Query 048659
Match_columns 146
No_of_seqs 142 out of 267
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 20:34:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048659.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/048659hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u5ta1 a.4.5.54 (A:20-164) Va 32.7 9.4 0.00069 26.3 1.8 45 86-133 12-56 (145)
2 d1k1fa_ a.147.1.1 (A:) Bcr-Abl 31.2 37 0.0027 20.1 4.2 9 67-75 6-14 (67)
3 d1yt3a2 a.60.8.3 (A:295-375) R 29.6 20 0.0015 21.6 2.9 26 110-135 8-33 (81)
4 d2pv7a1 a.100.1.12 (A:244-371) 28.3 53 0.0038 20.8 5.2 56 66-126 57-114 (128)
5 d1ax8a_ a.26.1.1 (A:) Leptin ( 27.7 65 0.0047 21.8 5.6 50 85-136 50-99 (144)
6 d1u5pa1 a.7.1.1 (A:1662-1771) 26.8 59 0.0043 19.2 5.2 41 90-130 57-98 (110)
7 d1u5pa2 a.7.1.1 (A:1772-1872) 25.2 47 0.0034 19.3 4.2 40 91-130 54-94 (101)
8 d7mdha2 d.162.1.1 (A:198-385) 24.7 28 0.002 24.1 3.3 44 99-142 143-186 (188)
9 d1p2fa1 a.4.6.1 (A:121-217) Re 22.4 29 0.0021 20.8 2.7 19 106-124 59-77 (97)
10 d1vkja_ c.37.1.5 (A:) Heparan 22.1 32 0.0023 23.4 3.2 45 91-135 148-192 (258)
No 1
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.71 E-value=9.4 Score=26.31 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCC
Q 048659 86 RVRKGIKQMEELIEKYPVNDPENESVQEIMGALRLKFRIIRAALGVKL 133 (146)
Q Consensus 86 r~~k~i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kfr~i~~~lg~~~ 133 (146)
.+.+.++.+++.++.|-.....+- ..--..|+||..+|+.+|+.|
T Consensus 12 ql~~QL~vF~~~L~~FA~kH~~eI---~~np~FR~~F~~MC~~iGVDP 56 (145)
T d1u5ta1 12 ELRDQLMVFQERLVEFAKKHNSEL---QASPEFRSKFMHMCSSIGIDP 56 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTT---TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHh---hcCHHHHHHHHHHHHHhCCCh
Confidence 356677777777776654311110 000136999999999999965
No 2
>d1k1fa_ a.147.1.1 (A:) Bcr-Abl oncoprotein oligomerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.24 E-value=37 Score=20.10 Aligned_cols=9 Identities=22% Similarity=0.911 Sum_probs=6.0
Q ss_pred HHHHHHHHh
Q 048659 67 GCVDVWNSA 75 (146)
Q Consensus 67 G~~~~w~~~ 75 (146)
|++.+|+.-
T Consensus 6 gF~eaW~aq 14 (67)
T d1k1fa_ 6 GFAEAWKAQ 14 (67)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 667777764
No 3
>d1yt3a2 a.60.8.3 (A:295-375) Ribonuclease D {Escherichia coli [TaxId: 562]}
Probab=29.61 E-value=20 Score=21.61 Aligned_cols=26 Identities=8% Similarity=0.111 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCcC
Q 048659 110 SVQEIMGALRLKFRIIRAALGVKLEY 135 (146)
Q Consensus 110 ~~~~~l~kiR~Kfr~i~~~lg~~~~~ 135 (146)
.|-..++.||+..+.+|..+|+.++.
T Consensus 8 ~yK~~~K~lk~~v~~~Ae~~~Iapel 33 (81)
T d1yt3a2 8 GYRKAFKAIKSLITDVSETHKISAEL 33 (81)
T ss_dssp THHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 47789999999999999999998654
No 4
>d2pv7a1 a.100.1.12 (A:244-371) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}
Probab=28.35 E-value=53 Score=20.83 Aligned_cols=56 Identities=7% Similarity=0.128 Sum_probs=29.8
Q ss_pred hHHHHHHHHhhhhCCCCCC--HHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHH
Q 048659 66 KGCVDVWNSAIRIAPTRFS--ARVRKGIKQMEELIEKYPVNDPENESVQEIMGALRLKFRIIR 126 (146)
Q Consensus 66 ~G~~~~w~~~~~~~~~~~s--~r~~k~i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kfr~i~ 126 (146)
.+=-..|..+...++.... .+....+..|.++|+ +...+.+.+.+.++|.-|+-.|
T Consensus 57 ~~~p~lw~dI~~~N~~~~~~l~~~~~~l~~l~~~i~-----~~D~~~l~~~~~~a~~~~~~~~ 114 (128)
T d2pv7a1 57 AQDAELYADIIMDKSENLAVIETLKQTYDEALTFFE-----NNDRQGFIDAFHKVRDWFGDYS 114 (128)
T ss_dssp TSCHHHHHHHHC----CHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHTTHH
T ss_pred CCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhH
Confidence 4445688888866664321 122334444444444 4445678888888887765443
No 5
>d1ax8a_ a.26.1.1 (A:) Leptin (obesity protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.67 E-value=65 Score=21.82 Aligned_cols=50 Identities=8% Similarity=0.203 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCCcCC
Q 048659 85 ARVRKGIKQMEELIEKYPVNDPENESVQEIMGALRLKFRIIRAALGVKLEYD 136 (146)
Q Consensus 85 ~r~~k~i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kfr~i~~~lg~~~~~~ 136 (146)
+.....+..+..++.+.|..| ...+...+..+|..++.++++.+.+.+-.
T Consensus 50 ssmdqTL~~yQ~iL~sLp~~~--v~QI~nDlenLr~lL~~lats~~Cp~~~~ 99 (144)
T d1ax8a_ 50 SKMDQTLAVYQQILTSMPSRN--VIQISNDLENLRDLLHVLAFSKSCHLPEA 99 (144)
T ss_dssp HHHHHHHHHHHHHHHTSCCHH--HHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHHHHhcCChhh--HHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 456667788888888887643 34678889999999999999999988653
No 6
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=26.81 E-value=59 Score=19.20 Aligned_cols=41 Identities=10% Similarity=0.197 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhCCCCCCC-hhhHHHHHHHHHHHHHHHHHHhC
Q 048659 90 GIKQMEELIEKYPVNDPE-NESVQEIMGALRLKFRIIRAALG 130 (146)
Q Consensus 90 ~i~~L~~Li~~~p~~n~~-~~~~~~~l~kiR~Kfr~i~~~lg 130 (146)
.++.|....+.+-..+|. .+.+...+..|..++..++..+.
T Consensus 57 ~i~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~ 98 (110)
T d1u5pa1 57 RLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAA 98 (110)
T ss_dssp HHHHHHHHHHHHHTCSSSCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443 36788899999999988887764
No 7
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=25.20 E-value=47 Score=19.32 Aligned_cols=40 Identities=10% Similarity=0.187 Sum_probs=25.1
Q ss_pred HHHHHHHHhhCCCCCC-ChhhHHHHHHHHHHHHHHHHHHhC
Q 048659 91 IKQMEELIEKYPVNDP-ENESVQEIMGALRLKFRIIRAALG 130 (146)
Q Consensus 91 i~~L~~Li~~~p~~n~-~~~~~~~~l~kiR~Kfr~i~~~lg 130 (146)
++.|.+..+.+--.+| ....+...+..|+.++..++..+.
T Consensus 54 ~~~l~~~~~~l~~~~~~~~~~I~~~~~~l~~~w~~L~~~~~ 94 (101)
T d1u5pa2 54 IQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLAA 94 (101)
T ss_dssp HHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333 346788999999999988887654
No 8
>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}
Probab=24.75 E-value=28 Score=24.11 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=33.9
Q ss_pred hhCCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCC
Q 048659 99 EKYPVNDPENESVQEIMGALRLKFRIIRAALGVKLEYDGYPKPI 142 (146)
Q Consensus 99 ~~~p~~n~~~~~~~~~l~kiR~Kfr~i~~~lg~~~~~~~~p~~~ 142 (146)
..+++++.+.+.++...+-++.-...|..+||..-.|..+|+.-
T Consensus 143 ~~l~L~~~e~~~l~~S~~eL~~e~~~v~~Llg~~~~~~~~~~~~ 186 (188)
T d7mdha2 143 TDVSNDDFLWERIKKSEAELLAEKKCVAHLTGEGNAYCDVPEDT 186 (188)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHTHHHHTSSSCCCCCCSTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCccc
Confidence 34555554556788888889988889999999999998777643
No 9
>d1p2fa1 a.4.6.1 (A:121-217) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}
Probab=22.36 E-value=29 Score=20.82 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=15.3
Q ss_pred CChhhHHHHHHHHHHHHHH
Q 048659 106 PENESVQEIMGALRLKFRI 124 (146)
Q Consensus 106 ~~~~~~~~~l~kiR~Kfr~ 124 (146)
.++..+...+.+||.|++.
T Consensus 59 ~~~~~l~~~I~rLR~kl~~ 77 (97)
T d1p2fa1 59 VSPRVVDTVIKRIRKAIED 77 (97)
T ss_dssp CCTHHHHHHHHHHHHHHCS
T ss_pred cCCcccccHHHHHHHHHhh
Confidence 3456799999999999865
No 10
>d1vkja_ c.37.1.5 (A:) Heparan sulfate 3-O-sulfotransferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.09 E-value=32 Score=23.42 Aligned_cols=45 Identities=7% Similarity=0.069 Sum_probs=35.7
Q ss_pred HHHHHHHHhhCCCCCCChhhHHHHHHHHHHHHHHHHHHhCCCCcC
Q 048659 91 IKQMEELIEKYPVNDPENESVQEIMGALRLKFRIIRAALGVKLEY 135 (146)
Q Consensus 91 i~~L~~Li~~~p~~n~~~~~~~~~l~kiR~Kfr~i~~~lg~~~~~ 135 (146)
.+.+....+.||..+--.-.+++.+..-..-++.||.-||+++.+
T Consensus 148 ~~~l~~~~~~~~~~~il~i~yEdl~~~p~~~~~~i~~FLgl~~~~ 192 (258)
T d1vkja_ 148 HAHMLNWLRFFPLGHIHIVDGDRLIRDPFPEIQKVERFLKLSPQI 192 (258)
T ss_dssp HHHHHHHHTTSCGGGEEEEEHHHHHHCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHhcCCcceEEEEHHHhhhhHHHHHHHHHHHcCCCccc
Confidence 356677777887655555778999999999999999999998654
Done!