Query 048658
Match_columns 83
No_of_seqs 87 out of 89
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 20:33:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cov_D Beta-1,3-xylanase; carb 60.6 3 0.0001 27.9 1.1 50 8-59 16-77 (104)
2 2jrw_A Cyclic extended PEP.1; 31.4 15 0.00052 18.9 0.7 10 66-75 10-19 (26)
3 3n3f_A Collagen alpha-1(XV) ch 23.8 16 0.00053 21.5 -0.1 15 21-35 32-46 (54)
4 3hsh_A Endostatin, collagen al 20.1 20 0.00067 21.3 -0.2 15 21-35 34-48 (56)
5 1j8b_A YBAB; hypothetical prot 15.7 1.1E+02 0.0039 19.6 2.7 42 33-74 20-66 (112)
6 2kzf_A RBFA, ribosome-binding 15.4 1.8E+02 0.006 18.2 3.5 37 32-69 14-55 (106)
7 1ybx_A Conserved hypothetical 15.4 1.4E+02 0.0049 20.3 3.3 26 52-77 77-102 (143)
8 2iuk_A SEED lipoxygenase; iron 15.2 54 0.0019 28.5 1.3 20 63-82 165-184 (864)
9 2e7g_A Putative ribosome-bindi 15.0 73 0.0025 20.7 1.6 22 49-70 43-64 (129)
10 2qdf_A OMP85, outer membrane p 13.9 2.3E+02 0.008 19.7 4.2 55 22-78 30-94 (335)
No 1
>2cov_D Beta-1,3-xylanase; carbohydrate-binding module, family 31 CBM, beta-1,3-xylanas binding protein; 1.25A {Alcaligenes SP}
Probab=60.56 E-value=3 Score=27.92 Aligned_cols=50 Identities=22% Similarity=0.374 Sum_probs=32.3
Q ss_pred CeeeeeeeeeeEEeeccccCcccchhhccHH---------HHHH---HHhCcceeeEEEEEEec
Q 048658 8 TIQAVTRVKPYICTMPLRLDDGWNQIQLNLA---------DFTR---RAYGTNYVETLRVQVHA 59 (83)
Q Consensus 8 nfq~~trV~p~~c~mPL~L~~gWn~i~~nL~---------~~t~---~aygT~Y~et~rv~IhA 59 (83)
||.+++-+.-|+... .-+.|||+||+|== .|+| -..|..|-=|.+|+=.+
T Consensus 16 ~Yvsds~ievfH~d~--gWsAgwnY~CLd~yCl~g~ks~g~f~r~F~a~LGqtY~i~FKVeD~~ 77 (104)
T 2cov_D 16 NYVSDQEIEVYHVDK--GWSAGWNYVCLNDYCLPGNKSNGAFRKTFNAVLGQDYKLTFKVEDRY 77 (104)
T ss_dssp EEEETTEEEEEEECC--CCCCSSEEEEETTEEEECEEETTEEEEEEECCTTCEEEEEEEEEETT
T ss_pred eeecCCeEEEEEecC--CccceeeEEEecCeeccccccCCeeeeeechhcCcceeEEEEEeccc
Confidence 566666676666544 77999999998821 2222 23477777777776533
No 2
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=31.43 E-value=15 Score=18.93 Aligned_cols=10 Identities=50% Similarity=0.879 Sum_probs=8.4
Q ss_pred eeecccCCCc
Q 048658 66 IYFSDRLYSE 75 (83)
Q Consensus 66 IYFsdrlYs~ 75 (83)
-|||+|.|..
T Consensus 10 nyfserpyhp 19 (26)
T 2jrw_A 10 NYFSERPYHP 19 (26)
T ss_dssp SSCCSSSCCS
T ss_pred hhcccCCCCC
Confidence 4899999975
No 3
>3n3f_A Collagen alpha-1(XV) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association, chain selection helix; 2.00A {Homo sapiens}
Probab=23.79 E-value=16 Score=21.53 Aligned_cols=15 Identities=40% Similarity=0.977 Sum_probs=11.4
Q ss_pred eeccccCcccchhhc
Q 048658 21 TMPLRLDDGWNQIQL 35 (83)
Q Consensus 21 ~mPL~L~~gWn~i~~ 35 (83)
.+=+|...||.+|++
T Consensus 32 eLyiRVr~Gwr~v~L 46 (54)
T 3n3f_A 32 EFFIRVRDGWKKLQL 46 (54)
T ss_dssp EEEEEETTEEEECCC
T ss_pred eEEEEEcCceeeeec
Confidence 344677899999886
No 4
>3hsh_A Endostatin, collagen alpha-1(XVIII) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association; 1.80A {Homo sapiens} PDB: 3hon_A
Probab=20.08 E-value=20 Score=21.29 Aligned_cols=15 Identities=27% Similarity=0.729 Sum_probs=11.2
Q ss_pred eeccccCcccchhhc
Q 048658 21 TMPLRLDDGWNQIQL 35 (83)
Q Consensus 21 ~mPL~L~~gWn~i~~ 35 (83)
.+=+|...||.+|++
T Consensus 34 eLyiRVr~Gwr~v~L 48 (56)
T 3hsh_A 34 ELYVRVQNGFRKVQL 48 (56)
T ss_dssp EEEEEETTEEEEECE
T ss_pred eEEEEEcCceeeeee
Confidence 344677899999875
No 5
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=15.66 E-value=1.1e+02 Score=19.62 Aligned_cols=42 Identities=12% Similarity=0.210 Sum_probs=29.4
Q ss_pred hhccHHHHHHHHhCcceeeE-----EEEEEecceeeEEeeecccCCC
Q 048658 33 IQLNLADFTRRAYGTNYVET-----LRVQVHANYRLRRIYFSDRLYS 74 (83)
Q Consensus 33 i~~nL~~~t~~aygT~Y~et-----~rv~IhANCRlRRIYFsdrlYs 74 (83)
+|=.+++.-.+.=...+..+ ++|.+.++..|++|-+.+.+..
T Consensus 20 mQ~~m~~~QeeL~~~~v~g~sggG~V~Vt~~G~~ev~~i~Idp~~~~ 66 (112)
T 1j8b_A 20 MQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLME 66 (112)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEGGGTEEEEEETTCCEEEEEECGGGGG
T ss_pred HHHHHHHHHHHHhccEEEEEECCCEEEEEEecCceEEEEEECHHHHh
Confidence 34444444444444444443 7899999999999999999986
No 6
>2kzf_A RBFA, ribosome-binding factor A; JCSG, joint center structural genomics, PSI-biology, protein structure initiative; NMR {Thermotoga maritima}
Probab=15.43 E-value=1.8e+02 Score=18.17 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=27.4
Q ss_pred hhhccHHHHHHHHhCc-----ceeeEEEEEEecceeeEEeeec
Q 048658 32 QIQLNLADFTRRAYGT-----NYVETLRVQVHANYRLRRIYFS 69 (83)
Q Consensus 32 ~i~~nL~~~t~~aygT-----~Y~et~rv~IhANCRlRRIYFs 69 (83)
+|+=.|+++ ++...- ..+...+|.|.+.-+.-+||++
T Consensus 14 ~i~~~ls~i-~~eikDprl~~~~vtVt~V~vs~Dl~~AkVyvs 55 (106)
T 2kzf_A 14 EIQKLLMEA-LQQLRDPRLKKDFVTFSRVELSKDKRYADVYVS 55 (106)
T ss_dssp HHHHHHHHH-HHTTCCSSCCGGGCCEEEEEECTTSCEEEEEEC
T ss_pred HHHHHHHHH-HHhccCccccCCceEEEEEEECCCCCEEEEEEE
Confidence 355566777 433221 3688889999999999999996
No 7
>1ybx_A Conserved hypothetical protein; ST genomics, PSI, protein structure initiative, southeast COLL for structural genomics, secsg; HET: MSE; 1.80A {Clostridium thermocellum}
Probab=15.39 E-value=1.4e+02 Score=20.30 Aligned_cols=26 Identities=8% Similarity=0.222 Sum_probs=22.7
Q ss_pred EEEEEEecceeeEEeeecccCCCccC
Q 048658 52 TLRVQVHANYRLRRIYFSDRLYSEEE 77 (83)
Q Consensus 52 t~rv~IhANCRlRRIYFsdrlYs~~e 77 (83)
.++|.+.++-.|++|-+.+.+..+++
T Consensus 77 lVkVtvnG~~ev~~I~Idp~lldpeD 102 (143)
T 1ybx_A 77 AVTVVATGRKDIKEITIKPEVVDPDD 102 (143)
T ss_dssp TEEEEEETTCCEEEEEECGGGCCTTC
T ss_pred EEEEEEecCceEEEEEECHHHcCCcC
Confidence 47899999999999999999997543
No 8
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max}
Probab=15.25 E-value=54 Score=28.53 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=17.6
Q ss_pred eEEeeecccCCCccCCCCCC
Q 048658 63 LRRIYFSDRLYSEEELTPEF 82 (83)
Q Consensus 63 lRRIYFsdrlYs~~eLP~ef 82 (83)
-.||||+++.|=..|.|+-.
T Consensus 165 ~~RifF~n~~ylp~~tp~~l 184 (864)
T 2iuk_A 165 KNRIFFVNDTYLPSATPAPL 184 (864)
T ss_dssp SCEEEEBSCCCCTTTSCGGG
T ss_pred CCceeccCCCcCcccCcHHH
Confidence 57999999999999999754
No 9
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=15.01 E-value=73 Score=20.72 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.3
Q ss_pred eeeEEEEEEecceeeEEeeecc
Q 048658 49 YVETLRVQVHANYRLRRIYFSD 70 (83)
Q Consensus 49 Y~et~rv~IhANCRlRRIYFsd 70 (83)
.+...+|.|.+.-+.-+||++-
T Consensus 43 ~vtVt~V~vS~Dl~~AkVyvs~ 64 (129)
T 2e7g_A 43 NVELSKVSLTPDFSACRAYWKT 64 (129)
T ss_dssp TCCEEEEEECTTSCCEEEEECC
T ss_pred eeEEEEEEECCCCcEEEEEEEe
Confidence 6888899999999999999984
No 10
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=13.93 E-value=2.3e+02 Score=19.66 Aligned_cols=55 Identities=29% Similarity=0.417 Sum_probs=36.5
Q ss_pred eccccCcccchhhccHHHHHHHHhCcceeeE---------EEEEEecceeeEEeeecc-cCCCccCC
Q 048658 22 MPLRLDDGWNQIQLNLADFTRRAYGTNYVET---------LRVQVHANYRLRRIYFSD-RLYSEEEL 78 (83)
Q Consensus 22 mPL~L~~gWn~i~~nL~~~t~~aygT~Y~et---------~rv~IhANCRlRRIYFsd-rlYs~~eL 78 (83)
+|++-.+-.+. -.+.+-.+..|.+.|.+. +.+.|..+-+|++|=|.. +.+++++|
T Consensus 30 l~~~~g~~~~~--~~i~~~i~~L~~~g~f~~v~v~~~~~~l~~~V~e~p~I~~i~~~Gn~~~~~~~l 94 (335)
T 2qdf_A 30 MPVRTGDTVND--EDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGNKSVKDDML 94 (335)
T ss_dssp SSCCTTCEECH--HHHHHHHHHHHTTSCEEEEEEEEETTEEEEEEEECCEEEEEEEESCCSSCHHHH
T ss_pred cCCCCCCccCH--HHHHHHHHHHHhCCCcceEEEEeCCCEEEEEEEeccEEEEEEEECCccCCHHHH
Confidence 44444443332 334444688889988864 445778888999998886 56776665
Done!