Query 048657
Match_columns 456
No_of_seqs 183 out of 2858
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 20:32:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 9.9E-49 3.4E-53 398.2 32.9 439 3-455 186-722 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.1E-47 7.3E-52 388.4 38.0 440 2-455 158-698 (768)
3 3t6q_A CD180 antigen; protein- 100.0 5.9E-46 2E-50 369.8 32.5 441 2-451 40-561 (606)
4 3t6q_A CD180 antigen; protein- 100.0 8.3E-45 2.8E-49 361.6 37.4 434 10-455 26-518 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 7.1E-45 2.4E-49 362.0 30.4 438 2-454 39-562 (606)
6 1ziw_A TOLL-like receptor 3; i 100.0 2.9E-43 9.8E-48 355.1 37.3 207 246-453 383-600 (680)
7 1ziw_A TOLL-like receptor 3; i 100.0 3E-42 1E-46 347.7 39.0 445 3-454 33-576 (680)
8 2z63_A TOLL-like receptor 4, v 100.0 8.4E-43 2.9E-47 344.9 33.3 440 3-455 36-536 (570)
9 3vq2_A TLR4, TOLL-like recepto 100.0 2.4E-42 8.2E-47 343.8 30.9 415 2-430 63-563 (606)
10 3j0a_A TOLL-like receptor 5; m 100.0 2.4E-42 8.2E-47 354.8 26.1 439 3-451 32-561 (844)
11 2z81_A CD282 antigen, TOLL-lik 100.0 5E-41 1.7E-45 330.5 28.0 434 3-454 34-514 (549)
12 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-41 4.1E-46 332.4 23.3 429 2-453 7-484 (520)
13 2z63_A TOLL-like receptor 4, v 100.0 2.7E-40 9.1E-45 327.0 31.8 417 20-455 28-512 (570)
14 4eco_A Uncharacterized protein 100.0 6.6E-41 2.2E-45 333.1 26.2 409 2-425 88-600 (636)
15 3j0a_A TOLL-like receptor 5; m 100.0 6.7E-40 2.3E-44 336.7 28.9 419 3-429 56-564 (844)
16 4ecn_A Leucine-rich repeat pro 100.0 5.6E-40 1.9E-44 331.6 24.5 408 2-425 330-840 (876)
17 4eco_A Uncharacterized protein 100.0 5.8E-39 2E-43 319.2 29.2 357 77-450 192-600 (636)
18 3v47_A TOLL-like receptor 5B a 100.0 6.8E-38 2.3E-42 300.9 32.0 386 23-455 13-413 (455)
19 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.3E-39 1.1E-43 317.7 22.9 433 2-454 38-514 (562)
20 4ecn_A Leucine-rich repeat pro 100.0 8.6E-38 2.9E-42 315.7 31.5 414 20-451 323-841 (876)
21 2z81_A CD282 antigen, TOLL-lik 100.0 4.6E-38 1.6E-42 309.3 28.4 396 20-455 26-491 (549)
22 2z7x_B TOLL-like receptor 1, v 100.0 2E-37 6.8E-42 302.6 27.0 411 2-429 28-485 (520)
23 4g8a_A TOLL-like receptor 4; l 100.0 4.6E-36 1.6E-40 300.7 32.0 436 2-451 59-581 (635)
24 3v47_A TOLL-like receptor 5B a 100.0 2.7E-35 9.1E-40 282.8 30.2 357 19-404 29-410 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.9E-35 6.6E-40 290.8 26.4 411 2-429 59-514 (562)
26 1o6v_A Internalin A; bacterial 100.0 3.3E-34 1.1E-38 275.4 33.9 345 19-426 45-389 (466)
27 4g8a_A TOLL-like receptor 4; l 100.0 7.5E-34 2.6E-38 284.6 32.5 430 10-455 45-560 (635)
28 1jl5_A Outer protein YOPM; leu 100.0 4.8E-34 1.6E-38 271.7 25.2 378 19-456 10-417 (454)
29 1o6v_A Internalin A; bacterial 100.0 1.2E-32 4.1E-37 264.5 33.4 339 3-406 54-392 (466)
30 2id5_A Lingo-1, leucine rich r 100.0 1.1E-33 3.6E-38 273.1 23.1 320 23-402 14-333 (477)
31 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-33 4.1E-38 269.1 23.1 356 9-445 32-407 (457)
32 4fmz_A Internalin; leucine ric 100.0 4.7E-32 1.6E-36 250.7 29.7 151 264-424 195-345 (347)
33 3o6n_A APL1; leucine-rich repe 100.0 7.4E-32 2.5E-36 253.2 24.4 309 42-425 43-352 (390)
34 2id5_A Lingo-1, leucine rich r 100.0 1.4E-31 4.7E-36 258.4 26.7 320 46-425 13-333 (477)
35 1jl5_A Outer protein YOPM; leu 100.0 9.5E-32 3.2E-36 255.8 24.8 388 2-456 18-435 (454)
36 4fmz_A Internalin; leucine ric 100.0 2.1E-30 7.3E-35 239.5 29.7 307 39-450 39-346 (347)
37 3bz5_A Internalin-J, INLJ; leu 100.0 5.1E-31 1.7E-35 251.0 25.4 339 2-410 49-395 (457)
38 3o6n_A APL1; leucine-rich repe 100.0 2.4E-30 8.1E-35 243.0 27.4 311 66-451 43-353 (390)
39 3oja_B Anopheles plasmodium-re 100.0 6.8E-31 2.3E-35 259.8 24.4 309 42-425 49-358 (597)
40 3oja_B Anopheles plasmodium-re 100.0 2.4E-29 8.1E-34 248.7 27.4 311 66-451 49-359 (597)
41 1z7x_W Ribonuclease inhibitor; 100.0 2.7E-33 9.1E-38 269.4 -2.4 361 19-424 2-410 (461)
42 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-32 3.6E-37 265.2 0.7 350 3-378 11-411 (461)
43 2ft3_A Biglycan; proteoglycan, 100.0 1.7E-28 5.7E-33 225.1 23.2 302 9-400 17-331 (332)
44 1xku_A Decorin; proteoglycan, 100.0 1.4E-27 4.7E-32 218.8 26.5 81 21-105 32-112 (330)
45 3ogk_B Coronatine-insensitive 100.0 8.3E-31 2.8E-35 260.1 4.5 430 12-446 65-547 (592)
46 1ogq_A PGIP-2, polygalacturona 100.0 5.6E-29 1.9E-33 225.8 16.0 251 196-452 51-307 (313)
47 3ogk_B Coronatine-insensitive 100.0 1.2E-30 4.1E-35 259.0 5.3 403 12-422 104-548 (592)
48 1xku_A Decorin; proteoglycan, 100.0 2.2E-27 7.5E-32 217.5 26.0 270 170-448 52-330 (330)
49 1ogq_A PGIP-2, polygalacturona 100.0 1.5E-28 5.2E-33 222.9 17.3 234 219-456 50-287 (313)
50 2ft3_A Biglycan; proteoglycan, 100.0 1.6E-27 5.6E-32 218.5 22.4 287 45-423 34-331 (332)
51 2p1m_B Transport inhibitor res 99.9 3.3E-30 1.1E-34 255.9 -4.2 429 11-447 57-541 (594)
52 2p1m_B Transport inhibitor res 99.9 5.4E-29 1.8E-33 247.2 -2.8 421 23-450 46-519 (594)
53 2z66_A Variable lymphocyte rec 99.9 2E-25 6.9E-30 202.2 20.8 228 195-425 28-261 (306)
54 2z80_A TOLL-like receptor 2, v 99.9 4E-25 1.4E-29 204.4 19.6 167 215-403 145-315 (353)
55 2z66_A Variable lymphocyte rec 99.9 1.4E-25 4.9E-30 203.2 16.0 230 219-452 28-263 (306)
56 2z80_A TOLL-like receptor 2, v 99.9 6E-26 2E-30 209.9 13.7 277 171-454 32-318 (353)
57 4fcg_A Uncharacterized protein 99.9 6.9E-25 2.4E-29 200.0 19.2 224 219-450 81-314 (328)
58 1ozn_A Reticulon 4 receptor; N 99.9 4.6E-25 1.6E-29 197.7 16.1 251 194-447 31-284 (285)
59 1ozn_A Reticulon 4 receptor; N 99.9 2E-24 6.9E-29 193.5 20.1 204 245-450 33-238 (285)
60 3zyj_A Leucine-rich repeat-con 99.9 4.4E-24 1.5E-28 203.4 23.4 226 219-449 64-291 (440)
61 3zyi_A Leucine-rich repeat-con 99.9 7.3E-24 2.5E-28 202.6 22.9 227 219-450 75-303 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 1.2E-23 4E-28 200.4 23.0 229 170-402 64-292 (440)
63 2z62_A TOLL-like receptor 4, v 99.9 8.9E-24 3E-28 188.3 20.1 209 244-454 28-241 (276)
64 1wwl_A Monocyte differentiatio 99.9 2E-25 6.9E-30 202.4 8.9 248 193-451 41-310 (312)
65 3zyi_A Leucine-rich repeat-con 99.9 1.7E-23 5.7E-28 200.1 22.5 229 170-402 75-303 (452)
66 4fcg_A Uncharacterized protein 99.9 1.3E-23 4.5E-28 191.5 20.4 204 216-424 101-313 (328)
67 3o53_A Protein LRIM1, AGAP0063 99.9 4.2E-25 1.4E-29 200.8 8.4 238 193-445 32-270 (317)
68 3o53_A Protein LRIM1, AGAP0063 99.9 9.9E-25 3.4E-29 198.3 10.5 224 215-454 30-255 (317)
69 3g06_A SSPH2 (leucine-rich rep 99.9 7.8E-23 2.7E-27 200.3 23.7 265 21-386 41-305 (622)
70 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-22 5.1E-27 198.3 24.6 241 170-454 61-301 (622)
71 3oja_A Leucine-rich immune mol 99.9 7.7E-24 2.6E-28 203.4 11.9 238 193-445 32-270 (487)
72 2o6q_A Variable lymphocyte rec 99.9 5.4E-22 1.8E-26 176.0 21.4 201 220-425 17-218 (270)
73 1wwl_A Monocyte differentiatio 99.9 2E-23 6.9E-28 189.3 11.6 225 172-402 65-309 (312)
74 3rfs_A Internalin B, repeat mo 99.9 1E-22 3.6E-27 180.7 15.8 204 216-431 38-241 (272)
75 3oja_A Leucine-rich immune mol 99.9 5.2E-23 1.8E-27 197.6 12.9 234 170-420 34-270 (487)
76 2o6q_A Variable lymphocyte rec 99.9 1.7E-21 5.9E-26 172.7 21.3 204 196-404 17-220 (270)
77 1p9a_G Platelet glycoprotein I 99.9 3.6E-21 1.2E-25 172.1 19.9 201 216-424 7-207 (290)
78 1p9a_G Platelet glycoprotein I 99.9 5.8E-21 2E-25 170.7 20.8 199 243-450 9-208 (290)
79 3rfs_A Internalin B, repeat mo 99.9 3.9E-21 1.3E-25 170.5 16.6 201 243-456 40-241 (272)
80 2z62_A TOLL-like receptor 4, v 99.9 7.9E-21 2.7E-25 169.2 18.4 203 220-425 29-237 (276)
81 3m19_A Variable lymphocyte rec 99.9 8.3E-21 2.9E-25 166.4 16.2 178 270-452 16-194 (251)
82 4glp_A Monocyte differentiatio 99.9 2.3E-21 7.7E-26 175.7 12.6 226 220-451 65-308 (310)
83 2ast_B S-phase kinase-associat 99.9 2.2E-22 7.4E-27 184.9 5.2 255 170-431 47-312 (336)
84 2ca6_A RAN GTPase-activating p 99.8 2.3E-22 7.7E-27 188.3 3.5 136 317-452 159-318 (386)
85 1h6u_A Internalin H; cell adhe 99.8 4.8E-20 1.6E-24 166.4 18.5 194 215-425 37-230 (308)
86 2xwt_C Thyrotropin receptor; s 99.8 1.5E-20 5.2E-25 163.5 14.2 198 243-448 30-237 (239)
87 3goz_A Leucine-rich repeat-con 99.8 9.8E-22 3.4E-26 182.0 6.9 250 175-425 3-297 (362)
88 4glp_A Monocyte differentiatio 99.8 2E-20 6.7E-25 169.5 15.3 228 170-402 64-307 (310)
89 2ast_B S-phase kinase-associat 99.8 3.1E-21 1.1E-25 177.2 10.1 248 197-455 49-311 (336)
90 2xwt_C Thyrotropin receptor; s 99.8 2.1E-20 7.3E-25 162.6 13.8 196 220-422 32-236 (239)
91 3m19_A Variable lymphocyte rec 99.8 2.4E-19 8.2E-24 157.1 18.9 181 220-405 15-195 (251)
92 2ca6_A RAN GTPase-activating p 99.8 4.4E-21 1.5E-25 179.5 7.3 244 161-425 23-316 (386)
93 2o6s_A Variable lymphocyte rec 99.8 1.2E-19 4.1E-24 154.2 13.9 158 267-431 27-184 (208)
94 1h6u_A Internalin H; cell adhe 99.8 7.5E-19 2.6E-23 158.6 18.9 195 193-405 39-233 (308)
95 3goz_A Leucine-rich repeat-con 99.8 1.2E-20 4.1E-25 174.8 7.2 246 159-404 11-299 (362)
96 2o6s_A Variable lymphocyte rec 99.8 1.6E-18 5.6E-23 147.2 14.4 155 293-455 28-183 (208)
97 4ay9_X Follicle-stimulating ho 99.8 4.7E-18 1.6E-22 156.5 14.6 225 222-455 12-241 (350)
98 1h6t_A Internalin B; cell adhe 99.8 8.6E-18 3E-22 150.3 15.4 169 243-425 45-213 (291)
99 3cvr_A Invasion plasmid antige 99.8 2E-17 7E-22 160.0 17.8 161 268-454 80-247 (571)
100 4ay9_X Follicle-stimulating ho 99.8 2.3E-17 7.9E-22 151.8 17.0 201 173-379 12-216 (350)
101 4ezg_A Putative uncharacterize 99.7 1.6E-17 5.4E-22 139.7 13.6 154 291-452 42-196 (197)
102 2xot_A Amphoterin-induced prot 99.7 1.1E-17 3.6E-22 154.7 13.1 154 295-449 41-201 (361)
103 2v9t_B SLIT homolog 2 protein 99.7 5.5E-17 1.9E-21 138.7 15.2 151 271-425 14-165 (220)
104 3e6j_A Variable lymphocyte rec 99.7 8.7E-17 3E-21 138.4 16.2 151 270-425 21-172 (229)
105 2v70_A SLIT-2, SLIT homolog 2 99.7 8.4E-17 2.9E-21 137.5 15.1 152 271-426 14-167 (220)
106 1h6t_A Internalin B; cell adhe 99.7 9E-17 3.1E-21 143.6 15.8 148 243-403 67-214 (291)
107 2v9t_B SLIT homolog 2 protein 99.7 9.6E-17 3.3E-21 137.2 15.1 153 247-403 14-166 (220)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 1.2E-16 4E-21 136.7 15.4 134 270-403 34-167 (220)
109 1m9s_A Internalin B; cell inva 99.7 9.8E-17 3.3E-21 157.1 16.1 189 221-426 23-211 (605)
110 1m9s_A Internalin B; cell inva 99.7 6.6E-17 2.3E-21 158.2 14.2 194 196-407 22-215 (605)
111 4ezg_A Putative uncharacterize 99.7 6.5E-17 2.2E-21 135.9 12.1 152 265-424 41-193 (197)
112 2xot_A Amphoterin-induced prot 99.7 1.1E-16 3.9E-21 147.8 13.1 176 222-402 21-202 (361)
113 3cvr_A Invasion plasmid antige 99.7 4.7E-16 1.6E-20 150.6 16.8 183 195-407 59-248 (571)
114 3e6j_A Variable lymphocyte rec 99.7 7E-16 2.4E-20 132.7 16.2 135 268-404 40-174 (229)
115 4fs7_A Uncharacterized protein 99.7 2E-15 6.9E-20 141.2 20.2 334 32-442 59-393 (394)
116 1xeu_A Internalin C; cellular 99.7 1.4E-16 4.8E-21 140.1 11.4 169 243-426 18-186 (263)
117 3sb4_A Hypothetical leucine ri 99.7 7.6E-17 2.6E-21 147.1 9.4 103 292-396 225-328 (329)
118 3sb4_A Hypothetical leucine ri 99.7 1.9E-16 6.6E-21 144.4 11.0 103 339-444 224-328 (329)
119 2ell_A Acidic leucine-rich nuc 99.7 3.4E-16 1.2E-20 127.9 9.4 135 317-455 24-164 (168)
120 4fs7_A Uncharacterized protein 99.6 1.3E-14 4.5E-19 135.7 19.9 311 13-398 65-375 (394)
121 1xeu_A Internalin C; cellular 99.6 6.3E-16 2.2E-20 135.9 10.0 173 217-406 17-189 (263)
122 1w8a_A SLIT protein; signaling 99.6 2.7E-15 9.2E-20 125.3 10.0 132 271-406 11-143 (192)
123 1dce_A Protein (RAB geranylger 99.6 3.8E-17 1.3E-21 159.0 -1.8 122 318-444 442-567 (567)
124 1w8a_A SLIT protein; signaling 99.6 8.9E-15 3E-19 122.1 12.5 131 296-429 11-143 (192)
125 2je0_A Acidic leucine-rich nuc 99.6 3.2E-15 1.1E-19 119.4 9.2 128 316-446 16-149 (149)
126 2ell_A Acidic leucine-rich nuc 99.6 8.9E-15 3E-19 119.5 11.8 133 268-403 24-161 (168)
127 2o6r_A Variable lymphocyte rec 99.6 2.3E-14 7.7E-19 118.1 13.1 110 342-452 29-139 (177)
128 4fdw_A Leucine rich hypothetic 99.6 1.6E-13 5.3E-18 127.8 19.6 197 242-447 178-380 (401)
129 4fdw_A Leucine rich hypothetic 99.6 1.4E-13 4.7E-18 128.1 18.5 242 193-450 111-358 (401)
130 2wfh_A SLIT homolog 2 protein 99.6 3.6E-14 1.2E-18 118.3 13.2 126 296-425 13-139 (193)
131 1dce_A Protein (RAB geranylger 99.6 2.2E-16 7.6E-21 153.6 -1.0 182 266-454 347-550 (567)
132 2je0_A Acidic leucine-rich nuc 99.6 1.3E-14 4.5E-19 115.9 9.3 127 268-397 17-148 (149)
133 4b8c_D Glucose-repressible alc 99.5 2.2E-15 7.6E-20 151.2 4.5 182 259-450 215-404 (727)
134 2wfh_A SLIT homolog 2 protein 99.5 1.2E-13 4.2E-18 115.1 13.4 128 271-403 13-140 (193)
135 1a9n_A U2A', U2A'; complex (nu 99.5 2.4E-14 8.1E-19 117.8 8.7 107 292-402 18-126 (176)
136 2o6r_A Variable lymphocyte rec 99.5 1.7E-13 5.8E-18 112.8 13.8 132 270-405 9-140 (177)
137 4gt6_A Cell surface protein; l 99.5 2.9E-12 9.8E-17 119.8 23.4 128 290-423 262-389 (394)
138 4b8c_D Glucose-repressible alc 99.5 8.6E-15 2.9E-19 147.0 3.9 190 244-447 173-369 (727)
139 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-13 4.2E-18 113.5 9.9 134 264-402 15-153 (176)
140 4gt6_A Cell surface protein; l 99.5 5.8E-12 2E-16 117.7 20.1 132 310-449 258-390 (394)
141 3g39_A Variable lymphocyte rec 99.4 5.8E-12 2E-16 102.6 11.7 105 318-425 10-115 (170)
142 1ds9_A Outer arm dynein; leuci 99.3 4.7E-15 1.6E-19 124.6 -7.7 132 266-402 16-153 (198)
143 2r9u_A Variable lymphocyte rec 99.3 1.1E-11 3.8E-16 101.3 11.5 103 320-425 15-118 (174)
144 1ds9_A Outer arm dynein; leuci 99.3 3.1E-14 1.1E-18 119.5 -4.0 133 263-403 43-186 (198)
145 3un9_A NLR family member X1; l 99.3 3.1E-13 1.1E-17 124.5 1.6 137 268-404 101-254 (372)
146 3g39_A Variable lymphocyte rec 99.3 1.9E-11 6.5E-16 99.5 11.4 106 296-404 12-117 (170)
147 4h09_A Hypothetical leucine ri 99.3 6E-10 2.1E-14 103.5 22.3 130 264-398 213-342 (379)
148 4h09_A Hypothetical leucine ri 99.3 6.1E-10 2.1E-14 103.5 21.0 142 242-389 215-356 (379)
149 2r9u_A Variable lymphocyte rec 99.3 4.3E-11 1.5E-15 97.7 11.5 88 317-404 33-120 (174)
150 3un9_A NLR family member X1; l 99.2 2.2E-12 7.4E-17 118.9 2.3 183 267-450 71-283 (372)
151 2ifg_A High affinity nerve gro 99.1 1.9E-10 6.6E-15 105.5 9.1 96 6-106 20-116 (347)
152 2ifg_A High affinity nerve gro 99.1 6.4E-10 2.2E-14 102.0 10.9 104 297-403 12-117 (347)
153 2ra8_A Uncharacterized protein 98.8 4.9E-09 1.7E-13 95.7 7.1 136 263-402 167-320 (362)
154 2ra8_A Uncharacterized protein 98.7 1.3E-08 4.4E-13 92.9 6.5 178 264-448 135-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 1.7E-08 5.8E-13 83.1 3.4 120 10-131 27-164 (185)
156 3e4g_A ATP synthase subunit S, 98.5 3.1E-08 1E-12 79.3 2.4 84 20-104 61-150 (176)
157 1io0_A Tropomodulin; LRR prote 98.5 4.7E-08 1.6E-12 80.4 3.1 19 263-281 31-50 (185)
158 3e4g_A ATP synthase subunit S, 98.5 2.9E-08 9.8E-13 79.4 1.4 34 294-327 62-95 (176)
159 3rw6_A Nuclear RNA export fact 98.2 1.9E-06 6.5E-11 74.4 5.9 80 42-124 168-257 (267)
160 3rw6_A Nuclear RNA export fact 98.0 6.5E-06 2.2E-10 71.1 5.7 62 316-379 169-234 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 0.0001 3.5E-09 60.0 3.1 41 338-378 67-111 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00013 4.5E-09 59.4 3.5 83 317-399 70-167 (197)
163 3rfe_A Platelet glycoprotein I 96.7 0.00097 3.3E-08 50.6 3.6 55 24-81 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.7 0.0032 1.1E-07 47.8 6.4 38 411-449 30-67 (130)
165 2lz0_A Uncharacterized protein 85.1 0.97 3.3E-05 32.0 4.0 45 353-398 8-52 (100)
166 2lz0_A Uncharacterized protein 81.7 1.4 4.8E-05 31.1 3.6 45 32-77 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.9e-49 Score=398.16 Aligned_cols=439 Identities=32% Similarity=0.432 Sum_probs=326.4
Q ss_pred ccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcccc
Q 048657 3 TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTG 82 (456)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 82 (456)
++|.+.+..+. .. +++|++|++++|.++...+. +.++++|++|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 186 s~n~l~~~~~~--~~-l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 261 (768)
T 3rgz_A 186 SGNKISGDVDV--SR-CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261 (768)
T ss_dssp CSSEEESCCBC--TT-CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEE
T ss_pred CCCcccccCCc--cc-CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccC
Confidence 56777776654 55 88888888888887665543 7888888888888888887778888888888888888888775
Q ss_pred ccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCc
Q 048657 83 SISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTF 162 (456)
Q Consensus 83 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 162 (456)
.++. . .+++|++|++++|.+.+..+......+++|+.|++++|.+.......+ ....+|+.|++..+... +.+
T Consensus 262 ~~~~--~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~---~~l~~L~~L~L~~n~l~-~~i 334 (768)
T 3rgz_A 262 PIPP--L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF---GSCSLLESLALSSNNFS-GEL 334 (768)
T ss_dssp SCCC--C-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG---GGCTTCCEEECCSSEEE-EEC
T ss_pred ccCc--c-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH---hcCCCccEEECCCCccc-CcC
Confidence 5554 2 667777777777777644443333334677777777776654332222 22335555555333221 122
Q ss_pred hH-HhhcCCCccEEEecCcccccccchhhhh--------------------------ccccceeeeecccCcCCCCCcCc
Q 048657 163 PK-FLYHQHDLEYVDLSHIKMNGEFPTWLLE--------------------------NNTKLIQLSVVNDSLAGPFRLPI 215 (456)
Q Consensus 163 ~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~--------------------------~~~~L~~L~l~~~~~~~~~~~~l 215 (456)
+. .+..+++|+.|++++|.+.+.++..+.. .++.|++|++.+|.+.+..+..+
T Consensus 335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 414 (768)
T 3rgz_A 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414 (768)
T ss_dssp CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence 22 2444555555555555444333333211 14566677777766666666777
Q ss_pred cCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcc
Q 048657 216 HSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL 295 (456)
Q Consensus 216 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L 295 (456)
..+++|+.|++++|.+.+..|..+.. +++|+.++++.|.+.+.+|..+..+++|++|++++|.+.+.+|..+ ..+++|
T Consensus 415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L 492 (768)
T 3rgz_A 415 SNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SNCTNL 492 (768)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTC
T ss_pred hcCCCCCEEECcCCcccCcccHHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH-hcCCCC
Confidence 78888888888888887667766654 7888888888888888888888888889999998888886666654 478889
Q ss_pred cEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCcc---------------
Q 048657 296 ESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRW--------------- 360 (456)
Q Consensus 296 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--------------- 360 (456)
++|++++|++.+..+.++..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++.+|..
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 99999999888888888888899999999999998888888889999999999988876555433
Q ss_pred -------------------------------------------------------ccCCCCCcEEEcCCCcccccCchhc
Q 048657 361 -------------------------------------------------------LGNLTWLQYIIMPNNHLEGLIPVEF 385 (456)
Q Consensus 361 -------------------------------------------------------~~~~~~L~~L~l~~~~~~~~~~~~~ 385 (456)
+..+++|+.|++++|.+++.+|..+
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 652 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence 3345778899999999998899999
Q ss_pred cCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCCC
Q 048657 386 CQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455 (456)
Q Consensus 386 ~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~ 455 (456)
..+++|+.|++++|.+++.+|..+. .++|++||+++|++.+.+|.. +..+++|+.|++++|+++|.||+
T Consensus 653 ~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-MSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG-GGGCCCCSEEECCSSEEEEECCS
T ss_pred hccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECcCCcccccCCC
Confidence 9999999999999999988887765 789999999999999888887 88899999999999999999995
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-47 Score=388.37 Aligned_cols=440 Identities=30% Similarity=0.404 Sum_probs=314.6
Q ss_pred CccccccchhhhH---HhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCC
Q 048657 2 STRIALNTSFLQI---IGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSN 78 (456)
Q Consensus 2 ~~~~~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 78 (456)
+++|.+++..+.. +.+ +++|++|++++|.++... .+.++++|++|++++|.+.+..|. +.++++|++|++++|
T Consensus 158 Ls~n~l~~~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 158 LSANSISGANVVGWVLSDG-CGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233 (768)
T ss_dssp CCSSCCEEETHHHHHHTTC-CTTCCEEECCSSEEESCC--BCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred CCCCccCCcCChhhhhhcc-CCCCCEEECCCCcccccC--CcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC
Confidence 4688999998877 666 999999999999976554 348999999999999999876666 999999999999999
Q ss_pred ccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCC
Q 048657 79 QLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYED 158 (456)
Q Consensus 79 ~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 158 (456)
.+++.++. .+.++++|++|++++|.+.+..+.. .+++|++|++++|.+.+.....+. ..+.+|+.|++..+. .
T Consensus 234 ~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~--~~~~~L~~L~Ls~n~-l 306 (768)
T 3rgz_A 234 KLSGDFSR-AISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLS--GACDTLTGLDLSGNH-F 306 (768)
T ss_dssp CCCSCHHH-HTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSC--TTCTTCSEEECCSSE-E
T ss_pred cCCCcccH-HHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHH--hhcCcCCEEECcCCc-C
Confidence 99966665 7899999999999999987544432 789999999999998754443322 123689999995553 3
Q ss_pred CCCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCc-cccEEeCCCCccCC----
Q 048657 159 GVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHK-QLRLLDISTNNFRG---- 233 (456)
Q Consensus 159 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~---- 233 (456)
....+..+..+++|+.|++++|.+.+.++...+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+.+
T Consensus 307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~ 386 (768)
T 3rgz_A 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386 (768)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT
T ss_pred CCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh
Confidence 3456778899999999999999998888877678999999999999988766665555444 55555555555443
Q ss_pred ----------------------CCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcC
Q 048657 234 ----------------------HIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVG 291 (456)
Q Consensus 234 ----------------------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 291 (456)
.+|..+.. +++|+.++++.|.+.+..|..+..+++|+.|++++|.+.+.++..+. .
T Consensus 387 ~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~ 464 (768)
T 3rgz_A 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-Y 464 (768)
T ss_dssp TTTCSTTCCCCEEECCSSEEEEECCGGGGG-CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-G
T ss_pred hhhhcccCCccEEECCCCccccccCHHHhc-CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc-C
Confidence 33333332 55566666666665555556666666666666666666544444432 4
Q ss_pred CCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEE
Q 048657 292 CVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYII 371 (456)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 371 (456)
+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++.+|..+..+++|+.|+
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 56666666666666655556666666666666666666666666666666677777766666666666666667777777
Q ss_pred cCCCcccccCchhc------------------------------------------------------------------
Q 048657 372 MPNNHLEGLIPVEF------------------------------------------------------------------ 385 (456)
Q Consensus 372 l~~~~~~~~~~~~~------------------------------------------------------------------ 385 (456)
+++|.+++.+|..+
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 77666654433322
Q ss_pred ----cCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCCC
Q 048657 386 ----CQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455 (456)
Q Consensus 386 ----~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~ 455 (456)
..+++|+.|++++|++++.+|..+. +++|+.|++++|.+++.+|.. |+++++|+.|++++|+++|++|+
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE-VGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEECCCG
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH-HhCCCCCCEEECCCCcccCcCCh
Confidence 2245566677777777666665544 567777777777777677766 67777777777777777777774
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.9e-46 Score=369.81 Aligned_cols=441 Identities=20% Similarity=0.194 Sum_probs=233.6
Q ss_pred CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657 2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81 (456)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 81 (456)
.++|.+++..|..+.+ +++|++|++++|.++.+.+++|.++++|++|++++|.+.+..|.++.++++|++|++++|.++
T Consensus 40 Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 118 (606)
T 3t6q_A 40 FSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118 (606)
T ss_dssp CTTCCCSEECTTTSTT-CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS
T ss_pred ccCCccCcCChhHhcc-CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc
Confidence 4678888888888888 999999999999888887778899999999999999988777888999999999999999888
Q ss_pred cccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCC------------------
Q 048657 82 GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPP------------------ 143 (456)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~------------------ 143 (456)
.++...+.++++|++|++++|.+.. .....+..+++|+.|++++|.+.......+.....
T Consensus 119 -~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 119 -SIDFIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp -CGGGSCCTTCTTCCEEECCSSCCCC-CCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECT
T ss_pred -cCCcchhccCCcccEEECCCCcccc-cCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccCh
Confidence 5544478888999999999988763 22233444788888888888775432211111110
Q ss_pred ----ccccceeeccCCCC------------------------CCCCc-hHHhhcC--CCccEEEecCcccccccchhhhh
Q 048657 144 ----KFQLSRLSLSSGYE------------------------DGVTF-PKFLYHQ--HDLEYVDLSHIKMNGEFPTWLLE 192 (456)
Q Consensus 144 ----~~~L~~l~l~~~~~------------------------~~~~~-~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~ 192 (456)
...++.+++..+.. ....+ +..+..+ .+++.++++++.+.+. +...+.
T Consensus 197 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~-~~~~~~ 275 (606)
T 3t6q_A 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI-SSNTFH 275 (606)
T ss_dssp TTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC-CTTTTT
T ss_pred hHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc-CHHHhc
Confidence 11222222211100 00000 0000000 1344555555544322 222234
Q ss_pred ccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccc-cccCCCCCc
Q 048657 193 NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPS-SFGNMKFLQ 271 (456)
Q Consensus 193 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~l~~~~~L~ 271 (456)
.+++|++|++++|.+. .++..+..+++|++|++++|.+.+..+..+. .+++|+.+++++|.+.+.++. .+..+++|+
T Consensus 276 ~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISAS-NFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGG-GCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred cccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhh-ccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 4555555555555444 2333444555555555555554422222222 244555555555444432222 244445555
Q ss_pred EEeccCCcCCCccc--chhhcCCCcccEEEccCCcccccccccccc-------------------------cccccEEEc
Q 048657 272 ILDLSNNHLTGEIP--EHLAVGCVNLESLALSNNNLEGHMFSRNFN-------------------------LANLKLLQL 324 (456)
Q Consensus 272 ~L~l~~~~l~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-------------------------~~~L~~L~l 324 (456)
+|++++|.+. ... ...+..+++|++|++++|.+.+..+..+.. +++|+.|++
T Consensus 354 ~L~l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 432 (606)
T 3t6q_A 354 ELDLSHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNL 432 (606)
T ss_dssp EEECCSSCCC-EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEEC
T ss_pred EEECCCCccc-cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEEC
Confidence 5555554443 221 111223444555555444444443344444 444555555
Q ss_pred cCccccccccccccCCCCCcEEEcCCCcCccc---cCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCcc
Q 048657 325 EGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGR---IPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNI 401 (456)
Q Consensus 325 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 401 (456)
++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 433 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 433 SHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp TTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCcc
Confidence 55544434444444455555555555544431 113344455555555555555444444455555555555555555
Q ss_pred CCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCC
Q 048657 402 SGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 451 (456)
Q Consensus 402 ~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 451 (456)
++..+..+. .++| +|++++|.+. .++...+..+++|+.|++++|++..
T Consensus 513 ~~~~~~~l~~l~~L-~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 513 TSSSIEALSHLKGI-YLNLASNHIS-IILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp CGGGGGGGTTCCSC-EEECCSSCCC-CCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred CcCChhHhCccccc-EEECcCCccc-ccCHhhcccCCCCCEEeCCCCCccc
Confidence 444433333 3344 5555555554 2333334445555555555555443
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=8.3e-45 Score=361.57 Aligned_cols=434 Identities=19% Similarity=0.171 Sum_probs=350.9
Q ss_pred hhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCC
Q 048657 10 SFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL 89 (456)
Q Consensus 10 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~ 89 (456)
.+|..+++ ++++|++++|.++.+++..|.++++|++|++++|.+.+..|.+|.++++|++|++++|.++ .++...+
T Consensus 26 ~iP~~l~~---~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~ 101 (606)
T 3t6q_A 26 EIPGTLPN---STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI-FMAETAL 101 (606)
T ss_dssp SCCTTSCT---TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCS-EECTTTT
T ss_pred cCcCCCCC---cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccc-ccChhhh
Confidence 45655555 7999999999999998889999999999999999999888999999999999999999998 5544489
Q ss_pred cCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcC
Q 048657 90 VHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQ 169 (456)
Q Consensus 90 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~ 169 (456)
.++++|++|++++|.+. ......+..+++|++|++++|.+....... .....+|+.|+++.+.. ....+..+..+
T Consensus 102 ~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~l-~~~~~~~~~~l 176 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPK---GFPTEKLKVLDFQNNAI-HYLSKEDMSSL 176 (606)
T ss_dssp SSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCT---TCCCTTCCEEECCSSCC-CEECHHHHHTT
T ss_pred cccccccEeeccccCcc-cCCcchhccCCcccEEECCCCcccccCccc---ccCCcccCEEEcccCcc-cccChhhhhhh
Confidence 99999999999999987 444567889999999999999987543222 22367899999965543 33346678888
Q ss_pred CCcc--EEEecCcccccccchhhh------------------------------------------------hcc--ccc
Q 048657 170 HDLE--YVDLSHIKMNGEFPTWLL------------------------------------------------ENN--TKL 197 (456)
Q Consensus 170 ~~L~--~L~l~~~~~~~~~~~~~~------------------------------------------------~~~--~~L 197 (456)
++|+ .+++++|.+.+..+..+. .+. ..+
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L 256 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred cccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCce
Confidence 8888 888988877654433221 111 167
Q ss_pred eeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccC
Q 048657 198 IQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 277 (456)
Q Consensus 198 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 277 (456)
+.+++.++.+....+..++.+++|++|++++|.+. .+|..+.. +++|+.+++++|.+.+..+..+..+++|++|++++
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred eEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 88888888888877777899999999999999988 77776654 89999999999999877788899999999999999
Q ss_pred CcCCCcccchhhcCCCcccEEEccCCcccccc--cccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCcc
Q 048657 278 NHLTGEIPEHLAVGCVNLESLALSNNNLEGHM--FSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSG 355 (456)
Q Consensus 278 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 355 (456)
|.+.+.++...+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 414 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence 98877777766678999999999999998765 5667889999999999999987778888899999999999998876
Q ss_pred ccCc-cccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCC---c-ccccccccEEEccCcccCCCCCc
Q 048657 356 RIPR-WLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLP---A-CFHPLSIKQVHLSKNMLHGQLKR 430 (456)
Q Consensus 356 ~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~-~~~~~~L~~l~l~~~~~~~~~~~ 430 (456)
..+. .+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++... . ...+++|++|++++|.+.+ ++.
T Consensus 415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~ 493 (606)
T 3t6q_A 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS-IDQ 493 (606)
T ss_dssp CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE-ECT
T ss_pred cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc-cCh
Confidence 5543 47888899999999998887777888888888888888888875221 1 2236788888888888864 433
Q ss_pred ccccCCCcceEEEccCcccCCCCCC
Q 048657 431 GTFFNCSSLVTLDLSYNRLNGSIPD 455 (456)
Q Consensus 431 ~~~~~~~~L~~L~l~~~~l~~~~p~ 455 (456)
..|..+++|+.|++++|++++..|+
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~ 518 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIE 518 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGG
T ss_pred hhhccccCCCEEECCCCccCcCChh
Confidence 4477788888888888888766553
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.1e-45 Score=362.04 Aligned_cols=438 Identities=21% Similarity=0.207 Sum_probs=307.9
Q ss_pred CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657 2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81 (456)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 81 (456)
.++|.+++..+..+++ +++|++|++++|.++.+++.+|.++++|++|++++|.+++..|.+|.++++|++|++++|.++
T Consensus 39 Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 117 (606)
T 3vq2_A 39 LSFNPLKILKSYSFSN-FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117 (606)
T ss_dssp CTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC
T ss_pred CCCCCcCEeChhhccC-CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc
Confidence 4678888888888888 999999999999998888788999999999999999998777899999999999999999998
Q ss_pred cccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCC---------------------
Q 048657 82 GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSL--------------------- 140 (456)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~--------------------- 140 (456)
.++...+.++++|++|++++|.+.....+..+..+++|++|++++|.+.......+..
T Consensus 118 -~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~ 196 (606)
T 3vq2_A 118 -SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFI 196 (606)
T ss_dssp -CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEE
T ss_pred -cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCccee
Confidence 6665578999999999999998874344567888999999999999876543221111
Q ss_pred ---CCCccccceeeccCCCCCCCCchHH----------------------------------------------------
Q 048657 141 ---IPPKFQLSRLSLSSGYEDGVTFPKF---------------------------------------------------- 165 (456)
Q Consensus 141 ---~~~~~~L~~l~l~~~~~~~~~~~~~---------------------------------------------------- 165 (456)
.....+|+.+++..+.......+..
T Consensus 197 ~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~ 276 (606)
T 3vq2_A 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD 276 (606)
T ss_dssp CTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCG
T ss_pred CcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccc
Confidence 0111245556554433221112222
Q ss_pred ----hhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhc
Q 048657 166 ----LYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGD 241 (456)
Q Consensus 166 ----l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 241 (456)
+..+++|+.++++++.+. .++ .+..+++|++|++.+|.+ ..++ .+ .+++|+.|++++|...+.. .+ .
T Consensus 277 ~~~~~~~l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~-~ 347 (606)
T 3vq2_A 277 DIVKFHCLANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KK-V 347 (606)
T ss_dssp GGGSCGGGTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CC-C
T ss_pred cccccccCCCCCEEEecCccch-hhh--hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hh-c
Confidence 233344444444444442 222 123445555555555555 2222 23 5555666666555332222 11 1
Q ss_pred cCCcceEEEccCCccCCC--ccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCccccccc-cccccccc
Q 048657 242 VLPSLYVFNNSMNALDGS--IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMF-SRNFNLAN 318 (456)
Q Consensus 242 ~~~~L~~l~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~ 318 (456)
.+++|+.++++.|.+.+. .+..+..+++|++|++++|.+. .++.. +..+++|++|++++|.+.+..+ ..+..+++
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCC-CTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhh-ccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence 356777777777766543 2556677777777777777765 44432 3467788888888887776555 46667888
Q ss_pred ccEEEccCccccccccccccCCCCCcEEEcCCCcCcc-ccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCc
Q 048657 319 LKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSG-RIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDIS 397 (456)
Q Consensus 319 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 397 (456)
|+.|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 8888888888876677778888888888888888876 367778888888888888888887777788888888888888
Q ss_pred CCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCC-cceEEEccCcccCCCCC
Q 048657 398 DNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCS-SLVTLDLSYNRLNGSIP 454 (456)
Q Consensus 398 ~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~p 454 (456)
+|++++..+..+. +++|+.|++++|.+. .+|.. +..++ +|+.|++++|++....|
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~-~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI-LQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC-GGGSCTTCCEEECCSCCCCCSST
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh-HhhhcccCcEEEccCCCcccCCc
Confidence 8888877665554 678888888888885 67776 77776 58888888888876544
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.9e-43 Score=355.06 Aligned_cols=207 Identities=23% Similarity=0.249 Sum_probs=127.0
Q ss_pred ceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEcc
Q 048657 246 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLE 325 (456)
Q Consensus 246 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 325 (456)
|+.++++.|.+.+..+..+..+++|+.|++++|.+.+.++...+..+++|+++++++|.+.......+..+++|+.|++.
T Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 462 (680)
T 1ziw_A 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLR 462 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhc
Confidence 33334444444433444555566666666666655544444444455666666666666555444555556666666666
Q ss_pred Ccccc--ccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCc--------hhccCCCCCCeEe
Q 048657 326 GNRFV--GEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIP--------VEFCQLDSLQILD 395 (456)
Q Consensus 326 ~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~~~~L~~L~ 395 (456)
+|.+. +..|..+..+++|+.|++++|.+++..+..+.++++|++|++++|.+++... ..+..+++|+.|+
T Consensus 463 ~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~ 542 (680)
T 1ziw_A 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542 (680)
T ss_dssp TSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEE
T ss_pred cccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEE
Confidence 66553 2455666677777777777777765555667777777777777777664321 2256667777777
Q ss_pred CcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCC
Q 048657 396 ISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSI 453 (456)
Q Consensus 396 l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 453 (456)
+++|+++..+...+. +++|+.|++++|.+. .++...|.++++|+.|++++|.+++..
T Consensus 543 L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~ 600 (680)
T 1ziw_A 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFNNQVSLKSLNLQKNLITSVE 600 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCCCBCC
T ss_pred CCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhHhCCCCCCCEEECCCCcCCccC
Confidence 777777755544433 567777777777775 566666777777777777777776543
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3e-42 Score=347.67 Aligned_cols=445 Identities=21% Similarity=0.194 Sum_probs=254.9
Q ss_pred ccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcccc
Q 048657 3 TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTG 82 (456)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 82 (456)
++|.+++..+..+.+ +++|++|++++|.++.+.++.|.++++|++|++++|.++...+.+|.++++|++|++++|.++
T Consensus 33 s~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~- 110 (680)
T 1ziw_A 33 THNQLRRLPAANFTR-YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ- 110 (680)
T ss_dssp CSSCCCCCCGGGGGG-GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-
T ss_pred CCCCCCCcCHHHHhC-CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-
Confidence 455666655555666 666666666666666665556666666666666666666444445666666666666666666
Q ss_pred ccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCC---
Q 048657 83 SISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDG--- 159 (456)
Q Consensus 83 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--- 159 (456)
.++...+.++++|++|++++|.+. ...+..+..+++|++|++++|.+.......+.. ....+|+.+++..+....
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 111 KIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEELDI-FANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp CCCSCTTTTCTTCCEEECCSSCCS-CCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG-GTTCEESEEECTTCCCCCBCT
T ss_pred ccChhHccccCCCCEEECCCCccc-ccCchhhcccccCCEEEccCCcccccCHHHhhc-cccccccEEECCCCcccccCh
Confidence 454445666666666666666655 233344556666666666666554322111100 112344555543332111
Q ss_pred -----------------------------------------------CCchHHhhcC--CCccEEEecCcccccccchhh
Q 048657 160 -----------------------------------------------VTFPKFLYHQ--HDLEYVDLSHIKMNGEFPTWL 190 (456)
Q Consensus 160 -----------------------------------------------~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~ 190 (456)
...+..+..+ ++|+.|++++|.+.+..+..
T Consensus 189 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~- 267 (680)
T 1ziw_A 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS- 267 (680)
T ss_dssp TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTT-
T ss_pred hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCccc-
Confidence 0111122222 12445555444443322222
Q ss_pred hhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCC-----CCc---hhhhccCCcceEEEccCCccCCCccc
Q 048657 191 LENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRG-----HIP---VEIGDVLPSLYVFNNSMNALDGSIPS 262 (456)
Q Consensus 191 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~ 262 (456)
+..+++|+.|++++|.+....+..+..+++|+.|+++++...+ .+| ...+..+++|+.++++.|.+.+..+.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~ 347 (680)
T 1ziw_A 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347 (680)
T ss_dssp TTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTT
T ss_pred ccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChh
Confidence 2444555555555554444444444444444444444332211 011 11222356677777777777666566
Q ss_pred cccCCCCCcEEeccCCcCCC-ccc--------------------------chhhcCCCcccEEEccCCcccccc-ccccc
Q 048657 263 SFGNMKFLQILDLSNNHLTG-EIP--------------------------EHLAVGCVNLESLALSNNNLEGHM-FSRNF 314 (456)
Q Consensus 263 ~l~~~~~L~~L~l~~~~l~~-~~~--------------------------~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~ 314 (456)
.+..+++|++|++++|.+.. .++ ...+..+++|++|++++|.+.+.. ...+.
T Consensus 348 ~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 427 (680)
T 1ziw_A 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427 (680)
T ss_dssp TTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT
T ss_pred HhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc
Confidence 66677777777776654221 111 111223444444444444443222 13344
Q ss_pred ccccccEEEccCccccccccccccCCCCCcEEEcCCCcCc--cccCccccCCCCCcEEEcCCCcccccCchhccCCCCCC
Q 048657 315 NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS--GRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQ 392 (456)
Q Consensus 315 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 392 (456)
.+++|++|++++|.+.+..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus 428 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 507 (680)
T 1ziw_A 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 507 (680)
T ss_dssp TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccC
Confidence 4455555555555554444445555566666666666554 35677788888999999999998877777888899999
Q ss_pred eEeCcCCccCCCCCc---------ccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCC
Q 048657 393 ILDISDNNISGSLPA---------CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 454 (456)
Q Consensus 393 ~L~l~~~~l~~~~~~---------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p 454 (456)
.|++++|++++.... ....++|+.|++++|.+. .++.+.|.++++|+.|++++|.++ .+|
T Consensus 508 ~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~-~l~ 576 (680)
T 1ziw_A 508 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLN-TLP 576 (680)
T ss_dssp EEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred EEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCC-cCC
Confidence 999999988764322 223678999999999986 788878999999999999999998 454
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.4e-43 Score=344.85 Aligned_cols=440 Identities=21% Similarity=0.236 Sum_probs=325.9
Q ss_pred ccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcccc
Q 048657 3 TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTG 82 (456)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 82 (456)
++|.+++..+..+++ +++|++|++++|.++.++++.|.++++|++|++++|.+++..+.+|.++++|++|++++|.++
T Consensus 36 s~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~- 113 (570)
T 2z63_A 36 SFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA- 113 (570)
T ss_dssp CSCCCCEECTTTTTT-CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-
T ss_pred cCCccCccChhHhhC-CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-
Confidence 567777777777888 888888888888888887777888888888888888887666778888888888888888887
Q ss_pred ccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCC---------------------
Q 048657 83 SISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLI--------------------- 141 (456)
Q Consensus 83 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~--------------------- 141 (456)
.++...+.++++|++|++++|.+.....+..+..+++|+.|++++|.+.......+...
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~ 193 (570)
T 2z63_A 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ 193 (570)
T ss_dssp CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEEC
T ss_pred cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecC
Confidence 66655678888888888888877632345667788888888888887654322111100
Q ss_pred ---CCccccceeeccCCCCCCCCchHHhhcCCCccEE--------------------------------EecCc-ccccc
Q 048657 142 ---PPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYV--------------------------------DLSHI-KMNGE 185 (456)
Q Consensus 142 ---~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L--------------------------------~l~~~-~~~~~ 185 (456)
....+++.+++.........++..+..+.+++.. ++.++ .+.+.
T Consensus 194 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~ 273 (570)
T 2z63_A 194 PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDD 273 (570)
T ss_dssp TTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESC
T ss_pred HHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhh
Confidence 0011334444433222222222222223222222 22221 12222
Q ss_pred cchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCcccccc
Q 048657 186 FPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFG 265 (456)
Q Consensus 186 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~ 265 (456)
.+. .+..+++|+.+++.++.+.. ++..+..+ +|+.|++++|.+. .+|.. .+++|+.+++.++...+..+. .
T Consensus 274 ~~~-~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~~---~l~~L~~L~l~~n~~~~~~~~--~ 344 (570)
T 2z63_A 274 IID-LFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGGNAFSE--V 344 (570)
T ss_dssp STT-TTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCBC---BCSSCCEEEEESCBSCCBCCC--C
T ss_pred chh-hhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCcc---cccccCEEeCcCCcccccccc--c
Confidence 222 23567788888888877663 45556666 8888888888876 55552 377889999988877654443 6
Q ss_pred CCCCCcEEeccCCcCCCccc-chhhcCCCcccEEEccCCcccccccccccccccccEEEccCcccccccc-ccccCCCCC
Q 048657 266 NMKFLQILDLSNNHLTGEIP-EHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIP-QSLSKCSSL 343 (456)
Q Consensus 266 ~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L 343 (456)
.+++|++|++++|.+.+... ...+..+++|++|++++|.+.+.... +..+++|+.|++++|.+.+..+ ..+.++++|
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 78999999999998873321 23345789999999999998876555 7889999999999999986554 468899999
Q ss_pred cEEEcCCCcCccccCccccCCCCCcEEEcCCCccc-ccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccC
Q 048657 344 EGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLE-GLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSK 421 (456)
Q Consensus 344 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~ 421 (456)
++|++++|.+.+..+..+..+++|++|++++|.++ +..|..+..+++|+.|++++|++++..+..+. +++|++|++++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 99999999999888999999999999999999997 46778899999999999999999988676654 78999999999
Q ss_pred cccCCCCCcccccCCCcceEEEccCcccCCCCCC
Q 048657 422 NMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455 (456)
Q Consensus 422 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~ 455 (456)
|.+. .++...|..+++|+.|++++|++++..|.
T Consensus 504 n~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 504 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp SCCS-CCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CcCC-CCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9997 45666689999999999999999999874
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.4e-42 Score=343.82 Aligned_cols=415 Identities=20% Similarity=0.159 Sum_probs=332.7
Q ss_pred CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657 2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81 (456)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 81 (456)
+++|.+++..|..+.+ +++|++|++++|.++.+.++.|.++++|++|++++|.+.+..+..+.++++|++|++++|.++
T Consensus 63 Ls~n~l~~i~~~~~~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 141 (606)
T 3vq2_A 63 LSRCEIETIEDKAWHG-LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141 (606)
T ss_dssp CTTCCCCEECTTTTTT-CTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCC
T ss_pred CCCCcccccCHHHhhc-hhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCccc
Confidence 4678888888888888 999999999999988887788999999999999999998666678999999999999999987
Q ss_pred c-ccCCCCCcCCCCccEEEcCCceeeeccCCCcccc---------------------------cccceEEeccCcccccc
Q 048657 82 G-SISSSPLVHLTSIEELMLSNNHFQIPISLEPFFN---------------------------HSRLKFFYAENNQINAE 133 (456)
Q Consensus 82 ~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---------------------------~~~L~~l~l~~~~~~~~ 133 (456)
+ .+|. .+.++++|++|++++|.+.. ..+..+.. ..+|+.+++++|.+...
T Consensus 142 ~~~lp~-~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~ 219 (606)
T 3vq2_A 142 SCKLPA-YFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSN 219 (606)
T ss_dssp CCCCCG-GGGTCTTCCEEECCSSCCCE-ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHH
T ss_pred ceechH-hHhhcCCCCEEEccCCccee-cChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchh
Confidence 4 3454 78889999999999987763 22222222 22566677766654210
Q ss_pred ------------------------------------------------------cccCcCCCCCccccceeeccCCCCCC
Q 048657 134 ------------------------------------------------------ITQSHSLIPPKFQLSRLSLSSGYEDG 159 (456)
Q Consensus 134 ------------------------------------------------------~~~~~~~~~~~~~L~~l~l~~~~~~~ 159 (456)
............+++.+++......
T Consensus 220 ~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~- 298 (606)
T 3vq2_A 220 IMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK- 298 (606)
T ss_dssp HHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-
T ss_pred HHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccch-
Confidence 0000011223456777777655443
Q ss_pred CCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCC--Cch
Q 048657 160 VTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGH--IPV 237 (456)
Q Consensus 160 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~ 237 (456)
.++ .+..+++|+.|++++|.+ +.++.. .+++|++|++.+|...... .+..+++|+.|++++|.+.+. .+.
T Consensus 299 -~l~-~l~~~~~L~~L~l~~n~l-~~lp~~---~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~ 370 (606)
T 3vq2_A 299 -YLE-DVPKHFKWQSLSIIRCQL-KQFPTL---DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSY 370 (606)
T ss_dssp -CCC-CCCTTCCCSEEEEESCCC-SSCCCC---CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCH
T ss_pred -hhh-hccccccCCEEEcccccC-cccccC---CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhh
Confidence 233 677889999999999998 577743 8999999999999655433 567899999999999988743 244
Q ss_pred hhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccc
Q 048657 238 EIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLA 317 (456)
Q Consensus 238 ~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 317 (456)
.+. .+++|+.++++.|.+.+ ++..+..+++|+.|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..++
T Consensus 371 ~~~-~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 371 SDL-GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp HHH-CCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhc-cCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 444 48999999999998774 5678899999999999999988555535556899999999999999988888888999
Q ss_pred cccEEEccCccccc-cccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeC
Q 048657 318 NLKLLQLEGNRFVG-EIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDI 396 (456)
Q Consensus 318 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 396 (456)
+|++|++++|.+.+ ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 99999999999986 36888999999999999999999888899999999999999999999888999999999999999
Q ss_pred cCCccCCCCCcccccc-cccEEEccCcccCCCCCc
Q 048657 397 SDNNISGSLPACFHPL-SIKQVHLSKNMLHGQLKR 430 (456)
Q Consensus 397 ~~~~l~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~ 430 (456)
++|+++..+......+ +|+++++++|++....+.
T Consensus 529 ~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 529 SFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp TTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred CCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999997666544454 699999999999755544
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-42 Score=354.79 Aligned_cols=439 Identities=21% Similarity=0.173 Sum_probs=233.8
Q ss_pred ccccccchhhhHHhhcCCCccEEeccCCC-CCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657 3 TRIALNTSFLQIIGESMPSLKYLSLSDSN-SSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81 (456)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 81 (456)
++|.+++..+..+.+ +++|++|+|++|. ...+++.+|.++++|++|+|++|.+.+..|.+|.++++|++|++++|.++
T Consensus 32 s~N~i~~i~~~~~~~-l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 110 (844)
T 3j0a_A 32 SFNYIRTVTASSFPF-LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS 110 (844)
T ss_dssp ESCCCCEECSSSCSS-CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCS
T ss_pred CCCcCCccChhHCcc-cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCC
Confidence 577888888888888 9999999998885 66676678888999999999999888777888888999999999999888
Q ss_pred cccCC-CCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCC
Q 048657 82 GSISS-SPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGV 160 (456)
Q Consensus 82 ~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 160 (456)
+.++. ..+.++++|++|++++|.+........+..+++|+.|++++|.+.......+.... ..+|+.+++..+....
T Consensus 111 ~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~-~~~L~~L~L~~n~l~~- 188 (844)
T 3j0a_A 111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ-GKTLSFFSLAANSLYS- 188 (844)
T ss_dssp SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH-HCSSCCCEECCSBSCC-
T ss_pred cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc-CCccceEECCCCcccc-
Confidence 54443 34788899999999988887444445678888999999988877543322211110 0234444442222111
Q ss_pred CchHHhhcCC------CccEEEecCcccccccchhhhh-----------------------------------c--cccc
Q 048657 161 TFPKFLYHQH------DLEYVDLSHIKMNGEFPTWLLE-----------------------------------N--NTKL 197 (456)
Q Consensus 161 ~~~~~l~~~~------~L~~L~l~~~~~~~~~~~~~~~-----------------------------------~--~~~L 197 (456)
..+..+..+. .|+.|++++|.+....+..+.. + .+++
T Consensus 189 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L 268 (844)
T 3j0a_A 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV 268 (844)
T ss_dssp CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCC
T ss_pred ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCc
Confidence 1111111111 1444444444332222111110 0 1345
Q ss_pred eeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccC
Q 048657 198 IQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 277 (456)
Q Consensus 198 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 277 (456)
+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|+++.|.+.+..+..+..+++|+.|++++
T Consensus 269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF-YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQK 347 (844)
T ss_dssp CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTT-TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCS
T ss_pred cEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHh-cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCC
Confidence 555555555444444444555555555555555442222222 2244555555555555444444455555555555555
Q ss_pred CcCCCcccchhhcCCCcccEEEccCCccccccc----------------------------------------ccccccc
Q 048657 278 NHLTGEIPEHLAVGCVNLESLALSNNNLEGHMF----------------------------------------SRNFNLA 317 (456)
Q Consensus 278 ~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----------------------------------------~~~~~~~ 317 (456)
|.+. .++...+..+++|++|++++|.+..... ..+..++
T Consensus 348 N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~ 426 (844)
T 3j0a_A 348 NHIA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426 (844)
T ss_dssp CCCC-CCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCT
T ss_pred CCCC-ccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCC
Confidence 5444 3333333344555555555544432110 0011334
Q ss_pred cccEEEccCcccccccc-ccccCCCCCcEEEcCCCcCc-----cccCccccCCCCCcEEEcCCCcccccCchhccCCCCC
Q 048657 318 NLKLLQLEGNRFVGEIP-QSLSKCSSLEGLHLNNNSLS-----GRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSL 391 (456)
Q Consensus 318 ~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 391 (456)
+|+.|++++|.+.+..+ ..+..+++|+.|++++|.++ +..+..|..+++|+.|++++|.+++.++..+..+++|
T Consensus 427 ~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 506 (844)
T 3j0a_A 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506 (844)
T ss_dssp TCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSC
T ss_pred ccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhh
Confidence 44444444444432111 11233444444444444443 1222334455555555555555555555555555555
Q ss_pred CeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCC
Q 048657 392 QILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 451 (456)
Q Consensus 392 ~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 451 (456)
+.|++++|++++.++..+. ++|+.|++++|.+.+..+.. +++|+.|++++|++..
T Consensus 507 ~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~~~----~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 507 RGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNPDV----FVSLSVLDITHNKFIC 561 (844)
T ss_dssp SEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCSCC----CSSCCEEEEEEECCCC
T ss_pred heeECCCCCCCccChhhhh-ccccEEECCCCcCCCCChhH----hCCcCEEEecCCCccc
Confidence 5555555555544443333 45555555555554333322 2345555555555443
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5e-41 Score=330.47 Aligned_cols=434 Identities=20% Similarity=0.209 Sum_probs=279.5
Q ss_pred ccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcccc
Q 048657 3 TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTG 82 (456)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 82 (456)
++|.+++..+..+.+ +++|++|++++|.++.+++++|.++++|++|++++|.+++..+..+.++++|++|++++|.+++
T Consensus 34 s~n~l~~~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 112 (549)
T 2z81_A 34 SFNKITYIGHGDLRA-CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112 (549)
T ss_dssp CSSCCCEECSSTTSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS
T ss_pred cCCccCccChhhhhc-CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccc
Confidence 456666666666666 7777777777777666665666677777777777777665555666677777777777776662
Q ss_pred -ccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCC
Q 048657 83 -SISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVT 161 (456)
Q Consensus 83 -~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 161 (456)
.++. .+.++++|++|++++|.+....+...+..+++|++|++++|.+....... +....+|+.+++..... ..
T Consensus 113 ~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~l~~n~~--~~ 186 (549)
T 2z81_A 113 LGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS---LKSIRDIHHLTLHLSES--AF 186 (549)
T ss_dssp SCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT---TTTCSEEEEEEEECSBS--TT
T ss_pred cchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh---hhccccCceEecccCcc--cc
Confidence 1222 56666777777777666333444455666677777777766665433222 23344666666644332 12
Q ss_pred chHHh-hcCCCccEEEecCccccccc--chhhhhccccceeeeecccCcCCCC----CcCccCCccccEEeCCCCccCCC
Q 048657 162 FPKFL-YHQHDLEYVDLSHIKMNGEF--PTWLLENNTKLIQLSVVNDSLAGPF----RLPIHSHKQLRLLDISTNNFRGH 234 (456)
Q Consensus 162 ~~~~l-~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~~ 234 (456)
++..+ ..+++|+.|++++|.+.+.. +......++.|+.+++.++.+.... ...+..+++|+.+++.+|.+.+.
T Consensus 187 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~ 266 (549)
T 2z81_A 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266 (549)
T ss_dssp HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECC
T ss_pred cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccc
Confidence 33332 34667777777776655321 2222345566777766665443211 11122334444444444433210
Q ss_pred C--------------------------c--------hhhhccCCcceEEEccCCccCCCccccc-cCCCCCcEEeccCCc
Q 048657 235 I--------------------------P--------VEIGDVLPSLYVFNNSMNALDGSIPSSF-GNMKFLQILDLSNNH 279 (456)
Q Consensus 235 ~--------------------------~--------~~~~~~~~~L~~l~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~ 279 (456)
. + .......++++.++++++.+. .+|..+ ..+++|++|++++|.
T Consensus 267 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~ 345 (549)
T 2z81_A 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENL 345 (549)
T ss_dssp SCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSC
T ss_pred ccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCc
Confidence 0 0 001122456777777777765 455554 468888888888888
Q ss_pred CCCcccch--hhcCCCcccEEEccCCccccccc--ccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCcc
Q 048657 280 LTGEIPEH--LAVGCVNLESLALSNNNLEGHMF--SRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSG 355 (456)
Q Consensus 280 l~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 355 (456)
+.+.++.. ....+++|++|++++|.+++... ..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 346 l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~- 423 (549)
T 2z81_A 346 MVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR- 423 (549)
T ss_dssp CCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-
T ss_pred cccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-
Confidence 77544322 23467888888888888876432 34667888888888888887 67777788888888888888876
Q ss_pred ccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccC
Q 048657 356 RIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFN 435 (456)
Q Consensus 356 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 435 (456)
.++..+ .++|+.|++++|.+++.+ ..+++|+.|++++|+++.. +.....++|++|++++|.+.+ ++.+.|..
T Consensus 424 ~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~~i-p~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~ 495 (549)
T 2z81_A 424 VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLKTL-PDASLFPVLLVMKISRNQLKS-VPDGIFDR 495 (549)
T ss_dssp CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSSC-CCGGGCTTCCEEECCSSCCCC-CCTTGGGG
T ss_pred cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccCcC-CCcccCccCCEEecCCCccCC-cCHHHHhc
Confidence 344333 257888888888887543 4788999999999999854 444557899999999999975 55555889
Q ss_pred CCcceEEEccCcccCCCCC
Q 048657 436 CSSLVTLDLSYNRLNGSIP 454 (456)
Q Consensus 436 ~~~L~~L~l~~~~l~~~~p 454 (456)
+++|+.|++++|++++..|
T Consensus 496 l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 496 LTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CTTCCEEECCSSCBCCCHH
T ss_pred CcccCEEEecCCCccCCCc
Confidence 9999999999999988765
No 12
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=332.44 Aligned_cols=429 Identities=19% Similarity=0.176 Sum_probs=310.0
Q ss_pred CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657 2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81 (456)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 81 (456)
+++|.++ .+|..++ ++|++|++++|.++.+++..|.++++|++|++++|.+++..|.+|.++++|++|++++|.++
T Consensus 7 ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 7 RSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp CTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred cCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 4678887 4776555 68999999999998888778999999999999999999788899999999999999999998
Q ss_pred cccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCcccc--ceeeccCCCCC-
Q 048657 82 GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQL--SRLSLSSGYED- 158 (456)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L--~~l~l~~~~~~- 158 (456)
.++.. .+++|++|++++|.+.....+..+..+++|++|++++|.+.... +....++ +.+++..+...
T Consensus 83 -~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~------~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 83 -KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS------VLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp -EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG------GGGGTTSCEEEEEEEECTTTT
T ss_pred -ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhh------ccccccceeeEEEeecccccc
Confidence 78873 78999999999999874334567889999999999999886521 1223344 88888554331
Q ss_pred CCCchHHhhcCC-CccEEEecCcccccccchhhhhccccceeeeecccC-------cCCCCCcCccCC------------
Q 048657 159 GVTFPKFLYHQH-DLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDS-------LAGPFRLPIHSH------------ 218 (456)
Q Consensus 159 ~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~~------------ 218 (456)
....+..+..+. ....++++++.+.+..+...+..++.|+.+++..|. +.+..+ .+..+
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence 223334443332 122334444444444444444455555555555543 111111 22223
Q ss_pred ---------------ccccEEeCCCCccCCCCchhhh----ccCCcceEEEccCCccCCCcc-ccccCC---CCCcEEec
Q 048657 219 ---------------KQLRLLDISTNNFRGHIPVEIG----DVLPSLYVFNNSMNALDGSIP-SSFGNM---KFLQILDL 275 (456)
Q Consensus 219 ---------------~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~l~l~~~~~~~~~~-~~l~~~---~~L~~L~l 275 (456)
++|+.|++++|.+.+.+|..++ ..++.|+.++++.+.+ .+| ..+..+ ++|+.|++
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEE
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEc
Confidence 3566666666666555555542 2356666666666655 233 222222 45777777
Q ss_pred cCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccc--cccccccCCCCCcEEEcCCCcC
Q 048657 276 SNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVG--EIPQSLSKCSSLEGLHLNNNSL 353 (456)
Q Consensus 276 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~ 353 (456)
+++.+. ..+. ...+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+
T Consensus 310 ~~n~l~-~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 310 SGTRMV-HMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp ESSCCC-CCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred CCCccc-cccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence 777665 2221 1468899999999999988777788889999999999999985 4556788999999999999999
Q ss_pred ccccCc-cccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCccc
Q 048657 354 SGRIPR-WLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGT 432 (456)
Q Consensus 354 ~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 432 (456)
++.+|. .+..+++|++|++++|.+++..+..+. ++|+.|++++|+++..+......++|++|++++|++. .++...
T Consensus 387 ~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~ 463 (520)
T 2z7x_B 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGI 463 (520)
T ss_dssp BCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTT
T ss_pred CcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHH
Confidence 864554 478899999999999999766665543 6999999999999966655667889999999999996 677777
Q ss_pred ccCCCcceEEEccCcccCCCC
Q 048657 433 FFNCSSLVTLDLSYNRLNGSI 453 (456)
Q Consensus 433 ~~~~~~L~~L~l~~~~l~~~~ 453 (456)
|..+++|+.|++++|+++.+.
T Consensus 464 ~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 464 FDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TTTCTTCCEEECCSSCBCCCH
T ss_pred hccCCcccEEECcCCCCcccC
Confidence 889999999999999998764
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.7e-40 Score=326.97 Aligned_cols=417 Identities=20% Similarity=0.197 Sum_probs=329.6
Q ss_pred CCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEE
Q 048657 20 PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 99 (456)
Q Consensus 20 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~ 99 (456)
+++++|++++|.++.++..+|.++++|++|++++|.+++..+.+|.++++|++|++++|.++ .++...+.++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcccccccc
Confidence 37999999999999998889999999999999999999777889999999999999999998 66666899999999999
Q ss_pred cCCceeeeccCCCcccccccceEEeccCccccccc-ccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCc----cE
Q 048657 100 LSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEI-TQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDL----EY 174 (456)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L----~~ 174 (456)
+++|.+. ..+...+..+++|++|++++|.+.... +. .+..+.+|+.|++..+... ...+..+..+++| +.
T Consensus 107 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~---~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp CTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCG---GGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCE
T ss_pred ccccccc-cCCCccccccccccEEecCCCccceecChh---hhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhh
Confidence 9999887 344446889999999999999876421 22 2344568999999655432 2234455666666 78
Q ss_pred EEecCcccccccchhhhhccccceeeeeccc-------------------------------------------------
Q 048657 175 VDLSHIKMNGEFPTWLLENNTKLIQLSVVND------------------------------------------------- 205 (456)
Q Consensus 175 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~------------------------------------------------- 205 (456)
++++++.+....+..+ ... +|+++++.++
T Consensus 182 L~l~~n~l~~~~~~~~-~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 259 (570)
T 2z63_A 182 LDLSLNPMNFIQPGAF-KEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259 (570)
T ss_dssp EECTTCCCCEECTTTT-TTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred cccCCCCceecCHHHh-ccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence 8888887765444332 222 5666665554
Q ss_pred ---------CcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEecc
Q 048657 206 ---------SLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLS 276 (456)
Q Consensus 206 ---------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~ 276 (456)
.+....+..+..+++|+.++++++.+. .+|..+.. + +|+.++++.|.+. .+|. ..+++|+.|+++
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~-~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~ 333 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYN-F-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFT 333 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSC-C-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEE
T ss_pred hhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhcc-C-CccEEeeccCccc-ccCc--ccccccCEEeCc
Confidence 222333455667788999999988887 56666554 4 8999999988877 4444 478889999999
Q ss_pred CCcCCCcccchhhcCCCcccEEEccCCcccccc--cccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCc
Q 048657 277 NNHLTGEIPEHLAVGCVNLESLALSNNNLEGHM--FSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS 354 (456)
Q Consensus 277 ~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 354 (456)
++.+.+..+. ..+++|++|++++|.+.... +..+..+++|+.|++++|.+.+ .+..+..+++|++|++++|.+.
T Consensus 334 ~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~ 409 (570)
T 2z63_A 334 SNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLK 409 (570)
T ss_dssp SCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEE
T ss_pred CCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccc
Confidence 9887644443 46899999999999987654 4567789999999999999984 4445899999999999999988
Q ss_pred cccC-ccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC-CCCCccc-ccccccEEEccCcccCCCCCcc
Q 048657 355 GRIP-RWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS-GSLPACF-HPLSIKQVHLSKNMLHGQLKRG 431 (456)
Q Consensus 355 ~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~ 431 (456)
+..+ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++ +..+..+ .+++|++|++++|.+.+..+.
T Consensus 410 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~- 488 (570)
T 2z63_A 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT- 488 (570)
T ss_dssp SCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-
T ss_pred cccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh-
Confidence 6655 57889999999999999999888899999999999999999987 3344444 478999999999999754444
Q ss_pred cccCCCcceEEEccCcccCCCCCC
Q 048657 432 TFFNCSSLVTLDLSYNRLNGSIPD 455 (456)
Q Consensus 432 ~~~~~~~L~~L~l~~~~l~~~~p~ 455 (456)
.|..+++|+.|++++|++++..|.
T Consensus 489 ~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 489 AFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTT
T ss_pred hhhcccCCCEEeCCCCcCCCCCHH
Confidence 489999999999999999976653
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.6e-41 Score=333.14 Aligned_cols=409 Identities=17% Similarity=0.199 Sum_probs=305.6
Q ss_pred CccccccchhhhHHhhcCCCccEEeccCCCCCCcc-------------c--------------------ccc--------
Q 048657 2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRIL-------------D--------------------RGL-------- 40 (456)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-------------~--------------------~~l-------- 40 (456)
.+++.+.|.+|.++++ +++|++|+|++|.+...+ . ..+
T Consensus 88 L~~~~l~g~lp~~l~~-L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~ 166 (636)
T 4eco_A 88 LEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166 (636)
T ss_dssp CTTSCCEEEECGGGGG-CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred ecCcccCCcCChHHhc-CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHh
Confidence 3578888889988888 999999999888531000 0 000
Q ss_pred -----------cCCCCCcEEEcc--cCcccccchhhhhcCCCCcEEeccCCccccc-----------------cCCCCCc
Q 048657 41 -----------CSLVHLQELYID--NNDLRGSLPWCLANMTSLRILDVSSNQLTGS-----------------ISSSPLV 90 (456)
Q Consensus 41 -----------~~l~~L~~L~l~--~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-----------------~~~~~~~ 90 (456)
.....++.+.+. +|.+++ .|..+.++++|++|++++|.+++. +|. .+.
T Consensus 167 ~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~ 244 (636)
T 4eco_A 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE-DLK 244 (636)
T ss_dssp HHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCC
T ss_pred hcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch-hhh
Confidence 001112222221 356665 778888888888888888888853 776 677
Q ss_pred --CCCCccEEEcCCceeeeccCCCcccccccceEEeccCcc-ccc-ccccCcCC---CCCccccceeeccCCCCCCCCch
Q 048657 91 --HLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQ-INA-EITQSHSL---IPPKFQLSRLSLSSGYEDGVTFP 163 (456)
Q Consensus 91 --~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~~~~~---~~~~~~L~~l~l~~~~~~~~~~~ 163 (456)
++++|++|++++|.+.+ ..+..+..+++|+.|++++|. +.+ ..+..+.. .....+|+.|++..+... .+|
T Consensus 245 ~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip 321 (636)
T 4eco_A 245 WDNLKDLTDVEVYNCPNLT-KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFP 321 (636)
T ss_dssp GGGCTTCCEEEEECCTTCS-SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCC
T ss_pred hcccCCCCEEEecCCcCCc-cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccC
Confidence 88888888888888764 334677888888888888887 654 22222111 122357788888655444 566
Q ss_pred H--HhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCcc-ccEEeCCCCccCCCCchhhh
Q 048657 164 K--FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQ-LRLLDISTNNFRGHIPVEIG 240 (456)
Q Consensus 164 ~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~ 240 (456)
. .+..+++|+.|++++|.+.+.++ .+..+++|+.|++++|.+. .++..+..+++ |+.|++++|.+. .+|..+.
T Consensus 322 ~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~ 397 (636)
T 4eco_A 322 VETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFD 397 (636)
T ss_dssp CHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCC
T ss_pred chhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhh
Confidence 6 78889999999999998877777 4578889999999998887 56666888888 999999999888 6776544
Q ss_pred cc-CCcceEEEccCCccCCCcccccc-------CCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCccccccccc
Q 048657 241 DV-LPSLYVFNNSMNALDGSIPSSFG-------NMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSR 312 (456)
Q Consensus 241 ~~-~~~L~~l~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 312 (456)
.. +++|+.++++.|.+.+..|..+. .+++|++|++++|.+. .++...+..+++|++|++++|.+.......
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~ 476 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNS 476 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSS
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHH
Confidence 31 34899999999998887777777 7788999999999888 788777767889999999999888544433
Q ss_pred cccc-------ccccEEEccCcccccccccccc--CCCCCcEEEcCCCcCccccCccccCCCCCcEEEc------CCCcc
Q 048657 313 NFNL-------ANLKLLQLEGNRFVGEIPQSLS--KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIM------PNNHL 377 (456)
Q Consensus 313 ~~~~-------~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~~~~ 377 (456)
+... ++|+.|++++|.++ .+|..+. .+++|++|++++|.+++ +|..+..+++|++|++ ++|.+
T Consensus 477 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 477 LKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp SEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred hccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcc
Confidence 3322 38999999999988 6777776 88999999999999885 7888889999999999 45677
Q ss_pred cccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccC
Q 048657 378 EGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLH 425 (456)
Q Consensus 378 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~ 425 (456)
.+..|..+..+++|+.|++++|++... +..+. ++|+.|++++|++.
T Consensus 555 ~~~~p~~l~~l~~L~~L~Ls~N~l~~i-p~~~~-~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 555 LREWPEGITLCPSLTQLQIGSNDIRKV-NEKIT-PNISVLDIKDNPNI 600 (636)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCCCBC-CSCCC-TTCCEEECCSCTTC
T ss_pred cccChHHHhcCCCCCEEECCCCcCCcc-CHhHh-CcCCEEECcCCCCc
Confidence 778888888899999999999998544 44333 78999999999775
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.7e-40 Score=336.67 Aligned_cols=419 Identities=21% Similarity=0.210 Sum_probs=268.4
Q ss_pred ccccccchh-hhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhh--hhcCCCCcEEeccCCc
Q 048657 3 TRIALNTSF-LQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWC--LANMTSLRILDVSSNQ 79 (456)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~ 79 (456)
++|.+.+.+ |..+.+ +++|++|+|++|.++.+.++.|.++++|++|++++|.+.+..+.. +.++++|++|++++|.
T Consensus 56 s~n~~~~~i~~~~f~~-L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~ 134 (844)
T 3j0a_A 56 GSQYTPLTIDKEAFRN-LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ 134 (844)
T ss_dssp CTTCCCCEECTTTTSS-CTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC
T ss_pred CCCCCccccCHHHhcC-CCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc
Confidence 455555666 667777 999999999999998887789999999999999999998655554 8899999999999999
Q ss_pred cccccCCCCCcCCCCccEEEcCCceeeeccCCCccccc--ccceEEeccCcccccccccCcCCCC---CccccceeeccC
Q 048657 80 LTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNH--SRLKFFYAENNQINAEITQSHSLIP---PKFQLSRLSLSS 154 (456)
Q Consensus 80 i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~l~l~~~~~~~~~~~~~~~~~---~~~~L~~l~l~~ 154 (456)
+++..+...+.++++|++|++++|.+.. .....+..+ ++|+.+++++|.+.......+.... ....|+.+++..
T Consensus 135 l~~~~~~~~~~~L~~L~~L~Ls~N~i~~-~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 213 (844)
T 3j0a_A 135 IRSLYLHPSFGKLNSLKSIDFSSNQIFL-VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213 (844)
T ss_dssp CCCCCCCGGGGTCSSCCEEEEESSCCCC-CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSS
T ss_pred ccccccchhHhhCCCCCEEECCCCcCCe-eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCC
Confidence 9844443468899999999999998762 233334333 5666666666555433222111110 011244444433
Q ss_pred CCCCCC---Cc--------------------------------hHHhhc--CCCccEEEecCcccccccchhhhhccccc
Q 048657 155 GYEDGV---TF--------------------------------PKFLYH--QHDLEYVDLSHIKMNGEFPTWLLENNTKL 197 (456)
Q Consensus 155 ~~~~~~---~~--------------------------------~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 197 (456)
+..... .+ ...+.. .++++.|++++|.+.+..+. .+..+++|
T Consensus 214 n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L 292 (844)
T 3j0a_A 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR-VFETLKDL 292 (844)
T ss_dssp CCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC-CSSSCCCC
T ss_pred CcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh-hhhcCCCC
Confidence 211000 00 000000 13445555554444322222 12344445
Q ss_pred eeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccC
Q 048657 198 IQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN 277 (456)
Q Consensus 198 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 277 (456)
+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+. .+++|+.++++.|.+....+..+..+++|+.|++++
T Consensus 293 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~ 371 (844)
T 3j0a_A 293 KVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY-GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371 (844)
T ss_dssp CEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCS-SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEET
T ss_pred CEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhc-CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCC
Confidence 5555554444444444444444455555544444422222222 244444444444444433333344444444444444
Q ss_pred CcCCC------------------cccc---------------------hhhcCCCcccEEEccCCcccccccc-cccccc
Q 048657 278 NHLTG------------------EIPE---------------------HLAVGCVNLESLALSNNNLEGHMFS-RNFNLA 317 (456)
Q Consensus 278 ~~l~~------------------~~~~---------------------~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~ 317 (456)
|.+.+ .++. .....+++|++|++++|.+...... .+..++
T Consensus 372 N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 451 (844)
T 3j0a_A 372 NALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP 451 (844)
T ss_dssp CCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT
T ss_pred CCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCC
Confidence 43321 1111 1123678999999999998754332 345689
Q ss_pred cccEEEccCccccc-----cccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCC
Q 048657 318 NLKLLQLEGNRFVG-----EIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQ 392 (456)
Q Consensus 318 ~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 392 (456)
+|+.|++++|.+.. ..+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++.++..+. ++|+
T Consensus 452 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~ 529 (844)
T 3j0a_A 452 SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLE 529 (844)
T ss_dssp TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCC
T ss_pred ccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--cccc
Confidence 99999999999863 3345678899999999999999988888899999999999999999987776665 7999
Q ss_pred eEeCcCCccCCCCCcccccccccEEEccCcccCCCCC
Q 048657 393 ILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLK 429 (456)
Q Consensus 393 ~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 429 (456)
.|++++|++++..+..+ .+++.+++++|++....+
T Consensus 530 ~L~Ls~N~l~~~~~~~~--~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 530 ILDISRNQLLAPNPDVF--VSLSVLDITHNKFICECE 564 (844)
T ss_dssp EEEEEEECCCCCCSCCC--SSCCEEEEEEECCCCSSS
T ss_pred EEECCCCcCCCCChhHh--CCcCEEEecCCCcccccc
Confidence 99999999998887664 489999999999865443
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.6e-40 Score=331.64 Aligned_cols=408 Identities=17% Similarity=0.187 Sum_probs=282.4
Q ss_pred CccccccchhhhHHhhcCCCccEEec-cCCCCCCc-ccc-----------------------------------------
Q 048657 2 STRIALNTSFLQIIGESMPSLKYLSL-SDSNSSRI-LDR----------------------------------------- 38 (456)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~-~~~----------------------------------------- 38 (456)
++++.+.|.+|+++++ +++|++|+| ++|.+... +..
T Consensus 330 Ls~~~L~G~ip~~l~~-L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l 408 (876)
T 4ecn_A 330 LAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI 408 (876)
T ss_dssp CTTTCCEEEECGGGGG-CTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHH
T ss_pred CccCCCCCcCchHHhc-cccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHh
Confidence 3578888889988888 999999999 55532111 000
Q ss_pred -------cc--cCCCCCcEEEccc--CcccccchhhhhcCCCCcEEeccCCcccc-----------------ccCCCCCc
Q 048657 39 -------GL--CSLVHLQELYIDN--NDLRGSLPWCLANMTSLRILDVSSNQLTG-----------------SISSSPLV 90 (456)
Q Consensus 39 -------~l--~~l~~L~~L~l~~--~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-----------------~~~~~~~~ 90 (456)
.+ .....++.+.+.. |.+++ +|..+.++++|++|++++|.+++ .+|. .+.
T Consensus 409 ~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~ 486 (876)
T 4ecn_A 409 NRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELS 486 (876)
T ss_dssp HTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCC
T ss_pred hhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhh
Confidence 00 1112233333332 56664 78889999999999999999885 2776 555
Q ss_pred --CCCCccEEEcCCceeeeccCCCcccccccceEEeccCcc-ccc-ccccCcC----CCCCccccceeeccCCCCCCCCc
Q 048657 91 --HLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQ-INA-EITQSHS----LIPPKFQLSRLSLSSGYEDGVTF 162 (456)
Q Consensus 91 --~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~-~~~~~~~----~~~~~~~L~~l~l~~~~~~~~~~ 162 (456)
++++|++|++++|.+.+.. +..+..+++|+.|++++|. +.. ..+..+. ......+|+.|++..+... .+
T Consensus 487 f~~L~~L~~L~Ls~N~l~~~i-P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~i 563 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNMTQL-PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EF 563 (876)
T ss_dssp GGGCTTCCEEEEESCTTCCSC-CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BC
T ss_pred hccCCCCCEEECcCCCCCccC-hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--cc
Confidence 8999999999998876433 4678889999999999987 654 2222111 2233446777777555444 56
Q ss_pred hH--HhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCcc-ccEEeCCCCccCCCCchhh
Q 048657 163 PK--FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQ-LRLLDISTNNFRGHIPVEI 239 (456)
Q Consensus 163 ~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~ 239 (456)
|. .+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+. .++..+..+++ |+.|++++|.+. .+|..+
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~ 638 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF 638 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCC
T ss_pred CChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhh
Confidence 65 7778888888888888776 555 3567788888888888777 56666777777 888888888877 666544
Q ss_pred hcc-CCcceEEEccCCccCCCcccc---cc--CCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccc
Q 048657 240 GDV-LPSLYVFNNSMNALDGSIPSS---FG--NMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRN 313 (456)
Q Consensus 240 ~~~-~~~L~~l~l~~~~~~~~~~~~---l~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 313 (456)
... .++|+.++++.|.+.+.+|.. +. .+++|+.|++++|.+. .+|...+..+++|+.|++++|.+.......+
T Consensus 639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 717 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSL 717 (876)
T ss_dssp CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSS
T ss_pred hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHh
Confidence 321 234888888888776544322 22 3447888888888877 7777666677888888888887774433333
Q ss_pred c-------ccccccEEEccCcccccccccccc--CCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCC------Cccc
Q 048657 314 F-------NLANLKLLQLEGNRFVGEIPQSLS--KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN------NHLE 378 (456)
Q Consensus 314 ~-------~~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~ 378 (456)
. ++++|+.|++++|.+. .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|++++ |.+.
T Consensus 718 ~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 718 KPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp SCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred ccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccc
Confidence 2 2237888888888887 6666665 78888888888888874 677777888888888865 6666
Q ss_pred ccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccC
Q 048657 379 GLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLH 425 (456)
Q Consensus 379 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~ 425 (456)
+.+|..+..+++|+.|++++|++. ..|..+ .++|+.|++++|++.
T Consensus 796 ~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l-~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 796 RQWPTGITTCPSLIQLQIGSNDIR-KVDEKL-TPQLYILDIADNPNI 840 (876)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCCC-BCCSCC-CSSSCEEECCSCTTC
T ss_pred ccChHHHhcCCCCCEEECCCCCCC-ccCHhh-cCCCCEEECCCCCCC
Confidence 677777888888888888888884 344433 257888888888775
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.8e-39 Score=319.16 Aligned_cols=357 Identities=19% Similarity=0.240 Sum_probs=291.3
Q ss_pred CCccccccCCCCCcCCCCccEEEcCCceeeec----------------cCCCccc--ccccceEEeccCcccccccccCc
Q 048657 77 SNQLTGSISSSPLVHLTSIEELMLSNNHFQIP----------------ISLEPFF--NHSRLKFFYAENNQINAEITQSH 138 (456)
Q Consensus 77 ~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------------~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~ 138 (456)
.|.+++ +|. .+.++++|++|++++|.+.+. ..+..+. .+++|++|++++|.+....+.
T Consensus 192 ~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-- 267 (636)
T 4eco_A 192 SNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-- 267 (636)
T ss_dssp SCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT--
T ss_pred cCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH--
Confidence 356774 776 799999999999999998742 0456677 999999999999988765543
Q ss_pred CCCCCccccceeeccCCCCCCC-CchHHhhcC------CCccEEEecCcccccccch-hhhhccccceeeeecccCcCCC
Q 048657 139 SLIPPKFQLSRLSLSSGYEDGV-TFPKFLYHQ------HDLEYVDLSHIKMNGEFPT-WLLENNTKLIQLSVVNDSLAGP 210 (456)
Q Consensus 139 ~~~~~~~~L~~l~l~~~~~~~~-~~~~~l~~~------~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~ 210 (456)
.+....+|+.|++..+....+ .+|..+..+ ++|+.|++++|.+. .++. ..+..+++|+.|++++|.+.+.
T Consensus 268 -~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ 345 (636)
T 4eco_A 268 -FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGK 345 (636)
T ss_dssp -TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEE
T ss_pred -HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccc
Confidence 345566999999976653444 678888776 99999999999988 6666 2457899999999999999866
Q ss_pred CCcCccCCccccEEeCCCCccCCCCchhhhccCCc-ceEEEccCCccCCCccccccCCC--CCcEEeccCCcCCCcccch
Q 048657 211 FRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPS-LYVFNNSMNALDGSIPSSFGNMK--FLQILDLSNNHLTGEIPEH 287 (456)
Q Consensus 211 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~l~~~~~~~ 287 (456)
++ .+..+++|+.|++++|.+. .+|..+.. +++ |+.+++++|.+. .+|..+...+ +|+.|++++|.+.+..|..
T Consensus 346 ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 346 LP-AFGSEIKLASLNLAYNQIT-EIPANFCG-FTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp CC-CCEEEEEESEEECCSSEEE-ECCTTSEE-ECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred hh-hhCCCCCCCEEECCCCccc-cccHhhhh-hcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhh
Confidence 66 8889999999999999988 77877665 677 999999999988 6787776654 8999999999998665544
Q ss_pred hh------cCCCcccEEEccCCcccccccccccccccccEEEccCcccccccccc-ccC-------CCCCcEEEcCCCcC
Q 048657 288 LA------VGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQS-LSK-------CSSLEGLHLNNNSL 353 (456)
Q Consensus 288 ~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~-------l~~L~~L~l~~~~~ 353 (456)
+. ..+++|++|++++|.+.......+..+++|+.|++++|.+. .+|.. +.. +++|++|++++|.+
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 500 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKL 500 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCC
T ss_pred hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcC
Confidence 32 04678999999999998766555667899999999999998 55443 332 23999999999999
Q ss_pred ccccCcccc--CCCCCcEEEcCCCcccccCchhccCCCCCCeEeC------cCCccCCCCCcccc-cccccEEEccCccc
Q 048657 354 SGRIPRWLG--NLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDI------SDNNISGSLPACFH-PLSIKQVHLSKNML 424 (456)
Q Consensus 354 ~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~~~l~~~~~~~~~-~~~L~~l~l~~~~~ 424 (456)
+ .+|..+. .+++|++|++++|.+++ +|..+..+++|+.|++ ++|++.+..+..+. +++|++|++++|.+
T Consensus 501 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 501 T-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp C-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred C-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence 8 7888886 89999999999999997 6788889999999999 45777777776554 78999999999999
Q ss_pred CCCCCcccccCCCcceEEEccCcccC
Q 048657 425 HGQLKRGTFFNCSSLVTLDLSYNRLN 450 (456)
Q Consensus 425 ~~~~~~~~~~~~~~L~~L~l~~~~l~ 450 (456)
+.+|.. +. ++|+.|++++|++.
T Consensus 579 -~~ip~~-~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 579 -RKVNEK-IT--PNISVLDIKDNPNI 600 (636)
T ss_dssp -CBCCSC-CC--TTCCEEECCSCTTC
T ss_pred -CccCHh-Hh--CcCCEEECcCCCCc
Confidence 688887 33 89999999999876
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6.8e-38 Score=300.86 Aligned_cols=386 Identities=19% Similarity=0.191 Sum_probs=243.3
Q ss_pred cEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCC
Q 048657 23 KYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 102 (456)
Q Consensus 23 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~ 102 (456)
+.++.+++.++.++. +. ++|++|++++|.+++..|..+.++++|++|++++|.+.+.++...+.++++|++|++++
T Consensus 13 ~~~~c~~~~l~~lp~--l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSSCCC--CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcccCCC--CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 345666666666663 22 56777777777777666677777777777777777766556555677777777777777
Q ss_pred ceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCccc
Q 048657 103 NHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKM 182 (456)
Q Consensus 103 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 182 (456)
|.+. ...+..+..+++|++|++++|.+...... ...+..+++|+.|++++|.+
T Consensus 89 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------------------~~~~~~l~~L~~L~L~~n~l 141 (455)
T 3v47_A 89 NQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLS--------------------------GNFFKPLTSLEMLVLRDNNI 141 (455)
T ss_dssp CTTC-EECTTTTTTCTTCCEEECTTSCCBTHHHH--------------------------SSTTTTCTTCCEEECCSSBC
T ss_pred CccC-ccChhhccCcccCCEEeCCCCCCCccccC--------------------------cccccCcccCCEEECCCCcc
Confidence 7665 34445666677777777777665321000 01144566677777777766
Q ss_pred ccccchhhhhccccceeeeecccCcCCCCCcCccCC--ccccEEeCCCCccCCCCchhhh-------ccCCcceEEEccC
Q 048657 183 NGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSH--KQLRLLDISTNNFRGHIPVEIG-------DVLPSLYVFNNSM 253 (456)
Q Consensus 183 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~-------~~~~~L~~l~l~~ 253 (456)
.+..+..++..+++|++|++++|.+....+..+..+ .+++.++++++.+.+..+..+. ..+++|+.+++++
T Consensus 142 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~ 221 (455)
T 3v47_A 142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG 221 (455)
T ss_dssp CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT
T ss_pred CccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCC
Confidence 655555545666666666666666665555555443 5667777777666532222111 0134555555555
Q ss_pred CccCCCccccccC---CCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCccccccccccc--ccccccEEEccCcc
Q 048657 254 NALDGSIPSSFGN---MKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNF--NLANLKLLQLEGNR 328 (456)
Q Consensus 254 ~~~~~~~~~~l~~---~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~ 328 (456)
|.+.+..+..+.. .++++.|+++++...+.... .+.+.......+. ..++|+.|++++|.
T Consensus 222 n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 222 NGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG---------------HTNFKDPDNFTFKGLEASGVKTCDLSKSK 286 (455)
T ss_dssp SCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT---------------CCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred CcccccchhhhhccccccceeeEeeccccccccccc---------------hhhhccCcccccccccccCceEEEecCcc
Confidence 5554444433322 24555555555533211100 0001111111111 23578888888888
Q ss_pred ccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcc
Q 048657 329 FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPAC 408 (456)
Q Consensus 329 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 408 (456)
+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..
T Consensus 287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 366 (455)
T 3v47_A 287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS 366 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence 87666777788888888888888887777777888888888888888887777777888888888888888887776655
Q ss_pred cc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCCC
Q 048657 409 FH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455 (456)
Q Consensus 409 ~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~ 455 (456)
+. +++|++|++++|.+. .++...|..+++|+.|++++|++++..|.
T Consensus 367 ~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 367 FLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccccccccEEECCCCccc-cCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 44 678888888888885 56666677888888888888888888773
No 19
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.3e-39 Score=317.71 Aligned_cols=433 Identities=18% Similarity=0.150 Sum_probs=301.6
Q ss_pred CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657 2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81 (456)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 81 (456)
++++.+++ +|..++ ++|++|++++|.++.+++..|.++++|++|++++|.+++..|.+|.++++|++|++++|.++
T Consensus 38 ls~~~L~~-ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 113 (562)
T 3a79_B 38 YSNRNLTH-VPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113 (562)
T ss_dssp CTTSCCCS-CCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred cCCCCCcc-CCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC
Confidence 45677775 665544 58999999999988888778899999999999999988777888999999999999999988
Q ss_pred cccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCC-CC
Q 048657 82 GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYED-GV 160 (456)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~ 160 (456)
.++.. .+++|++|++++|++.....+..+..+++|+.|++++|.+... .+...... +|+.+++..+... ..
T Consensus 114 -~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L-~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 114 -NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHL-HLSCILLDLVSYHIKG 185 (562)
T ss_dssp -EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTS-CEEEEEEEESSCCCCS
T ss_pred -ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhc-eeeEEEeecccccccc
Confidence 78863 7889999999999887323346788889999999998887542 11111222 3477777554331 12
Q ss_pred CchHHhhcCC-CccEEEecCcccccccchhhhhccccceeeeeccc----------------------------CcCCCC
Q 048657 161 TFPKFLYHQH-DLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVND----------------------------SLAGPF 211 (456)
Q Consensus 161 ~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~----------------------------~~~~~~ 211 (456)
..+..+..+. ..-.++++++.+.+..+......+++|+.+++..+ .+....
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 2223333322 01123344444443333333344455555555443 221100
Q ss_pred Cc---CccCCccccEEeCCCCccCCCCchhhh----ccCCcceEEEccCCccCCCcc-cccc---CCCCCcEEeccCCcC
Q 048657 212 RL---PIHSHKQLRLLDISTNNFRGHIPVEIG----DVLPSLYVFNNSMNALDGSIP-SSFG---NMKFLQILDLSNNHL 280 (456)
Q Consensus 212 ~~---~l~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~l~l~~~~~~~~~~-~~l~---~~~~L~~L~l~~~~l 280 (456)
.. .....++|++|++++|.+.+.+|..++ ..++.|+.+++..+.+ .+| ..+. ...++++|+++++.+
T Consensus 266 ~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCc
Confidence 00 001123666677766666655555442 2244444444444443 222 1111 125688888888876
Q ss_pred CCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcccccc--ccccccCCCCCcEEEcCCCcCccccC
Q 048657 281 TGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGE--IPQSLSKCSSLEGLHLNNNSLSGRIP 358 (456)
Q Consensus 281 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~ 358 (456)
. .... ...+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+..+++|++|++++|.+++.+|
T Consensus 344 ~-~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 420 (562)
T 3a79_B 344 I-HMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420 (562)
T ss_dssp C-CCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS
T ss_pred c-cccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC
Confidence 5 3221 14688999999999999987788888999999999999999852 34668899999999999999987455
Q ss_pred c-cccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCC
Q 048657 359 R-WLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCS 437 (456)
Q Consensus 359 ~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 437 (456)
. .+..+++|++|++++|.+++..+..+. ++|+.|++++|+++..+...+..++|++|++++|.+. .++...|..++
T Consensus 421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~ 497 (562)
T 3a79_B 421 DRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLT 497 (562)
T ss_dssp SCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCT
T ss_pred hhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCC
Confidence 4 588899999999999999865555443 6999999999999977666677889999999999996 68877789999
Q ss_pred cceEEEccCcccCCCCC
Q 048657 438 SLVTLDLSYNRLNGSIP 454 (456)
Q Consensus 438 ~L~~L~l~~~~l~~~~p 454 (456)
+|+.|++++|++.+..|
T Consensus 498 ~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 498 SLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TCCCEECCSCCBCCCHH
T ss_pred CCCEEEecCCCcCCCcc
Confidence 99999999999987643
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.6e-38 Score=315.72 Aligned_cols=414 Identities=18% Similarity=0.200 Sum_probs=317.4
Q ss_pred CCccEEeccCCCCCCcccccccCCCCCcEEEc-ccCcccccchhh-----------------------------------
Q 048657 20 PSLKYLSLSDSNSSRILDRGLCSLVHLQELYI-DNNDLRGSLPWC----------------------------------- 63 (456)
Q Consensus 20 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l-~~~~~~~~~~~~----------------------------------- 63 (456)
.+++.|+|+++.+....+..++++++|++|+| ++|.+.+..+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 35777888877765333357778888888888 666543321100
Q ss_pred -----h-----------hcCCCCcEEeccC--CccccccCCCCCcCCCCccEEEcCCceeeec----------------c
Q 048657 64 -----L-----------ANMTSLRILDVSS--NQLTGSISSSPLVHLTSIEELMLSNNHFQIP----------------I 109 (456)
Q Consensus 64 -----~-----------~~l~~L~~L~l~~--~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------------~ 109 (456)
+ .....++.+.+.. |.+++ +|. .+.++++|++|++++|.+.+. .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 0 0111222233332 56664 776 799999999999999998851 1
Q ss_pred CCCccc--ccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCC-CchHHhhcCC-------CccEEEecC
Q 048657 110 SLEPFF--NHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGV-TFPKFLYHQH-------DLEYVDLSH 179 (456)
Q Consensus 110 ~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~l~~~~-------~L~~L~l~~ 179 (456)
.+..+. .+++|+.|++++|.+....+.. +..+.+|+.|++..+....+ .+|..+..++ +|+.|++++
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~---l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDF---LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGG---GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHH---HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 445555 9999999999999876655433 34556899999976653444 6777766655 999999999
Q ss_pred cccccccch-hhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCc-ceEEEccCCccC
Q 048657 180 IKMNGEFPT-WLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPS-LYVFNNSMNALD 257 (456)
Q Consensus 180 ~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~l~l~~~~~~ 257 (456)
|.+. .+|. ..+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+. .+|..+.. +++ |+.|++++|.+.
T Consensus 558 N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~-l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 558 NNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCA-FTDQVEGLGFSHNKLK 632 (876)
T ss_dssp SCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCE-ECTTCCEEECCSSCCC
T ss_pred CcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhh-ccccCCEEECcCCCCC
Confidence 9988 6776 24578999999999999988 555 8899999999999999998 78877665 677 999999999988
Q ss_pred CCccccccCCCC--CcEEeccCCcCCCcccchh----hcCCCcccEEEccCCcccccccccccccccccEEEccCccccc
Q 048657 258 GSIPSSFGNMKF--LQILDLSNNHLTGEIPEHL----AVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVG 331 (456)
Q Consensus 258 ~~~~~~l~~~~~--L~~L~l~~~~l~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 331 (456)
.+|..+...+. |+.|++++|.+.+.++... ....++|+.|++++|.+.......+..+++|+.|++++|.+.
T Consensus 633 -~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~- 710 (876)
T 4ecn_A 633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT- 710 (876)
T ss_dssp -SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-
T ss_pred -cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-
Confidence 67777776654 9999999999876554321 113458999999999998655555567899999999999998
Q ss_pred cccccccC--------CCCCcEEEcCCCcCccccCcccc--CCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcC---
Q 048657 332 EIPQSLSK--------CSSLEGLHLNNNSLSGRIPRWLG--NLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISD--- 398 (456)
Q Consensus 332 ~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~--- 398 (456)
.+|..+.. +++|+.|++++|.++ .+|..+. .+++|+.|++++|.+++ +|..+..+++|+.|++++
T Consensus 711 ~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ 788 (876)
T 4ecn_A 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRD 788 (876)
T ss_dssp CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBC
T ss_pred ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCC
Confidence 55554333 338999999999998 7888887 89999999999999987 577888999999999976
Q ss_pred ---CccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCC
Q 048657 399 ---NNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 451 (456)
Q Consensus 399 ---~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 451 (456)
|.+.+..+..+. +++|+.|++++|.+ +.+|.. +. ++|+.|+|++|++..
T Consensus 789 ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LT--PQLYILDIADNPNIS 841 (876)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CC--SSSCEEECCSCTTCE
T ss_pred cccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hc--CCCCEEECCCCCCCc
Confidence 777777776554 78999999999999 788887 33 799999999999863
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.6e-38 Score=309.35 Aligned_cols=396 Identities=18% Similarity=0.189 Sum_probs=276.2
Q ss_pred CCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEE
Q 048657 20 PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELM 99 (456)
Q Consensus 20 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~ 99 (456)
++|++|++++|.++.+++..|.++++|++|++++|.+++..|.+|.++++|++|++++|.++ .++...+.++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEE
Confidence 46777777777776666566777777777777777776666667777777777777777776 44443466777777777
Q ss_pred cCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecC
Q 048657 100 LSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSH 179 (456)
Q Consensus 100 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 179 (456)
+++|.+.....+..+..+++|+.|++++|.... ...+..+..+++|+.|++++
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~---------------------------~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS---------------------------EIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC---------------------------EECTTTTTTCCEEEEEEEEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCcccc---------------------------ccCHhhhhcccccCeeeccC
Confidence 777766532233456666777777776664211 11123567788999999999
Q ss_pred cccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCC--chhhhccCCcceEEEccCCccC
Q 048657 180 IKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHI--PVEIGDVLPSLYVFNNSMNALD 257 (456)
Q Consensus 180 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~l~l~~~~~~ 257 (456)
|.+.+..+.. +..+++|++|++..+.........+..+++|+.|++++|.+.+.. +......+++|+.+++..+.+.
T Consensus 158 n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 236 (549)
T 2z81_A 158 LSLRNYQSQS-LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT 236 (549)
T ss_dssp TTCCEECTTT-TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred CcccccChhh-hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence 9988766655 467899999999988765433333456899999999999887421 2222223444555544444322
Q ss_pred CCcc---------------------------------------------------------------ccccCCCCCcEEe
Q 048657 258 GSIP---------------------------------------------------------------SSFGNMKFLQILD 274 (456)
Q Consensus 258 ~~~~---------------------------------------------------------------~~l~~~~~L~~L~ 274 (456)
+..+ ......++|+.|+
T Consensus 237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~ 316 (549)
T 2z81_A 237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT 316 (549)
T ss_dssp HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred hhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEE
Confidence 1000 0011234567777
Q ss_pred ccCCcCCCcccchhhcCCCcccEEEccCCccccccc---ccccccccccEEEccCcccccccc--ccccCCCCCcEEEcC
Q 048657 275 LSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMF---SRNFNLANLKLLQLEGNRFVGEIP--QSLSKCSSLEGLHLN 349 (456)
Q Consensus 275 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~ 349 (456)
+++|.+. .+|..++..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+++..+ ..+..+++|++|+++
T Consensus 317 l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls 395 (549)
T 2z81_A 317 VENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395 (549)
T ss_dssp EESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECT
T ss_pred eccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECC
Confidence 7777765 6676665568889999999998876542 335678889999999998874322 457788999999999
Q ss_pred CCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCC
Q 048657 350 NNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLK 429 (456)
Q Consensus 350 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 429 (456)
+|.++ .+|..+..+++|++|++++|.++... ..+ .++|+.|++++|++++.+ ...++|++|++++|++. .+|
T Consensus 396 ~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~-~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~-~ip 467 (549)
T 2z81_A 396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVK-TCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLK-TLP 467 (549)
T ss_dssp TCCCC-CCCSCCCCCTTCCEEECTTSCCSCCC-TTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-SCC
T ss_pred CCCCc-cCChhhcccccccEEECCCCCccccc-chh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccC-cCC
Confidence 99887 67888888899999999999887443 222 258999999999888754 24779999999999996 677
Q ss_pred cccccCCCcceEEEccCcccCCCCCC
Q 048657 430 RGTFFNCSSLVTLDLSYNRLNGSIPD 455 (456)
Q Consensus 430 ~~~~~~~~~L~~L~l~~~~l~~~~p~ 455 (456)
.. ..+++|+.|++++|++++.+|+
T Consensus 468 ~~--~~l~~L~~L~Ls~N~l~~~~~~ 491 (549)
T 2z81_A 468 DA--SLFPVLLVMKISRNQLKSVPDG 491 (549)
T ss_dssp CG--GGCTTCCEEECCSSCCCCCCTT
T ss_pred Cc--ccCccCCEEecCCCccCCcCHH
Confidence 63 5689999999999999987765
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2e-37 Score=302.61 Aligned_cols=411 Identities=19% Similarity=0.200 Sum_probs=321.4
Q ss_pred CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657 2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81 (456)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 81 (456)
.++|.+++..+..+.+ +++|++|++++|.++.+.++.|.++++|++|++++|.++ .+|.. .+++|++|++++|.++
T Consensus 28 Ls~n~i~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~ 103 (520)
T 2z7x_B 28 ISQNYISELWTSDILS-LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFD 103 (520)
T ss_dssp CCSSCCCCCCHHHHTT-CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCS
T ss_pred CCCCcccccChhhccc-cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccc
Confidence 4688999988899999 999999999999999987789999999999999999998 55555 8999999999999998
Q ss_pred c-ccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccc--eEEeccCccc--ccccccCcCCC---------------
Q 048657 82 G-SISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRL--KFFYAENNQI--NAEITQSHSLI--------------- 141 (456)
Q Consensus 82 ~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~l~l~~~~~--~~~~~~~~~~~--------------- 141 (456)
+ .+|. .+.++++|++|++++|.+.. ..+..+++| +.+++++|.+ .......+..+
T Consensus 104 ~~~~p~-~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~ 178 (520)
T 2z7x_B 104 ALPICK-EFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178 (520)
T ss_dssp SCCCCG-GGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCC
T ss_pred cccchh-hhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcch
Confidence 4 2444 78999999999999998863 345667777 9999999887 33333222221
Q ss_pred --------CCccccceeeccCCCCC-----CCCchHHhhcCCCccEEEecCcccccccchhhhh--ccccceeeeecccC
Q 048657 142 --------PPKFQLSRLSLSSGYED-----GVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLE--NNTKLIQLSVVNDS 206 (456)
Q Consensus 142 --------~~~~~L~~l~l~~~~~~-----~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~ 206 (456)
....+|+.+++..+... .......+..+++|+.++++++.+.+........ ..++|++|++++|.
T Consensus 179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 258 (520)
T 2z7x_B 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258 (520)
T ss_dssp CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred hhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc
Confidence 23456677766443210 0011235677889999999888776543332221 34689999999999
Q ss_pred cCCCCCcCc-----cCCccccEEeCCCCccCCCCc-hhhhcc--CCcceEEEccCCccCCCccccccCCCCCcEEeccCC
Q 048657 207 LAGPFRLPI-----HSHKQLRLLDISTNNFRGHIP-VEIGDV--LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 278 (456)
Q Consensus 207 ~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~-~~~~~~--~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (456)
+.+.++..+ ..++.|+.++++++.+ .+| ..+... ..+++.++++++.+.... ....+++|++|++++|
T Consensus 259 l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNN 334 (520)
T ss_dssp EESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred ccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECC
Confidence 887777777 8899999999999887 455 333332 257999999999876432 1268899999999999
Q ss_pred cCCCcccchhhcCCCcccEEEccCCcccc--cccccccccccccEEEccCccccccccc-cccCCCCCcEEEcCCCcCcc
Q 048657 279 HLTGEIPEHLAVGCVNLESLALSNNNLEG--HMFSRNFNLANLKLLQLEGNRFVGEIPQ-SLSKCSSLEGLHLNNNSLSG 355 (456)
Q Consensus 279 ~l~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~ 355 (456)
.+.+..+..+ ..+++|++|++++|++.+ ..+..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|.+++
T Consensus 335 ~l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 335 LLTDTVFENC-GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp CCCTTTTTTC-CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred ccChhhhhhh-ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 9985566554 479999999999999986 3446678899999999999999864555 47889999999999999987
Q ss_pred ccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCccc-ccccccEEEccCcccCCCCC
Q 048657 356 RIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF-HPLSIKQVHLSKNMLHGQLK 429 (456)
Q Consensus 356 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~l~l~~~~~~~~~~ 429 (456)
..+..+. ++|+.|++++|.++ .+|..+..+++|+.|++++|+++..+...+ ..++|+++++++|++.+..+
T Consensus 414 ~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 414 TIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred chhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 7776664 79999999999998 556666799999999999999997666534 37899999999999975544
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.6e-36 Score=300.67 Aligned_cols=436 Identities=24% Similarity=0.241 Sum_probs=301.4
Q ss_pred CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657 2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81 (456)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 81 (456)
+++|.+++..+.+|.+ +++|++|+|++|.++.+++++|.++++|++|+|++|++++..+.+|.++++|++|++++|+++
T Consensus 59 Ls~N~i~~l~~~~f~~-l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~ 137 (635)
T 4g8a_A 59 LSFNPLRHLGSYSFFS-FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 137 (635)
T ss_dssp CTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC
T ss_pred eeCCCCCCCCHHHHhC-CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC
Confidence 4688888888888888 999999999999999998888999999999999999998677778999999999999999998
Q ss_pred cccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCC--------------------
Q 048657 82 GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLI-------------------- 141 (456)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~-------------------- 141 (456)
.++...+.++++|++|++++|.+.....+..+..+++|++|++++|.+.......+..+
T Consensus 138 -~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i 216 (635)
T 4g8a_A 138 -SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 216 (635)
T ss_dssp -CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred -CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccccc
Confidence 67776789999999999999988744455677888999999999998765432211110
Q ss_pred ----CCccccceeeccCCCCCCCCchHHhhcC------------------------------------------------
Q 048657 142 ----PPKFQLSRLSLSSGYEDGVTFPKFLYHQ------------------------------------------------ 169 (456)
Q Consensus 142 ----~~~~~L~~l~l~~~~~~~~~~~~~l~~~------------------------------------------------ 169 (456)
.....++.+++.............+..+
T Consensus 217 ~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 296 (635)
T 4g8a_A 217 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 296 (635)
T ss_dssp CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE
T ss_pred CcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccccc
Confidence 0001122222211110000011111112
Q ss_pred ---------CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhh
Q 048657 170 ---------HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIG 240 (456)
Q Consensus 170 ---------~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 240 (456)
.+++.+++.++.+.... . ......++.+++.++.+..... ..++.++.+++..+.... .+ ..
T Consensus 297 ~~~~~~~~~~~l~~l~~~~~~~~~~~-~--~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~-~~-~~- 367 (635)
T 4g8a_A 297 GIIDLFNCLTNVSSFSLVSVTIERVK-D--FSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGN-AF-SE- 367 (635)
T ss_dssp ECTTTTGGGTTCSEEEEESCEEEECG-G--GGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCC-BC-CC-
T ss_pred chhhhhhhhccccccccccccccccc-c--cccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCC-Cc-cc-
Confidence 22223333222221110 0 1233445555555554443222 233455555555554331 11 11
Q ss_pred ccCCcceEEEccCCccCC--CccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccc-cccccccc
Q 048657 241 DVLPSLYVFNNSMNALDG--SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHM-FSRNFNLA 317 (456)
Q Consensus 241 ~~~~~L~~l~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~ 317 (456)
..+++|+.++++.+.+.. ..+.....+.+++.+++..+... ..+.. +..+++|+.+++..+...... ...+..++
T Consensus 368 ~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 368 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSC-CTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred ccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccccc-ccccccccchhhhhcccccccccccccccc
Confidence 126677777777776542 23444556777788887777554 33322 235778888888877655433 34466788
Q ss_pred cccEEEccCccccccccccccCCCCCcEEEcCCCcCc-cccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeC
Q 048657 318 NLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS-GRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDI 396 (456)
Q Consensus 318 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 396 (456)
+++.++++.|.+....+..+..++.++.|++++|.+. ...|+.+..+++|++|++++|++++..+..|..+++|+.|++
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 8999999999988777888888999999999998744 457788999999999999999999888899999999999999
Q ss_pred cCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCC-CcceEEEccCcccCC
Q 048657 397 SDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNC-SSLVTLDLSYNRLNG 451 (456)
Q Consensus 397 ~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~ 451 (456)
++|++++.++..+. +++|++|++++|++.+ ++.+.|..+ ++|+.|++++|++.-
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCB-CCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCC-CCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99999988777665 6899999999999975 444447777 689999999998753
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.7e-35 Score=282.83 Aligned_cols=357 Identities=19% Similarity=0.185 Sum_probs=232.0
Q ss_pred CCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccc-cchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccE
Q 048657 19 MPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRG-SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEE 97 (456)
Q Consensus 19 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~ 97 (456)
.++|++|+|++|.++.+.+..|.++++|++|++++|.+.+ ..+..|.++++|++|++++|.++ .+....+.++++|++
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEV 107 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC-EECTTTTTTCTTCCE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC-ccChhhccCcccCCE
Confidence 3689999999999999877899999999999999998863 44678999999999999999998 554448999999999
Q ss_pred EEcCCceeeec-cCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEE
Q 048657 98 LMLSNNHFQIP-ISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVD 176 (456)
Q Consensus 98 L~l~~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~ 176 (456)
|++++|.+... .....+..+++|++|++++|.+..... ...+..+++|+.|+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---------------------------~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP---------------------------ASFFLNMRRFHVLD 160 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCC---------------------------CGGGGGCTTCCEEE
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCc---------------------------ccccCCCCcccEEe
Confidence 99999998732 223447889999999999988753211 12366788999999
Q ss_pred ecCcccccccchhhhh-ccccceeeeecccCcCCCCCcC--------ccCCccccEEeCCCCccCCCCchhhhcc--CCc
Q 048657 177 LSHIKMNGEFPTWLLE-NNTKLIQLSVVNDSLAGPFRLP--------IHSHKQLRLLDISTNNFRGHIPVEIGDV--LPS 245 (456)
Q Consensus 177 l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~ 245 (456)
+++|.+.+..+..+.. ....++.++++.+.+....... +..+++|+.|++++|.+.+..+..+... .++
T Consensus 161 L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 240 (455)
T 3v47_A 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240 (455)
T ss_dssp CTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCC
T ss_pred CCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccc
Confidence 9999887665554322 2268899999988877644433 3356899999999999886666655543 378
Q ss_pred ceEEEccCCccCCCcc----------cccc--CCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccc
Q 048657 246 LYVFNNSMNALDGSIP----------SSFG--NMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRN 313 (456)
Q Consensus 246 L~~l~l~~~~~~~~~~----------~~l~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 313 (456)
++.++++.+...+... ..+. ..++|+.|++++|.+. ......+..+++|++|++++|.+.+..+..+
T Consensus 241 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 319 (455)
T 3v47_A 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAF 319 (455)
T ss_dssp EEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred eeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccc-ccchhhcccCCCCCEEECCCCcccccChhHh
Confidence 9999999886543211 0011 1234555555555444 2222222344555555555555544444444
Q ss_pred cccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCe
Q 048657 314 FNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQI 393 (456)
Q Consensus 314 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 393 (456)
..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.++..+..+++|+.
T Consensus 320 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 320 WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccE
Confidence 44555555555555554333444445555555555555554444444555555555555555554444444444555555
Q ss_pred EeCcCCccCCC
Q 048657 394 LDISDNNISGS 404 (456)
Q Consensus 394 L~l~~~~l~~~ 404 (456)
|++++|++++.
T Consensus 400 L~l~~N~l~~~ 410 (455)
T 3v47_A 400 IWLHTNPWDCS 410 (455)
T ss_dssp EECCSSCBCCC
T ss_pred EEccCCCcccC
Confidence 55555555443
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.9e-35 Score=290.84 Aligned_cols=411 Identities=19% Similarity=0.196 Sum_probs=300.6
Q ss_pred CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657 2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81 (456)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 81 (456)
.++|.+++..+..+.+ +++|++|++++|.++.+.+++|.++++|++|++++|.++ .+|.. .+++|++|++++|.++
T Consensus 59 Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~ 134 (562)
T 3a79_B 59 LSQNSISELRMPDISF-LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFD 134 (562)
T ss_dssp CCSSCCCCCCGGGTTT-CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCS
T ss_pred CCCCCccccChhhhcc-CCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCcc
Confidence 4688999888889999 999999999999999998889999999999999999998 55655 8999999999999998
Q ss_pred cccCC-CCCcCCCCccEEEcCCceeeeccCCCcccccccc--eEEeccCccc--ccccccCcCCC---------------
Q 048657 82 GSISS-SPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRL--KFFYAENNQI--NAEITQSHSLI--------------- 141 (456)
Q Consensus 82 ~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L--~~l~l~~~~~--~~~~~~~~~~~--------------- 141 (456)
.++. ..+.++++|++|++++|.+.. . .+..++++ +.+++++|.+ .......+..+
T Consensus 135 -~l~~p~~~~~l~~L~~L~L~~n~l~~-~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~ 209 (562)
T 3a79_B 135 -VLPVCKEFGNLTKLTFLGLSAAKFRQ-L---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLF 209 (562)
T ss_dssp -BCCCCGGGGGCTTCCEEEEECSBCCT-T---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCC
T ss_pred -ccCchHhhcccCcccEEecCCCcccc-C---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccch
Confidence 5542 478999999999999998863 2 34444555 9999999887 43322222211
Q ss_pred --------CCccccceeeccCCCCC---CCCchHHhhcCCCccEEEecCcccccccchhh--hhccccceeeeecccCcC
Q 048657 142 --------PPKFQLSRLSLSSGYED---GVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWL--LENNTKLIQLSVVNDSLA 208 (456)
Q Consensus 142 --------~~~~~L~~l~l~~~~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~ 208 (456)
....+|+.+++...... .......+...++++.+++.++.+.+...... ....++|++|++++|.+.
T Consensus 210 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 289 (562)
T 3a79_B 210 SVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289 (562)
T ss_dssp CCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEEC
T ss_pred hhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEee
Confidence 12335566655433211 01122345566777777777665543222111 123358999999999988
Q ss_pred CCCCcCc-----cCCccccEEeCCCCccCCCCchh-hhcc--CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcC
Q 048657 209 GPFRLPI-----HSHKQLRLLDISTNNFRGHIPVE-IGDV--LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 280 (456)
Q Consensus 209 ~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~-~~~~--~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 280 (456)
+.++..+ ..++.|+.+++..+.+ .+|.. .... ..+++.++++.+.+.... ....+++|++|++++|.+
T Consensus 290 ~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 290 ERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp SCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCC
T ss_pred ccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCcc
Confidence 6666665 6667777777766665 34422 2221 256999999988775322 126788999999999988
Q ss_pred CCcccchhhcCCCcccEEEccCCcccccc--cccccccccccEEEccCccccccccc-cccCCCCCcEEEcCCCcCcccc
Q 048657 281 TGEIPEHLAVGCVNLESLALSNNNLEGHM--FSRNFNLANLKLLQLEGNRFVGEIPQ-SLSKCSSLEGLHLNNNSLSGRI 357 (456)
Q Consensus 281 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~ 357 (456)
.+..+..+ ..+++|++|++++|++.+.. +..+..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+++..
T Consensus 366 ~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 366 TDSVFQGC-STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444 (562)
T ss_dssp CTTTTTTC-CSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred ccchhhhh-cccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch
Confidence 85455443 57899999999999888633 35577889999999999999863444 4778899999999999988666
Q ss_pred CccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCccc-ccccccEEEccCcccCCCCC
Q 048657 358 PRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF-HPLSIKQVHLSKNMLHGQLK 429 (456)
Q Consensus 358 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~l~l~~~~~~~~~~ 429 (456)
+..+. ++|+.|++++|.++. +|..+..+++|+.|++++|+++..+...+ ..++|+++++++|++.+..+
T Consensus 445 ~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 445 FRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp GSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred hhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 66554 789999999999984 45555589999999999999987666523 47889999999998865443
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.3e-34 Score=275.39 Aligned_cols=345 Identities=24% Similarity=0.302 Sum_probs=261.0
Q ss_pred CCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEE
Q 048657 19 MPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEEL 98 (456)
Q Consensus 19 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L 98 (456)
++++++|+++++.++.++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.++ .++. +.++++|++|
T Consensus 45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCEE
T ss_pred hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCEE
Confidence 568999999999888776 48889999999999999885543 888999999999999888 5554 7889999999
Q ss_pred EcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEec
Q 048657 99 MLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLS 178 (456)
Q Consensus 99 ~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 178 (456)
++++|.+.. .+ .+..+++|++|++++|.+.. + ..+..+++|+.|+++
T Consensus 118 ~L~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~-----------------------------~-~~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 118 TLFNNQITD-ID--PLKNLTNLNRLELSSNTISD-----------------------------I-SALSGLTSLQQLSFG 164 (466)
T ss_dssp ECCSSCCCC-CG--GGTTCTTCSEEEEEEEEECC-----------------------------C-GGGTTCTTCSEEEEE
T ss_pred ECCCCCCCC-Ch--HHcCCCCCCEEECCCCccCC-----------------------------C-hhhccCCcccEeecC
Confidence 999998763 22 37788899999998886642 1 135677888888886
Q ss_pred CcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCC
Q 048657 179 HIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDG 258 (456)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 258 (456)
+ .+.+. +. +..+++|+.|++++|.+... ..+..+++|++|++++|.+.+..+ ...+++|+.+++++|.+.+
T Consensus 165 ~-~~~~~-~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~ 235 (466)
T 1o6v_A 165 N-QVTDL-KP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKD 235 (466)
T ss_dssp E-SCCCC-GG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC
T ss_pred C-cccCc-hh--hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCccc
Confidence 3 33222 21 56788888888888887653 246778888888888888774433 2337788888888887764
Q ss_pred CccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcccccccccccc
Q 048657 259 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLS 338 (456)
Q Consensus 259 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 338 (456)
. ..+..+++|+.|++++|.+. ..+. +..+++|++|++++|.+.+... +..+++|+.|++++|.+.+..+ +.
T Consensus 236 ~--~~l~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~ 306 (466)
T 1o6v_A 236 I--GTLASLTNLTDLDLANNQIS-NLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS 306 (466)
T ss_dssp C--GGGGGCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG
T ss_pred c--hhhhcCCCCCEEECCCCccc-cchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc
Confidence 3 45777888888888888877 3333 3467888888888888776443 6678888888888888874333 67
Q ss_pred CCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEE
Q 048657 339 KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVH 418 (456)
Q Consensus 339 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~ 418 (456)
.+++|+.|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|++++..+ ...+++|+.|+
T Consensus 307 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 381 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLG 381 (466)
T ss_dssp GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEE
T ss_pred CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEe
Confidence 78888888888888875544 67788888888888888754 467788888888888888887665 44577888888
Q ss_pred ccCcccCC
Q 048657 419 LSKNMLHG 426 (456)
Q Consensus 419 l~~~~~~~ 426 (456)
+++|.+++
T Consensus 382 l~~n~~~~ 389 (466)
T 1o6v_A 382 LNDQAWTN 389 (466)
T ss_dssp CCCEEEEC
T ss_pred ccCCcccC
Confidence 88888864
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.5e-34 Score=284.61 Aligned_cols=430 Identities=20% Similarity=0.176 Sum_probs=295.2
Q ss_pred hhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCC
Q 048657 10 SFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPL 89 (456)
Q Consensus 10 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~ 89 (456)
++|+.++. ++++|+|++|.++.+++.+|.++++|++|+|++|.+++..+.+|.++++|++|++++|+++ .++...+
T Consensus 45 ~vP~~lp~---~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f 120 (635)
T 4g8a_A 45 KIPDNLPF---STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAF 120 (635)
T ss_dssp SCCSSSCT---TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGG
T ss_pred ccCCCCCc---CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHh
Confidence 34544433 7999999999999999889999999999999999999777889999999999999999999 7887688
Q ss_pred cCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcC
Q 048657 90 VHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQ 169 (456)
Q Consensus 90 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~ 169 (456)
.++++|++|++++|.+. ..+...+..+++|+.|++++|.+...... .......+|++|++..+..... .+..+..+
T Consensus 121 ~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~--~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L 196 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP--EYFSNLTNLEHLDLSSNKIQSI-YCTDLRVL 196 (635)
T ss_dssp TTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCC--GGGGGCTTCCEEECCSSCCCEE-CGGGGHHH
T ss_pred cCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCc--hhhccchhhhhhcccCcccccc-ccccccch
Confidence 99999999999999987 45566788999999999999988643211 1123345788888866543221 12222221
Q ss_pred C----CccEEEecCccccc-----------------------ccchhhhhccccceeeeecccCc---------------
Q 048657 170 H----DLEYVDLSHIKMNG-----------------------EFPTWLLENNTKLIQLSVVNDSL--------------- 207 (456)
Q Consensus 170 ~----~L~~L~l~~~~~~~-----------------------~~~~~~~~~~~~L~~L~l~~~~~--------------- 207 (456)
. ....++++.+.+.. ......+..+..++...+.....
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 276 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 276 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred hhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence 1 12234444433321 11111122222222222211000
Q ss_pred ---------------CC---CCCcCccCCccc----------------------cEEeCCCCccCCCCchhhhccCCcce
Q 048657 208 ---------------AG---PFRLPIHSHKQL----------------------RLLDISTNNFRGHIPVEIGDVLPSLY 247 (456)
Q Consensus 208 ---------------~~---~~~~~l~~~~~L----------------------~~L~l~~~~~~~~~~~~~~~~~~~L~ 247 (456)
.. .....+.....+ +.|++.++.+. .++. ..+..++
T Consensus 277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~---~~l~~L~ 352 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG-QFPT---LKLKSLK 352 (635)
T ss_dssp GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEES-SCCC---CBCTTCC
T ss_pred cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhccccccc-CcCc---ccchhhh
Confidence 00 000111222233 33444433332 1111 1133444
Q ss_pred EEEccCCccCCCccccccCCCCCcEEeccCCcCCCcc-cchhhcCCCcccEEEccCCcccccccccccccccccEEEccC
Q 048657 248 VFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI-PEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEG 326 (456)
Q Consensus 248 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 326 (456)
.+.+..+.... +.....+++|+.++++++.+.... .........+|+.+++..+..... ...+..+++|+.+++..
T Consensus 353 ~l~l~~n~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~ 429 (635)
T 4g8a_A 353 RLTFTSNKGGN--AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQH 429 (635)
T ss_dssp EEEEESCCSCC--BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTT
T ss_pred hcccccccCCC--Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhh
Confidence 55554443322 223345778888888887664221 112223567888888888766543 34456788999999988
Q ss_pred ccccccc-cccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCccc-ccCchhccCCCCCCeEeCcCCccCCC
Q 048657 327 NRFVGEI-PQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLE-GLIPVEFCQLDSLQILDISDNNISGS 404 (456)
Q Consensus 327 ~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~l~~~ 404 (456)
+...... ...+..+++++.++++.|.+....+..+..+++++.|++++|.+. ...+..+..+++|+.|++++|++++.
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l 509 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCc
Confidence 8765433 356788999999999999998888889999999999999999754 45678899999999999999999988
Q ss_pred CCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCCC
Q 048657 405 LPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455 (456)
Q Consensus 405 ~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~ 455 (456)
++..+. +++|++|++++|++. .++...|..+++|+.|++++|++++..|+
T Consensus 510 ~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 560 (635)
T 4g8a_A 510 SPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560 (635)
T ss_dssp CTTTTTTCTTCCEEECTTSCCC-BCCCGGGTTCTTCCEEECTTSCCCBCCSS
T ss_pred ChHHHcCCCCCCEEECCCCcCC-CCChhHHhCCCCCCEEECCCCcCCCCCHH
Confidence 877765 789999999999996 56666799999999999999999988775
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.8e-34 Score=271.67 Aligned_cols=378 Identities=21% Similarity=0.239 Sum_probs=252.5
Q ss_pred CCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCC-------------cEEeccCCccccccC
Q 048657 19 MPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSL-------------RILDVSSNQLTGSIS 85 (456)
Q Consensus 19 ~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~i~~~~~ 85 (456)
.++|++|+++++.++.+| ..++++++|++|++++|.+.+..|..+.++++| ++|++++|.++ .+|
T Consensus 10 ~~~L~~L~l~~n~l~~iP-~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMP-VEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCC
T ss_pred cccchhhhcccCchhhCC-hhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCC
Confidence 578899999988887777 478889999999999888887888888777654 89999999888 566
Q ss_pred CCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHH
Q 048657 86 SSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKF 165 (456)
Q Consensus 86 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 165 (456)
. + .++|++|++++|.+.. .+ . ..++|+.+++++|.+..... ...+|++|++..+.... ++ .
T Consensus 88 ~--~--~~~L~~L~l~~n~l~~-lp-~---~~~~L~~L~l~~n~l~~l~~-------~~~~L~~L~L~~n~l~~--lp-~ 148 (454)
T 1jl5_A 88 E--L--PPHLESLVASCNSLTE-LP-E---LPQSLKSLLVDNNNLKALSD-------LPPLLEYLGVSNNQLEK--LP-E 148 (454)
T ss_dssp S--C--CTTCSEEECCSSCCSS-CC-C---CCTTCCEEECCSSCCSCCCS-------CCTTCCEEECCSSCCSS--CC-C
T ss_pred C--C--cCCCCEEEccCCcCCc-cc-c---ccCCCcEEECCCCccCcccC-------CCCCCCEEECcCCCCCC--Cc-c
Confidence 5 2 3789999999988773 22 1 24789999999887764221 11588889886665443 44 4
Q ss_pred hhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCc
Q 048657 166 LYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPS 245 (456)
Q Consensus 166 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 245 (456)
+..+++|+.|++++|.+.+ ++. ...+|++|++++|.+... + .++.+++|+.|++++|.+. .+|. ..++
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~----~~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~ 216 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPD----LPPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLK-KLPD----LPLS 216 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCS-SCCC----CCTT
T ss_pred cCCCCCCCEEECCCCcCcc-cCC----CcccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCC-cCCC----CcCc
Confidence 7888999999999998764 443 335899999999988773 3 5889999999999999887 3443 2468
Q ss_pred ceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEcc
Q 048657 246 LYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLE 325 (456)
Q Consensus 246 L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 325 (456)
|+.+++++|.+. .+| .+..+++|++|++++|.+. .++. .+++|++|++++|.+.+.. . .+++|+.|+++
T Consensus 217 L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~l~-~---~~~~L~~L~ls 285 (454)
T 1jl5_A 217 LESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTDLP-E---LPQSLTFLDVS 285 (454)
T ss_dssp CCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECC
T ss_pred ccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCcccccC-c---ccCcCCEEECc
Confidence 999999999887 566 4889999999999999887 4553 3578999999999887633 2 24789999999
Q ss_pred CccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCC
Q 048657 326 GNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSL 405 (456)
Q Consensus 326 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 405 (456)
+|.+++ ++. -.++|++|++++|.+++ ++. ..++|++|++++|.+++. |.. +++|+.|++++|+++..+
T Consensus 286 ~N~l~~-l~~---~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~l-p~~---~~~L~~L~L~~N~l~~lp 353 (454)
T 1jl5_A 286 ENIFSG-LSE---LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIEL-PAL---PPRLERLIASFNHLAEVP 353 (454)
T ss_dssp SSCCSE-ESC---CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSCCC
T ss_pred CCccCc-ccC---cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCccccc-ccc---CCcCCEEECCCCcccccc
Confidence 999874 221 12689999999998873 222 125899999999998863 332 578999999999998654
Q ss_pred CcccccccccEEEccCcccCC--CCCcccccCC-------------CcceEEEccCcccCC--CCCCC
Q 048657 406 PACFHPLSIKQVHLSKNMLHG--QLKRGTFFNC-------------SSLVTLDLSYNRLNG--SIPDW 456 (456)
Q Consensus 406 ~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~~~-------------~~L~~L~l~~~~l~~--~~p~~ 456 (456)
. .+++|++|++++|++.+ .+|.. +.++ ++|+.|++++|++++ ++|.|
T Consensus 354 ~---~l~~L~~L~L~~N~l~~l~~ip~~-l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 354 E---LPQNLKQLHVEYNPLREFPDIPES-VEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp C---CCTTCCEEECCSSCCSSCCCCCTT-CCEEECCC-------------------------------
T ss_pred c---hhhhccEEECCCCCCCcCCCChHH-HHhhhhcccccccccccCcCCEEECCCCcCCccccchhh
Confidence 4 46889999999999976 56655 5555 789999999999987 78754
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.2e-32 Score=264.50 Aligned_cols=339 Identities=25% Similarity=0.334 Sum_probs=266.3
Q ss_pred ccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcccc
Q 048657 3 TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTG 82 (456)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 82 (456)
+++.+.. ++ .+.. +++|++|++++|.++.++. +.++++|++|++++|.+.+..+ +.++++|++|++++|.++
T Consensus 54 ~~~~i~~-l~-~~~~-l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~- 125 (466)
T 1o6v_A 54 DRLGIKS-ID-GVEY-LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT- 125 (466)
T ss_dssp CSSCCCC-CT-TGGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred CCCCCcc-Cc-chhh-hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCC-
Confidence 3444443 33 4677 9999999999999988875 8999999999999999985544 999999999999999998
Q ss_pred ccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCc
Q 048657 83 SISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTF 162 (456)
Q Consensus 83 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 162 (456)
.++. +.++++|++|++++|.+.. ...+..+++|+.+++++ .+. ..
T Consensus 126 ~~~~--~~~l~~L~~L~l~~n~l~~---~~~~~~l~~L~~L~l~~-~~~-----------------------------~~ 170 (466)
T 1o6v_A 126 DIDP--LKNLTNLNRLELSSNTISD---ISALSGLTSLQQLSFGN-QVT-----------------------------DL 170 (466)
T ss_dssp CCGG--GTTCTTCSEEEEEEEEECC---CGGGTTCTTCSEEEEEE-SCC-----------------------------CC
T ss_pred CChH--HcCCCCCCEEECCCCccCC---ChhhccCCcccEeecCC-ccc-----------------------------Cc
Confidence 5554 8899999999999998873 23577889999998863 221 11
Q ss_pred hHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhcc
Q 048657 163 PKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDV 242 (456)
Q Consensus 163 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 242 (456)
..+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+....+ ++.+++|+.|++++|.+.+ ++ . ...
T Consensus 171 -~~~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~-l~~ 241 (466)
T 1o6v_A 171 -KPLANLTTLERLDISSNKVSDI-S--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG-T-LAS 241 (466)
T ss_dssp -GGGTTCTTCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG-G-GGG
T ss_pred -hhhccCCCCCEEECcCCcCCCC-h--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch-h-hhc
Confidence 1256677888888888876543 2 24677888888888887766443 6678888999998888763 32 2 234
Q ss_pred CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657 243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL 322 (456)
Q Consensus 243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 322 (456)
+++|+.+++++|.+.+..+ +..+++|++|++++|.+. .++. ...+++|++|++++|.+.+..+ +..+++|+.|
T Consensus 242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 7889999999988875543 788899999999999887 4444 4468899999999998876543 6688999999
Q ss_pred EccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657 323 QLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 323 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 402 (456)
++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..| +..+++|+.|++++|+++
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 999999885544 67889999999999988754 468889999999999999987665 788999999999999988
Q ss_pred CCCC
Q 048657 403 GSLP 406 (456)
Q Consensus 403 ~~~~ 406 (456)
+.+.
T Consensus 389 ~~p~ 392 (466)
T 1o6v_A 389 NAPV 392 (466)
T ss_dssp CCCB
T ss_pred CCch
Confidence 7543
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=273.10 Aligned_cols=320 Identities=18% Similarity=0.184 Sum_probs=185.5
Q ss_pred cEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCC
Q 048657 23 KYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSN 102 (456)
Q Consensus 23 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~ 102 (456)
+.++.++..++.+|. .+. +++++|++++|.+++..+..|.++++|++|++++|.++ .+....+.++++|++|++++
T Consensus 14 ~~v~c~~~~l~~ip~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFVAVPE-GIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCSSCCS-CCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcCCC-CCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCC
Confidence 566777666777764 332 57788888888887666777888888888888888877 45444777888888888888
Q ss_pred ceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCccc
Q 048657 103 NHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKM 182 (456)
Q Consensus 103 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 182 (456)
|.+. ..+...+..+++|+.|++++|.+... .+..+..+++|+.|++++|.+
T Consensus 90 n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~----------------------------~~~~~~~l~~L~~L~l~~n~l 140 (477)
T 2id5_A 90 NRLK-LIPLGVFTGLSNLTKLDISENKIVIL----------------------------LDYMFQDLYNLKSLEVGDNDL 140 (477)
T ss_dssp SCCC-SCCTTSSTTCTTCCEEECTTSCCCEE----------------------------CTTTTTTCTTCCEEEECCTTC
T ss_pred CcCC-ccCcccccCCCCCCEEECCCCccccC----------------------------ChhHccccccCCEEECCCCcc
Confidence 8776 44445566677777777777665321 122344566777777777665
Q ss_pred ccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccc
Q 048657 183 NGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPS 262 (456)
Q Consensus 183 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 262 (456)
....+.. +..+++|++|++++|.+.......+.. +++|+.++++.+.+.+..+.
T Consensus 141 ~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~-------------------------l~~L~~L~l~~n~i~~~~~~ 194 (477)
T 2id5_A 141 VYISHRA-FSGLNSLEQLTLEKCNLTSIPTEALSH-------------------------LHGLIVLRLRHLNINAIRDY 194 (477)
T ss_dssp CEECTTS-STTCTTCCEEEEESCCCSSCCHHHHTT-------------------------CTTCCEEEEESCCCCEECTT
T ss_pred ceeChhh-ccCCCCCCEEECCCCcCcccChhHhcc-------------------------cCCCcEEeCCCCcCcEeChh
Confidence 4332222 234445555555544444333333444 44555555555544443344
Q ss_pred cccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCC
Q 048657 263 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSS 342 (456)
Q Consensus 263 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 342 (456)
.+..+++|+.|+++++...+.++...+ ...+|++|++++|.+.......+..+++|+.|++++|.+.+..+..+..+++
T Consensus 195 ~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (477)
T 2id5_A 195 SFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273 (477)
T ss_dssp CSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTT
T ss_pred hcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccccc
Confidence 455555555555555544334443332 2335555555555555444444455555666666655555444444555556
Q ss_pred CcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657 343 LEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 343 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 402 (456)
|++|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++.
T Consensus 274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 666666666555555555555666666666666555555555555556666666655554
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.2e-33 Score=269.11 Aligned_cols=356 Identities=19% Similarity=0.208 Sum_probs=222.3
Q ss_pred chhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCC
Q 048657 9 TSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSP 88 (456)
Q Consensus 9 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 88 (456)
+..+..+++ +++|++|++++|.++.++ .+..+++|++|++++|.+++. + +..+++|++|++++|.++ .++
T Consensus 32 ~~~~~~~~~-l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~--- 101 (457)
T 3bz5_A 32 ATDTISEEQ-LATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD--- 101 (457)
T ss_dssp TTSEEEHHH-HTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC---
T ss_pred cccccChhH-cCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee---
Confidence 333445666 888888888888877765 578888888888888888753 3 777888888888888887 443
Q ss_pred CcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhc
Q 048657 89 LVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYH 168 (456)
Q Consensus 89 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~ 168 (456)
+.++++|++|++++|.+.. . .+..+++|+.|++++|.+... .+..
T Consensus 102 ~~~l~~L~~L~L~~N~l~~-l---~~~~l~~L~~L~l~~N~l~~l-------------------------------~l~~ 146 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTK-L---DVSQNPLLTYLNCARNTLTEI-------------------------------DVSH 146 (457)
T ss_dssp CTTCTTCCEEECCSSCCSC-C---CCTTCTTCCEEECTTSCCSCC-------------------------------CCTT
T ss_pred cCCCCcCCEEECCCCcCCe-e---cCCCCCcCCEEECCCCcccee-------------------------------cccc
Confidence 6778888888888887763 2 267778888888887766421 1345
Q ss_pred CCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceE
Q 048657 169 QHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYV 248 (456)
Q Consensus 169 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 248 (456)
+++|+.|++++|...+.++ +..+++|+.|++++|.+.... +..+++|+.|++++|.+.+ ++ + ..+++|+.
T Consensus 147 l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~-~~--l-~~l~~L~~ 216 (457)
T 3bz5_A 147 NTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITK-LD--L-NQNIQLTF 216 (457)
T ss_dssp CTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSC-CC--C-TTCTTCSE
T ss_pred CCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCe-ec--c-ccCCCCCE
Confidence 6788888888885433332 457788888888888877632 6778888888888888774 32 2 23678888
Q ss_pred EEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcc
Q 048657 249 FNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNR 328 (456)
Q Consensus 249 l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 328 (456)
++++.|.+.+ +| +..+++|+.|++++|.+. .++. ..+++|+.++++++.+ +.|++++|.
T Consensus 217 L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~-~~~~---~~l~~L~~L~l~~n~L--------------~~L~l~~n~ 275 (457)
T 3bz5_A 217 LDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLT-ELDV---STLSKLTTLHCIQTDL--------------LEIDLTHNT 275 (457)
T ss_dssp EECCSSCCSC-CC--CTTCTTCSEEECCSSCCS-CCCC---TTCTTCCEEECTTCCC--------------SCCCCTTCT
T ss_pred EECcCCcccc-cC--ccccCCCCEEEeeCCcCC-CcCH---HHCCCCCEEeccCCCC--------------CEEECCCCc
Confidence 8888888876 44 777888888888888877 3332 2456666666555433 333333333
Q ss_pred ccccccccccCCCCCcEEEcCCCcCccccCc--------cccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCc
Q 048657 329 FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPR--------WLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNN 400 (456)
Q Consensus 329 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 400 (456)
..+..| +..+++|+.|++++|...+.+|. .+.++++|++|++++|.+++. .+..+++|+.|++++|+
T Consensus 276 ~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 276 QLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAH 350 (457)
T ss_dssp TCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSC
T ss_pred cCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCC
Confidence 322222 23344444444444432222211 133345555566665555543 24555556666666555
Q ss_pred cCCCCCcc------------cccccccEEEccCcccCCCCCcccccCCCcceEEEcc
Q 048657 401 ISGSLPAC------------FHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLS 445 (456)
Q Consensus 401 l~~~~~~~------------~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 445 (456)
+++...-. .....+..+++++|.++|.+|...+....++.....+
T Consensus 351 l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~~~~~ 407 (457)
T 3bz5_A 351 IQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPG 407 (457)
T ss_dssp CCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCBCTTSCCCEEEES
T ss_pred CCCccccccccccCCcEEecceeeecCccccccCcEEEEcChhHhcccCceeeccCC
Confidence 55421000 0123455556666666666665544444444444333
No 32
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.7e-32 Score=250.66 Aligned_cols=151 Identities=22% Similarity=0.290 Sum_probs=77.0
Q ss_pred ccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCC
Q 048657 264 FGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSL 343 (456)
Q Consensus 264 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 343 (456)
+..+++|+.++++++.+. ..+. ...+++|++|++++|.+.+... +..+++|++|++++|.+.+ . ..+..+++|
T Consensus 195 ~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L 267 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKL 267 (347)
T ss_dssp GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred ccCCCccceeecccCCCC-CCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCc
Confidence 334444444444444443 2221 2234455555555554443322 3445555555555555542 1 234555566
Q ss_pred cEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcc
Q 048657 344 EGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNM 423 (456)
Q Consensus 344 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~ 423 (456)
++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+ ...+++|+++++++|.
T Consensus 268 ~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 268 KMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred CEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence 6666666655532 345556666666666666655555555666666666666666655443 3335566666666665
Q ss_pred c
Q 048657 424 L 424 (456)
Q Consensus 424 ~ 424 (456)
+
T Consensus 345 i 345 (347)
T 4fmz_A 345 I 345 (347)
T ss_dssp -
T ss_pred c
Confidence 4
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.4e-32 Score=253.21 Aligned_cols=309 Identities=21% Similarity=0.252 Sum_probs=182.8
Q ss_pred CCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccce
Q 048657 42 SLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLK 121 (456)
Q Consensus 42 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 121 (456)
.++++++|+++++.++...+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+. ..++..+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence 4577888888888877555556777888888888888887 565557778888888888888776 34445556666677
Q ss_pred EEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchH-HhhcCCCccEEEecCcccccccchhhhhccccceee
Q 048657 122 FFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPK-FLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQL 200 (456)
Q Consensus 122 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 200 (456)
.|++++|.+.. ++. .+..+++|+.|++++|.+.+.
T Consensus 121 ~L~L~~n~l~~-----------------------------l~~~~~~~l~~L~~L~L~~n~l~~~--------------- 156 (390)
T 3o6n_A 121 VLVLERNDLSS-----------------------------LPRGIFHNTPKLTTLSMSNNNLERI--------------- 156 (390)
T ss_dssp EEECCSSCCCC-----------------------------CCTTTTTTCTTCCEEECCSSCCCBC---------------
T ss_pred EEECCCCccCc-----------------------------CCHHHhcCCCCCcEEECCCCccCcc---------------
Confidence 77766665431 111 124455666666666655422
Q ss_pred eecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcC
Q 048657 201 SVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 280 (456)
Q Consensus 201 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 280 (456)
.+..+..+++|+.|++++|.+.+ .+ ...+++|+.++++.+.+.. +...+.|++|++++|.+
T Consensus 157 ----------~~~~~~~l~~L~~L~l~~n~l~~-~~---~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 157 ----------EDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSI 217 (390)
T ss_dssp ----------CTTTTSSCTTCCEEECCSSCCSB-CC---GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCC
T ss_pred ----------ChhhccCCCCCCEEECCCCcCCc-cc---cccccccceeecccccccc-----cCCCCcceEEECCCCee
Confidence 22334445555555555555542 21 1124556666665554432 22344566666666665
Q ss_pred CCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCcc
Q 048657 281 TGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRW 360 (456)
Q Consensus 281 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 360 (456)
. .++.. .+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .++..
T Consensus 218 ~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~ 290 (390)
T 3o6n_A 218 N-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLY 290 (390)
T ss_dssp C-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECS
T ss_pred e-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcc
Confidence 5 33332 235666666666666543 34455666666666666666555556666666666666666665 33444
Q ss_pred ccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccC
Q 048657 361 LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLH 425 (456)
Q Consensus 361 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~ 425 (456)
+..+++|++|++++|.+.. .+..+..+++|+.|++++|+++... ...+++|+.|++++|++.
T Consensus 291 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 291 GQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp SSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred cCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCcc
Confidence 4556666666666666653 3444555666666666666665442 223456666666666654
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=258.37 Aligned_cols=320 Identities=19% Similarity=0.191 Sum_probs=243.1
Q ss_pred CcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEec
Q 048657 46 LQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYA 125 (456)
Q Consensus 46 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l 125 (456)
-+.++.++.+++ ..|..+. +++++|++++|.++ .++...+.++++|++|++++|.+. ...+..+..+++|+.|++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEEC
Confidence 357888888887 5566554 68999999999999 666568999999999999999887 455567778888888888
Q ss_pred cCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeeccc
Q 048657 126 ENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVND 205 (456)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 205 (456)
++|.+.... +..+..+++|+.|++++|.+...
T Consensus 88 ~~n~l~~~~----------------------------~~~~~~l~~L~~L~Ls~n~i~~~-------------------- 119 (477)
T 2id5_A 88 RSNRLKLIP----------------------------LGVFTGLSNLTKLDISENKIVIL-------------------- 119 (477)
T ss_dssp CSSCCCSCC----------------------------TTSSTTCTTCCEEECTTSCCCEE--------------------
T ss_pred CCCcCCccC----------------------------cccccCCCCCCEEECCCCccccC--------------------
Confidence 877654210 11234456666666666655432
Q ss_pred CcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCccc
Q 048657 206 SLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP 285 (456)
Q Consensus 206 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~ 285 (456)
.+..+..+++|+.|++++|.+.+..+..+ ..+++|+.|+++.|.+.+..+..+..+++|+.|+++++.+. .++
T Consensus 120 -----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-~~~ 192 (477)
T 2id5_A 120 -----LDYMFQDLYNLKSLEVGDNDLVYISHRAF-SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIR 192 (477)
T ss_dssp -----CTTTTTTCTTCCEEEECCTTCCEECTTSS-TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC-EEC
T ss_pred -----ChhHccccccCCEEECCCCccceeChhhc-cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc-EeC
Confidence 23344556666666666666653323233 33677777777777777655667888999999999999887 555
Q ss_pred chhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCC
Q 048657 286 EHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLT 365 (456)
Q Consensus 286 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 365 (456)
...+..+++|++|++++|...+..+.......+|++|++++|.+....+..+..+++|+.|++++|.+++..+..+..++
T Consensus 193 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 272 (477)
T 2id5_A 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272 (477)
T ss_dssp TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCT
T ss_pred hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccc
Confidence 55566789999999999877665555555566899999999998854446788899999999999999877778889999
Q ss_pred CCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccC
Q 048657 366 WLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLH 425 (456)
Q Consensus 366 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~ 425 (456)
+|++|++++|.+.+..+..|..+++|+.|++++|.+++.++..+. +++|++|++++|.+.
T Consensus 273 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred cCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 999999999999888888899999999999999999887766654 678999999998875
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.5e-32 Score=255.84 Aligned_cols=388 Identities=23% Similarity=0.250 Sum_probs=249.2
Q ss_pred CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCC-------------cEEEcccCcccccchhhhhcCC
Q 048657 2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHL-------------QELYIDNNDLRGSLPWCLANMT 68 (456)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L-------------~~L~l~~~~~~~~~~~~~~~l~ 68 (456)
.++|.+ +.+|+++++ +++|++|++++|.+....+..++++++| ++|++++|++++ .|.. .+
T Consensus 18 l~~n~l-~~iP~~i~~-L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~ 91 (454)
T 1jl5_A 18 RHSSNL-TEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PP 91 (454)
T ss_dssp ------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CT
T ss_pred cccCch-hhCChhHhc-ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cC
Confidence 457888 899999999 9999999999988653333577777764 999999999884 3432 37
Q ss_pred CCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccc
Q 048657 69 SLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLS 148 (456)
Q Consensus 69 ~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~ 148 (456)
+|++|++++|.++ .++. . +++|++|++++|.+.. .+ . ..++|+.|++++|.+.... .+....+|+
T Consensus 92 ~L~~L~l~~n~l~-~lp~-~---~~~L~~L~l~~n~l~~-l~--~--~~~~L~~L~L~~n~l~~lp-----~~~~l~~L~ 156 (454)
T 1jl5_A 92 HLESLVASCNSLT-ELPE-L---PQSLKSLLVDNNNLKA-LS--D--LPPLLEYLGVSNNQLEKLP-----ELQNSSFLK 156 (454)
T ss_dssp TCSEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCSC-CC--S--CCTTCCEEECCSSCCSSCC-----CCTTCTTCC
T ss_pred CCCEEEccCCcCC-cccc-c---cCCCcEEECCCCccCc-cc--C--CCCCCCEEECcCCCCCCCc-----ccCCCCCCC
Confidence 8999999999998 4765 2 3789999999998762 11 1 1268999999999887521 356677899
Q ss_pred eeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCC
Q 048657 149 RLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDIST 228 (456)
Q Consensus 149 ~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 228 (456)
++++..+.... ++.. ..+|+.|++++|.+.+ ++. +..+++|++|++.+|.+..... ..++|+.|++++
T Consensus 157 ~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~l~~-l~~--~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~ 224 (454)
T 1jl5_A 157 IIDVDNNSLKK--LPDL---PPSLEFIAAGNNQLEE-LPE--LQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGN 224 (454)
T ss_dssp EEECCSSCCSC--CCCC---CTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSSCCC----CCTTCCEEECCS
T ss_pred EEECCCCcCcc--cCCC---cccccEEECcCCcCCc-Ccc--ccCCCCCCEEECCCCcCCcCCC----CcCcccEEECcC
Confidence 99997664432 3322 3589999999998875 453 5789999999999998875322 225899999999
Q ss_pred CccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCccccc
Q 048657 229 NNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGH 308 (456)
Q Consensus 229 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 308 (456)
|.+. .+|. +. .+++|+.+++++|.+.+ +|. .+++|+.|++++|.+. .++. .+++|+++++++|.+.+.
T Consensus 225 n~l~-~lp~-~~-~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~-~l~~----~~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 225 NILE-ELPE-LQ-NLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLT-DLPE----LPQSLTFLDVSENIFSGL 292 (454)
T ss_dssp SCCS-SCCC-CT-TCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSEE
T ss_pred CcCC-cccc-cC-CCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCccc-ccCc----ccCcCCEEECcCCccCcc
Confidence 9887 6663 33 48899999999998874 443 3478999999999887 4554 247899999999988763
Q ss_pred ccccccccccccEEEccCccccccccccccCC-CCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccC
Q 048657 309 MFSRNFNLANLKLLQLEGNRFVGEIPQSLSKC-SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQ 387 (456)
Q Consensus 309 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 387 (456)
.. ..++|+.|++++|.+.+ ++ .+ ++|++|++++|.+++ +|.. +++|+.|++++|.++.. |. .
T Consensus 293 ~~----~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~l-p~---~ 355 (454)
T 1jl5_A 293 SE----LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEV-PE---L 355 (454)
T ss_dssp SC----CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---C
T ss_pred cC----cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccc-cc---h
Confidence 21 13789999999999874 22 33 589999999999884 5543 58899999999999854 33 4
Q ss_pred CCCCCeEeCcCCccCC--CCCcccc-c-------------ccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCC
Q 048657 388 LDSLQILDISDNNISG--SLPACFH-P-------------LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 451 (456)
Q Consensus 388 ~~~L~~L~l~~~~l~~--~~~~~~~-~-------------~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 451 (456)
+++|+.|++++|++++ ..+..+. . ++|++|++++|.+.+ ++. -.++++.|.+.+|.+.+
T Consensus 356 l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~-~~~----iP~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE-FPD----IPESVEDLRMNSERVVD 430 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------------------------
T ss_pred hhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCc-ccc----chhhHhheeCcCcccCC
Confidence 7899999999999988 3343332 2 689999999999965 111 12467888999999988
Q ss_pred CCCCC
Q 048657 452 SIPDW 456 (456)
Q Consensus 452 ~~p~~ 456 (456)
.+|.|
T Consensus 431 ~~~~~ 435 (454)
T 1jl5_A 431 PYEFA 435 (454)
T ss_dssp -----
T ss_pred ccccC
Confidence 87754
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.1e-30 Score=239.50 Aligned_cols=307 Identities=17% Similarity=0.262 Sum_probs=183.0
Q ss_pred cccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccc
Q 048657 39 GLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHS 118 (456)
Q Consensus 39 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 118 (456)
.+..+++|++|+++++.+.. .+ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.. ...+..++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~---~~~~~~l~ 110 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITD---ISALQNLT 110 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC---CGGGTTCT
T ss_pred cchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccC---chHHcCCC
Confidence 35567777888887777763 33 3667777777777777776 4443 6677777777777776541 12344555
Q ss_pred cceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhhccccce
Q 048657 119 RLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLI 198 (456)
Q Consensus 119 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 198 (456)
+|++|++++|.+.. ++. +..+++|+.|++++|......+.
T Consensus 111 ~L~~L~l~~n~i~~-----------------------------~~~-~~~l~~L~~L~l~~n~~~~~~~~---------- 150 (347)
T 4fmz_A 111 NLRELYLNEDNISD-----------------------------ISP-LANLTKMYSLNLGANHNLSDLSP---------- 150 (347)
T ss_dssp TCSEEECTTSCCCC-----------------------------CGG-GTTCTTCCEEECTTCTTCCCCGG----------
T ss_pred cCCEEECcCCcccC-----------------------------chh-hccCCceeEEECCCCCCcccccc----------
Confidence 55555555544321 011 23344444444444422111111
Q ss_pred eeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCC
Q 048657 199 QLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNN 278 (456)
Q Consensus 199 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 278 (456)
+.. +++|+.++++++.+.+..+ +..+++|++|++++|
T Consensus 151 ----------------~~~-------------------------l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 151 ----------------LSN-------------------------MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp ----------------GTT-------------------------CTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred ----------------hhh-------------------------CCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 122 3444444444444332211 455666777777777
Q ss_pred cCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccC
Q 048657 279 HLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIP 358 (456)
Q Consensus 279 ~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 358 (456)
.+. .++. ...+++|+.+++++|.+.+... +..+++|++|++++|.+.+. +. +..+++|++|++++|.+++.
T Consensus 188 ~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-- 258 (347)
T 4fmz_A 188 QIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQISDI-- 258 (347)
T ss_dssp CCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--
T ss_pred ccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccCCC--
Confidence 665 3333 3356777777777777665433 55677777777777777633 22 66777777777777777632
Q ss_pred ccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCC
Q 048657 359 RWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCS 437 (456)
Q Consensus 359 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~ 437 (456)
..+..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..+..+. +++|++|++++|.+.+..+ +..++
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~ 333 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLS 333 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCT
T ss_pred hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC---hhhhh
Confidence 4566777777777777777654 3466677777777777777665544433 5677777777777754333 56677
Q ss_pred cceEEEccCcccC
Q 048657 438 SLVTLDLSYNRLN 450 (456)
Q Consensus 438 ~L~~L~l~~~~l~ 450 (456)
+|+.|++++|+++
T Consensus 334 ~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 334 KMDSADFANQVIK 346 (347)
T ss_dssp TCSEESSSCC---
T ss_pred ccceeehhhhccc
Confidence 7777777777765
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=5.1e-31 Score=251.03 Aligned_cols=339 Identities=18% Similarity=0.195 Sum_probs=210.6
Q ss_pred CccccccchhhhHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657 2 STRIALNTSFLQIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81 (456)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 81 (456)
+++|.+++. | .+.. +++|++|++++|.++.++ +..+++|++|++++|.+++. + +..+++|++|++++|.++
T Consensus 49 Ls~n~l~~~-~-~l~~-l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~ 119 (457)
T 3bz5_A 49 CHNSSITDM-T-GIEK-LTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLT 119 (457)
T ss_dssp CCSSCCCCC-T-TGGG-CTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCS
T ss_pred ccCCCcccC-h-hhcc-cCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCC
Confidence 357788874 5 6888 999999999999988874 88999999999999999854 3 889999999999999998
Q ss_pred cccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCC
Q 048657 82 GSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVT 161 (456)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 161 (456)
.++ +..+++|++|++++|.+.. . .+..+++|+.+++++|...... .+....+|+.|++..+.....
T Consensus 120 -~l~---~~~l~~L~~L~l~~N~l~~-l---~l~~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~ls~n~l~~l- 185 (457)
T 3bz5_A 120 -KLD---VSQNPLLTYLNCARNTLTE-I---DVSHNTQLTELDCHLNKKITKL-----DVTPQTQLTTLDCSFNKITEL- 185 (457)
T ss_dssp -CCC---CTTCTTCCEEECTTSCCSC-C---CCTTCTTCCEEECTTCSCCCCC-----CCTTCTTCCEEECCSSCCCCC-
T ss_pred -eec---CCCCCcCCEEECCCCccce-e---ccccCCcCCEEECCCCCccccc-----ccccCCcCCEEECCCCcccee-
Confidence 453 7889999999999999874 2 3778999999999998532211 123334555555544332221
Q ss_pred chHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhc
Q 048657 162 FPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGD 241 (456)
Q Consensus 162 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 241 (456)
+ +..+++|+.|++++|.+.+. + +..+++|+.|++++|.+... + +..+++|+.|++++|.+.+ .+. .
T Consensus 186 -~--l~~l~~L~~L~l~~N~l~~~-~---l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~-~~~---~ 251 (457)
T 3bz5_A 186 -D--VSQNKLLNRLNCDTNNITKL-D---LNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTE-LDV---S 251 (457)
T ss_dssp -C--CTTCTTCCEEECCSSCCSCC-C---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CCC---T
T ss_pred -c--cccCCCCCEEECcCCcCCee-c---cccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCC-cCH---H
Confidence 1 34445555555555554432 1 23445555555555554442 1 4444555555555555442 221 1
Q ss_pred cCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccc--------cc
Q 048657 242 VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFS--------RN 313 (456)
Q Consensus 242 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~ 313 (456)
.+++|+.++++.+ +|+.+++++|...+.++. ..+++|+.|++++|...+..+. .+
T Consensus 252 ~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l 314 (457)
T 3bz5_A 252 TLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA---EGCRKIKELDVTHNTQLYLLDCQAAGITELDL 314 (457)
T ss_dssp TCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC---TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCC
T ss_pred HCCCCCEEeccCC--------------CCCEEECCCCccCCcccc---cccccCCEEECCCCcccceeccCCCcceEech
Confidence 1333333333322 233344444443333331 2455666666666643322211 13
Q ss_pred cccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCe
Q 048657 314 FNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQI 393 (456)
Q Consensus 314 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 393 (456)
..+++|+.|++++|.+++ . .+.++++|+.|++++|++++ ++.|+.|.+++|.+.+. ..+..|..
T Consensus 315 ~~~~~L~~L~L~~N~l~~-l--~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~ 378 (457)
T 3bz5_A 315 SQNPKLVYLYLNNTELTE-L--DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPK 378 (457)
T ss_dssp TTCTTCCEEECTTCCCSC-C--CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCC
T ss_pred hhcccCCEEECCCCcccc-c--ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCc
Confidence 344667777777777764 2 26667777777777776653 23455566666666543 24457888
Q ss_pred EeCcCCccCCCCCcccc
Q 048657 394 LDISDNNISGSLPACFH 410 (456)
Q Consensus 394 L~l~~~~l~~~~~~~~~ 410 (456)
+++++|++++.+|..+.
T Consensus 379 l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 379 ETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp BCCBTTBEEEECCTTCB
T ss_pred cccccCcEEEEcChhHh
Confidence 99999999988876543
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=2.4e-30 Score=242.95 Aligned_cols=311 Identities=20% Similarity=0.198 Sum_probs=245.4
Q ss_pred cCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCcc
Q 048657 66 NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKF 145 (456)
Q Consensus 66 ~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 145 (456)
.++++++++++++.++ .++...+..+++|++|++++|.+. ......+..+++|+.|++++|.+...
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~------------ 108 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYL------------ 108 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCC------------
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcC------------
Confidence 4689999999999998 888766888999999999999886 44555667777777777777765321
Q ss_pred ccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEe
Q 048657 146 QLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLD 225 (456)
Q Consensus 146 ~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 225 (456)
.+..+..+++|+.|++++|.+ .......+..+++|++|+
T Consensus 109 ----------------~~~~~~~l~~L~~L~L~~n~l-------------------------~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 109 ----------------PPHVFQNVPLLTVLVLERNDL-------------------------SSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp ----------------CTTTTTTCTTCCEEECCSSCC-------------------------CCCCTTTTTTCTTCCEEE
T ss_pred ----------------CHHHhcCCCCCCEEECCCCcc-------------------------CcCCHHHhcCCCCCcEEE
Confidence 112334455566666655544 333333457788999999
Q ss_pred CCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcc
Q 048657 226 ISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL 305 (456)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 305 (456)
+++|.+.+ ++......+++|+.|++++|.+.+. .+..+++|+.++++++.+. .++ ..++|+++++++|.+
T Consensus 148 L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~-~~~-----~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 148 MSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-TLA-----IPIAVEELDASHNSI 217 (390)
T ss_dssp CCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS-EEE-----CCSSCSEEECCSSCC
T ss_pred CCCCccCc-cChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc-ccC-----CCCcceEEECCCCee
Confidence 99998874 4444344589999999999988753 3667899999999999876 332 356899999999998
Q ss_pred cccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhc
Q 048657 306 EGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEF 385 (456)
Q Consensus 306 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 385 (456)
...... .+++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++. +..+
T Consensus 218 ~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~ 291 (390)
T 3o6n_A 218 NVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYG 291 (390)
T ss_dssp CEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSS
T ss_pred eecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-Cccc
Confidence 765332 358999999999999743 5788999999999999999988899999999999999999999864 5556
Q ss_pred cCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCC
Q 048657 386 CQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 451 (456)
Q Consensus 386 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 451 (456)
..+++|+.|++++|+++..+.....+++|++|++++|.+. .++ +..+++|+.|++++|++..
T Consensus 292 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~-~~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 292 QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCC-CCC---CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccc-eeC---chhhccCCEEEcCCCCccc
Confidence 7899999999999999876655555789999999999996 444 5678999999999998764
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=6.8e-31 Score=259.78 Aligned_cols=309 Identities=21% Similarity=0.253 Sum_probs=177.8
Q ss_pred CCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccce
Q 048657 42 SLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLK 121 (456)
Q Consensus 42 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 121 (456)
.+.+++.++++++.+....+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+. ..++..+..+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCC
Confidence 3577888888888887666666778888888888888887 555557788888888888888776 34445566677777
Q ss_pred EEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCch-HHhhcCCCccEEEecCcccccccchhhhhccccceee
Q 048657 122 FFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFP-KFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQL 200 (456)
Q Consensus 122 ~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 200 (456)
.|++++|.+.. ++ ..+..+++|+.|++++|.+.+..
T Consensus 127 ~L~L~~n~l~~-----------------------------l~~~~~~~l~~L~~L~Ls~N~l~~~~-------------- 163 (597)
T 3oja_B 127 VLVLERNDLSS-----------------------------LPRGIFHNTPKLTTLSMSNNNLERIE-------------- 163 (597)
T ss_dssp EEECCSSCCCC-----------------------------CCTTTTTTCTTCCEEECCSSCCCBCC--------------
T ss_pred EEEeeCCCCCC-----------------------------CCHHHhccCCCCCEEEeeCCcCCCCC--------------
Confidence 77777665531 11 12345556666666666554332
Q ss_pred eecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcC
Q 048657 201 SVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHL 280 (456)
Q Consensus 201 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 280 (456)
+..+..+++|+.|++++|.+.+ ++ ...+++|+.++++.|.+.+ +...+.|+.|++++|.+
T Consensus 164 -----------~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l 223 (597)
T 3oja_B 164 -----------DDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSI 223 (597)
T ss_dssp -----------TTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCC
T ss_pred -----------hhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcc
Confidence 2333444455555555554442 11 1124455555555554432 22344555666666555
Q ss_pred CCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCcc
Q 048657 281 TGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRW 360 (456)
Q Consensus 281 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 360 (456)
. .++... .++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++ .++..
T Consensus 224 ~-~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~ 296 (597)
T 3oja_B 224 N-VVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLY 296 (597)
T ss_dssp C-EEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECS
T ss_pred c-cccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcc
Confidence 4 333221 24566666666655542 34445566666666666665555555666666666666666655 23444
Q ss_pred ccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccC
Q 048657 361 LGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLH 425 (456)
Q Consensus 361 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~ 425 (456)
+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++.. ...+++|+.|++++|.+.
T Consensus 297 ~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 297 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp SSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred cccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCC
Confidence 455566666666666655 23444555566666666666655442 222455666666666553
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.4e-29 Score=248.73 Aligned_cols=311 Identities=20% Similarity=0.192 Sum_probs=245.2
Q ss_pred cCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCcc
Q 048657 66 NMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKF 145 (456)
Q Consensus 66 ~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~ 145 (456)
.+++++.++++++.++ .+|...+..+++|++|++++|.+. ..++..+..+++|+.|++++|.+...
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~------------ 114 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYL------------ 114 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCC------------
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCC------------
Confidence 4689999999999998 788767888999999999999887 44445667777777777777655321
Q ss_pred ccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEe
Q 048657 146 QLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLD 225 (456)
Q Consensus 146 ~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 225 (456)
.+..+..+++|+.|++++|. +....+..+..+++|+.|+
T Consensus 115 ----------------~~~~~~~l~~L~~L~L~~n~-------------------------l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 115 ----------------PPHVFQNVPLLTVLVLERND-------------------------LSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp ----------------CTTTTTTCTTCCEEECCSSC-------------------------CCCCCTTTTTTCTTCCEEE
T ss_pred ----------------CHHHHcCCCCCCEEEeeCCC-------------------------CCCCCHHHhccCCCCCEEE
Confidence 11223444555555555554 4433344467788999999
Q ss_pred CCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcc
Q 048657 226 ISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNL 305 (456)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 305 (456)
+++|.+.+..|..+ ..+++|+.|++++|.+.+. .+..+++|+.|++++|.+. .++ ..++|++|++++|.+
T Consensus 154 Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~-~l~-----~~~~L~~L~ls~n~l 223 (597)
T 3oja_B 154 MSNNNLERIEDDTF-QATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-TLA-----IPIAVEELDASHNSI 223 (597)
T ss_dssp CCSSCCCBCCTTTT-TTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS-EEE-----CCTTCSEEECCSSCC
T ss_pred eeCCcCCCCChhhh-hcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc-ccc-----CCchhheeeccCCcc
Confidence 99998885444444 4489999999999998754 2567899999999999876 332 356899999999998
Q ss_pred cccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhc
Q 048657 306 EGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEF 385 (456)
Q Consensus 306 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 385 (456)
...... ..++|+.|++++|.+.+ +..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++. +..+
T Consensus 224 ~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~ 297 (597)
T 3oja_B 224 NVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYG 297 (597)
T ss_dssp CEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSS
T ss_pred cccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-Cccc
Confidence 765433 24789999999999975 46788999999999999999988899999999999999999999864 5666
Q ss_pred cCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCC
Q 048657 386 CQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 451 (456)
Q Consensus 386 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 451 (456)
..+++|+.|++++|.++..+.....+++|+.|++++|.+.+ ++ +..+++|+.|++++|++++
T Consensus 298 ~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~-~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 298 QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVT-LK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCC-CC---CCTTCCCSEEECCSSCEEH
T ss_pred ccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCC-cC---hhhcCCCCEEEeeCCCCCC
Confidence 78999999999999999765555558899999999999963 43 5678999999999999864
No 41
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.7e-33 Score=269.42 Aligned_cols=361 Identities=21% Similarity=0.177 Sum_probs=181.8
Q ss_pred CCCccEEeccCCCCCCccccc-ccCCCCCcEEEcccCcccc----cchhhhhcCCCCcEEeccCCccccccCCCCCcCCC
Q 048657 19 MPSLKYLSLSDSNSSRILDRG-LCSLVHLQELYIDNNDLRG----SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLT 93 (456)
Q Consensus 19 ~~~L~~L~L~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~ 93 (456)
.++|++|+++++.+++..... +..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+......++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 457899999998877665433 6788999999999999874 34567777899999999999887322221222334
Q ss_pred ----CccEEEcCCceeeec---cCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHh
Q 048657 94 ----SIEELMLSNNHFQIP---ISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFL 166 (456)
Q Consensus 94 ----~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l 166 (456)
+|++|++++|.+... ..+..+..+++|++|++++|.+...... .+...+
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~------------------------~l~~~l 137 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ------------------------LLCEGL 137 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH------------------------HHHHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH------------------------HHHHHH
Confidence 689999998887621 2234556677788888777765421100 011111
Q ss_pred h-cCCCccEEEecCcccccccchhh---hhccccceeeeecccCcCCCCCcCcc-----CCccccEEeCCCCccCCCCch
Q 048657 167 Y-HQHDLEYVDLSHIKMNGEFPTWL---LENNTKLIQLSVVNDSLAGPFRLPIH-----SHKQLRLLDISTNNFRGHIPV 237 (456)
Q Consensus 167 ~-~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~ 237 (456)
. ..++|+.|++++|.+.+.....+ +..+++|++|++++|.+.......+. ..++|++|++++|.+.+....
T Consensus 138 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 217 (461)
T 1z7x_W 138 LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR 217 (461)
T ss_dssp TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred hcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence 1 24567777777777654332221 23345555555555544321111111 123445555554444321100
Q ss_pred hhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCccc----chhhcCCCcccEEEccCCccccc----c
Q 048657 238 EIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIP----EHLAVGCVNLESLALSNNNLEGH----M 309 (456)
Q Consensus 238 ~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~ 309 (456)
.++..+..+++|++|++++|.+.+... ..+...+++|++|++++|.++.. .
T Consensus 218 ---------------------~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 276 (461)
T 1z7x_W 218 ---------------------DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276 (461)
T ss_dssp ---------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred ---------------------HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence 123334444555555555554432111 11111244555555555544432 1
Q ss_pred cccccccccccEEEccCcccccccccccc-----CCCCCcEEEcCCCcCccc----cCccccCCCCCcEEEcCCCccccc
Q 048657 310 FSRNFNLANLKLLQLEGNRFVGEIPQSLS-----KCSSLEGLHLNNNSLSGR----IPRWLGNLTWLQYIIMPNNHLEGL 380 (456)
Q Consensus 310 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~ 380 (456)
...+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 22233345555555555544322211111 123555555555554432 233344445555555555554433
Q ss_pred CchhccC-----CCCCCeEeCcCCccCC----CCCccc-ccccccEEEccCccc
Q 048657 381 IPVEFCQ-----LDSLQILDISDNNISG----SLPACF-HPLSIKQVHLSKNML 424 (456)
Q Consensus 381 ~~~~~~~-----~~~L~~L~l~~~~l~~----~~~~~~-~~~~L~~l~l~~~~~ 424 (456)
.+..+.. .++|++|++++|.+++ ..+..+ ..++|++|++++|.+
T Consensus 357 ~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 357 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred cHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 2222221 3455555555555442 111111 144555555555554
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.1e-32 Score=265.23 Aligned_cols=350 Identities=20% Similarity=0.154 Sum_probs=213.1
Q ss_pred ccccccchhhhHHhhcCCCccEEeccCCCCCCcc----cccccCCCCCcEEEcccCcccccchhhhh-cCC----CCcEE
Q 048657 3 TRIALNTSFLQIIGESMPSLKYLSLSDSNSSRIL----DRGLCSLVHLQELYIDNNDLRGSLPWCLA-NMT----SLRIL 73 (456)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~l~----~L~~L 73 (456)
+++.+++.....+...+++|++|++++|.++... ...+..+++|++|++++|.+.+..+..+. .++ +|++|
T Consensus 11 s~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L 90 (461)
T 1z7x_W 11 QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL 90 (461)
T ss_dssp ESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEE
T ss_pred hhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEE
Confidence 5677777766664444999999999999987432 24677889999999999999865555444 355 79999
Q ss_pred eccCCcccc----ccCCCCCcCCCCccEEEcCCceeeeccCCCc-----ccccccceEEeccCcccccccccCcCCCCCc
Q 048657 74 DVSSNQLTG----SISSSPLVHLTSIEELMLSNNHFQIPISLEP-----FFNHSRLKFFYAENNQINAEITQSHSLIPPK 144 (456)
Q Consensus 74 ~l~~~~i~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 144 (456)
++++|.+++ .++. .+..+++|++|++++|.+... .+.. ....++|++|++++|.+.....
T Consensus 91 ~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--------- 159 (461)
T 1z7x_W 91 SLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDA-GLQLLCEGLLDPQCRLEKLQLEYCSLSAASC--------- 159 (461)
T ss_dssp ECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCBGGGH---------
T ss_pred EccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchH-HHHHHHHHHhcCCCcceEEECCCCCCCHHHH---------
Confidence 999999883 2344 688899999999999987622 1111 1235679999999887653211
Q ss_pred cccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhh----ccccceeeeecccCcCCC----CCcCcc
Q 048657 145 FQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLE----NNTKLIQLSVVNDSLAGP----FRLPIH 216 (456)
Q Consensus 145 ~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~----~~~~l~ 216 (456)
..++..+..+++|+.|++++|.+.+.....+.. ..+.|++|++++|.+... ++..+.
T Consensus 160 ---------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 224 (461)
T 1z7x_W 160 ---------------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224 (461)
T ss_dssp ---------------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH
T ss_pred ---------------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH
Confidence 124566778899999999999887655544433 355999999999987763 344456
Q ss_pred CCccccEEeCCCCccCCCCchh----hhccCCcceEEEccCCccCCC----ccccccCCCCCcEEeccCCcCCCcccchh
Q 048657 217 SHKQLRLLDISTNNFRGHIPVE----IGDVLPSLYVFNNSMNALDGS----IPSSFGNMKFLQILDLSNNHLTGEIPEHL 288 (456)
Q Consensus 217 ~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~ 288 (456)
.+++|++|++++|.+.+..... +...+++|+.+++++|.+... ++..+..+++|++|++++|.+.+..+..+
T Consensus 225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence 7788888988888766322211 111245666666666655532 34445556666666666665542222111
Q ss_pred h----cCCCcccEEEccCCcccccc----cccccccccccEEEccCccccccccccccC-----CCCCcEEEcCCCcCcc
Q 048657 289 A----VGCVNLESLALSNNNLEGHM----FSRNFNLANLKLLQLEGNRFVGEIPQSLSK-----CSSLEGLHLNNNSLSG 355 (456)
Q Consensus 289 ~----~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~~~ 355 (456)
. ...++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++
T Consensus 305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 1 11235555555555544321 122233344555555554443222221111 3444444444444443
Q ss_pred ----ccCccccCCCCCcEEEcCCCccc
Q 048657 356 ----RIPRWLGNLTWLQYIIMPNNHLE 378 (456)
Q Consensus 356 ----~~~~~~~~~~~L~~L~l~~~~~~ 378 (456)
.++..+..+++|++|++++|.++
T Consensus 385 ~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 385 SSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred hhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 33334444444444444444443
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.7e-28 Score=225.08 Aligned_cols=302 Identities=17% Similarity=0.186 Sum_probs=163.8
Q ss_pred chhhhHHhhcCC-----CccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccc
Q 048657 9 TSFLQIIGESMP-----SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGS 83 (456)
Q Consensus 9 ~~~~~~~~~~~~-----~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~ 83 (456)
+.+|..+...|| ++++++++++.++.++. .+ .++|++|++++|.+.+..+.++.++++|++|++++|.++ .
T Consensus 17 ~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~ 92 (332)
T 2ft3_A 17 DSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-K 92 (332)
T ss_dssp --------CCCCSSCEEETTEEECCSSCCSSCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-E
T ss_pred ccCCCcccCCCCCCCcccCCEEECCCCCccccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-c
Confidence 345544444343 57777777777666664 22 256777777777776555666777777777777777776 4
Q ss_pred cCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCch
Q 048657 84 ISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFP 163 (456)
Q Consensus 84 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 163 (456)
+....+.++++|++|++++|.+. ..+.... ++|++|++++|.+... .+
T Consensus 93 ~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~----------------------------~~ 140 (332)
T 2ft3_A 93 IHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKV----------------------------PK 140 (332)
T ss_dssp ECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCC----------------------------CS
T ss_pred cCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCcc----------------------------CH
Confidence 43336666777777777776654 2221111 4555555554443210 01
Q ss_pred HHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccC
Q 048657 164 KFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVL 243 (456)
Q Consensus 164 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 243 (456)
..+..+++|+.|++++|.+... ...+..+..+ +|+.|++++|.+. .+|....
T Consensus 141 ~~~~~l~~L~~L~l~~n~l~~~-----------------------~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~--- 192 (332)
T 2ft3_A 141 GVFSGLRNMNCIEMGGNPLENS-----------------------GFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP--- 192 (332)
T ss_dssp GGGSSCSSCCEEECCSCCCBGG-----------------------GSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC---
T ss_pred hHhCCCccCCEEECCCCccccC-----------------------CCCcccccCC-ccCEEECcCCCCC-ccCcccc---
Confidence 1233344444444444433210 1222233333 5666666666655 2333221
Q ss_pred CcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEE
Q 048657 244 PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQ 323 (456)
Q Consensus 244 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 323 (456)
++|+.+++++|.+.+..+..+. .+++|++|++++|.+.+.....+..+++|+.|+
T Consensus 193 ~~L~~L~l~~n~i~~~~~~~l~-------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 247 (332)
T 2ft3_A 193 ETLNELHLDHNKIQAIELEDLL-------------------------RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247 (332)
T ss_dssp SSCSCCBCCSSCCCCCCTTSST-------------------------TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCHHHhc-------------------------CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEE
Confidence 3444444444444333333333 445555555555555544444555666677777
Q ss_pred ccCccccccccccccCCCCCcEEEcCCCcCccccCccccC------CCCCcEEEcCCCccc--ccCchhccCCCCCCeEe
Q 048657 324 LEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGN------LTWLQYIIMPNNHLE--GLIPVEFCQLDSLQILD 395 (456)
Q Consensus 324 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~ 395 (456)
+++|.+. .+|..+..+++|++|++++|.+++..+..|.. ..+|+.|++++|++. ...+..|..+++|+.++
T Consensus 248 L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~ 326 (332)
T 2ft3_A 248 LDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQ 326 (332)
T ss_dssp CCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEE
T ss_pred CCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhh
Confidence 7777666 55666677777777777777776555555543 356788888888775 56667778888888888
Q ss_pred CcCCc
Q 048657 396 ISDNN 400 (456)
Q Consensus 396 l~~~~ 400 (456)
+++|+
T Consensus 327 l~~n~ 331 (332)
T 2ft3_A 327 FGNYK 331 (332)
T ss_dssp C----
T ss_pred ccccc
Confidence 88774
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.4e-27 Score=218.84 Aligned_cols=81 Identities=23% Similarity=0.300 Sum_probs=35.5
Q ss_pred CccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEc
Q 048657 21 SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 100 (456)
Q Consensus 21 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l 100 (456)
++++++++++.++.++. .+. +++++|++++|.+++..+..+.++++|++|++++|.++ .+....+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~-~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK-DLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCC-SCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCc-cCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEEC
Confidence 34444444444444442 111 34444455444444333334444444444444444444 222224444444444444
Q ss_pred CCcee
Q 048657 101 SNNHF 105 (456)
Q Consensus 101 ~~~~~ 105 (456)
++|.+
T Consensus 108 s~n~l 112 (330)
T 1xku_A 108 SKNQL 112 (330)
T ss_dssp CSSCC
T ss_pred CCCcC
Confidence 44443
No 45
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=8.3e-31 Score=260.13 Aligned_cols=430 Identities=14% Similarity=0.061 Sum_probs=224.7
Q ss_pred hhHHhhcCCCccEEeccCCC-CC---Ccc-----------cccccCCCCCcEEEcccCcccccchhhhhc-CCC-CcEEe
Q 048657 12 LQIIGESMPSLKYLSLSDSN-SS---RIL-----------DRGLCSLVHLQELYIDNNDLRGSLPWCLAN-MTS-LRILD 74 (456)
Q Consensus 12 ~~~~~~~~~~L~~L~L~~~~-~~---~~~-----------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~ 74 (456)
+..+..++++|++|+++++. +. .++ ......+++|++|++++|.+++..+..+.. +++ |++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 34444449999999998865 11 111 011227899999999999888776777766 444 99999
Q ss_pred ccCCc-ccc-ccCCCCCcCCCCccEEEcCCceeeecc---CCCcccccccceEEeccCcccccccccCcCC-CCCccccc
Q 048657 75 VSSNQ-LTG-SISSSPLVHLTSIEELMLSNNHFQIPI---SLEPFFNHSRLKFFYAENNQINAEITQSHSL-IPPKFQLS 148 (456)
Q Consensus 75 l~~~~-i~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~~L~ 148 (456)
+++|. ++. .+.. ....+++|++|++++|.+.... .......+++|+.|+++++.+.......+.. ...+.+|+
T Consensus 145 L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 145 LDKCSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EESCEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred CcCCCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 99986 221 1121 2347899999999999876221 1123456889999999988775221111110 11233556
Q ss_pred eeeccCCCCCCCCchHHhhcCCCccEEEecCcccc---cccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEe
Q 048657 149 RLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMN---GEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLD 225 (456)
Q Consensus 149 ~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 225 (456)
.|++..+... .++..+..+++|+.++++..... .... .....+++|+.+.+.++. ...++..+..+++|++|+
T Consensus 224 ~L~L~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 224 SVKVGDFEIL--ELVGFFKAAANLEEFCGGSLNEDIGMPEKY-MNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLD 299 (592)
T ss_dssp EEECSSCBGG--GGHHHHHHCTTCCEEEECBCCCCTTCTTSS-SCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEE
T ss_pred EEeccCccHH--HHHHHHhhhhHHHhhcccccccccchHHHH-HHhhccccccccCccccc-hhHHHHHHhhcCCCcEEe
Confidence 6665442221 24455555666666666542211 0000 112344555555555431 222333445556666666
Q ss_pred CCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccC-----------CcCCCcccchhhcCCCc
Q 048657 226 ISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN-----------NHLTGEIPEHLAVGCVN 294 (456)
Q Consensus 226 l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~-----------~~l~~~~~~~~~~~~~~ 294 (456)
+++|.+.+.........+++|+.|++..+.....++.....+++|++|++++ +.+++.....+...+++
T Consensus 300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~ 379 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQE 379 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTT
T ss_pred cCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCcc
Confidence 6666544322222233456666666652211112233334556666666663 23332222222334566
Q ss_pred ccEEEccCCcccccccccccc-cccccEEEcc----Ccccccc-----ccccccCCCCCcEEEcCCCc--CccccCcccc
Q 048657 295 LESLALSNNNLEGHMFSRNFN-LANLKLLQLE----GNRFVGE-----IPQSLSKCSSLEGLHLNNNS--LSGRIPRWLG 362 (456)
Q Consensus 295 L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~ 362 (456)
|++|++..+.+++.....+.. +++|+.|+++ .+.+++. .+..+..+++|++|+++.|. +++..+..+.
T Consensus 380 L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~ 459 (592)
T 3ogk_B 380 LEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG 459 (592)
T ss_dssp CSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH
T ss_pred CeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH
Confidence 666666555555444444433 5666666664 3334321 22224456666666665432 3433333332
Q ss_pred -CCCCCcEEEcCCCccccc-CchhccCCCCCCeEeCcCCccCCCCCccc--ccccccEEEccCcccCCCCCcccccCCCc
Q 048657 363 -NLTWLQYIIMPNNHLEGL-IPVEFCQLDSLQILDISDNNISGSLPACF--HPLSIKQVHLSKNMLHGQLKRGTFFNCSS 438 (456)
Q Consensus 363 -~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 438 (456)
.+++|+.|++++|.+++. .+..+..+++|++|++++|.+++.....+ .+++|++|++++|++++.........+|.
T Consensus 460 ~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~ 539 (592)
T 3ogk_B 460 QYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPY 539 (592)
T ss_dssp HSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTT
T ss_pred HhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCC
Confidence 356666666666666542 22334556666666666666543222211 24566666666666543322232334555
Q ss_pred ceEEEccC
Q 048657 439 LVTLDLSY 446 (456)
Q Consensus 439 L~~L~l~~ 446 (456)
++...+..
T Consensus 540 l~~~~~~~ 547 (592)
T 3ogk_B 540 WNIELIPS 547 (592)
T ss_dssp EEEEEECC
T ss_pred cEEEEecC
Confidence 55544443
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=5.6e-29 Score=225.75 Aligned_cols=251 Identities=25% Similarity=0.354 Sum_probs=163.7
Q ss_pred cceeeeecccCcCC--CCCcCccCCccccEEeCCC-CccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcE
Q 048657 196 KLIQLSVVNDSLAG--PFRLPIHSHKQLRLLDIST-NNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI 272 (456)
Q Consensus 196 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~ 272 (456)
+++.|+++++.+.+ .++..+..+++|++|++++ +.+.+.+|..+.. +++|++|+++.|.+.+.+|..+..+++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 44455555555444 4445555666666666663 5555555555443 666666666666666566666667777777
Q ss_pred EeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccc-cccEEEccCccccccccccccCCCCCcEEEcCCC
Q 048657 273 LDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLA-NLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNN 351 (456)
Q Consensus 273 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 351 (456)
|++++|.+.+.++..+ ..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+.+..|..+..++ |++|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGG-GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHH-hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 7777776664444443 3566777777777776655555566665 677777777777666666666665 777777777
Q ss_pred cCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCc
Q 048657 352 SLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKR 430 (456)
Q Consensus 352 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~ 430 (456)
.+++..+..+..+++|+.|++++|.+++.++. +..+++|++|++++|++++..+..+. .++|++|++++|.+.+.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 77666667777777777777777777654433 56667777777777777755555443 56777777777777666666
Q ss_pred ccccCCCcceEEEccCcc-cCCC
Q 048657 431 GTFFNCSSLVTLDLSYNR-LNGS 452 (456)
Q Consensus 431 ~~~~~~~~L~~L~l~~~~-l~~~ 452 (456)
. ..+++|+.+++++|+ ++|.
T Consensus 287 ~--~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 287 G--GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp S--TTGGGSCGGGTCSSSEEEST
T ss_pred C--ccccccChHHhcCCCCccCC
Confidence 4 567777777777776 6553
No 47
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.2e-30 Score=258.98 Aligned_cols=403 Identities=14% Similarity=0.059 Sum_probs=280.7
Q ss_pred hhHHhhcCCCccEEeccCCCCCCcccccccC-CCC-CcEEEcccCc-ccc-cchhhhhcCCCCcEEeccCCccccc----
Q 048657 12 LQIIGESMPSLKYLSLSDSNSSRILDRGLCS-LVH-LQELYIDNND-LRG-SLPWCLANMTSLRILDVSSNQLTGS---- 83 (456)
Q Consensus 12 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~-l~~-L~~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~~i~~~---- 83 (456)
...++..+++|++|+|++|.+++.....+.. ++. |++|++++|. +.. .++.....+++|++|++++|.+++.
T Consensus 104 l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~ 183 (592)
T 3ogk_B 104 VTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183 (592)
T ss_dssp HHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred HHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH
Confidence 3445544999999999999877655555655 445 9999999986 332 2334445899999999999987633
Q ss_pred cCCCCCcCCCCccEEEcCCceeee---ccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCC--C
Q 048657 84 ISSSPLVHLTSIEELMLSNNHFQI---PISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYE--D 158 (456)
Q Consensus 84 ~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~--~ 158 (456)
++. ....+++|++|++++|.+.. ......+..+++|+.|++++|.+.... ..+....+|+.+++..... .
T Consensus 184 l~~-~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~----~~~~~~~~L~~L~l~~~~~~~~ 258 (592)
T 3ogk_B 184 LHE-LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV----GFFKAAANLEEFCGGSLNEDIG 258 (592)
T ss_dssp HHH-HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH----HHHHHCTTCCEEEECBCCCCTT
T ss_pred HHH-HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH----HHHhhhhHHHhhcccccccccc
Confidence 222 34578999999999998751 122234457899999999998775422 1123445888888854322 1
Q ss_pred CCCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCC-cCccCCccccEEeCCCCccCCCCch
Q 048657 159 GVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFR-LPIHSHKQLRLLDISTNNFRGHIPV 237 (456)
Q Consensus 159 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~ 237 (456)
.......+..+++|+.+++.++.. ..++ .....+++|++|++++|.+..... ..+..+++|+.|++. +.+.+....
T Consensus 259 ~~~~~~~l~~~~~L~~L~l~~~~~-~~l~-~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~ 335 (592)
T 3ogk_B 259 MPEKYMNLVFPRKLCRLGLSYMGP-NEMP-ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLE 335 (592)
T ss_dssp CTTSSSCCCCCTTCCEEEETTCCT-TTGG-GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHH
T ss_pred hHHHHHHhhccccccccCccccch-hHHH-HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHH
Confidence 234445667789999999987532 2333 345789999999999998553222 235788999999998 444433344
Q ss_pred hhhccCCcceEEEccC-----------CccCCC-ccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEcc----
Q 048657 238 EIGDVLPSLYVFNNSM-----------NALDGS-IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALS---- 301 (456)
Q Consensus 238 ~~~~~~~~L~~l~l~~-----------~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~---- 301 (456)
.+...+++|+.|+++. +.+++. +......+++|++|+++.+.+++.....+...+++|++|++.
T Consensus 336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 415 (592)
T 3ogk_B 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415 (592)
T ss_dssp HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSC
T ss_pred HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCC
Confidence 4555689999999994 344432 233345699999999988888765555555558999999996
Q ss_pred CCccccc-----ccccccccccccEEEccCcc--ccccccccc-cCCCCCcEEEcCCCcCccc-cCccccCCCCCcEEEc
Q 048657 302 NNNLEGH-----MFSRNFNLANLKLLQLEGNR--FVGEIPQSL-SKCSSLEGLHLNNNSLSGR-IPRWLGNLTWLQYIIM 372 (456)
Q Consensus 302 ~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~-~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l 372 (456)
.+.+++. ....+..+++|+.|+++.|. +++.....+ ..+++|++|++++|.+++. .+..+..+++|++|++
T Consensus 416 ~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l 495 (592)
T 3ogk_B 416 EERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM 495 (592)
T ss_dssp CSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEE
T ss_pred CccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeec
Confidence 4566653 22335568999999997654 544333333 4589999999999998863 4556678999999999
Q ss_pred CCCccccc-CchhccCCCCCCeEeCcCCccCCCCCcccc--cccccEEEccCc
Q 048657 373 PNNHLEGL-IPVEFCQLDSLQILDISDNNISGSLPACFH--PLSIKQVHLSKN 422 (456)
Q Consensus 373 ~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--~~~L~~l~l~~~ 422 (456)
++|.+++. .+..+..+++|+.|++++|+++......+. .+.+....+..+
T Consensus 496 ~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 496 RGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp ESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 99998654 334446789999999999998876544433 455554444443
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.2e-27 Score=217.51 Aligned_cols=270 Identities=21% Similarity=0.226 Sum_probs=221.4
Q ss_pred CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEE
Q 048657 170 HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF 249 (456)
Q Consensus 170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 249 (456)
++++.|+++++.+.+.. ...+..+++|++|++++|.+....+..++.+++|++|++++|.+. .+|.... ++|+.+
T Consensus 52 ~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L 126 (330)
T 1xku_A 52 PDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQEL 126 (330)
T ss_dssp TTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEE
T ss_pred CCCeEEECCCCcCCEeC-hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEE
Confidence 57888999988877443 333578889999999999888877888899999999999999887 5665543 699999
Q ss_pred EccCCccCCCccccccCCCCCcEEeccCCcCCC-cccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcc
Q 048657 250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTG-EIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNR 328 (456)
Q Consensus 250 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 328 (456)
+++.|.+.+..+..+..+++|+.|++++|.+.. ......+..+++|++|++++|.+....... .++|++|++++|.
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~ 203 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNK 203 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSC
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc---cccCCEEECCCCc
Confidence 999999887777788999999999999998752 133344557899999999999988644322 3899999999999
Q ss_pred ccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcc
Q 048657 329 FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPAC 408 (456)
Q Consensus 329 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 408 (456)
+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ ..|..+..+++|+.|++++|++++.....
T Consensus 204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~ 282 (330)
T 1xku_A 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282 (330)
T ss_dssp CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhh
Confidence 98777888999999999999999998777778999999999999999998 56778899999999999999999887666
Q ss_pred cc-------cccccEEEccCcccCC-CCCcccccCCCcceEEEccCcc
Q 048657 409 FH-------PLSIKQVHLSKNMLHG-QLKRGTFFNCSSLVTLDLSYNR 448 (456)
Q Consensus 409 ~~-------~~~L~~l~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~ 448 (456)
+. ..+++.+++++|.+.. .++...|..+++++.+++++|+
T Consensus 283 f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 53 3578999999999842 3555668889999999999884
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=1.5e-28 Score=222.88 Aligned_cols=234 Identities=29% Similarity=0.444 Sum_probs=212.5
Q ss_pred ccccEEeCCCCccCC--CCchhhhccCCcceEEEccC-CccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcc
Q 048657 219 KQLRLLDISTNNFRG--HIPVEIGDVLPSLYVFNNSM-NALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL 295 (456)
Q Consensus 219 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L 295 (456)
.+++.|+++++.+.+ .+|..+.. +++|+.|++++ +.+.+.+|..+..+++|++|++++|.+.+.++..+ ..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~-l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhC-CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCCCC
Confidence 579999999999987 67777665 89999999995 88888899999999999999999999986666654 479999
Q ss_pred cEEEccCCcccccccccccccccccEEEccCccccccccccccCCC-CCcEEEcCCCcCccccCccccCCCCCcEEEcCC
Q 048657 296 ESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCS-SLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374 (456)
Q Consensus 296 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 374 (456)
++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..++ .|++|++++|.+++..|..+..++ |+.|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 9999999999988888889999999999999999988999999998 999999999999988999999887 99999999
Q ss_pred CcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCC
Q 048657 375 NHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 454 (456)
Q Consensus 375 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p 454 (456)
|.+.+..+..+..+++|+.|++++|.+++..+.....++|++|++++|.+.+.+|.. |..+++|+.|++++|++++++|
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG-GGGCTTCCEEECCSSEEEEECC
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH-HhcCcCCCEEECcCCcccccCC
Confidence 999988899999999999999999999987777556889999999999998777776 8899999999999999999999
Q ss_pred CC
Q 048657 455 DW 456 (456)
Q Consensus 455 ~~ 456 (456)
++
T Consensus 286 ~~ 287 (313)
T 1ogq_A 286 QG 287 (313)
T ss_dssp CS
T ss_pred CC
Confidence 63
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=1.6e-27 Score=218.49 Aligned_cols=287 Identities=25% Similarity=0.362 Sum_probs=195.0
Q ss_pred CCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCCCcccccccceEEe
Q 048657 45 HLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISLEPFFNHSRLKFFY 124 (456)
Q Consensus 45 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~ 124 (456)
++++++++++.++ ..|..+. ++|++|++++|.++ .++...+.++++|++|++++|.+. ...+..+..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEE
Confidence 5777888777776 4454443 57777888877777 555446777777777777777665 23334444555555555
Q ss_pred ccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecc
Q 048657 125 AENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVN 204 (456)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 204 (456)
+++|.+ . .++....
T Consensus 109 L~~n~l----------------------------------------------------~-~l~~~~~------------- 122 (332)
T 2ft3_A 109 ISKNHL----------------------------------------------------V-EIPPNLP------------- 122 (332)
T ss_dssp CCSSCC----------------------------------------------------C-SCCSSCC-------------
T ss_pred CCCCcC----------------------------------------------------C-ccCcccc-------------
Confidence 554443 2 1111100
Q ss_pred cCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccC--CCccccccCCCCCcEEeccCCcCCC
Q 048657 205 DSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALD--GSIPSSFGNMKFLQILDLSNNHLTG 282 (456)
Q Consensus 205 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~l~~ 282 (456)
++|++|++++|.+. .++......+++|+.+++++|.+. +..+..+..+ +|++|++++|.+.
T Consensus 123 --------------~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~- 185 (332)
T 2ft3_A 123 --------------SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT- 185 (332)
T ss_dssp --------------TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-
T ss_pred --------------ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-
Confidence 23333333333333 222222222444444444444442 1334455555 7888889888887
Q ss_pred cccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCcccc
Q 048657 283 EIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLG 362 (456)
Q Consensus 283 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 362 (456)
.++... .++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+.
T Consensus 186 ~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 GIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp SCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred ccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 566543 378999999999998877778889999999999999998777778999999999999999998 7888899
Q ss_pred CCCCCcEEEcCCCcccccCchhccC------CCCCCeEeCcCCccC--CCCCcccc-cccccEEEccCcc
Q 048657 363 NLTWLQYIIMPNNHLEGLIPVEFCQ------LDSLQILDISDNNIS--GSLPACFH-PLSIKQVHLSKNM 423 (456)
Q Consensus 363 ~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~~~l~--~~~~~~~~-~~~L~~l~l~~~~ 423 (456)
.+++|+.|++++|.+++..+..|.. .++|+.|++++|++. ...+..+. .+.|+.+++++|+
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 9999999999999999877777765 367999999999987 44444444 6789999999875
No 51
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=3.3e-30 Score=255.92 Aligned_cols=429 Identities=13% Similarity=0.072 Sum_probs=265.3
Q ss_pred hhhHHhhcCCCccEEeccCCC-CCCcc--------------cccccCCCCCcEEEcccCcccccchhhhh-cCCCCcEEe
Q 048657 11 FLQIIGESMPSLKYLSLSDSN-SSRIL--------------DRGLCSLVHLQELYIDNNDLRGSLPWCLA-NMTSLRILD 74 (456)
Q Consensus 11 ~~~~~~~~~~~L~~L~L~~~~-~~~~~--------------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~ 74 (456)
.+..+..++++|++|+++++. +.+.. ......+++|++|++++|.+++..+..+. .+++|++|+
T Consensus 57 ~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~ 136 (594)
T 2p1m_B 57 SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLV 136 (594)
T ss_dssp CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEE
T ss_pred CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEe
Confidence 344444459999999999876 32221 11234688999999999998877777775 689999999
Q ss_pred ccCC-ccccc-cCCCCCcCCCCccEEEcCCceeeecc---CCCcccccccceEEeccCcccccccccCcCC-CCCccccc
Q 048657 75 VSSN-QLTGS-ISSSPLVHLTSIEELMLSNNHFQIPI---SLEPFFNHSRLKFFYAENNQINAEITQSHSL-IPPKFQLS 148 (456)
Q Consensus 75 l~~~-~i~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-~~~~~~L~ 148 (456)
+++| .+++. ++. ...++++|++|++++|.+.... .......+++|+.|+++++. .......+.. ...+.+|+
T Consensus 137 L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~ 214 (594)
T 2p1m_B 137 LSSCEGFSTDGLAA-IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLK 214 (594)
T ss_dssp EESCEEEEHHHHHH-HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCC
T ss_pred CCCcCCCCHHHHHH-HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCc
Confidence 9998 55522 332 3457899999999999876322 11223367899999998876 1111111111 11245788
Q ss_pred eeeccCCCCCCCCchHHhhcCCCccEEEecCccc-------ccccchhhhhccccceeee-ecccCcCCCCCcCccCCcc
Q 048657 149 RLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKM-------NGEFPTWLLENNTKLIQLS-VVNDSLAGPFRLPIHSHKQ 220 (456)
Q Consensus 149 ~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-------~~~~~~~~~~~~~~L~~L~-l~~~~~~~~~~~~l~~~~~ 220 (456)
.|++..+.. ...++..+..+++|+.++++.+.. . .++. .+.++++|+.+. +.... ...++..+..+++
T Consensus 215 ~L~L~~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~-~l~~~~~L~~Ls~~~~~~-~~~l~~~~~~~~~ 290 (594)
T 2p1m_B 215 SLKLNRAVP-LEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSV-ALSGCKELRCLSGFWDAV-PAYLPAVYSVCSR 290 (594)
T ss_dssp EEECCTTSC-HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHH-HHHTCTTCCEEECCBTCC-GGGGGGGHHHHTT
T ss_pred EEecCCCCc-HHHHHHHHhcCCcceEcccccccCccchhhHH-HHHH-HHhcCCCcccccCCcccc-hhhHHHHHHhhCC
Confidence 888855422 223667777788888888765431 1 1111 235677777772 22211 1122223345678
Q ss_pred ccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCC-CccccccCCCCCcEEeccC---------CcCCCcccchhhc
Q 048657 221 LRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDG-SIPSSFGNMKFLQILDLSN---------NHLTGEIPEHLAV 290 (456)
Q Consensus 221 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~---------~~l~~~~~~~~~~ 290 (456)
|++|++++|.+.+.....+...+++|+.|++.++ +.. .++.....+++|++|++.+ +.+++.....+..
T Consensus 291 L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~ 369 (594)
T 2p1m_B 291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM 369 (594)
T ss_dssp CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH
Confidence 8888888887653333333445788888888876 322 2233334578888888833 2343222233333
Q ss_pred CCCcccEEEccCCccccccccccc-ccccccEEEcc--C----ccccc-----cccccccCCCCCcEEEcCCCcCccccC
Q 048657 291 GCVNLESLALSNNNLEGHMFSRNF-NLANLKLLQLE--G----NRFVG-----EIPQSLSKCSSLEGLHLNNNSLSGRIP 358 (456)
Q Consensus 291 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~ 358 (456)
.+++|++|.+..+.+++.....+. .+++|+.|+++ + +.++. ..+..+..+++|++|++++ .+++..+
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 578888888877777765444443 47888888888 3 33331 1122256678888888877 5655555
Q ss_pred ccccC-CCCCcEEEcCCCcccccCchhc-cCCCCCCeEeCcCCccCCCCCccc--ccccccEEEccCcccCCCCCccccc
Q 048657 359 RWLGN-LTWLQYIIMPNNHLEGLIPVEF-CQLDSLQILDISDNNISGSLPACF--HPLSIKQVHLSKNMLHGQLKRGTFF 434 (456)
Q Consensus 359 ~~~~~-~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~ 434 (456)
..+.. +++|+.|++++|.+++..+..+ ..+++|+.|++++|++++.....+ .+++|++|++++|.++.........
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 528 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ 528 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHH
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHH
Confidence 55554 7888888888888865544444 567888888888888754333222 2578888888888874222222224
Q ss_pred CCCcceEEEccCc
Q 048657 435 NCSSLVTLDLSYN 447 (456)
Q Consensus 435 ~~~~L~~L~l~~~ 447 (456)
.+|.++...+..+
T Consensus 529 ~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 529 KMPKLNVEVIDER 541 (594)
T ss_dssp HCTTEEEEEECSS
T ss_pred hCCCCEEEEecCC
Confidence 5677766655544
No 52
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=5.4e-29 Score=247.23 Aligned_cols=421 Identities=11% Similarity=0.054 Sum_probs=284.7
Q ss_pred cEEeccCCCCCCcccccccCCCCCcEEEcccCcccccc---------------hhhhhcCCCCcEEeccCCccccccCCC
Q 048657 23 KYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSL---------------PWCLANMTSLRILDVSSNQLTGSISSS 87 (456)
Q Consensus 23 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---------------~~~~~~l~~L~~L~l~~~~i~~~~~~~ 87 (456)
+.+++.++... .+...+.++++|++|+++++...... +.....+++|++|++++|.+++....
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~- 123 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE- 123 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH-
Confidence 46666665432 33346778999999999997532111 12245689999999999988754443
Q ss_pred CCc-CCCCccEEEcCCc-eeeeccCCCcccccccceEEeccCcccccccccCcCCC-CCccccceeeccCCC--CCCCCc
Q 048657 88 PLV-HLTSIEELMLSNN-HFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLI-PPKFQLSRLSLSSGY--EDGVTF 162 (456)
Q Consensus 88 ~~~-~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~-~~~~~L~~l~l~~~~--~~~~~~ 162 (456)
.+. .+++|++|++++| .+...........+++|++|++++|.+.+.....+... ....+|+.|++..+. .....+
T Consensus 124 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l 203 (594)
T 2p1m_B 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSAL 203 (594)
T ss_dssp HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHH
T ss_pred HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHH
Confidence 343 6899999999999 44422223334578999999999998766544433333 356689999997654 111223
Q ss_pred hHHhhcCCCccEEEecCcccccccchhhhhccccceeeeecccCcC------CCCCcCccCCccccEE-eCCCCccCCCC
Q 048657 163 PKFLYHQHDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLA------GPFRLPIHSHKQLRLL-DISTNNFRGHI 235 (456)
Q Consensus 163 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~~~~~~l~~~~~L~~L-~l~~~~~~~~~ 235 (456)
......+++|+.|++++|...+.+ ......+++|+++.+..+... ..+...+..+++|+.+ .+...... .+
T Consensus 204 ~~l~~~~~~L~~L~L~~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~-~l 281 (594)
T 2p1m_B 204 ERLVTRCPNLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA-YL 281 (594)
T ss_dssp HHHHHHCTTCCEEECCTTSCHHHH-HHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGG-GG
T ss_pred HHHHHhCCCCcEEecCCCCcHHHH-HHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchh-hH
Confidence 444456899999999988432233 334578899999997665321 0112245778888888 44432211 22
Q ss_pred chhhhccCCcceEEEccCCccCCC-ccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccC---------Ccc
Q 048657 236 PVEIGDVLPSLYVFNNSMNALDGS-IPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSN---------NNL 305 (456)
Q Consensus 236 ~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~---------~~~ 305 (456)
+. ....+++|+.|+++.|.+.+. +...+..+++|++|+++++ +.+.....+...+++|++|++.+ +.+
T Consensus 282 ~~-~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 282 PA-VYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp GG-GHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred HH-HHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 22 222478999999999986543 2334668999999999988 43233334444689999999943 345
Q ss_pred ccccccccc-ccccccEEEccCcccccccccccc-CCCCCcEEEcC--C----CcCcc-----ccCccccCCCCCcEEEc
Q 048657 306 EGHMFSRNF-NLANLKLLQLEGNRFVGEIPQSLS-KCSSLEGLHLN--N----NSLSG-----RIPRWLGNLTWLQYIIM 372 (456)
Q Consensus 306 ~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~--~----~~~~~-----~~~~~~~~~~~L~~L~l 372 (456)
++.....+. .+++|+.|.+..+.+++.....+. .+++|+.|+++ + +.+++ .++..+..+++|+.|++
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 443333333 489999998888888755444444 58999999999 3 34542 12223667899999999
Q ss_pred CCCcccccCchhccC-CCCCCeEeCcCCccCCCCCccc--ccccccEEEccCcccCCCCCcccccCCCcceEEEccCccc
Q 048657 373 PNNHLEGLIPVEFCQ-LDSLQILDISDNNISGSLPACF--HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449 (456)
Q Consensus 373 ~~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 449 (456)
++ .+++..+..+.. +++|+.|++++|.+++.....+ .+++|++|++++|.+++.........+++|+.|++++|++
T Consensus 440 ~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 440 SG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 88 666554555554 8899999999999875544333 2789999999999985444444456789999999999988
Q ss_pred C
Q 048657 450 N 450 (456)
Q Consensus 450 ~ 450 (456)
+
T Consensus 519 ~ 519 (594)
T 2p1m_B 519 S 519 (594)
T ss_dssp B
T ss_pred C
Confidence 5
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2e-25 Score=202.24 Aligned_cols=228 Identities=23% Similarity=0.251 Sum_probs=107.4
Q ss_pred ccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCC--CchhhhccCCcceEEEccCCccCCCccccccCCCCCcE
Q 048657 195 TKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGH--IPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI 272 (456)
Q Consensus 195 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~ 272 (456)
+.+++|+++++.+.......++.+++|+.|++++|.+... .+..... +++|+.|++++|.+. .++..+..+++|++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVI-TMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHS-CSCCCEEECCSCSEE-EEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccc-ccccCEEECCCCccc-cChhhcCCCCCCCE
Confidence 3555555555555544433445555555555555554311 1222222 455555555555444 23334445555555
Q ss_pred EeccCCcCCCcccc-hhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccc-cccccccCCCCCcEEEcCC
Q 048657 273 LDLSNNHLTGEIPE-HLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVG-EIPQSLSKCSSLEGLHLNN 350 (456)
Q Consensus 273 L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~ 350 (456)
|++++|.+. .++. ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++
T Consensus 106 L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 106 LDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 555555444 2221 223344555555555555444444444444555555555555443 2344444455555555555
Q ss_pred CcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-c-ccccEEEccCcccC
Q 048657 351 NSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-P-LSIKQVHLSKNMLH 425 (456)
Q Consensus 351 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~-~~L~~l~l~~~~~~ 425 (456)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+. . ++|++|++++|.+.
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 555444444444555555555555555444444444455555555555555444433332 1 24555555554443
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=4e-25 Score=204.36 Aligned_cols=167 Identities=19% Similarity=0.189 Sum_probs=85.0
Q ss_pred ccCCccccEEeCCCCc-cCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCC
Q 048657 215 IHSHKQLRLLDISTNN-FRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCV 293 (456)
Q Consensus 215 l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 293 (456)
+..+++|+.|++++|. +. .++......+++|+.+++++|.+.+..+..+..+++|++|++++|.+. .++......++
T Consensus 145 ~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~ 222 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTS 222 (353)
T ss_dssp CTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTT
T ss_pred hccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcc
Confidence 3444555555555542 22 222222223566666666666665555666667777777777777765 55555444567
Q ss_pred cccEEEccCCccccccccccc---ccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEE
Q 048657 294 NLESLALSNNNLEGHMFSRNF---NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYI 370 (456)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 370 (456)
+|++|++++|.+.+.....+. ....++.+++.++.+.+. .+. .+|..+..+++|++|
T Consensus 223 ~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~-------------------~l~-~l~~~l~~l~~L~~L 282 (353)
T 2z80_A 223 SVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE-------------------SLF-QVMKLLNQISGLLEL 282 (353)
T ss_dssp TEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH-------------------HHH-HHHHHHHTCTTCCEE
T ss_pred cccEEECCCCccccccccccccccccchhhccccccccccCc-------------------chh-hhHHHHhcccCCCEE
Confidence 777777777766653322211 123333444443333221 000 233444555555555
Q ss_pred EcCCCcccccCchhccCCCCCCeEeCcCCccCC
Q 048657 371 IMPNNHLEGLIPVEFCQLDSLQILDISDNNISG 403 (456)
Q Consensus 371 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 403 (456)
++++|.++..+...|..+++|++|++++|++.+
T Consensus 283 ~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 283 EFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCCCCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 555555553333334555555555555555544
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1.4e-25 Score=203.23 Aligned_cols=230 Identities=26% Similarity=0.286 Sum_probs=180.0
Q ss_pred ccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCC--CccccccCCCCCcEEeccCCcCCCcccchhhcCCCccc
Q 048657 219 KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDG--SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLE 296 (456)
Q Consensus 219 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~ 296 (456)
++++.|+++++.+. .+|...+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+. .++..+ ..+++|+
T Consensus 28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~-~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF-LGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEE-ETCTTCC
T ss_pred CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhc-CCCCCCC
Confidence 67888888888887 6666655568888888888887763 23556667888888998888876 555543 4688888
Q ss_pred EEEccCCccccccc-ccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCcc-ccCccccCCCCCcEEEcCC
Q 048657 297 SLALSNNNLEGHMF-SRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSG-RIPRWLGNLTWLQYIIMPN 374 (456)
Q Consensus 297 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~ 374 (456)
+|++++|.+.+... ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 184 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCC
Confidence 89888888876554 456778888888888888876777778888888899998888875 5777888888889999988
Q ss_pred CcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCC-cceEEEccCcccCCC
Q 048657 375 NHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCS-SLVTLDLSYNRLNGS 452 (456)
Q Consensus 375 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~ 452 (456)
|.+++..+..+..+++|+.|++++|.+++..+..+. .++|+.|++++|.+.+..+.. +..++ +|+.|++++|+++..
T Consensus 185 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 185 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE-LQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS-CCCCCTTCCEEECTTCCEECS
T ss_pred CCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH-HHhhhccCCEEEccCCCeecc
Confidence 888877778888888888999988888876664444 678888999888887555544 66664 888899988888754
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=6e-26 Score=209.93 Aligned_cols=277 Identities=17% Similarity=0.153 Sum_probs=160.6
Q ss_pred CccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEE
Q 048657 171 DLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFN 250 (456)
Q Consensus 171 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~ 250 (456)
.....+.+++.+. .+|..+ .+++++|+++++.+.......+..+++|+.|++++|.+.+..+..+ ..+++|++|+
T Consensus 32 ~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ 106 (353)
T 2z80_A 32 RNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF-SSLGSLEHLD 106 (353)
T ss_dssp TTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEE
T ss_pred CCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhc-CCCCCCCEEE
Confidence 3334455554443 333322 2356666666666555444456666666666666666653222223 2356666666
Q ss_pred ccCCccCCCccccccCCCCCcEEeccCCcCCCcccc-hhhcCCCcccEEEccCC-cccccccccccccccccEEEccCcc
Q 048657 251 NSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPE-HLAVGCVNLESLALSNN-NLEGHMFSRNFNLANLKLLQLEGNR 328 (456)
Q Consensus 251 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~ 328 (456)
+++|.+.+..+..+..+++|++|++++|.+. .++. ..+..+++|++|++++| .+.......+..+++|++|++++|.
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 6666666444444666666777777666665 4444 33445666777777666 3444444555666677777777776
Q ss_pred ccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhc---cCCCCCCeEeCcCCccCCCC
Q 048657 329 FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEF---CQLDSLQILDISDNNISGSL 405 (456)
Q Consensus 329 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~ 405 (456)
+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+ ...+.++.++++++.+.+..
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 665556666667777777777776653332334446677777777776665433322 23445666666666554321
Q ss_pred ----Cc-ccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCC
Q 048657 406 ----PA-CFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 454 (456)
Q Consensus 406 ----~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p 454 (456)
+. ....++|++|++++|.+. .++...|..+++|+.|++++|++++..|
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 11 112556777777777775 6666666777777777777777776544
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=6.9e-25 Score=199.96 Aligned_cols=224 Identities=17% Similarity=0.172 Sum_probs=148.5
Q ss_pred ccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEE
Q 048657 219 KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESL 298 (456)
Q Consensus 219 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 298 (456)
+.++.|+++++.+. .+|..+.. +++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+ ..+++|++|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCEE
T ss_pred cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCEE
Confidence 34555555555554 44444443 555555555555554 44555555555555555555555 444433 245555555
Q ss_pred EccCCcccccccccc---------cccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcE
Q 048657 299 ALSNNNLEGHMFSRN---------FNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQY 369 (456)
Q Consensus 299 ~l~~~~~~~~~~~~~---------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 369 (456)
++++|...+..+..+ ..+++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCE
Confidence 555554443333332 34778888888888777 66777778888888888888877 45666778888888
Q ss_pred EEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcc
Q 048657 370 IIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 448 (456)
Q Consensus 370 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 448 (456)
|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+. +++|++|++++|.+.+.+|.. +..+++|+.+++..+.
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~-l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPPHL 312 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG-GGGSCTTCEEECCGGG
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH-HhhccCceEEeCCHHH
Confidence 88888877777777788888888888888877766665544 678888888888887777776 7778888888887664
Q ss_pred cC
Q 048657 449 LN 450 (456)
Q Consensus 449 l~ 450 (456)
+.
T Consensus 313 ~~ 314 (328)
T 4fcg_A 313 QA 314 (328)
T ss_dssp SC
T ss_pred HH
Confidence 43
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=4.6e-25 Score=197.67 Aligned_cols=251 Identities=22% Similarity=0.184 Sum_probs=174.3
Q ss_pred cccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCc-cCCCccccccCCCCCcE
Q 048657 194 NTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA-LDGSIPSSFGNMKFLQI 272 (456)
Q Consensus 194 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~~~~L~~ 272 (456)
.+++++|+++++.+....+..+..+++|++|++++|.+.+..+..+. .+++|+.++++.|. +....+..+..+++|++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT-GLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcC-CccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 34666666666666655555667777777777777777633333333 36778888887776 55445667778888888
Q ss_pred EeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCc
Q 048657 273 LDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNS 352 (456)
Q Consensus 273 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 352 (456)
|++++|.+. .++...+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 110 L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 110 LHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp EECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCC-EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 888888877 4444444567888888888888877666667778888888888888875555567888888888888888
Q ss_pred CccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCccc
Q 048657 353 LSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGT 432 (456)
Q Consensus 353 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 432 (456)
+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.......+....++.+....+.+....|..
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~- 267 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR- 267 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGG-
T ss_pred ccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchH-
Confidence 8877788888888888888888888877777788888888888888888754333222234455555555555455544
Q ss_pred ccC--CCcceEEEccCc
Q 048657 433 FFN--CSSLVTLDLSYN 447 (456)
Q Consensus 433 ~~~--~~~L~~L~l~~~ 447 (456)
+.+ +..++..++.+|
T Consensus 268 l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 268 LAGRDLKRLAANDLQGC 284 (285)
T ss_dssp GTTCBGGGSCGGGSCCC
T ss_pred hCCcChhhcCHHHhccC
Confidence 222 334444444444
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=2e-24 Score=193.48 Aligned_cols=204 Identities=23% Similarity=0.191 Sum_probs=95.9
Q ss_pred cceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCc-ccccccccccccccccEEE
Q 048657 245 SLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNN-LEGHMFSRNFNLANLKLLQ 323 (456)
Q Consensus 245 ~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~ 323 (456)
+++.++++++.+....+..+..+++|++|++++|.+. .+....+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 4444444444444333334444445555555544444 2222222344445555555543 4333334444445555555
Q ss_pred ccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCC
Q 048657 324 LEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISG 403 (456)
Q Consensus 324 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 403 (456)
+++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 55555543334444455555555555555543333444455555555555555544444444455555555555555544
Q ss_pred CCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccC
Q 048657 404 SLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 450 (456)
Q Consensus 404 ~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 450 (456)
..+..+. .++|++|++++|.+. .++...+..+++|+.|++++|++.
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCHhHccCcccccEeeCCCCcCC-cCCHHHcccCcccCEEeccCCCcc
Confidence 4333332 345555555555553 233333455555555555555544
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=4.4e-24 Score=203.37 Aligned_cols=226 Identities=26% Similarity=0.251 Sum_probs=114.3
Q ss_pred ccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEE
Q 048657 219 KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESL 298 (456)
Q Consensus 219 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 298 (456)
+.++.|++++|.+. .++...+..+++|+.|+++.|.+....+..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus 64 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCcee
Confidence 34445555555444 222222223455555555555544434444555555555555555554 4444333445555555
Q ss_pred EccCCcccccccccccccccccEEEccCcc-ccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcc
Q 048657 299 ALSNNNLEGHMFSRNFNLANLKLLQLEGNR-FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHL 377 (456)
Q Consensus 299 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 377 (456)
++++|.+.......+..+++|+.|++++|. +....+..+..+++|++|++++|.++ .+| .+..+++|++|++++|.+
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCcc
Confidence 555555554444444555555555555532 22122234555555555555555554 223 245555555555555555
Q ss_pred cccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCccc
Q 048657 378 EGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449 (456)
Q Consensus 378 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 449 (456)
++..+..|..+++|+.|++++|++++..+..+. +++|+.|++++|.+. .++...|..+++|+.|++++|++
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCE
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCc
Confidence 555555555555555555555555554444333 455555555555553 44444455556666666665554
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=7.3e-24 Score=202.57 Aligned_cols=227 Identities=25% Similarity=0.229 Sum_probs=136.7
Q ss_pred ccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEE
Q 048657 219 KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESL 298 (456)
Q Consensus 219 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L 298 (456)
++++.|++++|.+.+..+..+ ..+++|+.|+++.|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTF-RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHHc-CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEE
Confidence 455666666666553222222 23566666666666665544555666666666666666665 5554444456666666
Q ss_pred EccCCcccccccccccccccccEEEccCcc-ccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcc
Q 048657 299 ALSNNNLEGHMFSRNFNLANLKLLQLEGNR-FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHL 377 (456)
Q Consensus 299 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 377 (456)
++++|.+.......+..+++|+.|++++|. +....+..+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCC
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcC
Confidence 666666665555555666666666666633 332223345666666777776666653 22 355666677777777766
Q ss_pred cccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccC
Q 048657 378 EGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 450 (456)
Q Consensus 378 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 450 (456)
++..+..|..+++|+.|++++|++++..+..+. +++|+.|++++|.+. .++...|..+++|+.|++++|++.
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCcC
Confidence 666666666666777777777666665555444 556677777777664 455555666677777777776643
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=1.2e-23 Score=200.42 Aligned_cols=229 Identities=20% Similarity=0.151 Sum_probs=127.1
Q ss_pred CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEE
Q 048657 170 HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF 249 (456)
Q Consensus 170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 249 (456)
++++.|+++++.+....+. .+..+++|+.|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|+.|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCcee
Confidence 4566666666665533322 2355566666666666655555555555666666666666555 3443333335566666
Q ss_pred EccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccc
Q 048657 250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRF 329 (456)
Q Consensus 250 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 329 (456)
++++|.+....+..+..+++|++|+++++...+.++...+..+++|++|++++|.+.... .+..+++|+.|++++|.+
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCC
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCcc
Confidence 666665554444455556666666665543222444444445556666666666555322 244555666666666665
Q ss_pred cccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657 330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 330 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 402 (456)
.+..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus 220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 5444555555666666666666655555555555666666666666665555555555566666666665543
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=8.9e-24 Score=188.34 Aligned_cols=209 Identities=23% Similarity=0.285 Sum_probs=177.9
Q ss_pred CcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEE
Q 048657 244 PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQ 323 (456)
Q Consensus 244 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 323 (456)
++++.++++++.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+.....+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 46888888888877655557888899999999999887 66655556788999999999998887777788899999999
Q ss_pred ccCccccccccccccCCCCCcEEEcCCCcCccc-cCccccCCCCCcEEEcCCCcccccCchhccCCCCCC----eEeCcC
Q 048657 324 LEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGR-IPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQ----ILDISD 398 (456)
Q Consensus 324 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~ 398 (456)
+++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+++|+ .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 999999866666788999999999999998853 588999999999999999999887777777777777 899999
Q ss_pred CccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCC
Q 048657 399 NNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 454 (456)
Q Consensus 399 ~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p 454 (456)
|.+++..+..+...+|++|++++|.+. .++...|..+++|+.|++++|+++...|
T Consensus 187 n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 187 NPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CcccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccccCC
Confidence 999988877777779999999999986 6777778999999999999999998766
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=2e-25 Score=202.45 Aligned_cols=248 Identities=19% Similarity=0.124 Sum_probs=187.8
Q ss_pred ccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccC-CCCchhhh------ccCCcceEEEccCCccCCCccccc-
Q 048657 193 NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFR-GHIPVEIG------DVLPSLYVFNNSMNALDGSIPSSF- 264 (456)
Q Consensus 193 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~------~~~~~L~~l~l~~~~~~~~~~~~l- 264 (456)
..++|+.+++.++.+ .++..+.. .++.|+++++.+. ..++.... ..+++|++|++++|.+.+..|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 444555555655555 23322222 2667777777663 23343332 127889999999999887777766
Q ss_pred -cCCCCCcEEeccCCcCCCcccchhhcCC-----CcccEEEccCCcccccccccccccccccEEEccCcccccc--cccc
Q 048657 265 -GNMKFLQILDLSNNHLTGEIPEHLAVGC-----VNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGE--IPQS 336 (456)
Q Consensus 265 -~~~~~L~~L~l~~~~l~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~ 336 (456)
..+++|++|++++|.+.+. +..+. .+ ++|++|++++|++.+..+..+..+++|++|++++|.+.+. .+..
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 8899999999999998844 54332 33 8999999999999988878888999999999999997654 2333
Q ss_pred c--cCCCCCcEEEcCCCcCcc---ccCccccCCCCCcEEEcCCCcccccCc-hhccCCCCCCeEeCcCCccCCCCCcccc
Q 048657 337 L--SKCSSLEGLHLNNNSLSG---RIPRWLGNLTWLQYIIMPNNHLEGLIP-VEFCQLDSLQILDISDNNISGSLPACFH 410 (456)
Q Consensus 337 ~--~~l~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 410 (456)
+ ..+++|++|++++|.+++ .....+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.++..+ ..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip-~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP-KGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCC-SSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhh-hhcc
Confidence 3 789999999999999873 222345678999999999999987664 55667899999999999998544 4333
Q ss_pred cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCC
Q 048657 411 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 451 (456)
Q Consensus 411 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 451 (456)
++|++|++++|++.+ +|. +..+++|+.|++++|++++
T Consensus 274 -~~L~~L~Ls~N~l~~-~p~--~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDR-NPS--PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SEEEEEECCSSCCCS-CCC--TTTSCEEEEEECTTCTTTC
T ss_pred -CCceEEECCCCCCCC-Chh--HhhCCCCCEEeccCCCCCC
Confidence 899999999999975 444 8889999999999999985
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=1.7e-23 Score=200.06 Aligned_cols=229 Identities=22% Similarity=0.177 Sum_probs=149.3
Q ss_pred CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEE
Q 048657 170 HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF 249 (456)
Q Consensus 170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 249 (456)
++++.|++++|.+.+..+.. +..+++|+.|++++|.+....+..+..+++|+.|++++|.+. .++...+..+++|+.|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHH-cCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEE
Confidence 46777777777766443333 456677777777777766666666667777777777777766 4444444446677777
Q ss_pred EccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccc
Q 048657 250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRF 329 (456)
Q Consensus 250 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 329 (456)
++++|.+....+..+..+++|++|+++++...+.++...+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCC
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcC
Confidence 77777666444455666777777777664333355555555666777777777766643 2345666777777777777
Q ss_pred cccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657 330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 330 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 402 (456)
.+..+..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 6555666667777777777777766666666667777777777777776666666666677777777776654
No 66
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.3e-23 Score=191.50 Aligned_cols=204 Identities=21% Similarity=0.292 Sum_probs=104.9
Q ss_pred cCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhh------
Q 048657 216 HSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA------ 289 (456)
Q Consensus 216 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~------ 289 (456)
..+++|++|++++|.+. .+|..+.. +++|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+.
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~-l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGG-GTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhc-cCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 33444444444444443 33333322 444444444444444 3344444445555555544443333333221
Q ss_pred --cCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCC
Q 048657 290 --VGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWL 367 (456)
Q Consensus 290 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 367 (456)
..+++|++|++++|.+. ..+..+..+++|++|++++|.+. .++..+..+++|++|++++|.+.+.+|..+..+++|
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 13555566666555555 23334555556666666666655 344445556666666666665555555556666666
Q ss_pred cEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCccc
Q 048657 368 QYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNML 424 (456)
Q Consensus 368 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~ 424 (456)
++|++++|.+.+..|..+..+++|+.|++++|++.+..|..+. .++++.+++..+.+
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 6666666655555555556666666666666655555554443 45556655554433
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=4.2e-25 Score=200.80 Aligned_cols=238 Identities=16% Similarity=0.139 Sum_probs=119.2
Q ss_pred ccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcE
Q 048657 193 NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI 272 (456)
Q Consensus 193 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~ 272 (456)
.+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+ ...+++|+.|+++.|.+.+ +...++|++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~-----l~~~~~L~~ 103 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQE-----LLVGPSIET 103 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEE-----EEECTTCCE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCcccc-----ccCCCCcCE
Confidence 34445555555554444443444555555555555555442221 2224555555555554432 112355556
Q ss_pred EeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccc-cCCCCCcEEEcCCC
Q 048657 273 LDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSL-SKCSSLEGLHLNNN 351 (456)
Q Consensus 273 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~ 351 (456)
|++++|.+. .++.. .+++|++|++++|.+.+.....+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|
T Consensus 104 L~l~~n~l~-~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 104 LHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp EECCSSCCS-EEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EECCCCccC-CcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 666555554 22221 24556666666665555444455555566666666665554333333 24556666666666
Q ss_pred cCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcc
Q 048657 352 SLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRG 431 (456)
Q Consensus 352 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 431 (456)
.+++. + ....+++|++|++++|.+++.++ .+..+++|+.|++++|+++..+......++|+.|++++|.+.......
T Consensus 180 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 180 FIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp CCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred cCccc-c-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 55532 2 22235566666666666654332 355556666666666665544333333455666666666554122222
Q ss_pred cccCCCcceEEEcc
Q 048657 432 TFFNCSSLVTLDLS 445 (456)
Q Consensus 432 ~~~~~~~L~~L~l~ 445 (456)
.+..+++|+.++++
T Consensus 257 ~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 257 FFSKNQRVQTVAKQ 270 (317)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHhccccceEEECC
Confidence 34555555555555
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=9.9e-25 Score=198.35 Aligned_cols=224 Identities=21% Similarity=0.194 Sum_probs=187.5
Q ss_pred ccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCc
Q 048657 215 IHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 294 (456)
Q Consensus 215 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 294 (456)
+..+++|++|++++|.+.+ ++......+++|+.|++++|.+.+..+ +..+++|++|++++|.+. .++ ..++
T Consensus 30 ~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~-~l~-----~~~~ 100 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPS 100 (317)
T ss_dssp HTTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEE-EEE-----ECTT
T ss_pred hccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccc-ccc-----CCCC
Confidence 4567899999999999984 444444458999999999999875443 889999999999999887 444 3489
Q ss_pred ccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccc-cCCCCCcEEEcC
Q 048657 295 LESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWL-GNLTWLQYIIMP 373 (456)
Q Consensus 295 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~ 373 (456)
|++|++++|.+.+.... .+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+ ..+++|++|+++
T Consensus 101 L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp CCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred cCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 99999999999876544 36889999999999997777788899999999999999987766666 478999999999
Q ss_pred CCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccC-CC
Q 048657 374 NNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN-GS 452 (456)
Q Consensus 374 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~ 452 (456)
+|.+++.. ....+++|+.|++++|++++.++....+++|+.|++++|.+. .++.. +..+++|+.|++++|+++ +.
T Consensus 178 ~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~-~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 178 YNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp TSCCCEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTT-CCCCTTCCEEECTTCCCBHHH
T ss_pred CCcCcccc--cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhH-hhcCCCCCEEEccCCCccCcC
Confidence 99998653 333589999999999999987776556889999999999996 67766 888999999999999987 43
Q ss_pred CC
Q 048657 453 IP 454 (456)
Q Consensus 453 ~p 454 (456)
+|
T Consensus 254 ~~ 255 (317)
T 3o53_A 254 LR 255 (317)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=7.8e-23 Score=200.31 Aligned_cols=265 Identities=27% Similarity=0.293 Sum_probs=162.0
Q ss_pred CccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEc
Q 048657 21 SLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELML 100 (456)
Q Consensus 21 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l 100 (456)
++++|+++++.++.++. .+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .++. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~~lp~-~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPD-CLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSCCCS-CCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCCcCccCh-hhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEEC
Confidence 58888888888887775 333 78888888888887 4444 4678888888888887 5664 5678888888
Q ss_pred CCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCc
Q 048657 101 SNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHI 180 (456)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 180 (456)
++|.+.. .+. .+++|+.|++++|.+.. ++. .+++|+.|++++|
T Consensus 109 s~N~l~~-l~~----~l~~L~~L~L~~N~l~~-----------------------------lp~---~l~~L~~L~Ls~N 151 (622)
T 3g06_A 109 FSNPLTH-LPA----LPSGLCKLWIFGNQLTS-----------------------------LPV---LPPGLQELSVSDN 151 (622)
T ss_dssp CSCCCCC-CCC----CCTTCCEEECCSSCCSC-----------------------------CCC---CCTTCCEEECCSS
T ss_pred cCCcCCC-CCC----CCCCcCEEECCCCCCCc-----------------------------CCC---CCCCCCEEECcCC
Confidence 8887762 211 45666666666665431 010 1245566666555
Q ss_pred ccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCc
Q 048657 181 KMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSI 260 (456)
Q Consensus 181 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 260 (456)
.+.+ ++. .+++|+.|++++|.+. .+| ..+++|+.|++++|.+.+ +
T Consensus 152 ~l~~-l~~----------------------------~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l 196 (622)
T 3g06_A 152 QLAS-LPA----------------------------LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS-L 196 (622)
T ss_dssp CCSC-CCC----------------------------CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-C
T ss_pred cCCC-cCC----------------------------ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC-C
Confidence 5431 110 1245556666666555 333 224566666666665553 2
Q ss_pred cccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCC
Q 048657 261 PSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKC 340 (456)
Q Consensus 261 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 340 (456)
+. ..++|+.|++++|.+. .++. .+++|++|++++|.++... ..+++|+.|++++|.++ .+|. .+
T Consensus 197 ~~---~~~~L~~L~L~~N~l~-~l~~----~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~-~lp~---~~ 260 (622)
T 3g06_A 197 PT---LPSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLT-SLPM---LP 260 (622)
T ss_dssp CC---CCTTCCEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-CCCC---CC
T ss_pred CC---ccchhhEEECcCCccc-ccCC----CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCC-cCCc---cc
Confidence 22 2356666777666665 4442 2456677777766665432 24466777777777665 3443 45
Q ss_pred CCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhcc
Q 048657 341 SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFC 386 (456)
Q Consensus 341 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 386 (456)
++|+.|++++|.++ .+|..+.++++|+.|++++|.+++..+..+.
T Consensus 261 ~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 261 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred ccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 66777777777666 5566666777777777777776655555444
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.5e-22 Score=198.29 Aligned_cols=241 Identities=24% Similarity=0.263 Sum_probs=179.8
Q ss_pred CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEE
Q 048657 170 HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF 249 (456)
Q Consensus 170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 249 (456)
++|+.|++++|.+. .++. .+++|+.|++++|.+..... .+++|++|++++|.+. .+|. .+++|+.|
T Consensus 61 ~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLT-HLPA----LPSGLCKL 126 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCC-CCCC----CCTTCCEE
T ss_pred CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCC-CCCC----CCCCcCEE
Confidence 57788888888765 3333 56778888888887764332 5678888888888877 4444 36788888
Q ss_pred EccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccc
Q 048657 250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRF 329 (456)
Q Consensus 250 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 329 (456)
++++|.+.. +|.. +++|++|++++|.+. .++. .+++|+.|++++|.++... ..+++|+.|++++|.+
T Consensus 127 ~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 127 WIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQL 193 (622)
T ss_dssp ECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCC
T ss_pred ECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCC
Confidence 888888764 4432 488889999888877 4543 3567888999888887644 3468889999999888
Q ss_pred cccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCccc
Q 048657 330 VGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF 409 (456)
Q Consensus 330 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 409 (456)
.+ ++. ..++|+.|++++|.++ .++. .+++|+.|++++|.+++. | ..+++|+.|++++|.++..+.
T Consensus 194 ~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~l-p---~~l~~L~~L~Ls~N~L~~lp~--- 258 (622)
T 3g06_A 194 AS-LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTSL-P---VLPSELKELMVSGNRLTSLPM--- 258 (622)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC---
T ss_pred CC-CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCcC-C---CCCCcCcEEECCCCCCCcCCc---
Confidence 73 443 3478899999998887 4443 247899999999988754 3 456789999999998886544
Q ss_pred ccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCC
Q 048657 410 HPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 454 (456)
Q Consensus 410 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p 454 (456)
.+++|+.|++++|.+. .+|.. |.++++|+.|++++|++++.+|
T Consensus 259 ~~~~L~~L~Ls~N~L~-~lp~~-l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 259 LPSGLLSLSVYRNQLT-RLPES-LIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CCTTCCEEECCSSCCC-SCCGG-GGGSCTTCEEECCSCCCCHHHH
T ss_pred ccccCcEEeCCCCCCC-cCCHH-HhhccccCEEEecCCCCCCcCH
Confidence 5678999999999886 67765 8888999999999998886544
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=7.7e-24 Score=203.40 Aligned_cols=238 Identities=16% Similarity=0.133 Sum_probs=145.2
Q ss_pred ccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcE
Q 048657 193 NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI 272 (456)
Q Consensus 193 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~ 272 (456)
.+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+ ...+++|+.|++++|.+.+. ...++|+.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l-----~~~~~L~~ 103 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQEL-----LVGPSIET 103 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEE-----EECTTCCE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCC-----CCCCCcCE
Confidence 34467777777777766666666777777777777776653333 23366777777777665532 12366777
Q ss_pred EeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcccccccccccc-CCCCCcEEEcCCC
Q 048657 273 LDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLS-KCSSLEGLHLNNN 351 (456)
Q Consensus 273 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~ 351 (456)
|++++|.+. .++.. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .+++|++|++++|
T Consensus 104 L~L~~N~l~-~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 104 LHAANNNIS-RVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp EECCSSCCC-CEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EECcCCcCC-CCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 777777665 33321 346677777777776666555666667777777777776655555554 5667777777777
Q ss_pred cCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcc
Q 048657 352 SLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRG 431 (456)
Q Consensus 352 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 431 (456)
.+++. + ....+++|+.|++++|.+++.++ .+..+++|+.|++++|.+++.+.....+++|+.+++++|.+.......
T Consensus 180 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 180 FIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc-c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 66633 2 23346677777777777665433 366666777777777776654444334566777777776664122222
Q ss_pred cccCCCcceEEEcc
Q 048657 432 TFFNCSSLVTLDLS 445 (456)
Q Consensus 432 ~~~~~~~L~~L~l~ 445 (456)
.+..++.|+.++++
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 35556666666554
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=5.4e-22 Score=176.01 Aligned_cols=201 Identities=23% Similarity=0.292 Sum_probs=140.5
Q ss_pred cccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEE
Q 048657 220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLA 299 (456)
Q Consensus 220 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~ 299 (456)
..+.++++++.++ .+|..+. ++++.|+++++.+....+..+..+++|++|++++|.+. .++...+..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence 4667888887776 5565432 57788888888777655557777888888888887776 66666555677777777
Q ss_pred ccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccc
Q 048657 300 LSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEG 379 (456)
Q Consensus 300 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 379 (456)
+++|.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 77777776665666667777777777777765555566777777777777777765555556777777777777777776
Q ss_pred cCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccC
Q 048657 380 LIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLH 425 (456)
Q Consensus 380 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~ 425 (456)
..+..|..+++|+.|++++|++++.++..+. .++|+.|++++|.+.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 6666666777777777777777665554443 566777777777664
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=2e-23 Score=189.26 Aligned_cols=225 Identities=20% Similarity=0.230 Sum_probs=114.6
Q ss_pred ccEEEecCccccc-ccchhhh------hccccceeeeecccCcCCCCCcCc--cCCccccEEeCCCCccCCCCchhhhcc
Q 048657 172 LEYVDLSHIKMNG-EFPTWLL------ENNTKLIQLSVVNDSLAGPFRLPI--HSHKQLRLLDISTNNFRGHIPVEIGDV 242 (456)
Q Consensus 172 L~~L~l~~~~~~~-~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~ 242 (456)
++.|+++++.+.. .++.... ..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+. |..+...
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 6666666666532 2332221 146777777777777766555554 6777777777777777643 5444331
Q ss_pred ----CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcc--cch-hhcCCCcccEEEccCCccccc---cccc
Q 048657 243 ----LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEI--PEH-LAVGCVNLESLALSNNNLEGH---MFSR 312 (456)
Q Consensus 243 ----~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~--~~~-~~~~~~~L~~L~l~~~~~~~~---~~~~ 312 (456)
.++|++|++++|.+.+..+..+..+++|++|++++|.+.+.. +.. .+..+++|++|++++|.+... ....
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 156666666666666555566666666666666666554221 111 113455555555555555421 1112
Q ss_pred ccccccccEEEccCcccccccc-ccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCC
Q 048657 313 NFNLANLKLLQLEGNRFVGEIP-QSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSL 391 (456)
Q Consensus 313 ~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 391 (456)
+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence 2234445555555554443322 22333444444444444444 3333333 4444444444444433 22 4444444
Q ss_pred CeEeCcCCccC
Q 048657 392 QILDISDNNIS 402 (456)
Q Consensus 392 ~~L~l~~~~l~ 402 (456)
+.|++++|+++
T Consensus 299 ~~L~L~~N~l~ 309 (312)
T 1wwl_A 299 GNLSLKGNPFL 309 (312)
T ss_dssp EEEECTTCTTT
T ss_pred CEEeccCCCCC
Confidence 44444444443
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1e-22 Score=180.74 Aligned_cols=204 Identities=22% Similarity=0.233 Sum_probs=98.9
Q ss_pred cCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcc
Q 048657 216 HSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL 295 (456)
Q Consensus 216 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L 295 (456)
..+++|+.|++.++.+. .++ .+ ..+++|+.+++++|.+.+. ..+..+++|++|++++|.+. .++...+..+++|
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~-~l-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 111 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQ-GI-QYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNL 111 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTC
T ss_pred ccccceeeeeeCCCCcc-ccc-cc-ccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCC
Confidence 34555666666665544 222 11 2245555555555555431 24455555555555555554 3333333345555
Q ss_pred cEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCC
Q 048657 296 ESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN 375 (456)
Q Consensus 296 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 375 (456)
++|++++|.+.+.....+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 55555555555444444444555555555555554333333445555555555555554444444445555555555555
Q ss_pred cccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcc
Q 048657 376 HLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRG 431 (456)
Q Consensus 376 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 431 (456)
.+.+..+..+..+++|+.|++++|++.+. ++.++.+++..|.+.|.+|..
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCC------TTTTHHHHHHHHHTGGGBBCT
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCcccc------CcHHHHHHHHHHhCCCcccCc
Confidence 55544444444555555555555544422 223444444444444444443
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=5.2e-23 Score=197.64 Aligned_cols=234 Identities=21% Similarity=0.197 Sum_probs=168.0
Q ss_pred CCccEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEE
Q 048657 170 HDLEYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVF 249 (456)
Q Consensus 170 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l 249 (456)
++|+.|++++|.+.+..+.. +..+++|+.|++++|.+....+ +..+++|+.|++++|.+. .++. .++|+.|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~~L 104 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAAD-LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIETL 104 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGG-GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCCEE
T ss_pred CCccEEEeeCCcCCCCCHHH-HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcCEE
Confidence 37888888888877554443 4778888888888888765443 778888888888888776 2332 3788888
Q ss_pred EccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCccccccccccc-ccccccEEEccCcc
Q 048657 250 NNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNF-NLANLKLLQLEGNR 328 (456)
Q Consensus 250 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 328 (456)
++++|.+.+..+. .+++|+.|++++|.+.+ .+...+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCS-GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCC-CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 8888887754432 45778888888888874 3333334678888888888888876666654 67888888888888
Q ss_pred ccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC-CCCCc
Q 048657 329 FVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS-GSLPA 407 (456)
Q Consensus 329 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~ 407 (456)
+++. + ....+++|+.|++++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +..+.
T Consensus 181 l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred cccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 8744 2 23458888888888888874 44457788888888888888875 4556777888888888888876 22222
Q ss_pred cc-ccccccEEEcc
Q 048657 408 CF-HPLSIKQVHLS 420 (456)
Q Consensus 408 ~~-~~~~L~~l~l~ 420 (456)
.+ ..+.++.+++.
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 22 24566666664
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.7e-21 Score=172.74 Aligned_cols=204 Identities=24% Similarity=0.246 Sum_probs=159.0
Q ss_pred cceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEec
Q 048657 196 KLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 275 (456)
Q Consensus 196 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l 275 (456)
..+.++++++.++.. +..+ .+.++.|+++++.+. .++...+..+++|+.|+++++.+....+..+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~~i-p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAI-PSNI--PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSC-CSCC--CTTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCcc-CCCC--CCCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 456778877776643 3222 257888999888887 455444445788999999888887555556678888999999
Q ss_pred cCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCcc
Q 048657 276 SNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSG 355 (456)
Q Consensus 276 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 355 (456)
++|.+. .++...+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 93 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 93 TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 888887 6666666678889999999988887777777788889999999988885555567888899999999988886
Q ss_pred ccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCC
Q 048657 356 RIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGS 404 (456)
Q Consensus 356 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 404 (456)
..+..|..+++|+.|++++|.+++.++..+..+++|+.|++++|++...
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 6666788888999999999988877777788888899999998887644
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=3.6e-21 Score=172.07 Aligned_cols=201 Identities=20% Similarity=0.171 Sum_probs=107.5
Q ss_pred cCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcc
Q 048657 216 HSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNL 295 (456)
Q Consensus 216 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L 295 (456)
+.+++++.+++.++.+. .+|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.+. .++.. ..+++|
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L 79 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL 79 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred cccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence 34445555555555554 3443322 35555555555555444455555566666666655554 33322 245556
Q ss_pred cEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCC
Q 048657 296 ESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN 375 (456)
Q Consensus 296 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 375 (456)
++|++++|.+... +..+..+++|+.|++++|.+++..+..|..+++|++|++++|+++...+..|..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 6666666555432 233445555666666666555444445555566666666666555444444555556666666666
Q ss_pred cccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCccc
Q 048657 376 HLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNML 424 (456)
Q Consensus 376 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~ 424 (456)
+++..++..+..+++|+.|++++|+++..+...+...+|+.+++++|.+
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 6554444445555566666666666555444444455556666655554
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=5.8e-21 Score=170.68 Aligned_cols=199 Identities=23% Similarity=0.222 Sum_probs=173.2
Q ss_pred CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657 243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL 322 (456)
Q Consensus 243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 322 (456)
+++++.++++.+.+. .+|..+ .+.++.|++++|.+. .++...+..+++|++|++++|.++..... ..+++|+.|
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEE
T ss_pred cCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEE
Confidence 678999999999887 455544 378999999999998 55555556899999999999999875443 678999999
Q ss_pred EccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657 323 QLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 323 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 402 (456)
++++|.+. .+|..+..+++|++|++++|+++...+..|..+++|+.|++++|.+++.++..|..+++|+.|++++|+++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 99999998 67888899999999999999999777788999999999999999999888888899999999999999999
Q ss_pred CCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccC
Q 048657 403 GSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLN 450 (456)
Q Consensus 403 ~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 450 (456)
+.+...+. .++|+.|++++|.+. .+|.+ +...++|+.|++++|++.
T Consensus 162 ~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~-~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKG-FFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTT-TTTTCCCSEEECCSCCBC
T ss_pred ccCHHHhcCcCCCCEEECCCCcCC-ccChh-hcccccCCeEEeCCCCcc
Confidence 87776655 789999999999996 78887 455789999999999875
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=3.9e-21 Score=170.55 Aligned_cols=201 Identities=22% Similarity=0.225 Sum_probs=142.9
Q ss_pred CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657 243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL 322 (456)
Q Consensus 243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 322 (456)
+++++.+++.++.+.. ...+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+.....+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 5677777777776652 234667777888888777776 333 23467778888888777776666666677778888
Q ss_pred EccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657 323 QLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 323 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 402 (456)
++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 88887777555555677777888888877777555666677778888888888777666666777777888888887777
Q ss_pred CCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCCCC
Q 048657 403 GSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPDW 456 (456)
Q Consensus 403 ~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~~ 456 (456)
+.++..+. +++|+.|++++|.+. +.+++++.++++.|.++|.+|.|
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred ccCHHHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHHHhCCCcccCc
Confidence 76665443 667788888777664 34567777777777777777754
No 80
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=7.9e-21 Score=169.23 Aligned_cols=203 Identities=21% Similarity=0.206 Sum_probs=102.3
Q ss_pred cccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEE
Q 048657 220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLA 299 (456)
Q Consensus 220 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~ 299 (456)
.+++|++++|.+. .++......+++|+.+++++|.+....+..+..+++|++|++++|.+. .++...+..+++|++|+
T Consensus 29 ~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred CccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEE
Confidence 4555555555544 222222222455555555555544333344555555555555555554 33333333455555555
Q ss_pred ccCCcccccccccccccccccEEEccCcccccc-ccccccCCCCCcEEEcCCCcCccccCccccCCCCCc----EEEcCC
Q 048657 300 LSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGE-IPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQ----YIIMPN 374 (456)
Q Consensus 300 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~ 374 (456)
+++|.+.......+..+++|++|++++|.+.+. .|..+..+++|++|++++|.+++..+..+..+++|+ .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 555555544444455555556666655555432 345555556666666666655544444444444444 555666
Q ss_pred CcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccC
Q 048657 375 NHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLH 425 (456)
Q Consensus 375 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~ 425 (456)
|.+.+..+..+. ..+|+.|++++|.+++.++..+. .++|+.|++++|++.
T Consensus 187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 655544333332 23566666666655554444332 455666666665554
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=8.3e-21 Score=166.38 Aligned_cols=178 Identities=23% Similarity=0.274 Sum_probs=94.7
Q ss_pred CcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcC
Q 048657 270 LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLN 349 (456)
Q Consensus 270 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 349 (456)
.++++++++.+. .+|..+ .+++++|++++|.+.+.....+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 344555555444 444322 2345555555555554444445555555555555555554444445555555555555
Q ss_pred CCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCC
Q 048657 350 NNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQL 428 (456)
Q Consensus 350 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~ 428 (456)
+|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.++..+. .++|+.|++++|.+. .+
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~ 170 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SV 170 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-cc
Confidence 5555544444555555566666665555554444455555566666666655554443332 455666666666554 34
Q ss_pred CcccccCCCcceEEEccCcccCCC
Q 048657 429 KRGTFFNCSSLVTLDLSYNRLNGS 452 (456)
Q Consensus 429 ~~~~~~~~~~L~~L~l~~~~l~~~ 452 (456)
+...|..+++|+.|++++|++...
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 444455556666666666665543
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=2.3e-21 Score=175.66 Aligned_cols=226 Identities=16% Similarity=0.118 Sum_probs=175.1
Q ss_pred cccEEeCCCCccCCCCchhhh--ccCCcceEEEccCCccCCCccccc--cCCCCCcEEeccCCcCCCccc---chhhcCC
Q 048657 220 QLRLLDISTNNFRGHIPVEIG--DVLPSLYVFNNSMNALDGSIPSSF--GNMKFLQILDLSNNHLTGEIP---EHLAVGC 292 (456)
Q Consensus 220 ~L~~L~l~~~~~~~~~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~l~~~~~---~~~~~~~ 292 (456)
.++.+.+.++.+.+.....+. ..+++|+++++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ......+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 466677776655421111111 124679999999999888888777 889999999999999875433 1222368
Q ss_pred CcccEEEccCCcccccccccccccccccEEEccCcccccc--c--cccccCCCCCcEEEcCCCcCccccCc----cccCC
Q 048657 293 VNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGE--I--PQSLSKCSSLEGLHLNNNSLSGRIPR----WLGNL 364 (456)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~ 364 (456)
++|++|++++|.+....+..+..+++|++|++++|.+.+. . +..+..+++|++|++++|.++ ..+. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcC
Confidence 8999999999999888878888999999999999987542 2 233468899999999999986 3332 35678
Q ss_pred CCCcEEEcCCCcccccCchhccCC---CCCCeEeCcCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceE
Q 048657 365 TWLQYIIMPNNHLEGLIPVEFCQL---DSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVT 441 (456)
Q Consensus 365 ~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~ 441 (456)
++|++|++++|.+++..|..+..+ ++|++|++++|+++..+. .+ +++|++|++++|++.+ ++. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~-~~-~~~L~~L~Ls~N~l~~-~~~--~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK-GL-PAKLRVLDLSSNRLNR-APQ--PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS-CC-CSCCSCEECCSCCCCS-CCC--TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh-hh-cCCCCEEECCCCcCCC-Cch--hhhCCCccE
Confidence 999999999999998767666665 799999999999995543 33 4799999999999964 333 578899999
Q ss_pred EEccCcccCC
Q 048657 442 LDLSYNRLNG 451 (456)
Q Consensus 442 L~l~~~~l~~ 451 (456)
|++++|+++.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999985
No 83
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=2.2e-22 Score=184.95 Aligned_cols=255 Identities=14% Similarity=0.156 Sum_probs=169.2
Q ss_pred CCccEEEecCcccccccchhhhhcc--ccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcce
Q 048657 170 HDLEYVDLSHIKMNGEFPTWLLENN--TKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLY 247 (456)
Q Consensus 170 ~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 247 (456)
...+.++++++.+.. ...... +.++.+++.++.+....+. +..+++|++|++++|.+.+.........+++|+
T Consensus 47 ~~~~~l~l~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP----DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCCH----HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCCH----HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 347888988876642 223344 7788888888877665444 456788888888888766431223334478888
Q ss_pred EEEccCCccCCCccccccCCCCCcEEeccCC-cCCCcccchhhcCCCcccEEEccCC-ccccc-ccccccccc-cccEEE
Q 048657 248 VFNNSMNALDGSIPSSFGNMKFLQILDLSNN-HLTGEIPEHLAVGCVNLESLALSNN-NLEGH-MFSRNFNLA-NLKLLQ 323 (456)
Q Consensus 248 ~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~ 323 (456)
.|++++|.+.+..+..+..+++|++|++++| .+.+.........+++|++|++++| .+++. ....+..++ +|++|+
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~ 201 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN 201 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence 8888888777666777777888888888888 5553223333446788888888888 77653 344456677 888888
Q ss_pred ccCcc--cc-ccccccccCCCCCcEEEcCCCc-CccccCccccCCCCCcEEEcCCCc-ccccCchhccCCCCCCeEeCcC
Q 048657 324 LEGNR--FV-GEIPQSLSKCSSLEGLHLNNNS-LSGRIPRWLGNLTWLQYIIMPNNH-LEGLIPVEFCQLDSLQILDISD 398 (456)
Q Consensus 324 l~~~~--~~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~ 398 (456)
+++|. ++ ...+..+.++++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++
T Consensus 202 l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 202 LSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 281 (336)
T ss_dssp CCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred eCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence 88884 43 2345566678888888888887 666666777788888888888874 3322233566778888888888
Q ss_pred CccCCCCCcccccccccEEEccCcccCCCCCcc
Q 048657 399 NNISGSLPACFHPLSIKQVHLSKNMLHGQLKRG 431 (456)
Q Consensus 399 ~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 431 (456)
| ++......+ ...+..|++++|.+++..+..
T Consensus 282 ~-i~~~~~~~l-~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 282 I-VPDGTLQLL-KEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp S-SCTTCHHHH-HHHSTTSEESCCCSCCTTCSS
T ss_pred c-cCHHHHHHH-HhhCcceEEecccCccccCCc
Confidence 7 332111110 234666777777776555544
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=2.3e-22 Score=188.28 Aligned_cols=136 Identities=15% Similarity=0.193 Sum_probs=66.1
Q ss_pred ccccEEEccCccccc-ccc---ccccCCCCCcEEEcCCCcCcc-----ccCccccCCCCCcEEEcCCCccc----ccCch
Q 048657 317 ANLKLLQLEGNRFVG-EIP---QSLSKCSSLEGLHLNNNSLSG-----RIPRWLGNLTWLQYIIMPNNHLE----GLIPV 383 (456)
Q Consensus 317 ~~L~~L~l~~~~~~~-~~~---~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~ 383 (456)
++|++|++++|.+.. ..+ ..+..+++|++|++++|.++. ..+..+..+++|+.|++++|.++ ...+.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 455555555555531 111 234445555555555555542 12224455555555555555553 23344
Q ss_pred hccCCCCCCeEeCcCCccCCCC----Ccc---cccccccEEEccCcccCC----CCCcccccCCCcceEEEccCcccCCC
Q 048657 384 EFCQLDSLQILDISDNNISGSL----PAC---FHPLSIKQVHLSKNMLHG----QLKRGTFFNCSSLVTLDLSYNRLNGS 452 (456)
Q Consensus 384 ~~~~~~~L~~L~l~~~~l~~~~----~~~---~~~~~L~~l~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~l~~~ 452 (456)
.+..+++|+.|++++|.+++.. +.. ...++|+.|++++|.+.+ .++...+.++++|+.|++++|++++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 4555555555555555554331 111 113455555555555543 24444334456666666666666544
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=4.8e-20 Score=166.43 Aligned_cols=194 Identities=21% Similarity=0.298 Sum_probs=130.4
Q ss_pred ccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCc
Q 048657 215 IHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVN 294 (456)
Q Consensus 215 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 294 (456)
...+++|++|++.++.+. .++ .+ ..+++|+.|++++|.+.+..+ +..+++|++|++++|.+. .++. +..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~-~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GV-QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSA--IAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TG-GGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCGG--GTTCTT
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hh-hccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cchh--hcCCCC
Confidence 345678888888888776 344 22 336778888888777764333 777778888888877776 4432 345777
Q ss_pred ccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCC
Q 048657 295 LESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374 (456)
Q Consensus 295 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 374 (456)
|++|++++|.+.+.. .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. +. +..+++|+.|++++
T Consensus 109 L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~ 182 (308)
T 1h6u_A 109 IKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADD 182 (308)
T ss_dssp CCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCS
T ss_pred CCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCC
Confidence 777777777776533 25667777777777777763322 66777777777777777643 22 67777777777777
Q ss_pred CcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccC
Q 048657 375 NHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLH 425 (456)
Q Consensus 375 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~ 425 (456)
|.+++..+ +..+++|+.|++++|++++..+ ...+++|+.|++++|.+.
T Consensus 183 n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp SCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred CccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence 77765433 6667777777777777775542 334667777777777774
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=1.5e-20 Score=163.51 Aligned_cols=198 Identities=16% Similarity=0.120 Sum_probs=157.9
Q ss_pred CCcceEEEccCCccCCCccccccCCCCCcEEeccCCc-CCCcccchhhcCCCcccEEEccC-Cccccccccccccccccc
Q 048657 243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNH-LTGEIPEHLAVGCVNLESLALSN-NNLEGHMFSRNFNLANLK 320 (456)
Q Consensus 243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~ 320 (456)
.++++.++++++.+.+..+..+..+++|++|++++|. +. .++...+..+++|++|++++ |.+.......+..+++|+
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 3589999999998886666678889999999999986 76 67766666888999999998 888877767788889999
Q ss_pred EEEccCccccccccccccCCCCCc---EEEcCCC-cCccccCccccCCCCCc-EEEcCCCcccccCchhccCCCCCCeEe
Q 048657 321 LLQLEGNRFVGEIPQSLSKCSSLE---GLHLNNN-SLSGRIPRWLGNLTWLQ-YIIMPNNHLEGLIPVEFCQLDSLQILD 395 (456)
Q Consensus 321 ~L~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~ 395 (456)
+|++++|.+.+ +|. +..+++|+ +|++++| .+++..+..|..+++|+ .|++++|.++...+..+.. ++|+.|+
T Consensus 109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence 99999998874 554 77888887 9999998 88766666788899999 9999999888665555655 7899999
Q ss_pred CcCCc-cCCCCCcccc-c-ccccEEEccCcccCCCCCcccccCCCcceEEEccCcc
Q 048657 396 ISDNN-ISGSLPACFH-P-LSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNR 448 (456)
Q Consensus 396 l~~~~-l~~~~~~~~~-~-~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 448 (456)
+++|+ +++.++..+. . ++|+.|++++|.+. .++.. .+++|+.|+++++.
T Consensus 186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT---TCTTCSEEECTTC-
T ss_pred cCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh---HhccCceeeccCcc
Confidence 99995 8876666554 5 78999999999885 56654 57788888888763
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=9.8e-22 Score=182.05 Aligned_cols=250 Identities=16% Similarity=0.123 Sum_probs=137.3
Q ss_pred EEecCcccccccchhhhhccccceeeeecccCcCCCCC----cCccCCc-cccEEeCCCCccCCCCchhhhcc----CCc
Q 048657 175 VDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFR----LPIHSHK-QLRLLDISTNNFRGHIPVEIGDV----LPS 245 (456)
Q Consensus 175 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~----~~~ 245 (456)
.+++.+.+.+.++.. ....+.|++|++++|.+..... ..+..++ +|++|++++|.+.+..+..+... .++
T Consensus 3 ~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 456666666554443 3445557777777777665544 4455666 67777777777765444444332 266
Q ss_pred ceEEEccCCccCCCcccc----ccCC-CCCcEEeccCCcCCCcccchhh---cC-CCcccEEEccCCccccccccc----
Q 048657 246 LYVFNNSMNALDGSIPSS----FGNM-KFLQILDLSNNHLTGEIPEHLA---VG-CVNLESLALSNNNLEGHMFSR---- 312 (456)
Q Consensus 246 L~~l~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~l~~~~~~~~~---~~-~~~L~~L~l~~~~~~~~~~~~---- 312 (456)
|+.|++++|.+.+..+.. +..+ ++|++|++++|.+.+..+..+. .. +.+|++|++++|.+.+.....
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 777777777666444432 2333 6677777777766533222221 12 246777777777666432222
Q ss_pred ccccc-cccEEEccCccccccccc----cccCC-CCCcEEEcCCCcCccc----cCccccC-CCCCcEEEcCCCcccccC
Q 048657 313 NFNLA-NLKLLQLEGNRFVGEIPQ----SLSKC-SSLEGLHLNNNSLSGR----IPRWLGN-LTWLQYIIMPNNHLEGLI 381 (456)
Q Consensus 313 ~~~~~-~L~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~ 381 (456)
+...+ +|++|++++|.+++..+. .+..+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 22333 667777777666544332 23334 3666777776666542 2333333 346666666666665443
Q ss_pred c----hhccCCCCCCeEeCcCCccCCCCCcc--------cccccccEEEccCcccC
Q 048657 382 P----VEFCQLDSLQILDISDNNISGSLPAC--------FHPLSIKQVHLSKNMLH 425 (456)
Q Consensus 382 ~----~~~~~~~~L~~L~l~~~~l~~~~~~~--------~~~~~L~~l~l~~~~~~ 425 (456)
+ ..+..+++|+.|++++|.+....... ...++|+.+|+++|.+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 3 22345566666666666643332211 12445666666666654
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=169.48 Aligned_cols=228 Identities=17% Similarity=0.155 Sum_probs=117.5
Q ss_pred CCccEEEecCcccccccchhh--hhccccceeeeecccCcCCCCCcCc--cCCccccEEeCCCCccCCCCch---hhhcc
Q 048657 170 HDLEYVDLSHIKMNGEFPTWL--LENNTKLIQLSVVNDSLAGPFRLPI--HSHKQLRLLDISTNNFRGHIPV---EIGDV 242 (456)
Q Consensus 170 ~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~---~~~~~ 242 (456)
..++.+.+.++.+.+.....+ ....++|++|++++|.+....+..+ ..+++|++|++++|.+.+..+. .....
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 357778887776643222111 1244568888888888777666666 7788888888888887743331 11113
Q ss_pred CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCc--ccc-hhhcCCCcccEEEccCCcccccccc---ccccc
Q 048657 243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGE--IPE-HLAVGCVNLESLALSNNNLEGHMFS---RNFNL 316 (456)
Q Consensus 243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~--~~~-~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~ 316 (456)
+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+. ++. .....+++|++|++++|+++..... .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 56666666666666655555666666666666666654321 111 1112345555555555554321110 12334
Q ss_pred ccccEEEccCccccccccccccCC---CCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCe
Q 048657 317 ANLKLLQLEGNRFVGEIPQSLSKC---SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQI 393 (456)
Q Consensus 317 ~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 393 (456)
++|++|++++|.+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|.+++.. .+..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~--~~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAP--QPDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCC--CTTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCc--hhhhCCCccE
Confidence 445555555555443333333333 34445555544444 3333332 34444444444444321 1334444444
Q ss_pred EeCcCCccC
Q 048657 394 LDISDNNIS 402 (456)
Q Consensus 394 L~l~~~~l~ 402 (456)
|++++|+++
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 444444443
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=3.1e-21 Score=177.19 Aligned_cols=248 Identities=16% Similarity=0.115 Sum_probs=138.3
Q ss_pred ceeeeecccCcCCCCCcCccCC--ccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCC-ccccccCCCCCcEE
Q 048657 197 LIQLSVVNDSLAGPFRLPIHSH--KQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGS-IPSSFGNMKFLQIL 273 (456)
Q Consensus 197 L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~l~~~~~L~~L 273 (456)
++.++++.+.+. +..+..+ +.++.+++.++.+.+..+. ... +++|+.+++++|.+.+. ++..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~-~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFS-PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCC-CBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hcc-CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 556666655443 1223333 5666677766666543333 222 56677777776665543 55556666777777
Q ss_pred eccCCcCCCcccchhhcCCCcccEEEccCC-ccccc-ccccccccccccEEEccCc-ccccc-ccccccCCC-CCcEEEc
Q 048657 274 DLSNNHLTGEIPEHLAVGCVNLESLALSNN-NLEGH-MFSRNFNLANLKLLQLEGN-RFVGE-IPQSLSKCS-SLEGLHL 348 (456)
Q Consensus 274 ~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~l 348 (456)
++++|.+.+..+..+ ..+++|++|++++| .+++. ....+..+++|++|++++| .+++. .+..+..++ +|++|++
T Consensus 124 ~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred eCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 777666653333333 24666777777766 44432 3333455666777777776 65532 344456666 7777777
Q ss_pred CCC--cCc-cccCccccCCCCCcEEEcCCCc-ccccCchhccCCCCCCeEeCcCCc-cCCCCC-cccccccccEEEccCc
Q 048657 349 NNN--SLS-GRIPRWLGNLTWLQYIIMPNNH-LEGLIPVEFCQLDSLQILDISDNN-ISGSLP-ACFHPLSIKQVHLSKN 422 (456)
Q Consensus 349 ~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~-~~~~~~~L~~l~l~~~ 422 (456)
++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +..... ....+++|++|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 766 343 2344555566677777777766 554555566666677777777664 221111 1112566777777766
Q ss_pred ccCCCCCcccccCC-CcceEEEccCcccCCCCCC
Q 048657 423 MLHGQLKRGTFFNC-SSLVTLDLSYNRLNGSIPD 455 (456)
Q Consensus 423 ~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~p~ 455 (456)
+ +...+..+ .++..|++++|.+++..|.
T Consensus 283 -i----~~~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 283 -V----PDGTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp -S----CTTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred -c----CHHHHHHHHhhCcceEEecccCccccCC
Confidence 2 22222222 2244455666667666664
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.1e-20 Score=162.59 Aligned_cols=196 Identities=17% Similarity=0.180 Sum_probs=123.5
Q ss_pred cccEEeCCCCccCCCCchhhhccCCcceEEEccCCc-cCCCccccccCCCCCcEEeccC-CcCCCcccchhhcCCCcccE
Q 048657 220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNA-LDGSIPSSFGNMKFLQILDLSN-NHLTGEIPEHLAVGCVNLES 297 (456)
Q Consensus 220 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~l~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~L~~ 297 (456)
+++.|+++++.+. .++...+..+++|+.+++++|. +....+..+..+++|++|++++ +.+. .++...+..+++|++
T Consensus 32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence 6777777777766 4444333346777777777775 5544444666777777777776 6665 555544556677777
Q ss_pred EEccCCccccccccccccccccc---EEEccCc-cccccccccccCCCCCc-EEEcCCCcCccccCccccCCCCCcEEEc
Q 048657 298 LALSNNNLEGHMFSRNFNLANLK---LLQLEGN-RFVGEIPQSLSKCSSLE-GLHLNNNSLSGRIPRWLGNLTWLQYIIM 372 (456)
Q Consensus 298 L~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l 372 (456)
|++++|.+.+.. . +..+++|+ .|++++| .+....+..|..+++|+ +|++++|.++...+..+.. ++|++|++
T Consensus 110 L~l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred EeCCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 777777666532 2 55566666 7777777 66644445566777777 7777777766332333333 67777777
Q ss_pred CCCc-ccccCchhccCC-CCCCeEeCcCCccCCCCCcccccccccEEEccCc
Q 048657 373 PNNH-LEGLIPVEFCQL-DSLQILDISDNNISGSLPACFHPLSIKQVHLSKN 422 (456)
Q Consensus 373 ~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~ 422 (456)
++|+ +++..+..|..+ ++|+.|++++|++++.+.. .+.+++.|+++++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 7774 665656666666 7777777777777654433 4556777777665
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=2.4e-19 Score=157.06 Aligned_cols=181 Identities=22% Similarity=0.256 Sum_probs=144.0
Q ss_pred cccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEE
Q 048657 220 QLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLA 299 (456)
Q Consensus 220 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~ 299 (456)
..+.++++++.+. .+|..+. +.++.|+++++.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEE
Confidence 4556777776665 5555443 57888888888887766777888888888888888887 55555455788888888
Q ss_pred ccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccc
Q 048657 300 LSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEG 379 (456)
Q Consensus 300 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 379 (456)
+++|.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 88888887777777788899999999998885555567888999999999998886666678889999999999999987
Q ss_pred cCchhccCCCCCCeEeCcCCccCCCC
Q 048657 380 LIPVEFCQLDSLQILDISDNNISGSL 405 (456)
Q Consensus 380 ~~~~~~~~~~~L~~L~l~~~~l~~~~ 405 (456)
..+..+..+++|+.|++++|++....
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 77778888899999999999887653
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=4.4e-21 Score=179.54 Aligned_cols=244 Identities=18% Similarity=0.175 Sum_probs=112.2
Q ss_pred CchHHhhcCCCccEEEecCcccccccchhh---hhccccceeeeecccCcCC---CCCcC-------ccCCccccEEeCC
Q 048657 161 TFPKFLYHQHDLEYVDLSHIKMNGEFPTWL---LENNTKLIQLSVVNDSLAG---PFRLP-------IHSHKQLRLLDIS 227 (456)
Q Consensus 161 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~---~~~~~-------l~~~~~L~~L~l~ 227 (456)
.+...+..+++|+.|++++|.+.+..+..+ +..+++|++|++++|.+.. .++.. +..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 455677788889999999988765544332 2345566666665543321 11111 1344455555555
Q ss_pred CCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhh---cCC---------Ccc
Q 048657 228 TNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLA---VGC---------VNL 295 (456)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~---~~~---------~~L 295 (456)
+|.+.+.... .++..+..+++|++|++++|.+.+..+..+. ..+ ++|
T Consensus 103 ~n~l~~~~~~---------------------~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L 161 (386)
T 2ca6_A 103 DNAFGPTAQE---------------------PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 161 (386)
T ss_dssp SCCCCTTTHH---------------------HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHH---------------------HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCC
Confidence 5544421100 2333444445555555555444311111111 011 445
Q ss_pred cEEEccCCcccccc-c---ccccccccccEEEccCcccccc-----ccccccCCCCCcEEEcCCCcCc----cccCcccc
Q 048657 296 ESLALSNNNLEGHM-F---SRNFNLANLKLLQLEGNRFVGE-----IPQSLSKCSSLEGLHLNNNSLS----GRIPRWLG 362 (456)
Q Consensus 296 ~~L~l~~~~~~~~~-~---~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~ 362 (456)
++|++++|+++... + ..+..+++|++|++++|.+... .+..+..+++|++|++++|.++ ..++..+.
T Consensus 162 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~ 241 (386)
T 2ca6_A 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241 (386)
T ss_dssp CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGG
T ss_pred cEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHc
Confidence 55555555444211 1 1233444555555555554311 1114444555555555555543 23444445
Q ss_pred CCCCCcEEEcCCCccccc----CchhccC--CCCCCeEeCcCCccCC----CCCccc-c-cccccEEEccCcccC
Q 048657 363 NLTWLQYIIMPNNHLEGL----IPVEFCQ--LDSLQILDISDNNISG----SLPACF-H-PLSIKQVHLSKNMLH 425 (456)
Q Consensus 363 ~~~~L~~L~l~~~~~~~~----~~~~~~~--~~~L~~L~l~~~~l~~----~~~~~~-~-~~~L~~l~l~~~~~~ 425 (456)
.+++|+.|++++|.+++. ++..+.. +++|+.|++++|.++. ..+..+ . +++|++|++++|.+.
T Consensus 242 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp GCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred cCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 555555555555555432 2233322 4555555555555544 122221 1 345555555555554
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.2e-19 Score=154.24 Aligned_cols=158 Identities=24% Similarity=0.222 Sum_probs=86.9
Q ss_pred CCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEE
Q 048657 267 MKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGL 346 (456)
Q Consensus 267 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 346 (456)
.+++++|+++++.+. .++...+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 345666666666655 4444434455666666666666555444444555666666666665553333445555666666
Q ss_pred EcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCC
Q 048657 347 HLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHG 426 (456)
Q Consensus 347 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~ 426 (456)
++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+. ++.+++|++..|.+.+
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSG 179 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC------TTTTHHHHHHHHHCTT
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC------CCCHHHHHHHHHhCCc
Confidence 6666655544444455556666666666655554444455555666666666554432 2345555555555555
Q ss_pred CCCcc
Q 048657 427 QLKRG 431 (456)
Q Consensus 427 ~~~~~ 431 (456)
.+|..
T Consensus 180 ~ip~~ 184 (208)
T 2o6s_A 180 VVRNS 184 (208)
T ss_dssp TBBCT
T ss_pred eeecc
Confidence 55544
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=7.5e-19 Score=158.62 Aligned_cols=195 Identities=20% Similarity=0.281 Sum_probs=127.5
Q ss_pred ccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcE
Q 048657 193 NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI 272 (456)
Q Consensus 193 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~ 272 (456)
.+++|++|++.++.+.... .+..+++|+.|++++|.+. .++. ...+++|+.|++++|.+.+. ..+..+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 3445555555555444321 3555666777777766665 3333 23366777777777766542 35667777777
Q ss_pred EeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCc
Q 048657 273 LDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNS 352 (456)
Q Consensus 273 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 352 (456)
|++++|.+. .++. +..+++|++|++++|.+.+... +..+++|+.|++++|.+.+ .+. +..+++|+.|++++|.
T Consensus 112 L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 112 LDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSC
T ss_pred EECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCc
Confidence 777777776 4443 3467777777777777765433 5667778888888887763 332 6777888888888887
Q ss_pred CccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCC
Q 048657 353 LSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSL 405 (456)
Q Consensus 353 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 405 (456)
+++..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|++++.+
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence 764332 677788888888888877554 3677788888888888776543
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.81 E-value=1.2e-20 Score=174.77 Aligned_cols=246 Identities=19% Similarity=0.203 Sum_probs=179.8
Q ss_pred CCCchHHhhcCCCccEEEecCcccccccchh---hhhccc-cceeeeecccCcCCCCCcCccCC-----ccccEEeCCCC
Q 048657 159 GVTFPKFLYHQHDLEYVDLSHIKMNGEFPTW---LLENNT-KLIQLSVVNDSLAGPFRLPIHSH-----KQLRLLDISTN 229 (456)
Q Consensus 159 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~ 229 (456)
.+.++..+...++|+.|++++|.+.+..+.. .+..++ +|++|++++|.+.......+..+ ++|++|++++|
T Consensus 11 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 11 SNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp CCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred hHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC
Confidence 3345666666777999999999987665522 235566 89999999999887655555443 89999999999
Q ss_pred ccCCCCchhhhcc---C-CcceEEEccCCccCCCccccc----cC-CCCCcEEeccCCcCCCcccchh---hcCCC-ccc
Q 048657 230 NFRGHIPVEIGDV---L-PSLYVFNNSMNALDGSIPSSF----GN-MKFLQILDLSNNHLTGEIPEHL---AVGCV-NLE 296 (456)
Q Consensus 230 ~~~~~~~~~~~~~---~-~~L~~l~l~~~~~~~~~~~~l----~~-~~~L~~L~l~~~~l~~~~~~~~---~~~~~-~L~ 296 (456)
.+.+..+..+... + ++|+.|+++.|.+.+..+..+ .. .++|++|++++|.+.+.....+ ....+ +|+
T Consensus 91 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 91 FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 9886555544432 3 799999999999876554443 33 4699999999998874433322 12344 899
Q ss_pred EEEccCCccccccccccc----cc-ccccEEEccCcccccc----ccccccC-CCCCcEEEcCCCcCccccC----cccc
Q 048657 297 SLALSNNNLEGHMFSRNF----NL-ANLKLLQLEGNRFVGE----IPQSLSK-CSSLEGLHLNNNSLSGRIP----RWLG 362 (456)
Q Consensus 297 ~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~----~~~~~~~-l~~L~~L~l~~~~~~~~~~----~~~~ 362 (456)
+|++++|.+++.....+. .+ ++|++|++++|.+.+. ++..+.. .++|++|++++|.+++..+ ..+.
T Consensus 171 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~ 250 (362)
T 3goz_A 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD 250 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT
T ss_pred EeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHh
Confidence 999999998866554333 34 5999999999998753 3445555 4699999999999886544 4456
Q ss_pred CCCCCcEEEcCCCccccc-------CchhccCCCCCCeEeCcCCccCCC
Q 048657 363 NLTWLQYIIMPNNHLEGL-------IPVEFCQLDSLQILDISDNNISGS 404 (456)
Q Consensus 363 ~~~~L~~L~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~~~l~~~ 404 (456)
.+++|++|++++|.+.+. .+..+..+++|+.|++++|++...
T Consensus 251 ~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 251 SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 789999999999985433 234566788899999999998755
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.6e-18 Score=147.21 Aligned_cols=155 Identities=23% Similarity=0.259 Sum_probs=76.3
Q ss_pred CcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEc
Q 048657 293 VNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIM 372 (456)
Q Consensus 293 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 372 (456)
+++++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 34555555555554444444444555555555555554333333445555555555555554333334455555555555
Q ss_pred CCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCC
Q 048657 373 PNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNG 451 (456)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 451 (456)
++|.+++..+..+..+++|+.|++++|.+++.++..+. .++|++|++++|.+. ..+++|+.|+++.|.++|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHHHHHHHHCTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHHHHHHHhCCc
Confidence 55555544444445555555555555555544433322 445555555555442 234455555555555555
Q ss_pred CCCC
Q 048657 452 SIPD 455 (456)
Q Consensus 452 ~~p~ 455 (456)
.+|+
T Consensus 180 ~ip~ 183 (208)
T 2o6s_A 180 VVRN 183 (208)
T ss_dssp TBBC
T ss_pred eeec
Confidence 5553
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=4.7e-18 Score=156.46 Aligned_cols=225 Identities=16% Similarity=0.121 Sum_probs=169.0
Q ss_pred cEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccE-EEc
Q 048657 222 RLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLES-LAL 300 (456)
Q Consensus 222 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~-L~l 300 (456)
++++-+++.++ .+|..+ .++++.|++++|.+....+.+|.++++|++|++++|.+.+.++...+..++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45677777777 777655 3689999999999885555678999999999999998875677777777888765 556
Q ss_pred cCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCC-CcCccccCccccCC-CCCcEEEcCCCccc
Q 048657 301 SNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNN-NSLSGRIPRWLGNL-TWLQYIIMPNNHLE 378 (456)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~ 378 (456)
.+|++....+..+..+++|+.|++++|.+....+..+.....+..+++.+ +.+....+..|..+ ..++.|++++|.++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 67888887778888899999999999999866666666777888898866 45654445566665 46889999999998
Q ss_pred ccCchhccCCCCCCeEeCcC-CccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCCC
Q 048657 379 GLIPVEFCQLDSLQILDISD-NNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIPD 455 (456)
Q Consensus 379 ~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p~ 455 (456)
.+.+..+ ..++|+++++.+ |.++..+...+. .++|++|++++|.+. .+|...| .+|+.|.+.++.-..++|.
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~---~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGL---ENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSC---TTCCEEECTTCTTCCCCCC
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhhh---ccchHhhhccCCCcCcCCC
Confidence 6655554 456899999975 667766555544 789999999999985 6777644 4566666666654556663
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=8.6e-18 Score=150.26 Aligned_cols=169 Identities=27% Similarity=0.281 Sum_probs=124.4
Q ss_pred CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657 243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL 322 (456)
Q Consensus 243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 322 (456)
+++++.++++.+.+... ..+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+. ..+..+++|+.|
T Consensus 45 l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred cCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 66888888888877643 34677888888888888877 4444 44678888888888887663 236677888888
Q ss_pred EccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657 323 QLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 323 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 402 (456)
++++|.+.+ . ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 118 ~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 888888764 2 4577788888888888887643 567778888888888888876544 777888888888888877
Q ss_pred CCCCcccccccccEEEccCcccC
Q 048657 403 GSLPACFHPLSIKQVHLSKNMLH 425 (456)
Q Consensus 403 ~~~~~~~~~~~L~~l~l~~~~~~ 425 (456)
+. +....+++|+.|++++|.+.
T Consensus 192 ~l-~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 DL-RALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp BC-GGGTTCTTCSEEEEEEEEEE
T ss_pred CC-hhhccCCCCCEEECcCCccc
Confidence 54 33444677888888888775
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=2e-17 Score=160.02 Aligned_cols=161 Identities=24% Similarity=0.286 Sum_probs=71.5
Q ss_pred CCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEE
Q 048657 268 KFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLH 347 (456)
Q Consensus 268 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 347 (456)
++|+.|++++|.+. .+| ..+++|++|++++|.++... . +.. +|+.|++++|.+++ +|. .+++|+.|+
T Consensus 80 ~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip-~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLP-E-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYIN 146 (571)
T ss_dssp TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCC-C-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcc-h-hhc--CCCEEECCCCcCCC-CCC---cCccccEEe
Confidence 33444444444443 333 12344444444444444311 1 211 45555555555442 322 344555555
Q ss_pred cCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccc-------cEEEcc
Q 048657 348 LNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSI-------KQVHLS 420 (456)
Q Consensus 348 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L-------~~l~l~ 420 (456)
+++|.+++ +|. .+++|+.|++++|.+++. |. +. ++|+.|++++|.++..+. +.. +| +.|+++
T Consensus 147 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~l-p~-l~--~~L~~L~Ls~N~L~~lp~--~~~-~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 147 ADNNQLTM-LPE---LPTSLEVLSVRNNQLTFL-PE-LP--ESLEALDVSTNLLESLPA--VPV-RNHHSEETEIFFRCR 215 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC-CC--TTCCEEECCSSCCSSCCC--CC---------CCEEEECC
T ss_pred CCCCccCc-CCC---cCCCcCEEECCCCCCCCc-ch-hh--CCCCEEECcCCCCCchhh--HHH-hhhcccccceEEecC
Confidence 55555542 332 344555555555555442 22 32 455555555555553322 111 44 555555
Q ss_pred CcccCCCCCcccccCCCcceEEEccCcccCCCCC
Q 048657 421 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 454 (456)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p 454 (456)
+|.+. .+|... ..+++|+.|++++|++++.+|
T Consensus 216 ~N~l~-~lp~~l-~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 216 ENRIT-HIPENI-LSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp SSCCC-CCCGGG-GGSCTTEEEECCSSSCCHHHH
T ss_pred CCcce-ecCHHH-hcCCCCCEEEeeCCcCCCcCH
Confidence 55553 444442 225555555555555554433
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=2.3e-17 Score=151.84 Aligned_cols=201 Identities=20% Similarity=0.183 Sum_probs=91.6
Q ss_pred cEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceE-EEc
Q 048657 173 EYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYV-FNN 251 (456)
Q Consensus 173 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~-l~l 251 (456)
+.++.+++.++ .+|..+ .+++++|++++|.+.......|+.+++|++|++++|.+.+.++...+..++++.. +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 34555555544 344322 2356666666666655544555666666666666665543444444433444433 333
Q ss_pred cCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccC-Cccccccccccccc-ccccEEEccCccc
Q 048657 252 SMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSN-NNLEGHMFSRNFNL-ANLKLLQLEGNRF 329 (456)
Q Consensus 252 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~ 329 (456)
..+.+....+..+..+++|++|++++|.+. .++...+....++..+++.+ +.+.......+... ..++.|++++|.+
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 344444434445555555556655555554 33333222334444454433 23333222233222 2344445555544
Q ss_pred cccccccccCCCCCcEEEcCC-CcCccccCccccCCCCCcEEEcCCCcccc
Q 048657 330 VGEIPQSLSKCSSLEGLHLNN-NSLSGRIPRWLGNLTWLQYIIMPNNHLEG 379 (456)
Q Consensus 330 ~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 379 (456)
+ .++.......+|+++++.+ |.++...++.|..+++|++|++++|+++.
T Consensus 167 ~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~ 216 (350)
T 4ay9_X 167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS 216 (350)
T ss_dssp C-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC
T ss_pred c-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc
Confidence 4 2222222334444444443 23332222334444444444444444443
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=1.6e-17 Score=139.67 Aligned_cols=154 Identities=18% Similarity=0.149 Sum_probs=104.3
Q ss_pred CCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEE
Q 048657 291 GCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYI 370 (456)
Q Consensus 291 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 370 (456)
.+++|+++++++|.+.... .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3455666666666555322 3455666777777776553 22356677778888888887776667777778888888
Q ss_pred EcCCCcccccCchhccCCCCCCeEeCcCCc-cCCCCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCccc
Q 048657 371 IMPNNHLEGLIPVEFCQLDSLQILDISDNN-ISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449 (456)
Q Consensus 371 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 449 (456)
++++|.+++..+..+..+++|+.|++++|+ ++.. +....+++|++|++++|.+.+ ++ .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~~l~~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-GGGGGCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-HhhcCCCCCCEEECCCCCCcC-hH--HhccCCCCCEEEeeCccc
Confidence 888888876667777788888888888887 5543 344446788888888888753 44 377888999999999888
Q ss_pred CCC
Q 048657 450 NGS 452 (456)
Q Consensus 450 ~~~ 452 (456)
.+.
T Consensus 194 ~~~ 196 (197)
T 4ezg_A 194 GGK 196 (197)
T ss_dssp ---
T ss_pred CCc
Confidence 753
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.1e-17 Score=154.73 Aligned_cols=154 Identities=25% Similarity=0.199 Sum_probs=76.0
Q ss_pred ccEEEccCCccccccccccc-ccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcC
Q 048657 295 LESLALSNNNLEGHMFSRNF-NLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMP 373 (456)
Q Consensus 295 L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 373 (456)
++.|++++|.+++.....+. .+++|+.|++++|.+....+..|..+++|++|++++|.++...+..|..+++|+.|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44455555544444433333 44555555555555543333445555555555555555544444445555555555555
Q ss_pred CCcccccCchhccCCCCCCeEeCcCCccCCCCCccc----ccccccEEEccCcccCCCCCcccccCCCc--ceEEEccCc
Q 048657 374 NNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACF----HPLSIKQVHLSKNMLHGQLKRGTFFNCSS--LVTLDLSYN 447 (456)
Q Consensus 374 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~----~~~~L~~l~l~~~~~~~~~~~~~~~~~~~--L~~L~l~~~ 447 (456)
+|.+....+..|..+++|+.|++++|.+++.+...+ .+++|+.|++++|.+. .++...|..+++ ++.|++++|
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSS
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCC
Confidence 555554444555555555555555555554443332 1445555555555553 344433444444 245555555
Q ss_pred cc
Q 048657 448 RL 449 (456)
Q Consensus 448 ~l 449 (456)
++
T Consensus 200 ~~ 201 (361)
T 2xot_A 200 PL 201 (361)
T ss_dssp CE
T ss_pred Cc
Confidence 54
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=5.5e-17 Score=138.67 Aligned_cols=151 Identities=23% Similarity=0.312 Sum_probs=109.7
Q ss_pred cEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCC
Q 048657 271 QILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNN 350 (456)
Q Consensus 271 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 350 (456)
+.++++++.+. .+|..+ .++++.|++++|.+.......+..+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 56777777776 666543 35778888888877766666677777788888888877766677777778888888888
Q ss_pred CcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccC
Q 048657 351 NSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLH 425 (456)
Q Consensus 351 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~ 425 (456)
|.++...+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..+..+. .++|+.+++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 877755555567777788888888877777677777777777788877777766655444 567777777777663
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=8.7e-17 Score=138.42 Aligned_cols=151 Identities=21% Similarity=0.187 Sum_probs=84.4
Q ss_pred CcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcC
Q 048657 270 LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLN 349 (456)
Q Consensus 270 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 349 (456)
.+.++++++.+. .+|..+ .++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 345666666655 555432 2556666666666665555555556666666666666653333445556666666666
Q ss_pred CCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccC
Q 048657 350 NNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLH 425 (456)
Q Consensus 350 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~ 425 (456)
+|.++...+..|..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++.++..+. .++|+.|++++|.+.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 66665444444555666666666666655 3344555556666666666665554443332 445555555555554
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=8.4e-17 Score=137.51 Aligned_cols=152 Identities=22% Similarity=0.312 Sum_probs=102.1
Q ss_pred cEEeccCCcCCCcccchhhcCCCcccEEEccCCccccccc-ccccccccccEEEccCccccccccccccCCCCCcEEEcC
Q 048657 271 QILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMF-SRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLN 349 (456)
Q Consensus 271 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 349 (456)
+.++++++.+. .+|..+ .+.+++|++++|.+....+ ..+..+++|+.|++++|.+++..+..|..+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 47788877776 566533 3456777777777766532 345667777777777777765555567777777777777
Q ss_pred CCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCC
Q 048657 350 NNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHG 426 (456)
Q Consensus 350 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~ 426 (456)
+|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+. .++|++|++++|.+..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 7777655566677777777777777777766666677777777777777777666554444 5566777777666643
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=9e-17 Score=143.63 Aligned_cols=148 Identities=27% Similarity=0.395 Sum_probs=71.6
Q ss_pred CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657 243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL 322 (456)
Q Consensus 243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 322 (456)
+++|+.|++++|.+.+..+ +..+++|++|++++|.+. .++. ...+++|++|++++|.+.+. ..+..+++|+.|
T Consensus 67 l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L 139 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL 139 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEE
T ss_pred CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEE
Confidence 4444444444444443222 444555555555555444 2222 22445555555555554432 233445555555
Q ss_pred EccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657 323 QLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 323 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 402 (456)
++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++. ..+..+++|+.|++++|+++
T Consensus 140 ~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEE
T ss_pred EccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCccc
Confidence 5555555422 344555555555555555543322 55555555555555555432 22455555555555555554
Q ss_pred C
Q 048657 403 G 403 (456)
Q Consensus 403 ~ 403 (456)
.
T Consensus 214 ~ 214 (291)
T 1h6t_A 214 N 214 (291)
T ss_dssp C
T ss_pred C
Confidence 3
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=9.6e-17 Score=137.17 Aligned_cols=153 Identities=21% Similarity=0.234 Sum_probs=131.5
Q ss_pred eEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccC
Q 048657 247 YVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEG 326 (456)
Q Consensus 247 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 326 (456)
+.++++++.+. .+|..+ .++++.|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l--~~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL--PETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC--CTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc--CcCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 56778877776 455544 378999999999998 66665566789999999999999988788888999999999999
Q ss_pred ccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCC
Q 048657 327 NRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISG 403 (456)
Q Consensus 327 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 403 (456)
|.++...+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99985555667889999999999999998888899999999999999999998888889999999999999998864
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=1.2e-16 Score=136.66 Aligned_cols=134 Identities=19% Similarity=0.175 Sum_probs=85.2
Q ss_pred CcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcC
Q 048657 270 LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLN 349 (456)
Q Consensus 270 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 349 (456)
+++|++++|.+.+..+...+..+++|++|++++|.+.......+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 45555555555422233333455666666666666655555556666667777777776665555556667777777777
Q ss_pred CCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCC
Q 048657 350 NNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISG 403 (456)
Q Consensus 350 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 403 (456)
+|.+++..+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|++..
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 777766666667777777777777777766666667777777777777776654
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=9.8e-17 Score=157.05 Aligned_cols=189 Identities=24% Similarity=0.258 Sum_probs=145.5
Q ss_pred ccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEc
Q 048657 221 LRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLAL 300 (456)
Q Consensus 221 L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l 300 (456)
+..+.+....+.+..+. ..+++|+.|+++.+.+.. ++ .+..+++|+.|++++|.+. .++. +..+++|+.|++
T Consensus 23 l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEEC
T ss_pred HHHHhccCCCcccccch---hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEEC
Confidence 33444555444432222 236789999999888764 33 5788999999999999887 4444 457899999999
Q ss_pred cCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCccccc
Q 048657 301 SNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGL 380 (456)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 380 (456)
++|.+.+. ..+..+++|+.|++++|.+.+ + ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+.
T Consensus 95 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKDL--SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCCC--TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCCC--hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 99988763 357788999999999999874 3 4578889999999999988754 6788899999999999998866
Q ss_pred CchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcccCC
Q 048657 381 IPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNMLHG 426 (456)
Q Consensus 381 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~ 426 (456)
.+ +..+++|+.|+|++|.+.+. +....+++|+.|++++|.+.+
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEEC
T ss_pred hh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcC
Confidence 55 88889999999999988865 444457889999999998863
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=6.6e-17 Score=158.25 Aligned_cols=194 Identities=22% Similarity=0.330 Sum_probs=156.9
Q ss_pred cceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEec
Q 048657 196 KLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDL 275 (456)
Q Consensus 196 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l 275 (456)
.+..+.+....+... ..+..+++|+.|+++++.+. .++ .+ ..+++|+.|+++.|.+.+..+ +..+++|+.|++
T Consensus 22 ~l~~l~l~~~~i~~~--~~~~~L~~L~~L~l~~n~i~-~l~-~l-~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQ-GI-QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSE--ECHHHHTTCCCCBCTTCCCC-CCT-TG-GGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccc--cchhcCCCCCEEECcCCCCC-CCh-HH-ccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 344444444444432 23567789999999999987 444 23 348999999999999886544 889999999999
Q ss_pred cCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCcc
Q 048657 276 SNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSG 355 (456)
Q Consensus 276 ~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 355 (456)
++|.+. .++. +..+++|++|++++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|++++|.+.+
T Consensus 95 s~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 95 DENKIK-DLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CSSCCC-CCTT--STTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred cCCCCC-CChh--hccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 999987 5542 45789999999999998864 4577899999999999999854 678899999999999999986
Q ss_pred ccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCc
Q 048657 356 RIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPA 407 (456)
Q Consensus 356 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 407 (456)
..+ +..+++|+.|+|++|.+.+. ..+..+++|+.|++++|++...+..
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCC
T ss_pred chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccc
Confidence 555 89999999999999999865 4688999999999999999875443
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=6.5e-17 Score=135.88 Aligned_cols=152 Identities=18% Similarity=0.195 Sum_probs=90.5
Q ss_pred cCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCc
Q 048657 265 GNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLE 344 (456)
Q Consensus 265 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 344 (456)
..+++|+.|+++++.+. .++. ...+++|++|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLTG--IEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCTT--GGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChHH--HhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34455566666666555 4442 23456666666666644432 2445566666666666666654555666667777
Q ss_pred EEEcCCCcCccccCccccCCCCCcEEEcCCCc-ccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcc
Q 048657 345 GLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNH-LEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNM 423 (456)
Q Consensus 345 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~ 423 (456)
+|++++|.+++..+..+..+++|++|++++|. ++.. + .+..+++|+.|++++|++++.. ....+++|+.|++++|+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 77777776665556666667777777777776 4432 2 4666677777777777766533 33345667777777776
Q ss_pred c
Q 048657 424 L 424 (456)
Q Consensus 424 ~ 424 (456)
+
T Consensus 193 i 193 (197)
T 4ezg_A 193 I 193 (197)
T ss_dssp -
T ss_pred c
Confidence 5
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=1.1e-16 Score=147.82 Aligned_cols=176 Identities=23% Similarity=0.213 Sum_probs=117.2
Q ss_pred cEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCcccccc-CCCCCcEEeccCCcCCCcccchhhcCCCcccEEEc
Q 048657 222 RLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFG-NMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLAL 300 (456)
Q Consensus 222 ~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l 300 (456)
+.++.+++.+. .+|..+. +.++.|++++|.+.+..+..+. .+++|+.|++++|.+. .++...+..+++|++|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence 35566666655 4554432 3567777777776655555555 6777777777777776 555444456777777777
Q ss_pred cCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccc---cCCCCCcEEEcCCCcc
Q 048657 301 SNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWL---GNLTWLQYIIMPNNHL 377 (456)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~ 377 (456)
++|.+.......+..+++|+.|++++|.+....+..|..+++|+.|++++|.++...+..+ ..+++|+.|++++|.+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 7777776666666677777777777777775556677777777777777777764333334 4577777888887777
Q ss_pred cccCchhccCCCC--CCeEeCcCCccC
Q 048657 378 EGLIPVEFCQLDS--LQILDISDNNIS 402 (456)
Q Consensus 378 ~~~~~~~~~~~~~--L~~L~l~~~~l~ 402 (456)
+...+..+..++. ++.|++++|++.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 7666666666665 367777777664
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=4.7e-16 Score=150.56 Aligned_cols=183 Identities=25% Similarity=0.354 Sum_probs=111.7
Q ss_pred ccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEe
Q 048657 195 TKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILD 274 (456)
Q Consensus 195 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~ 274 (456)
.+++.|+++++.+.. ++..+ +++|+.|++++|.+. .+| ..+++|+.|++++|.+.+ +|. +.. +|+.|+
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 367777777777665 33333 266777777777776 555 235677777777777664 444 433 677777
Q ss_pred ccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCc
Q 048657 275 LSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS 354 (456)
Q Consensus 275 l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 354 (456)
+++|.+. .++. .+++|++|++++|.++.... .+++|+.|++++|.+++ +|. +. ++|+.|++++|.++
T Consensus 127 Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 127 VDNNQLT-MLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CCSSCCS-CCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CCCCcCC-CCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 7777766 3544 35667777777776665322 35667777777777663 444 43 66777777777666
Q ss_pred cccCccccCCCCC-------cEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCc
Q 048657 355 GRIPRWLGNLTWL-------QYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPA 407 (456)
Q Consensus 355 ~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 407 (456)
.+|. +.. +| +.|++++|.++. +|..+..+++|+.|++++|++++..+.
T Consensus 194 -~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 194 -SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp -SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred -chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 4444 433 55 667777766663 344455566677777777666654443
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=7e-16 Score=132.72 Aligned_cols=135 Identities=24% Similarity=0.273 Sum_probs=86.4
Q ss_pred CCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEE
Q 048657 268 KFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLH 347 (456)
Q Consensus 268 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 347 (456)
++|+.|++++|.+. .++...+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+..+++|++|+
T Consensus 40 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccC-ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 44555555555554 33222233455555555555555544444455666667777777766644445566777777777
Q ss_pred cCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCC
Q 048657 348 LNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGS 404 (456)
Q Consensus 348 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 404 (456)
+++|.++ .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++...
T Consensus 119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 7777776 6666777777777777777777766666677777778888877777644
No 115
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.68 E-value=2e-15 Score=141.24 Aligned_cols=334 Identities=17% Similarity=0.173 Sum_probs=158.9
Q ss_pred CCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCCCCccEEEcCCceeeeccCC
Q 048657 32 SSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLTSIEELMLSNNHFQIPISL 111 (456)
Q Consensus 32 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 111 (456)
++.+...+|.+|.+|+++.+..+ ++.....+|.+|++|+.+++..+ ++ .++..++.++++|+.+.+..+-. ....
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~l~--~i~~ 133 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLMLK--SIGV 133 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTTCC--EECT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCcee--eecc
Confidence 34455555666666666666432 44344455666666666666543 33 45555555566555555443311 1122
Q ss_pred CcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCccEEEecCcccccccchhhh
Q 048657 112 EPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDLEYVDLSHIKMNGEFPTWLL 191 (456)
Q Consensus 112 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 191 (456)
..+..+...+......... --...+..+.+|+.+.+..+.. .+....+
T Consensus 134 ~aF~~~~~~~~~~~~~~~~------------------------------i~~~aF~~c~~L~~i~l~~~~~--~I~~~~F 181 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVTV------------------------------IGDEAFATCESLEYVSLPDSME--TLHNGLF 181 (394)
T ss_dssp TTTTTCCCSEEECCTTCCE------------------------------ECTTTTTTCTTCCEEECCTTCC--EECTTTT
T ss_pred eeeecccccccccCccccc------------------------------cchhhhcccCCCcEEecCCccc--eeccccc
Confidence 2222222111111100000 0012344566666666654321 3334445
Q ss_pred hccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCc
Q 048657 192 ENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQ 271 (456)
Q Consensus 192 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~ 271 (456)
.+|.+|+.+.+..+ +.......+..+..|+.+.+..+... +.........|+
T Consensus 182 ~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~---------------------------i~~~~~~~~~l~ 233 (394)
T 4fs7_A 182 SGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY---------------------------LGDFALSKTGVK 233 (394)
T ss_dssp TTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE---------------------------ECTTTTTTCCCC
T ss_pred cCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE---------------------------eehhhcccCCCc
Confidence 56666666665443 22222233444455554444332211 111122234455
Q ss_pred EEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCC
Q 048657 272 ILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNN 351 (456)
Q Consensus 272 ~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 351 (456)
.+.+... +. .+....+..+..++.+.+..+.. ......+..+..++.+......+ ....|..+.+|+.+.+.++
T Consensus 234 ~i~ip~~-~~-~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~ 307 (394)
T 4fs7_A 234 NIIIPDS-FT-ELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS 307 (394)
T ss_dssp EEEECTT-CC-EECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT
T ss_pred eEEECCC-ce-ecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee---ccccccccccccccccccc
Confidence 5554432 11 23333333455555555544321 22233344555555555444332 1234556666666666543
Q ss_pred cCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCc
Q 048657 352 SLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKR 430 (456)
Q Consensus 352 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~ 430 (456)
++.....+|.+|++|+.+++.++ ++.+...+|.+|++|+.+++..+ ++......+. +.+|+++++..+ + ..+.
T Consensus 308 -i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~-~~~~- 381 (394)
T 4fs7_A 308 -VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-L-EQYR- 381 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-G-GGGG-
T ss_pred -cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-C-EEhh-
Confidence 44344556666777777776543 44455566667777777777654 4444444444 566777777544 2 2333
Q ss_pred ccccCCCcceEE
Q 048657 431 GTFFNCSSLVTL 442 (456)
Q Consensus 431 ~~~~~~~~L~~L 442 (456)
..|.+|++|+.+
T Consensus 382 ~~F~~c~~L~~I 393 (394)
T 4fs7_A 382 YDFEDTTKFKWI 393 (394)
T ss_dssp GGBCTTCEEEEE
T ss_pred heecCCCCCcEE
Confidence 347778887765
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=1.4e-16 Score=140.10 Aligned_cols=169 Identities=21% Similarity=0.256 Sum_probs=125.3
Q ss_pred CCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEE
Q 048657 243 LPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLL 322 (456)
Q Consensus 243 ~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 322 (456)
+.++..+++..+.+.+ ++ .+..+++|+.|++++|.+. .++. ...+++|++|++++|.+.+... +..+++|+.|
T Consensus 18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLAG--MQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cchH--HhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 3456677777777663 33 5677888899999888887 5552 3467888888888888876554 6778888888
Q ss_pred EccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccC
Q 048657 323 QLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 323 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 402 (456)
++++|.+.+ .+. +.. ++|++|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|+++
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCc
Confidence 888888874 332 223 7888888888888743 3578888888888888888765 36777888888888888887
Q ss_pred CCCCcccccccccEEEccCcccCC
Q 048657 403 GSLPACFHPLSIKQVHLSKNMLHG 426 (456)
Q Consensus 403 ~~~~~~~~~~~L~~l~l~~~~~~~ 426 (456)
+. .....+++|+.|++++|.+.+
T Consensus 164 ~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 164 NT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp BC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred ch-HHhccCCCCCEEeCCCCcccC
Confidence 66 334446788888888888753
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=7.6e-17 Score=147.08 Aligned_cols=103 Identities=18% Similarity=0.092 Sum_probs=75.4
Q ss_pred CCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCc-EEEcCCCcCccccCccccCCCCCcEE
Q 048657 292 CVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLE-GLHLNNNSLSGRIPRWLGNLTWLQYI 370 (456)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L 370 (456)
+++|+++++.+|+++......|.++.+|+++++.++ +....+.+|.+|++|+ .+++.+ .++...+.+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 566777777776666666666777777777777776 5445566777788887 888877 5665666778888888888
Q ss_pred EcCCCcccccCchhccCCCCCCeEeC
Q 048657 371 IMPNNHLEGLIPVEFCQLDSLQILDI 396 (456)
Q Consensus 371 ~l~~~~~~~~~~~~~~~~~~L~~L~l 396 (456)
+++++.+..+...+|.++++|++++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 88888877777778888888887753
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=1.9e-16 Score=144.39 Aligned_cols=103 Identities=15% Similarity=0.132 Sum_probs=89.9
Q ss_pred CCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCC-eEeCcCCccCCCCCcccc-cccccE
Q 048657 339 KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQ-ILDISDNNISGSLPACFH-PLSIKQ 416 (456)
Q Consensus 339 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~-~~~L~~ 416 (456)
.|++|+.+++++|.++.....+|.+|++|+++++.++ +..+...+|..+++|+ .+++.+ .++......+. +.+|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 4899999999999998777788999999999999998 7778888999999999 999998 77767666665 789999
Q ss_pred EEccCcccCCCCCcccccCCCcceEEEc
Q 048657 417 VHLSKNMLHGQLKRGTFFNCSSLVTLDL 444 (456)
Q Consensus 417 l~l~~~~~~~~~~~~~~~~~~~L~~L~l 444 (456)
+++.+|.+. .++..+|.++++|+.|..
T Consensus 302 l~l~~n~i~-~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKIT-TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccC-ccchhhhcCCcchhhhcc
Confidence 999999995 788888999999999863
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=3.4e-16 Score=127.93 Aligned_cols=135 Identities=22% Similarity=0.184 Sum_probs=81.9
Q ss_pred ccccEEEccCcccc-ccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEe
Q 048657 317 ANLKLLQLEGNRFV-GEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILD 395 (456)
Q Consensus 317 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 395 (456)
++|+.|++++|.+. +.++..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555554 34444455566666666666665533 5556666666666666666654555555566666666
Q ss_pred CcCCccCCCC--CcccccccccEEEccCcccCCCCCc---ccccCCCcceEEEccCcccCCCCCC
Q 048657 396 ISDNNISGSL--PACFHPLSIKQVHLSKNMLHGQLKR---GTFFNCSSLVTLDLSYNRLNGSIPD 455 (456)
Q Consensus 396 l~~~~l~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~~~p~ 455 (456)
+++|.+++.. .....+++|+.|++++|.+. .++. ..+..+++|+.|++++|++. ++|+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 6666666543 22223566777777777664 3333 35777888888888888776 5554
No 120
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.64 E-value=1.3e-14 Score=135.70 Aligned_cols=311 Identities=13% Similarity=0.101 Sum_probs=165.6
Q ss_pred hHHhhcCCCccEEeccCCCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccccccCCCCCcCC
Q 048657 13 QIIGESMPSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSISSSPLVHL 92 (456)
Q Consensus 13 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l 92 (456)
.+|.+ |.+|+.+.+.. .++.+...+|.+|.+|+.+++.++ ++.....+|.++++|+.+.+..+ ++ .+...++..+
T Consensus 65 ~AF~~-c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~~~ 139 (394)
T 4fs7_A 65 AAFQG-CRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFKGC 139 (394)
T ss_dssp TTTTT-CTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTC
T ss_pred HHhhC-CCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeeecc
Confidence 45666 99999999974 488899899999999999999765 55566778999999999888765 33 4666677777
Q ss_pred CCccEEEcCCceeeeccCCCcccccccceEEeccCcccccccccCcCCCCCccccceeeccCCCCCCCCchHHhhcCCCc
Q 048657 93 TSIEELMLSNNHFQIPISLEPFFNHSRLKFFYAENNQINAEITQSHSLIPPKFQLSRLSLSSGYEDGVTFPKFLYHQHDL 172 (456)
Q Consensus 93 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~l~~~~~L 172 (456)
..++........ ......+..+.+|+.+.+.++... .. ...+..+.+|
T Consensus 140 ~~~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~~~-I~----------------------------~~~F~~c~~L 187 (394)
T 4fs7_A 140 DFKEITIPEGVT---VIGDEAFATCESLEYVSLPDSMET-LH----------------------------NGLFSGCGKL 187 (394)
T ss_dssp CCSEEECCTTCC---EECTTTTTTCTTCCEEECCTTCCE-EC----------------------------TTTTTTCTTC
T ss_pred cccccccCcccc---ccchhhhcccCCCcEEecCCccce-ec----------------------------cccccCCCCc
Confidence 655544433332 234556778888988888643211 10 1223345556
Q ss_pred cEEEecCcccccccchhhhhccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEcc
Q 048657 173 EYVDLSHIKMNGEFPTWLLENNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNS 252 (456)
Q Consensus 173 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~ 252 (456)
+.+.+..+ +. .+....+.++..|+.+.+...... ..........|+.+.+.... . .+....
T Consensus 188 ~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~------------- 248 (394)
T 4fs7_A 188 KSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSV------------- 248 (394)
T ss_dssp CBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSST-------------
T ss_pred eEEEcCCC-ce-EeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc-e-eccccc-------------
Confidence 66665443 11 333444566677776665543221 11112223455555554321 1 111222
Q ss_pred CCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcccccc
Q 048657 253 MNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGE 332 (456)
Q Consensus 253 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 332 (456)
+..+..++.+.+..+.. .+....+..+..++.+......+. ...+..+.+|+.+.+.++ +...
T Consensus 249 -----------f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I 311 (394)
T 4fs7_A 249 -----------FYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFI 311 (394)
T ss_dssp -----------TTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEE
T ss_pred -----------ccccccceeEEcCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-ccee
Confidence 23333344444433211 222222233444444443332221 122334445555554432 2222
Q ss_pred ccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcC
Q 048657 333 IPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISD 398 (456)
Q Consensus 333 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 398 (456)
...+|.+|++|+.+++.++ ++.....+|.+|++|+.+++..+ ++.+...+|.+|++|+++++..
T Consensus 312 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred chhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 3344555555555555432 33344455555555555555544 3334445555555666555544
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=6.3e-16 Score=135.89 Aligned_cols=173 Identities=19% Similarity=0.234 Sum_probs=142.8
Q ss_pred CCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCccc
Q 048657 217 SHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLE 296 (456)
Q Consensus 217 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~ 296 (456)
.+.++..++++++.+. .++ .+ ..+++|+.++++++.+.. ++ .+..+++|++|++++|.+. .++. +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~-~~~-~~-~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVT-DLV-SQ-KELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTT-SEE-CH-HHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCC
T ss_pred HHHHHHHHHhcCCCcc-ccc-ch-hhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCC
Confidence 4567778888888877 334 23 347899999999998874 44 6889999999999999998 5555 55799999
Q ss_pred EEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCc
Q 048657 297 SLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNH 376 (456)
Q Consensus 297 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 376 (456)
+|++++|++.+... +.. ++|+.|++++|.+.+ . ..+..+++|++|++++|.+++. + .+..+++|+.|++++|.
T Consensus 89 ~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 89 ELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp EEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSC
T ss_pred EEECCCCccCCcCc--ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCc
Confidence 99999999987443 223 899999999999984 3 3688999999999999999854 3 68899999999999999
Q ss_pred ccccCchhccCCCCCCeEeCcCCccCCCCC
Q 048657 377 LEGLIPVEFCQLDSLQILDISDNNISGSLP 406 (456)
Q Consensus 377 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 406 (456)
+.+. ..+..+++|+.|++++|+++..+.
T Consensus 162 i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 162 ITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp CCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred Ccch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 9866 678899999999999999986643
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=2.7e-15 Score=125.27 Aligned_cols=132 Identities=23% Similarity=0.334 Sum_probs=100.4
Q ss_pred cEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccc-cccccccccEEEccCccccccccccccCCCCCcEEEcC
Q 048657 271 QILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFS-RNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLN 349 (456)
Q Consensus 271 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 349 (456)
+.++++++.+. .+|..+. .++++|++++|.+...... .+..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 56777777775 6665432 3777888888777665543 36677888888888888876667778888888888888
Q ss_pred CCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCC
Q 048657 350 NNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLP 406 (456)
Q Consensus 350 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 406 (456)
+|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 888887777778888888888888888887777788888888888888888875433
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=3.8e-17 Score=159.02 Aligned_cols=122 Identities=20% Similarity=0.198 Sum_probs=91.6
Q ss_pred cccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCc
Q 048657 318 NLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDIS 397 (456)
Q Consensus 318 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 397 (456)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++. | .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECC
Confidence 57888888888874 554 778888888888888887 7777888888888888888888763 4 77888888888888
Q ss_pred CCccCCCC-Cccc-ccccccEEEccCcccCCCCCcc--cccCCCcceEEEc
Q 048657 398 DNNISGSL-PACF-HPLSIKQVHLSKNMLHGQLKRG--TFFNCSSLVTLDL 444 (456)
Q Consensus 398 ~~~l~~~~-~~~~-~~~~L~~l~l~~~~~~~~~~~~--~~~~~~~L~~L~l 444 (456)
+|.+++.. +..+ .+++|+.|++++|.+.+..+.. .+..+|+|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 88888774 4443 4778888888888886544322 2445788888864
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=8.9e-15 Score=122.10 Aligned_cols=131 Identities=20% Similarity=0.252 Sum_probs=89.2
Q ss_pred cEEEccCCcccccccccccccccccEEEccCccccccccc-cccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCC
Q 048657 296 ESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQ-SLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374 (456)
Q Consensus 296 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 374 (456)
++++++++++..... .+ ..++++|++++|.+.+..+. .+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPR-DI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCS-CC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCcc-CC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 667777777754332 22 23677777777777644332 367777777777777777766677777777777777777
Q ss_pred CcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCC
Q 048657 375 NHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLK 429 (456)
Q Consensus 375 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~ 429 (456)
|.+++..+..|..+++|+.|++++|++++..+..+. .++|++|++++|.+.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 777776666677777777777777777766555544 5677777777777654433
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=3.2e-15 Score=119.44 Aligned_cols=128 Identities=22% Similarity=0.177 Sum_probs=87.9
Q ss_pred cccccEEEccCcccc-ccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeE
Q 048657 316 LANLKLLQLEGNRFV-GEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQIL 394 (456)
Q Consensus 316 ~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 394 (456)
.++|+.|++++|.+. +..+..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|+.|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 456777777777765 45566666777777777777777644 566777777777777777776566666667777777
Q ss_pred eCcCCccCCCC--CcccccccccEEEccCcccCCCCCc---ccccCCCcceEEEccC
Q 048657 395 DISDNNISGSL--PACFHPLSIKQVHLSKNMLHGQLKR---GTFFNCSSLVTLDLSY 446 (456)
Q Consensus 395 ~l~~~~l~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~ 446 (456)
++++|.+++.. .....+++|++|++++|.+.+ ++. ..+..+++|+.|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcccccCCC
Confidence 77777777643 223336677788888777753 343 4577788888888764
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=8.9e-15 Score=119.47 Aligned_cols=133 Identities=29% Similarity=0.253 Sum_probs=77.8
Q ss_pred CCCcEEeccCCcCC-CcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEE
Q 048657 268 KFLQILDLSNNHLT-GEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGL 346 (456)
Q Consensus 268 ~~L~~L~l~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 346 (456)
+++++|++++|.+. +.++.. +..+++|++|++++|.+... ..+..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 55666666666554 333333 23455666666666665543 445556666666666666654455555556666666
Q ss_pred EcCCCcCccc-cCccccCCCCCcEEEcCCCcccccCc---hhccCCCCCCeEeCcCCccCC
Q 048657 347 HLNNNSLSGR-IPRWLGNLTWLQYIIMPNNHLEGLIP---VEFCQLDSLQILDISDNNISG 403 (456)
Q Consensus 347 ~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~ 403 (456)
++++|.+++. .+..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 6666666532 12556666666666666666665444 356666666666666666553
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=2.3e-14 Score=118.12 Aligned_cols=110 Identities=25% Similarity=0.300 Sum_probs=50.7
Q ss_pred CCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEcc
Q 048657 342 SLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLS 420 (456)
Q Consensus 342 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~ 420 (456)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++.++..+. .++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 444444444444433333344444444444444444444334444444455555555544444333322 3445555555
Q ss_pred CcccCCCCCcccccCCCcceEEEccCcccCCC
Q 048657 421 KNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGS 452 (456)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 452 (456)
+|.+. .++...|..+++|+.|++++|++++.
T Consensus 109 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 109 TNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCS-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcce-EeCHHHhcCCcccCEEEecCCCeecc
Confidence 55443 34444344455555555555555443
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.57 E-value=1.6e-13 Score=127.77 Aligned_cols=197 Identities=13% Similarity=0.119 Sum_probs=96.4
Q ss_pred cCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccE
Q 048657 242 VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKL 321 (456)
Q Consensus 242 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 321 (456)
.+++|+.+++..+.+...-..++. +..|+.+.+.++ +. .++...+..+++|+.+.+..+ +.......|.+ .+|+.
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred CcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence 344455555544444322222222 345555555432 33 444444445555555555442 23333333333 45555
Q ss_pred EEccCccccccccccccCCCCCcEEEcCCCcCc-----cccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeC
Q 048657 322 LQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLS-----GRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDI 396 (456)
Q Consensus 322 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 396 (456)
+.+.. .+......+|.+|++|+.+.+.++.+. .....+|.+|++|+.+++.+ .+..+...+|..|++|+.+.+
T Consensus 253 i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 253 VKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEE
T ss_pred EEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEE
Confidence 55532 233233445555666666665554432 23445566666666666663 344455556666666666666
Q ss_pred cCCccCCCCCcccccccccEEEccCcccCCCCCcccccCCC-cceEEEccCc
Q 048657 397 SDNNISGSLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCS-SLVTLDLSYN 447 (456)
Q Consensus 397 ~~~~l~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~ 447 (456)
..+ ++......+...+|+.+++.+|... .++...|.+++ +++.|.+-.+
T Consensus 331 p~~-l~~I~~~aF~~~~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 331 PAN-VTQINFSAFNNTGIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CTT-CCEECTTSSSSSCCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGG
T ss_pred Ccc-ccEEcHHhCCCCCCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHH
Confidence 443 4444444444226666666666553 45555566553 4566665544
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=1.4e-13 Score=128.12 Aligned_cols=242 Identities=13% Similarity=0.091 Sum_probs=182.4
Q ss_pred ccccceeeeecccCcCCCCCcCccCCccccEEeCCCCccCCCCchhhhccCCcceEEEccCCccCCCccccccCCCCCcE
Q 048657 193 NNTKLIQLSVVNDSLAGPFRLPIHSHKQLRLLDISTNNFRGHIPVEIGDVLPSLYVFNNSMNALDGSIPSSFGNMKFLQI 272 (456)
Q Consensus 193 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~ 272 (456)
.+..++.+.+.+. +.......|..+ +|+.+.+..+ +. .++...+.. .+|+.+.+.. .+...-..+|..|++|+.
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3455555655442 233333445554 6788887654 33 344444443 4688888875 444444567899999999
Q ss_pred EeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCc
Q 048657 273 LDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNS 352 (456)
Q Consensus 273 L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 352 (456)
+++.++.+. .++...+. +.+|+.+.+..+ +.......|.++++|+.+.+.++ +......+|.. .+|+.+.+. +.
T Consensus 185 l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 185 ADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred eecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence 999999887 78777764 789999999854 66666778889999999999875 44355566766 789999995 45
Q ss_pred CccccCccccCCCCCcEEEcCCCccc-----ccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCC
Q 048657 353 LSGRIPRWLGNLTWLQYIIMPNNHLE-----GLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHG 426 (456)
Q Consensus 353 ~~~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~ 426 (456)
++.....+|.+|++|+.+++.++.+. .....+|..|++|+.+++.+ .++......+. +.+|+.+.+..+ + .
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l-~ 335 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-V-T 335 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-C-C
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-c-c
Confidence 66577889999999999999988764 46778999999999999995 47766666666 689999999766 4 5
Q ss_pred CCCcccccCCCcceEEEccCcccC
Q 048657 427 QLKRGTFFNCSSLVTLDLSYNRLN 450 (456)
Q Consensus 427 ~~~~~~~~~~~~L~~L~l~~~~l~ 450 (456)
.++..+|.++ +|+.+++.+|.+.
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCC
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCc
Confidence 7888899999 9999999998765
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=3.6e-14 Score=118.34 Aligned_cols=126 Identities=27% Similarity=0.344 Sum_probs=79.4
Q ss_pred cEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCC
Q 048657 296 ESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN 375 (456)
Q Consensus 296 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 375 (456)
+.++++++.+...... + .++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCC-C--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4566666666543322 1 346677777777666 45566666677777777777766555566666777777777777
Q ss_pred cccccCchhccCCCCCCeEeCcCCccCCCCCcccc-cccccEEEccCcccC
Q 048657 376 HLEGLIPVEFCQLDSLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLH 425 (456)
Q Consensus 376 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~ 425 (456)
.++...+..|..+++|+.|++++|.++..++..+. .++|+.+++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 76666666666666777777777766655544433 456666666666553
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=2.2e-16 Score=153.61 Aligned_cols=182 Identities=20% Similarity=0.237 Sum_probs=128.9
Q ss_pred CCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCc-------------ccccccccccccccccEEE-ccCccccc
Q 048657 266 NMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNN-------------LEGHMFSRNFNLANLKLLQ-LEGNRFVG 331 (456)
Q Consensus 266 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~ 331 (456)
.++.|+.|+++++.+. .+|..+. .+++|+.|+++++. ..+..+..+..+++|+.|+ +..+.+..
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~-~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELE-SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHH-HHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 4555666666666554 5554443 45556655554442 2233344555666777776 44443221
Q ss_pred cccc------ccc--CCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCC
Q 048657 332 EIPQ------SLS--KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISG 403 (456)
Q Consensus 332 ~~~~------~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 403 (456)
++. .+. ....|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 425 -L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 425 -LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp -HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred -hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 100 000 11359999999999984 676 999999999999999999 667899999999999999999997
Q ss_pred CCCcccccccccEEEccCcccCCCCCcccccCCCcceEEEccCcccCCCCC
Q 048657 404 SLPACFHPLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRLNGSIP 454 (456)
Q Consensus 404 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~p 454 (456)
.+ ....+++|+.|++++|.+.+...+..|..+++|+.|++++|++++..|
T Consensus 501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 54 555588999999999999755414448999999999999999997755
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=1.3e-14 Score=115.86 Aligned_cols=127 Identities=26% Similarity=0.236 Sum_probs=64.6
Q ss_pred CCCcEEeccCCcCC-CcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEE
Q 048657 268 KFLQILDLSNNHLT-GEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGL 346 (456)
Q Consensus 268 ~~L~~L~l~~~~l~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 346 (456)
++++.|++++|.+. +.++.. +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34455555555443 233322 12344555555555544433 334445555555555555554344444455566666
Q ss_pred EcCCCcCccc-cCccccCCCCCcEEEcCCCcccccCc---hhccCCCCCCeEeCc
Q 048657 347 HLNNNSLSGR-IPRWLGNLTWLQYIIMPNNHLEGLIP---VEFCQLDSLQILDIS 397 (456)
Q Consensus 347 ~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 397 (456)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666655532 22455556666666666666554443 345555666665554
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=2.2e-15 Score=151.24 Aligned_cols=182 Identities=25% Similarity=0.281 Sum_probs=113.6
Q ss_pred CccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcccccccccccc
Q 048657 259 SIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLS 338 (456)
Q Consensus 259 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 338 (456)
..+..+..++.|+.|++++|.+. .++..++ .+++|++|++++|.+. .++..+..+++|+.|+|++|.++ .+|..+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 290 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELG 290 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhc
Confidence 34667788889999999999887 7777665 6888999999999888 45566788899999999999988 7788888
Q ss_pred CCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCC-CCCeEeCcCCccCCCCCcccccccccEE
Q 048657 339 KCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLD-SLQILDISDNNISGSLPACFHPLSIKQV 417 (456)
Q Consensus 339 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~~L~~l 417 (456)
.+++|++|++++|.++ .+|..|..+++|+.|+|++|.+.+.++..+.... .+..+++++|.+++..+ ..++.|
T Consensus 291 ~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-----~~l~~l 364 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-----HERRFI 364 (727)
T ss_dssp GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CC----
T ss_pred CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-----ccccee
Confidence 9999999999999887 7788899999999999999999877776665432 22346788888876554 356777
Q ss_pred EccCcc----cCCCCCc---ccccCCCcceEEEccCcccC
Q 048657 418 HLSKNM----LHGQLKR---GTFFNCSSLVTLDLSYNRLN 450 (456)
Q Consensus 418 ~l~~~~----~~~~~~~---~~~~~~~~L~~L~l~~~~l~ 450 (456)
+++.|. ..+.++. ..+.++..+....+++|-+.
T Consensus 365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------------------------------------CCC
T ss_pred EeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 777661 1122221 12444556666777777665
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=1.2e-13 Score=115.07 Aligned_cols=128 Identities=25% Similarity=0.273 Sum_probs=90.8
Q ss_pred cEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCC
Q 048657 271 QILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNN 350 (456)
Q Consensus 271 ~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 350 (456)
+.++++++.+. .+|..+ .+++++|++++|.+.... ..+..+++|+.|++++|.+++..+..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 45666666665 555433 346777777777766433 5566777777777777777765566677778888888888
Q ss_pred CcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCC
Q 048657 351 NSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISG 403 (456)
Q Consensus 351 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 403 (456)
|.++...+..|..+++|+.|++++|.++...+..|..+++|+.|++++|++..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 87776666677778888888888888776666667777888888888877653
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=2.4e-14 Score=117.81 Aligned_cols=107 Identities=21% Similarity=0.131 Sum_probs=49.9
Q ss_pred CCcccEEEccCCccccccccccccc-ccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEE
Q 048657 292 CVNLESLALSNNNLEGHMFSRNFNL-ANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYI 370 (456)
Q Consensus 292 ~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 370 (456)
+.+|++|++++|.+... + .+..+ ++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+.|
T Consensus 18 ~~~L~~L~l~~n~l~~i-~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI-E-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCSC-C-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCchh-H-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 44555555555555432 1 12222 2555555555555422 344455555555555555543222333445555555
Q ss_pred EcCCCcccccCc-hhccCCCCCCeEeCcCCccC
Q 048657 371 IMPNNHLEGLIP-VEFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 371 ~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~ 402 (456)
++++|.++.... ..+..+++|+.|++++|+++
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 555555542211 13444555555555555544
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=1.7e-13 Score=112.83 Aligned_cols=132 Identities=23% Similarity=0.189 Sum_probs=88.1
Q ss_pred CcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcC
Q 048657 270 LQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLN 349 (456)
Q Consensus 270 L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 349 (456)
.+.++++++.+. .+|... .+++++|++++|++.+.....+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 356666666665 555332 3567777777777665555555667777777777777764444556677777777777
Q ss_pred CCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCCccCCCC
Q 048657 350 NNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSL 405 (456)
Q Consensus 350 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 405 (456)
+|.+++..+..+..+++|+.|++++|.+++.++..+..+++|+.|++++|++.+..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 77777555556677777777777777777665555667777777777777776543
No 137
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.52 E-value=2.9e-12 Score=119.81 Aligned_cols=128 Identities=13% Similarity=0.192 Sum_probs=60.0
Q ss_pred cCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcE
Q 048657 290 VGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQY 369 (456)
Q Consensus 290 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 369 (456)
..+..|+.+.+.... .......|.++++|+.+.+.. .+......+|..|.+|+.+++..+ ++.....+|.+|++|+.
T Consensus 262 ~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 262 DSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp TTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred eecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 344455555544321 122223344555555555542 222233445666666666666543 44344556666666666
Q ss_pred EEcCCCcccccCchhccCCCCCCeEeCcCCccCCCCCcccccccccEEEccCcc
Q 048657 370 IIMPNNHLEGLIPVEFCQLDSLQILDISDNNISGSLPACFHPLSIKQVHLSKNM 423 (456)
Q Consensus 370 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~l~l~~~~ 423 (456)
+.+..+ ++.+...+|.+|++|+.+++.++.... .....+..|+.+.+..+.
T Consensus 339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp EEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC---------
T ss_pred EEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCC
Confidence 666543 444555666666666666666654321 122234556666555443
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=8.6e-15 Score=147.00 Aligned_cols=190 Identities=22% Similarity=0.254 Sum_probs=113.6
Q ss_pred CcceEEEccCCccCCCccccccCCCCCcEEeccC-----CcCCCcccchhhcCCCcccEEEccCCccccccccccccccc
Q 048657 244 PSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSN-----NHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLAN 318 (456)
Q Consensus 244 ~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~-----~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 318 (456)
+.+..+++..+.+.. .+..+.....|..+.+.. +.+ .++...+..++.|+.|++++|.+.... ..+..+++
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIFNIS-ANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCC-GGGGGCCS
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCCCCCC-hhhcCCCC
Confidence 457777787776653 333332333333333322 222 123344457889999999999988543 44458899
Q ss_pred ccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcC
Q 048657 319 LKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISD 398 (456)
Q Consensus 319 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 398 (456)
|+.|+|++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+.|+|++|.++ .+|..|..+++|+.|+|++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 999999999998 78888999999999999999998 77889999999999999999997 4566799999999999999
Q ss_pred CccCCCCCcccccc--cccEEEccCcccCCCCCcccccCCCcceEEEccCc
Q 048657 399 NNISGSLPACFHPL--SIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYN 447 (456)
Q Consensus 399 ~~l~~~~~~~~~~~--~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 447 (456)
|++++.++..+... ....+++++|.+.+.+|. .|+.|+++.|
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n 369 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINTD 369 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C---------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCcc-------ccceeEeecc
Confidence 99988777666432 334577889988765554 3455666655
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=1.2e-13 Score=113.52 Aligned_cols=134 Identities=21% Similarity=0.221 Sum_probs=100.4
Q ss_pred ccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCC
Q 048657 264 FGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSL 343 (456)
Q Consensus 264 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 343 (456)
+..+++|+.|++++|.+. .++. +....++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 455777888888888776 5543 332345888888888887764 566778888999999988874444445788899
Q ss_pred cEEEcCCCcCccccCc--cccCCCCCcEEEcCCCcccccCch---hccCCCCCCeEeCcCCccC
Q 048657 344 EGLHLNNNSLSGRIPR--WLGNLTWLQYIIMPNNHLEGLIPV---EFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 344 ~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~l~ 402 (456)
++|++++|.++ .++. .+..+++|+.|++++|.+...... .+..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999886 4454 788889999999999988754332 4778889999999888754
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.45 E-value=5.8e-12 Score=117.72 Aligned_cols=132 Identities=11% Similarity=0.166 Sum_probs=76.2
Q ss_pred cccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCC
Q 048657 310 FSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLD 389 (456)
Q Consensus 310 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 389 (456)
...|..+..|+.+.+.+.... ....+|.+++.|+.+.+.. .++.....+|.+|++|+.+++..+ ++.+...+|.+|+
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 345566777777777654433 4455667777777777753 344455567777777777777654 4445566777777
Q ss_pred CCCeEeCcCCccCCCCCcccc-cccccEEEccCcccCCCCCcccccCCCcceEEEccCccc
Q 048657 390 SLQILDISDNNISGSLPACFH-PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449 (456)
Q Consensus 390 ~L~~L~l~~~~l~~~~~~~~~-~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 449 (456)
+|+++.+..+ ++......+. +.+|+.+++.++... . ..|..+.+|+.+.+..+.+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~--~--~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ--W--NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH--H--HTCBCCCCC----------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee--h--hhhhccCCCCEEEeCCCCE
Confidence 7777777543 5444444444 577777777776431 1 2356667777777765543
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=5.8e-12 Score=102.59 Aligned_cols=105 Identities=22% Similarity=0.284 Sum_probs=72.9
Q ss_pred cccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCc
Q 048657 318 NLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDIS 397 (456)
Q Consensus 318 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 397 (456)
..+.++++++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3467777777776 455444 3677777777777776666777777777777777777776666666777777777777
Q ss_pred CCccCCCCCcccc-cccccEEEccCcccC
Q 048657 398 DNNISGSLPACFH-PLSIKQVHLSKNMLH 425 (456)
Q Consensus 398 ~~~l~~~~~~~~~-~~~L~~l~l~~~~~~ 425 (456)
+|++++.++..+. .++|+.|++++|.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7777766655443 567777777777664
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=4.7e-15 Score=124.60 Aligned_cols=132 Identities=24% Similarity=0.276 Sum_probs=63.6
Q ss_pred CCCCCcEEeccCCcCCCcccc-----hhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCC
Q 048657 266 NMKFLQILDLSNNHLTGEIPE-----HLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKC 340 (456)
Q Consensus 266 ~~~~L~~L~l~~~~l~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 340 (456)
..+.++.++++.+.+.+..+. ..+..+++|++|++++|.+.+.. .+..+++|+.|++++|.+. .+|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 344555555555555433332 01224555555555555554422 4445555555555555554 344444444
Q ss_pred CCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCc-hhccCCCCCCeEeCcCCccC
Q 048657 341 SSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIP-VEFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 341 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~ 402 (456)
++|++|++++|.+++ ++ .+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|++.
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 555555555555542 22 34445555555555555543221 23444555555555555444
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=1.1e-11 Score=101.26 Aligned_cols=103 Identities=24% Similarity=0.360 Sum_probs=75.4
Q ss_pred cEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcCC
Q 048657 320 KLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISDN 399 (456)
Q Consensus 320 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 399 (456)
+.++++++.+. .+|..+. ++|++|++++|.+++..+..|.++++|+.|++++|.+++.++..|..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57777777776 5555443 67888888888887666777778888888888888887666666777788888888888
Q ss_pred ccCCCCCcccc-cccccEEEccCcccC
Q 048657 400 NISGSLPACFH-PLSIKQVHLSKNMLH 425 (456)
Q Consensus 400 ~l~~~~~~~~~-~~~L~~l~l~~~~~~ 425 (456)
++++.++..+. +++|+.|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 87766655343 667777777777774
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=3.1e-14 Score=119.52 Aligned_cols=133 Identities=22% Similarity=0.237 Sum_probs=85.9
Q ss_pred cccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCC
Q 048657 263 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSS 342 (456)
Q Consensus 263 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 342 (456)
.+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.. .+..+..+++|+.|++++|.+.+ .+ .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~-~l~--~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE-KIS--SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEES-CCC--CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCc-ccc--ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 5666677777777777666 454 23356677777777776664 23344455777777777777763 33 5666777
Q ss_pred CcEEEcCCCcCccccC-ccccCCCCCcEEEcCCCcccccCch----------hccCCCCCCeEeCcCCccCC
Q 048657 343 LEGLHLNNNSLSGRIP-RWLGNLTWLQYIIMPNNHLEGLIPV----------EFCQLDSLQILDISDNNISG 403 (456)
Q Consensus 343 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~----------~~~~~~~L~~L~l~~~~l~~ 403 (456)
|++|++++|.+++..+ ..+..+++|+.|++++|.+.+..+. .+..+++|+.|+ ++.++.
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 7777777777763222 3567777888888888877554332 366778888776 555553
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.31 E-value=3.1e-13 Score=124.52 Aligned_cols=137 Identities=18% Similarity=0.147 Sum_probs=76.1
Q ss_pred CCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccc-----cccccccEEEccCcccccc----cccccc
Q 048657 268 KFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRN-----FNLANLKLLQLEGNRFVGE----IPQSLS 338 (456)
Q Consensus 268 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~----~~~~~~ 338 (456)
++|++|++++|.+.+.....+...+++|++|++++|.+++.....+ ...++|++|++++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 4666666666666533333333344566666666666654333222 1245666666666666432 233345
Q ss_pred CCCCCcEEEcCCCcCcccc----CccccCCCCCcEEEcCCCcccccC----chhccCCCCCCeEeCcCCccCCC
Q 048657 339 KCSSLEGLHLNNNSLSGRI----PRWLGNLTWLQYIIMPNNHLEGLI----PVEFCQLDSLQILDISDNNISGS 404 (456)
Q Consensus 339 ~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~ 404 (456)
.+++|++|++++|.+++.. ...+..+++|++|++++|.++... +..+...++|+.|++++|.++..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 5666777777777665432 344555666777777776665432 23334456667777776666543
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.30 E-value=1.9e-11 Score=99.53 Aligned_cols=106 Identities=21% Similarity=0.211 Sum_probs=63.2
Q ss_pred cEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCC
Q 048657 296 ESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNN 375 (456)
Q Consensus 296 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 375 (456)
+.++++++.++..... + .++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~-~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTG-I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCcc-C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4444555444432211 1 255666666666666544555666666666666666666555555666666777777777
Q ss_pred cccccCchhccCCCCCCeEeCcCCccCCC
Q 048657 376 HLEGLIPVEFCQLDSLQILDISDNNISGS 404 (456)
Q Consensus 376 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 404 (456)
.+++..+..|..+++|+.|++++|++...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 66655555566666777777777766543
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.28 E-value=6e-10 Score=103.54 Aligned_cols=130 Identities=18% Similarity=0.213 Sum_probs=68.4
Q ss_pred ccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCccccccccccccCCCCC
Q 048657 264 FGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIPQSLSKCSSL 343 (456)
Q Consensus 264 l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 343 (456)
+..+..++.+.+..+ +. .+....+..+..|+.+.+..+ ++......+..+.+|+.+.+... +.......|..|++|
T Consensus 213 f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred cccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 344555555555433 22 333333445555666655443 33333344455556666665433 222333455666666
Q ss_pred cEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcC
Q 048657 344 EGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISD 398 (456)
Q Consensus 344 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 398 (456)
+.+.+.++.++.....+|.+|++|+.+.+..+ ++.+...+|.+|++|+++.+..
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 66666655555445556666666666666543 3334455666666666666644
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.26 E-value=6.1e-10 Score=103.52 Aligned_cols=142 Identities=17% Similarity=0.167 Sum_probs=105.0
Q ss_pred cCCcceEEEccCCccCCCccccccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCcccccccccccccccccE
Q 048657 242 VLPSLYVFNNSMNALDGSIPSSFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKL 321 (456)
Q Consensus 242 ~~~~L~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 321 (456)
....++.+.+... +...-..++..+..|+.+.+..+ +. .+....+..+.+|+.+.+... +.......|.++.+|+.
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 3567777777543 22233446778889999999765 44 666666777889999988654 44455567788999999
Q ss_pred EEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCC
Q 048657 322 LQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLD 389 (456)
Q Consensus 322 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 389 (456)
+.+.++.+......+|.+|.+|+.+.+..+ ++.....+|.+|++|+.+.+..+ ++.+...+|.++.
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 999888777566778999999999999754 65566778999999999999765 5545667777664
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=4.3e-11 Score=97.75 Aligned_cols=88 Identities=23% Similarity=0.257 Sum_probs=55.2
Q ss_pred ccccEEEccCccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeC
Q 048657 317 ANLKLLQLEGNRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDI 396 (456)
Q Consensus 317 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 396 (456)
++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+.++..|..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 45566666666665444555666666666666666666444444566666777777777666555555666677777777
Q ss_pred cCCccCCC
Q 048657 397 SDNNISGS 404 (456)
Q Consensus 397 ~~~~l~~~ 404 (456)
++|++...
T Consensus 113 ~~N~~~c~ 120 (174)
T 2r9u_A 113 YNNPWDCE 120 (174)
T ss_dssp CSSCBCTT
T ss_pred CCCCcccc
Confidence 77766543
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=2.2e-12 Score=118.88 Aligned_cols=183 Identities=17% Similarity=0.135 Sum_probs=125.0
Q ss_pred CCCCcEEeccCCcCCCcccchhh----cCCCcccEEEccCCcccccccccc-cccccccEEEccCccccccccccc----
Q 048657 267 MKFLQILDLSNNHLTGEIPEHLA----VGCVNLESLALSNNNLEGHMFSRN-FNLANLKLLQLEGNRFVGEIPQSL---- 337 (456)
Q Consensus 267 ~~~L~~L~l~~~~l~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~---- 337 (456)
.+.|+.|++++|.+.......+. ...++|++|++++|.+++.....+ ..+++|+.|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45678888888887632222221 134689999999999876444333 246789999999999975433333
Q ss_pred -cCCCCCcEEEcCCCcCccc----cCccccCCCCCcEEEcCCCcccccC----chhccCCCCCCeEeCcCCccCCCCCcc
Q 048657 338 -SKCSSLEGLHLNNNSLSGR----IPRWLGNLTWLQYIIMPNNHLEGLI----PVEFCQLDSLQILDISDNNISGSLPAC 408 (456)
Q Consensus 338 -~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~ 408 (456)
...+.|++|++++|.+++. ++..+..+++|++|++++|.+++.. +..+...++|+.|++++|.++......
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3578999999999998753 3445577899999999999987543 456677889999999999987644333
Q ss_pred cc-----cccccEEEccCcccCCCCCcccccCC---C--cceEEE--ccCcccC
Q 048657 409 FH-----PLSIKQVHLSKNMLHGQLKRGTFFNC---S--SLVTLD--LSYNRLN 450 (456)
Q Consensus 409 ~~-----~~~L~~l~l~~~~~~~~~~~~~~~~~---~--~L~~L~--l~~~~l~ 450 (456)
+. .++|++|++++|.+.+ .....+... . .++.+. +..+.++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~-~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS-EGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH-HHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH-HHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 22 5789999999999853 333334322 1 166666 5555544
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=1.9e-10 Score=105.51 Aligned_cols=96 Identities=27% Similarity=0.308 Sum_probs=56.2
Q ss_pred cccchhhhHHhhcCCCccEEeccC-CCCCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCcccccc
Q 048657 6 ALNTSFLQIIGESMPSLKYLSLSD-SNSSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLTGSI 84 (456)
Q Consensus 6 ~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~ 84 (456)
++++ +|. ++. +++|++|+|++ |.++.++...|.++++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+
T Consensus 20 ~l~~-ip~-l~~-~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~ 95 (347)
T 2ifg_A 20 ALDS-LHH-LPG-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SL 95 (347)
T ss_dssp CCTT-TTT-SCS-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CC
T ss_pred CCCc-cCC-CCC-CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-ee
Confidence 4443 455 555 66666666664 5566666555666666666666666666555556666666666666666665 45
Q ss_pred CCCCCcCCCCccEEEcCCceee
Q 048657 85 SSSPLVHLTSIEELMLSNNHFQ 106 (456)
Q Consensus 85 ~~~~~~~l~~L~~L~l~~~~~~ 106 (456)
+...+..++ |++|++.+|.+.
T Consensus 96 ~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 96 SWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSTTTCSCC-CCEEECCSSCCC
T ss_pred CHHHcccCC-ceEEEeeCCCcc
Confidence 543444443 666666666554
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=6.4e-10 Score=102.05 Aligned_cols=104 Identities=21% Similarity=0.140 Sum_probs=74.3
Q ss_pred EEEccCC-cccccccccccccccccEEEccC-ccccccccccccCCCCCcEEEcCCCcCccccCccccCCCCCcEEEcCC
Q 048657 297 SLALSNN-NLEGHMFSRNFNLANLKLLQLEG-NRFVGEIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLTWLQYIIMPN 374 (456)
Q Consensus 297 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 374 (456)
.++.+++ +++.. +. +..+.+|+.|+|++ |.+.+..+..|..+++|+.|++++|.+++..+..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 66653 33 66777788888875 777755556677788888888888887766677777788888888888
Q ss_pred CcccccCchhccCCCCCCeEeCcCCccCC
Q 048657 375 NHLEGLIPVEFCQLDSLQILDISDNNISG 403 (456)
Q Consensus 375 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 403 (456)
|.+++.++..+..++ |+.|++.+|++..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 887766665665554 8888888877764
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=4.9e-09 Score=95.66 Aligned_cols=136 Identities=16% Similarity=0.175 Sum_probs=62.0
Q ss_pred cccCCCCCcEEeccCCcCCCcccchhhcCCCcccEEEccCCccccccccccc--ccccccEEEccCc--ccccc-----c
Q 048657 263 SFGNMKFLQILDLSNNHLTGEIPEHLAVGCVNLESLALSNNNLEGHMFSRNF--NLANLKLLQLEGN--RFVGE-----I 333 (456)
Q Consensus 263 ~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~--~~~~~-----~ 333 (456)
.+..+|+|+.|.++++.-. .++. + ..++|++|.+..|.+.......+. .+++|++|+|+.+ ...+. +
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 3445566666666554211 1111 1 245566666665555433332222 4556666655321 11000 1
Q ss_pred cccc--cCCCCCcEEEcCCCcCccccCccc---cCCCCCcEEEcCCCcccccCc----hhccCCCCCCeEeCcCCccC
Q 048657 334 PQSL--SKCSSLEGLHLNNNSLSGRIPRWL---GNLTWLQYIIMPNNHLEGLIP----VEFCQLDSLQILDISDNNIS 402 (456)
Q Consensus 334 ~~~~--~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~l~ 402 (456)
...+ ..+++|+.|++.+|.+.+..+..+ ..+++|++|+|+.|.+++..+ ..+..+++|+.|++++|.++
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 1111 235666666666665543222222 135566666666665554322 12233456666666666554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.72 E-value=1.3e-08 Score=92.85 Aligned_cols=178 Identities=13% Similarity=0.137 Sum_probs=107.4
Q ss_pred ccCCCCCcEEeccCCcCC---------CcccchhhcCCCcccEEEccCCcccccccccccccccccEEEccCcccccccc
Q 048657 264 FGNMKFLQILDLSNNHLT---------GEIPEHLAVGCVNLESLALSNNNLEGHMFSRNFNLANLKLLQLEGNRFVGEIP 334 (456)
Q Consensus 264 l~~~~~L~~L~l~~~~l~---------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 334 (456)
+..+++|+.|.+.+.... +.+ ..+...+|+|+.|.++++.-.... .+ ..++|+.|++..+.+.....
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L-~~ll~~~P~L~~L~L~g~~~l~l~--~~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDL-SPVLDAMPLLNNLKIKGTNNLSIG--KK-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBC-HHHHHTCTTCCEEEEECCBTCBCC--SC-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCH-HHHHhcCCCCcEEEEeCCCCceec--cc-cCCCCcEEEEecCCCChHHH
Confidence 445667777766543221 012 233456899999999887311211 12 37899999999888764333
Q ss_pred cccc--CCCCCcEEEcCCC--cC-cc----ccCccc--cCCCCCcEEEcCCCcccccCchhcc---CCCCCCeEeCcCCc
Q 048657 335 QSLS--KCSSLEGLHLNNN--SL-SG----RIPRWL--GNLTWLQYIIMPNNHLEGLIPVEFC---QLDSLQILDISDNN 400 (456)
Q Consensus 335 ~~~~--~l~~L~~L~l~~~--~~-~~----~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~~~ 400 (456)
..+. .+|+|+.|+++.+ .. .+ .+...+ ..+++|+.|++.+|.+++..+..+. .+++|++|+++.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 3333 6899999998531 11 11 111122 2478999999999988754333332 57889999999998
Q ss_pred cCCCCCcc-----cccccccEEEccCcccCCCCCcccccC-CCcceEEEccCcc
Q 048657 401 ISGSLPAC-----FHPLSIKQVHLSKNMLHGQLKRGTFFN-CSSLVTLDLSYNR 448 (456)
Q Consensus 401 l~~~~~~~-----~~~~~L~~l~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~ 448 (456)
+.+..... -.+++|+.|++++|.+... ....+.. + ...+++++++
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~-~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINMKYNYLSDE-MKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH-HHHHHHHHC--CSEEECCSBC
T ss_pred CChHHHHHHHhhcccCCcceEEECCCCcCCHH-HHHHHHHHc--CCEEEecCCc
Confidence 87642211 1257899999998876422 2221221 1 2557777665
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.61 E-value=1.7e-08 Score=83.10 Aligned_cols=120 Identities=20% Similarity=0.171 Sum_probs=89.2
Q ss_pred hhhhHHhhcCCCccEEeccCC-CCCCccc----ccccCCCCCcEEEcccCccccc----chhhhhcCCCCcEEeccCCcc
Q 048657 10 SFLQIIGESMPSLKYLSLSDS-NSSRILD----RGLCSLVHLQELYIDNNDLRGS----LPWCLANMTSLRILDVSSNQL 80 (456)
Q Consensus 10 ~~~~~~~~~~~~L~~L~L~~~-~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i 80 (456)
.+...+.. .+.|++|+|++| .+++... +.+...+.|++|+|++|.+.+. +...+...+.|++|++++|.+
T Consensus 27 ~l~~~l~~-~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 27 TLKRIQNN-DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp HHHHHHTT-CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred HHHHHHhc-CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence 34445555 899999999999 7776433 3556789999999999998753 345566678999999999998
Q ss_pred ccc----cCCCCCcCCCCccEEEc--CCceeeecc---CCCcccccccceEEeccCcccc
Q 048657 81 TGS----ISSSPLVHLTSIEELML--SNNHFQIPI---SLEPFFNHSRLKFFYAENNQIN 131 (456)
Q Consensus 81 ~~~----~~~~~~~~l~~L~~L~l--~~~~~~~~~---~~~~~~~~~~L~~l~l~~~~~~ 131 (456)
++. +.. ++...++|++|++ ++|.+.... ....+...++|++|++++|.+.
T Consensus 106 ~~~g~~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 106 SGSGILALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CHHHHHHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CHHHHHHHHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 832 333 5677889999999 888887321 2334556688999999988774
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.51 E-value=3.1e-08 Score=79.26 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=51.5
Q ss_pred CCccEEeccCCCCCCcccccccCCCCCcEEEcccCc-ccccchhhhhcC----CCCcEEeccCCc-cccccCCCCCcCCC
Q 048657 20 PSLKYLSLSDSNSSRILDRGLCSLVHLQELYIDNND-LRGSLPWCLANM----TSLRILDVSSNQ-LTGSISSSPLVHLT 93 (456)
Q Consensus 20 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-i~~~~~~~~~~~l~ 93 (456)
..|+.||+++|.+++.....+.+|++|++|+|++|. +++..-..++.+ ++|++|++++|. +|+. .-..+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHhcCC
Confidence 357777777777666665666677777777777773 555444555543 367777777763 5522 111355566
Q ss_pred CccEEEcCCce
Q 048657 94 SIEELMLSNNH 104 (456)
Q Consensus 94 ~L~~L~l~~~~ 104 (456)
+|++|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 67777766663
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=4.7e-08 Score=80.40 Aligned_cols=19 Identities=21% Similarity=0.155 Sum_probs=10.3
Q ss_pred cccCCCCCcEEeccCC-cCC
Q 048657 263 SFGNMKFLQILDLSNN-HLT 281 (456)
Q Consensus 263 ~l~~~~~L~~L~l~~~-~l~ 281 (456)
.+...+.|++|++++| .+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~ 50 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIP 50 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCC
T ss_pred HHhcCCCCCEEEecCCCCCC
Confidence 3444555666666555 554
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=2.9e-08 Score=79.42 Aligned_cols=34 Identities=9% Similarity=0.140 Sum_probs=15.8
Q ss_pred cccEEEccCCcccccccccccccccccEEEccCc
Q 048657 294 NLESLALSNNNLEGHMFSRNFNLANLKLLQLEGN 327 (456)
Q Consensus 294 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 327 (456)
+|+++++++|.+++.....+..+++|++|++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3555555555544443333444444444444444
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=1.9e-06 Score=74.43 Aligned_cols=80 Identities=24% Similarity=0.265 Sum_probs=44.0
Q ss_pred CCCCCcEEEcccCcccc--cchhhhhcCCCCcEEeccCCccccccCCCCCcCCC--CccEEEcCCceeeeccC------C
Q 048657 42 SLVHLQELYIDNNDLRG--SLPWCLANMTSLRILDVSSNQLTGSISSSPLVHLT--SIEELMLSNNHFQIPIS------L 111 (456)
Q Consensus 42 ~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~------~ 111 (456)
++++|++|+|++|.+++ .++..+..+++|++|+|++|.++ .+. .+..++ +|++|.+++|.+....+ .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SER--ELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SGG--GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cch--hhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45666666666666654 23345556666666666666666 332 123333 66666666666542211 1
Q ss_pred CcccccccceEEe
Q 048657 112 EPFFNHSRLKFFY 124 (456)
Q Consensus 112 ~~~~~~~~L~~l~ 124 (456)
..+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2344566666664
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.00 E-value=6.5e-06 Score=71.08 Aligned_cols=62 Identities=26% Similarity=0.370 Sum_probs=30.3
Q ss_pred cccccEEEccCccccc--cccccccCCCCCcEEEcCCCcCccccCccccCCC--CCcEEEcCCCcccc
Q 048657 316 LANLKLLQLEGNRFVG--EIPQSLSKCSSLEGLHLNNNSLSGRIPRWLGNLT--WLQYIIMPNNHLEG 379 (456)
Q Consensus 316 ~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~ 379 (456)
+++|+.|+|++|.+.+ .++..+..+++|+.|++++|.+.+. +.+..+. +|++|++++|.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 4555555555555543 1223344555555666655555432 1122222 55555555555543
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.33 E-value=0.0001 Score=60.03 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=17.5
Q ss_pred cCCCCCcEEEcCCCcCcccc----CccccCCCCCcEEEcCCCccc
Q 048657 338 SKCSSLEGLHLNNNSLSGRI----PRWLGNLTWLQYIIMPNNHLE 378 (456)
Q Consensus 338 ~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~ 378 (456)
..-+.|++|++++|++.+.. .+.+...++|++|+|+.|.|+
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 33444444444444444222 222233444555555554444
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.31 E-value=0.00013 Score=59.44 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=38.0
Q ss_pred ccccEEEccCcccccc----ccccccCCCCCcEEEcCCCcCccc----cCccccCCCCCcEEEcCCC---cccc----cC
Q 048657 317 ANLKLLQLEGNRFVGE----IPQSLSKCSSLEGLHLNNNSLSGR----IPRWLGNLTWLQYIIMPNN---HLEG----LI 381 (456)
Q Consensus 317 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~---~~~~----~~ 381 (456)
..|+.|+|++|.+.+. +...+..-+.|++|++++|.+++. +.+.+...+.|++|+|+++ .+.. .+
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 3444444444444321 223333445555555555555432 2234444555666666543 2221 12
Q ss_pred chhccCCCCCCeEeCcCC
Q 048657 382 PVEFCQLDSLQILDISDN 399 (456)
Q Consensus 382 ~~~~~~~~~L~~L~l~~~ 399 (456)
...+..-++|++|+++.+
T Consensus 150 a~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHCSSCCEEECCCC
T ss_pred HHHHHhCCCcCeEeccCC
Confidence 233444455666666544
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.75 E-value=0.00097 Score=50.64 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=32.8
Q ss_pred EEeccCCCCC--CcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccCCccc
Q 048657 24 YLSLSDSNSS--RILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSSNQLT 81 (456)
Q Consensus 24 ~L~L~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 81 (456)
+++-+++.++ .++. .+. ++|++|+|++|.++...+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCC-CCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5555555555 5552 221 25677777777776555556666777777777766543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.75 E-value=0.0032 Score=47.76 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=20.9
Q ss_pred cccccEEEccCcccCCCCCcccccCCCcceEEEccCccc
Q 048657 411 PLSIKQVHLSKNMLHGQLKRGTFFNCSSLVTLDLSYNRL 449 (456)
Q Consensus 411 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 449 (456)
+.+++.|+|++|.+. .++.+.|..+++|+.|+|++|++
T Consensus 30 p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 30 PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCC
T ss_pred CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCe
Confidence 334555555555553 45555555555666666665553
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=85.14 E-value=0.97 Score=31.97 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=25.5
Q ss_pred CccccCccccCCCCCcEEEcCCCcccccCchhccCCCCCCeEeCcC
Q 048657 353 LSGRIPRWLGNLTWLQYIIMPNNHLEGLIPVEFCQLDSLQILDISD 398 (456)
Q Consensus 353 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 398 (456)
++.+...+|.+|++|+.+.|..+ ++.+...+|..|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 34444456666666666666553 2334455666666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=81.71 E-value=1.4 Score=31.13 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=23.3
Q ss_pred CCCcccccccCCCCCcEEEcccCcccccchhhhhcCCCCcEEeccC
Q 048657 32 SSRILDRGLCSLVHLQELYIDNNDLRGSLPWCLANMTSLRILDVSS 77 (456)
Q Consensus 32 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 77 (456)
++.+...+|.+|..|+.+.+..+ ++.....+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 45555555556666666655443 2223344555555555555544
Done!