BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048660
(213 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 2 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGFGF---- 53
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
II+D+ MP M G ELLK I+ S +PV+++++E I + + GA Y+VKP
Sbjct: 54 ---IISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 59/120 (49%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGFGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
II+D+ MP M G ELLK I+ S +PV+++++E I + + GA Y+VKP
Sbjct: 53 ---IISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 11/116 (9%)
Query: 94 LHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLI 152
+ +L VDDS R++I+ L ++ V E G A + L + + ++
Sbjct: 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTK----------VL 55
Query: 153 ITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
ITD+ MP M G +L+KK++ S F+E+P++++++E ++ + L+ G YIVKP
Sbjct: 56 ITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKP 111
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 11/116 (9%)
Query: 94 LHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLI 152
+ +L VDDS R++I+ L ++ V E G A + L + + ++
Sbjct: 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTK----------VL 55
Query: 153 ITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
ITD+ MP M G +L+KK++ S F+E+P++++++E ++ + L+ G YIVKP
Sbjct: 56 ITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKP 111
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 2 SDKELKFLVVDDGGTGRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 53
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 54 ---VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGFGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
II D+ MP M G ELLK I+ S +PV+++++E I + + GA Y+VKP
Sbjct: 53 ---IICDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 2 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 53
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV++++SE I + + GA Y+VKP
Sbjct: 54 ---VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVKP 110
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 3 SDKELKFLVVDDFSTGRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 54
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 55 ---VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 111
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 65/122 (53%), Gaps = 4/122 (3%)
Query: 91 SKELHVLAVDDSYVDRKLIERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFDALK 148
S + ++ ++D +LIE+ ++ + ++ A GT AL YL D + V A +
Sbjct: 2 SLSVTIVXIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVS--AGR 59
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
L++ D +P TG ++LK +KE+ R PVVI+++ D +I C + GA YI KP
Sbjct: 60 AQLVLLDLNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKP 119
Query: 209 VK 210
V
Sbjct: 120 VN 121
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
Query: 91 SKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKV 149
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 3 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF----- 53
Query: 150 NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 54 --VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKP 110
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 53 ---VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 2 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 53
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 54 ---VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 53 ---VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 2 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 53
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 54 ---VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 2 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 53
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 54 ---VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVVKP 110
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 2 SDKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 53
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 54 ---VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 53 ---VISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 12/119 (10%)
Query: 91 SKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKV 149
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 2 DKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF----- 52
Query: 150 NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 53 --VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++E + + + GA Y+VKP
Sbjct: 53 ---VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKP 109
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 11/116 (9%)
Query: 94 LHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLI 152
+ +L VDDS R++I+ L ++ V E G A + L + + ++
Sbjct: 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTK----------VL 55
Query: 153 ITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
IT + MP M G +L+KK++ S F+E+P++++++E ++ + L+ G YIVKP
Sbjct: 56 ITAWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKP 111
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 2 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 53
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 54 ---VISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++E I + + GA ++VKP
Sbjct: 53 ---VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKP 109
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 2 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 53
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV++++ E I + + GA Y+VKP
Sbjct: 54 ---VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVVKP 110
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++ I + + GA Y+VKP
Sbjct: 53 ---VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKP 109
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 93 ELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNL 151
EL L VDD+ R+++ LL ++ V E G AL L + GF
Sbjct: 1 ELKFLVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF------- 49
Query: 152 IITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV++ ++E I + + GA Y+VKP
Sbjct: 50 VISDWNMPNMDGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKP 106
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 2 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 53
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV++++ E I + + GA Y+VKP
Sbjct: 54 ---VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVVKP 110
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++ +E I + + GA Y+VKP
Sbjct: 53 ---VISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++ I + + GA Y+VKP
Sbjct: 53 ---VISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVKP 109
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++ I + + GA Y+VKP
Sbjct: 53 ---VISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKP 109
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 13/120 (10%)
Query: 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNL 151
+ + +L DD +R +++RLL+ + KV V + L + + +DA
Sbjct: 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAM------AEEDYDA----- 61
Query: 152 IITDYTMPGMTGYELLKKIK--ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209
+I D MPGM G ++LK+++ ++S R PVV++S++ I +C + GA ++ KPV
Sbjct: 62 VIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPV 121
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 5 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 56
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV++++++ I + + GA Y+VKP
Sbjct: 57 ---VISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVKP 113
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 12/117 (10%)
Query: 93 ELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNL 151
EL L VDD+ R++ LL ++ V E G AL L + GF
Sbjct: 1 ELKFLVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF------- 49
Query: 152 IITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 50 VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 106
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 5 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 56
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV++++++ I + + GA Y+VKP
Sbjct: 57 ---VISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVVKP 113
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++ +E I + + GA ++VKP
Sbjct: 53 ---VISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKP 109
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 5 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 56
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++ I + + GA Y+VKP
Sbjct: 57 ---VISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKP 113
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVDDQSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++ I + + GA Y+VKP
Sbjct: 53 ---VISDWKMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKP 109
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VD R+++ LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVDKFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 53 ---VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++ I + + GA Y+VKP
Sbjct: 53 ---VISDWMMPNMDGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVKP 109
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 2 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 53
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+ + MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 54 ---VISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+ + MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 53 ---VISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L V D R+++ LL ++ V E G AL L + GF
Sbjct: 3 SDKELKFLVVADFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 54
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 55 ---VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 111
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 5 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 56
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++ I + + GA Y+VKP
Sbjct: 57 ---VISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKP 113
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 1 SDKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+ + MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 53 ---VISAWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 92 KELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVN 150
KEL L VD R+++ LL ++ V E G AL L + GF
Sbjct: 2 KELKFLVVDAFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF------ 51
Query: 151 LIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 52 -VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 108
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 88 AECSKELHVLAVDDSYVDRKLIERLLQ-ISSCKVTAVESGTRALQYLGLDGEQSNVGFDA 146
A +K + +L VDD R++++ LL+ + + G AL L ++ + F
Sbjct: 7 AILNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPML----KKGDFDF-- 60
Query: 147 LKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206
++TD+ MPGM G +LLK I+ + +PV+++++E QI + G YIV
Sbjct: 61 -----VVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIV 115
Query: 207 KP 208
KP
Sbjct: 116 KP 117
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+ + MP M G ELLK I+ +PV+++ +E I + + GA Y+VKP
Sbjct: 53 ---VISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKP 109
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VDD R+++ LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+ + MP M G ELLK I+ +PV+++ +E I + + GA ++VKP
Sbjct: 53 ---VISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKP 109
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 96 VLAVDDSYVDRKLIERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLII 153
+L V+DS D +RLLQ + +G +AL +L G N A + +I+
Sbjct: 9 LLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDI-APRPAVIL 67
Query: 154 TDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212
D +PG G E+L++IK+ V +++PVVIM++ I+ C YIVKP+++
Sbjct: 68 LDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEID 126
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L V + + + LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVDALNKL----QAGGYGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ MP M G ELLK I+ +PV+++++E I + + GA Y+VKP
Sbjct: 53 ---VISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 63/115 (54%), Gaps = 13/115 (11%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
+L +DD V R+ + L+ S+ KV +G + LQ F++ + +L+I D
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQI-----------FESEQPDLVICD 56
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVK 210
P + G EL+++I++++ E P++++S V++ L GA +Y++KP++
Sbjct: 57 LRXPQIDGLELIRRIRQTA--SETPIIVLSGAGVMSDAVEALRLGAADYLIKPLE 109
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
KEL L VD R+++ LL ++ V E G AL L + GF
Sbjct: 1 ADKELKFLVVDKFSTXRRIVRNLLKELGFNNVEEAEDGVDALNKL----QAGGYGF---- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+I+D+ P G ELLK I+ +PV+ +++E I + + GA ++VKP
Sbjct: 53 ---VISDWNXPNXDGLELLKTIRADGAXSALPVLXVTAEAKKENIIAAAQAGASGWVVKP 109
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 62/115 (53%), Gaps = 13/115 (11%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
+L +DD V R+ + L+ S+ KV +G + LQ F++ + +L+I D
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQI-----------FESEQPDLVICD 56
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVK 210
P + G EL+++I++++ E P++++S V + L GA +Y++KP++
Sbjct: 57 LRXPQIDGLELIRRIRQTA--SETPIIVLSGAGVXSDAVEALRLGAADYLIKPLE 109
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
V VDD R ++ER L + T E+G L L + +++++D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA-----------SKTPDVLLSD 54
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLSD 213
MPGM G LLK+IK+ +PV+IM++ L S ++GA +Y+ KP + +
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
V VDD R ++ER L + T E+G L L + +++++D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA-----------SKTPDVLLSD 54
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLSD 213
MPGM G LLK+IK+ +PV+IM++ L S ++GA +Y+ KP + +
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 80/180 (44%), Gaps = 29/180 (16%)
Query: 40 GAPTQRFP--FAYSLTQTHNILTKTHQRLVKEKKFKETNRGFPFWAMATVAECSKELHVL 97
G P ++ P + +S+ H + + + E + + P + + ++ +L
Sbjct: 76 GIPLEKAPGEWVHSVAAPHELPALLARIYLIEMESDDPANALP--STDKAVSDNDDMMIL 133
Query: 98 AVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKV------NL 151
VDD ++R+L+ L LG + +N G DAL V ++
Sbjct: 134 VVDDHPINRRLL-----------------ADQLGSLGYQCKTANDGVDALNVLSKNHIDI 176
Query: 152 IITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKL 211
+++D MP M GY L ++I++ + +PV+ +++ + + CLE G + + KPV L
Sbjct: 177 VLSDVNMPNMDGYRLTQRIRQLGL--TLPVIGVTANALAEEKQRCLESGMDSCLSKPVTL 234
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
V VDD R ++ER L + T E+G L L + +++++D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA-----------SKTPDVLLSD 54
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLSD 213
MPGM G LLK+IK+ +PV+IM++ L S ++GA +Y+ KP + +
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
+L VDD + +L+E L +V+ G AL D ++I+ D
Sbjct: 5 ILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD-----------LPDIILLD 53
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209
MPGM G+ + +K+K+ R +PVV++++ D LE GA +++ KP+
Sbjct: 54 VMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 107
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
V+L+I + G ++ R++PV+ M D ++ LE G + + +P
Sbjct: 196 VDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRP 255
Query: 209 V 209
+
Sbjct: 256 I 256
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIIT 154
+L VDD + +L+E L +V+ G AL D ++I+
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD-----------LPDIILL 51
Query: 155 DYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209
D MPGM G+ + +K+K+ R +PVV++++ D LE GA +++ KP+
Sbjct: 52 DVMMPGMDGFTVCRKLKDDPTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPI 106
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
V+L+I + G ++ R++PV+ M D ++ LE G + + +P
Sbjct: 195 VDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRP 254
Query: 209 V 209
+
Sbjct: 255 I 255
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
+L V+DS + ++ +L+ + + V +G A+++L L + +LII+D
Sbjct: 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLT-----------RPDLIISD 58
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVK 210
MP M GY L + +K R +PV++++ + LE GA+++I KP K
Sbjct: 59 VLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCK 113
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
VL VDDS V RK++ L+ +V E+G AL+ L +LI+ D
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS-----------EFTPDLIVLD 53
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
MP M G+ +LKK++E ++ +PV++++++ L GA + + KP
Sbjct: 54 IMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKP 106
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 62/128 (48%), Gaps = 25/128 (19%)
Query: 91 SKELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKV- 149
+ ++ +L VDD ++R+L+ L LG + +N G DAL V
Sbjct: 6 NDDMMILVVDDHPINRRLL-----------------ADQLGSLGYQCKTANDGVDALNVL 48
Query: 150 -----NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204
+++++D MP M GY L ++I++ + +PV+ +++ + + CLE G +
Sbjct: 49 SKNHIDIVLSDVNMPNMDGYRLTQRIRQLGL--TLPVIGVTANALAEEKQRCLESGMDSC 106
Query: 205 IVKPVKLS 212
+ KPV L
Sbjct: 107 LSKPVTLD 114
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 13/116 (11%)
Query: 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIIT 154
+L V+D V R L++ G AL+ LG GF +L+I
Sbjct: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG--------GFTP---DLMIC 57
Query: 155 DYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVK 210
D MP M G +LL+ I+ + PV+++S+ + + I L G E+ ++KPVK
Sbjct: 58 DIAMPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
pdb|1JLK|B Chain B, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
Length = 147
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 6/120 (5%)
Query: 96 VLAVDDSYVDRKLIERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLII 153
+L V+DS D +L++ +L+ S+ ++ + G A+ +L GE N + + NLI+
Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYEN----SPRPNLIL 66
Query: 154 TDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLSD 213
D +P G E+L +IK++ + +PVV++++ + + E Y+ K L D
Sbjct: 67 LDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKD 126
>pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial Phytochrome, Rcp1
pdb|1I3C|B Chain B, Response Regulator For Cyanobacterial Phytochrome, Rcp1
Length = 149
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 6/120 (5%)
Query: 96 VLAVDDSYVDRKLIERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLII 153
+L V+DS D +L++ +L+ S+ ++ + G A +L GE N + + NLI+
Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAXAFLQQQGEYEN----SPRPNLIL 66
Query: 154 TDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLSD 213
D +P G E+L +IK++ + +PVV++++ + + E Y+ K L D
Sbjct: 67 LDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKD 126
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
V VDD R ++ER L + T E+G L L + +++++
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA-----------SKTPDVLLSX 54
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLSD 213
MPGM G LLK+IK+ +PV+IM++ L S ++GA +Y+ KP + +
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%)
Query: 150 NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+LI+ D+ +PG +G + +K +K S+ R++PVV++++ LE GA++YI KP
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKP 106
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%)
Query: 150 NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+LI+ D+ +PG +G + +K +K S+ R++PVV++++ LE GA++YI KP
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKP 106
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 11/118 (9%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
+L +DD + I+ LL+I +V S T L+ E N ++++ITD
Sbjct: 6 ILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFT---ENCN------SIDVVITD 56
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLSD 213
MP ++G ++L++IK+ + + V+I++ L ++EGA EY+ KPV D
Sbjct: 57 MKMPKLSGMDILREIKK--ITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQD 112
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
V +DD RK +++ L+++ V++ S T AL G A ++I+D
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEAL-----------AGLSADFAGIVISD 54
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
MPGM G L +KI ++ ++P+++++ + +++GA ++I KP
Sbjct: 55 IRMPGMDGLALFRKIL--ALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKP 105
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
V +DD RK +++ L+++ V++ S T AL G A ++I+D
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEAL-----------AGLSADFAGIVISD 54
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
MPGM G L +KI ++ ++P+++++ + +++GA ++I KP
Sbjct: 55 IRMPGMDGLALFRKIL--ALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKP 105
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
VL VDDS V RK++ L+ +V E+G AL+ L +LI+
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS-----------EFTPDLIVLX 53
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
MP M G+ +LKK++E ++ +PV++++++ L GA + + KP
Sbjct: 54 IMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKP 106
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 60/113 (53%), Gaps = 11/113 (9%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
+L VDD + +E +L+ + +V SG ALQ + N+ DAL I D
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQI-----YKNLP-DAL-----ICD 55
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+PG+ GY L K++++ + + +P++ ++++ ++ + E GA +Y+ KP
Sbjct: 56 VLLPGIDGYTLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKP 108
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 38/59 (64%)
Query: 150 NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+LI+ ++ +PG +G + +K +K S+ R++PVV++++ LE GA++YI KP
Sbjct: 48 DLILLEWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKP 106
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 46/75 (61%), Gaps = 7/75 (9%)
Query: 136 DGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDS 195
DG + FD ++++ D +PGM+G ++ K+++ S VPV+++++ D ++ID
Sbjct: 36 DGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARS---SVPVIMVTARD--SEIDK 90
Query: 196 C--LEEGAEEYIVKP 208
LE GA++Y+ KP
Sbjct: 91 VVGLELGADDYVTKP 105
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 136 DGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDS 195
DG Q+ L+ +L++ D +PGM G ++ + ++ S VP+V+++++ +
Sbjct: 37 DGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADS---GVPIVMLTAKTDTVDVVL 93
Query: 196 CLEEGAEEYIVKPVK 210
LE GA++YI+KP K
Sbjct: 94 GLESGADDYIMKPFK 108
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 95 HVLAVDDSYVDRKL-IERLLQISSCKVTAVESGTRALQYL--GLDGEQSNVGFDALKVNL 151
VL VDD+++ RK+ +L ++ +V +SG AL+ + GL + D L +
Sbjct: 63 RVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDY 122
Query: 152 IITDYTMPGMTGYELLKKIK--ESSVFREVPVVIMSSED 188
I D MP M GYE ++I+ E S P++ +S D
Sbjct: 123 IFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHD 161
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium
Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 12/120 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLI-ERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK 148
++++ VL VDD R L+ + L Q+ ++TA G + ++ + +
Sbjct: 3 LAEKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPH---------- 52
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+L+I+D+ MP M G LL+ ++ + ++ +I++++ + GA + KP
Sbjct: 53 -HLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKP 111
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 41/72 (56%)
Query: 136 DGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDS 195
D +Q+ + +K +I+ D MPG+ G LL + + R++P++++S+++ T +
Sbjct: 51 DPQQAVAVANQIKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSA 110
Query: 196 CLEEGAEEYIVK 207
GA +Y+VK
Sbjct: 111 AFAAGANDYLVK 122
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 18/116 (15%)
Query: 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIIT 154
H+L V+D V R ++ + + V G Q L +NL+I
Sbjct: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-----------EYDINLVIM 53
Query: 155 DYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSC--LEEGAEEYIVKP 208
D +PG G L ++++E + V ++ ++ D ++D LE GA++YI KP
Sbjct: 54 DINLPGKNGLLLARELREQA---NVALMFLTGRD--NEVDKILGLEIGADDYITKP 104
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 18/116 (15%)
Query: 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIIT 154
H+L V+D V R ++ + + V G Q L +NL+I
Sbjct: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEXHQILS-----------EYDINLVIX 53
Query: 155 DYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSC--LEEGAEEYIVKP 208
D +PG G L ++++E + V + ++ D ++D LE GA++YI KP
Sbjct: 54 DINLPGKNGLLLARELREQA---NVALXFLTGRD--NEVDKILGLEIGADDYITKP 104
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 147 LKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSS-EDVLTQIDSCLEEGAEEYI 205
+K +I+ D MPG+ G L+++ + + + R++P++++S+ ED L + + GA +Y+
Sbjct: 60 IKPTVILQDLVMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIK-SAAFAAGANDYL 118
Query: 206 VK 207
VK
Sbjct: 119 VK 120
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 13/120 (10%)
Query: 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLII 153
++VL ++D V R L+E L + KV + E G A + L S F N+++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLL------SEKHF-----NVVL 49
Query: 154 TDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLSD 213
+P + G E+LK IKE S E V++++ + ++ GA +++ KP L +
Sbjct: 50 LXLLLPDVNGLEILKWIKERSP--ETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEE 107
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 22/125 (17%)
Query: 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK----- 148
+ +L V+D++V++++I+R+L + + +E L DG+++ FD +K
Sbjct: 2 VKILVVEDNHVNQEVIKRMLNLEG--IENIE--------LACDGQEA---FDKVKELTSK 48
Query: 149 ---VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205
N+I D MP + G K I+ + P+V +++ + I CLE G ++
Sbjct: 49 GENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTS-PIVALTAFADDSNIKECLESGMNGFL 107
Query: 206 VKPVK 210
KP+K
Sbjct: 108 SKPIK 112
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 62/125 (49%), Gaps = 22/125 (17%)
Query: 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALK----- 148
+ +L V+D++V++++I+R+L + + +E L DG+++ FD +K
Sbjct: 3 VKILVVEDNHVNQEVIKRMLNLEG--IENIE--------LACDGQEA---FDKVKELTSK 49
Query: 149 ---VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205
N+I D MP + G K I+ + P+V +++ + I CLE G ++
Sbjct: 50 GENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTS-PIVALTAFADDSNIKECLESGMNGFL 108
Query: 206 VKPVK 210
KP+K
Sbjct: 109 SKPIK 113
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 48/77 (62%), Gaps = 7/77 (9%)
Query: 134 GLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQI 193
+G ++ F+A + ++II D +P + G E+ K I+++S VP++++S++D ++
Sbjct: 31 AFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTS---SVPILMLSAKD--SEF 85
Query: 194 DSC--LEEGAEEYIVKP 208
D LE GA++Y+ KP
Sbjct: 86 DKVIGLELGADDYVTKP 102
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
VL V+D+ ++ KL LL+ + G AL + N K +LI+ D
Sbjct: 4 VLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSI-----AREN------KPDLILMD 52
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209
+P ++G E+ K +KE +PVV +++ + + E G E YI KP+
Sbjct: 53 IQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPI 106
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 150 NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+LI+ + +PG +G + +K +K S+ R++PVV++++ LE GA++ I KP
Sbjct: 48 DLILLAWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKP 106
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%)
Query: 150 NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+LI+ + +PG +G + +K ++ S+ R++PVV++++ LE GA++ I KP
Sbjct: 48 DLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKP 106
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 14/119 (11%)
Query: 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIIT 154
+VL V+D R+ + L+ +V E+ R L K +LII
Sbjct: 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-----------TRKPDLIIL 51
Query: 155 DYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLSD 213
D +P G E ++ +++ S VPV+++S+ + + L+ GA++Y+ KP + +
Sbjct: 52 DLGLPDGDGIEFIRDLRQWSA---VPVIVLSARSEESDKIAALDAGADDYLSKPFGIGE 107
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
Length = 147
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 113 LQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKV------NLIITDYTMPGMTGYEL 166
+ + ++ A+ + AL G D Q +A+ V +LIIT+ MP ++G +L
Sbjct: 11 IMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDL 70
Query: 167 LKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209
+K++ +PV+ +S + L+ G ++I KPV
Sbjct: 71 FNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPV 113
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 96 VLAVDDSYVDRKLIERLLQISS--CKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLII 153
VL V+D+ D LI R+L C++ V++G +AL + +Q+ K +LII
Sbjct: 8 VLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQV----QQA-------KYDLII 56
Query: 154 TDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVK 207
D +P G+E+ +++ + P+VI++ + C GA + K
Sbjct: 57 LDIGLPIANGFEVXSAVRKPGANQHTPIVILTDNVSDDRAKQCXAAGASSVVDK 110
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
+L VDD Y R L+ + + +G +AL + + + +L++ D
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKE-----------RPDLVLLD 54
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLSD 213
+PGM G E+LK++K + + V+IM++ L I E GA + KP + +
Sbjct: 55 MKIPGMDGIEILKRMK--VIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDE 110
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
+L VDD Y R L+ + + +G +AL + + + +L++ D
Sbjct: 8 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKE-----------RPDLVLLD 56
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLSD 213
+PGM G E+LK++K + + V+IM++ L I E GA + KP + +
Sbjct: 57 MKIPGMDGIEILKRMK--VIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDE 112
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 13/124 (10%)
Query: 90 CSKELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKV 149
+ E VL VDD +L+ L+ +V +G +AL +
Sbjct: 20 TTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA-----------RETRP 68
Query: 150 NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209
+ +I D PG G+ +L++++ + + P + +++ D L + L G ++Y+ KP
Sbjct: 69 DAVILDVXXPGXDGFGVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPF 126
Query: 210 KLSD 213
L +
Sbjct: 127 SLEE 130
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 47/77 (61%), Gaps = 7/77 (9%)
Query: 134 GLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQI 193
+G ++ F+A + ++II +P + G E+ K I+++S VP++++S++D ++
Sbjct: 31 AFNGREALEQFEAEQPDIIILXLMLPEIDGLEVAKTIRKTS---SVPILMLSAKD--SEF 85
Query: 194 DSC--LEEGAEEYIVKP 208
D LE GA++Y+ KP
Sbjct: 86 DKVIGLELGADDYVTKP 102
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 150 NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+LI+ D +P G +++++++++S P++++++ D + + L GA++Y++KP
Sbjct: 83 DLILLDLGLPDFDGGDVVQRLRKNSAL---PIIVLTARDTVEEKVRLLGLGADDYLIKP 138
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 109 IERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168
+ER L++S +V G AL+ N + + I+ D MP + G ++
Sbjct: 23 LERGLRLSGFEVATAVDGAEALRS-----ATEN------RPDAIVLDINMPVLDGVSVVT 71
Query: 169 KIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLSD 213
++ ++ +VPV ++S+ + + LE GA++Y+VKP L++
Sbjct: 72 ALR--AMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAE 114
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
+L VDD IER+L+ +V +G A + + ++ D
Sbjct: 9 ILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDA-----------GIKLSTFEPAIMTLD 57
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+MP + G ++++ ++++ V + ++++S D ++ + EGA++Y+ KP
Sbjct: 58 LSMPKLDGLDVIRSLRQNKVANQPKILVVSGLDK-AKLQQAVTEGADDYLEKP 109
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
+L VDD Y R L+ + + +G +AL + + + +L++ D
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKE-----------RPDLVLLD 54
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLSD 213
+PGM G E+LK++K + + V+IM++ L I E GA KP + +
Sbjct: 55 MKIPGMDGIEILKRMK--VIDENIRVIIMTAYGELDMIQESKELGALTAFAKPFDIDE 110
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
+L VDD Y R L+ + + +G +AL + + + +L++ D
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKE-----------RPDLVLLD 54
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLSD 213
+PGM G E+LK++K + + V+IM++ L E GA + KP + +
Sbjct: 55 MKIPGMDGIEILKRMK--VIDENIRVIIMTAYGELDMAQESKELGALTHFAKPFDIDE 110
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
+L VDD Y R L+ + + +G +AL + + + +L++ D
Sbjct: 6 ILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIVTKE-----------RPDLVLLD 54
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLSD 213
+PGM G E+ K++K + + V+IM++ L I E GA + KP + +
Sbjct: 55 MKIPGMDGIEIAKRMK--VIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDE 110
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 13/120 (10%)
Query: 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLII 153
++VL ++D V R L+E L + KV + E G A + L S F N+++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLL------SEKHF-----NVVL 49
Query: 154 TDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLSD 213
D +P + G E+LK IKE S E V++++ + ++ GA +++ KP L +
Sbjct: 50 LDLLLPDVNGLEILKWIKERSP--ETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEE 107
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 47/75 (62%), Gaps = 7/75 (9%)
Query: 136 DGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDS 195
DG ++ + L+ +LI+ D +P G E+ +++++ ++P+++++++D ++ID
Sbjct: 34 DGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKY---DMPIIMLTAKD--SEIDK 88
Query: 196 C--LEEGAEEYIVKP 208
LE GA++Y+ KP
Sbjct: 89 VIGLEIGADDYVTKP 103
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 47/75 (62%), Gaps = 7/75 (9%)
Query: 136 DGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDS 195
DG ++ + L+ +LI+ D +P G E+ +++++ ++P+++++++D ++ID
Sbjct: 34 DGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKY---DMPIIMLTAKD--SEIDK 88
Query: 196 C--LEEGAEEYIVKP 208
LE GA++Y+ KP
Sbjct: 89 VIGLEIGADDYVTKP 103
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 139 QSNVGFDALKV------NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQ 192
Q+ G AL + +L++ D +PGM G E+LK++K + + V+IM++ L
Sbjct: 32 QAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMK--VIDENIRVIIMTAYGELDM 89
Query: 193 IDSCLEEGAEEYIVKPVKLSD 213
I E GA + KP + +
Sbjct: 90 IQESKELGALTHFAKPFDIDE 110
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 139 QSNVGFDALKV------NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQ 192
Q+ G AL + +L++ D +PGM G E+LK++K + + V+IM++ L
Sbjct: 30 QAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMK--VIDENIRVIIMTAYGELDM 87
Query: 193 IDSCLEEGAEEYIVKPVKLSD 213
I E GA + KP + +
Sbjct: 88 IQESKELGALTHFAKPFDIDE 108
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 13/114 (11%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
VL V+DS L ++ ++ + VE+G A+Q++ E+S K LII D
Sbjct: 7 VLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFI----ERS-------KPQLIILD 55
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209
+P M+G ++L I ++ + V+I ++ + + +++GAE+++ KP+
Sbjct: 56 LKLPDMSGEDVLDWINQNDI--PTSVIIATAHGSVDLAVNLIQKGAEDFLEKPI 107
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Query: 136 DGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDS 195
DGE++ + K +LI+ D +P + G E+ K++++ + P+++++++D + D
Sbjct: 35 DGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLM--FPILMLTAKD--EEFDK 90
Query: 196 C--LEEGAEEYIVKP 208
LE GA++Y+ KP
Sbjct: 91 VLGLELGADDYMTKP 105
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1RNL|A Chain A, The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM
NARL
Length = 215
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 157 TMPGMTGYELLKKIKESSVFREVPVVIMSS--EDVLTQIDSCLEEGAEEYIVKPVKLSD 213
MPGM G E L K++E S+ + V +S+ EDV+T L+ GA+ Y++K ++ D
Sbjct: 60 NMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVT----ALKRGADGYLLKDMEPED 114
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 150 NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209
+L+I D + G L K+K S + VP++++ S + I + L GA++Y+ KP
Sbjct: 48 DLVILDXDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPF 107
Query: 210 KLSD 213
+D
Sbjct: 108 NRND 111
>pdb|2NT4|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Prot (H92f Mutant)
Length = 127
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 160 GMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209
G GY + K+K+ + VP+VI+ + D Q L+ A+EY+ KPV
Sbjct: 62 GQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQF-RKLKAHADEYVAKPV 110
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 6/46 (13%)
Query: 143 GFDALKV------NLIITDYTMPGMTGYELLKKIKESSVFREVPVV 182
G DA+K+ N++I D MPGMTG E+L +I++ + +V +V
Sbjct: 38 GLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIV 83
>pdb|2GKG|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Prot
pdb|2I6F|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|B Chain B, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|C Chain C, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
Length = 127
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 160 GMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209
G GY + K+K+ + VP+VI+ + D Q L+ A+EY+ KPV
Sbjct: 62 GQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQ-HRKLKAHADEYVAKPV 110
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 17/124 (13%)
Query: 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLII 153
L VL +D++ V R + + LL C+VT V S L+ + + + ++
Sbjct: 8 LKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHK------------VVF 55
Query: 154 TDYTMPGMTGYELLKKIKESSVF----REVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209
D MPG+ Y++ +I E R + V + + D T+ + C+ G + ++KPV
Sbjct: 56 MDVCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTK-EKCMSFGLDGVLLKPV 114
Query: 210 KLSD 213
L +
Sbjct: 115 SLDN 118
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 150 NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSS-EDVLTQIDSCLEEGAEEYIVKP 208
+++I D +P G+E+LK ++ES V PV+++++ DV ++ L GA++Y+ KP
Sbjct: 48 DVVILDIMLPVHDGWEILKSMRESGV--NTPVLMLTALSDVEYRV-KGLNMGADDYLPKP 104
Query: 209 VKL 211
L
Sbjct: 105 FDL 107
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIIT 154
VL VDD+ R +++ ++ + +V + +G ++ + LK +++
Sbjct: 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEAT----------NGREAVEKYKELKPDIVTM 53
Query: 155 DYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
D TMP M G + +K+I + + +++ S+ + ++ GA+++IVKP
Sbjct: 54 DITMPEMNGIDAIKEIMK--IDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKP 105
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 136 DGEQSNVGFDALK--VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSS-EDVLTQ 192
DGE+ + AL +++I D +P G+E+LK +ES V PV+ +++ DV +
Sbjct: 34 DGEEGX--YXALNEPFDVVILDIXLPVHDGWEILKSXRESGV--NTPVLXLTALSDVEYR 89
Query: 193 IDSCLEEGAEEYIVKPVKL 211
+ L GA++Y+ KP L
Sbjct: 90 V-KGLNXGADDYLPKPFDL 107
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIIT 154
VL VDD+ R +++ ++ + +V + +G ++ + LK +++
Sbjct: 3 RVLIVDDAAFMRMMLKDIITKAGYEVAGEAT----------NGREAVEKYKELKPDIVTM 52
Query: 155 DYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
D TMP M G + +K+I + + +++ S+ + ++ GA+++IVKP
Sbjct: 53 DITMPEMNGIDAIKEIMK--IDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKP 104
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSC--LEEGAEEYIV 206
V+LI+ D +P G L + ++E S V +++++ +ID LE GA++Y+
Sbjct: 47 VDLILLDINLPDENGLXLTRALRERST---VGIILVTGRS--DRIDRIVGLEXGADDYVT 101
Query: 207 KPVKLSD 213
KP++L +
Sbjct: 102 KPLELRE 108
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVE-SGTRALQYLGLDGEQSNVGFDALKVNLIIT 154
+L VDDS I VT +E G R + GE+ +A +L++
Sbjct: 6 ILVVDDS----------PXIVDVFVTXLERGGYRPIT--AFSGEECLEALNATPPDLVLL 53
Query: 155 DYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
D G+E L++IK R++PV+ ++++ + + + E+YI+KP
Sbjct: 54 DIXXEPXDGWETLERIKTDPATRDIPVLXLTAKPLTPEEANEYGSYIEDYILKP 107
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 150 NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
++++ D +P +GYE+ + IKE+ V ++ + S+D + E GA++Y+ KP
Sbjct: 45 HVVVLDVXLPDYSGYEICRXIKETRPETWVILLTLLSDD--ESVLKGFEAGADDYVTKP 101
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 150 NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
++++ D +P +GYE+ + IKE+ V ++ + S+D + E GA++Y+ KP
Sbjct: 45 HVVVLDVXLPDYSGYEICRXIKETRPETWVILLTLLSDD--ESVLKGFEAGADDYVTKP 101
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 139 QSNVGFDALKV------NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQ 192
Q+ G AL + +L++ +PGM G E+LK++K + + V+IM++ L
Sbjct: 32 QAANGLQALDIVTKERPDLVLLXMKIPGMDGIEILKRMK--VIDENIRVIIMTAYGELDM 89
Query: 193 IDSCLEEGAEEYIVKPVKLSD 213
I E GA + KP + +
Sbjct: 90 IQESKELGALTHFAKPFDIDE 110
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 136 DGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDS 195
DG+++ + K +L+I D MP G + +I + P+V++++ ++
Sbjct: 46 DGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRI---APIVVLTAFSQRDLVER 102
Query: 196 CLEEGAEEYIVKPVKLSD 213
+ GA Y+VKP +SD
Sbjct: 103 ARDAGAMAYLVKPFSISD 120
>pdb|3NHM|A Chain A, Crystal Structure Of A Response Regulator From Myxococcus
Xanthus
pdb|3NHM|B Chain B, Crystal Structure Of A Response Regulator From Myxococcus
Xanthus
Length = 133
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 13/115 (11%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
VL V++S+ R+ + LL TA + + Q L A +++I+D
Sbjct: 7 VLIVENSWTXRETLRLLLSGEFDCTTAADGASGLQQAL------------AHPPDVLISD 54
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVK 210
G GY L + + +PV+ +S T+ + + Y+VKPVK
Sbjct: 55 VNXDGXDGYALCGHFRSEPTLKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVK 108
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 150 NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+++TD MP M+G ELL+ + + + +P ++++ + ++ GA ++I KP
Sbjct: 49 GVLVTDLRMPDMSGVELLRNLGDLKI--NIPSIVITGHGDVPMAVEAMKAGAVDFIEKP 105
>pdb|3CG4|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (Chey- Like) From Methanospirillum Hungatei Jf-1
Length = 142
Score = 33.9 bits (76), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 86 TVAECSKELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFD 145
++AE ++ ++ DD++V R ++ +L + + + +SG + + L GF
Sbjct: 2 SLAEHKGDVXIVD-DDAHV-RIAVKTILSDAGFHIISADSGGQCIDLL-------KKGFS 52
Query: 146 ALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205
+ ++ D PG G++ ++ I ++S+ + + +V +++++ L+E +YI
Sbjct: 53 GV----VLLDIXXPGXDGWDTIRAILDNSLEQGIAIVXLTAKNAPDAKXIGLQEYVVDYI 108
Query: 206 VKPVKLSD 213
KP D
Sbjct: 109 TKPFDNED 116
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 152 IITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
++ D MPGM+G EL +++ +++ +P+V +++ + ++ GA E++ KP
Sbjct: 52 LVLDMRMPGMSGIELQEQL--TAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKP 106
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 16/119 (13%)
Query: 94 LHVLAVDDSYVDRKLIERLLQI-SSCKVTAVESGTRALQYLGLDGEQSNVGFDAL--KVN 150
+VL VDDS +++L QI +S +++ DGE++ + + ++
Sbjct: 37 FNVLIVDDSVF---TVKQLTQIFTSEGFNIIDTAA--------DGEEAVIKYKNHYPNID 85
Query: 151 LIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209
++ TMP M G L I E + V+++S+ + CL +GA+ +IVKP+
Sbjct: 86 IVTLXITMPKMDGITCLSNIMEFD--KNARVIMISALGKEQLVKDCLIKGAKTFIVKPL 142
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155
VL V+D+ + R ++ +Q + +V E A YL ++ ++ I D
Sbjct: 3 VLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN-----EHIP------DIAIVD 51
Query: 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+P G L+++ + + V +P++++++ + L GA++Y+ KP
Sbjct: 52 LGLPDEDGLSLIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKP 102
>pdb|2NT3|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs (Y102a Mutant)
Length = 127
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 160 GMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209
G GY + K+K+ + VP+VI+ + D Q L+ A+E + KPV
Sbjct: 62 GQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQ-HRKLKAHADEAVAKPV 110
>pdb|3CU5|A Chain A, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
pdb|3CU5|B Chain B, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
Length = 141
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 10/88 (11%)
Query: 128 RALQYLGLDGEQSNVGFDALKV------NLIITDYTMPGMTGYELLKKIKESSVFREVPV 181
+AL + +D Q++ G +A+++ N+++TD MP M G EL+ I + ++ + V
Sbjct: 25 KALSFDQID--QADDGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILK--LYPDCSV 80
Query: 182 VIMSSEDVLTQIDSCLEEGAEEYIVKPV 209
+ MS + + ++ A Y+ KP+
Sbjct: 81 IFMSGYSDKEYLKAAIKFRAIRYVEKPI 108
>pdb|2RJN|A Chain A, Crystal Structure Of An Uncharacterized Protein Q2bku2
From Neptuniibacter Caesariensis
Length = 154
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNL 151
K V+ VDD ++RL++ C + S AL+ L V L
Sbjct: 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEAL-----------KGTSVQL 54
Query: 152 IITDYTMPGMTGYELLKKIKESSVFREVPVVIMSS-EDVLTQIDSCLEEGAEEYIVKPVK 210
+I+D MP M G L+++ +S + ++ V++S D ID+ +++KP +
Sbjct: 55 VISDMRMPEMGGEVFLEQVAKS--YPDIERVVISGYADAQATIDAVNRGKISRFLLKPWE 112
Query: 211 LSD 213
D
Sbjct: 113 DED 115
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 150 NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
+++T MP M+G ELL+ + + + +P ++++ + ++ GA ++I KP
Sbjct: 49 GVLVTXLRMPDMSGVELLRNLGDLKI--NIPSIVITGHGDVPMAVEAMKAGAVDFIEKP 105
>pdb|3HDG|A Chain A, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|B Chain B, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|D Chain D, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|E Chain E, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
Length = 137
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 15/107 (14%)
Query: 117 SCKVTAVESGTRALQYLGL-------------DGEQSNVGFDALKVNLIITDYTMPGMTG 163
+ K+ VE T A ++L DGE+ F ++IITD P + G
Sbjct: 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRXPKLGG 66
Query: 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVK 210
E L +IK + V+++S+ +E G ++ KP++
Sbjct: 67 LEXLDRIKAGGA--KPYVIVISAFSEXKYFIKAIELGVHLFLPKPIE 111
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 19/120 (15%)
Query: 92 KELHVLAVDDSYVDRKLIERLLQISSCK--VTAVESGTRALQYLGLDGEQSNVGFDALKV 149
+++ V+ DD + R+ + R L +S V + G AL+ + A
Sbjct: 14 EKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELI-----------KAHLP 62
Query: 150 NLIITDYTMPGMTGYELLKKIKESSVFREVP--VVIMSSEDVLTQIDSCLEEGAEEYIVK 207
++ + DY MPGM G ++ ++ E+P V+++S+ D + L++GA +++K
Sbjct: 63 DVALLDYRMPGMDGAQVAAAVRSY----ELPTRVLLISAHDEPAIVYQALQQGAAGFLLK 118
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 136 DGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDS 195
+GE++ F + +L+I D MPG++G E+ +I++ ++ ++++++ + S
Sbjct: 33 NGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKK--KDAKIILLTA---YSHYRS 87
Query: 196 CLEE-GAEEYIVK 207
L A+EY+VK
Sbjct: 88 DLSSWAADEYVVK 100
>pdb|3LUA|A Chain A, Crystal Structure Of A Signal Receiver Domain Of Two
Component Signal Transduction (Histidine Kinase) From
Clostridium Thermocellum
Length = 140
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 145 DALKVNLIITDYTMP-GMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEE 203
D + LII D P G E+L I+ +S PV+I + D + L+ +
Sbjct: 47 DLDSITLIIXDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSD 106
Query: 204 YIVKP 208
YI+KP
Sbjct: 107 YILKP 111
>pdb|3CNB|A Chain A, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|B Chain B, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|C Chain C, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
Length = 143
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 144 FDA------LKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCL 197
FDA +K ++++ D M GM G+ + +IK + + V+ M+ + +
Sbjct: 44 FDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIV 103
Query: 198 EEGAEEYIVKPVKLS 212
GAE KP+ +
Sbjct: 104 ALGAETCFGKPLNFT 118
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 96 VLAVDDSY-VDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIIT 154
+L V+DS + R LI+ + Q + ++ A ++ L+G + G D V L+
Sbjct: 7 ILIVEDSXTIRRXLIQAIAQQTGLEIDAFDT---------LEGARHCQG-DEYVVALV-- 54
Query: 155 DYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212
D T+P E +K + E R +PVVI++++ + ++ LE G +Y+ K + S
Sbjct: 55 DLTLPDAPSGEAVKVLLE----RGLPVVILTADISEDKREAWLEAGVLDYVXKDSRHS 108
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 148 KVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVK 207
K +LI + + G+ L KKI+ + P+V + + I + L G ++Y++K
Sbjct: 48 KYDLIFLEIILSDGDGWTLCKKIRNVTT---CPIVYXTYINEDQSILNALNSGGDDYLIK 104
Query: 208 PVKL 211
P+ L
Sbjct: 105 PLNL 108
>pdb|2GWR|A Chain A, Crystal Structure Of The Response Regulator Protein Mtra
From Mycobacterium Tuberculosis
Length = 238
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 160 GMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVK 210
G G ++ + ++ S VP+V ++++ + LE GA++YI KP K
Sbjct: 61 GXNGIDVCRVLRADS---GVPIVXLTAKTDTVDVVLGLESGADDYIXKPFK 108
>pdb|2QR3|A Chain A, Crystal Structure Of The N-Terminal Signal Receiver Domain
Of Two- Component System Response Regulator From
Bacteroides Fragilis
Length = 140
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 160 GMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208
G G L +IK +R++PVV+ ++ + ++EGA +++VKP
Sbjct: 64 GNEGLFWLHEIKRQ--YRDLPVVLFTAYADIDLAVRGIKEGASDFVVKP 110
>pdb|2QXY|A Chain A, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
pdb|2QXY|B Chain B, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
Length = 142
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 148 KVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVK 207
K++L+ D G L+++I+E F + V ++S+ I + ++ GA +YI+K
Sbjct: 48 KIDLVFVD-VFEGEESLNLIRRIREE--FPDTKVAVLSAYVDKDLIINSVKAGAVDYILK 104
Query: 208 PVKLS 212
P +L
Sbjct: 105 PFRLD 109
>pdb|3I42|A Chain A, Structure Of Response Regulator Receiver Domain
(Chey-Like) From Methylobacillus Flagellatus
Length = 127
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIIT 154
L V+D + + LL++ + V SGT AL + S G+DA +
Sbjct: 5 QALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAM------STRGYDA-----VFI 53
Query: 155 DYTMPGMTGYELLKKIK 171
D +P +G L+K+++
Sbjct: 54 DLNLPDTSGLALVKQLR 70
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 27.7 bits (60), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 136 DGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDS 195
+G ++ + LK +++ D TMP M G + +K+I + + +++ S+ +
Sbjct: 13 NGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMK--IDPNAKIIVCSAMGQQAMVIE 70
Query: 196 CLEEGAEEYIV 206
++ GA+++IV
Sbjct: 71 AIKAGAKDFIV 81
>pdb|3ILH|A Chain A, Crystal Structure Of Two Component Response Regulator From
Cytophaga Hutchinsonii
Length = 146
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 61/130 (46%), Gaps = 13/130 (10%)
Query: 86 TVAECSKELHVLAVDDSYVDRKLIERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVG 143
++A+ K VL +DD + L +++++ ++ +V SG A+ L N
Sbjct: 2 SLADTRKIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKL-------NEL 54
Query: 144 FDALKV-NLIITDYTMPGMTGYELLKKIKES---SVFREVPVVIMSSEDVLTQIDSCLEE 199
+ A + ++I D MPG+ G+EL+ K+ + + ++ SS D Q + +
Sbjct: 55 YAAGRWPSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASD 114
Query: 200 GAEEYIVKPV 209
+ Y+ KP+
Sbjct: 115 WVDYYVSKPL 124
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Semet, L89m)
Length = 116
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 136 DGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDS 195
+GE++ F + +L+I D PG++G E+ +I++ ++ ++++++ S
Sbjct: 33 NGEEALKKFFSGNYDLVILDIEXPGISGLEVAGEIRKKK--KDAKIILLTAYSHYRSDXS 90
Query: 196 CLEEGAEEYIVK 207
A+EY+VK
Sbjct: 91 SW--AADEYVVK 100
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 136 DGEQSNVGFDALKVN-LIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLT 191
DG +N G ++VN LII+ P ++ E + ++ E +PVV+M + LT
Sbjct: 275 DGPAANAG---IQVNDLIISVDNKPAISALETMAQVAEIRPGSVIPVVVMRDDKQLT 328
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 136 DGEQSNVGFDALKVN-LIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLT 191
DG +N G ++VN LII+ P ++ E + ++ E +PVV+M + LT
Sbjct: 254 DGPAANAG---IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLT 307
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 136 DGEQSNVGFDALKVN-LIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLT 191
DG +N G ++VN LII+ P ++ E + ++ E +PVV+M + LT
Sbjct: 249 DGPAANAG---IQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDDKQLT 302
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,945,812
Number of Sequences: 62578
Number of extensions: 223858
Number of successful extensions: 890
Number of sequences better than 100.0: 161
Number of HSP's better than 100.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 163
length of query: 213
length of database: 14,973,337
effective HSP length: 95
effective length of query: 118
effective length of database: 9,028,427
effective search space: 1065354386
effective search space used: 1065354386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)