccchhhcCCC--cccEEEccCCccc---
Q 048657 244 PSLYVF----NNSMN---ALD-GSIP----SSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV--NLESLALSNNNLE--- 306 (456)
Q Consensus 244 ~~L~~l----~l~~~---~~~-~~~~----~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~--~L~~L~l~~~~~~--- 306 (456)
..|+.- -++.. .-+ +..+ .......+.+.|++++-+++ .+|..++.... -....+++.|++.
T Consensus 326 KyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elP 404 (565)
T KOG0472|consen 326 KYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELP 404 (565)
T ss_pred HHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhh
Confidence 111110 00000 000 0000 01122334455555555555 55554432211 1445555555433
Q ss_pred --------------------ccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCC
Q 048657 307 --------------------GHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTW 366 (456)
Q Consensus 307 --------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 366 (456)
+.++..++.+++|..|++++|.+. .+|..+..+..|+.|+++.|.+. .+|++......
T Consensus 405 k~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~ 482 (565)
T KOG0472|consen 405 KRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQT 482 (565)
T ss_pred hhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHH
Confidence 234455567899999999999987 78999999999999999999887 89999999999
Q ss_pred CcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcc
Q 048657 367 LQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRG 431 (456)
Q Consensus 367 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 431 (456)
++.+-.++|++..+.+..+.++.+|++|++.+|.+..+++....+.+|+.|++.||.+- .|..
T Consensus 483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred HHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC--CCHH
Confidence 99999999999988888899999999999999999988887777999999999999994 5554
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=2.2e-28 Score=231.84 Aligned_cols=405 Identities=26% Similarity=0.260 Sum_probs=257.1
Q ss_pred hHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCC
Q 048657 13 QIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHL 92 (456)
Q Consensus 13 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l 92 (456)
-++.+++.+|+.|+|++|.+.+.|. .+..+++|+.|.++.|.+. ..|.+..++.+|+++.+..|.+. ..|. .+..+
T Consensus 38 l~~~~~~v~L~~l~lsnn~~~~fp~-~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~-~~~~l 113 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSNNQISSFPI-QITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPA-SISEL 113 (1081)
T ss_pred hHHhhheeeeEEeeccccccccCCc-hhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCch-hHHhh
Confidence 4555557779999999998888884 7888999999999999887 77788888899999999999887 6665 78888
Q ss_pred CCccEEEcCCceeeeccCCCcccccccceEEeccCc-------------------ccccccccCcCCCCCccccce-eec
Q 048657 93 TSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENN-------------------QINAEITQSHSLIPPKFQLSR-LSL 152 (456)
Q Consensus 93 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~-------------------~~~~~~~~~~~~~~~~~~L~~-l~l 152 (456)
++|++|+++.|.+. ..+..+..+..+.++..++| .+....... ...+++ +++
T Consensus 114 knl~~LdlS~N~f~--~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~------i~~l~~~ldL 185 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFG--PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLID------IYNLTHQLDL 185 (1081)
T ss_pred hcccccccchhccC--CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcc------hhhhheeeec
Confidence 99999999988876 12223334444444444444 222111111 011222 333
Q ss_pred cCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccC
Q 048657 153 SSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFR 232 (456)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 232 (456)
...... ...+..+++|+.+....+.+... -..-++++.|....|.++.... -....+|+.++++.+++.
T Consensus 186 r~N~~~----~~dls~~~~l~~l~c~rn~ls~l-----~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 186 RYNEME----VLDLSNLANLEVLHCERNQLSEL-----EISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS 254 (1081)
T ss_pred ccchhh----hhhhhhccchhhhhhhhcccceE-----EecCcchheeeeccCcceeecc--ccccccceeeecchhhhh
Confidence 222111 12233444444444444433210 1123445555555555542111 123356677777777766
Q ss_pred CCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccc-
Q 048657 233 GHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFS- 311 (456)
Q Consensus 233 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~- 311 (456)
.+|.++.. +.++..++...|.+. .+|..+...++|+.+.+..|.+. .++... ....+|++|++..|.+......
T Consensus 255 -~lp~wi~~-~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~l-e~~~sL~tLdL~~N~L~~lp~~~ 329 (1081)
T KOG0618|consen 255 -NLPEWIGA-CANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFL-EGLKSLRTLDLQSNNLPSLPDNF 329 (1081)
T ss_pred -cchHHHHh-cccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcc-cccceeeeeeehhccccccchHH
Confidence 56644444 667777777776664 45555555556666666655554 444332 2355566666666555432221
Q ss_pred ------------------------cccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCC
Q 048657 312 ------------------------RNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWL 367 (456)
Q Consensus 312 ------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 367 (456)
.-..++.|+.|.+.+|.+++.....+.+.+.|+.|++++|++.......+.++..|
T Consensus 330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L 409 (1081)
T KOG0618|consen 330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL 409 (1081)
T ss_pred HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHh
Confidence 11135567788888888877666677788888888888888874444567778888
Q ss_pred cEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCc
Q 048657 368 QYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 447 (456)
Q Consensus 368 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 447 (456)
++|+++||+++ .+|..+..++.|++|...+|.+... |.....++|+.+|++.|++.......... -|+|++||+++|
T Consensus 410 eeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~f-Pe~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 410 EELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSF-PELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGN 486 (1081)
T ss_pred HHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeec-hhhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCC
Confidence 88888888887 4467788888888888888888744 46667889999999999885433333222 278999999998
Q ss_pred c
Q 048657 448 R 448 (456)
Q Consensus 448 ~ 448 (456)
.
T Consensus 487 ~ 487 (1081)
T KOG0618|consen 487 T 487 (1081)
T ss_pred c
Confidence 6
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.1e-22 Score=213.76 Aligned_cols=344 Identities=18% Similarity=0.176 Sum_probs=237.2
Q ss_pred cccccccCCCCCcEEEcccCc------ccccchhhhhcCC-CCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeee
Q 048657 35 ILDRGLCSLVHLQELYIDNND------LRGSLPWCLANMT-SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQI 107 (456)
Q Consensus 35 ~~~~~l~~l~~L~~L~l~~~~------~~~~~~~~~~~l~-~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~ 107 (456)
+...+|.++++|+.|.+..+. +...+|..+..++ +|+.|.+.++.++ .+|. .+ ...+|++|+++++++.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLE- 624 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCcccc-
Confidence 444578888889988886543 2234566666664 5888988888877 7776 33 5678888888888765
Q ss_pred ccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccc
Q 048657 108 PISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFP 187 (456)
Q Consensus 108 ~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 187 (456)
..+..+..+++|+.++++++... ..++ .+..+++|+.|++++|.....+|
T Consensus 625 -~L~~~~~~l~~Lk~L~Ls~~~~l----------------------------~~ip-~ls~l~~Le~L~L~~c~~L~~lp 674 (1153)
T PLN03210 625 -KLWDGVHSLTGLRNIDLRGSKNL----------------------------KEIP-DLSMATNLETLKLSDCSSLVELP 674 (1153)
T ss_pred -ccccccccCCCCCEEECCCCCCc----------------------------CcCC-ccccCCcccEEEecCCCCccccc
Confidence 23344566778888888765321 0111 24567899999999987655666
Q ss_pred hhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCC
Q 048657 188 TWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNM 267 (456)
Q Consensus 188 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~ 267 (456)
.. ...+++|+.|++.+|.....++..+ .+++|+.|++++|.....+|. ..++|+.+++..+.+. .+|..+ .+
T Consensus 675 ~s-i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~-~l 746 (1153)
T PLN03210 675 SS-IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNL-RL 746 (1153)
T ss_pred hh-hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccc-cc
Confidence 55 4678899999999887665555544 678899999988864434443 2468888898888765 455444 57
Q ss_pred CCCcEEeccCCcCCC------cccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCC
Q 048657 268 KFLQILDLSNNHLTG------EIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCS 341 (456)
Q Consensus 268 ~~L~~L~l~~~~l~~------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 341 (456)
++|++|.+.++.... ..+......+++|+.|++++|......+..+..+++|+.|++++|.....+|... +++
T Consensus 747 ~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~ 825 (1153)
T PLN03210 747 ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLE 825 (1153)
T ss_pred cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccc
Confidence 788888887643210 1111122235688888888887666667777888889999998876544566554 688
Q ss_pred CCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCc-cCCCCCcccccccccEEEcc
Q 048657 342 SLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNN-ISGSLPACFHPLSIKQVHLS 420 (456)
Q Consensus 342 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~l~l~ 420 (456)
+|+.|++++|......|.. .++|+.|++++|.+. ..|.++..+++|+.|++++|+ +...+......++|+.++++
T Consensus 826 sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~ 901 (1153)
T PLN03210 826 SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFS 901 (1153)
T ss_pred ccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecC
Confidence 8889999888644344432 367888889888887 456778888889999998864 45444433446788888888
Q ss_pred CcccC
Q 048657 421 KNMLH 425 (456)
Q Consensus 421 ~~~~~ 425 (456)
+|.-.
T Consensus 902 ~C~~L 906 (1153)
T PLN03210 902 DCGAL 906 (1153)
T ss_pred CCccc
Confidence 88654
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.90 E-value=8.1e-26 Score=214.65 Aligned_cols=427 Identities=28% Similarity=0.342 Sum_probs=289.8
Q ss_pred ccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcccccc
Q 048657 5 IALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSI 84 (456)
Q Consensus 5 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~ 84 (456)
|...+.+|..+-. +++|+.|+++.|.+...+ ....++.+|+++.|.+|.+. .+|..+..+++|++|++++|.+. .+
T Consensus 54 nn~~~~fp~~it~-l~~L~~ln~s~n~i~~vp-~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~ 129 (1081)
T KOG0618|consen 54 NNQISSFPIQITL-LSHLRQLNLSRNYIRSVP-SSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PI 129 (1081)
T ss_pred ccccccCCchhhh-HHHHhhcccchhhHhhCc-hhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CC
Confidence 3445678888888 999999999999998888 47889999999999999888 89999999999999999999887 77
Q ss_pred CCCCCcCCCCccEEEcCCce-ee--e------------ccCCCcccccccceE-EeccCccccccccc--CcCCCCC--c
Q 048657 85 SSSPLVHLTSIEELMLSNNH-FQ--I------------PISLEPFFNHSRLKF-FYAENNQINAEITQ--SHSLIPP--K 144 (456)
Q Consensus 85 ~~~~~~~l~~L~~L~l~~~~-~~--~------------~~~~~~~~~~~~L~~-l~l~~~~~~~~~~~--~~~~~~~--~ 144 (456)
|. .+..+..++.+..++|. +. + ............+++ +++++|.+...... ..-.... .
T Consensus 130 Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l~~l~c~r 208 (1081)
T KOG0618|consen 130 PL-VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANLEVLHCER 208 (1081)
T ss_pred ch-hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccchhhhhhhh
Confidence 76 56666666666666551 00 0 000011112233444 78887776511100 0000011 1
Q ss_pred cccceeeccCCCCCCC-----CchH--HhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccC
Q 048657 145 FQLSRLSLSSGYEDGV-----TFPK--FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHS 217 (456)
Q Consensus 145 ~~L~~l~l~~~~~~~~-----~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 217 (456)
..+..+.+.+...... .+.. .-....+|+.++++++.+. .+|+| ...|.+++.+.+..|.+. .++..+..
T Consensus 209 n~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~w-i~~~~nle~l~~n~N~l~-~lp~ri~~ 285 (1081)
T KOG0618|consen 209 NQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEW-IGACANLEALNANHNRLV-ALPLRISR 285 (1081)
T ss_pred cccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHH-HHhcccceEecccchhHH-hhHHHHhh
Confidence 1222222211110000 0000 0112346777777777665 45554 367777777777777663 34444555
Q ss_pred CccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccc-cCCCC-CcEEeccCCcCCCcccchhhcCCCcc
Q 048657 218 HKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSF-GNMKF-LQILDLSNNHLTGEIPEHLAVGCVNL 295 (456)
Q Consensus 218 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l-~~~~~-L~~L~l~~~~l~~~~~~~~~~~~~~L 295 (456)
..+|+.+.+..|++. .+|.... .+.+|+.|++..|.+. .+|+.+ ..... +..|+.+.+.+. ..+..-....+.|
T Consensus 286 ~~~L~~l~~~~nel~-yip~~le-~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~L 361 (1081)
T KOG0618|consen 286 ITSLVSLSAAYNELE-YIPPFLE-GLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAAL 361 (1081)
T ss_pred hhhHHHHHhhhhhhh-hCCCccc-ccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHH
Confidence 667777777777765 3443333 2667777877777765 333322 22222 445555555554 4443333346678
Q ss_pred cEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCC
Q 048657 296 ESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN 375 (456)
Q Consensus 296 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 375 (456)
+.|.+.+|.+++.....+.++++|+.|+++.|++....+..+.+++.|++|++++|.++ .+|+.+..+..|++|..-+|
T Consensus 362 q~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 362 QELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSN 440 (1081)
T ss_pred HHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCC
Confidence 99999999999988888899999999999999998445566789999999999999998 88899999999999999999
Q ss_pred cccccCchhccCCCCCCeEeCcCCccCCCCCccccc-ccccEEEccCcccCCCCCcccccCCCcceEEEccCc
Q 048657 376 HLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHP-LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 447 (456)
Q Consensus 376 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 447 (456)
.+. ..| .+..++.|+.+|++.|.++........+ ++|++||++||.-. .+....|..+.++...+++=+
T Consensus 441 ~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l-~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 441 QLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL-VFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred cee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc-ccchhhhHHhhhhhheecccC
Confidence 997 445 7889999999999999998766555556 89999999999852 556665666677766666644
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.4e-21 Score=205.43 Aligned_cols=338 Identities=20% Similarity=0.179 Sum_probs=169.8
Q ss_pred hHHhhcCCCccEEeccCCCCC-------CcccccccCC-CCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcccccc
Q 048657 13 QIIGESMPSLKYLSLSDSNSS-------RILDRGLCSL-VHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSI 84 (456)
Q Consensus 13 ~~~~~~~~~L~~L~L~~~~~~-------~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~ 84 (456)
..|.+ |++|+.|.+..+... .++ +.|..+ ++|+.|.+.++.+. .+|..+ ...+|+.|+++++.+. .+
T Consensus 552 ~aF~~-m~~L~~L~~~~~~~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 552 NAFKG-MRNLLFLKFYTKKWDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred HHHhc-CccccEEEEecccccccccceeecC-cchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cc
Confidence 44666 999999998654321 233 355555 45999999998887 667766 4689999999999988 67
Q ss_pred CCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchH
Q 048657 85 SSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPK 164 (456)
Q Consensus 85 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 164 (456)
+. .+..+++|++|+++++......+ .+..+++|+.|++++|......+. .+....+|+.|++..+. ....+|.
T Consensus 627 ~~-~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~---si~~L~~L~~L~L~~c~-~L~~Lp~ 699 (1153)
T PLN03210 627 WD-GVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELPS---SIQYLNKLEDLDMSRCE-NLEILPT 699 (1153)
T ss_pred cc-ccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccch---hhhccCCCCEEeCCCCC-CcCccCC
Confidence 66 67789999999999875432232 466788999999988753211111 11222344444443221 1112222
Q ss_pred HhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCC------CCchh
Q 048657 165 FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRG------HIPVE 238 (456)
Q Consensus 165 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------~~~~~ 238 (456)
.+ .+++|+.|++++|.....++. ...+|+.|++..+.+.. ++..+ .+++|+.|.+.++.... ..+..
T Consensus 700 ~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred cC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchh
Confidence 22 344555555555433222221 12344445554444332 11111 23444444443321100 00011
Q ss_pred hhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCccccccccccccccc
Q 048657 239 IGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLAN 318 (456)
Q Consensus 239 ~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 318 (456)
.....++|+.|++++|.....+|.+++++++|+.|++++|...+.+|... .+++|++|++++|......+. ...+
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~---~~~n 847 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPD---ISTN 847 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCccccccc---cccc
Confidence 11113345555555554444445555555555555555543222333322 244555555555432221111 1234
Q ss_pred ccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCC
Q 048657 319 LKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN 375 (456)
Q Consensus 319 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 375 (456)
|+.|+++++.+. .+|..+..+++|+.|++++|.--..++..+..+++|+.+++++|
T Consensus 848 L~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 848 ISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred cCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 455555555444 34444445555555555554322234444444455555555544
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=1.3e-24 Score=187.53 Aligned_cols=407 Identities=20% Similarity=0.180 Sum_probs=255.3
Q ss_pred hhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccC-CccccccCCCC
Q 048657 10 SFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS-NQLTGSISSSP 88 (456)
Q Consensus 10 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~i~~~~~~~~ 88 (456)
++|.+++. .-..+.|..|.|+.+|+++|..+++|++|+|++|.|+.+.|.+|..+++|.+|-+.+ |+|+ .++.+.
T Consensus 60 eVP~~LP~---~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~ 135 (498)
T KOG4237|consen 60 EVPANLPP---ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGA 135 (498)
T ss_pred cCcccCCC---cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhH
Confidence 34444444 677888999999999999999999999999999999999999999999887777666 8899 899889
Q ss_pred CcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCC-CCCCchHHhh
Q 048657 89 LVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYE-DGVTFPKFLY 167 (456)
Q Consensus 89 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~l~ 167 (456)
|.++..|+.|.+.-|++. -+..+.+..+++++.|.+-+|.+..+....+ .....++.+.+..+.. .+-.++ ++.
T Consensus 136 F~gL~slqrLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf---~~l~~i~tlhlA~np~icdCnL~-wla 210 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTF---QGLAAIKTLHLAQNPFICDCNLP-WLA 210 (498)
T ss_pred hhhHHHHHHHhcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccc---cchhccchHhhhcCccccccccc-hhh
Confidence 999999999999888776 3455677888888888888777654332221 2222333333322210 000000 000
Q ss_pred cCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCcc-CCccccEEeCCCCccCCCCchhhhccCCcc
Q 048657 168 HQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIH-SHKQLRLLDISTNNFRGHIPVEIGDVLPSL 246 (456)
Q Consensus 168 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 246 (456)
..-....... ++........+.+..+...-...+. ....+.+--.+.+......|...+..+++|
T Consensus 211 ~~~a~~~iet--------------sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L 276 (498)
T KOG4237|consen 211 DDLAMNPIET--------------SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNL 276 (498)
T ss_pred hHHhhchhhc--------------ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccc
Confidence 0000000000 1111111111111111111111110 011111111222333345566667778899
Q ss_pred eEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccC
Q 048657 247 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEG 326 (456)
Q Consensus 247 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 326 (456)
+.+++++|.++..-..+|.....+++|.+..|.+. .+...++.++..|++|++.+|+++...+..|.....|.+|++-.
T Consensus 277 ~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 277 RKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLS 355 (498)
T ss_pred eEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehcc
Confidence 99999999888877888888899999999999887 77777777888999999999999888888888888888888877
Q ss_pred cccccc-------------c---cccccCCCCCcEEEcCCCcCccc---cCcc---------ccCCCCCcE-EEcCCCcc
Q 048657 327 NRFVGE-------------I---PQSLSKCSSLEGLHLNNNSLSGR---IPRW---------LGNLTWLQY-IIMPNNHL 377 (456)
Q Consensus 327 ~~~~~~-------------~---~~~~~~l~~L~~L~l~~~~~~~~---~~~~---------~~~~~~L~~-L~l~~~~~ 377 (456)
|++.-. . .....+...++.+.+++..+.+. .|+. -..|+-+.+ ...++..+
T Consensus 356 Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~l 435 (498)
T KOG4237|consen 356 NPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLL 435 (498)
T ss_pred CcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccch
Confidence 754210 0 00111234566667766644321 2221 112333332 22222222
Q ss_pred cccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCc
Q 048657 378 EGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 447 (456)
Q Consensus 378 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 447 (456)
. ..|..+- ..-+.+++.+|.++..+.. ...++ .+|+++|.+. .+....|.++..|.+|.|++|
T Consensus 436 k-~lp~~iP--~d~telyl~gn~~~~vp~~--~~~~l-~~dls~n~i~-~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 436 K-LLPRGIP--VDVTELYLDGNAITSVPDE--LLRSL-LLDLSNNRIS-SLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred h-hcCCCCC--chhHHHhcccchhcccCHH--HHhhh-hcccccCcee-hhhcccccchhhhheeEEecC
Confidence 2 3333221 1456789999999866554 45677 8999999995 788888999999999999986
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=1.9e-22 Score=174.36 Aligned_cols=269 Identities=17% Similarity=0.150 Sum_probs=194.6
Q ss_pred ccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEccc-CcccccchhhhhcCCCCcEEeccCCccc
Q 048657 3 TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDN-NDLRGSLPWCLANMTSLRILDVSSNQLT 81 (456)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 81 (456)
..|+++..-+.+|.. +++||+|||+.|.|..+.+++|.+++.+..|.+.+ |+|++.....|.++..|+.|.+..|.+.
T Consensus 75 dqN~I~~iP~~aF~~-l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~ 153 (498)
T KOG4237|consen 75 DQNQISSIPPGAFKT-LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHIN 153 (498)
T ss_pred ccCCcccCChhhccc-hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhc
Confidence 467777766677777 99999999999999999999999999999998877 8999777789999999999999999998
Q ss_pred cccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCcc-ccceeeccCCC--C-
Q 048657 82 GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKF-QLSRLSLSSGY--E- 157 (456)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~l~l~~~~--~- 157 (456)
-+..+++..+++|..|.+.+|.+. .+....+..+..++.+.+..|.+...- .+.+.. -+....++-.. .
T Consensus 154 -Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdC-----nL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 154 -CIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDC-----NLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred -chhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccccc-----ccchhhhHHhhchhhcccceec
Confidence 777779999999999999999876 444456777788888877766642110 000000 00000000000 0
Q ss_pred --------CCCCchHHhh--cCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCC
Q 048657 158 --------DGVTFPKFLY--HQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDIS 227 (456)
Q Consensus 158 --------~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 227 (456)
...+.++.-. ....+.+--.+.+......|...+..+++|++|++++|+++.+-...|....++++|.+.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 0000000000 001111122234445567777778888999999999999888888888888999999999
Q ss_pred CCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcC
Q 048657 228 TNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 280 (456)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 280 (456)
.|++. .+....+..+..|+.|++.+|+++...|.+|.....|.+|++-.|.+
T Consensus 307 ~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 307 RNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 88876 66666777788899999999988877888888888888888866543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=9.5e-18 Score=164.46 Aligned_cols=241 Identities=25% Similarity=0.274 Sum_probs=179.4
Q ss_pred CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEE
Q 048657 170 HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF 249 (456)
Q Consensus 170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 249 (456)
++++.|++.+|.+.. +|. ..++|++|+++.|.+.... . ..++|+.|++.+|.+. .+|. .+.+|+.|
T Consensus 222 ~~L~~L~L~~N~Lt~-LP~----lp~~Lk~LdLs~N~LtsLP-~---lp~sL~~L~Ls~N~L~-~Lp~----lp~~L~~L 287 (788)
T PRK15387 222 AHITTLVIPDNNLTS-LPA----LPPELRTLEVSGNQLTSLP-V---LPPGLLELSIFSNPLT-HLPA----LPSGLCKL 287 (788)
T ss_pred cCCCEEEccCCcCCC-CCC----CCCCCcEEEecCCccCccc-C---cccccceeeccCCchh-hhhh----chhhcCEE
Confidence 368888888887763 442 3578888999888777532 2 2468889999988876 4443 24678889
Q ss_pred EccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccc
Q 048657 250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRF 329 (456)
Q Consensus 250 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 329 (456)
++++|.+. .+|. ..++|+.|++++|.+. .++. ...+|+.|.+.+|.+..... ...+|+.|++++|++
T Consensus 288 ~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~----lp~~L~~L~Ls~N~L~~LP~----lp~~Lq~LdLS~N~L 354 (788)
T PRK15387 288 WIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTSLPT----LPSGLQELSVSDNQL 354 (788)
T ss_pred ECcCCccc-cccc---cccccceeECCCCccc-cCCC----CcccccccccccCccccccc----cccccceEecCCCcc
Confidence 99998876 3443 2478999999999887 5554 23568889999998875331 235799999999998
Q ss_pred cccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCccc
Q 048657 330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF 409 (456)
Q Consensus 330 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 409 (456)
. .+|.. .++|+.|++++|.+. .+|.. .++|+.|++++|.+... |.. .++|+.|++++|++++.+ ..
T Consensus 355 s-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~L-P~l---~s~L~~LdLS~N~LssIP-~l- 420 (788)
T PRK15387 355 A-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSL-PVL---PSELKELMVSGNRLTSLP-ML- 420 (788)
T ss_pred C-CCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCC-CCc---ccCCCEEEccCCcCCCCC-cc-
Confidence 7 45543 357888999999887 45543 35799999999999854 322 358999999999998643 22
Q ss_pred ccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCC
Q 048657 410 HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 454 (456)
Q Consensus 410 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p 454 (456)
+.+|+.|++++|++. .+|.. +..+++|+.|++++|++++.+|
T Consensus 421 -~~~L~~L~Ls~NqLt-~LP~s-l~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 421 -PSGLLSLSVYRNQLT-RLPES-LIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred -hhhhhhhhhccCccc-ccChH-HhhccCCCeEECCCCCCCchHH
Confidence 457889999999995 78776 7889999999999999998754
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=2.3e-17 Score=161.82 Aligned_cols=58 Identities=31% Similarity=0.388 Sum_probs=25.2
Q ss_pred cccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCccccc
Q 048657 318 NLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGL 380 (456)
Q Consensus 318 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 380 (456)
+|+.|++++|.+. .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++.
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 4444444444443 22221 123444444444444 3444444444444444444444433
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=5.1e-18 Score=155.76 Aligned_cols=280 Identities=22% Similarity=0.171 Sum_probs=143.9
Q ss_pred eeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchh---hhhccccceeeeecccCcCCCCCcCccCCccccEEeC
Q 048657 150 LSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTW---LLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDI 226 (456)
Q Consensus 150 l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 226 (456)
|++.............+..+++|+.++++++.+.+..... .....+.++++++..+.+... +..+
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~~~~----------- 70 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-PRGL----------- 70 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-chHH-----------
Confidence 3443444444555666667777888888887764322211 122334455555554433210 0000
Q ss_pred CCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCC---CCcEEeccCCcCCCcccch---hhcCC-CcccEEE
Q 048657 227 STNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMK---FLQILDLSNNHLTGEIPEH---LAVGC-VNLESLA 299 (456)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~---~L~~L~l~~~~l~~~~~~~---~~~~~-~~L~~L~ 299 (456)
..++..+.. +++|+.++++++.+....+..+..+. +|++|++++|.+.+..... ....+ ++|+.++
T Consensus 71 ------~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~ 143 (319)
T cd00116 71 ------QSLLQGLTK-GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143 (319)
T ss_pred ------HHHHHHHHh-cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE
Confidence 001111111 44555555555555433333333333 3666666666554211111 11233 5667777
Q ss_pred ccCCccccc----ccccccccccccEEEccCcccccc----ccccccCCCCCcEEEcCCCcCccc----cCccccCCCCC
Q 048657 300 LSNNNLEGH----MFSRNFNLANLKLLQLEGNRFVGE----IPQSLSKCSSLEGLHLNNNSLSGR----IPRWLGNLTWL 367 (456)
Q Consensus 300 l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L 367 (456)
+++|.++.. ....+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++. +...+..+++|
T Consensus 144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L 223 (319)
T cd00116 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL 223 (319)
T ss_pred cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCC
Confidence 777666521 222334455677777777766531 223344556777777777766532 23345566777
Q ss_pred cEEEcCCCcccccCchhcc-----CCCCCCeEeCcCCccCCCCCccc-----ccccccEEEccCcccCCC----CCcccc
Q 048657 368 QYIIMPNNHLEGLIPVEFC-----QLDSLQILDISDNNISGSLPACF-----HPLSIKQVHLSKNMLHGQ----LKRGTF 433 (456)
Q Consensus 368 ~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~~~~-----~~~~L~~l~l~~~~~~~~----~~~~~~ 433 (456)
++|++++|.+++.....+. ..+.|++|++++|.++......+ ..++|+++++++|.+... +... +
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~-~ 302 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES-L 302 (319)
T ss_pred CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH-H
Confidence 7777777776642222221 23677788887777753221111 135677788887777532 1111 2
Q ss_pred cCC-CcceEEEccCccc
Q 048657 434 FNC-SSLVTLDLSYNRL 449 (456)
Q Consensus 434 ~~~-~~L~~L~l~~~~l 449 (456)
... +.|+++++.+|++
T Consensus 303 ~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 303 LEPGNELESLWVKDDSF 319 (319)
T ss_pred hhcCCchhhcccCCCCC
Confidence 333 6777888777763
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=1.5e-17 Score=152.68 Aligned_cols=259 Identities=20% Similarity=0.176 Sum_probs=135.8
Q ss_pred ccccceeeccCCCCCC---CCchHHhhcCCCccEEEecCccccc--ccch---hhhhccccceeeeecccCcCCCCCcCc
Q 048657 144 KFQLSRLSLSSGYEDG---VTFPKFLYHQHDLEYVDLSHIKMNG--EFPT---WLLENNTKLIQLSVVNDSLAGPFRLPI 215 (456)
Q Consensus 144 ~~~L~~l~l~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~l 215 (456)
..+++.+++....... ..+++.+...+.++.++++++.+.. .... ..+..+++|++|++++|.+.......+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 3368899997665433 2356667778889999999887652 1111 112334566666665555543222222
Q ss_pred cCC---ccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCC-CCCcEEeccCCcCCCcccch---h
Q 048657 216 HSH---KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNM-KFLQILDLSNNHLTGEIPEH---L 288 (456)
Q Consensus 216 ~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~l~~~~~~~---~ 288 (456)
..+ ++|++|++++|.+.+.... .+...+..+ ++|+.|++++|.+.+..... .
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~---------------------~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLR---------------------LLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHH---------------------HHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 222 2255555554443311110 112233344 55666666666554322111 1
Q ss_pred hcCCCcccEEEccCCcccccc----cccccccccccEEEccCcccccc----ccccccCCCCCcEEEcCCCcCccccCcc
Q 048657 289 AVGCVNLESLALSNNNLEGHM----FSRNFNLANLKLLQLEGNRFVGE----IPQSLSKCSSLEGLHLNNNSLSGRIPRW 360 (456)
Q Consensus 289 ~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 360 (456)
+..+++|++|++++|.+.+.. ...+...++|+.|++++|.+.+. ....+..+++|++|++++|.+++.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 223455666666666555321 11222345667777766665422 2334456677777777777666422222
Q ss_pred cc-----CCCCCcEEEcCCCcccc----cCchhccCCCCCCeEeCcCCccCCCCCcccc-----c-ccccEEEccCcc
Q 048657 361 LG-----NLTWLQYIIMPNNHLEG----LIPVEFCQLDSLQILDISDNNISGSLPACFH-----P-LSIKQVHLSKNM 423 (456)
Q Consensus 361 ~~-----~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-----~-~~L~~l~l~~~~ 423 (456)
+. ..+.|++|++++|.++. .....+..+++|+.+++++|.+......... . +.++++++.++.
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 21 23677777777777652 1223445556777777777777654322221 2 467777776664
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=5.9e-16 Score=152.88 Aligned_cols=248 Identities=20% Similarity=0.314 Sum_probs=181.1
Q ss_pred CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEE
Q 048657 170 HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF 249 (456)
Q Consensus 170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 249 (456)
.+...|+++++.+. .+|..+ .+.++.|++++|.+.... ..+ .++|+.|++++|.+. .+|..+. ++|+.|
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~LtsLP-~~l--~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELKSLP-ENL--QGNIKTLYANSNQLT-SIPATLP---DTIQEM 246 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCcCC-hhh--ccCCCEEECCCCccc-cCChhhh---ccccEE
Confidence 45677888887765 445432 346888999888877533 222 358999999999887 6666443 478999
Q ss_pred EccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccc
Q 048657 250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRF 329 (456)
Q Consensus 250 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 329 (456)
++++|.+. .+|..+. .+|+.|++++|.+. .+|..+ +++|++|++++|.+..... .+ .++|+.|++++|.+
T Consensus 247 ~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l---~~sL~~L~Ls~N~Lt~LP~-~l--p~sL~~L~Ls~N~L 316 (754)
T PRK15370 247 ELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL---PEELRYLSVYDNSIRTLPA-HL--PSGITHLNVQSNSL 316 (754)
T ss_pred ECcCCccC-cCChhHh--CCCCEEECcCCccC-cccccc---CCCCcEEECCCCccccCcc-cc--hhhHHHHHhcCCcc
Confidence 99999887 5565553 57999999999887 666543 3589999999998876432 22 35788999999988
Q ss_pred cccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCccc
Q 048657 330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF 409 (456)
Q Consensus 330 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 409 (456)
. .+|..+ .++|+.|++++|.++ .+|..+. ++|+.|++++|.++. +|..+ .++|+.|++++|.++..+...
T Consensus 317 t-~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~LP~~l- 386 (754)
T PRK15370 317 T-ALPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNLPENL- 386 (754)
T ss_pred c-cCCccc--cccceeccccCCccc-cCChhhc--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCCCHhH-
Confidence 7 455433 368999999999887 4666553 789999999999874 44444 358999999999998654432
Q ss_pred ccccccEEEccCcccCCCCCcc---cccCCCcceEEEccCcccC
Q 048657 410 HPLSIKQVHLSKNMLHGQLKRG---TFFNCSSLVTLDLSYNRLN 450 (456)
Q Consensus 410 ~~~~L~~l~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~l~ 450 (456)
+.+|+.|++++|++. .+|.. .+..++++..|++.+|+++
T Consensus 387 -~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 387 -PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 347999999999986 56654 2344588899999999985
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=4.1e-16 Score=154.03 Aligned_cols=121 Identities=24% Similarity=0.312 Sum_probs=63.6
Q ss_pred CCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEc
Q 048657 269 FLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHL 348 (456)
Q Consensus 269 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 348 (456)
+|+.|++++|.+. .+|... .++|+.|++++|.++... ..+ +++|+.|++++|.+. .+|..+ .++|+.|++
T Consensus 305 sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdL 374 (754)
T PRK15370 305 GITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDV 374 (754)
T ss_pred hHHHHHhcCCccc-cCCccc---cccceeccccCCccccCC-hhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEEC
Confidence 3455555555554 333221 245555555555554422 222 245666666666665 344333 246666777
Q ss_pred CCCcCccccCccccCCCCCcEEEcCCCccccc---CchhccCCCCCCeEeCcCCccC
Q 048657 349 NNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGL---IPVEFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~l~ 402 (456)
++|.++ .+|..+. .+|+.|++++|++.+. ++..+...+++..+++.+|++.
T Consensus 375 s~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 375 SRNALT-NLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 766665 4444443 2566677777766532 1222334466677777777665
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=1.4e-15 Score=117.18 Aligned_cols=135 Identities=22% Similarity=0.359 Sum_probs=116.1
Q ss_pred HhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCC
Q 048657 15 IGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTS 94 (456)
Q Consensus 15 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~ 94 (456)
+.. +.+.++|.|++|.++..++ .++.+++|+.|++.+|+++ .+|..++++++|+.|+++-|++. .+|. .|+.+|-
T Consensus 29 Lf~-~s~ITrLtLSHNKl~~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lpr-gfgs~p~ 103 (264)
T KOG0617|consen 29 LFN-MSNITRLTLSHNKLTVVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPR-GFGSFPA 103 (264)
T ss_pred ccc-hhhhhhhhcccCceeecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcc-ccCCCch
Confidence 445 6788999999999988886 8999999999999999999 89999999999999999999987 6776 8999999
Q ss_pred ccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccE
Q 048657 95 IEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEY 174 (456)
Q Consensus 95 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~ 174 (456)
|++|++.+|.+.....++.+..+..|+.+++++|.+. .+|..++++.+|+.
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-----------------------------~lp~dvg~lt~lqi 154 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-----------------------------ILPPDVGKLTNLQI 154 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-----------------------------cCChhhhhhcceeE
Confidence 9999999999987788899999999999999988763 34556667777777
Q ss_pred EEecCcccc
Q 048657 175 VDLSHIKMN 183 (456)
Q Consensus 175 L~l~~~~~~ 183 (456)
|.+..+.+.
T Consensus 155 l~lrdndll 163 (264)
T KOG0617|consen 155 LSLRDNDLL 163 (264)
T ss_pred EeeccCchh
Confidence 777766543
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=8.1e-16 Score=118.39 Aligned_cols=153 Identities=27% Similarity=0.406 Sum_probs=70.7
Q ss_pred CcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEE
Q 048657 244 PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQ 323 (456)
Q Consensus 244 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 323 (456)
..+..+.++++.++ .+|..+..+.+|+.|++.++++. ++|..+. .+++|+.|+++-|++.. .+..|+.++.|+.|+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~~-lprgfgs~p~levld 108 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLNI-LPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhhc-CccccCCCchhhhhh
Confidence 34444555555544 34444445555555555555554 4444443 34455555554444321 233344444444444
Q ss_pred ccCcccc-ccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657 324 LEGNRFV-GEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 324 l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 402 (456)
+..|.+. ...|..|..+..|+-|++++|++. .+|..++++++|+.|.+.+|++. ..|..+..+++|+.|.+.||+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 4444432 123444444444444444444443 44444444444444444444444 23444444444444444444444
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.23 E-value=4.8e-13 Score=115.02 Aligned_cols=242 Identities=22% Similarity=0.229 Sum_probs=113.6
Q ss_pred chHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCc---cCCCCchh
Q 048657 162 FPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNN---FRGHIPVE 238 (456)
Q Consensus 162 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~~~~~~ 238 (456)
+.+.+.....+..++++++.+......+....+. +.++|+..+++..- ....+|..
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~---------------------~~~~L~~v~~sd~ftGR~~~Ei~e~ 80 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLA---------------------SKKELREVNLSDMFTGRLKDEIPEA 80 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHh---------------------hcccceeeehHhhhcCCcHHHHHHH
Confidence 3445556677888899888877655555433222 22333333333210 00111211
Q ss_pred hh------ccCCcceEEEccCCccCCCcc----ccccCCCCCcEEeccCCcCCCcccchh------------hcCCCccc
Q 048657 239 IG------DVLPSLYVFNNSMNALDGSIP----SSFGNMKFLQILDLSNNHLTGEIPEHL------------AVGCVNLE 296 (456)
Q Consensus 239 ~~------~~~~~L~~l~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~~~~~~~------------~~~~~~L~ 296 (456)
+- ..++.|++++++.|-+....+ .-+.++..|++|.+.+|.+.......+ ....+.|+
T Consensus 81 L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lr 160 (382)
T KOG1909|consen 81 LKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLR 160 (382)
T ss_pred HHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceE
Confidence 11 113456666666555442222 234567778888888887652211111 11234566
Q ss_pred EEEccCCcccccc----cccccccccccEEEccCccccc----cccccccCCCCCcEEEcCCCcCccc----cCccccCC
Q 048657 297 SLALSNNNLEGHM----FSRNFNLANLKLLQLEGNRFVG----EIPQSLSKCSSLEGLHLNNNSLSGR----IPRWLGNL 364 (456)
Q Consensus 297 ~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~ 364 (456)
++....|++.... ...+...+.|+.+.+..|.+.. .....+.+|+.|+.|++.+|.++.. +...++..
T Consensus 161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~ 240 (382)
T KOG1909|consen 161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW 240 (382)
T ss_pred EEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc
Confidence 6666665554321 1223334555555555555431 1233445555555555555554422 22334444
Q ss_pred CCCcEEEcCCCcccccCchhc-----cCCCCCCeEeCcCCccCCCCCcccc-----cccccEEEccCccc
Q 048657 365 TWLQYIIMPNNHLEGLIPVEF-----CQLDSLQILDISDNNISGSLPACFH-----PLSIKQVHLSKNML 424 (456)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~~-----~~~L~~l~l~~~~~ 424 (456)
++|+++++++|.+......++ ...|+|+.+.+.+|.++........ .+.|..|+|++|.+
T Consensus 241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 555555555555443222211 1245555555555555433222111 33455555555544
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.22 E-value=1.2e-12 Score=112.65 Aligned_cols=244 Identities=19% Similarity=0.211 Sum_probs=151.0
Q ss_pred CCCccccceeeccCCCCCCC---CchHHhhcCCCccEEEecCccc---ccccchhhhhccccceeeeecccCcCCCCCcC
Q 048657 141 IPPKFQLSRLSLSSGYEDGV---TFPKFLYHQHDLEYVDLSHIKM---NGEFPTWLLENNTKLIQLSVVNDSLAGPFRLP 214 (456)
Q Consensus 141 ~~~~~~L~~l~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 214 (456)
..+...++.++++++..... .+...+...+.|+..+++.-.. .++++..+- .+...
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~------------------~l~~a 87 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALK------------------MLSKA 87 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHH------------------HHHHH
Confidence 34555788888866544332 2345556677888888876422 223332210 01112
Q ss_pred ccCCccccEEeCCCCccCCCCchhhhc---cCCcceEEEccCCccCCC-------------ccccccCCCCCcEEeccCC
Q 048657 215 IHSHKQLRLLDISTNNFRGHIPVEIGD---VLPSLYVFNNSMNALDGS-------------IPSSFGNMKFLQILDLSNN 278 (456)
Q Consensus 215 l~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~L~~l~l~~~~~~~~-------------~~~~l~~~~~L~~L~l~~~ 278 (456)
+..+++|+.++++.|.+....+..+.. .+..|+.|.+.+|.+... ........+.|+.+.+++|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 233344444444444443332222221 134455555555544311 1122456788999999999
Q ss_pred cCCCcccc---hhhcCCCcccEEEccCCccccc----ccccccccccccEEEccCccccc----cccccccCCCCCcEEE
Q 048657 279 HLTGEIPE---HLAVGCVNLESLALSNNNLEGH----MFSRNFNLANLKLLQLEGNRFVG----EIPQSLSKCSSLEGLH 347 (456)
Q Consensus 279 ~l~~~~~~---~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~ 347 (456)
.+.+.... ..+...+.|+.+.+..|.+... ....+..+++|+.|+|.+|.++. .+...++.++.|+.|+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 87633222 2344568899999999987632 33456689999999999998863 2455677889999999
Q ss_pred cCCCcCccccCccc-----cCCCCCcEEEcCCCcccc----cCchhccCCCCCCeEeCcCCccC
Q 048657 348 LNNNSLSGRIPRWL-----GNLTWLQYIIMPNNHLEG----LIPVEFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 348 l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~ 402 (456)
+++|.+.......+ ...++|+.+.+.+|.++. ....++...+.|++|++++|++.
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 99998875543322 247899999999999863 23345566889999999999983
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=1e-11 Score=100.21 Aligned_cols=130 Identities=28% Similarity=0.341 Sum_probs=56.5
Q ss_pred CCCccEEeccCCCCCCccccccc-CCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCC-cCCCCcc
Q 048657 19 MPSLKYLSLSDSNSSRILDRGLC-SLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL-VHLTSIE 96 (456)
Q Consensus 19 ~~~L~~L~L~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~-~~l~~L~ 96 (456)
+.++|+|+|+++.++.+. .+. .+.+|+.|++++|.++.. +.+..+++|++|++++|+|+ .+.. .+ ..+++|+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~-~l~~~lp~L~ 91 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISE-GLDKNLPNLQ 91 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CH-HHHHH-TT--
T ss_pred cccccccccccccccccc--chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-cccc-chHHhCCcCC
Confidence 456999999999988875 465 688999999999999833 36788999999999999999 6654 34 4689999
Q ss_pred EEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEE
Q 048657 97 ELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVD 176 (456)
Q Consensus 97 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ 176 (456)
+|.+++|++........+..+++|+.|++.+|.++.. ...-...+..+|+|+.||
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-------------------------~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-------------------------KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-------------------------TTHHHHHHHH-TT-SEET
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-------------------------hhHHHHHHHHcChhheeC
Confidence 9999999998666677888999999999999987532 112234556778888887
Q ss_pred ecC
Q 048657 177 LSH 179 (456)
Q Consensus 177 l~~ 179 (456)
-..
T Consensus 147 ~~~ 149 (175)
T PF14580_consen 147 GQD 149 (175)
T ss_dssp TEE
T ss_pred CEE
Confidence 644
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=5.6e-12 Score=111.65 Aligned_cols=213 Identities=23% Similarity=0.217 Sum_probs=116.4
Q ss_pred hccccceeeeecccCcCCCCC-cCccCCccccEEeCCCCccCCC-CchhhhccCCcceEEEccCCccCCCccc-cccCCC
Q 048657 192 ENNTKLIQLSVVNDSLAGPFR-LPIHSHKQLRLLDISTNNFRGH-IPVEIGDVLPSLYVFNNSMNALDGSIPS-SFGNMK 268 (456)
Q Consensus 192 ~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~l~~~~ 268 (456)
.+..+|+.+.+.++.+..... .-...+++++.|++++|-+..- ....+.+.+++|+.|+++.|.+...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 355667777776665543221 2345667777777777654421 1223455577777777777765422111 112456
Q ss_pred CCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccc-cccccccCCCCCcEEE
Q 048657 269 FLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVG-EIPQSLSKCSSLEGLH 347 (456)
Q Consensus 269 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~ 347 (456)
.++.|.++.|+++..-..+....+|+|+.|.+..|............+..|++|+|++|++-. .......+++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 677777777776633333444467777777777763211112222345667777777776642 1123455667777777
Q ss_pred cCCCcCccc-cCcc-----ccCCCCCcEEEcCCCccccc-CchhccCCCCCCeEeCcCCccCCC
Q 048657 348 LNNNSLSGR-IPRW-----LGNLTWLQYIIMPNNHLEGL-IPVEFCQLDSLQILDISDNNISGS 404 (456)
Q Consensus 348 l~~~~~~~~-~~~~-----~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~ 404 (456)
++.|++... .|+. ...+++|+.|++..|++.+- ....+..+++|+.|.+.+|+++..
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 777766532 2222 23456677777777666421 112334455666666666666543
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=1.6e-11 Score=103.67 Aligned_cols=135 Identities=25% Similarity=0.258 Sum_probs=104.2
Q ss_pred ccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeE
Q 048657 315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQIL 394 (456)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 394 (456)
.+..|+++++++|.++ .+.+.++-.|.++.|+++.|.+... +.+..+++|..|++++|.++.. ..+-..+-+.++|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEeee
Confidence 4577899999999987 6777888889999999999988633 3488889999999999988743 3444567788999
Q ss_pred eCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCCC
Q 048657 395 DISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455 (456)
Q Consensus 395 ~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~ 455 (456)
.+++|.+.. .......-+|..||+++|++..--....++++|-|+.+.+.+||+. .+|+
T Consensus 358 ~La~N~iE~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~vd 416 (490)
T KOG1259|consen 358 KLAQNKIET-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSVD 416 (490)
T ss_pred ehhhhhHhh-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccch
Confidence 999998763 2233335588999999999854444456889999999999999998 4444
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1.2e-10 Score=93.99 Aligned_cols=127 Identities=26% Similarity=0.254 Sum_probs=49.2
Q ss_pred ccccccEEEccCcccccccccccc-CCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCe
Q 048657 315 NLANLKLLQLEGNRFVGEIPQSLS-KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQI 393 (456)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 393 (456)
++.++++|++.++.+. .+ +.+. .+.+|+.|++++|.++.. +.+..+++|++|++++|.++...+.....+|+|+.
T Consensus 17 n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 5567899999999987 33 3444 578899999999998733 46888999999999999998653322246889999
Q ss_pred EeCcCCccCCCCCc--ccccccccEEEccCcccCCCCCc--ccccCCCcceEEEcc
Q 048657 394 LDISDNNISGSLPA--CFHPLSIKQVHLSKNMLHGQLKR--GTFFNCSSLVTLDLS 445 (456)
Q Consensus 394 L~l~~~~l~~~~~~--~~~~~~L~~l~l~~~~~~~~~~~--~~~~~~~~L~~L~l~ 445 (456)
|++++|++.....- ...+++|+.|++.+|+++..-.. .++..+|+|+.||-.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 99999998764332 12377899999999998633221 245678999988644
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.05 E-value=1.3e-10 Score=117.39 Aligned_cols=107 Identities=21% Similarity=0.213 Sum_probs=83.5
Q ss_pred CCCccEEeccCCC--CCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCcc
Q 048657 19 MPSLKYLSLSDSN--SSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 96 (456)
Q Consensus 19 ~~~L~~L~L~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~ 96 (456)
++.|++|-+.++. +..+..+.|..+|.|++||+++|.--+.+|+.++++-+||+|+++++.+. .+|. .+.++++|.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHHHhhh
Confidence 6678888888875 66777666888899999999887655588899999999999999999888 8887 888888999
Q ss_pred EEEcCCceeeeccCCCcccccccceEEeccCc
Q 048657 97 ELMLSNNHFQIPISLEPFFNHSRLKFFYAENN 128 (456)
Q Consensus 97 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~ 128 (456)
+|++..+... ...+.....+.+||.|.+...
T Consensus 622 ~Lnl~~~~~l-~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 622 YLNLEVTGRL-ESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred eecccccccc-ccccchhhhcccccEEEeecc
Confidence 9998876543 222455666888888877654
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.1e-10 Score=103.53 Aligned_cols=190 Identities=20% Similarity=0.126 Sum_probs=93.3
Q ss_pred HhhcCCCccEEEecCccccccc-chhhhhccccceeeeecccCcCCCCCcCc-cCCccccEEeCCCCccCCCCchhhhcc
Q 048657 165 FLYHQHDLEYVDLSHIKMNGEF-PTWLLENNTKLIQLSVVNDSLAGPFRLPI-HSHKQLRLLDISTNNFRGHIPVEIGDV 242 (456)
Q Consensus 165 ~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~ 242 (456)
....|++++.||+++|=+.... ...++..+++|+.|+++.|.+........ ..+++|+.|.++.|.++..-..+....
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 4455666666666665433211 12234566666666666665543322221 244566666666666554444444444
Q ss_pred CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccc------ccc
Q 048657 243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRN------FNL 316 (456)
Q Consensus 243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------~~~ 316 (456)
+|++..|.+..|............+..|+.|+|++|++-+.-.......++.|..++++.+++.+...... ..+
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF 300 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence 66666666666532112222233355566666666654422212222345666666666665554332221 235
Q ss_pred ccccEEEccCccccc-cccccccCCCCCcEEEcCCCcCc
Q 048657 317 ANLKLLQLEGNRFVG-EIPQSLSKCSSLEGLHLNNNSLS 354 (456)
Q Consensus 317 ~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~ 354 (456)
++|+.|++..|++.. .....+..+++|+.|.+..|.++
T Consensus 301 ~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 301 PKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 566666666666531 11122334455555555555443
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=1.2e-11 Score=113.12 Aligned_cols=169 Identities=28% Similarity=0.409 Sum_probs=83.4
Q ss_pred EEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCC
Q 048657 272 ILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNN 351 (456)
Q Consensus 272 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 351 (456)
..+++.|.+. ++|..+. .|-.|+.+.+..|.+.. ++..+..+..|+.++++.|+++ ..|..++.|+ |+.|-+++|
T Consensus 79 ~aDlsrNR~~-elp~~~~-~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEAC-AFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhccccccc-cCchHHH-HHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 3444444444 4443332 23344444444444332 2233344455555555555554 4444444444 555555555
Q ss_pred cCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcc
Q 048657 352 SLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRG 431 (456)
Q Consensus 352 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 431 (456)
.++ .+|+.++...+|..|+.+.|.+. ..+..+..+.+|+.|+++.|.+...+.... ...|..||++.|++. .+|.+
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCcee-ecchh
Confidence 554 55555555555555555555554 334445555555555555555543333222 445555555555553 44444
Q ss_pred cccCCCcceEEEccCcccC
Q 048657 432 TFFNCSSLVTLDLSYNRLN 450 (456)
Q Consensus 432 ~~~~~~~L~~L~l~~~~l~ 450 (456)
|..+..|++|-|.+||+.
T Consensus 230 -fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 230 -FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred -hhhhhhheeeeeccCCCC
Confidence 555555555555555554
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.01 E-value=3.3e-10 Score=75.14 Aligned_cols=61 Identities=34% Similarity=0.533 Sum_probs=42.5
Q ss_pred CCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcc
Q 048657 20 PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQL 80 (456)
Q Consensus 20 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 80 (456)
|+|++|++++|.++.++.++|.++++|++|++++|.++...+.+|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4667777777777777766777777777777777777656666677777777777776653
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.98 E-value=8.5e-10 Score=104.23 Aligned_cols=175 Identities=34% Similarity=0.445 Sum_probs=88.8
Q ss_pred CcceEEEccCCccCCCccccccCCC-CCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657 244 PSLYVFNNSMNALDGSIPSSFGNMK-FLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL 322 (456)
Q Consensus 244 ~~L~~l~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 322 (456)
+.+..+.+..+.++ .++....... +|+.|+++++.+. .++... ..+++|+.|++++|++.+.... .+..+.|+.|
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhh-hccccccccccCCchhhhhhhh-hhhhhhhhhe
Confidence 45666666666555 3334444442 5666666666555 433222 2455666666666655543321 1144555666
Q ss_pred EccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657 323 QLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 323 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 402 (456)
++++|.+. .+|........|+++.+++|... ..+..+..+.++..+.+.+|++... +..+..++.++.|++++|.++
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~ 268 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQIS 268 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccccc
Confidence 66666655 34433334444556666655322 3444455555555555555555421 344445555666666665555
Q ss_pred CCCCcccccccccEEEccCcccCC
Q 048657 403 GSLPACFHPLSIKQVHLSKNMLHG 426 (456)
Q Consensus 403 ~~~~~~~~~~~L~~l~l~~~~~~~ 426 (456)
.... .....+++.++++++.+..
T Consensus 269 ~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 269 SISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cccc-ccccCccCEEeccCccccc
Confidence 4433 3234455555555555543
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.90 E-value=1.1e-09 Score=110.65 Aligned_cols=114 Identities=25% Similarity=0.300 Sum_probs=85.6
Q ss_pred hhhhHHhhcCCCccEEeccCCC-CCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCC
Q 048657 10 SFLQIIGESMPSLKYLSLSDSN-SSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 88 (456)
Q Consensus 10 ~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 88 (456)
.++.++...+|.|++|||++|. ...+| +.++++-+||+|+++++.+. .+|..+.+++.|.+|++..+.-...++ ..
T Consensus 561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP-~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~-~i 637 (889)
T KOG4658|consen 561 EISGEFFRSLPLLRVLDLSGNSSLSKLP-SSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIP-GI 637 (889)
T ss_pred hcCHHHHhhCcceEEEECCCCCccCcCC-hHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheecccccccccccc-ch
Confidence 3444545559999999999888 77777 68999999999999999999 999999999999999999986553443 35
Q ss_pred CcCCCCccEEEcCCceee-eccCCCcccccccceEEecc
Q 048657 89 LVHLTSIEELMLSNNHFQ-IPISLEPFFNHSRLKFFYAE 126 (456)
Q Consensus 89 ~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~l~l~ 126 (456)
...+++|++|.+...... .......+..+.+|+.+...
T Consensus 638 ~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 638 LLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred hhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 556999999999865421 12223344455555555553
No 35
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.89 E-value=5e-11 Score=105.15 Aligned_cols=155 Identities=21% Similarity=0.151 Sum_probs=91.1
Q ss_pred cCCcceEEEccCCccCCC-cccc-ccCCCCCcEEeccCCc-CCCcccchhhcCCCcccEEEccCCcccc-c-cccccccc
Q 048657 242 VLPSLYVFNNSMNALDGS-IPSS-FGNMKFLQILDLSNNH-LTGEIPEHLAVGCVNLESLALSNNNLEG-H-MFSRNFNL 316 (456)
Q Consensus 242 ~~~~L~~l~l~~~~~~~~-~~~~-l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~~~~-~-~~~~~~~~ 316 (456)
.+..|+.+..+++...+. ...+ -.++++|+.+.++.|+ +++..-..+...++.|+.+++.++.... . ....-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 345566666655543221 1112 2456777777777774 3322223445567788888888775432 1 11222367
Q ss_pred ccccEEEccCcccc-cc----ccccccCCCCCcEEEcCCCcC-ccccCccccCCCCCcEEEcCCCcc-cccCchh-ccCC
Q 048657 317 ANLKLLQLEGNRFV-GE----IPQSLSKCSSLEGLHLNNNSL-SGRIPRWLGNLTWLQYIIMPNNHL-EGLIPVE-FCQL 388 (456)
Q Consensus 317 ~~L~~L~l~~~~~~-~~----~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~-~~~~ 388 (456)
+.|+.+.+++|... +. ....-.....++.++++++.. ++...+.+..|++|+.+++.+|+- +...... -..+
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l 451 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL 451 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence 88888888877642 11 122334567788899998864 456677888889999999888853 3222222 2356
Q ss_pred CCCCeEeC
Q 048657 389 DSLQILDI 396 (456)
Q Consensus 389 ~~L~~L~l 396 (456)
|+++..-+
T Consensus 452 p~i~v~a~ 459 (483)
T KOG4341|consen 452 PNIKVHAY 459 (483)
T ss_pred ccceehhh
Confidence 66655443
No 36
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=4.5e-11 Score=100.83 Aligned_cols=160 Identities=20% Similarity=0.097 Sum_probs=66.9
Q ss_pred cCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCc-cCC-CccccccCCCCCcEEeccCCcCCCcccch-hhcCC
Q 048657 216 HSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA-LDG-SIPSSFGNMKFLQILDLSNNHLTGEIPEH-LAVGC 292 (456)
Q Consensus 216 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~~l~~~~~L~~L~l~~~~l~~~~~~~-~~~~~ 292 (456)
..|.+|+.+.+.++++.+.+...+++ -.+|+.++++++. ++. ..--.+..|+.|.+|+++.|.+..+.... +..--
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 34444444444444444444433333 3445555554432 211 11112344555555555555443222111 11112
Q ss_pred CcccEEEccCCccc--c-cccccccccccccEEEccCccc-cccccccccCCCCCcEEEcCCCcC-ccccCccccCCCCC
Q 048657 293 VNLESLALSNNNLE--G-HMFSRNFNLANLKLLQLEGNRF-VGEIPQSLSKCSSLEGLHLNNNSL-SGRIPRWLGNLTWL 367 (456)
Q Consensus 293 ~~L~~L~l~~~~~~--~-~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L 367 (456)
+.|+.|+++|++-. . ....-...+|+|.+|++++|.. +......|-+++-|++|.++.|.. .....-.+...++|
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl 365 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSL 365 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcce
Confidence 34555555554311 1 1111112455555555555432 222333444555555555555532 11111234445555
Q ss_pred cEEEcCCCc
Q 048657 368 QYIIMPNNH 376 (456)
Q Consensus 368 ~~L~l~~~~ 376 (456)
..|++-+|-
T Consensus 366 ~yLdv~g~v 374 (419)
T KOG2120|consen 366 VYLDVFGCV 374 (419)
T ss_pred EEEEecccc
Confidence 666655543
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=2e-09 Score=71.34 Aligned_cols=61 Identities=38% Similarity=0.568 Sum_probs=42.7
Q ss_pred CCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCcc
Q 048657 341 SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNI 401 (456)
Q Consensus 341 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 401 (456)
|+|++|++++|.++...++.|.++++|++|++++|.++...+.+|..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777655556677777777777777777766666777777777777777754
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.84 E-value=6.8e-09 Score=98.10 Aligned_cols=186 Identities=34% Similarity=0.482 Sum_probs=136.1
Q ss_pred ccCCccccEEeCCCCccCCCCchhhhccCC-cceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCC
Q 048657 215 IHSHKQLRLLDISTNNFRGHIPVEIGDVLP-SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV 293 (456)
Q Consensus 215 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 293 (456)
+...+.++.+++.++.+. .++..... .. +|+.++++.+.+. .++..+..+++|+.|++++|.+. +++.... ..+
T Consensus 112 ~~~~~~l~~L~l~~n~i~-~i~~~~~~-~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~ 186 (394)
T COG4886 112 LLELTNLTSLDLDNNNIT-DIPPLIGL-LKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLS 186 (394)
T ss_pred hhcccceeEEecCCcccc-cCcccccc-chhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhh-hhh
Confidence 344467888888888877 45544442 43 8889999888876 44456788899999999998887 6665432 577
Q ss_pred cccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcC
Q 048657 294 NLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMP 373 (456)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 373 (456)
.|+.+++++|.+...... ......|+++.+++|... ..+..+..+.++..+.+.+|++. ..+..+..+++++.|+++
T Consensus 187 ~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s 263 (394)
T COG4886 187 NLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLS 263 (394)
T ss_pred hhhheeccCCccccCchh-hhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccc
Confidence 888899999888764432 224556888888888544 45566778888888888888775 446778888889999999
Q ss_pred CCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc
Q 048657 374 NNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH 410 (456)
Q Consensus 374 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 410 (456)
+|.+..... +....+++.++++++.++..++....
T Consensus 264 ~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 264 NNQISSISS--LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred ccccccccc--ccccCccCEEeccCccccccchhhhc
Confidence 998876544 77788899999999888766555544
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.83 E-value=1e-08 Score=101.42 Aligned_cols=107 Identities=33% Similarity=0.523 Sum_probs=77.4
Q ss_pred ccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcC
Q 048657 319 LKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISD 398 (456)
Q Consensus 319 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 398 (456)
++.|+|.++.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 66777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CccCCCCCccccc--ccccEEEccCcccC
Q 048657 399 NNISGSLPACFHP--LSIKQVHLSKNMLH 425 (456)
Q Consensus 399 ~~l~~~~~~~~~~--~~L~~l~l~~~~~~ 425 (456)
|.+++..|..+.. .++..+++.+|...
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 7777666655442 34556677766543
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.83 E-value=1.3e-09 Score=92.26 Aligned_cols=127 Identities=25% Similarity=0.251 Sum_probs=79.0
Q ss_pred CcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEc
Q 048657 293 VNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIM 372 (456)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 372 (456)
..|+++++++|.++... .+..-.|.++.|++++|.+. .+. .+..+++|..|++++|.++ ....+=..+-+++.|.+
T Consensus 284 q~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhhh-hhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 45777777777665422 23334677777777777775 222 2566777777777777665 44444455667777777
Q ss_pred CCCcccccCchhccCCCCCCeEeCcCCccCCCCCcc--cccccccEEEccCcccC
Q 048657 373 PNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPAC--FHPLSIKQVHLSKNMLH 425 (456)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--~~~~~L~~l~l~~~~~~ 425 (456)
.+|.+... ..+..+.+|..|++++|++....... ...+.|+.+.+.+|.+.
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 77766432 44556667777777777765443222 22566777777777774
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.82 E-value=1e-08 Score=101.50 Aligned_cols=108 Identities=29% Similarity=0.426 Sum_probs=94.3
Q ss_pred CCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEcc
Q 048657 342 SLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLS 420 (456)
Q Consensus 342 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~ 420 (456)
.++.|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+++..+..+. +++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 378899999999989999999999999999999999988898999999999999999999988777654 7899999999
Q ss_pred CcccCCCCCcccccCCCcceEEEccCccc
Q 048657 421 KNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449 (456)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 449 (456)
+|.+.+.+|...-....++..+++.+|+.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcc
Confidence 99999999987333345678899998863
No 42
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.81 E-value=2e-10 Score=101.38 Aligned_cols=303 Identities=17% Similarity=0.056 Sum_probs=158.6
Q ss_pred CccEEeccCCC-CCCcccccc-cCCCCCcEEEcccCc-ccccchhhh-hcCCCCcEEeccCC-ccccccCCCCCcCCCCc
Q 048657 21 SLKYLSLSDSN-SSRILDRGL-CSLVHLQELYIDNND-LRGSLPWCL-ANMTSLRILDVSSN-QLTGSISSSPLVHLTSI 95 (456)
Q Consensus 21 ~L~~L~L~~~~-~~~~~~~~l-~~l~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~~-~i~~~~~~~~~~~l~~L 95 (456)
.||.|.++++. ..+-+...+ .++++++.|.+.+|. +++..-..+ ..|++|+++++..| .+|+.........+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 47888888876 444333344 478888888888884 443333333 34788888888885 44422222233457888
Q ss_pred cEEEcCCceeeeccCCC-cccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCC-CCchHHhhcCCCcc
Q 048657 96 EELMLSNNHFQIPISLE-PFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDG-VTFPKFLYHQHDLE 173 (456)
Q Consensus 96 ~~L~l~~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~l~~~~~L~ 173 (456)
++|++++|.-......+ ...++..++.+.+++|.-...- ........+..+..+++..+.... ..+...-..++.|+
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le-~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE-ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH-HHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 88888877533222222 2345556666666654321100 000000111122333332221111 11112223466777
Q ss_pred EEEecCcc-cccccchhhhhccccceeeeecccCcC-CCCCcCc-cCCccccEEeCCCCccC-CCCchhhhccCCcceEE
Q 048657 174 YVDLSHIK-MNGEFPTWLLENNTKLIQLSVVNDSLA-GPFRLPI-HSHKQLRLLDISTNNFR-GHIPVEIGDVLPSLYVF 249 (456)
Q Consensus 174 ~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l-~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~l 249 (456)
.++.+++. +++.....+...+++|+.+.+..|+.- ..-...+ .+++.|+.+++.++... +..-......++.++.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 77777664 444444445567777888877777632 1111122 46677777777776432 11122333446777777
Q ss_pred EccCCccCCCc-----cccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcc-cccccccc-cccccccEE
Q 048657 250 NNSMNALDGSI-----PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL-EGHMFSRN-FNLANLKLL 322 (456)
Q Consensus 250 ~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~-~~~~~L~~L 322 (456)
.+++|...... ...-.....++.+.+.++....+-.-.....+++|+.+++-+|+- +......+ ..+|+++..
T Consensus 378 slshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH 457 (483)
T ss_pred ChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence 77766533111 122234566778888887543233333344678888888887743 33222222 245665554
Q ss_pred Ec
Q 048657 323 QL 324 (456)
Q Consensus 323 ~l 324 (456)
.+
T Consensus 458 a~ 459 (483)
T KOG4341|consen 458 AY 459 (483)
T ss_pred hh
Confidence 33
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.79 E-value=3e-10 Score=104.18 Aligned_cols=171 Identities=29% Similarity=0.419 Sum_probs=123.9
Q ss_pred cEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEcc
Q 048657 222 RLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALS 301 (456)
Q Consensus 222 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~ 301 (456)
...+++.|.+. .+|..+.. +..|..+.+..|.+. .+|..+.++..|+.++++.|+++ ..|..++ ..-|+.+.++
T Consensus 78 ~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvli~s 151 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVLIVS 151 (722)
T ss_pred hhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeEEEe
Confidence 34566667666 56655443 556666666666554 56777778888888888888877 6676665 3447888888
Q ss_pred CCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccC
Q 048657 302 NNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLI 381 (456)
Q Consensus 302 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 381 (456)
+|+++... ..++..+.|..|+.+.|.+. .+|..+..+.+|+.|.++.|.+. .+|+.+. .-.|..||++.|++. .+
T Consensus 152 NNkl~~lp-~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 152 NNKLTSLP-EEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNKIS-YL 226 (722)
T ss_pred cCccccCC-cccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCcee-ec
Confidence 88877543 33446777888888888887 67777888888888888888776 5666666 445788888888887 56
Q ss_pred chhccCCCCCCeEeCcCCccCC
Q 048657 382 PVEFCQLDSLQILDISDNNISG 403 (456)
Q Consensus 382 ~~~~~~~~~L~~L~l~~~~l~~ 403 (456)
|..|..|+.|+.|-|.+|++..
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred chhhhhhhhheeeeeccCCCCC
Confidence 7788888888888888888874
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=5.9e-10 Score=94.22 Aligned_cols=184 Identities=23% Similarity=0.160 Sum_probs=124.2
Q ss_pred CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCc-cCCCCchhhhccCCcceE
Q 048657 170 HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNN-FRGHIPVEIGDVLPSLYV 248 (456)
Q Consensus 170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~ 248 (456)
..++.+|++...++......++..|.+|+.|.+.+......+...++.-..|+.++++.+. ++.....-+...++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3577777777776655555666777888888888777777777777777888888888764 443333445556778888
Q ss_pred EEccCCccCCCccccc--cCCCCCcEEeccCCc--CCCcccchhhcCCCcccEEEccCCc-ccccccccccccccccEEE
Q 048657 249 FNNSMNALDGSIPSSF--GNMKFLQILDLSNNH--LTGEIPEHLAVGCVNLESLALSNNN-LEGHMFSRNFNLANLKLLQ 323 (456)
Q Consensus 249 l~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~--l~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~ 323 (456)
|+++.|.........+ .--++|+.|+++++. +...-......++|++.+|++++|. +....+..+..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 8888876653222211 124678888888873 2222223445689999999998874 4444455566889999999
Q ss_pred ccCcccc-ccccccccCCCCCcEEEcCCCcC
Q 048657 324 LEGNRFV-GEIPQSLSKCSSLEGLHLNNNSL 353 (456)
Q Consensus 324 l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~ 353 (456)
++.|..- ......+...|+|.+|++.+|--
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 9998652 11223456789999999998743
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=1.6e-08 Score=85.69 Aligned_cols=108 Identities=21% Similarity=0.275 Sum_probs=77.6
Q ss_pred ccEEeccCCCCCCcccc-cc-cCCCCCcEEEcccCcccc--cchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccE
Q 048657 22 LKYLSLSDSNSSRILDR-GL-CSLVHLQELYIDNNDLRG--SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE 97 (456)
Q Consensus 22 L~~L~L~~~~~~~~~~~-~l-~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~ 97 (456)
+..|.+.++.++..... .| ..+.++++++|.+|.+++ ....-+.++|.|++|+++.|++.+.|..-. ....+|++
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~ 125 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRV 125 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEE
Confidence 44666666766655532 22 367899999999999873 233445679999999999998886555411 45678999
Q ss_pred EEcCCceeeeccCCCcccccccceEEeccCccc
Q 048657 98 LMLSNNHFQIPISLEPFFNHSRLKFFYAENNQI 130 (456)
Q Consensus 98 L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 130 (456)
|.+.++.+.-......+..+|.++++.++.|.+
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 999988776444445667788999999988854
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=2.7e-08 Score=84.33 Aligned_cols=186 Identities=20% Similarity=0.212 Sum_probs=106.9
Q ss_pred hHHhhcCCCccEEeccCCCCCCccc--ccccCCCCCcEEEcccCcccccchhhh-hcCCCCcEEeccCCccccccCCCCC
Q 048657 13 QIIGESMPSLKYLSLSDSNSSRILD--RGLCSLVHLQELYIDNNDLRGSLPWCL-ANMTSLRILDVSSNQLTGSISSSPL 89 (456)
Q Consensus 13 ~~~~~~~~~L~~L~L~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~i~~~~~~~~~ 89 (456)
+.++..+.+++.+||.+|.+.+... ..+.++|+|+.|+++.|.+. ....++ ....+|++|-+.++.+...-....+
T Consensus 64 ~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~-s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 64 MLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS-SDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred HHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC-CccccCcccccceEEEEEcCCCCChhhhhhhh
Confidence 4466668899999999999776542 23468999999999999886 333333 3567999999999987755555577
Q ss_pred cCCCCccEEEcCCceeee-ccCCC----------cccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCC
Q 048657 90 VHLTSIEELMLSNNHFQI-PISLE----------PFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYED 158 (456)
Q Consensus 90 ~~l~~L~~L~l~~~~~~~-~~~~~----------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 158 (456)
..+|.+++|.++.|.+.- ....+ .++..+.+..++.+.|.+..+.+ ++..+.+-.+...
T Consensus 143 ~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp----------nv~sv~v~e~PlK 212 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP----------NVNSVFVCEGPLK 212 (418)
T ss_pred hcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc----------cchheeeecCccc
Confidence 789999999999884320 01111 12222233333333333322211 2222222122222
Q ss_pred CCCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCC
Q 048657 159 GVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAG 209 (456)
Q Consensus 159 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 209 (456)
..+..+....++.+..|+++.+++.+...-..+..++.|..|.++.++++.
T Consensus 213 ~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 213 TESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred chhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 223333334445555666666665543333334556666666666655544
No 47
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.44 E-value=3.5e-08 Score=97.46 Aligned_cols=161 Identities=21% Similarity=0.301 Sum_probs=114.9
Q ss_pred CCccEEeccCCC-CCCcccccc-cCCCCCcEEEcccCcccc-cchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCcc
Q 048657 20 PSLKYLSLSDSN-SSRILDRGL-CSLVHLQELYIDNNDLRG-SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIE 96 (456)
Q Consensus 20 ~~L~~L~L~~~~-~~~~~~~~l-~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~ 96 (456)
.+|++|++++.. +..-....+ ..+|.|+.|.+.+-.+.. .+..-..++|+|..||+|+++++ .+ ..+.++++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhccccHH
Confidence 479999999866 332222333 468999999999877642 33445567899999999999998 55 3688999999
Q ss_pred EEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEE
Q 048657 97 ELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVD 176 (456)
Q Consensus 97 ~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ 176 (456)
+|.+.+-.+........+..+++|+.||++......... + ...+.+.-..+|+|+.||
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~-----------i-----------i~qYlec~~~LpeLrfLD 256 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK-----------I-----------IEQYLECGMVLPELRFLD 256 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchH-----------H-----------HHHHHHhcccCccccEEe
Confidence 999998777654555678889999999998765432110 0 001112223478999999
Q ss_pred ecCcccccccchhhhhccccceeeeeccc
Q 048657 177 LSHIKMNGEFPTWLLENNTKLIQLSVVND 205 (456)
Q Consensus 177 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 205 (456)
.+++.+...+.+.+....++|+.+.+-.+
T Consensus 257 cSgTdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 257 CSGTDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred cCCcchhHHHHHHHHHhCccHhhhhhhhh
Confidence 99999888888777778888877775543
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.38 E-value=3.4e-08 Score=82.70 Aligned_cols=39 Identities=18% Similarity=0.232 Sum_probs=20.6
Q ss_pred HHhhcCCCccEEeccCCCCCCccccccc----CCCCCcEEEccc
Q 048657 14 IIGESMPSLKYLSLSDSNSSRILDRGLC----SLVHLQELYIDN 53 (456)
Q Consensus 14 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~----~l~~L~~L~l~~ 53 (456)
.+.. +..+..++|++|.+...-++.++ +-++|+..+++.
T Consensus 25 el~~-~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 25 ELEM-MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred HHHh-hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 3444 55666666666665544434333 335555555554
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.38 E-value=5.8e-08 Score=91.89 Aligned_cols=224 Identities=25% Similarity=0.252 Sum_probs=93.8
Q ss_pred cCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcc
Q 048657 216 HSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL 295 (456)
Q Consensus 216 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L 295 (456)
..+.+++.+++..+.+.. +... ...+++|+.++++.|.+... ..+..++.|+.|++.+|.+. .+.... .+..|
T Consensus 92 ~~~~~l~~l~l~~n~i~~-i~~~-l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~-~~~~~~--~l~~L 164 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEK-IENL-LSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS-DISGLE--SLKSL 164 (414)
T ss_pred ccccceeeeeccccchhh-cccc-hhhhhcchheeccccccccc--cchhhccchhhheeccCcch-hccCCc--cchhh
Confidence 344455555555554432 1111 11244555555555544321 12333444555555555544 322211 24455
Q ss_pred cEEEccCCccccccc-ccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCC--CCcEEEc
Q 048657 296 ESLALSNNNLEGHMF-SRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLT--WLQYIIM 372 (456)
Q Consensus 296 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l 372 (456)
+.+++++|++..... . ...+.+++.+.+.+|.+.. ...+..+..+..+++.+|.+... ..+..+. +|+++++
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~--~~l~~~~~~~L~~l~l 239 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKL--EGLNELVMLHLRELYL 239 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceec--cCcccchhHHHHHHhc
Confidence 555555555443222 1 2344555555555555431 12222233333334444444311 1122222 2555666
Q ss_pred CCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCC---CCcccccCCCcceEEEccCccc
Q 048657 373 PNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQ---LKRGTFFNCSSLVTLDLSYNRL 449 (456)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~l 449 (456)
+++.+... +..+..++.+..+++.++++.... .......+..+....+.+... .........+.++.+.+.++++
T Consensus 240 ~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 240 SGNRISRS-PEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred ccCccccc-cccccccccccccchhhccccccc-cccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 65555422 133444555555555555544221 111233344444444443211 0011123345556666666655
Q ss_pred CCCC
Q 048657 450 NGSI 453 (456)
Q Consensus 450 ~~~~ 453 (456)
-...
T Consensus 318 ~~~~ 321 (414)
T KOG0531|consen 318 RKIS 321 (414)
T ss_pred cccc
Confidence 4443
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.28 E-value=1.2e-08 Score=96.57 Aligned_cols=182 Identities=25% Similarity=0.230 Sum_probs=84.1
Q ss_pred CcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCc--cCCCccccccC------CCCCcEEeccCCcCCCc
Q 048657 212 RLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA--LDGSIPSSFGN------MKFLQILDLSNNHLTGE 283 (456)
Q Consensus 212 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~--~~~~~~~~l~~------~~~L~~L~l~~~~l~~~ 283 (456)
+..+..+..|+.|.+.++++.. ...+......|+.|.++..- +...+....+. ...|...+++.|.+. .
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 4445667777777777776652 22222223345554443221 00000000000 112333344444443 2
Q ss_pred ccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccC
Q 048657 284 IPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGN 363 (456)
Q Consensus 284 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 363 (456)
++..+ .-++.++.|++++|++++.. .+..+++|++|+|+.|.+..+.......|. |..|.+++|.++. ...+.+
T Consensus 179 mD~SL-qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~t--L~gie~ 252 (1096)
T KOG1859|consen 179 MDESL-QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTT--LRGIEN 252 (1096)
T ss_pred HHHHH-HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHh--hhhHHh
Confidence 22222 13455666666666655422 344556666666666665522222333344 6666666665542 234556
Q ss_pred CCCCcEEEcCCCccccc-CchhccCCCCCCeEeCcCCccC
Q 048657 364 LTWLQYIIMPNNHLEGL-IPVEFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 364 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~ 402 (456)
+.+|+.||++.|-+.+. -...+..+..|+.|.|.||++.
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 66666666666644321 1122233445666666666554
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.26 E-value=2.3e-07 Score=77.78 Aligned_cols=36 Identities=22% Similarity=0.024 Sum_probs=26.1
Q ss_pred CchHHhhcCCCccEEEecCcccccccchhhhhcccc
Q 048657 161 TFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTK 196 (456)
Q Consensus 161 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 196 (456)
.+.+.+..+..+..+++++|.+..+...++.....+
T Consensus 21 ~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~ 56 (388)
T COG5238 21 GVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIAN 56 (388)
T ss_pred HHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhh
Confidence 345566678889999999999887777776554443
No 52
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.22 E-value=1.4e-07 Score=89.30 Aligned_cols=194 Identities=29% Similarity=0.262 Sum_probs=115.2
Q ss_pred CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657 243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL 322 (456)
Q Consensus 243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 322 (456)
+.++..+++..+.+... ...+..+++|++|++++|.+. .+... ..++.|+.|++.+|.+.+.. .+..+..|+.+
T Consensus 94 ~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~l--~~l~~L~~L~l~~N~i~~~~--~~~~l~~L~~l 167 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEGL--STLTLLKELNLSGNLISDIS--GLESLKSLKLL 167 (414)
T ss_pred ccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccch--hhccchhhheeccCcchhcc--CCccchhhhcc
Confidence 66778888877776532 222566777888888888776 44332 23555777777777776422 23346777777
Q ss_pred EccCcccccccc-ccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCC--CCeEeCcCC
Q 048657 323 QLEGNRFVGEIP-QSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDS--LQILDISDN 399 (456)
Q Consensus 323 ~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~ 399 (456)
++++|.+..... . ...+..++.+.+.+|.+. ..+.+..+..+..+++..|.+...- .+..++. |+.+++++|
T Consensus 168 ~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~--~i~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n 242 (414)
T KOG0531|consen 168 DLSYNRIVDIENDE-LSELISLEELDLGGNSIR--EIEGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGN 242 (414)
T ss_pred cCCcchhhhhhhhh-hhhccchHHHhccCCchh--cccchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccC
Confidence 777777753222 1 466777777777777664 2234445555556677777665432 2222223 777888888
Q ss_pred ccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccC
Q 048657 400 NISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 450 (456)
Q Consensus 400 ~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 450 (456)
++.......-....+..+++.+|.+.. ... +...+.+..+...++++.
T Consensus 243 ~i~~~~~~~~~~~~l~~l~~~~n~~~~-~~~--~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 243 RISRSPEGLENLKNLPVLDLSSNRISN-LEG--LERLPKLSELWLNDNKLA 290 (414)
T ss_pred ccccccccccccccccccchhhccccc-ccc--ccccchHHHhccCcchhc
Confidence 776443233335677777777777632 111 344455555555555543
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.22 E-value=1.4e-08 Score=96.11 Aligned_cols=178 Identities=28% Similarity=0.236 Sum_probs=112.4
Q ss_pred chhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCC----------CcccchhhcCCCcccEEEccCCcc
Q 048657 236 PVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLT----------GEIPEHLAVGCVNLESLALSNNNL 305 (456)
Q Consensus 236 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~----------~~~~~~~~~~~~~L~~L~l~~~~~ 305 (456)
|..++. +.+|+.|.+.++.+.. ......--..|++|...+. +. +++.... ....|.+.+++.|++
T Consensus 102 pi~ifp-F~sLr~LElrg~~L~~-~~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 102 PISIFP-FRSLRVLELRGCDLST-AKGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSP--VWNKLATASFSYNRL 176 (1096)
T ss_pred Cceecc-ccceeeEEecCcchhh-hhhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccch--hhhhHhhhhcchhhH
Confidence 455554 6788888888877642 1111111123444433322 11 0111100 123577777777776
Q ss_pred cccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCc-cccCCCCCcEEEcCCCcccccCchh
Q 048657 306 EGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPR-WLGNLTWLQYIIMPNNHLEGLIPVE 384 (456)
Q Consensus 306 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~ 384 (456)
.. ...++.-++.|+.|+|++|+++.+. .+..|+.|++||+++|.+. .+|. ....|. |..|.+++|.++.. ..
T Consensus 177 ~~-mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~g 249 (1096)
T KOG1859|consen 177 VL-MDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RG 249 (1096)
T ss_pred Hh-HHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hh
Confidence 53 2234445788899999999987432 6778899999999999886 3333 334455 89999999988754 56
Q ss_pred ccCCCCCCeEeCcCCccCCC--CCcccccccccEEEccCcccC
Q 048657 385 FCQLDSLQILDISDNNISGS--LPACFHPLSIKQVHLSKNMLH 425 (456)
Q Consensus 385 ~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~L~~l~l~~~~~~ 425 (456)
++++.+|+-|++++|-+.+. ....+....|+.|.|.||.+.
T Consensus 250 ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 250 IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 77888999999999876532 222344668888888898884
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=4.1e-06 Score=50.58 Aligned_cols=36 Identities=36% Similarity=0.609 Sum_probs=16.4
Q ss_pred CCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657 45 HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81 (456)
Q Consensus 45 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 81 (456)
+|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555554 33334445555555555555444
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=1e-05 Score=48.83 Aligned_cols=38 Identities=26% Similarity=0.398 Sum_probs=32.8
Q ss_pred CCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccc
Q 048657 20 PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRG 58 (456)
Q Consensus 20 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 58 (456)
++|++|++++|.+++++. .++++++|++|++++|++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCCC
Confidence 579999999999999984 69999999999999999883
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.97 E-value=2.2e-05 Score=61.15 Aligned_cols=123 Identities=23% Similarity=0.386 Sum_probs=51.5
Q ss_pred cccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCC
Q 048657 312 RNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSL 391 (456)
Q Consensus 312 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 391 (456)
.|..+.+|+.+.+.+ .+.......|.++++|+.+.+.++ +.......|.++++++.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 344555566666553 233234445666666666666653 4434445566666677777655 3333444566666677
Q ss_pred CeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcce
Q 048657 392 QILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLV 440 (456)
Q Consensus 392 ~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~ 440 (456)
+.+.+..+ +.......+....++.+.+.+ .+ ..++...|.++++|+
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~~l~~i~~~~-~~-~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNCNLKEINIPS-NI-TKIEENAFKNCTKLK 129 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT-T--EEE-TT-B--SS----GGG------
T ss_pred cccccCcc-ccEEchhhhcCCCceEEEECC-Cc-cEECCccccccccCC
Confidence 77776553 433444444433666666665 22 256777777777664
No 57
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.94 E-value=3.8e-05 Score=59.81 Aligned_cols=123 Identities=20% Similarity=0.281 Sum_probs=49.4
Q ss_pred cccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCC
Q 048657 263 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSS 342 (456)
Q Consensus 263 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 342 (456)
.+..+++|+.+.+.+ .+. .+....+..+.+++.+.+.++ +.......+..+++++.+.+.+ .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 345555666666653 333 455555555556666666553 4443444455555666666654 222133345555666
Q ss_pred CcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCC
Q 048657 343 LEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQ 392 (456)
Q Consensus 343 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 392 (456)
++.+++..+ +.......|.++ +++.+.+.+ .+......+|.++++|+
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 666666543 333444455555 666666655 33334455566665553
No 58
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.94 E-value=8.6e-07 Score=86.43 Aligned_cols=114 Identities=23% Similarity=0.129 Sum_probs=56.3
Q ss_pred hccccceeeeecccCcCCC--CCcCccCCccccEEeCCCC-ccCCCCc---hhhhccCCcceEEEccCCc-cCCCccccc
Q 048657 192 ENNTKLIQLSVVNDSLAGP--FRLPIHSHKQLRLLDISTN-NFRGHIP---VEIGDVLPSLYVFNNSMNA-LDGSIPSSF 264 (456)
Q Consensus 192 ~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~-~~~~~~~---~~~~~~~~~L~~l~l~~~~-~~~~~~~~l 264 (456)
..++.|+.+.+..+..... .......++.|+.|+++++ ......+ ......+++++.++++.+. +++.....+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3455566665555533322 2223345566666666552 1111111 2233345566666666655 332222222
Q ss_pred c-CCCCCcEEeccCCc-CCCcccchhhcCCCcccEEEccCCcc
Q 048657 265 G-NMKFLQILDLSNNH-LTGEIPEHLAVGCVNLESLALSNNNL 305 (456)
Q Consensus 265 ~-~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~~ 305 (456)
. .+++|+.|.+.+|. +++.....+...+++|++|++++|..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 2 36666666666554 44444445555566677777766643
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.94 E-value=3.7e-06 Score=83.43 Aligned_cols=135 Identities=21% Similarity=0.219 Sum_probs=72.2
Q ss_pred CCCcEEeccCCc-CCCcccchhhcCCCcccEEEccCCcccccc-cccccccccccEEEccCccccccccccccCCCCCcE
Q 048657 268 KFLQILDLSNNH-LTGEIPEHLAVGCVNLESLALSNNNLEGHM-FSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEG 345 (456)
Q Consensus 268 ~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 345 (456)
.+|++|++++.. +...++......+|+|++|.+.+-.+.... .....++|+|..|++++++++.. .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 345555665542 222333444445666666666665443222 12223566777777777666522 56666777777
Q ss_pred EEcCCCcCcc-ccCccccCCCCCcEEEcCCCccccc------CchhccCCCCCCeEeCcCCccCCC
Q 048657 346 LHLNNNSLSG-RIPRWLGNLTWLQYIIMPNNHLEGL------IPVEFCQLDSLQILDISDNNISGS 404 (456)
Q Consensus 346 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~------~~~~~~~~~~L~~L~l~~~~l~~~ 404 (456)
|.+.+-.+.. .....+.++++|+.||+|....... ...+-..+|.|+.||.++..+...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 7666655542 2223455667777777766543221 112233566777777776555433
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.93 E-value=1.3e-05 Score=64.56 Aligned_cols=105 Identities=24% Similarity=0.333 Sum_probs=75.0
Q ss_pred ccEEeccCCCCCCccccccc-CCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEc
Q 048657 22 LKYLSLSDSNSSRILDRGLC-SLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 100 (456)
Q Consensus 22 L~~L~L~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l 100 (456)
=+.++|++..+..+.. ++ -..+...++|++|.+... ..|..+++|.+|.+++|+|+ .|....-..+++|..|.+
T Consensus 21 e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred ccccccccccccchhh--ccccccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEe
Confidence 3566666665443332 22 235677888888876522 35677888999999999988 777645556788999999
Q ss_pred CCceeeeccCCCcccccccceEEeccCcccc
Q 048657 101 SNNHFQIPISLEPFFNHSRLKFFYAENNQIN 131 (456)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 131 (456)
.+|.+........+..+|+|++|.+-+|...
T Consensus 96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred cCcchhhhhhcchhccCCccceeeecCCchh
Confidence 9888875566778888888888888887664
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.89 E-value=2e-05 Score=63.57 Aligned_cols=109 Identities=18% Similarity=0.255 Sum_probs=86.3
Q ss_pred CCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCC-CCCcCCCCccEE
Q 048657 20 PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISS-SPLVHLTSIEEL 98 (456)
Q Consensus 20 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~~l~~L~~L 98 (456)
.....+||++|.+..++ .|..+++|..|.+.+|.|+...|.--.-+++|++|.+.+|.+- .+.+ +.+..||+|++|
T Consensus 42 d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 35678899999988776 5899999999999999999777766666899999999999876 4332 347789999999
Q ss_pred EcCCceeeec--cCCCcccccccceEEeccCcccc
Q 048657 99 MLSNNHFQIP--ISLEPFFNHSRLKFFYAENNQIN 131 (456)
Q Consensus 99 ~l~~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~ 131 (456)
.+-+|..... .-...++.+|+|+.|+..+-...
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 9999987621 22346678899999998875543
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.88 E-value=4.7e-07 Score=67.84 Aligned_cols=83 Identities=27% Similarity=0.385 Sum_probs=35.5
Q ss_pred ccccEEEccCcccccccccccc-CCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEe
Q 048657 317 ANLKLLQLEGNRFVGEIPQSLS-KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILD 395 (456)
Q Consensus 317 ~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 395 (456)
..|+..++++|.+. ..|..|. ..+..+.|++.+|.+. .+|+.+..++.|+.|+++.|.+. ..|+.+..+.++..|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 34444445554444 2222222 2234444444444444 34444444444444444444444 2233333344444444
Q ss_pred CcCCccC
Q 048657 396 ISDNNIS 402 (456)
Q Consensus 396 l~~~~l~ 402 (456)
.-+|...
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 4444443
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.78 E-value=9.8e-07 Score=66.20 Aligned_cols=90 Identities=14% Similarity=0.269 Sum_probs=42.6
Q ss_pred CCCCCcEEEcCCCcCccccCcccc-CCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEE
Q 048657 339 KCSSLEGLHLNNNSLSGRIPRWLG-NLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQV 417 (456)
Q Consensus 339 ~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l 417 (456)
....|+..++++|.+. ..|..|. ..+..+.+++.+|.+... |..+..++.|+.|+++.|++...+...+...++-+|
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdv-PeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDV-PEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhc-hHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 3444555555555554 2222222 334555555555555533 233555555555555555554433333334445555
Q ss_pred EccCcccCCCCCcc
Q 048657 418 HLSKNMLHGQLKRG 431 (456)
Q Consensus 418 ~l~~~~~~~~~~~~ 431 (456)
+..+|... .++..
T Consensus 129 ds~~na~~-eid~d 141 (177)
T KOG4579|consen 129 DSPENARA-EIDVD 141 (177)
T ss_pred cCCCCccc-cCcHH
Confidence 55555553 44444
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=0.00021 Score=65.59 Aligned_cols=54 Identities=15% Similarity=0.115 Sum_probs=26.9
Q ss_pred CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCC
Q 048657 243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNN 303 (456)
Q Consensus 243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 303 (456)
+.++..|+++.|.+. .+|. -.++|+.|.+++|.--..+|..+ .++|++|.+++|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence 456666666666544 2331 12346666666543211333322 245666666665
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.71 E-value=0.00029 Score=64.69 Aligned_cols=32 Identities=31% Similarity=0.240 Sum_probs=14.5
Q ss_pred CCCcEEEcCCCcCccccCccccCCCCCcEEEcCCC
Q 048657 341 SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN 375 (456)
Q Consensus 341 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 375 (456)
++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 34555555555433 2232222 35555555443
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.55 E-value=7.6e-06 Score=79.79 Aligned_cols=35 Identities=31% Similarity=0.251 Sum_probs=15.0
Q ss_pred CCCccEEeccCCC-CCCcc-cccccCCCCCcEEEccc
Q 048657 19 MPSLKYLSLSDSN-SSRIL-DRGLCSLVHLQELYIDN 53 (456)
Q Consensus 19 ~~~L~~L~L~~~~-~~~~~-~~~l~~l~~L~~L~l~~ 53 (456)
+++|+.|.+.++. +++.. ......+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 4555555555443 33211 11233445555555544
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=4.2e-06 Score=70.66 Aligned_cols=57 Identities=19% Similarity=0.100 Sum_probs=34.1
Q ss_pred CccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657 21 SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81 (456)
Q Consensus 21 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 81 (456)
+.++|+.++|.++++. ...+++.|++|.|+-|+|+.. +.+..|++|+.|.|..|.|.
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc
Confidence 5667777777766664 345667777777776666522 33445555555555555544
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.26 E-value=5.8e-05 Score=63.61 Aligned_cols=88 Identities=22% Similarity=0.245 Sum_probs=56.4
Q ss_pred cCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCC--ccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccc
Q 048657 41 CSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSN--QLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHS 118 (456)
Q Consensus 41 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 118 (456)
..+..|+.|++.+++++.. ..+..+++|+.|.++.| .+.+.+.. ...++|+|+++++++|++........+..+.
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhc
Confidence 3556667777777666522 34556677888888877 55544443 4455678888888888776544555666667
Q ss_pred cceEEeccCcccc
Q 048657 119 RLKFFYAENNQIN 131 (456)
Q Consensus 119 ~L~~l~l~~~~~~ 131 (456)
+|..|++.+|...
T Consensus 117 nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 117 NLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcc
Confidence 7777777766543
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.17 E-value=9.7e-05 Score=62.29 Aligned_cols=104 Identities=22% Similarity=0.335 Sum_probs=73.7
Q ss_pred CCCccEEeccCCCCCCcccccccCCCCCcEEEcccC--cccccchhhhhcCCCCcEEeccCCccccccCC-CCCcCCCCc
Q 048657 19 MPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNN--DLRGSLPWCLANMTSLRILDVSSNQLTGSISS-SPLVHLTSI 95 (456)
Q Consensus 19 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~-~~~~~l~~L 95 (456)
+..|+.|++.+..++.+- .|..+++|++|.++.| ++.+.++--...+|+|+++++++|++. .+.. ..+..+.+|
T Consensus 42 ~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-DLSTLRPLKELENL 118 (260)
T ss_pred ccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-cccccchhhhhcch
Confidence 677888888877766554 5788999999999999 666566666667799999999999987 2221 235667788
Q ss_pred cEEEcCCceeeeccC--CCcccccccceEEec
Q 048657 96 EELMLSNNHFQIPIS--LEPFFNHSRLKFFYA 125 (456)
Q Consensus 96 ~~L~l~~~~~~~~~~--~~~~~~~~~L~~l~l 125 (456)
..|++..|....... -..+.-+++|++++-
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 899998886552111 123344667776654
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=5.7e-05 Score=64.07 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=26.6
Q ss_pred CCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657 342 SLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 342 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 402 (456)
+.+.|++.+|+++++ .....++.|+.|.|+-|.|+.. ..+..|++|+.|+|+.|.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc
Confidence 444555555555432 1223444555555555555432 23444555555555555443
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.49 E-value=0.0075 Score=27.81 Aligned_cols=17 Identities=65% Similarity=0.880 Sum_probs=8.4
Q ss_pred CcceEEEccCcccCCCCC
Q 048657 437 SSLVTLDLSYNRLNGSIP 454 (456)
Q Consensus 437 ~~L~~L~l~~~~l~~~~p 454 (456)
++|+.|++++|+++ ++|
T Consensus 1 ~~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp TT-SEEEETSS--S-SE-
T ss_pred CccCEEECCCCCCC-CCc
Confidence 45677777777765 444
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.46 E-value=0.0048 Score=30.74 Aligned_cols=18 Identities=56% Similarity=0.586 Sum_probs=12.3
Q ss_pred cceEEEccCcccCCCCCCC
Q 048657 438 SLVTLDLSYNRLNGSIPDW 456 (456)
Q Consensus 438 ~L~~L~l~~~~l~~~~p~~ 456 (456)
+|+.|++++|+++ +||++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp TESEEEETSSEES-EEGTT
T ss_pred CccEEECCCCcCE-eCChh
Confidence 4677777777777 66653
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.80 E-value=0.0085 Score=48.82 Aligned_cols=83 Identities=22% Similarity=0.126 Sum_probs=55.9
Q ss_pred CccEEeccCCCCCCcccccccCCCCCcEEEcccCcc-cccchhhhh-cCCCCcEEeccCC-ccccccCCCCCcCCCCccE
Q 048657 21 SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDL-RGSLPWCLA-NMTSLRILDVSSN-QLTGSISSSPLVHLTSIEE 97 (456)
Q Consensus 21 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~-~l~~L~~L~l~~~-~i~~~~~~~~~~~l~~L~~ 97 (456)
.++.+|=+++++..+..+.+.+++.++.|.+.+|.- .+---+.+. -.++|+.|++++| +|| +-.-..+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhHH
Confidence 367777777777777667778888888888888853 211111222 2489999999988 466 333235667888888
Q ss_pred EEcCCce
Q 048657 98 LMLSNNH 104 (456)
Q Consensus 98 L~l~~~~ 104 (456)
|.+.+-+
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 8887643
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.68 E-value=0.018 Score=28.68 Aligned_cols=12 Identities=58% Similarity=0.772 Sum_probs=4.9
Q ss_pred CcEEeccCCccc
Q 048657 70 LRILDVSSNQLT 81 (456)
Q Consensus 70 L~~L~l~~~~i~ 81 (456)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444443
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.95 E-value=0.0069 Score=49.34 Aligned_cols=84 Identities=19% Similarity=0.161 Sum_probs=47.7
Q ss_pred CCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCc-hhc-cCCCCCCeEeCcCC-ccCCCCCcccc-cccccE
Q 048657 341 SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIP-VEF-CQLDSLQILDISDN-NISGSLPACFH-PLSIKQ 416 (456)
Q Consensus 341 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~-~l~~~~~~~~~-~~~L~~ 416 (456)
..++.++-+++.+..+..+.+..++.++.|.+.+|.--+-.. ..+ ...++|+.|++++| +||+-....+. .++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 346677777777776666777777777777777774321100 011 13457777777776 35543333322 556666
Q ss_pred EEccCccc
Q 048657 417 VHLSKNML 424 (456)
Q Consensus 417 l~l~~~~~ 424 (456)
|.+.+-+.
T Consensus 181 L~l~~l~~ 188 (221)
T KOG3864|consen 181 LHLYDLPY 188 (221)
T ss_pred HHhcCchh
Confidence 66655443
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.51 E-value=0.00092 Score=63.75 Aligned_cols=85 Identities=25% Similarity=0.271 Sum_probs=38.6
Q ss_pred CCCCcEEEcCCCcCccc----cCccccCCCC-CcEEEcCCCcccccC----chhccCC-CCCCeEeCcCCccCCCCCccc
Q 048657 340 CSSLEGLHLNNNSLSGR----IPRWLGNLTW-LQYIIMPNNHLEGLI----PVEFCQL-DSLQILDISDNNISGSLPACF 409 (456)
Q Consensus 340 l~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~~~~~~~~----~~~~~~~-~~L~~L~l~~~~l~~~~~~~~ 409 (456)
..++++|++.+|.++.. ....+...++ ++++++..|.+.+.. ...+..+ +.++.++++.|.++.......
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 44555555555554421 1223333344 445555555554321 1222233 445556666665554433332
Q ss_pred c-----cccccEEEccCccc
Q 048657 410 H-----PLSIKQVHLSKNML 424 (456)
Q Consensus 410 ~-----~~~L~~l~l~~~~~ 424 (456)
. ++.++++.+..|++
T Consensus 283 ~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHhhhHHHHHhhcccCcc
Confidence 2 33555555555544
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.88 E-value=0.085 Score=26.80 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=8.5
Q ss_pred CCCcEEEcccCcccccch
Q 048657 44 VHLQELYIDNNDLRGSLP 61 (456)
Q Consensus 44 ~~L~~L~l~~~~~~~~~~ 61 (456)
++|++|++++|++++...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 455666666665554333
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.51 E-value=0.16 Score=26.31 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=11.7
Q ss_pred CCccEEeccCCCCCCcccccc
Q 048657 20 PSLKYLSLSDSNSSRILDRGL 40 (456)
Q Consensus 20 ~~L~~L~L~~~~~~~~~~~~l 40 (456)
++|++|+|++|.++.++...|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666555554443
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.51 E-value=0.16 Score=26.31 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=11.7
Q ss_pred CCccEEeccCCCCCCcccccc
Q 048657 20 PSLKYLSLSDSNSSRILDRGL 40 (456)
Q Consensus 20 ~~L~~L~L~~~~~~~~~~~~l 40 (456)
++|++|+|++|.++.++...|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666555554443
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.92 E-value=0.0032 Score=60.17 Aligned_cols=185 Identities=22% Similarity=0.177 Sum_probs=107.4
Q ss_pred cCCccccEEeCCCCccCCCCchhhhccC----CcceEEEccCCccCC----CccccccCCCCCcEEeccCCcCCCcc---
Q 048657 216 HSHKQLRLLDISTNNFRGHIPVEIGDVL----PSLYVFNNSMNALDG----SIPSSFGNMKFLQILDLSNNHLTGEI--- 284 (456)
Q Consensus 216 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~L~~l~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~--- 284 (456)
...+.|..|++++|.+.+.....+...+ ..++++.+..|.++. .+...+.....++.++++.|.+....
T Consensus 112 ~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~ 191 (478)
T KOG4308|consen 112 KTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLV 191 (478)
T ss_pred cccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHH
Confidence 4445566666666665532222222111 245556666665553 34445566777888888877653111
Q ss_pred -cchhh---cCCCcccEEEccCCccccccc----cccccccc-ccEEEccCcccccc----ccccccCC-CCCcEEEcCC
Q 048657 285 -PEHLA---VGCVNLESLALSNNNLEGHMF----SRNFNLAN-LKLLQLEGNRFVGE----IPQSLSKC-SSLEGLHLNN 350 (456)
Q Consensus 285 -~~~~~---~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~-L~~L~l~~~~~~~~----~~~~~~~l-~~L~~L~l~~ 350 (456)
+.... ....+++++.+..|.++.... ..+...++ +..++++.|.+.+. ....+..+ +.++.++++.
T Consensus 192 l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ 271 (478)
T KOG4308|consen 192 LSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSR 271 (478)
T ss_pred HhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhc
Confidence 11111 135668888888888764222 22233444 66788888887643 23344455 6778999999
Q ss_pred CcCccc----cCccccCCCCCcEEEcCCCcccccCc----hhccCCCCCCeEeCcCCc
Q 048657 351 NSLSGR----IPRWLGNLTWLQYIIMPNNHLEGLIP----VEFCQLDSLQILDISDNN 400 (456)
Q Consensus 351 ~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~ 400 (456)
|.+++. +.+.+..++.++++.+++|.+..... .....-..+..+.+.++.
T Consensus 272 nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~ 329 (478)
T KOG4308|consen 272 NSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTG 329 (478)
T ss_pred CCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccC
Confidence 988754 34455678889999999988864322 233344456666666543
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.63 E-value=0.43 Score=24.67 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=6.4
Q ss_pred CCcEEEcCCCcccc
Q 048657 366 WLQYIIMPNNHLEG 379 (456)
Q Consensus 366 ~L~~L~l~~~~~~~ 379 (456)
+|+.|++++|++..
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00369 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 44444444444443
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.63 E-value=0.43 Score=24.67 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=6.4
Q ss_pred CCcEEEcCCCcccc
Q 048657 366 WLQYIIMPNNHLEG 379 (456)
Q Consensus 366 ~L~~L~l~~~~~~~ 379 (456)
+|+.|++++|++..
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00370 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 44444444444443
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.90 E-value=0.021 Score=47.62 Aligned_cols=86 Identities=13% Similarity=0.088 Sum_probs=42.6
Q ss_pred HHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCC
Q 048657 14 IIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLT 93 (456)
Q Consensus 14 ~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~ 93 (456)
+++. +...+.||++.+..-.+. ..|+.+..+..|+++.+.+. .+|..+.....+++++...|..+ ..|. .....+
T Consensus 37 ei~~-~kr~tvld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~~ 111 (326)
T KOG0473|consen 37 EIAS-FKRVTVLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQKKEP 111 (326)
T ss_pred hhhc-cceeeeehhhhhHHHhhc-cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-cccccC
Confidence 3444 455555555554433333 23444455555555555554 45555555555555555555544 4444 444555
Q ss_pred CccEEEcCCce
Q 048657 94 SIEELMLSNNH 104 (456)
Q Consensus 94 ~L~~L~l~~~~ 104 (456)
.++++++..+.
T Consensus 112 ~~k~~e~k~~~ 122 (326)
T KOG0473|consen 112 HPKKNEQKKTE 122 (326)
T ss_pred CcchhhhccCc
Confidence 55555555444
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.89 E-value=0.44 Score=24.65 Aligned_cols=18 Identities=44% Similarity=0.717 Sum_probs=12.4
Q ss_pred CcceEEEccCcccCCCCCC
Q 048657 437 SSLVTLDLSYNRLNGSIPD 455 (456)
Q Consensus 437 ~~L~~L~l~~~~l~~~~p~ 455 (456)
++|+.|++++|+++ ++|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 45677777777776 6664
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=82.35 E-value=0.59 Score=24.22 Aligned_cols=13 Identities=38% Similarity=0.590 Sum_probs=6.7
Q ss_pred CCCccEEeccCCC
Q 048657 19 MPSLKYLSLSDSN 31 (456)
Q Consensus 19 ~~~L~~L~L~~~~ 31 (456)
|++|++|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3455555555554
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.03 E-value=0.033 Score=46.57 Aligned_cols=83 Identities=17% Similarity=0.088 Sum_probs=36.7
Q ss_pred CCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEE
Q 048657 292 CVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYII 371 (456)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 371 (456)
+...+.|+++.+++.... ..+.-+..+..++++.+.+. ..|..+.+...+..++..+|... ..|..+...++++.++
T Consensus 41 ~kr~tvld~~s~r~vn~~-~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLG-KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHhhc-cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 344455555544433211 11222334444445444443 34444444444444444444443 4444444555555555
Q ss_pred cCCCcc
Q 048657 372 MPNNHL 377 (456)
Q Consensus 372 l~~~~~ 377 (456)
..++.+
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 544443
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.70 E-value=1.6 Score=22.71 Aligned_cols=14 Identities=43% Similarity=0.624 Sum_probs=8.2
Q ss_pred CCCcEEeccCCccc
Q 048657 68 TSLRILDVSSNQLT 81 (456)
Q Consensus 68 ~~L~~L~l~~~~i~ 81 (456)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45566666666554
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.11 E-value=1.3 Score=23.47 Aligned_cols=14 Identities=36% Similarity=0.449 Sum_probs=6.9
Q ss_pred CccEEeccCCCCCC
Q 048657 21 SLKYLSLSDSNSSR 34 (456)
Q Consensus 21 ~L~~L~L~~~~~~~ 34 (456)
+|++|+|++|.+++
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45555555554443
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.78 E-value=4 Score=39.19 Aligned_cols=82 Identities=23% Similarity=0.179 Sum_probs=53.3
Q ss_pred cCCCCCcEEEcCCCcccccC--chhccCCCCCCeEeCcCC--ccCCC-CCcccccccccEEEccCcccCCCCCcc-----
Q 048657 362 GNLTWLQYIIMPNNHLEGLI--PVEFCQLDSLQILDISDN--NISGS-LPACFHPLSIKQVHLSKNMLHGQLKRG----- 431 (456)
Q Consensus 362 ~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~--~l~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~----- 431 (456)
.+.+.+..+.+++|++.... ...-...|+|+.|+|++| .+... ...-+....|++|-+.||++.+.....
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~ 294 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS 294 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence 45677888999999875431 122345689999999999 33211 111223567899999999997665543
Q ss_pred -cccCCCcceEEE
Q 048657 432 -TFFNCSSLVTLD 443 (456)
Q Consensus 432 -~~~~~~~L~~L~ 443 (456)
+-..+|.|..||
T Consensus 295 ~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 295 AIRELFPKLLRLD 307 (585)
T ss_pred HHHHhcchheeec
Confidence 123578777664
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.39 E-value=5.3 Score=38.45 Aligned_cols=64 Identities=20% Similarity=0.135 Sum_probs=35.4
Q ss_pred ccccccEEEccCccccccc--cccccCCCCCcEEEcCCCcCccccCccccC--CCCCcEEEcCCCccc
Q 048657 315 NLANLKLLQLEGNRFVGEI--PQSLSKCSSLEGLHLNNNSLSGRIPRWLGN--LTWLQYIIMPNNHLE 378 (456)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~ 378 (456)
+.+.+..+.+++|++.... ..--..-|+|..|++++|...-.....+.. ..-|++|.+.||++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 5677778888888775321 111123477888888887211111112222 344677777777764
No 91
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=33.93 E-value=55 Score=27.57 Aligned_cols=12 Identities=8% Similarity=0.003 Sum_probs=5.7
Q ss_pred CCcEEEcCCCcc
Q 048657 366 WLQYIIMPNNHL 377 (456)
Q Consensus 366 ~L~~L~l~~~~~ 377 (456)
+|+--.+.++.+
T Consensus 217 NLeganLkG~~~ 228 (302)
T KOG1665|consen 217 NLEGANLKGADM 228 (302)
T ss_pred cccccccccccc
Confidence 444444444444
No 92
>PRK09718 hypothetical protein; Validated
Probab=28.78 E-value=99 Score=29.78 Aligned_cols=30 Identities=10% Similarity=0.251 Sum_probs=15.1
Q ss_pred CeEeCcCCccCCCCCcccccccccEEEccCccc
Q 048657 392 QILDISDNNISGSLPACFHPLSIKQVHLSKNML 424 (456)
Q Consensus 392 ~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~ 424 (456)
+...+.+|.+++ ..+.-..|+..|++.|.+
T Consensus 211 Kka~F~~cDLt~---AdF~qT~LkgVDFSdC~L 240 (512)
T PRK09718 211 KEISFIKSNLTA---VMFDHVRISTGNFKDCIT 240 (512)
T ss_pred CCCEEeCCCCCC---CCcCCCcCCCcccccccc
Confidence 444455554442 222344566666666665
No 93
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=28.00 E-value=85 Score=30.09 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=7.6
Q ss_pred cccEEEccCcccCC
Q 048657 413 SIKQVHLSKNMLHG 426 (456)
Q Consensus 413 ~L~~l~l~~~~~~~ 426 (456)
.+++|++++|..-+
T Consensus 355 R~q~l~~rdnnldg 368 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDG 368 (553)
T ss_pred eeeEeecccccccc
Confidence 35566666555533
No 94
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=26.92 E-value=97 Score=18.31 Aligned_cols=7 Identities=43% Similarity=0.339 Sum_probs=2.9
Q ss_pred CCCeEeC
Q 048657 390 SLQILDI 396 (456)
Q Consensus 390 ~L~~L~l 396 (456)
++++|.+
T Consensus 13 ~l~~L~~ 19 (44)
T PF05725_consen 13 SLKSLIF 19 (44)
T ss_pred CCeEEEE
Confidence 3444444
No 95
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=21.96 E-value=1.1e+02 Score=25.80 Aligned_cols=13 Identities=0% Similarity=-0.128 Sum_probs=5.7
Q ss_pred CCCcEEEcCCCcc
Q 048657 365 TWLQYIIMPNNHL 377 (456)
Q Consensus 365 ~~L~~L~l~~~~~ 377 (456)
.+++--.+.+|.+
T Consensus 196 aN~eGA~L~gcNf 208 (302)
T KOG1665|consen 196 ANAEGASLKGCNF 208 (302)
T ss_pred cccccccccCcCC
Confidence 3344444444444
Done!