Query 048659
Match_columns 146
No_of_seqs 142 out of 267
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 11:45:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4595 Uncharacterized conser 100.0 8E-35 1.7E-39 216.8 14.9 138 9-146 2-139 (139)
2 PF09811 Yae1_N: Essential pro 99.2 1.8E-11 4E-16 73.7 4.2 39 31-69 1-39 (39)
3 KOG4595 Uncharacterized conser 98.9 2.8E-08 6E-13 74.7 10.2 101 27-129 16-118 (139)
4 PRK13386 fliH flagellar assemb 98.7 1.4E-07 3E-12 76.7 10.5 38 29-66 45-82 (236)
5 PRK13386 fliH flagellar assemb 98.6 5.7E-07 1.2E-11 73.1 9.8 50 25-74 45-94 (236)
6 PRK05687 fliH flagellar assemb 98.5 4.9E-07 1.1E-11 73.3 9.1 48 17-64 58-105 (246)
7 PRK05687 fliH flagellar assemb 98.5 1.4E-06 3E-11 70.6 11.1 51 20-70 53-103 (246)
8 KOG4774 Uncharacterized conser 98.3 6.9E-06 1.5E-10 64.1 9.4 109 19-130 33-144 (190)
9 PF09811 Yae1_N: Essential pro 98.1 1.1E-05 2.3E-10 48.5 5.3 37 28-64 2-38 (39)
10 COG1317 FliH Flagellar biosynt 97.6 0.0009 2E-08 54.5 10.9 51 24-77 52-102 (234)
11 KOG4774 Uncharacterized conser 97.0 0.0046 9.9E-08 48.5 8.0 83 26-129 35-118 (190)
12 COG1317 FliH Flagellar biosynt 96.8 0.011 2.3E-07 48.2 8.8 39 21-59 53-91 (234)
13 PRK09956 hypothetical protein; 95.4 0.049 1.1E-06 45.9 6.5 28 20-47 243-270 (308)
14 PRK06937 type III secretion sy 90.7 6.8 0.00015 30.8 12.7 12 91-102 117-128 (204)
15 PF06635 NolV: Nodulation prot 89.3 6.4 0.00014 31.8 10.1 30 29-58 47-76 (207)
16 TIGR03825 FliH_bacil flagellar 87.5 1.9 4.2E-05 35.1 6.2 23 35-57 85-107 (255)
17 PRK09956 hypothetical protein; 86.5 2.2 4.9E-05 35.9 6.2 18 60-77 267-284 (308)
18 PRK09098 type III secretion sy 82.3 25 0.00055 28.5 12.3 22 28-49 74-95 (233)
19 COG5464 Uncharacterized conser 80.6 3.2 7E-05 35.0 4.8 32 24-55 213-246 (289)
20 TIGR03825 FliH_bacil flagellar 79.8 8.1 0.00018 31.4 6.8 13 118-130 190-202 (255)
21 PRK06937 type III secretion sy 74.6 12 0.00026 29.3 6.3 6 17-22 26-31 (204)
22 TIGR02499 HrpE_YscL_not type I 70.8 40 0.00086 24.9 11.7 12 91-102 100-111 (166)
23 COG1561 Uncharacterized stress 62.4 85 0.0018 26.7 9.1 85 38-129 138-235 (290)
24 PRK06328 type III secretion sy 62.3 81 0.0018 25.3 10.9 9 15-23 23-31 (223)
25 PF05600 DUF773: Protein of un 61.3 20 0.00043 32.5 5.5 70 61-133 85-172 (507)
26 TIGR01784 T_den_put_tspse cons 61.2 28 0.00061 27.5 5.9 13 64-76 235-247 (270)
27 PF12776 Myb_DNA-bind_3: Myb/S 60.9 27 0.00058 23.4 5.0 40 94-133 37-76 (96)
28 PF07438 DUF1514: Protein of u 60.4 19 0.00041 24.0 3.9 39 85-123 21-65 (66)
29 PF12432 DUF3677: Protein of u 57.7 46 0.001 22.8 5.7 49 67-124 20-69 (83)
30 PRK06032 fliH flagellar assemb 56.0 96 0.0021 24.2 11.8 22 20-41 33-54 (199)
31 PF08429 PLU-1: PLU-1-like pro 56.0 1E+02 0.0022 25.6 8.6 118 10-130 146-274 (335)
32 COG5464 Uncharacterized conser 53.1 19 0.0004 30.5 3.7 31 29-59 214-246 (289)
33 TIGR02499 HrpE_YscL_not type I 48.1 1.1E+02 0.0024 22.5 9.9 16 85-100 97-112 (166)
34 PF10911 DUF2717: Protein of u 47.1 22 0.00047 24.4 2.6 21 40-60 45-65 (77)
35 PF00486 Trans_reg_C: Transcri 45.7 54 0.0012 20.7 4.4 33 92-125 28-60 (77)
36 PF07568 HisKA_2: Histidine ki 45.5 69 0.0015 21.2 4.9 42 85-127 4-45 (76)
37 PF06569 DUF1128: Protein of u 43.4 43 0.00094 22.6 3.6 33 104-136 2-34 (71)
38 PF10805 DUF2730: Protein of u 41.7 57 0.0012 23.2 4.3 40 88-128 48-87 (106)
39 PF14559 TPR_19: Tetratricopep 41.1 59 0.0013 19.7 3.9 58 61-118 3-68 (68)
40 PHA00438 hypothetical protein 39.0 32 0.00068 23.8 2.4 21 40-60 45-65 (81)
41 COG4105 ComL DNA uptake lipopr 38.1 99 0.0021 25.8 5.7 54 65-122 113-166 (254)
42 PRK11443 lipoprotein; Provisio 36.9 12 0.00025 27.8 0.0 16 55-70 83-98 (124)
43 PRK10866 outer membrane biogen 36.5 1.2E+02 0.0026 24.3 5.9 35 87-122 140-174 (243)
44 PF13174 TPR_6: Tetratricopept 36.2 54 0.0012 16.8 2.7 19 86-104 15-33 (33)
45 PRK06328 type III secretion sy 33.7 2.5E+02 0.0054 22.5 9.9 6 105-110 139-144 (223)
46 PF01417 ENTH: ENTH domain; I 33.6 66 0.0014 23.0 3.6 13 118-130 108-120 (125)
47 PRK09098 type III secretion sy 31.9 1.8E+02 0.004 23.5 6.3 13 118-130 165-177 (233)
48 KOG1510 RNA polymerase II holo 31.5 1.1E+02 0.0023 23.3 4.4 24 85-108 63-86 (139)
49 PLN03075 nicotianamine synthas 31.0 2.7E+02 0.0059 23.5 7.4 42 84-127 31-72 (296)
50 PF06635 NolV: Nodulation prot 30.8 2.9E+02 0.0063 22.4 11.1 28 21-48 47-74 (207)
51 PRK00347 putative DNA-binding 29.9 86 0.0019 25.5 4.1 42 80-121 149-207 (234)
52 PRK13452 atpC F0F1 ATP synthas 29.5 1.6E+02 0.0036 22.0 5.3 47 85-131 93-139 (145)
53 PF12063 DUF3543: Domain of un 29.2 2E+02 0.0044 23.4 6.1 68 56-127 162-235 (238)
54 PF08656 DASH_Dad3: DASH compl 28.3 2E+02 0.0043 19.7 5.2 46 85-130 13-58 (78)
55 TIGR02507 MtrF tetrahydrometha 27.3 1.1E+02 0.0023 20.4 3.4 31 101-131 2-33 (65)
56 KOG1087 Cytosolic sorting prot 26.8 2.2E+02 0.0048 25.8 6.4 43 87-129 200-245 (470)
57 PF04402 SIMPL: Protein of unk 26.3 92 0.002 23.5 3.5 24 109-132 128-151 (210)
58 PF05315 ICEA: ICEA Protein; 25.6 51 0.0011 26.9 1.9 17 44-60 209-225 (230)
59 PF09472 MtrF: Tetrahydrometha 25.3 1.1E+02 0.0024 20.2 3.2 31 101-131 2-33 (64)
60 PF12308 Noelin-1: Neurogenesi 25.2 1.3E+02 0.0029 21.6 3.8 19 109-127 71-89 (101)
61 cd07667 BAR_SNX30 The Bin/Amph 24.9 3.6E+02 0.0077 22.2 6.8 16 62-77 224-239 (240)
62 PRK15322 invasion protein OrgB 24.7 3.8E+02 0.0083 21.8 9.9 38 21-59 15-55 (210)
63 KOG1490 GTP-binding protein CR 24.1 2.7E+02 0.0059 26.0 6.4 40 54-107 36-75 (620)
64 PRK13275 mtrF tetrahydromethan 23.9 1.3E+02 0.0028 20.1 3.3 31 101-131 2-33 (67)
65 PF10428 SOG2: RAM signalling 23.6 1.8E+02 0.0038 25.9 5.2 46 87-132 65-117 (445)
66 KOG4128 Bleomycin hydrolases a 23.4 2.2E+02 0.0048 25.2 5.5 23 109-134 208-230 (457)
67 PF11221 Med21: Subunit 21 of 23.3 3.1E+02 0.0068 20.3 6.2 22 87-108 78-99 (144)
68 KOG2607 CDK5 activator-binding 22.8 99 0.0022 27.9 3.4 71 61-134 83-171 (505)
69 PF13525 YfiO: Outer membrane 22.7 3.5E+02 0.0077 20.6 7.9 38 84-122 103-140 (203)
70 PF09058 L27_1: L27_1; InterP 22.4 2.4E+02 0.0053 18.6 5.2 49 86-136 7-57 (64)
71 PHA02599 dsbA double-stranded 22.3 97 0.0021 21.9 2.6 37 90-126 16-52 (91)
72 TIGR00230 sfsA sugar fermentat 22.0 91 0.002 25.4 2.8 42 80-121 148-205 (232)
73 KOG0121 Nuclear cap-binding pr 22.0 29 0.00062 26.5 -0.1 13 40-52 112-124 (153)
74 PF04210 MtrG: Tetrahydrometha 21.3 2.7E+02 0.0059 18.8 5.4 16 36-51 37-52 (70)
75 PF05596 Taeniidae_ag: Taeniid 21.1 1.9E+02 0.0041 19.0 3.7 42 85-126 10-54 (64)
76 smart00862 Trans_reg_C Transcr 21.1 2.2E+02 0.0047 17.7 4.0 33 92-124 28-60 (78)
77 PRK15322 invasion protein OrgB 20.9 1.7E+02 0.0037 23.7 4.1 10 26-35 42-51 (210)
78 cd03571 ENTH_epsin ENTH domain 20.9 1.7E+02 0.0037 21.4 3.9 40 87-130 78-117 (123)
79 PF03051 Peptidase_C1_2: Pepti 20.7 1.5E+02 0.0033 26.4 4.2 45 86-134 176-221 (438)
80 PF03749 SfsA: Sugar fermentat 20.7 96 0.0021 24.9 2.7 42 80-121 135-193 (215)
81 PRK01026 tetrahydromethanopter 20.5 3E+02 0.0064 18.9 5.6 18 45-62 45-62 (77)
82 PF08657 DASH_Spc34: DASH comp 20.4 2.3E+02 0.005 23.5 4.9 36 88-128 160-195 (259)
83 PRK11087 oxidative stress defe 20.3 1.2E+02 0.0026 24.2 3.2 24 109-132 152-175 (231)
No 1
>KOG4595 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8e-35 Score=216.76 Aligned_cols=138 Identities=31% Similarity=0.526 Sum_probs=131.7
Q ss_pred CCCCchhHhHHhHhHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhCCCCCCHHHH
Q 048659 9 NSNSIEDIFDSSLNLEQTHLKEGYDEGYAHGLATGKEEAKDVGLKHGFETGEELGFYKGCVDVWNSAIRIAPTRFSARVR 88 (146)
Q Consensus 9 ~~~d~dD~fD~il~lEe~~~~eGy~eG~~~G~~~G~~EG~~~G~~~G~q~g~e~G~~~G~~~~w~~~~~~~~~~~s~r~~ 88 (146)
++-+++|+||+|++|||++|++||++|+++|..+|+.|||++|+++||++|.++|+|+||+-+|++.+++++..++.|..
T Consensus 2 ~sg~~~d~fD~Iv~lEE~~~q~Gy~EG~~eGi~qG~eEg~~~Gl~~G~~~g~llG~~~Gc~~l~~~~lhs~~~~ks~~~l 81 (139)
T KOG4595|consen 2 PSGDINDDFDDIVLLEEKEYQEGYDEGYEEGIEQGNEEGRQLGLAHGFSLGELLGKILGCVVLWQQLLHSPKTRKSLRQL 81 (139)
T ss_pred CcchhHhHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccCCchhcCHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCCCCCC
Q 048659 89 KGIKQMEELIEKYPVNDPENESVQEIMGALRLKFRIIRAALGVKLEYDGYPKPIEIEF 146 (146)
Q Consensus 89 k~i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kfr~i~~~lg~~~~~~~~p~~~~l~f 146 (146)
+++..+..|++.+|..+|.++.+....+|||.|+|.+|+++|+++..+...+.+..+|
T Consensus 82 r~L~~~l~~l~~~~~~~~~d~~~~~~~nkir~~~~~~~~l~~~k~~~t~s~e~~d~~~ 139 (139)
T KOG4595|consen 82 RSLISLLPMLNDPPALDETDVQLIRSKNKIRRKLKGSKSLLGAKPAPTNSVEHKDYSF 139 (139)
T ss_pred HHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHhcccCccCcccccccccccC
Confidence 9999999999999999999999999999999999999999999999987777777665
No 2
>PF09811 Yae1_N: Essential protein Yae1, N terminal; InterPro: IPR019191 This entry represents proteins found in the N-terminal region of the essential protein Yae1. The exact function has not been determined.
Probab=99.21 E-value=1.8e-11 Score=73.72 Aligned_cols=39 Identities=46% Similarity=0.854 Sum_probs=37.6
Q ss_pred HHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 048659 31 GYDEGYAHGLATGKEEAKDVGLKHGFETGEELGFYKGCV 69 (146)
Q Consensus 31 Gy~eG~~~G~~~G~~EG~~~G~~~G~q~g~e~G~~~G~~ 69 (146)
||++|+.+|+++|++||+++||++|++++.++|+++|++
T Consensus 1 GY~eG~~~G~~~glqeGf~~G~~~G~~~g~~~G~~~G~~ 39 (39)
T PF09811_consen 1 GYREGLEDGKEEGLQEGFDEGYQEGFQLGFEVGFYKGFA 39 (39)
T ss_pred ChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 799999999999999999999999999999999999975
No 3
>KOG4595 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=2.8e-08 Score=74.67 Aligned_cols=101 Identities=22% Similarity=0.291 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHHhhCCCCCC
Q 048659 27 HLKEGYDEGYAHGLATGKEEAKDVGLKHGFETGEELGFYKGCVDVWNSAIRIAPTRFSARVRKGIKQMEELIEKYPVNDP 106 (146)
Q Consensus 27 ~~~eGy~eG~~~G~~~G~~EG~~~G~~~G~q~g~e~G~~~G~~~~w~~~~~~~~~~~s~r~~k~i~~L~~Li~~~p~~n~ 106 (146)
.-+.=|++|+.+|...|...|+.-|++.|.+.|...|-.-|+..- +.+.......+++.+|.+.+++.|++-+|+.|+
T Consensus 16 lEE~~~q~Gy~EG~~eGi~qG~eEg~~~Gl~~G~~~g~llG~~~G--c~~l~~~~lhs~~~~ks~~~lr~L~~~l~~l~~ 93 (139)
T KOG4595|consen 16 LEEKEYQEGYDEGYEEGIEQGNEEGRQLGLAHGFSLGELLGKILG--CVVLWQQLLHSPKTRKSLRQLRSLISLLPMLND 93 (139)
T ss_pred HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHhccCCchhcCHHHHHHHHHHHhccCC
Confidence 445667788888777777777777777777777777777888877 444444445678899999999999999998754
Q ss_pred C--hhhHHHHHHHHHHHHHHHHHHh
Q 048659 107 E--NESVQEIMGALRLKFRIIRAAL 129 (146)
Q Consensus 107 ~--~~~~~~~l~kiR~Kfr~i~~~l 129 (146)
. ++..+..+.++.+|+|.....+
T Consensus 94 ~~~~~~~d~~~~~~~nkir~~~~~~ 118 (139)
T KOG4595|consen 94 PPALDETDVQLIRSKNKIRRKLKGS 118 (139)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHH
Confidence 4 4556777777888888765544
No 4
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=98.72 E-value=1.4e-07 Score=76.71 Aligned_cols=38 Identities=32% Similarity=0.559 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhhhh
Q 048659 29 KEGYDEGYAHGLATGKEEAKDVGLKHGFETGEELGFYK 66 (146)
Q Consensus 29 ~eGy~eG~~~G~~~G~~EG~~~G~~~G~q~g~e~G~~~ 66 (146)
++||++|+++|..+|+.+|+..|++.|++.|.+.|+.+
T Consensus 45 ~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~ 82 (236)
T PRK13386 45 MAGFQEGIQQGFDQGLEEGEEEGRQEGHAAGFAQGRQK 82 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444443
No 5
>PRK13386 fliH flagellar assembly protein H; Provisional
Probab=98.56 E-value=5.7e-07 Score=73.08 Aligned_cols=50 Identities=28% Similarity=0.584 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 048659 25 QTHLKEGYDEGYAHGLATGKEEAKDVGLKHGFETGEELGFYKGCVDVWNS 74 (146)
Q Consensus 25 e~~~~eGy~eG~~~G~~~G~~EG~~~G~~~G~q~g~e~G~~~G~~~~w~~ 74 (146)
++-|++||++|+++|.++|+.+|++.|++.|++.|.+.|+-.|...++..
T Consensus 45 ~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~G~~~g~~~~~qq 94 (236)
T PRK13386 45 MAGFQEGIQQGFDQGLEEGEEEGRQEGHAAGFAQGRQKGRIEGRQSIRQQ 94 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666666655544
No 6
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=98.55 E-value=4.9e-07 Score=73.25 Aligned_cols=48 Identities=31% Similarity=0.427 Sum_probs=30.4
Q ss_pred hHHhHhHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 048659 17 FDSSLNLEQTHLKEGYDEGYAHGLATGKEEAKDVGLKHGFETGEELGF 64 (146)
Q Consensus 17 fD~il~lEe~~~~eGy~eG~~~G~~~G~~EG~~~G~~~G~q~g~e~G~ 64 (146)
.+.+-.+.++.|++||++|+++|+++||.+|++.|++.|++.|.+.|.
T Consensus 58 ~~~~e~~~~~a~~eG~~~G~~~G~~~G~~~G~~~G~~~G~~qg~~e~~ 105 (246)
T PRK05687 58 EEELEAIRQQAHEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEGQ 105 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666667766666666666666666666666666655544
No 7
>PRK05687 fliH flagellar assembly protein H; Validated
Probab=98.52 E-value=1.4e-06 Score=70.63 Aligned_cols=51 Identities=24% Similarity=0.451 Sum_probs=30.2
Q ss_pred hHhHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 048659 20 SLNLEQTHLKEGYDEGYAHGLATGKEEAKDVGLKHGFETGEELGFYKGCVD 70 (146)
Q Consensus 20 il~lEe~~~~eGy~eG~~~G~~~G~~EG~~~G~~~G~q~g~e~G~~~G~~~ 70 (146)
+..+-...+++++++|+++|..+||.+|++.||+.|++.|.+.|+-+|+..
T Consensus 53 ~~~~~~~~~e~~~~~a~~eG~~~G~~~G~~~G~~~G~~~G~~~G~~qg~~e 103 (246)
T PRK05687 53 AAPLTEEELEAIRQQAHEEGFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAE 103 (246)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666666666666666666666666666666544
No 8
>KOG4774 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=6.9e-06 Score=64.07 Aligned_cols=109 Identities=20% Similarity=0.253 Sum_probs=72.7
Q ss_pred HhHhHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhCCCCCCHH-H--HHHHHHHH
Q 048659 19 SSLNLEQTHLKEGYDEGYAHGLATGKEEAKDVGLKHGFETGEELGFYKGCVDVWNSAIRIAPTRFSAR-V--RKGIKQME 95 (146)
Q Consensus 19 ~il~lEe~~~~eGy~eG~~~G~~~G~~EG~~~G~~~G~q~g~e~G~~~G~~~~w~~~~~~~~~~~s~r-~--~k~i~~L~ 95 (146)
++..+++..-.+||.+|+-.|..+-.+||+.+||.+|...|.+.|...|...+..++........++. + ++..+.-.
T Consensus 33 elq~l~e~HSk~GYrDGIvagKe~~lQeGFNdGyk~ga~lG~Q~G~~rGtLsall~~f~dEne~~~k~~IlkQe~~r~~e 112 (190)
T KOG4774|consen 33 ELQSLMERHSKEGYRDGIVAGKEVTLQEGFNDGYKKGAELGLQYGRLRGTLSALLSWFHDENENINKINILKQEVGRCEE 112 (190)
T ss_pred HHHHHHHHhhhcchhhhhhhhHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999998887777654222111111 1 11112222
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHHHHHHHHHHHhC
Q 048659 96 ELIEKYPVNDPENESVQEIMGALRLKFRIIRAALG 130 (146)
Q Consensus 96 ~Li~~~p~~n~~~~~~~~~l~kiR~Kfr~i~~~lg 130 (146)
.|...+-.-||+. .+.+.++-|+- +..|...+
T Consensus 113 ~l~khif~~n~~~-h~~e~l~~It~--k~~~~~~~ 144 (190)
T KOG4774|consen 113 YLLKHIFSINPPS-HVVELLDSITD--KDLCHVVP 144 (190)
T ss_pred HHHHHhhcCCcHH-HHHHHHHHHHh--hhcccccc
Confidence 3333444445543 45566666663 34454444
No 9
>PF09811 Yae1_N: Essential protein Yae1, N terminal; InterPro: IPR019191 This entry represents proteins found in the N-terminal region of the essential protein Yae1. The exact function has not been determined.
Probab=98.09 E-value=1.1e-05 Score=48.48 Aligned_cols=37 Identities=38% Similarity=0.698 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 048659 28 LKEGYDEGYAHGLATGKEEAKDVGLKHGFETGEELGF 64 (146)
Q Consensus 28 ~~eGy~eG~~~G~~~G~~EG~~~G~~~G~q~g~e~G~ 64 (146)
|++|+.+|.++|.++|+.+|++.|++.|++.|...|+
T Consensus 2 Y~eG~~~G~~~glqeGf~~G~~~G~~~g~~~G~~~G~ 38 (39)
T PF09811_consen 2 YREGLEDGKEEGLQEGFDEGYQEGFQLGFEVGFYKGF 38 (39)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6788888888888888888888888888888888775
No 10
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.62 E-value=0.0009 Score=54.47 Aligned_cols=51 Identities=29% Similarity=0.457 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhh
Q 048659 24 EQTHLKEGYDEGYAHGLATGKEEAKDVGLKHGFETGEELGFYKGCVDVWNSAIR 77 (146)
Q Consensus 24 Ee~~~~eGy~eG~~~G~~~G~~EG~~~G~~~G~q~g~e~G~~~G~~~~w~~~~~ 77 (146)
+-....+++++++++|.++||.+|++.|++.||+.|.+.|+ +...|..++.
T Consensus 52 ~~~~~~~~~~~~i~~~~~e~~eeg~q~G~~eG~~~g~~~~~---~~e~~~~li~ 102 (234)
T COG1317 52 ELESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEGR---VLERLAKLIA 102 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 34556677778888888888888888888888888888876 5566666553
No 11
>KOG4774 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.0046 Score=48.49 Aligned_cols=83 Identities=20% Similarity=0.368 Sum_probs=58.1
Q ss_pred HHHHHHH-HHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHHhhCCCC
Q 048659 26 THLKEGY-DEGYAHGLATGKEEAKDVGLKHGFETGEELGFYKGCVDVWNSAIRIAPTRFSARVRKGIKQMEELIEKYPVN 104 (146)
Q Consensus 26 ~~~~eGy-~eG~~~G~~~G~~EG~~~G~~~G~q~g~e~G~~~G~~~~w~~~~~~~~~~~s~r~~k~i~~L~~Li~~~p~~ 104 (146)
+-..+-+ ++||.+|.-+|..+-.|.||-.||..|.++|+..|+.. -.|.+++.-||..
T Consensus 35 q~l~e~HSk~GYrDGIvagKe~~lQeGFNdGyk~ga~lG~Q~G~~r---------------------GtLsall~~f~dE 93 (190)
T KOG4774|consen 35 QSLMERHSKEGYRDGIVAGKEVTLQEGFNDGYKKGAELGLQYGRLR---------------------GTLSALLSWFHDE 93 (190)
T ss_pred HHHHHHhhhcchhhhhhhhHHHHHHHhhhccchHHHHHHHHHHHHH---------------------HHHHHHHHHcccc
Confidence 3334444 48999999999999999999999999999999999765 3355666667766
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHh
Q 048659 105 DPENESVQEIMGALRLKFRIIRAAL 129 (146)
Q Consensus 105 n~~~~~~~~~l~kiR~Kfr~i~~~l 129 (146)
|..-..+.-..+..+-+++.+...+
T Consensus 94 ne~~~k~~IlkQe~~r~~e~l~khi 118 (190)
T KOG4774|consen 94 NENINKINILKQEVGRCEEYLLKHI 118 (190)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHh
Confidence 5543344444444555555444433
No 12
>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.77 E-value=0.011 Score=48.20 Aligned_cols=39 Identities=31% Similarity=0.520 Sum_probs=28.5
Q ss_pred HhHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHH
Q 048659 21 LNLEQTHLKEGYDEGYAHGLATGKEEAKDVGLKHGFETG 59 (146)
Q Consensus 21 l~lEe~~~~eGy~eG~~~G~~~G~~EG~~~G~~~G~q~g 59 (146)
+....+-.+++|.+|.++|.++|+..|+..||++|.+.|
T Consensus 53 ~~~~~~~~~~~i~~~~~e~~eeg~q~G~~eG~~~g~~~~ 91 (234)
T COG1317 53 LESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEG 91 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777777777777776555
No 13
>PRK09956 hypothetical protein; Provisional
Probab=95.41 E-value=0.049 Score=45.91 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=14.3
Q ss_pred hHhHHHHHHHHHHHHHHHhHHHhhHHHH
Q 048659 20 SLNLEQTHLKEGYDEGYAHGLATGKEEA 47 (146)
Q Consensus 20 il~lEe~~~~eGy~eG~~~G~~~G~~EG 47 (146)
+..+.++..++|.++|.++|+++|.++|
T Consensus 243 iMTiAe~l~qeG~e~G~q~G~~eG~qeG 270 (308)
T PRK09956 243 LMTIAERLRQEGHQIGWQEGKLEGLQEG 270 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666665555555544443333
No 14
>PRK06937 type III secretion system protein; Reviewed
Probab=90.74 E-value=6.8 Score=30.77 Aligned_cols=12 Identities=8% Similarity=0.202 Sum_probs=6.3
Q ss_pred HHHHHHHHhhCC
Q 048659 91 IKQMEELIEKYP 102 (146)
Q Consensus 91 i~~L~~Li~~~p 102 (146)
+..+.+.+..+|
T Consensus 117 ~~lv~~al~~l~ 128 (204)
T PRK06937 117 LQVVREALALVS 128 (204)
T ss_pred HHHHHHHHHhcc
Confidence 344555555555
No 15
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=89.32 E-value=6.4 Score=31.79 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=17.9
Q ss_pred HHHHHHHHHhHHHhhHHHHHHHHHHHHHHH
Q 048659 29 KEGYDEGYAHGLATGKEEAKDVGLKHGFET 58 (146)
Q Consensus 29 ~eGy~eG~~~G~~~G~~EG~~~G~~~G~q~ 58 (146)
.+.-+..+++.++.||.||++.|.++-.++
T Consensus 47 r~~Ar~ayE~~rarGyeeG~~~g~e~~A~l 76 (207)
T PF06635_consen 47 REWARAAYERERARGYEEGRRAGAEQAARL 76 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 333455566666666666666666655554
No 16
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=87.46 E-value=1.9 Score=35.09 Aligned_cols=23 Identities=13% Similarity=0.097 Sum_probs=10.7
Q ss_pred HHHhHHHhhHHHHHHHHHHHHHH
Q 048659 35 GYAHGLATGKEEAKDVGLKHGFE 57 (146)
Q Consensus 35 G~~~G~~~G~~EG~~~G~~~G~q 57 (146)
.++++++.||.+|++.|++.|.+
T Consensus 85 ~~e~A~~eGy~eG~~~G~~e~~~ 107 (255)
T TIGR03825 85 LIQEAKQEGYEAGFQAGESEALS 107 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 17
>PRK09956 hypothetical protein; Provisional
Probab=86.46 E-value=2.2 Score=35.91 Aligned_cols=18 Identities=6% Similarity=0.099 Sum_probs=8.2
Q ss_pred HHhhhhhHHHHHHHHhhh
Q 048659 60 EELGFYKGCVDVWNSAIR 77 (146)
Q Consensus 60 ~e~G~~~G~~~~w~~~~~ 77 (146)
.+.|..++...+-+.++.
T Consensus 267 ~qeG~~e~~~eiA~~mL~ 284 (308)
T PRK09956 267 LQEGMHEQAIKIALRMLE 284 (308)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444455455543
No 18
>PRK09098 type III secretion system protein HrpB; Validated
Probab=82.28 E-value=25 Score=28.52 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhHHHhhHHHHHH
Q 048659 28 LKEGYDEGYAHGLATGKEEAKD 49 (146)
Q Consensus 28 ~~eGy~eG~~~G~~~G~~EG~~ 49 (146)
|++.+++||.+|..+++.|...
T Consensus 74 ~e~~~~~Gy~eG~~~a~~e~~~ 95 (233)
T PRK09098 74 ADRSARRGYAAGLRQALAEWHA 95 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555554444444333
No 19
>COG5464 Uncharacterized conserved protein [Function unknown]
Probab=80.64 E-value=3.2 Score=35.02 Aligned_cols=32 Identities=28% Similarity=0.327 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhHHHhhHHHHH--HHHHHHH
Q 048659 24 EQTHLKEGYDEGYAHGLATGKEEAK--DVGLKHG 55 (146)
Q Consensus 24 Ee~~~~eGy~eG~~~G~~~G~~EG~--~~G~~~G 55 (146)
+..+|++.-++|-++|.+.|..||+ +-|.++|
T Consensus 213 ~t~~yqEi~eeg~~~Ge~~g~~egr~~~eG~~eg 246 (289)
T COG5464 213 ETRFYQEIAEEGPQHGEALMTIAGRLEQEGKQEG 246 (289)
T ss_pred hhHHHHHHHHHhhhhhhHHhhHhhHHHHHHHHhh
Confidence 5678888888888888888888888 6666665
No 20
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=79.79 E-value=8.1 Score=31.45 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhC
Q 048659 118 LRLKFRIIRAALG 130 (146)
Q Consensus 118 iR~Kfr~i~~~lg 130 (146)
++.+.-.+.+.++
T Consensus 190 v~~~~~~l~~~~~ 202 (255)
T TIGR03825 190 VAAQKDELQSILP 202 (255)
T ss_pred HHHhHHHHHhhcC
Confidence 3334444455554
No 21
>PRK06937 type III secretion system protein; Reviewed
Probab=74.63 E-value=12 Score=29.33 Aligned_cols=6 Identities=33% Similarity=0.611 Sum_probs=2.5
Q ss_pred hHHhHh
Q 048659 17 FDSSLN 22 (146)
Q Consensus 17 fD~il~ 22 (146)
|..++.
T Consensus 26 ~~~~~~ 31 (204)
T PRK06937 26 YQSLLS 31 (204)
T ss_pred HHHHhh
Confidence 444433
No 22
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=70.81 E-value=40 Score=24.89 Aligned_cols=12 Identities=8% Similarity=0.420 Sum_probs=6.0
Q ss_pred HHHHHHHHhhCC
Q 048659 91 IKQMEELIEKYP 102 (146)
Q Consensus 91 i~~L~~Li~~~p 102 (146)
+..+..++..++
T Consensus 100 ~~lv~~al~~~~ 111 (166)
T TIGR02499 100 VRLLRQLLRAVA 111 (166)
T ss_pred HHHHHHHHHhCC
Confidence 444455555555
No 23
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=62.45 E-value=85 Score=26.68 Aligned_cols=85 Identities=11% Similarity=0.106 Sum_probs=50.0
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHHhhCCCC-CCCh-------
Q 048659 38 HGLATGKEEAKDVGLKHGFETGEELGFY-KGCVDVWNSAIRIAPTRFSARVRKGIKQMEELIEKYPVN-DPEN------- 108 (146)
Q Consensus 38 ~G~~~G~~EG~~~G~~~G~q~g~e~G~~-~G~~~~w~~~~~~~~~~~s~r~~k~i~~L~~Li~~~p~~-n~~~------- 108 (146)
+..-.++.++|. .-|..++-+ .+......+.+..-....+.-+....+.+.+.|...... ||+.
T Consensus 138 ~~AL~~l~~~R~-------~EG~~L~~~l~~~L~~ie~~v~~v~~~~P~~~~~~~~~l~~ri~~~~~~~d~~rl~qE~al 210 (290)
T COG1561 138 EEALDDLIEMRE-------REGAALKADLLQRLDAIEELVEKVESLMPEILEWYRERLVARLNEAQDQLDEDRLEQEVAL 210 (290)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhcccChHHHHHHHHH
Confidence 344455777776 344444443 666666666553322222223444555555555544432 4332
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHh
Q 048659 109 ----ESVQEIMGALRLKFRIIRAAL 129 (146)
Q Consensus 109 ----~~~~~~l~kiR~Kfr~i~~~l 129 (146)
.|+.+-|+|+++=++..-.+|
T Consensus 211 ~a~K~DI~EEldRL~sHv~~~~~iL 235 (290)
T COG1561 211 LAQKADIAEELDRLKSHVKEFRNIL 235 (290)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999988888
No 24
>PRK06328 type III secretion system protein; Validated
Probab=62.30 E-value=81 Score=25.33 Aligned_cols=9 Identities=22% Similarity=0.497 Sum_probs=4.3
Q ss_pred hHhHHhHhH
Q 048659 15 DIFDSSLNL 23 (146)
Q Consensus 15 D~fD~il~l 23 (146)
..|.+++..
T Consensus 23 ~~~~~~~~A 31 (223)
T PRK06328 23 EAFSALLDA 31 (223)
T ss_pred HHHHHHHhH
Confidence 345555443
No 25
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=61.34 E-value=20 Score=32.51 Aligned_cols=70 Identities=19% Similarity=0.339 Sum_probs=45.5
Q ss_pred HhhhhhHH-HHHHHHhhhhCCC-----------------CCCHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHH
Q 048659 61 ELGFYKGC-VDVWNSAIRIAPT-----------------RFSARVRKGIKQMEELIEKYPVNDPENESVQEIMGALRLKF 122 (146)
Q Consensus 61 e~G~~~G~-~~~w~~~~~~~~~-----------------~~s~r~~k~i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kf 122 (146)
-.|+|.+- ...|..++..... ..-|.+.|.|..+...+... +--..++.......|.+|
T Consensus 85 ~fG~yss~rmk~W~~Iv~~yeK~n~~L~E~a~~L~r~v~YeIP~lkKqi~k~~q~~~d~---~kk~~e~~~~~~~~~~~~ 161 (507)
T PF05600_consen 85 IFGRYSSQRMKDWQEIVKLYEKDNLYLAEAAQILVRNVNYEIPALKKQIAKCQQQLEDL---DKKEEELQRSAAEARERY 161 (507)
T ss_pred eeccccchhHHHHHHHHHHHHhccchHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHH
Confidence 35777555 7888887755421 01134555555555555432 112367888999999999
Q ss_pred HHHHHHhCCCC
Q 048659 123 RIIRAALGVKL 133 (146)
Q Consensus 123 r~i~~~lg~~~ 133 (146)
+..|.-+|++.
T Consensus 162 ~~~c~~lGI~G 172 (507)
T PF05600_consen 162 KKACKQLGIKG 172 (507)
T ss_pred HHHHHHhCCcc
Confidence 99999999874
No 26
>TIGR01784 T_den_put_tspse conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.
Probab=61.19 E-value=28 Score=27.47 Aligned_cols=13 Identities=0% Similarity=0.087 Sum_probs=5.1
Q ss_pred hhhHHHHHHHHhh
Q 048659 64 FYKGCVDVWNSAI 76 (146)
Q Consensus 64 ~~~G~~~~w~~~~ 76 (146)
..+|...+-+.++
T Consensus 235 ~~e~~~~~a~~ll 247 (270)
T TIGR01784 235 ILEAKLETAKKLL 247 (270)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444433333
No 27
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=60.94 E-value=27 Score=23.39 Aligned_cols=40 Identities=10% Similarity=0.089 Sum_probs=30.7
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCC
Q 048659 94 MEELIEKYPVNDPENESVQEIMGALRLKFRIIRAALGVKL 133 (146)
Q Consensus 94 L~~Li~~~p~~n~~~~~~~~~l~kiR~Kfr~i~~~lg~~~ 133 (146)
+...+...+-.+-....+...++.+|.+|+.++.+++..-
T Consensus 37 i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~l~~~sg 76 (96)
T PF12776_consen 37 IAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKELRNHSG 76 (96)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3344444555566678899999999999999999998654
No 28
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=60.41 E-value=19 Score=24.02 Aligned_cols=39 Identities=13% Similarity=0.317 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHH----hhCCCCCCCh--hhHHHHHHHHHHHHH
Q 048659 85 ARVRKGIKQMEELI----EKYPVNDPEN--ESVQEIMGALRLKFR 123 (146)
Q Consensus 85 ~r~~k~i~~L~~Li----~~~p~~n~~~--~~~~~~l~kiR~Kfr 123 (146)
+-+++.++.|+-+- +.|-.+|..+ ++++..++||+++||
T Consensus 21 s~lr~eiealkY~N~yL~~~~v~~~g~~gl~~~~~e~~r~~~~~k 65 (66)
T PF07438_consen 21 SELRKEIEALKYMNDYLFDQFVRDNGYEGLEEYEIEIERIKKDFK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHhc
Confidence 34556666665433 3555555554 889999999999997
No 29
>PF12432 DUF3677: Protein of unknown function (DUF3677) ; InterPro: IPR022145 This domain family is found in eukaryotes, and is approximately 80 amino acids in length.
Probab=57.69 E-value=46 Score=22.75 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=34.4
Q ss_pred HHHHHHHHhhhhCCCCCCHHHHHHH-HHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHH
Q 048659 67 GCVDVWNSAIRIAPTRFSARVRKGI-KQMEELIEKYPVNDPENESVQEIMGALRLKFRI 124 (146)
Q Consensus 67 G~~~~w~~~~~~~~~~~s~r~~k~i-~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kfr~ 124 (146)
-+.+.|.+- +++.+.+ +.|..++-.+-..++.|.+..+.|-|||.|-+.
T Consensus 20 ~~lE~wlqn---------~kl~r~a~elL~~l~~n~~~~~~~D~e~i~~Llkl~lk~k~ 69 (83)
T PF12432_consen 20 SRLEMWLQN---------PKLQRPAQELLSSLCYNCDSHSPEDSEVIDNLLKLRLKSKA 69 (83)
T ss_pred HHHHHHhhc---------cccchHHHHHHHHHHhcccCCchhhHHHHHHHHHHhhccch
Confidence 566788762 2344433 445677777777788887788999999988876
No 30
>PRK06032 fliH flagellar assembly protein H; Validated
Probab=56.03 E-value=96 Score=24.22 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=13.1
Q ss_pred hHhHHHHHHHHHHHHHHHhHHH
Q 048659 20 SLNLEQTHLKEGYDEGYAHGLA 41 (146)
Q Consensus 20 il~lEe~~~~eGy~eG~~~G~~ 41 (146)
++..+...|++||.+|..++..
T Consensus 33 ~~~a~~~a~~~Gy~aG~~~A~~ 54 (199)
T PRK06032 33 VAEAEAAAYAQGFAAGQREAAA 54 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555567777776666653
No 31
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=55.99 E-value=1e+02 Score=25.64 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=66.8
Q ss_pred CCCchhHhHHhHhHHHHHHHHHHHHHHHhHHHhh-----------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhh
Q 048659 10 SNSIEDIFDSSLNLEQTHLKEGYDEGYAHGLATG-----------KEEAKDVGLKHGFETGEELGFYKGCVDVWNSAIRI 78 (146)
Q Consensus 10 ~~d~dD~fD~il~lEe~~~~eGy~eG~~~G~~~G-----------~~EG~~~G~~~G~q~g~e~G~~~G~~~~w~~~~~~ 78 (146)
+++++ +++|-.|+....+.-+-+-+.+=.... +.+|..++...--.....+--.-..+..|...+..
T Consensus 146 s~~v~--lpel~~L~~~l~~~~W~~~~~~~~~~~~~~tL~~l~~Ll~~g~~l~~~~~~~~~~~L~~~l~~~~~We~ka~~ 223 (335)
T PF08429_consen 146 SFGVD--LPELDQLRRRLEQLEWLEEAREILSDPDRLTLDELRELLDEGERLGIPSDEKLMAELQELLKQGEEWEEKAKE 223 (335)
T ss_pred cCcee--ChhHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 677777777777666655554432222 34455444422233444445556667778775432
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHHHHhC
Q 048659 79 APTRFSARVRKGIKQMEELIEKYPVNDPENESVQEIMGALRLKFRIIRAALG 130 (146)
Q Consensus 79 ~~~~~s~r~~k~i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kfr~i~~~lg 130 (146)
.-. ...--...++.|..-.+.+|..-|....+.+.+.+.|.=-+.|-.++.
T Consensus 224 ~L~-~~~~~l~~Le~l~~~~~~ipv~~~~~~~L~~~l~kak~w~~~i~~ll~ 274 (335)
T PF08429_consen 224 LLS-RPRVSLEQLEALLEEAENIPVSLPSLDKLKDALQKAKEWLRQIEELLE 274 (335)
T ss_pred HHh-cCCCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 211 000012234555555568888877778899999998876666666663
No 32
>COG5464 Uncharacterized conserved protein [Function unknown]
Probab=53.07 E-value=19 Score=30.51 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=20.3
Q ss_pred HHHHHHHHHhHHHhhHHHHHHHHH--HHHHHHH
Q 048659 29 KEGYDEGYAHGLATGKEEAKDVGL--KHGFETG 59 (146)
Q Consensus 29 ~eGy~eG~~~G~~~G~~EG~~~G~--~~G~q~g 59 (146)
..=|++..++|.++|-..|..-|. ++|-+.|
T Consensus 214 t~~yqEi~eeg~~~Ge~~g~~egr~~~eG~~eg 246 (289)
T COG5464 214 TRFYQEIAEEGPQHGEALMTIAGRLEQEGKQEG 246 (289)
T ss_pred hHHHHHHHHHhhhhhhHHhhHhhHHHHHHHHhh
Confidence 344677777777777666666666 5665555
No 33
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family. This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)
Probab=48.08 E-value=1.1e+02 Score=22.49 Aligned_cols=16 Identities=13% Similarity=0.295 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 048659 85 ARVRKGIKQMEELIEK 100 (146)
Q Consensus 85 ~r~~k~i~~L~~Li~~ 100 (146)
..+...+......+..
T Consensus 97 e~l~~lv~~al~~~~~ 112 (166)
T TIGR02499 97 ERLVRLLRQLLRAVAN 112 (166)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 4555656555555553
No 34
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=47.12 E-value=22 Score=24.44 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=14.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHH
Q 048659 40 LATGKEEAKDVGLKHGFETGE 60 (146)
Q Consensus 40 ~~~G~~EG~~~G~~~G~q~g~ 60 (146)
+++|+.|++-.|+-.|.+.+.
T Consensus 45 r~~G~SE~~I~Gfl~Gl~~As 65 (77)
T PF10911_consen 45 RKQGWSESYILGFLAGLQYAS 65 (77)
T ss_pred HHccccHHHHHHHHHHHHHHH
Confidence 457777777777777766654
No 35
>PF00486 Trans_reg_C: Transcriptional regulatory protein, C terminal; InterPro: IPR001867 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain that is almost always found associated with the response regulator receiver domain (see IPR001789 from INTERPRO). It may play a role in DNA binding [].; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2K4J_A 2JPB_A 1ODD_A 1OPC_A 1KGS_A 2PMU_E 2JZY_A 1GXP_B 1QQI_A 2Z33_A ....
Probab=45.75 E-value=54 Score=20.65 Aligned_cols=33 Identities=18% Similarity=0.149 Sum_probs=24.2
Q ss_pred HHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHH
Q 048659 92 KQMEELIEKYPVNDPENESVQEIMGALRLKFRII 125 (146)
Q Consensus 92 ~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kfr~i 125 (146)
++|.+.+-.-+. ++.+..+...|.+||.|++..
T Consensus 28 ~~l~~~~w~~~~-~~~~~~l~~~I~rLR~kL~~~ 60 (77)
T PF00486_consen 28 EELIEALWGDEE-DVSDNSLDVHISRLRKKLEDA 60 (77)
T ss_dssp HHHHHHHTSSSS-TTCTHHHHHHHHHHHHHHHSS
T ss_pred HHhCChhhhccc-ccchhhHHHHHHHHHHHHhhc
Confidence 566666664444 566678999999999998764
No 36
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This is the dimerisation and phosphoacceptor domain of a subfamily of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO. It is usually found adjacent to a C-terminal ATPase domain (IPR003594 from INTERPRO). This domain is found in a wide range of bacteria and also several archaea.
Probab=45.52 E-value=69 Score=21.15 Aligned_cols=42 Identities=14% Similarity=0.315 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 048659 85 ARVRKGIKQMEELIEKYPVNDPENESVQEIMGALRLKFRIIRA 127 (146)
Q Consensus 85 ~r~~k~i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kfr~i~~ 127 (146)
-|+..++..+.+||. +......+++....|..++++.+.+..
T Consensus 4 HRVkNnLq~i~sll~-lq~~~~~~~e~~~~L~~~~~RI~aia~ 45 (76)
T PF07568_consen 4 HRVKNNLQIISSLLR-LQARRSEDPEAREALEDAQNRIQAIAL 45 (76)
T ss_pred HhHHhHHHHHHHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 477778888888887 222223333445555566655555544
No 37
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=43.45 E-value=43 Score=22.62 Aligned_cols=33 Identities=15% Similarity=0.394 Sum_probs=24.0
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHhCCCCcCC
Q 048659 104 NDPENESVQEIMGALRLKFRIIRAALGVKLEYD 136 (146)
Q Consensus 104 ~n~~~~~~~~~l~kiR~Kfr~i~~~lg~~~~~~ 136 (146)
+.|..+.++-.++.||.|.|++...+=-+..|+
T Consensus 2 s~~s~ENv~~MIe~Ik~KL~mvN~~~i~~~~f~ 34 (71)
T PF06569_consen 2 SEPSQENVEYMIEEIKQKLNMVNAGAIKPEDFS 34 (71)
T ss_pred CCccHHHHHHHHHHHHHHHHHhhHHhCCHHhCC
Confidence 456667788888899999998877665455553
No 38
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=41.74 E-value=57 Score=23.17 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 048659 88 RKGIKQMEELIEKYPVNDPENESVQEIMGALRLKFRIIRAA 128 (146)
Q Consensus 88 ~k~i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kfr~i~~~ 128 (146)
...++.++.-++..|..++- .++.-.|.++|+..+.+.+.
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv-~~L~l~l~el~G~~~~l~~~ 87 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDV-HDLQLELAELRGELKELSAR 87 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHhHHHHHHHH
Confidence 66788889999999976543 34555555555555444433
No 39
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=41.08 E-value=59 Score=19.69 Aligned_cols=58 Identities=24% Similarity=0.475 Sum_probs=31.6
Q ss_pred HhhhhhHHHHHHHHhhhhCCCCCCHHH--------HHHHHHHHHHHhhCCCCCCChhhHHHHHHHH
Q 048659 61 ELGFYKGCVDVWNSAIRIAPTRFSARV--------RKGIKQMEELIEKYPVNDPENESVQEIMGAL 118 (146)
Q Consensus 61 e~G~~~G~~~~w~~~~~~~~~~~s~r~--------~k~i~~L~~Li~~~p~~n~~~~~~~~~l~ki 118 (146)
+.|-|..-...++.++...|....-+. ....+.-..+++.++..+|.+..+...+.+|
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 445555556666666666664322111 1234555566666766777766666655543
No 40
>PHA00438 hypothetical protein
Probab=39.00 E-value=32 Score=23.80 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=12.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHH
Q 048659 40 LATGKEEAKDVGLKHGFETGE 60 (146)
Q Consensus 40 ~~~G~~EG~~~G~~~G~q~g~ 60 (146)
+++||.|++-.|+-.|.+.+.
T Consensus 45 R~~G~SE~~IaGfl~Gl~yAs 65 (81)
T PHA00438 45 RQAGYSEAFIAGFLAGLQYAS 65 (81)
T ss_pred HHcCCcHHHHHHHHHHHHHHH
Confidence 556677766666666655544
No 41
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=38.05 E-value=99 Score=25.76 Aligned_cols=54 Identities=19% Similarity=0.239 Sum_probs=31.3
Q ss_pred hhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHH
Q 048659 65 YKGCVDVWNSAIRIAPTRFSARVRKGIKQMEELIEKYPVNDPENESVQEIMGALRLKF 122 (146)
Q Consensus 65 ~~G~~~~w~~~~~~~~~~~s~r~~k~i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kf 122 (146)
++|++.+|.. ..++...+.....+..+.++|+++|-+-=. .|....|..+|+++
T Consensus 113 lkgLs~~~~i---~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya-~dA~~~i~~~~d~L 166 (254)
T COG4105 113 LKGLSYFFQI---DDVTRDQSAARAAFAAFKELVQRYPNSRYA-PDAKARIVKLNDAL 166 (254)
T ss_pred HHHHHHhccC---CccccCHHHHHHHHHHHHHHHHHCCCCcch-hhHHHHHHHHHHHH
Confidence 4566654432 122222355778999999999999965211 24455555555443
No 42
>PRK11443 lipoprotein; Provisional
Probab=36.92 E-value=12 Score=27.82 Aligned_cols=16 Identities=13% Similarity=0.196 Sum_probs=9.7
Q ss_pred HHHHHHHhhhhhHHHH
Q 048659 55 GFETGEELGFYKGCVD 70 (146)
Q Consensus 55 G~q~g~e~G~~~G~~~ 70 (146)
||++|+.=..|.|+|.
T Consensus 83 ay~lG~~G~~Y~GvC~ 98 (124)
T PRK11443 83 TYARGLSGKSFPASCD 98 (124)
T ss_pred HHHHhcCCCccCCCCC
Confidence 5566665555666665
No 43
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=36.47 E-value=1.2e+02 Score=24.31 Aligned_cols=35 Identities=14% Similarity=0.337 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHH
Q 048659 87 VRKGIKQMEELIEKYPVNDPENESVQEIMGALRLKF 122 (146)
Q Consensus 87 ~~k~i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kf 122 (146)
..+.+..|..+|+.+|-+.- ..+....|..||++.
T Consensus 140 ~~~A~~~~~~li~~yP~S~y-a~~A~~rl~~l~~~l 174 (243)
T PRK10866 140 ARAAFRDFSKLVRGYPNSQY-TTDATKRLVFLKDRL 174 (243)
T ss_pred HHHHHHHHHHHHHHCcCChh-HHHHHHHHHHHHHHH
Confidence 56788999999999995532 234556666666554
No 44
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=36.19 E-value=54 Score=16.83 Aligned_cols=19 Identities=26% Similarity=0.571 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhhCCCC
Q 048659 86 RVRKGIKQMEELIEKYPVN 104 (146)
Q Consensus 86 r~~k~i~~L~~Li~~~p~~ 104 (146)
+..+.++.+..+|+.+|-+
T Consensus 15 ~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 15 DYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHHHCcCC
Confidence 3556788888888888853
No 45
>PRK06328 type III secretion system protein; Validated
Probab=33.67 E-value=2.5e+02 Score=22.49 Aligned_cols=6 Identities=17% Similarity=0.639 Sum_probs=3.1
Q ss_pred CCChhh
Q 048659 105 DPENES 110 (146)
Q Consensus 105 n~~~~~ 110 (146)
||+|.+
T Consensus 139 nP~D~~ 144 (223)
T PRK06328 139 NPKDLA 144 (223)
T ss_pred CHHHHH
Confidence 565533
No 46
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=33.63 E-value=66 Score=22.97 Aligned_cols=13 Identities=31% Similarity=0.248 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhC
Q 048659 118 LRLKFRIIRAALG 130 (146)
Q Consensus 118 iR~Kfr~i~~~lg 130 (146)
||.|.+.|+.+|.
T Consensus 108 VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 108 VREKAKEILELLN 120 (125)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 8999999988874
No 47
>PRK09098 type III secretion system protein HrpB; Validated
Probab=31.86 E-value=1.8e+02 Score=23.49 Aligned_cols=13 Identities=38% Similarity=0.327 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhC
Q 048659 118 LRLKFRIIRAALG 130 (146)
Q Consensus 118 iR~Kfr~i~~~lg 130 (146)
+|..+..+....|
T Consensus 165 v~~~~~~~~~~~g 177 (233)
T PRK09098 165 ARAAFGAAAAAGG 177 (233)
T ss_pred HHHHHHHHHHhcC
Confidence 3444444444444
No 48
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=31.52 E-value=1.1e+02 Score=23.35 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCh
Q 048659 85 ARVRKGIKQMEELIEKYPVNDPEN 108 (146)
Q Consensus 85 ~r~~k~i~~L~~Li~~~p~~n~~~ 108 (146)
.-+.+...++..||+++|..+...
T Consensus 63 a~i~~~akqId~LIdsLP~~~~~~ 86 (139)
T KOG1510|consen 63 ADIAKKAKQIDTLIDSLPGEEGSA 86 (139)
T ss_pred HHHHHHHHHHHHHHHhCCCcccCH
Confidence 346678899999999999986643
No 49
>PLN03075 nicotianamine synthase; Provisional
Probab=30.98 E-value=2.7e+02 Score=23.50 Aligned_cols=42 Identities=17% Similarity=0.125 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 048659 84 SARVRKGIKQMEELIEKYPVNDPENESVQEIMGALRLKFRIIRA 127 (146)
Q Consensus 84 s~r~~k~i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kfr~i~~ 127 (146)
++.+..-..+|-.+.. |.+..+...+-+.+++||.+++.+|+
T Consensus 31 s~~v~~lf~~Lv~~c~--~~~~~~~~~l~~~i~~~~~~l~~l~~ 72 (296)
T PLN03075 31 SKEVNTLFTQLVSTCI--PPSSIDVTKLCEEIQEMRSKLIKLCG 72 (296)
T ss_pred chhHHHHHHHHHHHhC--CCCcchHHHhhHHHHHHHHHHHHHHH
Confidence 3444444444444444 32223335677779999999999999
No 50
>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []. The function of this family is unclear.; GO: 0009877 nodulation
Probab=30.84 E-value=2.9e+02 Score=22.37 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=13.5
Q ss_pred HhHHHHHHHHHHHHHHHhHHHhhHHHHH
Q 048659 21 LNLEQTHLKEGYDEGYAHGLATGKEEAK 48 (146)
Q Consensus 21 l~lEe~~~~eGy~eG~~~G~~~G~~EG~ 48 (146)
...-.+.|++.+..|+++|+++|..+--
T Consensus 47 r~~Ar~ayE~~rarGyeeG~~~g~e~~A 74 (207)
T PF06635_consen 47 REWARAAYERERARGYEEGRRAGAEQAA 74 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3334445555555555555554444433
No 51
>PRK00347 putative DNA-binding transcriptional regulator; Reviewed
Probab=29.89 E-value=86 Score=25.50 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhh-CC--------CC--------CCChhhHHHHHHHHHHH
Q 048659 80 PTRFSARVRKGIKQMEELIEK-YP--------VN--------DPENESVQEIMGALRLK 121 (146)
Q Consensus 80 ~~~~s~r~~k~i~~L~~Li~~-~p--------~~--------n~~~~~~~~~l~kiR~K 121 (146)
|++.|+|..|||+.|.++++. +- +. ...|..|-+.+.+++.+
T Consensus 149 PDapT~RG~kHl~eL~~l~~~G~ra~vlFvvqr~d~~~F~P~~~~Dp~fa~~l~~A~~~ 207 (234)
T PRK00347 149 PDAVTERGQKHLRELIELAKEGHRAVLLFLVQRSDIKRFSPADEIDPKYAELLREAVKA 207 (234)
T ss_pred CCCCcHHHHHHHHHHHHHHHCCCcEEEEEEEeCCCCCEEeECcccCHHHHHHHHHHHHC
Confidence 566789999999999999873 11 11 12246788888777653
No 52
>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=29.52 E-value=1.6e+02 Score=22.03 Aligned_cols=47 Identities=11% Similarity=0.231 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHHHHhCC
Q 048659 85 ARVRKGIKQMEELIEKYPVNDPENESVQEIMGALRLKFRIIRAALGV 131 (146)
Q Consensus 85 ~r~~k~i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kfr~i~~~lg~ 131 (146)
.|+++.++...+.++..+.++.+-...+..|+++.++.+++-..-|+
T Consensus 93 ~~ae~a~~~Ae~~L~~~~~~~~~~~~a~~~L~rA~~Rl~~~~~~~~~ 139 (145)
T PRK13452 93 AEAEKARARAKEVLKNPDASKLDIEAANKRLKEADARLKALNSSNGL 139 (145)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 67888888888888876433333345677888888888876554443
No 53
>PF12063 DUF3543: Domain of unknown function (DUF3543); InterPro: IPR022708 This domain belonging to serine/threonine-protein kinases is functionally uncharacterised. This domain is found in eukaryotes. It is typically between 217 to 291 amino acids in length and is found associated with PF00069 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0004674 protein serine/threonine kinase activity
Probab=29.20 E-value=2e+02 Score=23.36 Aligned_cols=68 Identities=12% Similarity=0.231 Sum_probs=40.8
Q ss_pred HHHHHHhhhhhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHHhhCCCC--C---CCh-hhHHHHHHHHHHHHHHHHH
Q 048659 56 FETGEELGFYKGCVDVWNSAIRIAPTRFSARVRKGIKQMEELIEKYPVN--D---PEN-ESVQEIMGALRLKFRIIRA 127 (146)
Q Consensus 56 ~q~g~e~G~~~G~~~~w~~~~~~~~~~~s~r~~k~i~~L~~Li~~~p~~--n---~~~-~~~~~~l~kiR~Kfr~i~~ 127 (146)
|..+++++....+-+ +...+...+..+=.+.|--|+.|++..+.. + ++| ..+.+-+..|+++.+.+..
T Consensus 162 YdrALemsr~AA~~E----l~g~~~~~ce~~Y~tA~~lLe~Ll~~~~~~~~~~~~~~Dr~~i~k~i~sI~~RL~~Lr~ 235 (238)
T PF12063_consen 162 YDRALEMSRTAAVDE----LFGENLEGCEQRYETAIWLLEALLDDDDLEEENPLDEEDREIIKKYIDSIENRLSALRK 235 (238)
T ss_pred HHHHHHHHHHHHHHH----HhCcCHhHHHHHHHHHHHHHHHHHhHhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677666555554 333233334456677888888888876322 1 122 3477777888888777654
No 54
>PF08656 DASH_Dad3: DASH complex subunit Dad3; InterPro: IPR013965 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=28.25 E-value=2e+02 Score=19.68 Aligned_cols=46 Identities=11% Similarity=0.272 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHHHHhC
Q 048659 85 ARVRKGIKQMEELIEKYPVNDPENESVQEIMGALRLKFRIIRAALG 130 (146)
Q Consensus 85 ~r~~k~i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kfr~i~~~lg 130 (146)
.|+..++..|-+-+..+...+.+.+.+.+.|..|--|.-+|+.+++
T Consensus 13 ~~La~~L~~L~~~l~~L~~~~~~~~~lL~~LR~LE~K~glV~TL~K 58 (78)
T PF08656_consen 13 QRLADNLKTLSDTLKDLNSSNSPSEELLDGLRELERKIGLVYTLFK 58 (78)
T ss_pred HHHHHHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666644555556777777777778888877765
No 55
>TIGR02507 MtrF tetrahydromethanopterin S-methyltransferase, F subunit. coenzyme M methyltransferase in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methy-transfer reaction to drive sodium-ion pump. Archaea domain, have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=27.30 E-value=1.1e+02 Score=20.43 Aligned_cols=31 Identities=19% Similarity=0.494 Sum_probs=24.6
Q ss_pred CCCCCCCh-hhHHHHHHHHHHHHHHHHHHhCC
Q 048659 101 YPVNDPEN-ESVQEIMGALRLKFRIIRAALGV 131 (146)
Q Consensus 101 ~p~~n~~~-~~~~~~l~kiR~Kfr~i~~~lg~ 131 (146)
+|.+|.++ +.+++.+++||=|..++++--++
T Consensus 2 ip~~~~P~m~~I~~~ve~i~YK~qLiaR~~kL 33 (65)
T TIGR02507 2 IPTVAEPDIESIKSLVEAIDYRVQLITRDIGL 33 (65)
T ss_pred CCcccCCcHHHHHHHHHHHHHHHHHHhhccch
Confidence 57775554 78999999999999888876665
No 56
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.78 E-value=2.2e+02 Score=25.75 Aligned_cols=43 Identities=19% Similarity=0.262 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhCCCCCCCh---hhHHHHHHHHHHHHHHHHHHh
Q 048659 87 VRKGIKQMEELIEKYPVNDPEN---ESVQEIMGALRLKFRIIRAAL 129 (146)
Q Consensus 87 ~~k~i~~L~~Li~~~p~~n~~~---~~~~~~l~kiR~Kfr~i~~~l 129 (146)
+...++.|.+|+..+.-.|++. +.+.+.++..|.|.|.|..++
T Consensus 200 ~~~~~~ll~emL~~v~p~~~e~~~~el~~~L~~qcr~~q~rv~~Li 245 (470)
T KOG1087|consen 200 VKGKADLLSEMLNAVDPSDEEAAKDELLVDLVEQCRSKQRRVMHLI 245 (470)
T ss_pred HHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777778887666655544 446777778888777755444
No 57
>PF04402 SIMPL: Protein of unknown function (DUF541); InterPro: IPR007497 Members of this family have so far been found in bacteria and mouse UniProtKB/Swiss-Prot or UniProtKB/TrEMBL entries. However possible family members have also been identified in translated rat (GenBank:AW144450) and human (GenBank:AI478629) ESTs. A mouse family member has been named SIMPL (signalling molecule that associates with mouse pelle-like kinase). SIMPL appears to facilitate and/or regulate complex formation between IRAK/mPLK (IL-1 receptor-associated kinase) and IKK (inhibitor of kappa-B kinase) containing complexes, and thus regulate NF-kappa-B activity []. Separate experiments demonstrate that a mouse family member (named LaXp180) binds the Listeria monocytogenes surface protein ActA, which is a virulence factor that induces actin polymerisation. It may also bind stathmin, a protein involved in signal transduction and in the regulation of microtubule dynamics []. In bacteria its function is unknown, but it is thought to be located in the periplasm or outer membrane.
Probab=26.26 E-value=92 Score=23.48 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCC
Q 048659 109 ESVQEIMGALRLKFRIIRAALGVK 132 (146)
Q Consensus 109 ~~~~~~l~kiR~Kfr~i~~~lg~~ 132 (146)
+-+..+++++|.|.+.++..+|++
T Consensus 128 e~~~~A~~~A~~kA~~lA~~~g~k 151 (210)
T PF04402_consen 128 EALKEAIKDAKEKAEALAKALGVK 151 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 447899999999999999999975
No 58
>PF05315 ICEA: ICEA Protein; InterPro: IPR007979 This family consists of several ICEA proteins from Helicobacter pylori, infection of which causes gastritis and peptic ulcer disease, and the bacteria is classified as a definite carcinogen of gastric cancer. ICEA1 is speculated to be associated with peptic ulcer disease and may have endonuclease activity [].
Probab=25.62 E-value=51 Score=26.90 Aligned_cols=17 Identities=24% Similarity=0.509 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 048659 44 KEEAKDVGLKHGFETGE 60 (146)
Q Consensus 44 ~~EG~~~G~~~G~q~g~ 60 (146)
+.||++.||..||++|.
T Consensus 209 ~~e~~~~~~~~~y~~~y 225 (230)
T PF05315_consen 209 ANEGYQKGYDEGYQIGY 225 (230)
T ss_pred HHHHHHHhHHHHHHhcc
Confidence 55666666666666553
No 59
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=25.31 E-value=1.1e+02 Score=20.18 Aligned_cols=31 Identities=16% Similarity=0.396 Sum_probs=24.7
Q ss_pred CCCCCCCh-hhHHHHHHHHHHHHHHHHHHhCC
Q 048659 101 YPVNDPEN-ESVQEIMGALRLKFRIIRAALGV 131 (146)
Q Consensus 101 ~p~~n~~~-~~~~~~l~kiR~Kfr~i~~~lg~ 131 (146)
+|.+++.+ ..++..+++||=|..+|.+--++
T Consensus 2 v~~~~~P~m~~I~~~vedi~Yk~qLiaR~~kL 33 (64)
T PF09472_consen 2 VPMSNKPNMGAIDKMVEDIRYKAQLIARDQKL 33 (64)
T ss_pred CCcccCCCHHHHHHHHHHHHHHHHHhhhcchh
Confidence 57787766 88999999999888888765544
No 60
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=25.19 E-value=1.3e+02 Score=21.62 Aligned_cols=19 Identities=26% Similarity=0.422 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 048659 109 ESVQEIMGALRLKFRIIRA 127 (146)
Q Consensus 109 ~~~~~~l~kiR~Kfr~i~~ 127 (146)
...+..|+.+++|||++..
T Consensus 71 ~~~E~~mk~l~~k~~~~e~ 89 (101)
T PF12308_consen 71 RKMETQMKGLESKFRQVED 89 (101)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6678999999999998764
No 61
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.89 E-value=3.6e+02 Score=22.21 Aligned_cols=16 Identities=31% Similarity=0.995 Sum_probs=13.7
Q ss_pred hhhhhHHHHHHHHhhh
Q 048659 62 LGFYKGCVDVWNSAIR 77 (146)
Q Consensus 62 ~G~~~G~~~~w~~~~~ 77 (146)
+-||++|+.+|.+.++
T Consensus 224 i~fy~~~~~~We~~l~ 239 (240)
T cd07667 224 IQYYEKCLTAWESIIP 239 (240)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 6789999999999763
No 62
>PRK15322 invasion protein OrgB; Provisional
Probab=24.72 E-value=3.8e+02 Score=21.75 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=18.2
Q ss_pred HhHHHHHHHHHH---HHHHHhHHHhhHHHHHHHHHHHHHHHH
Q 048659 21 LNLEQTHLKEGY---DEGYAHGLATGKEEAKDVGLKHGFETG 59 (146)
Q Consensus 21 l~lEe~~~~eGy---~eG~~~G~~~G~~EG~~~G~~~G~q~g 59 (146)
-.|+.++.+..- +++.++...- +..+++.||+.|.++.
T Consensus 15 ~~l~~qA~~kA~~ii~qA~~eaE~i-r~~A~~~GYq~Gl~qa 55 (210)
T PRK15322 15 ERLEQQARRRAKRILRQAEEEAETL-RMYAYQEGYEQGMIDA 55 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 445555554443 3444433322 4555555555555444
No 63
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=24.10 E-value=2.7e+02 Score=25.98 Aligned_cols=40 Identities=15% Similarity=0.375 Sum_probs=27.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHHHhhCCCCCCC
Q 048659 54 HGFETGEELGFYKGCVDVWNSAIRIAPTRFSARVRKGIKQMEELIEKYPVNDPE 107 (146)
Q Consensus 54 ~G~q~g~e~G~~~G~~~~w~~~~~~~~~~~s~r~~k~i~~L~~Li~~~p~~n~~ 107 (146)
+||.++.+-.||...+..-..- ..+.|..+++.||.-++-
T Consensus 36 k~~~i~riR~fy~rkvk~~~~~--------------~~~kL~~il~~FP~~~~i 75 (620)
T KOG1490|consen 36 KGFKISRIRQFYARKVKFTQTT--------------LTEKLDDILQEFPKLNDI 75 (620)
T ss_pred chhhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHhccccccc
Confidence 4777777888887766643331 246688888889977654
No 64
>PRK13275 mtrF tetrahydromethanopterin S-methyltransferase subunit F; Provisional
Probab=23.94 E-value=1.3e+02 Score=20.10 Aligned_cols=31 Identities=16% Similarity=0.410 Sum_probs=24.5
Q ss_pred CCCCCCCh-hhHHHHHHHHHHHHHHHHHHhCC
Q 048659 101 YPVNDPEN-ESVQEIMGALRLKFRIIRAALGV 131 (146)
Q Consensus 101 ~p~~n~~~-~~~~~~l~kiR~Kfr~i~~~lg~ 131 (146)
+|.+|+.+ .-++..+++||=|..++++--++
T Consensus 2 v~~~~~P~m~~I~~~ve~i~Yk~qLiaR~~kL 33 (67)
T PRK13275 2 VPMSNKPNMSAIDNVVEDIRYKAQLIARNQKL 33 (67)
T ss_pred CCcCCCCChHHHHHHHHHHHHHHHHHhhcchh
Confidence 57776665 77999999999998888876554
No 65
>PF10428 SOG2: RAM signalling pathway protein; InterPro: IPR019487 The RAM signalling pathway regulates Ace2p transcription factor activity and cellular morphogenesis in Saccharomyces cerevisiae (Baker's yeast), and is thought to be conserved amongst eukaryotes []. This entry is found in one of the components of this pathway, the leucine-rich repeat-containing protein SOG2.
Probab=23.58 E-value=1.8e+02 Score=25.95 Aligned_cols=46 Identities=22% Similarity=0.274 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCCh-------hhHHHHHHHHHHHHHHHHHHhCCC
Q 048659 87 VRKGIKQMEELIEKYPVNDPEN-------ESVQEIMGALRLKFRIIRAALGVK 132 (146)
Q Consensus 87 ~~k~i~~L~~Li~~~p~~n~~~-------~~~~~~l~kiR~Kfr~i~~~lg~~ 132 (146)
...||++|.+.|+.+-..+.++ +.+......+=.-||.||++|...
T Consensus 65 a~~hi~~L~~~Le~~d~~~~~~~~~~~~~~~v~~~c~t~i~af~~i~~~L~~n 117 (445)
T PF10428_consen 65 ANSHIDQLVEALERFDSSSREDEPSPRVNENVIRACQTCISAFKHICSLLRKN 117 (445)
T ss_pred HHhhHHHHHHHHHHHhcccccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999887654333 556667777778899999988643
No 66
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism]
Probab=23.42 E-value=2.2e+02 Score=25.21 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCc
Q 048659 109 ESVQEIMGALRLKFRIIRAALGVKLE 134 (146)
Q Consensus 109 ~~~~~~l~kiR~Kfr~i~~~lg~~~~ 134 (146)
..+++.|.-| ||+||.-||.||+
T Consensus 208 ~t~~emm~ei---Frviciclg~PPe 230 (457)
T KOG4128|consen 208 DTIQEMMPEI---FRVICICLGEPPE 230 (457)
T ss_pred HHHHHHHHHH---HHHHhhhcCCCcc
Confidence 4566666644 9999999999875
No 67
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=23.31 E-value=3.1e+02 Score=20.27 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCCh
Q 048659 87 VRKGIKQMEELIEKYPVNDPEN 108 (146)
Q Consensus 87 ~~k~i~~L~~Li~~~p~~n~~~ 108 (146)
+.....++..||+.+|-.+.+.
T Consensus 78 Ii~kakqIe~LIdsLPg~~~se 99 (144)
T PF11221_consen 78 IIRKAKQIEYLIDSLPGIEVSE 99 (144)
T ss_dssp HHHHHHHHHHHHHHSTTSSS-H
T ss_pred HHHHHHHHHHHHHhCCCCCCCH
Confidence 4556688999999999865544
No 68
>KOG2607 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=22.77 E-value=99 Score=27.93 Aligned_cols=71 Identities=15% Similarity=0.254 Sum_probs=43.5
Q ss_pred HhhhhhH-HHHHHHHhhhhCCC-----------------CCCHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHH
Q 048659 61 ELGFYKG-CVDVWNSAIRIAPT-----------------RFSARVRKGIKQMEELIEKYPVNDPENESVQEIMGALRLKF 122 (146)
Q Consensus 61 e~G~~~G-~~~~w~~~~~~~~~-----------------~~s~r~~k~i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kf 122 (146)
..|+|.+ ....|..+..-... ..-+-+.|.|..+....+.... -.+++..-...+|.+|
T Consensus 83 ~fG~yssqrmkdwqeivr~yEkd~~YlaEaAQIlvrnvnYEIP~LkKQiaK~qQq~tE~~R---Ke~d~~k~aa~~r~qf 159 (505)
T KOG2607|consen 83 IFGRYSSQRMKDWQEIVRAYEKDHIYLAEAAQILVRNVNYEIPYLKKQIAKVQQQMTELDR---KEADIKKSAALSRTQF 159 (505)
T ss_pred hhhhcCCccccCHHHHHHHHhcCceeHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH---HHHHhCccHHHHHHHH
Confidence 4577755 66667665532211 1114456666666555553321 2356667777899999
Q ss_pred HHHHHHhCCCCc
Q 048659 123 RIIRAALGVKLE 134 (146)
Q Consensus 123 r~i~~~lg~~~~ 134 (146)
-..|+.||++-+
T Consensus 160 e~~c~qlglkG~ 171 (505)
T KOG2607|consen 160 EDACRQLGLKGN 171 (505)
T ss_pred HHHHHHhCCccc
Confidence 999999999743
No 69
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=22.72 E-value=3.5e+02 Score=20.63 Aligned_cols=38 Identities=32% Similarity=0.596 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHH
Q 048659 84 SARVRKGIKQMEELIEKYPVNDPENESVQEIMGALRLKF 122 (146)
Q Consensus 84 s~r~~k~i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kf 122 (146)
.....+.+..+..+|+.+|-+.- -.+....|..||++.
T Consensus 103 ~~~~~~A~~~~~~li~~yP~S~y-~~~A~~~l~~l~~~l 140 (203)
T PF13525_consen 103 QTSTRKAIEEFEELIKRYPNSEY-AEEAKKRLAELRNRL 140 (203)
T ss_dssp -HHHHHHHHHHHHHHHH-TTSTT-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCcCchH-HHHHHHHHHHHHHHH
Confidence 35678899999999999997533 245556666666554
No 70
>PF09058 L27_1: L27_1; InterPro: IPR015143 The L27 domain is a protein interaction module that exists in a large family of scaffold proteins, functioning as an organisation centre of large protein assemblies required for the establishment and maintenance of cell polarity. L27 domains form specific heterotetrameric complexes, in which each domain contains three alpha-helices []. ; PDB: 3LRA_A 1RSO_A.
Probab=22.39 E-value=2.4e+02 Score=18.64 Aligned_cols=49 Identities=24% Similarity=0.453 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHH--HHHHHHhCCCCcCC
Q 048659 86 RVRKGIKQMEELIEKYPVNDPENESVQEIMGALRLKF--RIIRAALGVKLEYD 136 (146)
Q Consensus 86 r~~k~i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kf--r~i~~~lg~~~~~~ 136 (146)
.+.++++.|.+.-.+. +.|+|+.+-..++|+-+-| +++-++|.++.-|.
T Consensus 7 dA~rALelLe~y~~~L--~~~~D~~lr~~ierli~ifkS~LF~ALLDIqe~YE 57 (64)
T PF09058_consen 7 DAHRALELLEEYHNKL--SRPEDEELRTAIERLINIFKSRLFQALLDIQEFYE 57 (64)
T ss_dssp HHHHHHHHHHHHHHTT--SSSS-CCHHHHHHHHHHHHHSHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHhc--CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777754 4788888888888886655 68899998886664
No 71
>PHA02599 dsbA double-stranded DNA binding protein; Provisional
Probab=22.29 E-value=97 Score=21.88 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHH
Q 048659 90 GIKQMEELIEKYPVNDPENESVQEIMGALRLKFRIIR 126 (146)
Q Consensus 90 ~i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kfr~i~ 126 (146)
|-+.|..||..-+-.-..-+.+-+.++.||++.|.=|
T Consensus 16 hg~~l~~lIkEAS~~kt~ie~y~e~iKdIk~rAK~E~ 52 (91)
T PHA02599 16 HGERLAQLIKEASDHKTQIEAYGEMIKDIKDRAKTEL 52 (91)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666443333334678899999999987654
No 72
>TIGR00230 sfsA sugar fermentation stimulation protein. probable regulatory factor involved in maltose metabolism contains a putative DNA binding domain. Isolated as a gene which enabled E.coli strain MK2001 to use maltose.
Probab=22.05 E-value=91 Score=25.44 Aligned_cols=42 Identities=17% Similarity=0.300 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHHHHHHhhCC--------CCCC--------ChhhHHHHHHHHHHH
Q 048659 80 PTRFSARVRKGIKQMEELIEKYP--------VNDP--------ENESVQEIMGALRLK 121 (146)
Q Consensus 80 ~~~~s~r~~k~i~~L~~Li~~~p--------~~n~--------~~~~~~~~l~kiR~K 121 (146)
|+..|+|..|||..|.++++.+- ..+. -|.+|-+.+.+++.|
T Consensus 148 PDApT~RG~kHL~eL~~l~~~~ra~vlF~vqr~d~~~f~p~~~~Dp~fa~~l~~A~~~ 205 (232)
T TIGR00230 148 PDAPTERGRKHLRELEEILKESRAVVLFVVALPSVRAFSPNREGDEEYYRLLRRAHEA 205 (232)
T ss_pred CCCccHHHHHHHHHHHHHHHhCCEEEEEEEeCCCCCEEeeCcccCHHHHHHHHHHHHC
Confidence 56678999999999999998722 1111 245777888776643
No 73
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=22.02 E-value=29 Score=26.54 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=9.8
Q ss_pred HHhhHHHHHHHHH
Q 048659 40 LATGKEEAKDVGL 52 (146)
Q Consensus 40 ~~~G~~EG~~~G~ 52 (146)
...||.||+|+|.
T Consensus 112 ~D~GF~eGRQyGR 124 (153)
T KOG0121|consen 112 WDAGFVEGRQYGR 124 (153)
T ss_pred ccccchhhhhhcC
Confidence 4568888888875
No 74
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=21.27 E-value=2.7e+02 Score=18.76 Aligned_cols=16 Identities=19% Similarity=0.202 Sum_probs=6.3
Q ss_pred HHhHHHhhHHHHHHHH
Q 048659 36 YAHGLATGKEEAKDVG 51 (146)
Q Consensus 36 ~~~G~~~G~~EG~~~G 51 (146)
++.|++.|+.=|--||
T Consensus 37 Qr~GkkiGRDiGIlYG 52 (70)
T PF04210_consen 37 QRAGKKIGRDIGILYG 52 (70)
T ss_pred HHHhHHhhhHHHHHHH
Confidence 3444444333333333
No 75
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=21.11 E-value=1.9e+02 Score=19.02 Aligned_cols=42 Identities=21% Similarity=0.281 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCCC---ChhhHHHHHHHHHHHHHHHH
Q 048659 85 ARVRKGIKQMEELIEKYPVNDP---ENESVQEIMGALRLKFRIIR 126 (146)
Q Consensus 85 ~r~~k~i~~L~~Li~~~p~~n~---~~~~~~~~l~kiR~Kfr~i~ 126 (146)
....|.|..+...-..-|+..- --.++.+.+..+|.|+|...
T Consensus 10 k~~kK~i~~v~~FF~~DPlGqkIa~l~kdw~~~~~~~r~KiR~~L 54 (64)
T PF05596_consen 10 KSVKKWIEEVRNFFYEDPLGQKIAQLAKDWNEICQEVRKKIRAAL 54 (64)
T ss_pred HhHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556555554444443211 11467788888899988754
No 76
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=21.06 E-value=2.2e+02 Score=17.66 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=20.1
Q ss_pred HHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHH
Q 048659 92 KQMEELIEKYPVNDPENESVQEIMGALRLKFRI 124 (146)
Q Consensus 92 ~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kfr~ 124 (146)
++|.+.+-.-.-.+.+...+...+.+||.|++.
T Consensus 28 ~~l~~~lw~~~~~~~~~~~l~~~i~~LR~~l~~ 60 (78)
T smart00862 28 EELLEAVWGDDDDDVDDNTLDVHISRLRKKLED 60 (78)
T ss_pred HHHHHHHcCCCCCCCccchHHHHHHHHHHHHhc
Confidence 445554442211123446799999999999875
No 77
>PRK15322 invasion protein OrgB; Provisional
Probab=20.88 E-value=1.7e+02 Score=23.72 Aligned_cols=10 Identities=40% Similarity=0.926 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 048659 26 THLKEGYDEG 35 (146)
Q Consensus 26 ~~~~eGy~eG 35 (146)
.+|++||++|
T Consensus 42 ~A~~~GYq~G 51 (210)
T PRK15322 42 YAYQEGYEQG 51 (210)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 78
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=20.86 E-value=1.7e+02 Score=21.36 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHHHHhC
Q 048659 87 VRKGIKQMEELIEKYPVNDPENESVQEIMGALRLKFRIIRAALG 130 (146)
Q Consensus 87 ~~k~i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kfr~i~~~lg 130 (146)
+..++..|..| ..|...++... +.=..||.|.+.|+.+|.
T Consensus 78 ~r~~~~~i~~L-~~F~~~d~~g~---d~G~~VR~ka~~i~~Ll~ 117 (123)
T cd03571 78 ARENLYIIRTL-KDFQYIDENGK---DQGINVREKAKEILELLE 117 (123)
T ss_pred HHHhHHHHHhh-ccceeeCCCCC---chhHHHHHHHHHHHHHhC
Confidence 45566666666 45665544322 233468999999999986
No 79
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=20.73 E-value=1.5e+02 Score=26.39 Aligned_cols=45 Identities=20% Similarity=0.326 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCChhhHHHHHHH-HHHHHHHHHHHhCCCCc
Q 048659 86 RVRKGIKQMEELIEKYPVNDPENESVQEIMGA-LRLKFRIIRAALGVKLE 134 (146)
Q Consensus 86 r~~k~i~~L~~Li~~~p~~n~~~~~~~~~l~k-iR~Kfr~i~~~lg~~~~ 134 (146)
++++....|++++..= ...+++....+. +..=||++|..||.+|.
T Consensus 176 ~Lr~~a~~LR~~~~~~----~~~~~l~~~k~~~l~~iy~il~~~lG~PP~ 221 (438)
T PF03051_consen 176 KLREYALELRKLVKAG----KSEEELRKLKEEMLAEIYRILAIYLGEPPE 221 (438)
T ss_dssp HHHHHHHHHHHHHHTT----TTCHHHHHHHHHHHHHHHHHHHHHH---SS
T ss_pred HHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3445556777777632 222344333332 34447999999999763
No 80
>PF03749 SfsA: Sugar fermentation stimulation protein; InterPro: IPR005224 The sugar fermentation stimulation protein is a probable regulatory factor involved in maltose metabolism. It contains a putative DNA-binding domain, and was isolated as a gene which enabled Escherichia coli W3110 (strain MK2001) to use maltose [].
Probab=20.68 E-value=96 Score=24.92 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhh-CC--------CCC--------CChhhHHHHHHHHHHH
Q 048659 80 PTRFSARVRKGIKQMEELIEK-YP--------VND--------PENESVQEIMGALRLK 121 (146)
Q Consensus 80 ~~~~s~r~~k~i~~L~~Li~~-~p--------~~n--------~~~~~~~~~l~kiR~K 121 (146)
|+..|.|..|||+.|.++++. .- ..+ .-|.+|-+.+.+++.+
T Consensus 135 PDApT~RG~kHL~eL~~l~~~G~ra~vlFvvqr~d~~~f~p~~~~Dp~fa~~l~~A~~~ 193 (215)
T PF03749_consen 135 PDAPTERGRKHLRELAELAEEGYRAAVLFVVQRPDAERFRPNREIDPEFAEALREAAEA 193 (215)
T ss_pred CCccchHHHHHHHHHHHHHhccCcEEEEEEEECCCCCEEeEChhcCHHHHHHHHHHHHC
Confidence 566789999999999999984 11 111 2246777877777643
No 81
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=20.49 E-value=3e+02 Score=18.91 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 048659 45 EEAKDVGLKHGFETGEEL 62 (146)
Q Consensus 45 ~EG~~~G~~~G~q~g~e~ 62 (146)
.-||..|.--|+-.|+-+
T Consensus 45 kvGRDiGIlYG~viGlli 62 (77)
T PRK01026 45 KVGRDIGILYGLVIGLLI 62 (77)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 334444444444444443
No 82
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=20.39 E-value=2.3e+02 Score=23.49 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHHHH
Q 048659 88 RKGIKQMEELIEKYPVNDPENESVQEIMGALRLKFRIIRAA 128 (146)
Q Consensus 88 ~k~i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kfr~i~~~ 128 (146)
.--+..+..|++.+|+. .+.+.+..+|.+|..+...
T Consensus 160 evLL~~ae~L~~vYP~~-----ga~eki~~Lr~~y~~l~~~ 195 (259)
T PF08657_consen 160 EVLLRGAEKLCNVYPLP-----GAREKIAALRQRYNQLSNS 195 (259)
T ss_pred HHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHHHHHHHH
Confidence 34567788888888876 5666666666666555443
No 83
>PRK11087 oxidative stress defense protein; Provisional
Probab=20.27 E-value=1.2e+02 Score=24.18 Aligned_cols=24 Identities=8% Similarity=0.113 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCC
Q 048659 109 ESVQEIMGALRLKFRIIRAALGVK 132 (146)
Q Consensus 109 ~~~~~~l~kiR~Kfr~i~~~lg~~ 132 (146)
+-+.+.++..|.|...++..+|.+
T Consensus 152 ~al~~Av~dAr~kA~~~A~~~G~~ 175 (231)
T PRK11087 152 KARKAAIKDAIQQAQSLAKGFGEK 175 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 457899999999999999999975
Done!