Query 048658
Match_columns 83
No_of_seqs 87 out of 89
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 20:33:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048658.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048658hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1josa_ d.52.7.1 (A:) Ribosome 32.0 32 0.0024 19.7 4.1 38 33-70 9-49 (100)
2 d1v0aa1 b.18.1.30 (A:4-170) En 21.8 4.1 0.0003 25.4 -1.7 25 23-47 103-127 (167)
3 d2vy4a1 g.37.1.7 (A:53-87) U11 21.5 2.6 0.00019 22.1 -2.3 9 59-67 24-32 (35)
4 d3bnea2 b.12.1.1 (A:7-149) Pla 20.4 18 0.0013 23.4 1.3 12 62-73 132-143 (143)
5 d2e7ga1 d.52.7.1 (A:86-201) Ri 18.7 34 0.0025 20.2 2.3 22 49-70 36-57 (116)
6 d1pkha_ b.85.4.1 (A:) Bifuncti 17.8 31 0.0023 21.2 2.0 21 55-75 153-179 (182)
7 d1j8ba_ d.222.1.1 (A:) Hypothe 16.2 53 0.0038 18.7 2.7 23 52-74 35-57 (92)
8 d1woqa1 c.55.1.10 (A:11-139) I 15.8 52 0.0038 18.3 2.6 22 25-48 86-107 (129)
9 d2dyja1 d.52.7.1 (A:4-94) Ribo 15.5 54 0.0039 18.6 2.6 23 48-70 26-48 (91)
10 d1bhia_ g.37.1.1 (A:) Transact 13.1 22 0.0016 18.6 0.2 10 15-24 4-13 (38)
No 1
>d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus influenzae [TaxId: 727]}
Probab=31.98 E-value=32 Score=19.73 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=27.2
Q ss_pred hhccHHHHHHHHhC---cceeeEEEEEEecceeeEEeeecc
Q 048658 33 IQLNLADFTRRAYG---TNYVETLRVQVHANYRLRRIYFSD 70 (83)
Q Consensus 33 i~~nL~~~t~~ayg---T~Y~et~rv~IhANCRlRRIYFsd 70 (83)
|+=-|+++..+... -..+..++|.+.+..+.-+||++-
T Consensus 9 i~~~is~il~~~i~d~~l~~vtIt~V~~S~Dl~~A~Vy~s~ 49 (100)
T d1josa_ 9 IQKEIAVILQREVKDPRIGMVTVSDVEVSSDLSYAKIFVTF 49 (100)
T ss_dssp HHHHHHHHHHHHCCCTTTCCEEEEEEEECTTSCEEEEEEEE
T ss_pred HHHHHHHHHHHhccCcccCceEEEEEEEcCCcceEEEEEEe
Confidence 34445555554332 246888899999999999999975
No 2
>d1v0aa1 b.18.1.30 (A:4-170) Endoglucanase H {Clostridium thermocellum [TaxId: 1515]}
Probab=21.78 E-value=4.1 Score=25.43 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=20.3
Q ss_pred ccccCcccchhhccHHHHHHHHhCc
Q 048658 23 PLRLDDGWNQIQLNLADFTRRAYGT 47 (83)
Q Consensus 23 PL~L~~gWn~i~~nL~~~t~~aygT 47 (83)
.....++|.+|.|+.++|.++.++.
T Consensus 103 ~f~~~~~W~~V~IPF~~F~~~~~~~ 127 (167)
T d1v0aa1 103 SITPDSSWKTIEIPFSSFRRRLDYQ 127 (167)
T ss_dssp EECCCSSCEEEEEEGGGCEECCSCC
T ss_pred EEecCCccEEEEEEHHHcccccccC
Confidence 4456789999999999999876644
No 3
>d2vy4a1 g.37.1.7 (A:53-87) U11/U12 small nuclear ribonucleoprotein 48 kDa protein, U11-48K {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.54 E-value=2.6 Score=22.06 Aligned_cols=9 Identities=44% Similarity=0.645 Sum_probs=6.3
Q ss_pred cceeeEEee
Q 048658 59 ANYRLRRIY 67 (83)
Q Consensus 59 ANCRlRRIY 67 (83)
|.||||++=
T Consensus 24 asCrLRklg 32 (35)
T d2vy4a1 24 ASCRLRKMG 32 (35)
T ss_dssp HHHHHHHCS
T ss_pred HHhhHhhcc
Confidence 678888753
No 4
>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine max), isozyme L1 [TaxId: 3847]}
Probab=20.45 E-value=18 Score=23.37 Aligned_cols=12 Identities=33% Similarity=0.827 Sum_probs=9.8
Q ss_pred eeEEeeecccCC
Q 048658 62 RLRRIYFSDRLY 73 (83)
Q Consensus 62 RlRRIYFsdrlY 73 (83)
+=.||||+++.|
T Consensus 132 ~~~RIFFsNk~Y 143 (143)
T d3bnea2 132 KSVRIFFANHTY 143 (143)
T ss_dssp SSCEEEECSCCC
T ss_pred CCCCEEecCCCC
Confidence 346999999887
No 5
>d2e7ga1 d.52.7.1 (A:86-201) Ribosome-binding factor A, RbfA {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.72 E-value=34 Score=20.23 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=20.1
Q ss_pred eeeEEEEEEecceeeEEeeecc
Q 048658 49 YVETLRVQVHANYRLRRIYFSD 70 (83)
Q Consensus 49 Y~et~rv~IhANCRlRRIYFsd 70 (83)
.++..+|.+.+.-+.-+|||+-
T Consensus 36 ~ItIt~V~vS~Dl~~AkVy~s~ 57 (116)
T d2e7ga1 36 NVELSKVSLTPDFSACRAYWKT 57 (116)
T ss_dssp TCCEEEEEECTTSCCEEEEECC
T ss_pred eEEEEEEEEcCCCcEEEEEEEe
Confidence 4888999999999999999975
No 6
>d1pkha_ b.85.4.1 (A:) Bifunctional dCTP deaminase/dUTPase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=17.80 E-value=31 Score=21.21 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=17.1
Q ss_pred EEEecceeeEEeee------cccCCCc
Q 048658 55 VQVHANYRLRRIYF------SDRLYSE 75 (83)
Q Consensus 55 v~IhANCRlRRIYF------sdrlYs~ 75 (83)
|.|++|.||-.+.| +++.|++
T Consensus 153 i~I~~g~ri~Ql~F~~~~~~~~~~Y~~ 179 (182)
T d1pkha_ 153 VILYKNQRIGQLIFSKLLSPADVGYSE 179 (182)
T ss_dssp EEEETTCEEEEEEEEECSSCCCCSEEE
T ss_pred EEEcCCCEEEEEEEEECCCcccCCcCc
Confidence 89999999999999 4455554
No 7
>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus influenzae [TaxId: 727]}
Probab=16.23 E-value=53 Score=18.74 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.5
Q ss_pred EEEEEEecceeeEEeeecccCCC
Q 048658 52 TLRVQVHANYRLRRIYFSDRLYS 74 (83)
Q Consensus 52 t~rv~IhANCRlRRIYFsdrlYs 74 (83)
.++|.+..+-.|.+|-+.+.+..
T Consensus 35 ~V~V~~~G~~~v~~i~Id~~~l~ 57 (92)
T d1j8ba_ 35 LVKITINGAHNCRRIDIDPSLME 57 (92)
T ss_dssp TEEEEEETTCCEEEEEECGGGGG
T ss_pred EEEEEEECCeEEEEEEECHHHhc
Confidence 36799999999999999998885
No 8
>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}
Probab=15.84 E-value=52 Score=18.28 Aligned_cols=22 Identities=14% Similarity=0.418 Sum_probs=17.1
Q ss_pred ccCcccchhhccHHHHHHHHhCcc
Q 048658 25 RLDDGWNQIQLNLADFTRRAYGTN 48 (83)
Q Consensus 25 ~L~~gWn~i~~nL~~~t~~aygT~ 48 (83)
.+..+|+. +||.+..++.||-.
T Consensus 86 ~~~~~w~~--~~l~~~l~~~~~~p 107 (129)
T d1woqa1 86 NVDKSWLN--TDIDALLTARLGRP 107 (129)
T ss_dssp TSCGGGTT--CBHHHHHHHHHTSC
T ss_pred ccCCCccc--ccchhhHHHhcCCc
Confidence 34568985 89999999999843
No 9
>d2dyja1 d.52.7.1 (A:4-94) Ribosome-binding factor A, RbfA {Thermus thermophilus [TaxId: 274]}
Probab=15.54 E-value=54 Score=18.56 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=20.4
Q ss_pred ceeeEEEEEEecceeeEEeeecc
Q 048658 48 NYVETLRVQVHANYRLRRIYFSD 70 (83)
Q Consensus 48 ~Y~et~rv~IhANCRlRRIYFsd 70 (83)
..+...+|.+.+..+.-+||++-
T Consensus 26 ~~vtIt~V~~S~Dl~~akVyvs~ 48 (91)
T d2dyja1 26 FLLTVEAVRLSKDGSVLSVYVEA 48 (91)
T ss_dssp TTCEEEEEEECTTSSEEEEEEEC
T ss_pred CceEEEEEEECCCcccEEEEEEe
Confidence 35778899999999999999984
No 10
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.13 E-value=22 Score=18.56 Aligned_cols=10 Identities=50% Similarity=1.075 Sum_probs=7.6
Q ss_pred eeeeEEeecc
Q 048658 15 VKPYICTMPL 24 (83)
Q Consensus 15 V~p~~c~mPL 24 (83)
-|||.|+.|=
T Consensus 4 dkPF~C~~pG 13 (38)
T d1bhia_ 4 DKPFLCTAPG 13 (38)
T ss_dssp CCCEECCCTT
T ss_pred CCceecCCCC
Confidence 3789998873
Done!