Query 048660
Match_columns 213
No_of_seqs 242 out of 1417
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 11:46:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.9 9.6E-24 2.1E-28 173.1 13.5 107 94-213 1-107 (229)
2 KOG0519 Sensory transduction h 99.8 4.4E-21 9.5E-26 181.3 11.8 111 91-212 664-774 (786)
3 COG4753 Response regulator con 99.8 5.9E-21 1.3E-25 168.7 10.8 106 94-212 2-110 (475)
4 COG2204 AtoC Response regulato 99.8 1.5E-20 3.3E-25 166.2 12.9 107 93-212 4-110 (464)
5 PF00072 Response_reg: Respons 99.8 4.9E-20 1.1E-24 133.4 11.7 104 96-212 1-105 (112)
6 COG3437 Response regulator con 99.8 2.6E-20 5.7E-25 157.8 9.9 111 91-212 12-123 (360)
7 COG4566 TtrR Response regulato 99.8 2.2E-19 4.8E-24 139.9 11.5 107 93-212 4-110 (202)
8 COG4565 CitB Response regulato 99.8 2.8E-19 6E-24 141.9 11.1 106 94-212 1-108 (224)
9 COG0784 CheY FOG: CheY-like re 99.8 1.7E-18 3.7E-23 128.4 13.5 107 92-211 4-112 (130)
10 COG2197 CitB Response regulato 99.8 2.9E-18 6.2E-23 139.2 13.0 105 95-212 2-108 (211)
11 COG3706 PleD Response regulato 99.8 5.9E-18 1.3E-22 148.8 14.4 109 92-211 131-239 (435)
12 PLN03029 type-a response regul 99.8 7.1E-18 1.5E-22 137.9 12.9 121 92-212 7-136 (222)
13 PRK11466 hybrid sensory histid 99.7 1.4E-17 2.9E-22 160.2 13.9 108 93-212 681-788 (914)
14 PRK10046 dpiA two-component re 99.7 2.6E-17 5.7E-22 134.3 13.5 107 93-212 4-112 (225)
15 TIGR02956 TMAO_torS TMAO reduc 99.7 2.1E-17 4.5E-22 159.7 14.3 109 93-212 702-811 (968)
16 PRK10841 hybrid sensory kinase 99.7 2E-17 4.2E-22 159.6 13.7 108 92-212 800-907 (924)
17 PRK11091 aerobic respiration c 99.7 3.1E-17 6.8E-22 155.6 14.0 109 92-212 524-633 (779)
18 PRK11107 hybrid sensory histid 99.7 3.4E-17 7.4E-22 157.2 13.6 110 92-212 666-775 (919)
19 PRK10816 DNA-binding transcrip 99.7 1.5E-16 3.3E-21 128.3 13.5 105 95-212 2-106 (223)
20 PRK15347 two component system 99.7 7E-17 1.5E-21 155.2 13.5 110 92-212 689-800 (921)
21 PRK09836 DNA-binding transcrip 99.7 2.3E-16 5E-21 127.5 13.7 105 95-212 2-106 (227)
22 PRK10529 DNA-binding transcrip 99.7 2.9E-16 6.3E-21 126.7 13.8 105 94-212 2-106 (225)
23 PRK11173 two-component respons 99.7 3.2E-16 6.9E-21 127.9 13.7 105 94-212 4-108 (237)
24 PRK10161 transcriptional regul 99.7 4.1E-16 8.8E-21 126.3 13.8 108 94-212 3-110 (229)
25 PRK10643 DNA-binding transcrip 99.7 4.7E-16 1E-20 124.6 13.7 106 94-212 1-106 (222)
26 PRK09468 ompR osmolarity respo 99.7 4.9E-16 1.1E-20 126.7 13.8 107 93-212 5-111 (239)
27 TIGR02154 PhoB phosphate regul 99.7 5.1E-16 1.1E-20 124.6 13.5 108 94-212 3-110 (226)
28 COG4567 Response regulator con 99.7 2.3E-16 5E-21 118.9 10.5 105 95-212 11-115 (182)
29 PRK09959 hybrid sensory histid 99.7 3E-16 6.6E-21 154.9 13.9 108 92-212 957-1064(1197)
30 PRK10766 DNA-binding transcrip 99.7 7E-16 1.5E-20 124.1 13.5 105 94-212 3-107 (221)
31 PRK10336 DNA-binding transcrip 99.7 7.6E-16 1.7E-20 123.3 13.5 106 94-212 1-106 (219)
32 PRK10430 DNA-binding transcrip 99.7 8.7E-16 1.9E-20 126.4 13.4 108 94-212 2-111 (239)
33 PRK11083 DNA-binding response 99.7 1.6E-15 3.5E-20 122.0 13.8 106 94-212 4-109 (228)
34 TIGR02875 spore_0_A sporulatio 99.7 1.1E-15 2.4E-20 127.1 13.2 109 93-212 2-112 (262)
35 PRK10955 DNA-binding transcrip 99.7 1.6E-15 3.4E-20 122.7 13.4 104 94-212 2-105 (232)
36 TIGR03787 marine_sort_RR prote 99.7 1.6E-15 3.4E-20 122.5 13.4 105 95-212 2-108 (227)
37 PRK10701 DNA-binding transcrip 99.7 1.6E-15 3.5E-20 123.9 13.5 104 95-212 3-106 (240)
38 PRK13856 two-component respons 99.7 1.7E-15 3.7E-20 124.1 13.4 104 95-212 3-107 (241)
39 PRK10840 transcriptional regul 99.7 1.8E-15 3.8E-20 122.5 12.9 107 93-212 3-114 (216)
40 PRK09581 pleD response regulat 99.7 4.6E-16 1E-20 137.7 10.2 111 90-212 152-262 (457)
41 PRK11517 transcriptional regul 99.7 2.5E-15 5.5E-20 120.7 13.6 104 95-212 2-105 (223)
42 COG3947 Response regulator con 99.6 3.6E-16 7.8E-21 129.4 7.7 104 94-212 1-104 (361)
43 TIGR01387 cztR_silR_copR heavy 99.6 3.8E-15 8.2E-20 119.0 13.1 104 96-212 1-104 (218)
44 PRK10923 glnG nitrogen regulat 99.6 3.7E-15 8.1E-20 134.0 13.8 106 94-212 4-109 (469)
45 PRK15115 response regulator Gl 99.6 2.9E-15 6.3E-20 133.8 12.7 107 93-212 5-111 (444)
46 CHL00148 orf27 Ycf27; Reviewed 99.6 6.5E-15 1.4E-19 119.6 13.6 106 93-212 6-111 (240)
47 PRK09958 DNA-binding transcrip 99.6 5.5E-15 1.2E-19 117.3 12.9 106 94-212 1-107 (204)
48 PRK11361 acetoacetate metaboli 99.6 4.8E-15 1E-19 132.7 13.8 107 93-212 4-110 (457)
49 PRK10365 transcriptional regul 99.6 3E-15 6.4E-20 133.4 12.2 108 92-212 4-111 (441)
50 PRK09483 response regulator; P 99.6 1.1E-14 2.3E-19 116.8 12.9 106 94-212 2-109 (217)
51 PRK14084 two-component respons 99.6 1.2E-14 2.6E-19 119.5 12.4 104 94-212 1-106 (246)
52 TIGR02915 PEP_resp_reg putativ 99.6 1E-14 2.2E-19 130.3 12.5 102 96-212 1-107 (445)
53 PRK09935 transcriptional regul 99.6 2.5E-14 5.5E-19 113.6 13.3 107 93-212 3-111 (210)
54 TIGR01818 ntrC nitrogen regula 99.6 1.3E-14 2.8E-19 130.2 12.3 104 96-212 1-104 (463)
55 PRK12555 chemotaxis-specific m 99.6 4.2E-14 9.2E-19 122.2 13.8 102 94-209 1-106 (337)
56 PRK10710 DNA-binding transcrip 99.6 5.7E-14 1.2E-18 114.0 13.6 105 94-212 11-115 (240)
57 PRK15479 transcriptional regul 99.6 6.3E-14 1.4E-18 112.1 13.5 105 95-212 2-106 (221)
58 PRK13558 bacterio-opsin activa 99.6 3.1E-14 6.8E-19 133.0 12.8 105 93-210 7-111 (665)
59 COG2201 CheB Chemotaxis respon 99.6 4.5E-14 9.8E-19 121.0 12.3 103 94-210 2-108 (350)
60 PRK10360 DNA-binding transcrip 99.6 7.4E-14 1.6E-18 110.1 12.7 103 94-212 2-106 (196)
61 PRK00742 chemotaxis-specific m 99.6 9.4E-14 2E-18 120.8 14.3 104 93-210 3-110 (354)
62 PRK09390 fixJ response regulat 99.6 9.8E-14 2.1E-18 108.7 13.1 106 93-211 3-108 (202)
63 PRK09581 pleD response regulat 99.6 7.1E-14 1.5E-18 123.7 13.6 108 94-212 3-110 (457)
64 PRK13837 two-component VirA-li 99.5 7.3E-14 1.6E-18 133.7 14.4 107 92-212 696-802 (828)
65 PRK11697 putative two-componen 99.5 5.8E-14 1.3E-18 114.7 11.8 103 94-212 2-106 (238)
66 PRK10610 chemotaxis regulatory 99.5 6.3E-13 1.4E-17 95.6 13.8 110 92-212 4-114 (129)
67 PRK10100 DNA-binding transcrip 99.5 1.4E-13 3E-18 112.1 11.3 104 92-212 9-115 (216)
68 PRK10651 transcriptional regul 99.5 8.5E-13 1.8E-17 104.9 13.1 108 92-212 5-114 (216)
69 PRK11475 DNA-binding transcrip 99.5 3.2E-13 6.9E-18 109.3 10.7 95 105-212 2-103 (207)
70 PRK10403 transcriptional regul 99.5 9E-13 2E-17 104.5 13.0 106 93-211 6-113 (215)
71 PRK15369 two component system 99.5 2E-12 4.3E-17 101.8 14.3 106 93-211 3-110 (211)
72 PRK13435 response regulator; P 99.5 1.3E-12 2.7E-17 98.9 11.7 103 93-212 5-109 (145)
73 COG3707 AmiR Response regulato 99.5 4.7E-13 1E-17 105.1 9.4 107 92-212 4-111 (194)
74 PRK15411 rcsA colanic acid cap 99.4 1.3E-12 2.8E-17 105.7 11.3 104 95-212 2-111 (207)
75 PRK13557 histidine kinase; Pro 99.4 2.3E-12 4.9E-17 116.4 13.8 108 93-212 415-523 (540)
76 PRK09191 two-component respons 99.4 7.8E-12 1.7E-16 103.5 12.4 105 92-212 136-242 (261)
77 cd00156 REC Signal receiver do 99.3 7.5E-11 1.6E-15 81.1 11.5 102 97-211 1-102 (113)
78 PRK10693 response regulator of 99.3 2.8E-11 6E-16 103.3 10.0 76 122-210 2-77 (303)
79 PRK15029 arginine decarboxylas 99.3 3.5E-11 7.6E-16 113.1 11.0 82 95-189 2-96 (755)
80 COG3279 LytT Response regulato 99.0 1.8E-09 3.9E-14 89.5 8.9 104 94-212 2-107 (244)
81 PRK11107 hybrid sensory histid 98.9 9.4E-09 2E-13 99.1 11.3 105 92-211 535-639 (919)
82 COG3706 PleD Response regulato 98.4 1.7E-07 3.7E-12 83.1 4.3 79 118-211 13-91 (435)
83 smart00448 REC cheY-homologous 98.0 6.1E-05 1.3E-09 44.2 7.4 54 95-159 2-55 (55)
84 PRK10618 phosphotransfer inter 98.0 1.2E-05 2.5E-10 78.1 5.9 50 92-158 688-737 (894)
85 PF06490 FleQ: Flagellar regul 97.6 0.0006 1.3E-08 49.5 8.4 96 95-211 1-97 (109)
86 cd02071 MM_CoA_mut_B12_BD meth 97.4 0.0032 7E-08 46.5 10.8 95 100-207 10-109 (122)
87 cd02067 B12-binding B12 bindin 97.0 0.012 2.7E-07 42.9 10.3 94 100-206 10-108 (119)
88 TIGR00640 acid_CoA_mut_C methy 96.9 0.023 5E-07 42.7 10.8 101 94-207 3-112 (132)
89 PF03709 OKR_DC_1_N: Orn/Lys/A 96.8 0.0071 1.5E-07 44.2 7.3 89 106-207 6-96 (115)
90 PRK02261 methylaspartate mutas 96.6 0.045 9.8E-07 41.4 10.9 104 93-209 3-121 (137)
91 cd02070 corrinoid_protein_B12- 96.0 0.11 2.4E-06 41.7 10.4 99 93-205 82-189 (201)
92 PF02310 B12-binding: B12 bind 95.9 0.12 2.5E-06 37.5 9.6 92 101-206 12-110 (121)
93 cd02069 methionine_synthase_B1 95.2 0.25 5.5E-06 40.1 9.7 100 93-205 88-199 (213)
94 PRK15399 lysine decarboxylase 95.1 0.18 4E-06 48.0 9.9 79 95-188 2-86 (713)
95 COG2185 Sbm Methylmalonyl-CoA 94.9 0.45 9.8E-06 36.1 9.7 103 92-207 11-122 (143)
96 PRK15400 lysine decarboxylase 94.5 0.25 5.5E-06 47.0 9.3 79 95-188 2-86 (714)
97 cd04728 ThiG Thiazole synthase 93.9 0.64 1.4E-05 38.5 9.3 93 94-206 94-203 (248)
98 TIGR02370 pyl_corrinoid methyl 93.9 0.68 1.5E-05 37.1 9.3 99 94-206 85-192 (197)
99 COG0512 PabA Anthranilate/para 93.6 0.29 6.3E-06 39.0 6.5 79 94-185 2-81 (191)
100 cd02072 Glm_B12_BD B12 binding 93.5 0.96 2.1E-05 33.8 8.9 94 102-208 12-116 (128)
101 TIGR01501 MthylAspMutase methy 93.3 1 2.2E-05 33.9 8.8 94 102-208 14-118 (134)
102 PRK00208 thiG thiazole synthas 93.1 1.4 3E-05 36.6 10.0 93 94-206 94-203 (250)
103 COG4999 Uncharacterized domain 93.0 0.44 9.4E-06 35.1 6.2 103 92-211 10-114 (140)
104 TIGR03815 CpaE_hom_Actino heli 92.6 0.25 5.5E-06 42.4 5.3 75 117-212 1-76 (322)
105 PF01596 Methyltransf_3: O-met 92.3 2.9 6.3E-05 33.7 10.8 86 65-157 42-130 (205)
106 PRK09426 methylmalonyl-CoA mut 91.8 2.1 4.7E-05 41.0 10.9 104 91-207 580-692 (714)
107 PRK03958 tRNA 2'-O-methylase; 91.0 4.3 9.3E-05 32.0 10.1 80 92-186 30-111 (176)
108 PRK08385 nicotinate-nucleotide 90.3 5.6 0.00012 33.7 11.0 94 96-204 157-256 (278)
109 COG4122 Predicted O-methyltran 90.0 2.2 4.7E-05 34.9 8.0 84 68-160 59-144 (219)
110 PF02254 TrkA_N: TrkA-N domain 89.6 5.8 0.00013 28.1 10.7 93 94-206 22-115 (116)
111 cd02065 B12-binding_like B12 b 89.2 2.8 6.1E-05 30.2 7.5 72 100-184 10-86 (125)
112 PRK10558 alpha-dehydro-beta-de 88.9 3.3 7.3E-05 34.6 8.6 90 107-208 8-99 (256)
113 TIGR00566 trpG_papA glutamine 88.6 1.4 3E-05 34.9 5.9 77 96-186 2-80 (188)
114 PRK01130 N-acetylmannosamine-6 88.4 7.7 0.00017 31.3 10.3 83 109-206 110-201 (221)
115 PF10087 DUF2325: Uncharacteri 88.0 7.1 0.00015 27.2 10.2 88 95-198 1-94 (97)
116 PRK10128 2-keto-3-deoxy-L-rham 87.8 4.5 9.8E-05 34.0 8.7 91 108-210 8-100 (267)
117 PRK00043 thiE thiamine-phospha 87.3 6.9 0.00015 31.0 9.3 76 116-206 103-187 (212)
118 cd05212 NAD_bind_m-THF_DH_Cycl 87.0 3 6.5E-05 31.6 6.6 53 92-160 27-83 (140)
119 PRK13125 trpA tryptophan synth 86.9 10 0.00022 31.3 10.3 88 105-206 117-213 (244)
120 smart00052 EAL Putative diguan 86.2 6.4 0.00014 31.4 8.7 94 108-213 137-241 (241)
121 cd04729 NanE N-acetylmannosami 85.8 17 0.00036 29.3 10.9 87 104-206 110-205 (219)
122 PRK06543 nicotinate-nucleotide 85.7 9.4 0.0002 32.4 9.5 91 95-204 161-262 (281)
123 cd01948 EAL EAL domain. This d 85.7 4.5 9.8E-05 32.3 7.5 93 109-213 137-240 (240)
124 TIGR03239 GarL 2-dehydro-3-deo 85.5 8 0.00017 32.2 9.0 62 147-209 32-93 (249)
125 PF01729 QRPTase_C: Quinolinat 85.4 4.3 9.4E-05 31.7 6.9 94 95-204 52-152 (169)
126 PRK03659 glutathione-regulated 84.8 12 0.00027 35.1 10.9 94 93-206 423-517 (601)
127 PF03602 Cons_hypoth95: Conser 84.3 12 0.00025 29.6 9.1 69 94-173 66-140 (183)
128 TIGR00693 thiE thiamine-phosph 84.2 11 0.00024 29.6 8.9 55 148-205 116-178 (196)
129 TIGR01334 modD putative molybd 84.1 17 0.00036 30.8 10.3 94 95-204 158-260 (277)
130 PRK07649 para-aminobenzoate/an 83.6 1.4 3.1E-05 35.1 3.6 75 96-185 2-79 (195)
131 cd02068 radical_SAM_B12_BD B12 83.4 7.8 0.00017 28.2 7.3 71 105-187 4-77 (127)
132 PF07688 KaiA: KaiA domain; I 83.3 11 0.00024 31.5 8.6 78 96-187 3-80 (283)
133 TIGR00007 phosphoribosylformim 83.1 9 0.00019 31.0 8.2 55 149-206 159-217 (230)
134 PRK11840 bifunctional sulfur c 82.5 12 0.00027 32.4 8.9 76 115-206 195-277 (326)
135 PRK06774 para-aminobenzoate sy 82.4 1.7 3.7E-05 34.3 3.6 77 96-186 2-80 (191)
136 PRK08007 para-aminobenzoate sy 82.4 2.9 6.3E-05 33.0 4.9 88 96-201 2-91 (187)
137 PF05690 ThiG: Thiazole biosyn 82.1 19 0.00041 29.8 9.4 97 94-206 94-203 (247)
138 PRK12724 flagellar biosynthesi 81.9 22 0.00048 32.1 10.7 100 92-204 251-364 (432)
139 TIGR00736 nifR3_rel_arch TIM-b 81.5 9.9 0.00022 31.3 7.8 56 148-205 161-218 (231)
140 cd00452 KDPG_aldolase KDPG and 81.1 15 0.00034 28.8 8.7 68 120-204 101-168 (190)
141 PRK13566 anthranilate synthase 80.6 5.3 0.00011 38.4 6.7 82 89-186 522-606 (720)
142 PRK00811 spermidine synthase; 80.6 23 0.00049 29.9 10.0 69 93-173 100-180 (283)
143 PRK05458 guanosine 5'-monophos 80.5 5.3 0.00012 34.6 6.2 55 148-205 111-166 (326)
144 PRK05703 flhF flagellar biosyn 80.5 27 0.00059 31.4 10.9 93 92-196 250-350 (424)
145 KOG2335 tRNA-dihydrouridine sy 80.4 23 0.00051 31.0 10.0 104 93-206 117-232 (358)
146 PLN02476 O-methyltransferase 80.4 25 0.00053 29.8 10.0 59 92-157 142-203 (278)
147 PRK05670 anthranilate synthase 80.2 5.2 0.00011 31.5 5.7 31 96-126 2-32 (189)
148 TIGR03151 enACPred_II putative 79.8 22 0.00047 30.5 9.7 82 109-205 101-188 (307)
149 TIGR02311 HpaI 2,4-dihydroxyhe 79.8 15 0.00032 30.6 8.4 60 147-207 32-91 (249)
150 PRK06843 inosine 5-monophospha 79.8 7.6 0.00017 34.7 7.0 56 147-205 164-220 (404)
151 PRK00748 1-(5-phosphoribosyl)- 79.5 11 0.00024 30.4 7.6 53 151-206 163-219 (233)
152 PLN02589 caffeoyl-CoA O-methyl 79.2 27 0.00059 29.0 9.8 84 68-157 79-165 (247)
153 PLN02274 inosine-5'-monophosph 79.0 9.4 0.0002 35.2 7.6 56 147-205 259-315 (505)
154 COG0159 TrpA Tryptophan syntha 79.0 4.8 0.0001 33.8 5.2 49 162-212 80-134 (265)
155 PRK04148 hypothetical protein; 78.9 4.1 9E-05 30.6 4.4 93 93-212 17-113 (134)
156 COG0157 NadC Nicotinate-nucleo 78.9 38 0.00082 28.7 10.5 92 96-204 161-259 (280)
157 PRK03562 glutathione-regulated 78.8 23 0.0005 33.5 10.3 93 93-205 423-516 (621)
158 PRK00278 trpC indole-3-glycero 78.3 38 0.00083 28.2 12.1 86 106-206 149-239 (260)
159 cd04730 NPD_like 2-Nitropropan 78.2 34 0.00073 27.5 10.8 96 94-206 81-184 (236)
160 PLN02781 Probable caffeoyl-CoA 78.2 35 0.00075 27.9 10.1 85 66-157 66-153 (234)
161 PRK10669 putative cation:proto 78.2 23 0.0005 32.8 10.1 94 93-206 440-534 (558)
162 CHL00101 trpG anthranilate syn 78.0 6 0.00013 31.2 5.4 32 96-127 2-33 (190)
163 PRK06978 nicotinate-nucleotide 77.9 15 0.00032 31.5 7.9 91 95-204 178-274 (294)
164 CHL00162 thiG thiamin biosynth 77.8 21 0.00046 29.9 8.6 80 111-206 131-217 (267)
165 PRK06559 nicotinate-nucleotide 77.7 23 0.00049 30.3 9.0 91 95-204 169-266 (290)
166 PRK06096 molybdenum transport 77.6 18 0.00039 30.8 8.4 70 119-204 192-261 (284)
167 PRK11889 flhF flagellar biosyn 77.5 54 0.0012 29.6 11.5 105 92-205 268-383 (436)
168 COG3836 HpcH 2,4-dihydroxyhept 77.5 10 0.00022 31.4 6.6 62 147-209 37-98 (255)
169 PRK07428 nicotinate-nucleotide 77.3 12 0.00026 31.9 7.3 94 95-204 168-268 (288)
170 COG0313 Predicted methyltransf 76.7 21 0.00045 30.2 8.3 97 92-201 29-127 (275)
171 cd00564 TMP_TenI Thiamine mono 76.3 33 0.00071 26.4 9.2 54 148-205 115-176 (196)
172 PRK14974 cell division protein 76.3 50 0.0011 28.8 11.0 100 93-205 168-285 (336)
173 PF01564 Spermine_synth: Sperm 76.1 9.2 0.0002 31.7 6.2 70 93-173 100-180 (246)
174 TIGR00262 trpA tryptophan synt 75.9 5.9 0.00013 33.1 5.0 46 162-209 73-124 (256)
175 PRK13111 trpA tryptophan synth 75.8 4.7 0.0001 33.7 4.4 48 162-211 75-128 (258)
176 cd04727 pdxS PdxS is a subunit 75.7 17 0.00038 30.8 7.6 42 162-206 181-224 (283)
177 COG0421 SpeE Spermidine syntha 75.3 29 0.00063 29.5 9.1 69 93-173 100-179 (282)
178 cd04723 HisA_HisF Phosphoribos 75.2 7.4 0.00016 31.9 5.4 54 150-206 161-217 (233)
179 PLN02335 anthranilate synthase 74.9 8.8 0.00019 31.3 5.7 81 92-186 17-99 (222)
180 PRK13587 1-(5-phosphoribosyl)- 74.9 14 0.0003 30.4 6.9 54 150-206 164-220 (234)
181 TIGR01303 IMP_DH_rel_1 IMP deh 74.8 14 0.0003 33.8 7.4 55 147-204 236-291 (475)
182 PRK04128 1-(5-phosphoribosyl)- 74.6 15 0.00032 30.1 6.9 52 150-206 158-210 (228)
183 PRK06895 putative anthranilate 74.1 14 0.0003 29.1 6.6 32 94-125 2-33 (190)
184 cd00331 IGPS Indole-3-glycerol 74.0 44 0.00095 26.7 12.2 80 114-206 118-200 (217)
185 TIGR00734 hisAF_rel hisA/hisF 74.0 25 0.00055 28.5 8.2 54 150-206 156-212 (221)
186 COG2022 ThiG Uncharacterized e 73.1 31 0.00067 28.6 8.2 97 94-206 101-210 (262)
187 TIGR01305 GMP_reduct_1 guanosi 73.1 29 0.00063 30.3 8.6 55 148-205 121-176 (343)
188 PLN02591 tryptophan synthase 72.8 5.9 0.00013 33.0 4.2 48 162-212 65-118 (250)
189 PRK05637 anthranilate synthase 72.6 20 0.00044 28.8 7.2 33 94-126 2-34 (208)
190 PRK12727 flagellar biosynthesi 72.2 50 0.0011 30.9 10.3 87 93-193 380-474 (559)
191 PLN02366 spermidine synthase 72.0 61 0.0013 27.8 10.4 70 93-173 115-195 (308)
192 PF02581 TMP-TENI: Thiamine mo 71.7 36 0.00077 26.5 8.3 80 109-204 88-174 (180)
193 KOG1562 Spermidine synthase [A 71.7 24 0.00052 30.4 7.5 62 95-167 147-214 (337)
194 PF00290 Trp_syntA: Tryptophan 71.5 5.1 0.00011 33.6 3.6 49 162-212 73-127 (259)
195 PRK05848 nicotinate-nucleotide 70.6 65 0.0014 27.2 12.0 94 95-205 154-255 (273)
196 PRK14722 flhF flagellar biosyn 70.6 51 0.0011 29.2 9.8 90 94-194 168-263 (374)
197 PRK09016 quinolinate phosphori 70.5 54 0.0012 28.1 9.6 91 95-204 181-277 (296)
198 PF00977 His_biosynth: Histidi 70.5 28 0.0006 28.4 7.7 54 150-206 163-219 (229)
199 PRK05581 ribulose-phosphate 3- 70.2 35 0.00077 27.1 8.2 58 149-206 132-197 (220)
200 cd04726 KGPDC_HPS 3-Keto-L-gul 70.0 51 0.0011 25.8 11.3 85 106-206 92-185 (202)
201 PRK05458 guanosine 5'-monophos 69.9 74 0.0016 27.6 12.5 96 95-205 113-228 (326)
202 PLN02823 spermine synthase 69.9 51 0.0011 28.7 9.6 55 93-159 127-187 (336)
203 TIGR02082 metH 5-methyltetrahy 69.8 49 0.0011 33.9 10.5 100 93-205 732-843 (1178)
204 PRK04302 triosephosphate isome 69.7 58 0.0012 26.3 11.8 41 164-206 161-201 (223)
205 TIGR02026 BchE magnesium-proto 69.7 33 0.00073 31.4 8.8 70 102-184 21-98 (497)
206 PRK07896 nicotinate-nucleotide 69.7 70 0.0015 27.3 11.2 93 96-204 173-271 (289)
207 TIGR00064 ftsY signal recognit 69.6 67 0.0014 27.0 10.2 100 92-204 99-222 (272)
208 PRK05567 inosine 5'-monophosph 69.3 19 0.00041 32.9 7.1 55 147-204 239-294 (486)
209 TIGR00343 pyridoxal 5'-phospha 69.1 9 0.0002 32.5 4.5 42 162-206 184-227 (287)
210 TIGR01815 TrpE-clade3 anthrani 68.7 23 0.00049 34.2 7.7 38 89-126 512-549 (717)
211 TIGR01302 IMP_dehydrog inosine 68.7 18 0.00039 32.8 6.7 54 148-204 236-290 (450)
212 PRK09490 metH B12-dependent me 68.7 39 0.00085 34.7 9.6 85 93-190 751-844 (1229)
213 CHL00200 trpA tryptophan synth 68.7 9.6 0.00021 32.0 4.7 48 162-212 78-131 (263)
214 PRK10841 hybrid sensory kinase 68.2 18 0.00038 35.9 7.1 33 92-124 682-714 (924)
215 PRK05567 inosine 5'-monophosph 67.9 78 0.0017 29.0 10.7 101 92-205 239-358 (486)
216 COG3967 DltE Short-chain dehyd 66.9 41 0.0009 27.5 7.6 81 93-186 5-86 (245)
217 COG0352 ThiE Thiamine monophos 66.6 67 0.0015 26.1 9.0 67 122-204 110-183 (211)
218 PRK05096 guanosine 5'-monophos 66.3 40 0.00087 29.5 8.0 54 148-204 122-176 (346)
219 PRK06731 flhF flagellar biosyn 66.1 80 0.0017 26.6 10.7 103 93-204 103-216 (270)
220 PF01408 GFO_IDH_MocA: Oxidore 66.0 43 0.00094 23.5 7.9 24 188-211 74-97 (120)
221 PRK04457 spermidine synthase; 65.5 79 0.0017 26.3 12.0 71 91-173 88-166 (262)
222 PRK04180 pyridoxal biosynthesi 65.5 14 0.0003 31.5 4.9 42 162-206 190-233 (293)
223 cd00429 RPE Ribulose-5-phospha 65.2 65 0.0014 25.2 8.9 57 149-206 128-193 (211)
224 PTZ00314 inosine-5'-monophosph 65.2 20 0.00044 32.9 6.4 56 147-205 252-308 (495)
225 cd01573 modD_like ModD; Quinol 64.9 40 0.00088 28.4 7.7 71 119-205 186-256 (272)
226 cd04724 Tryptophan_synthase_al 64.5 14 0.0003 30.4 4.8 43 162-207 63-111 (242)
227 PF00478 IMPDH: IMP dehydrogen 64.3 22 0.00047 31.3 6.1 55 148-205 120-175 (352)
228 PTZ00314 inosine-5'-monophosph 64.0 1.2E+02 0.0026 27.9 12.1 29 177-205 343-371 (495)
229 PLN02716 nicotinate-nucleotide 63.9 66 0.0014 27.7 8.8 101 95-204 172-287 (308)
230 PRK00994 F420-dependent methyl 63.8 19 0.00041 29.9 5.2 61 146-210 58-118 (277)
231 cd06346 PBP1_ABC_ligand_bindin 63.7 87 0.0019 26.2 11.1 78 99-191 144-231 (312)
232 cd04732 HisA HisA. Phosphorib 63.7 67 0.0015 25.8 8.7 54 150-206 162-218 (234)
233 TIGR02855 spore_yabG sporulati 63.7 75 0.0016 26.9 8.9 98 92-202 103-221 (283)
234 PRK01033 imidazole glycerol ph 63.4 61 0.0013 26.9 8.5 53 150-205 168-224 (258)
235 PLN02591 tryptophan synthase 63.3 88 0.0019 26.0 9.5 101 95-207 109-218 (250)
236 PLN02775 Probable dihydrodipic 63.0 96 0.0021 26.4 11.8 47 147-198 78-124 (286)
237 PRK07807 inosine 5-monophospha 63.0 23 0.0005 32.4 6.3 56 147-205 238-294 (479)
238 PF09456 RcsC: RcsC Alpha-Beta 62.5 23 0.0005 24.8 4.9 45 96-158 2-46 (92)
239 TIGR00262 trpA tryptophan synt 62.5 90 0.002 25.9 9.9 99 96-206 119-226 (256)
240 COG2519 GCD14 tRNA(1-methylade 62.3 69 0.0015 26.9 8.4 99 73-188 99-198 (256)
241 cd00381 IMPDH IMPDH: The catal 62.3 46 0.001 28.7 7.8 56 147-205 105-161 (325)
242 PF05582 Peptidase_U57: YabG p 62.2 66 0.0014 27.4 8.3 98 92-202 104-222 (287)
243 COG1908 FrhD Coenzyme F420-red 62.0 24 0.00052 26.1 5.0 48 159-207 11-60 (132)
244 PRK01581 speE spermidine synth 61.8 1.2E+02 0.0025 27.0 10.2 70 92-173 173-257 (374)
245 PRK07455 keto-hydroxyglutarate 61.6 56 0.0012 25.8 7.6 66 123-204 112-177 (187)
246 PF03808 Glyco_tran_WecB: Glyc 61.6 73 0.0016 24.6 9.1 79 92-186 47-134 (172)
247 KOG4175 Tryptophan synthase al 61.5 13 0.00027 30.2 3.8 48 164-213 83-136 (268)
248 PRK05718 keto-hydroxyglutarate 61.3 87 0.0019 25.4 10.1 46 160-209 50-95 (212)
249 COG5012 Predicted cobalamin bi 61.3 35 0.00075 28.0 6.3 90 102-205 117-211 (227)
250 TIGR00735 hisF imidazoleglycer 61.2 52 0.0011 27.1 7.7 39 164-205 188-227 (254)
251 cd01840 SGNH_hydrolase_yrhL_li 60.6 56 0.0012 24.3 7.2 86 96-188 2-89 (150)
252 PRK12723 flagellar biosynthesi 60.5 1.2E+02 0.0027 26.9 10.4 102 92-204 205-317 (388)
253 COG0300 DltE Short-chain dehyd 60.4 99 0.0021 26.0 9.2 86 92-185 5-91 (265)
254 PRK07695 transcriptional regul 60.4 64 0.0014 25.4 7.9 53 148-204 115-174 (201)
255 COG3684 LacD Tagatose-1,6-bisp 60.0 24 0.00052 29.7 5.3 54 153-206 202-262 (306)
256 cd08185 Fe-ADH1 Iron-containin 59.7 66 0.0014 28.2 8.5 64 94-171 26-103 (380)
257 cd03114 ArgK-like The function 59.4 31 0.00067 26.0 5.6 34 147-187 90-123 (148)
258 TIGR00096 probable S-adenosylm 58.9 89 0.0019 26.5 8.7 83 93-186 25-109 (276)
259 PRK02083 imidazole glycerol ph 58.9 76 0.0016 26.1 8.3 54 150-206 169-226 (253)
260 PRK03612 spermidine synthase; 58.9 1.1E+02 0.0024 28.2 10.1 68 94-173 322-404 (521)
261 PF04321 RmlD_sub_bind: RmlD s 58.8 17 0.00037 30.5 4.5 54 94-158 1-61 (286)
262 COG0742 N6-adenine-specific me 58.6 92 0.002 24.8 10.6 54 93-156 66-122 (187)
263 PRK05282 (alpha)-aspartyl dipe 58.5 90 0.0019 25.7 8.5 77 93-186 31-121 (233)
264 TIGR00095 RNA methyltransferas 58.1 90 0.002 24.5 10.9 83 95-186 74-159 (189)
265 KOG2550 IMP dehydrogenase/GMP 57.9 34 0.00073 30.8 6.1 72 119-204 245-317 (503)
266 PRK15320 transcriptional activ 57.7 43 0.00094 27.2 6.2 98 95-207 3-102 (251)
267 PRK08005 epimerase; Validated 57.7 29 0.00062 28.1 5.4 88 109-206 98-190 (210)
268 PRK10742 putative methyltransf 57.7 1E+02 0.0022 25.8 8.7 99 91-207 108-218 (250)
269 PLN02274 inosine-5'-monophosph 57.3 1.6E+02 0.0035 27.2 12.4 98 93-205 260-378 (505)
270 COG0626 MetC Cystathionine bet 57.0 1.1E+02 0.0024 27.3 9.4 99 91-205 100-205 (396)
271 cd08187 BDH Butanol dehydrogen 56.9 78 0.0017 27.8 8.5 64 94-171 29-106 (382)
272 cd06533 Glyco_transf_WecG_TagA 56.8 43 0.00094 25.9 6.2 79 92-186 45-132 (171)
273 PRK08857 para-aminobenzoate sy 56.7 14 0.00031 29.1 3.5 30 96-125 2-31 (193)
274 TIGR00479 rumA 23S rRNA (uraci 56.7 1.1E+02 0.0025 27.2 9.6 69 94-173 315-386 (431)
275 PRK13170 hisH imidazole glycer 56.6 71 0.0015 25.2 7.5 35 94-128 1-35 (196)
276 COG1737 RpiR Transcriptional r 56.3 93 0.002 26.1 8.5 82 94-191 133-217 (281)
277 cd01743 GATase1_Anthranilate_S 56.1 32 0.0007 26.7 5.4 31 96-126 1-31 (184)
278 PRK07765 para-aminobenzoate sy 56.1 46 0.001 26.8 6.4 33 94-126 1-33 (214)
279 cd00532 MGS-like MGS-like doma 56.0 53 0.0012 23.4 6.1 26 105-130 13-38 (112)
280 PRK11572 copper homeostasis pr 55.9 1E+02 0.0022 25.7 8.4 92 100-205 97-196 (248)
281 TIGR03061 pip_yhgE_Nterm YhgE/ 55.8 40 0.00087 25.7 5.8 51 91-153 41-101 (164)
282 TIGR00308 TRM1 tRNA(guanine-26 55.5 1.4E+02 0.0031 26.4 9.8 79 94-189 70-150 (374)
283 PRK06552 keto-hydroxyglutarate 55.5 1.1E+02 0.0024 24.8 8.4 53 155-209 43-96 (213)
284 TIGR01232 lacD tagatose 1,6-di 55.4 45 0.00097 28.9 6.4 43 164-206 227-275 (325)
285 PF11072 DUF2859: Protein of u 55.4 79 0.0017 24.0 7.0 69 95-184 64-137 (142)
286 PF01993 MTD: methylene-5,6,7, 55.3 34 0.00074 28.5 5.4 60 147-210 58-117 (276)
287 cd04722 TIM_phosphate_binding 55.2 88 0.0019 23.5 8.5 56 148-206 136-198 (200)
288 cd04731 HisF The cyclase subun 55.2 39 0.00084 27.5 5.9 53 150-205 43-98 (243)
289 TIGR01163 rpe ribulose-phospha 55.1 84 0.0018 24.6 7.7 86 108-206 95-192 (210)
290 PRK14723 flhF flagellar biosyn 55.0 1.6E+02 0.0034 28.9 10.5 100 94-205 216-329 (767)
291 COG1927 Mtd Coenzyme F420-depe 54.9 1.2E+02 0.0025 24.9 9.1 61 145-209 57-117 (277)
292 PF13659 Methyltransf_26: Meth 54.8 69 0.0015 22.2 7.4 56 93-159 23-81 (117)
293 PF00563 EAL: EAL domain; Int 54.5 7.3 0.00016 31.0 1.5 84 107-203 138-227 (236)
294 cd04741 DHOD_1A_like Dihydroor 54.4 33 0.00072 29.1 5.5 41 164-205 230-270 (294)
295 PF14097 SpoVAE: Stage V sporu 54.4 1.1E+02 0.0023 24.2 9.9 84 96-188 3-95 (180)
296 PRK04338 N(2),N(2)-dimethylgua 54.3 1.3E+02 0.0028 26.6 9.4 78 94-190 82-162 (382)
297 TIGR00417 speE spermidine synt 54.1 1.3E+02 0.0028 25.0 10.8 69 93-173 96-175 (270)
298 PRK11359 cyclic-di-GMP phospho 53.9 57 0.0012 31.1 7.7 92 109-212 683-785 (799)
299 PRK12726 flagellar biosynthesi 53.9 1.7E+02 0.0036 26.3 11.5 104 93-205 234-348 (407)
300 cd02809 alpha_hydroxyacid_oxid 53.8 1.4E+02 0.003 25.3 10.5 44 161-205 211-254 (299)
301 PF09936 Methyltrn_RNA_4: SAM- 53.5 1.1E+02 0.0024 24.3 9.5 102 93-210 42-161 (185)
302 cd02810 DHOD_DHPD_FMN Dihydroo 53.5 29 0.00063 29.0 5.0 39 164-204 230-269 (289)
303 PRK14607 bifunctional glutamin 53.4 19 0.00041 33.4 4.1 78 95-186 1-81 (534)
304 PF01180 DHO_dh: Dihydroorotat 53.3 26 0.00056 29.6 4.7 41 163-204 230-270 (295)
305 PRK14114 1-(5-phosphoribosyl)- 53.3 83 0.0018 26.0 7.6 54 150-206 160-222 (241)
306 PRK08883 ribulose-phosphate 3- 53.3 74 0.0016 25.9 7.2 88 109-206 98-194 (220)
307 COG2265 TrmA SAM-dependent met 52.9 1.6E+02 0.0035 26.6 9.8 97 91-204 313-413 (432)
308 cd08179 NADPH_BDH NADPH-depend 52.8 77 0.0017 27.8 7.7 64 94-171 24-101 (375)
309 cd05014 SIS_Kpsf KpsF-like pro 52.8 82 0.0018 22.4 7.3 89 100-208 9-99 (128)
310 cd06338 PBP1_ABC_ligand_bindin 52.8 1.4E+02 0.003 25.1 10.8 68 105-187 157-231 (345)
311 COG4825 Uncharacterized membra 52.5 57 0.0012 28.0 6.4 55 90-156 177-234 (395)
312 TIGR00888 guaA_Nterm GMP synth 52.4 42 0.00092 26.1 5.5 28 96-123 1-28 (188)
313 PRK13143 hisH imidazole glycer 52.2 45 0.00097 26.4 5.7 33 94-126 1-33 (200)
314 PF02882 THF_DHG_CYH_C: Tetrah 52.0 50 0.0011 25.5 5.7 58 91-161 34-92 (160)
315 PF03328 HpcH_HpaI: HpcH/HpaI 51.7 1E+02 0.0022 24.7 7.7 61 146-207 19-91 (221)
316 PRK13585 1-(5-phosphoribosyl)- 51.4 63 0.0014 26.2 6.6 53 151-206 166-221 (241)
317 cd08189 Fe-ADH5 Iron-containin 51.4 1.2E+02 0.0025 26.6 8.6 64 94-171 27-103 (374)
318 cd08181 PPD-like 1,3-propanedi 51.4 1.6E+02 0.0034 25.7 9.4 64 94-171 26-103 (357)
319 TIGR01361 DAHP_synth_Bsub phos 51.4 1E+02 0.0022 25.7 7.9 62 148-212 160-235 (260)
320 PRK10416 signal recognition pa 51.2 1.6E+02 0.0035 25.3 10.5 55 92-157 141-205 (318)
321 TIGR01823 PabB-fungal aminodeo 51.2 77 0.0017 30.8 7.9 82 92-186 4-94 (742)
322 PRK04128 1-(5-phosphoribosyl)- 51.1 98 0.0021 25.2 7.6 53 151-206 46-101 (228)
323 PRK10415 tRNA-dihydrouridine s 51.1 1.6E+02 0.0035 25.3 9.4 40 163-205 182-222 (321)
324 PRK00771 signal recognition pa 51.0 1.2E+02 0.0026 27.5 8.7 88 93-190 123-219 (437)
325 PRK08072 nicotinate-nucleotide 51.0 1.5E+02 0.0033 25.0 9.4 91 95-204 160-257 (277)
326 COG0134 TrpC Indole-3-glycerol 50.9 1.5E+02 0.0032 24.9 10.1 83 109-206 148-235 (254)
327 PRK09860 putative alcohol dehy 50.8 1.2E+02 0.0027 26.7 8.7 64 94-171 32-108 (383)
328 PRK08340 glucose-1-dehydrogena 50.7 1.1E+02 0.0023 24.7 7.9 36 95-130 2-37 (259)
329 TIGR00078 nadC nicotinate-nucl 50.6 1E+02 0.0022 25.8 7.8 91 95-204 150-247 (265)
330 TIGR00735 hisF imidazoleglycer 50.6 92 0.002 25.7 7.5 54 150-206 46-102 (254)
331 PRK07107 inosine 5-monophospha 50.5 1.4E+02 0.003 27.6 9.2 28 178-205 352-379 (502)
332 PF03932 CutC: CutC family; I 50.4 77 0.0017 25.5 6.7 93 100-205 96-197 (201)
333 PF06073 DUF934: Bacterial pro 50.3 95 0.0021 22.5 7.9 59 148-208 19-78 (110)
334 PRK06124 gluconate 5-dehydroge 49.6 1.1E+02 0.0024 24.5 7.8 87 92-186 10-96 (256)
335 KOG3111 D-ribulose-5-phosphate 49.4 1.3E+02 0.0027 24.4 7.5 89 106-206 101-196 (224)
336 cd01836 FeeA_FeeB_like SGNH_hy 49.4 86 0.0019 24.0 6.9 86 94-186 3-114 (191)
337 TIGR00959 ffh signal recogniti 49.3 2E+02 0.0044 26.0 10.2 86 92-189 127-225 (428)
338 PRK13586 1-(5-phosphoribosyl)- 49.3 1.1E+02 0.0024 25.0 7.7 53 150-206 162-217 (232)
339 PRK15454 ethanol dehydrogenase 49.2 89 0.0019 27.7 7.6 64 94-171 50-126 (395)
340 TIGR01306 GMP_reduct_2 guanosi 49.0 63 0.0014 28.0 6.4 55 149-206 109-164 (321)
341 PRK09140 2-dehydro-3-deoxy-6-p 49.0 1.1E+02 0.0023 24.6 7.4 52 153-206 38-89 (206)
342 cd08176 LPO Lactadehyde:propan 48.8 1.4E+02 0.003 26.2 8.8 64 94-171 29-105 (377)
343 cd02940 DHPD_FMN Dihydropyrimi 48.1 44 0.00095 28.4 5.3 41 164-205 239-279 (299)
344 TIGR01425 SRP54_euk signal rec 48.1 1.7E+02 0.0037 26.5 9.2 98 93-204 128-244 (429)
345 PF13578 Methyltransf_24: Meth 48.0 33 0.00072 23.8 3.9 53 94-158 24-79 (106)
346 PF00448 SRP54: SRP54-type pro 48.0 48 0.001 26.3 5.2 98 93-204 29-145 (196)
347 cd01748 GATase1_IGP_Synthase T 47.9 72 0.0016 25.0 6.3 32 96-127 1-32 (198)
348 PF03060 NMO: Nitronate monoox 47.8 1.8E+02 0.0039 25.0 9.4 82 109-205 128-217 (330)
349 cd04824 eu_ALAD_PBGS_cysteine_ 47.8 78 0.0017 27.4 6.6 63 125-200 223-285 (320)
350 COG0036 Rpe Pentose-5-phosphat 47.7 80 0.0017 25.9 6.4 96 98-206 91-196 (220)
351 PRK11815 tRNA-dihydrouridine s 47.7 1.5E+02 0.0032 25.6 8.6 39 164-205 193-231 (333)
352 COG2200 Rtn c-di-GMP phosphodi 47.7 95 0.0021 25.6 7.1 93 107-211 139-242 (256)
353 PRK09522 bifunctional glutamin 47.6 31 0.00067 32.1 4.5 32 94-125 2-33 (531)
354 PRK07035 short chain dehydroge 47.5 1.4E+02 0.0031 23.7 8.6 85 93-186 8-93 (252)
355 PTZ00170 D-ribulose-5-phosphat 47.2 1.4E+02 0.0031 24.2 8.0 54 149-206 139-200 (228)
356 PRK06015 keto-hydroxyglutarate 47.2 1.1E+02 0.0023 24.7 7.0 46 160-209 39-84 (201)
357 TIGR01182 eda Entner-Doudoroff 46.9 1.5E+02 0.0033 23.8 9.4 45 161-209 44-88 (204)
358 PRK13942 protein-L-isoaspartat 46.7 51 0.0011 26.3 5.3 66 92-171 100-167 (212)
359 cd01568 QPRTase_NadC Quinolina 46.5 1.2E+02 0.0025 25.5 7.5 93 95-204 153-252 (269)
360 COG1748 LYS9 Saccharopine dehy 46.5 2.2E+02 0.0047 25.5 9.6 24 178-201 70-93 (389)
361 PF04131 NanE: Putative N-acet 46.5 1.5E+02 0.0033 23.7 10.2 97 93-206 64-172 (192)
362 TIGR00138 gidB 16S rRNA methyl 46.1 1.4E+02 0.003 23.2 12.0 102 92-211 65-172 (181)
363 cd01572 QPRTase Quinolinate ph 45.9 1.8E+02 0.0039 24.4 9.9 91 95-204 154-251 (268)
364 COG0673 MviM Predicted dehydro 45.8 1.7E+02 0.0038 24.6 8.7 35 178-212 69-103 (342)
365 CHL00197 carA carbamoyl-phosph 45.6 2E+02 0.0043 25.6 9.1 92 93-204 192-285 (382)
366 PRK06843 inosine 5-monophospha 45.6 2.3E+02 0.0049 25.5 12.4 101 92-205 164-283 (404)
367 TIGR03499 FlhF flagellar biosy 45.5 74 0.0016 26.8 6.3 40 94-133 225-267 (282)
368 PRK08745 ribulose-phosphate 3- 45.4 54 0.0012 26.8 5.2 87 111-206 104-198 (223)
369 PRK05867 short chain dehydroge 45.3 1.6E+02 0.0034 23.6 8.6 86 93-186 9-94 (253)
370 PF13433 Peripla_BP_5: Peripla 45.3 66 0.0014 28.4 6.0 80 94-186 135-226 (363)
371 PRK13398 3-deoxy-7-phosphohept 45.2 1.8E+02 0.004 24.3 8.8 63 147-212 161-237 (266)
372 PRK11557 putative DNA-binding 45.2 1.8E+02 0.0038 24.1 9.4 82 95-191 130-215 (278)
373 PRK05786 fabG 3-ketoacyl-(acyl 45.2 1.5E+02 0.0033 23.3 7.9 41 93-133 5-45 (238)
374 cd08186 Fe-ADH8 Iron-containin 45.1 1.2E+02 0.0025 26.7 7.7 64 94-171 27-104 (383)
375 cd06273 PBP1_GntR_like_1 This 45.0 1.5E+02 0.0033 23.6 7.9 22 163-187 104-125 (268)
376 cd04731 HisF The cyclase subun 45.0 1.6E+02 0.0035 23.9 8.1 56 148-206 162-222 (243)
377 PF07652 Flavi_DEAD: Flaviviru 44.8 1.1E+02 0.0025 23.4 6.5 89 91-188 31-136 (148)
378 PRK13141 hisH imidazole glycer 44.8 1.2E+02 0.0027 23.9 7.2 31 96-126 2-32 (205)
379 PF10672 Methyltrans_SAM: S-ad 44.7 1.1E+02 0.0023 26.1 7.0 56 91-156 144-203 (286)
380 PRK06849 hypothetical protein; 44.6 1.1E+02 0.0024 26.7 7.5 35 93-127 4-38 (389)
381 TIGR01859 fruc_bis_ald_ fructo 44.3 1.1E+02 0.0023 26.0 7.0 67 123-204 152-227 (282)
382 PF06925 MGDG_synth: Monogalac 44.3 1.2E+02 0.0026 23.1 6.8 56 145-206 86-143 (169)
383 cd08551 Fe-ADH iron-containing 44.3 1.6E+02 0.0036 25.5 8.5 64 94-171 24-100 (370)
384 PRK12429 3-hydroxybutyrate deh 44.2 1.6E+02 0.0034 23.4 7.9 85 93-186 4-89 (258)
385 PRK10060 RNase II stability mo 44.2 1E+02 0.0022 29.3 7.6 94 107-212 544-648 (663)
386 PRK05693 short chain dehydroge 44.1 1.6E+02 0.0034 24.0 8.0 78 95-186 3-80 (274)
387 cd02911 arch_FMN Archeal FMN-b 44.0 1.4E+02 0.003 24.4 7.5 52 149-205 166-218 (233)
388 KOG3040 Predicted sugar phosph 44.0 87 0.0019 25.7 6.0 88 94-198 40-132 (262)
389 TIGR03572 WbuZ glycosyl amidat 43.9 1.7E+02 0.0036 23.6 8.0 52 151-205 170-225 (232)
390 PRK06182 short chain dehydroge 43.9 1.7E+02 0.0038 23.7 8.3 78 94-186 4-82 (273)
391 cd01424 MGS_CPS_II Methylglyox 43.9 1.1E+02 0.0024 21.4 9.2 32 100-131 9-40 (110)
392 PF01135 PCMT: Protein-L-isoas 43.8 52 0.0011 26.5 4.9 86 73-172 77-164 (209)
393 PF00834 Ribul_P_3_epim: Ribul 43.6 17 0.00038 29.1 2.0 89 109-206 97-193 (201)
394 PRK08226 short chain dehydroge 43.6 1.6E+02 0.0035 23.6 7.9 85 93-186 6-90 (263)
395 cd08194 Fe-ADH6 Iron-containin 43.6 2E+02 0.0044 25.1 8.9 64 94-171 24-100 (375)
396 TIGR01579 MiaB-like-C MiaB-lik 43.6 1.3E+02 0.0029 26.7 7.8 60 103-187 10-73 (414)
397 COG1184 GCD2 Translation initi 43.5 1.1E+02 0.0024 26.3 6.9 62 116-188 119-180 (301)
398 PRK08318 dihydropyrimidine deh 43.5 53 0.0011 29.3 5.3 42 164-205 239-280 (420)
399 PF04131 NanE: Putative N-acet 43.4 1E+02 0.0023 24.6 6.3 67 117-202 45-114 (192)
400 PRK05742 nicotinate-nucleotide 43.1 1.6E+02 0.0035 24.9 7.8 67 119-204 192-258 (277)
401 TIGR00696 wecB_tagA_cpsF bacte 43.1 1.6E+02 0.0035 23.0 8.0 70 91-173 46-123 (177)
402 PRK03522 rumB 23S rRNA methylu 42.9 2.1E+02 0.0046 24.3 9.9 66 93-173 195-264 (315)
403 PRK06806 fructose-bisphosphate 42.8 1.4E+02 0.0031 25.2 7.6 68 123-204 152-227 (281)
404 KOG0189 Phosphoadenosine phosp 42.6 29 0.00063 28.2 3.1 72 106-188 35-109 (261)
405 PF01380 SIS: SIS domain SIS d 42.5 1.2E+02 0.0026 21.4 6.4 83 95-193 7-95 (131)
406 PRK09722 allulose-6-phosphate 42.4 1.3E+02 0.0027 24.8 6.9 89 109-206 100-196 (229)
407 PRK08535 translation initiatio 42.4 2E+02 0.0044 24.6 8.5 81 90-187 143-231 (310)
408 COG3959 Transketolase, N-termi 42.3 1.1E+02 0.0025 25.2 6.5 57 95-157 173-241 (243)
409 PLN02645 phosphoglycolate phos 42.2 83 0.0018 26.8 6.1 50 148-201 27-86 (311)
410 PRK14188 bifunctional 5,10-met 42.2 91 0.002 26.7 6.3 34 91-124 156-189 (296)
411 TIGR01459 HAD-SF-IIA-hyp4 HAD- 41.9 97 0.0021 25.1 6.3 51 148-202 7-66 (242)
412 PF00497 SBP_bac_3: Bacterial 41.9 1E+02 0.0023 23.5 6.4 52 92-156 109-160 (225)
413 PRK07024 short chain dehydroge 41.9 1.8E+02 0.004 23.3 9.0 83 94-185 3-85 (257)
414 PRK08185 hypothetical protein; 41.9 1.3E+02 0.0029 25.5 7.2 65 123-202 148-223 (283)
415 PF01976 DUF116: Protein of un 41.8 42 0.00092 25.9 3.9 36 107-153 76-111 (158)
416 cd04740 DHOD_1B_like Dihydroor 41.7 70 0.0015 26.9 5.6 38 164-204 220-257 (296)
417 cd00331 IGPS Indole-3-glycerol 41.7 82 0.0018 25.1 5.8 41 162-205 59-99 (217)
418 cd00758 MoCF_BD MoCF_BD: molyb 41.7 1.1E+02 0.0024 22.3 6.1 45 104-157 19-67 (133)
419 PRK08649 inosine 5-monophospha 41.7 2.5E+02 0.0054 24.8 11.5 56 146-206 152-214 (368)
420 PRK10538 malonic semialdehyde 41.5 1.8E+02 0.0039 23.2 8.1 38 95-132 2-39 (248)
421 cd01079 NAD_bind_m-THF_DH NAD 41.5 1.2E+02 0.0026 24.3 6.5 33 91-123 60-92 (197)
422 PRK01362 putative translaldola 41.4 1.9E+02 0.0042 23.4 8.9 87 110-208 94-185 (214)
423 KOG1429 dTDP-glucose 4-6-dehyd 41.4 66 0.0014 27.7 5.1 74 91-170 25-98 (350)
424 KOG1601 GATA-4/5/6 transcripti 41.4 8.4 0.00018 31.5 -0.1 64 147-210 62-125 (340)
425 TIGR01452 PGP_euk phosphoglyco 40.9 97 0.0021 25.8 6.3 50 149-202 2-61 (279)
426 cd06279 PBP1_LacI_like_3 Ligan 40.8 1.5E+02 0.0033 24.0 7.5 79 92-186 33-124 (283)
427 PF02254 TrkA_N: TrkA-N domain 40.7 1.2E+02 0.0027 21.0 6.7 49 96-156 1-49 (116)
428 cd06296 PBP1_CatR_like Ligand- 40.7 1.9E+02 0.004 23.1 8.0 82 92-188 28-127 (270)
429 cd06382 PBP1_iGluR_Kainate N-t 40.6 2.2E+02 0.0047 23.8 10.0 80 95-187 131-218 (327)
430 COG4262 Predicted spermidine s 40.6 2.8E+02 0.006 25.0 9.8 70 93-173 313-396 (508)
431 PRK07067 sorbitol dehydrogenas 40.5 1.9E+02 0.0041 23.1 8.7 81 93-185 6-87 (257)
432 PLN02889 oxo-acid-lyase/anthra 40.5 87 0.0019 31.2 6.6 83 93-185 81-169 (918)
433 PRK08085 gluconate 5-dehydroge 40.5 1.9E+02 0.0041 23.1 8.8 85 93-186 9-94 (254)
434 PRK13152 hisH imidazole glycer 40.4 1.7E+02 0.0037 23.0 7.4 33 96-128 2-34 (201)
435 PRK06512 thiamine-phosphate py 40.3 62 0.0013 26.3 4.8 53 148-204 131-189 (221)
436 cd01575 PBP1_GntR Ligand-bindi 40.3 1.9E+02 0.004 23.0 8.0 23 163-188 104-126 (268)
437 PF14606 Lipase_GDSL_3: GDSL-l 40.1 37 0.00081 26.8 3.4 37 147-186 58-101 (178)
438 PRK14191 bifunctional 5,10-met 40.0 82 0.0018 26.8 5.6 60 91-163 155-215 (285)
439 TIGR01304 IMP_DH_rel_2 IMP deh 40.0 1.8E+02 0.004 25.7 8.0 88 107-206 178-283 (369)
440 PRK06106 nicotinate-nucleotide 40.0 2.3E+02 0.0051 24.0 11.4 90 96-204 167-263 (281)
441 TIGR01302 IMP_dehydrog inosine 39.7 2.9E+02 0.0063 25.0 12.0 100 92-206 235-355 (450)
442 COG1091 RfbD dTDP-4-dehydrorha 39.7 78 0.0017 26.9 5.4 56 95-162 2-64 (281)
443 COG0503 Apt Adenine/guanine ph 39.5 66 0.0014 25.2 4.7 31 92-122 115-148 (179)
444 PRK13944 protein-L-isoaspartat 39.3 1.7E+02 0.0036 23.1 7.2 65 93-171 97-164 (205)
445 TIGR03590 PseG pseudaminic aci 39.3 1.9E+02 0.0041 24.1 7.8 60 110-187 46-112 (279)
446 KOG1203 Predicted dehydrogenas 39.2 1E+02 0.0022 27.7 6.3 74 89-173 75-149 (411)
447 PRK10537 voltage-gated potassi 39.0 2.8E+02 0.0061 24.7 10.3 40 163-206 316-355 (393)
448 cd08182 HEPD Hydroxyethylphosp 39.0 2.1E+02 0.0046 24.8 8.4 64 94-171 24-97 (367)
449 PRK11829 biofilm formation reg 38.8 1.9E+02 0.0042 27.0 8.6 92 107-212 542-646 (660)
450 KOG0026 Anthranilate synthase, 38.8 1.8E+02 0.0038 23.0 6.7 80 93-186 18-100 (223)
451 cd01833 XynB_like SGNH_hydrola 38.6 27 0.00059 25.9 2.4 40 145-186 37-87 (157)
452 PF12847 Methyltransf_18: Meth 38.5 1.2E+02 0.0026 20.7 5.6 69 92-173 24-100 (112)
453 PHA02518 ParA-like protein; Pr 38.5 96 0.0021 24.1 5.6 13 92-104 28-40 (211)
454 PRK01372 ddl D-alanine--D-alan 38.5 82 0.0018 26.3 5.5 40 105-155 24-63 (304)
455 cd03115 SRP The signal recogni 38.4 1.7E+02 0.0037 22.0 8.8 88 93-190 28-126 (173)
456 PRK07107 inosine 5-monophospha 38.4 1.9E+02 0.004 26.8 8.1 55 147-205 253-310 (502)
457 PRK10624 L-1,2-propanediol oxi 38.3 1.4E+02 0.0031 26.2 7.1 63 94-170 31-106 (382)
458 PRK07259 dihydroorotate dehydr 38.2 2.4E+02 0.0053 23.7 9.7 39 163-204 222-260 (301)
459 PF06283 ThuA: Trehalose utili 38.2 87 0.0019 24.9 5.4 76 95-185 1-88 (217)
460 PRK12829 short chain dehydroge 38.2 2.1E+02 0.0045 22.9 8.5 85 92-186 10-94 (264)
461 PRK08673 3-deoxy-7-phosphohept 38.1 2.2E+02 0.0047 24.9 8.0 63 147-212 227-303 (335)
462 PF00156 Pribosyltran: Phospho 38.1 54 0.0012 23.2 3.8 31 91-121 86-119 (125)
463 COG1411 Uncharacterized protei 38.1 1.9E+02 0.0042 23.5 7.0 57 147-206 150-209 (229)
464 cd06292 PBP1_LacI_like_10 Liga 38.0 1.7E+02 0.0037 23.4 7.3 38 148-188 83-132 (273)
465 PF03102 NeuB: NeuB family; I 38.0 1.7E+02 0.0036 24.3 7.1 76 105-197 57-132 (241)
466 PRK15482 transcriptional regul 38.0 2.4E+02 0.0051 23.5 10.0 84 94-191 138-222 (285)
467 cd08170 GlyDH Glycerol dehydro 37.9 2.1E+02 0.0046 24.7 8.1 75 94-185 23-108 (351)
468 TIGR01037 pyrD_sub1_fam dihydr 37.9 82 0.0018 26.5 5.4 38 164-204 223-260 (300)
469 PRK02615 thiamine-phosphate py 37.7 2.8E+02 0.0061 24.3 8.9 67 122-204 246-319 (347)
470 PRK12399 tagatose 1,6-diphosph 37.7 1.9E+02 0.004 25.2 7.4 42 165-206 227-274 (324)
471 cd01080 NAD_bind_m-THF_DH_Cycl 37.5 1.7E+02 0.0036 22.7 6.7 42 92-133 43-85 (168)
472 TIGR01919 hisA-trpF 1-(5-phosp 37.5 2.3E+02 0.0051 23.3 8.0 54 150-206 165-224 (243)
473 PRK08335 translation initiatio 37.4 2.1E+02 0.0046 24.2 7.7 61 117-188 110-170 (275)
474 PRK02506 dihydroorotate dehydr 37.4 78 0.0017 27.1 5.2 39 165-204 229-267 (310)
475 cd03825 GT1_wcfI_like This fam 37.4 1.5E+02 0.0033 24.6 7.1 73 95-183 2-81 (365)
476 TIGR03572 WbuZ glycosyl amidat 37.4 1E+02 0.0022 24.8 5.7 69 124-205 30-101 (232)
477 PF05175 MTS: Methyltransferas 37.4 1.4E+02 0.0031 22.7 6.3 86 71-171 34-123 (170)
478 PRK15128 23S rRNA m(5)C1962 me 37.0 1.9E+02 0.0041 25.8 7.7 55 93-156 243-301 (396)
479 PRK07455 keto-hydroxyglutarate 37.0 1.7E+02 0.0036 23.0 6.7 76 119-207 16-91 (187)
480 cd01537 PBP1_Repressors_Sugar_ 37.0 2E+02 0.0044 22.4 7.9 24 163-189 106-129 (264)
481 PRK08649 inosine 5-monophospha 36.9 2.5E+02 0.0054 24.8 8.3 86 107-205 177-283 (368)
482 cd06282 PBP1_GntR_like_2 Ligan 36.8 2.1E+02 0.0046 22.6 8.5 22 163-187 104-125 (266)
483 cd06281 PBP1_LacI_like_5 Ligan 36.6 2.2E+02 0.0048 22.8 8.1 22 163-187 104-125 (269)
484 PRK06194 hypothetical protein; 36.5 2.4E+02 0.0051 23.0 8.6 37 94-130 7-43 (287)
485 TIGR00512 salvage_mtnA S-methy 36.3 2.5E+02 0.0053 24.5 8.1 83 89-186 176-267 (331)
486 PLN02826 dihydroorotate dehydr 36.1 83 0.0018 28.2 5.3 40 164-204 328-367 (409)
487 KOG3367 Hypoxanthine-guanine p 36.1 26 0.00057 27.6 1.9 23 93-115 125-147 (216)
488 PRK13802 bifunctional indole-3 36.0 4.1E+02 0.009 25.7 10.2 88 106-206 149-239 (695)
489 PF02662 FlpD: Methyl-viologen 36.0 1.4E+02 0.0029 21.9 5.7 43 163-206 14-58 (124)
490 TIGR01684 viral_ppase viral ph 36.0 1.6E+02 0.0034 25.4 6.6 106 95-205 62-189 (301)
491 PRK06057 short chain dehydroge 35.9 2.3E+02 0.0049 22.7 7.8 32 93-124 7-38 (255)
492 cd04738 DHOD_2_like Dihydrooro 35.9 69 0.0015 27.6 4.7 40 164-204 267-306 (327)
493 cd03422 YedF YedF is a bacteri 35.9 1.2E+02 0.0026 19.5 5.2 33 93-125 26-58 (69)
494 cd04726 KGPDC_HPS 3-Keto-L-gul 35.9 93 0.002 24.2 5.2 11 194-204 97-107 (202)
495 PRK13168 rumA 23S rRNA m(5)U19 35.9 3.3E+02 0.0071 24.5 10.2 69 94-173 320-390 (443)
496 cd02808 GltS_FMN Glutamate syn 35.7 2.3E+02 0.005 25.1 8.1 28 177-204 284-311 (392)
497 cd01542 PBP1_TreR_like Ligand- 35.6 2.1E+02 0.0045 22.6 7.4 80 92-186 28-122 (259)
498 cd01571 NAPRTase_B Nicotinate 35.5 2.8E+02 0.0061 23.7 10.4 88 106-204 171-270 (302)
499 cd04724 Tryptophan_synthase_al 35.5 2.5E+02 0.0054 23.0 9.4 95 96-206 108-214 (242)
500 PF01113 DapB_N: Dihydrodipico 35.4 1.4E+02 0.0031 21.5 5.8 44 149-198 68-111 (124)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.91 E-value=9.6e-24 Score=173.10 Aligned_cols=107 Identities=22% Similarity=0.425 Sum_probs=100.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||||||++..+..+...|+..||.|..+.+|.+|++.+ ... ||+||+|++||++||+++|++||+.
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~-----------~~~-~dlviLD~~lP~~dG~~~~~~iR~~ 68 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAA-----------REQ-PDLVLLDLMLPDLDGLELCRRLRAK 68 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hcC-CCEEEEECCCCCCCHHHHHHHHHhh
Confidence 3799999999999999999999999999999999999998 555 9999999999999999999999975
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLSD 213 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~e 213 (213)
.....|||++|+..+..+...++++|||||+.|||++.|
T Consensus 69 -~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~E 107 (229)
T COG0745 69 -KGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRE 107 (229)
T ss_pred -cCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHH
Confidence 467889999999999999999999999999999998754
No 2
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.85 E-value=4.4e-21 Score=181.30 Aligned_cols=111 Identities=32% Similarity=0.535 Sum_probs=103.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
..+.+|||||||..+++....+|++.|+.++.+.+|.||++.+. ....||+||||++||.|||++++++|
T Consensus 664 l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~----------~~~~y~~ifmD~qMP~mDG~e~~~~i 733 (786)
T KOG0519|consen 664 LTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK----------PPHSYDVIFMDLQMPEMDGYEATREI 733 (786)
T ss_pred ccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC----------CCCcccEEEEEcCCcccchHHHHHHH
Confidence 45789999999999999999999999999999999999999994 35689999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
|+... .++|||++|++......++|++.|+|+||.|||+.+
T Consensus 734 rk~~~-~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~ 774 (786)
T KOG0519|consen 734 RKKER-WHLPIVALTADADPSTEEECLEVGMDGYLSKPFTLE 774 (786)
T ss_pred HHhhc-CCCCEEEEecCCcHHHHHHHHHhCCceEEcccccHH
Confidence 98653 789999999999999999999999999999999853
No 3
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.84 E-value=5.9e-21 Score=168.68 Aligned_cols=106 Identities=30% Similarity=0.530 Sum_probs=98.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHh--hcCCE-EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQ--ISSCK-VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~--~~g~~-v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
.+||||||++.+|++|+.++. .+|+. |.+|.||.+|++.+ ....|||||+|+.||+|||+++++.+
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli-----------~e~~pDiviTDI~MP~mdGLdLI~~i 70 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELI-----------QETQPDIVITDINMPGMDGLDLIKAI 70 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHH-----------HhcCCCEEEEecCCCCCcHHHHHHHH
Confidence 589999999999999999984 66885 56999999999999 66789999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
++. .|.+.+|++||+++-+.+.+|++.|+.+||.||++.+
T Consensus 71 ke~--~p~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~ 110 (475)
T COG4753 71 KEQ--SPDTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKA 110 (475)
T ss_pred HHh--CCCceEEEEeccchhHHHHHHHhcCchhheeCcCCHH
Confidence 986 7899999999999999999999999999999999854
No 4
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.84 E-value=1.5e-20 Score=166.22 Aligned_cols=107 Identities=34% Similarity=0.537 Sum_probs=100.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||+...|..+...|+..||.|..+.++.+|++.+. ...||+||+|+.||++||+++++.|++
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~-----------~~~~~lvl~Di~mp~~~Gl~ll~~i~~ 72 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALS-----------ESPFDLVLLDIRMPGMDGLELLKEIKS 72 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-----------cCCCCEEEEecCCCCCchHHHHHHHHh
Confidence 357999999999999999999999999999999999999994 347999999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+.+|||++|++.+.+....+++.||.|||.|||+.+
T Consensus 73 ~--~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~ 110 (464)
T COG2204 73 R--DPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLD 110 (464)
T ss_pred h--CCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHH
Confidence 7 5899999999999999999999999999999999865
No 5
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.83 E-value=4.9e-20 Score=133.40 Aligned_cols=104 Identities=34% Similarity=0.586 Sum_probs=98.1
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCC-EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcC
Q 048660 96 VLAVDDSYVDRKLIERLLQISSC-KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESS 174 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~-~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~ 174 (213)
||||||++..+..++..|+..|+ .+..+.++.+|++.+ ....||++++|+.||+++|.++++.||+.
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~-----------~~~~~d~iiid~~~~~~~~~~~~~~i~~~- 68 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELL-----------KKHPPDLIIIDLELPDGDGLELLEQIRQI- 68 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHH-----------HHSTESEEEEESSSSSSBHHHHHHHHHHH-
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHh-----------cccCceEEEEEeeeccccccccccccccc-
Confidence 79999999999999999999999 999999999999999 44579999999999999999999999987
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 175 VFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 175 ~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|+|++|...+.....+++++|+++||.||++.+
T Consensus 69 -~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~ 105 (112)
T PF00072_consen 69 -NPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPE 105 (112)
T ss_dssp -TTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHH
T ss_pred -cccccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHH
Confidence 4799999999999999999999999999999999864
No 6
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.83 E-value=2.6e-20 Score=157.84 Aligned_cols=111 Identities=32% Similarity=0.534 Sum_probs=103.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
...++||+|||++.++..++.+|+..||.+..+++|++|++.. ....+|++|+|++||+|||++++++|
T Consensus 12 ~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~-----------~~~~~dlvllD~~mp~mdg~ev~~~l 80 (360)
T COG3437 12 DEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLL-----------QEEPPDLVLLDVRMPEMDGAEVLNKL 80 (360)
T ss_pred cccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHh-----------cccCCceEEeeccCCCccHHHHHHHH
Confidence 3467999999999999999999999999999999999999988 45569999999999999999999999
Q ss_pred Hh-cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KE-SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~-~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+. .+....+|++++|+..+.+...+++.+|+++||.||+++.
T Consensus 81 k~~~p~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~ 123 (360)
T COG3437 81 KAMSPSTRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPK 123 (360)
T ss_pred HhcCCcccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHH
Confidence 98 7777889999999999999999999999999999999854
No 7
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.81 E-value=2.2e-19 Score=139.94 Aligned_cols=107 Identities=24% Similarity=0.354 Sum_probs=99.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..-|-|||||..+|+.+..+|+..||.+.+..++.+.+... ....|-++|+|+.||+++|.++-+.+.+
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~-----------~~~~pGclllDvrMPg~sGlelq~~L~~ 72 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAA-----------PLDRPGCLLLDVRMPGMSGLELQDRLAE 72 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhc-----------cCCCCCeEEEecCCCCCchHHHHHHHHh
Confidence 35689999999999999999999999999999999999875 4457889999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. ....|||++|++.+..-..+++++||.|||.|||+.+
T Consensus 73 ~--~~~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q 110 (202)
T COG4566 73 R--GIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQ 110 (202)
T ss_pred c--CCCCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchH
Confidence 7 5789999999999999999999999999999999853
No 8
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.81 E-value=2.8e-19 Score=141.88 Aligned_cols=106 Identities=23% Similarity=0.420 Sum_probs=96.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-CCE-EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQIS-SCK-VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~-g~~-v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
++|||||||+.+.+.-+.++++. ||+ |.+|.++++|...+ ....|||||+|+.||+.+|++++..||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i-----------~~~~pDLILLDiYmPd~~Gi~lL~~ir 69 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMII-----------EEFKPDLILLDIYMPDGNGIELLPELR 69 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHH-----------HhhCCCEEEEeeccCCCccHHHHHHHH
Confidence 47999999999999999999976 775 56899999999999 556789999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+. ...+-||++|+.++.+.+.+++++|+.|||.|||..+
T Consensus 70 ~~--~~~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~e 108 (224)
T COG4565 70 SQ--HYPVDVIVITAASDMETIKEALRYGVVDYLIKPFTFE 108 (224)
T ss_pred hc--CCCCCEEEEeccchHHHHHHHHhcCchhheecceeHH
Confidence 87 5678899999999999999999999999999999754
No 9
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.80 E-value=1.7e-18 Score=128.35 Aligned_cols=107 Identities=36% Similarity=0.632 Sum_probs=96.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHH-HHHHHhhhcCCCCCCCCCCC-ceeEEEEeCCCCCCCHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGT-RALQYLGLDGEQSNVGFDAL-KVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~-eal~~l~~~~~~~~~~~~~~-~~dlil~D~~mp~~~G~e~~~~ 169 (213)
...+||+|||++.++..+...|...|+.+..+.+|. +|++.+ ... .||+|++|+.||++||+++++.
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~-----------~~~~~~dlii~D~~mp~~~G~~~~~~ 72 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELL-----------RELPQPDLILLDINMPGMDGIELLRR 72 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHH-----------HhCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 357999999999999999999999999999999995 999998 444 4999999999999999999999
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCC
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKL 211 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~ 211 (213)
+|+. .+.+|+|++|++........++..|+++|+.||+..
T Consensus 73 l~~~--~~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~ 112 (130)
T COG0784 73 LRAR--GPNIPVILLTAYADEADRERALAAGADDYLTKPIFL 112 (130)
T ss_pred HHhC--CCCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCc
Confidence 9986 567888999999988877888999999999999754
No 10
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.78 E-value=2.9e-18 Score=139.20 Aligned_cols=105 Identities=30% Similarity=0.502 Sum_probs=95.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcC-CE-EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 95 HVLAVDDSYVDRKLIERLLQISS-CK-VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g-~~-v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
+|||+||++.+|..++.+|+..+ +. +..+.+|.++++.+ ....||++|+|+.||+++|+++++.|++
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~-----------~~~~pdvvl~Dl~mP~~~G~e~~~~l~~ 70 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLA-----------RELKPDVVLLDLSMPGMDGLEALKQLRA 70 (211)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHh-----------hhcCCCEEEEcCCCCCCChHHHHHHHHH
Confidence 69999999999999999998776 66 45778899999987 5668999999999999999999999996
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .++++|+++|.+.+.....+++++|+++|+.|..+.+
T Consensus 71 ~--~p~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~ 108 (211)
T COG2197 71 R--GPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPE 108 (211)
T ss_pred H--CCCCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHH
Confidence 6 7889999999999999999999999999999997654
No 11
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.77 E-value=5.9e-18 Score=148.82 Aligned_cols=109 Identities=30% Similarity=0.547 Sum_probs=103.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
...+||+|||+...+..++.+|...||.+..+.++.+|+..+ .+.+||+||+|+.||++||+++|+++|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~-----------~e~~~dlil~d~~mp~~dg~el~~~lr 199 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQL-----------AELPPDLVLLDANMPDMDGLELCTRLR 199 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHH-----------hcCCCcEEEEecCCCccCHHHHHHHHh
Confidence 467999999999999999999999999999999999999998 556899999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKL 211 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~ 211 (213)
+......+|||++++..+.....++++.|++||+.||++.
T Consensus 200 ~~~~t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~ 239 (435)
T COG3706 200 QLERTRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEE 239 (435)
T ss_pred cccccccccEEEEecccchHHHHHHHHcCCcceEecCCCH
Confidence 9877789999999999999999999999999999999873
No 12
>PLN03029 type-a response regulator protein; Provisional
Probab=99.77 E-value=7.1e-18 Score=137.86 Aligned_cols=121 Identities=64% Similarity=1.000 Sum_probs=101.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCC---------CCCCCCCCceeEEEEeCCCCCCC
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQ---------SNVGFDALKVNLIITDYTMPGMT 162 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~---------~~~~~~~~~~dlil~D~~mp~~~ 162 (213)
...+||||||+...+..+..+|+..||.+..+.++.+|++.+...... ....-....+|+||+|+.||+++
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 457999999999999999999999999999999999999988532100 00000223578999999999999
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
|+++++.|++......+|||++|+........+++++|+++||.||++..
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~ 136 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLS 136 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHH
Confidence 99999999986445689999999999999999999999999999998753
No 13
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.75 E-value=1.4e-17 Score=160.25 Aligned_cols=108 Identities=19% Similarity=0.333 Sum_probs=99.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
+.+||||||++.++..+..+|+..||.+..+.++.+|++.+. ....||+||+|+.||+++|+++++.||+
T Consensus 681 ~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~----------~~~~~Dlvl~D~~mp~~~G~~~~~~lr~ 750 (914)
T PRK11466 681 GLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQ----------NSEPFAAALVDFDLPDYDGITLARQLAQ 750 (914)
T ss_pred CcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHH----------cCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 568999999999999999999999999999999999999873 2346899999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+.+|||++|++.......+++.+|+++||.||++.+
T Consensus 751 ~--~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~ 788 (914)
T PRK11466 751 Q--YPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPRE 788 (914)
T ss_pred h--CCCCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHH
Confidence 6 5789999999999999999999999999999999864
No 14
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.75 E-value=2.6e-17 Score=134.33 Aligned_cols=107 Identities=18% Similarity=0.310 Sum_probs=96.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc-CC-EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQIS-SC-KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~-g~-~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
.++||||||++..+..+..+|+.. |+ .+..+.++.+|++.+ ....||+||+|+.||+++|+++++.|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~-----------~~~~pdlvllD~~mp~~~gle~~~~l 72 (225)
T PRK10046 4 PLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMI-----------ERFKPGLILLDNYLPDGRGINLLHEL 72 (225)
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-----------HhcCCCEEEEeCCCCCCcHHHHHHHH
Confidence 478999999999999999999864 77 477899999999998 45579999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
++. .+..+||++|+..+.....+++++|+++||.||++.+
T Consensus 73 ~~~--~~~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~ 112 (225)
T PRK10046 73 VQA--HYPGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYE 112 (225)
T ss_pred Hhc--CCCCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHH
Confidence 975 4568999999999999999999999999999998754
No 15
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.74 E-value=2.1e-17 Score=159.67 Aligned_cols=109 Identities=25% Similarity=0.369 Sum_probs=99.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++.++..+..+|+..||.|..+.+|.+|++.+ ....||+||+|+.||+++|+++++.||+
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvl~D~~mp~~~g~~~~~~ir~ 770 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECF-----------HQHAFDLALLDINLPDGDGVTLLQQLRA 770 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------HCCCCCEEEECCCCCCCCHHHHHHHHHh
Confidence 45899999999999999999999999999999999999998 4467999999999999999999999998
Q ss_pred cCCCCC-CcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFRE-VPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~-~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
...... +|||++|+........+++++|+++||.||++.+
T Consensus 771 ~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~ 811 (968)
T TIGR02956 771 IYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEE 811 (968)
T ss_pred CccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHH
Confidence 643333 8999999999999999999999999999999854
No 16
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.74 E-value=2e-17 Score=159.58 Aligned_cols=108 Identities=27% Similarity=0.548 Sum_probs=101.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
...+||||||++.++..+..+|+..||.+..+.+|.+|++.+ ....||+||+|+.||+|+|+++++.||
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l-----------~~~~~DlVl~D~~mP~mdG~el~~~ir 868 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-----------SKNHIDIVLTDVNMPNMDGYRLTQRLR 868 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------HhCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 567999999999999999999999999999999999999998 445799999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+. .+.+|||++|+....+...+++++|+++||.||++.+
T Consensus 869 ~~--~~~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~ 907 (924)
T PRK10841 869 QL--GLTLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLD 907 (924)
T ss_pred hc--CCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHH
Confidence 86 4679999999999999999999999999999999864
No 17
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.73 E-value=3.1e-17 Score=155.56 Aligned_cols=109 Identities=21% Similarity=0.426 Sum_probs=96.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
.+.+||||||++.++..+..+|+..||.+..+.++.+|++.+ ....||+||+|+.||+++|+++++.||
T Consensus 524 ~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~-----------~~~~~Dlvl~D~~mp~~~G~e~~~~ir 592 (779)
T PRK11091 524 PALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMF-----------DPDEYDLVLLDIQLPDMTGLDIARELR 592 (779)
T ss_pred cccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHh-----------hcCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 357899999999999999999999999999999999999998 455799999999999999999999999
Q ss_pred hcCCCCC-CcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFRE-VPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~-~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+....+. .|||++|++... ....++++|+++||.||++.+
T Consensus 593 ~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~ 633 (779)
T PRK11091 593 ERYPREDLPPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVP 633 (779)
T ss_pred hccccCCCCcEEEEECCchH-hHHHHHHCCCCEEEECCCCHH
Confidence 8643355 489999998754 467899999999999999753
No 18
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.73 E-value=3.4e-17 Score=157.20 Aligned_cols=110 Identities=27% Similarity=0.459 Sum_probs=102.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
..++||||||++.++..++.+|+..|+.+..+.++.+|++.+ ....||+||+|+.||+++|+++++.||
T Consensus 666 ~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~-----------~~~~~dlil~D~~mp~~~g~~~~~~lr 734 (919)
T PRK11107 666 LPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQA-----------KQRPFDLILMDIQMPGMDGIRACELIR 734 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------HhCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 357999999999999999999999999999999999999998 456799999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+....+.+|||++|+........+++++|+++||.||++.+
T Consensus 735 ~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~ 775 (919)
T PRK11107 735 QLPHNQNTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEA 775 (919)
T ss_pred hcccCCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHH
Confidence 86556789999999999999999999999999999999753
No 19
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.71 E-value=1.5e-16 Score=128.30 Aligned_cols=105 Identities=24% Similarity=0.442 Sum_probs=97.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcC
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESS 174 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~ 174 (213)
+||+|||++..+..+...|+..|+.+..+.++.+|+..+ ....||++++|+.||+++|+++++.+++.
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~-----------~~~~~dlvild~~l~~~~g~~l~~~lr~~- 69 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYL-----------NEHLPDIAIVDLGLPDEDGLSLIRRWRSN- 69 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hhCCCCEEEEECCCCCCCHHHHHHHHHhc-
Confidence 799999999999999999999999999999999999987 44579999999999999999999999975
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 175 VFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 175 ~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|+|++|+..+......+++.|+++|+.||++.+
T Consensus 70 -~~~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~ 106 (223)
T PRK10816 70 -DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIE 106 (223)
T ss_pred -CCCCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHH
Confidence 4689999999999999999999999999999999754
No 20
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.71 E-value=7e-17 Score=155.20 Aligned_cols=110 Identities=28% Similarity=0.487 Sum_probs=100.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
.+++||||||++.++..+..+|+..|+.+..+.+|.+|++.+ ....||+||+|+.||+++|+++++.||
T Consensus 689 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~-----------~~~~~dlil~D~~mp~~~G~~~~~~ir 757 (921)
T PRK15347 689 WQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELG-----------RQHRFDLVLMDIRMPGLDGLETTQLWR 757 (921)
T ss_pred ccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 356899999999999999999999999999999999999988 456799999999999999999999999
Q ss_pred hcC--CCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESS--VFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~--~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+.. ..+.+|||++|+..+.....+++++|+++||.||++.+
T Consensus 758 ~~~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~ 800 (921)
T PRK15347 758 DDPNNLDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLA 800 (921)
T ss_pred hchhhcCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHH
Confidence 742 23679999999999999999999999999999999754
No 21
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.71 E-value=2.3e-16 Score=127.54 Aligned_cols=105 Identities=20% Similarity=0.432 Sum_probs=97.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcC
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESS 174 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~ 174 (213)
+||++||++..+..+...|+..|+.+..+.++.++++.+ ....||++++|+.||+++|+++++.+++.
T Consensus 2 ~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~~~~~~g~~~~~~lr~~- 69 (227)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLA-----------MTGDYDLIILDIMLPDVNGWDIVRMLRSA- 69 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hhCCCCEEEEECCCCCCCHHHHHHHHHhc-
Confidence 799999999999999999999999999999999999887 44579999999999999999999999975
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 175 VFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 175 ~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|+|++|+..+......++++|+++|+.||++.+
T Consensus 70 -~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~ 106 (227)
T PRK09836 70 -NKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFA 106 (227)
T ss_pred -CCCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHH
Confidence 4689999999999999999999999999999999864
No 22
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.70 E-value=2.9e-16 Score=126.66 Aligned_cols=105 Identities=26% Similarity=0.450 Sum_probs=96.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||+|||++..+..+...|+..|+.+..+.++.+++..+ ....||+|++|+.||+++|+++++.+++.
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~lr~~ 70 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEA-----------ATRKPDLIILDLGLPDGDGIEFIRDLRQW 70 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 4799999999999999999999999999999999999877 44579999999999999999999999963
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+.+|+|++|+..+......++++|+++|+.||++.+
T Consensus 71 ---~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~ 106 (225)
T PRK10529 71 ---SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIG 106 (225)
T ss_pred ---CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHH
Confidence 478999999999999999999999999999999864
No 23
>PRK11173 two-component response regulator; Provisional
Probab=99.70 E-value=3.2e-16 Score=127.92 Aligned_cols=105 Identities=28% Similarity=0.482 Sum_probs=97.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||+|||++..+..+...|+..|+.+..+.++.++++.+ ....||+|++|+.||+++|+++++.+++.
T Consensus 4 ~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~lr~~ 72 (237)
T PRK11173 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL-----------SENDINLVIMDINLPGKNGLLLARELREQ 72 (237)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hhCCCCEEEEcCCCCCCCHHHHHHHHhcC
Confidence 5899999999999999999999999999999999999988 44579999999999999999999999974
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+.+|+|++|+..+......+++.|+++|+.||++.+
T Consensus 73 ---~~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~ 108 (237)
T PRK11173 73 ---ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPR 108 (237)
T ss_pred ---CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHH
Confidence 468999999999988899999999999999999854
No 24
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.70 E-value=4.1e-16 Score=126.27 Aligned_cols=108 Identities=27% Similarity=0.451 Sum_probs=98.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||+|||++..+..+...|+..|+.+..+.++.++++.+ ....||++++|+.||+++|+++++.+++.
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~l~~~ 71 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-----------NEPWPDLILLDWMLPGGSGIQFIKHLKRE 71 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hccCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 5799999999999999999999999999999999999987 44579999999999999999999999975
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
...+.+|+|++|+..+.....+++++|+++|+.||++.+
T Consensus 72 ~~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~ 110 (229)
T PRK10161 72 SMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPK 110 (229)
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHH
Confidence 434689999999999999999999999999999998754
No 25
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.69 E-value=4.7e-16 Score=124.58 Aligned_cols=106 Identities=25% Similarity=0.426 Sum_probs=97.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
++||+|||++..+..+...|+..|+.+..+.++.++++.+ ....||+|++|+.||+++|+++++.+++.
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~d~illd~~~~~~~g~~~~~~l~~~ 69 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALL-----------ESGHYSLVVLDLGLPDEDGLHLLRRWRQK 69 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------HhCCCCEEEEECCCCCCCHHHHHHHHHhc
Confidence 3799999999999999999999999999999999999987 44568999999999999999999999975
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|+|++|+..+......++++|+++|+.||++.+
T Consensus 70 --~~~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~ 106 (222)
T PRK10643 70 --KYTLPVLILTARDTLEDRVAGLDVGADDYLVKPFALE 106 (222)
T ss_pred --CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHH
Confidence 4678999999999999999999999999999999764
No 26
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.69 E-value=4.9e-16 Score=126.72 Aligned_cols=107 Identities=22% Similarity=0.420 Sum_probs=98.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||++||++..+..+...|+..|+.+..+.++.++++.+ ....||+|++|+.||+++|+++++.+|+
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~lr~ 73 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLL-----------TRESFHLMVLDLMLPGEDGLSICRRLRS 73 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 46899999999999999999999999999999999999987 4557999999999999999999999997
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+.+|||++++..+......++.+|+++|+.||++.+
T Consensus 74 ~--~~~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~ 111 (239)
T PRK09468 74 Q--NNPTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPR 111 (239)
T ss_pred c--CCCCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHH
Confidence 5 4689999999999999999999999999999999854
No 27
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.69 E-value=5.1e-16 Score=124.56 Aligned_cols=108 Identities=27% Similarity=0.490 Sum_probs=98.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||++||++..+..+...|+..|+.+..+.++.+++..+ ....||++++|+.||+++|+++++.+++.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~d~vi~d~~~~~~~g~~~~~~l~~~ 71 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLI-----------NERGPDLILLDWMLPGTSGIELCRRLRRR 71 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHH-----------HhcCCCEEEEECCCCCCcHHHHHHHHHcc
Confidence 5799999999999999999999999999999999999988 44579999999999999999999999975
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
...+.+|||++|+..+......++++|+++|+.||++.+
T Consensus 72 ~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~ 110 (226)
T TIGR02154 72 PETRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPR 110 (226)
T ss_pred ccCCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHH
Confidence 445679999999999999999999999999999998754
No 28
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.69 E-value=2.3e-16 Score=118.86 Aligned_cols=105 Identities=18% Similarity=0.288 Sum_probs=99.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcC
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESS 174 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~ 174 (213)
..|+||||..+...|.+.+++-||.|.++.+.++++..+ +...|...++|+.|.+.+|+++++.||+.
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~a-----------rt~~PayAvvDlkL~~gsGL~~i~~lr~~- 78 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAA-----------RTAPPAYAVVDLKLGDGSGLAVIEALRER- 78 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHH-----------hcCCCceEEEEeeecCCCchHHHHHHHhc-
Confidence 799999999999999999999999999999999999998 55678999999999999999999999987
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 175 VFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 175 ~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.++..||++|++.+-.....+.+.|+++||.||-+.+
T Consensus 79 -~~d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaD 115 (182)
T COG4567 79 -RADMRIVVLTGYASIATAVEAVKLGACDYLAKPADAD 115 (182)
T ss_pred -CCcceEEEEecchHHHHHHHHHHhhhhhhcCCCCChH
Confidence 6789999999999999999999999999999998754
No 29
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.68 E-value=3e-16 Score=154.86 Aligned_cols=108 Identities=28% Similarity=0.488 Sum_probs=100.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
...+||||||++.++..+..+|+..|+.+..+.++.+|++.+ ....||+||+|+.||+++|+++++.||
T Consensus 957 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlil~D~~mp~~~g~~~~~~i~ 1025 (1197)
T PRK09959 957 EKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKV-----------SMQHYDLLITDVNMPNMDGFELTRKLR 1025 (1197)
T ss_pred cCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHh-----------hcCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 356899999999999999999999999999999999999998 556799999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+. .+.+|||++|+........+++++|+++||.||++.+
T Consensus 1026 ~~--~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~ 1064 (1197)
T PRK09959 1026 EQ--NSSLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLD 1064 (1197)
T ss_pred hc--CCCCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHH
Confidence 76 5689999999999999999999999999999999754
No 30
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.68 E-value=7e-16 Score=124.10 Aligned_cols=105 Identities=25% Similarity=0.465 Sum_probs=96.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||+|||+...+..+...|...|+.+..+.++.++++.+ ....||++++|+.||+++|+++++.+++.
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~lr~~ 71 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIM-----------QNQHVDLILLDINLPGEDGLMLTRELRSR 71 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 5899999999999999999999999999999999999987 44579999999999999999999999974
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+.+|+|++++..+......++++|+++|+.||++.+
T Consensus 72 ---~~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~ 107 (221)
T PRK10766 72 ---STVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELR 107 (221)
T ss_pred ---CCCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHH
Confidence 478999999999999999999999999999999754
No 31
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.68 E-value=7.6e-16 Score=123.27 Aligned_cols=106 Identities=26% Similarity=0.436 Sum_probs=97.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
++||+|||++..+..+...|+..|+.+..+.++.+++..+ ....||++++|+.||+++|+++++.+++.
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~i~~~ 69 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEAL-----------YSAPYDAVILDLTLPGMDGRDILREWREK 69 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hhCCCCEEEEECCCCCCCHHHHHHHHHhc
Confidence 3799999999999999999999999999999999999987 44578999999999999999999999975
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|+|++|+..+......++++|+++|+.||++.+
T Consensus 70 --~~~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~ 106 (219)
T PRK10336 70 --GQREPVLILTARDALAERVEGLRLGADDYLCKPFALI 106 (219)
T ss_pred --CCCCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHH
Confidence 5688999999999999999999999999999998754
No 32
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.68 E-value=8.7e-16 Score=126.36 Aligned_cols=108 Identities=24% Similarity=0.330 Sum_probs=94.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-CCEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQIS-SCKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~-g~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
++||||||++..+..+..+|... |+.+ ..+.++.++++.+.. ....||+||+|+.||+++|+++++.++
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~DlvilD~~~p~~~G~eli~~l~ 72 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFN---------SDTPIDLILLDIYMQQENGLDLLPVLH 72 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---------cCCCCCEEEEecCCCCCCcHHHHHHHH
Confidence 58999999999999999999864 6764 578999999988731 124699999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+. .+.+|||++|+..+......++..|+++|+.||++.+
T Consensus 73 ~~--~~~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~ 111 (239)
T PRK10430 73 EA--GCKSDVIVISSAADAATIKDSLHYGVVDYLIKPFQAS 111 (239)
T ss_pred hh--CCCCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHH
Confidence 76 5689999999999999999999999999999998754
No 33
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.67 E-value=1.6e-15 Score=121.97 Aligned_cols=106 Identities=25% Similarity=0.373 Sum_probs=97.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||+|||++..+..+...|...|+.+..+.++.+++..+ ....||++++|+.||+.+|+++++.+++.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvl~d~~~~~~~g~~~~~~l~~~ 72 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKL-----------RQQPPDLVILDVGLPDISGFELCRQLLAF 72 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 5899999999999999999999999999999999999887 44579999999999999999999999986
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|+|++|+..+......+++.|+++|+.||++.+
T Consensus 73 --~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~ 109 (228)
T PRK11083 73 --HPALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPR 109 (228)
T ss_pred --CCCCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHH
Confidence 4689999999999888889999999999999998754
No 34
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.67 E-value=1.1e-15 Score=127.09 Aligned_cols=109 Identities=21% Similarity=0.386 Sum_probs=95.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc-CCEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQIS-SCKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~-g~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
.++||+|||++..+..+...|... ++.+ ..+.++.++++.+ ....||+||+|+.||+++|+++++.+
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l-----------~~~~~DlvllD~~mp~~dG~~~l~~i 70 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELI-----------KEQQPDVVVLDIIMPHLDGIGVLEKL 70 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 468999999999999999999864 5554 4789999999988 44579999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
++.......|+|++|+.........+++.|+++|+.||++.+
T Consensus 71 ~~~~~~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~ 112 (262)
T TIGR02875 71 NEIELSARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLE 112 (262)
T ss_pred HhhccccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHH
Confidence 986433458999999999999999999999999999999754
No 35
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.66 E-value=1.6e-15 Score=122.67 Aligned_cols=104 Identities=28% Similarity=0.485 Sum_probs=94.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||+|||++..+..+...|+..|+.+..+.++.++++.+ . ..||++++|+.||+++|+++++.+++.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~-~~~d~vl~d~~~~~~~g~~~~~~l~~~ 69 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-----------D-DSIDLLLLDVMMPKKNGIDTLKELRQT 69 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHh-----------h-cCCCEEEEeCCCCCCcHHHHHHHHHhc
Confidence 3799999999999999999999999999999999999976 3 269999999999999999999999985
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+ +|+|++|+..+......++++|+++|+.||++.+
T Consensus 70 --~~-~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~ 105 (232)
T PRK10955 70 --HQ-TPVIMLTARGSELDRVLGLELGADDYLPKPFNDR 105 (232)
T ss_pred --CC-CcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHH
Confidence 33 8999999999888889999999999999999754
No 36
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.66 E-value=1.6e-15 Score=122.51 Aligned_cols=105 Identities=21% Similarity=0.302 Sum_probs=95.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC--CCHHHHHHHHHh
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG--MTGYELLKKIKE 172 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~--~~G~e~~~~ir~ 172 (213)
+||++||+...+..+...|+..|+.+..+.++.+++..+ ....||++++|+.||+ .+|+++++.+++
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~~~g~~~~~~i~~ 70 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAF-----------RQRLPDLAIIDIGLGEEIDGGFMLCQDLRS 70 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHH-----------HhCCCCEEEEECCCCCCCCCHHHHHHHHHh
Confidence 699999999999999999999999999999999999987 4457999999999998 589999999997
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+.+|+|++|+..+......++++|+++|+.||++.+
T Consensus 71 ~--~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~ 108 (227)
T TIGR03787 71 L--SATLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLP 108 (227)
T ss_pred c--CCCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHH
Confidence 5 4678999999999999999999999999999999753
No 37
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.66 E-value=1.6e-15 Score=123.86 Aligned_cols=104 Identities=25% Similarity=0.346 Sum_probs=95.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcC
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESS 174 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~ 174 (213)
+||+|||++..+..+...|+..|+.+..+.++.++++.+ ....||++++|+.||+++|+++++.+++.
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~-----------~~~~~dlvild~~l~~~~g~~~~~~ir~~- 70 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATI-----------LREQPDLVLLDIMLPGKDGMTICRDLRPK- 70 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHH-----------hhCCCCEEEEeCCCCCCCHHHHHHHHHhc-
Confidence 799999999999999999999999999999999999988 44579999999999999999999999974
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 175 VFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 175 ~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
...|+|++++.........++++|+++|+.||++.+
T Consensus 71 --~~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~ 106 (240)
T PRK10701 71 --WQGPIVLLTSLDSDMNHILALEMGACDYILKTTPPA 106 (240)
T ss_pred --CCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHH
Confidence 357999999998888888999999999999999753
No 38
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.66 E-value=1.7e-15 Score=124.10 Aligned_cols=104 Identities=30% Similarity=0.483 Sum_probs=93.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcC
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESS 174 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~ 174 (213)
+||+|||++..+..+...|+..||.+..+.++.++++.+ ....||+|++|+.||+++|+++++.+++.
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvi~d~~l~~~~g~~l~~~i~~~- 70 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVL-----------ASETVDVVVVDLNLGREDGLEIVRSLATK- 70 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hhCCCCEEEEeCCCCCCCHHHHHHHHHhc-
Confidence 799999999999999999999999999999999999987 45579999999999999999999999974
Q ss_pred CCCCCcEEEEecCC-CHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 175 VFREVPVVIMSSED-VLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 175 ~~~~~pII~lt~~~-~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
..+|+|++|+.. .......++++|+++|+.||++.+
T Consensus 71 --~~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~ 107 (241)
T PRK13856 71 --SDVPIIIISGDRLEEADKVVALELGATDFIAKPFGTR 107 (241)
T ss_pred --CCCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHH
Confidence 468999999854 566778899999999999999864
No 39
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.66 E-value=1.8e-15 Score=122.46 Aligned_cols=107 Identities=23% Similarity=0.365 Sum_probs=95.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC-E-EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC---CCHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC-K-VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG---MTGYELL 167 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~-~-v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~---~~G~e~~ 167 (213)
.++||||||++..+..++..|+..++ . +..+.++.++++.+ ....||++|+|+.||+ .+|++++
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~-----------~~~~~DlvllD~~l~~~~~~~g~~~~ 71 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNL-----------PKLDAHVLITDLSMPGDKYGDGITLI 71 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHH-----------HhCCCCEEEEeCcCCCCCCCCHHHHH
Confidence 36899999999999999999987765 3 66889999999988 4457999999999999 5999999
Q ss_pred HHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 168 KKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 168 ~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+.|++. .+.+|||++|+..+......+++.|+++|+.||++.+
T Consensus 72 ~~l~~~--~~~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~ 114 (216)
T PRK10840 72 KYIKRH--FPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPT 114 (216)
T ss_pred HHHHHH--CCCCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHH
Confidence 999976 5789999999999999999999999999999998754
No 40
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.66 E-value=4.6e-16 Score=137.72 Aligned_cols=111 Identities=21% Similarity=0.364 Sum_probs=100.0
Q ss_pred cCCccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 90 CSKELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 90 ~~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
.....+||+|||++..+..+..+|. +++.+..+.++.+|+..+ ....||+|++|+.||+++|+++++.
T Consensus 152 ~~~~~~vlivdd~~~~~~~l~~~l~-~~~~~~~~~~~~~a~~~~-----------~~~~~d~vi~d~~~p~~~g~~l~~~ 219 (457)
T PRK09581 152 KDEDGRILLVDDDVSQAERIANILK-EEFRVVVVSDPSEALFNA-----------AETNYDLVIVSANFENYDPLRLCSQ 219 (457)
T ss_pred cccCceEEEEecccchHHHHHHHHh-hcceeeeecChHHHHHhc-----------ccCCCCEEEecCCCCCchHhHHHHH
Confidence 3456789999999999999999996 567778899999999987 5568999999999999999999999
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+|+....+.+|+|++|++.+.+...++++.|+++||.||++.+
T Consensus 220 i~~~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~ 262 (457)
T PRK09581 220 LRSKERTRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKN 262 (457)
T ss_pred HHhccccCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHH
Confidence 9985445799999999999999999999999999999999764
No 41
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.65 E-value=2.5e-15 Score=120.71 Aligned_cols=104 Identities=26% Similarity=0.509 Sum_probs=96.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcC
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESS 174 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~ 174 (213)
+||+|||++..+..+...|+..|+.+..+.++.+++..+ ....||++++|+.||+++|+++++.+++.
T Consensus 2 ~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~-----------~~~~~dlvi~d~~~~~~~g~~~~~~l~~~- 69 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLA-----------LKDDYALIILDIMLPGMDGWQILQTLRTA- 69 (223)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hcCCCCEEEEECCCCCCCHHHHHHHHHcC-
Confidence 799999999999999999999999999999999999987 44579999999999999999999999974
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 175 VFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 175 ~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
..+|+|++|+..+......++++|+++|+.||++.+
T Consensus 70 --~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~ 105 (223)
T PRK11517 70 --KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFS 105 (223)
T ss_pred --CCCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHH
Confidence 468999999999999999999999999999998754
No 42
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.65 E-value=3.6e-16 Score=129.36 Aligned_cols=104 Identities=27% Similarity=0.439 Sum_probs=93.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
++|+||||+......|..+|++.|+.+..++...+|++.+ ....||||++|+.||+|+|+++++++|..
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~L-----------e~~kpDLifldI~mp~~ngiefaeQvr~i 69 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLL-----------EVFKPDLIFLDIVMPYMNGIEFAEQVRDI 69 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHH-----------HhcCCCEEEEEeecCCccHHHHHHHHHHh
Confidence 3799999999999999999999999999999999999999 66789999999999999999999999987
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|||++|++.. .....+..-.+|||.|||+.+
T Consensus 70 --~~~v~iifIssh~e--ya~dsf~~n~~dYl~KPvt~e 104 (361)
T COG3947 70 --ESAVPIIFISSHAE--YADDSFGMNLDDYLPKPVTPE 104 (361)
T ss_pred --hccCcEEEEecchh--hhhhhcccchHhhccCCCCHH
Confidence 58999999999864 455566666799999999864
No 43
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.64 E-value=3.8e-15 Score=118.99 Aligned_cols=104 Identities=29% Similarity=0.514 Sum_probs=95.9
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCC
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSV 175 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~ 175 (213)
||++||++..+..+...|+..|+.+..+.++.++++.+ ....||++++|+.||+++|+++++.+++.
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvl~d~~~~~~~g~~~~~~l~~~-- 67 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLA-----------LKDDYDLIILDVMLPGMDGWQILQTLRRS-- 67 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHcc--
Confidence 58999999999999999999999999999999999988 44579999999999999999999999975
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 176 FREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 176 ~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|+|++|+..+......++++|+++|+.||++.+
T Consensus 68 ~~~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~ 104 (218)
T TIGR01387 68 GKQTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFS 104 (218)
T ss_pred CCCCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHH
Confidence 4688999999999999999999999999999998754
No 44
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.63 E-value=3.7e-15 Score=133.97 Aligned_cols=106 Identities=33% Similarity=0.504 Sum_probs=98.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||||||++..+..+...|+..||.+..+.++.+|+..+ ....||+||+|+.||+++|+++++.+++.
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l-----------~~~~~DlvllD~~lp~~dgl~~l~~ir~~ 72 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEAL-----------ASKTPDVLLSDIRMPGMDGLALLKQIKQR 72 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hcCCCCEEEECCCCCCCCHHHHHHHHHhh
Confidence 5899999999999999999999999999999999999998 45579999999999999999999999976
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|+|++|+..+......++++|+++|+.||++.+
T Consensus 73 --~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~ 109 (469)
T PRK10923 73 --HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDID 109 (469)
T ss_pred --CCCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHH
Confidence 5689999999999999999999999999999998753
No 45
>PRK15115 response regulator GlrR; Provisional
Probab=99.63 E-value=2.9e-15 Score=133.77 Aligned_cols=107 Identities=30% Similarity=0.454 Sum_probs=99.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..+...|+..||.+..+.++.+|++.+ ....||+||+|+.||+++|+++++.+++
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l-----------~~~~~dlvilD~~lp~~~g~~ll~~l~~ 73 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVL-----------NREKVDLVISDLRMDEMDGMQLFAEIQK 73 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hcCCCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 47899999999999999999999999999999999999988 4457999999999999999999999997
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+.+|||++|+..+.....+++++|+++|+.||++.+
T Consensus 74 ~--~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~ 111 (444)
T PRK15115 74 V--QPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRD 111 (444)
T ss_pred c--CCCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHH
Confidence 6 5789999999999999999999999999999998753
No 46
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.63 E-value=6.5e-15 Score=119.62 Aligned_cols=106 Identities=29% Similarity=0.525 Sum_probs=96.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||++||++..+..+...|...|+.+..+.++.+++..+ ....||++++|+.||+++|+++++.+++
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~-----------~~~~~d~illd~~~~~~~g~~~~~~l~~ 74 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLF-----------RKEQPDLVILDVMMPKLDGYGVCQEIRK 74 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 46899999999999999999999999999999999999987 4457999999999999999999999997
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. +.+|+|++|+..+......++++|+++|+.||++.+
T Consensus 75 ~---~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~ 111 (240)
T CHL00148 75 E---SDVPIIMLTALGDVSDRITGLELGADDYVVKPFSPK 111 (240)
T ss_pred c---CCCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHH
Confidence 4 478999999999988889999999999999998754
No 47
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.63 E-value=5.5e-15 Score=117.31 Aligned_cols=106 Identities=21% Similarity=0.412 Sum_probs=96.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
++||++||++..+..+...|+..|+.+. .+.++.++++.+ ....||++++|+.+|+++|+++++.+++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-----------~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 69 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRV-----------ETLKPDIVIIDVDIPGVNGIQVLETLRK 69 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHH-----------HccCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 3799999999999999999999999987 699999999988 4457999999999999999999999997
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+..|+|++|+..+......++++|+++|+.||++.+
T Consensus 70 ~--~~~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~ 107 (204)
T PRK09958 70 R--QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMN 107 (204)
T ss_pred h--CCCCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHH
Confidence 5 4678999999999989999999999999999999754
No 48
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.63 E-value=4.8e-15 Score=132.70 Aligned_cols=107 Identities=23% Similarity=0.448 Sum_probs=98.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..+...|+..||.+..+.++.+|+..+ ....||+||+|+.||+++|+++++.+++
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~dlillD~~~p~~~g~~ll~~i~~ 72 (457)
T PRK11361 4 INRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-----------ADIHPDVVLMDIRMPEMDGIKALKEMRS 72 (457)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 45899999999999999999999999999999999999988 4557999999999999999999999997
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+.+|+|++|+..+......+++.|+++|+.||++.+
T Consensus 73 ~--~~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~ 110 (457)
T PRK11361 73 H--ETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLD 110 (457)
T ss_pred c--CCCCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHH
Confidence 6 5689999999999999999999999999999998753
No 49
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.63 E-value=3e-15 Score=133.38 Aligned_cols=108 Identities=28% Similarity=0.471 Sum_probs=99.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
..++||||||++..+..+...|+..|+.+..+.++.+++..+ ....||+||+|+.||+++|+++++.++
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~DlvilD~~m~~~~G~~~~~~ir 72 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQV-----------REQVFDLVLCDVRMAEMDGIATLKEIK 72 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 357999999999999999999999999999999999999988 445799999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+. .+.+|||++|++.+......+++.|+.+|+.||++.+
T Consensus 73 ~~--~~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~ 111 (441)
T PRK10365 73 AL--NPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFD 111 (441)
T ss_pred hh--CCCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHH
Confidence 86 5789999999999999999999999999999998753
No 50
>PRK09483 response regulator; Provisional
Probab=99.61 E-value=1.1e-14 Score=116.75 Aligned_cols=106 Identities=25% Similarity=0.391 Sum_probs=95.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-CCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQIS-SCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
++|||+||++..+..+..+|+.. |+.+. .+.++.++++.+ ....||++|+|+.+|+++|+++++.++
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvi~d~~~~~~~g~~~~~~l~ 70 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWC-----------RTNAVDVVLMDMNMPGIGGLEATRKIL 70 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 58999999999999999999875 78775 789999999988 445799999999999999999999998
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+. .+.+|+|++|...+......++..|+++|+.||++.+
T Consensus 71 ~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~ 109 (217)
T PRK09483 71 RY--TPDVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQ 109 (217)
T ss_pred HH--CCCCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHH
Confidence 76 5789999999999999999999999999999998753
No 51
>PRK14084 two-component response regulator; Provisional
Probab=99.60 E-value=1.2e-14 Score=119.54 Aligned_cols=104 Identities=23% Similarity=0.330 Sum_probs=89.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC-C-EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISS-C-KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g-~-~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
++||++||++..+..+..+|+..+ + .+..+.++.+++..+ ....||++++|+.||+++|+++++.|+
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~-----------~~~~~dlv~lDi~m~~~~G~~~~~~i~ 69 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEAL-----------LINQYDIIFLDINLMDESGIELAAKIQ 69 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 479999999999999999999866 4 567899999999988 345799999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+. .+..+||++|++. ....++++.|+.+||.||++.+
T Consensus 70 ~~--~~~~~iI~~t~~~--~~~~~~~~~~~~~yl~KP~~~~ 106 (246)
T PRK14084 70 KM--KEPPAIIFATAHD--QFAVKAFELNATDYILKPFEQK 106 (246)
T ss_pred hc--CCCCEEEEEecCh--HHHHHHHhcCCcEEEECCCCHH
Confidence 85 4567788888865 3567889999999999998743
No 52
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.60 E-value=1e-14 Score=130.30 Aligned_cols=102 Identities=16% Similarity=0.272 Sum_probs=93.9
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-----CCHHHHHHHH
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-----MTGYELLKKI 170 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-----~~G~e~~~~i 170 (213)
||||||++..+..+...| .||.+..+.++.+|++.+ ....||+||+|+.||+ ++|+++++.+
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l-----------~~~~~dlvllD~~mp~~~~~~~~g~~~l~~i 67 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALV-----------RRHEPAVVTLDLGLPPDADGASEGLAALQQI 67 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHH-----------hhCCCCEEEEeCCCCCCcCCCCCHHHHHHHH
Confidence 689999999999999988 799999999999999998 4457999999999996 8999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
++. .+.+|||++|+..+.+...+++++|+++||.||++.+
T Consensus 68 ~~~--~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~ 107 (445)
T TIGR02915 68 LAI--APDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPD 107 (445)
T ss_pred Hhh--CCCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHH
Confidence 986 5789999999999999999999999999999999864
No 53
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.59 E-value=2.5e-14 Score=113.57 Aligned_cols=107 Identities=27% Similarity=0.403 Sum_probs=95.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc-CCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQIS-SCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
..+|||+||++..+..+...|+.. ++.+. .+.++.++++.+ ....||++++|+.||+++|.++++.+
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~l 71 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYL-----------RTRPVDLIIMDIDLPGTDGFTFLKRI 71 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 468999999999999999999877 57765 688999999887 44579999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
++. .+.+|||++|+.........++..|+++|+.||++.+
T Consensus 72 ~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~ 111 (210)
T PRK09935 72 KQI--QSTVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQN 111 (210)
T ss_pred HHh--CCCCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHH
Confidence 975 5679999999999888999999999999999998753
No 54
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.59 E-value=1.3e-14 Score=130.20 Aligned_cols=104 Identities=32% Similarity=0.497 Sum_probs=96.3
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCC
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSV 175 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~ 175 (213)
||||||++..+..+...|+..|+.+..+.++.+|+..+ ....||+||+|+.||+++|+++++.+++.
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~DlVllD~~~p~~~g~~ll~~l~~~-- 67 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRAL-----------ARGQPDLLITDVRMPGEDGLDLLPQIKKR-- 67 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hcCCCCEEEEcCCCCCCCHHHHHHHHHHh--
Confidence 68999999999999999999999999999999999988 44579999999999999999999999986
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 176 FREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 176 ~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|+|++|+........+++++|+++|+.||++.+
T Consensus 68 ~~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~ 104 (463)
T TIGR01818 68 HPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLD 104 (463)
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHH
Confidence 5688999999999999999999999999999998753
No 55
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.57 E-value=4.2e-14 Score=122.23 Aligned_cols=102 Identities=24% Similarity=0.382 Sum_probs=89.4
Q ss_pred cEEEEEeCCHHHHHHHHHHH-hhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLL-QISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L-~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
++||||||++..+..+..+| +..++.+. .+.++.+|++.+ ....||+|++|+.||+|+|+++++.|+
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l-----------~~~~pDlVllD~~mp~~~G~e~l~~l~ 69 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERC-----------AAQPPDVILMDLEMPRMDGVEATRRIM 69 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHH-----------hccCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 37999999999999999999 46688775 789999999998 455799999999999999999999998
Q ss_pred hcCCCCCCcEEEEecCCC--HHHHHHHHHcCCCeeeeCCC
Q 048660 172 ESSVFREVPVVIMSSEDV--LTQIDSCLEEGAEEYIVKPV 209 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~--~~~~~~~~~~G~~~~L~KP~ 209 (213)
+. ..+|+|++++... .....++++.|+++|+.||+
T Consensus 70 ~~---~~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 70 AE---RPCPILIVTSLTERNASRVFEAMGAGALDAVDTPT 106 (337)
T ss_pred HH---CCCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCC
Confidence 74 3589999998754 45667899999999999998
No 56
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.57 E-value=5.7e-14 Score=114.03 Aligned_cols=105 Identities=28% Similarity=0.431 Sum_probs=95.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||++||++..+..+...|...|+.+..+.++.+++..+ ....||++++|+.||+++|+++++.+++.
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvl~d~~~~~~~g~~~~~~l~~~ 79 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYV-----------RQTPPDLILLDLMLPGTDGLTLCREIRRF 79 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hhCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 3899999999999999999999999999999999999988 44579999999999999999999999963
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+.+|+|++++.........+++.|+++|+.||++.+
T Consensus 80 ---~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~ 115 (240)
T PRK10710 80 ---SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPR 115 (240)
T ss_pred ---CCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHH
Confidence 478999999998888889999999999999998754
No 57
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.57 E-value=6.3e-14 Score=112.12 Aligned_cols=105 Identities=26% Similarity=0.445 Sum_probs=96.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcC
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESS 174 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~ 174 (213)
+||++||++..+..+...|...|+.+..+.++.++++.+ ....||++++|+.+|+++|+++++.+++.
T Consensus 2 ~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~d~vild~~~~~~~~~~~~~~i~~~- 69 (221)
T PRK15479 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLL-----------QSEMYALAVLDINMPGMDGLEVLQRLRKR- 69 (221)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hhCCCCEEEEeCCCCCCcHHHHHHHHHhc-
Confidence 699999999999999999999999999999999999877 44579999999999999999999999976
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 175 VFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 175 ~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|+|++|+..+.....++++.|+++|+.||++.+
T Consensus 70 -~~~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~ 106 (221)
T PRK15479 70 -GQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELE 106 (221)
T ss_pred -CCCCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHH
Confidence 4678999999999888889999999999999998753
No 58
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.56 E-value=3.1e-14 Score=132.96 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=97.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++.++..+..+|...||.+..+.++.+++..+ ....||+||+|+.||+++|+++++.|++
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~-----------~~~~~Dlvl~d~~lp~~~g~~~l~~l~~ 75 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRV-----------EAGEIDCVVADHEPDGFDGLALLEAVRQ 75 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHh-----------hccCCCEEEEeccCCCCcHHHHHHHHHh
Confidence 47899999999999999999999999999999999999988 4457999999999999999999999997
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVK 210 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~ 210 (213)
. .+.+|||++|+..+.....+++..|+.+|+.||.+
T Consensus 76 ~--~~~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~ 111 (665)
T PRK13558 76 T--TAVPPVVVVPTAGDEAVARRAVDADAAAYVPAVSD 111 (665)
T ss_pred c--CCCCCEEEEECCCCHHHHHHHHhcCcceEEeccch
Confidence 5 57899999999999999999999999999999964
No 59
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.56 E-value=4.5e-14 Score=121.02 Aligned_cols=103 Identities=36% Similarity=0.498 Sum_probs=92.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC--CEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISS--CKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g--~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
+|||||||+...|..++.+|...| ..|..+.||.+|++.+ ....||+|++|+.||.|||+++++.|-
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~-----------~~~~PDVi~ld~emp~mdgl~~l~~im 70 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKV-----------KKLKPDVITLDVEMPVMDGLEALRKIM 70 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHH-----------HhcCCCEEEEecccccccHHHHHHHHh
Confidence 589999999999999999999998 5678999999999999 566899999999999999999999998
Q ss_pred hcCCCCCCcEEEEecCCC--HHHHHHHHHcCCCeeeeCCCC
Q 048660 172 ESSVFREVPVVIMSSEDV--LTQIDSCLEEGAEEYIVKPVK 210 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~--~~~~~~~~~~G~~~~L~KP~~ 210 (213)
+. ..+|||++++-.. .+...++++.|+.||+.||..
T Consensus 71 ~~---~p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 71 RL---RPLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred cC---CCCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 74 5899999987543 467788999999999999974
No 60
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.56 E-value=7.4e-14 Score=110.12 Aligned_cols=103 Identities=26% Similarity=0.442 Sum_probs=91.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-CCE-EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQIS-SCK-VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~-g~~-v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
.+||+|||++..+..+...|... ++. +..+.++.++++.+ ....||+|++|+.||+++|+++++.++
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~dlvi~d~~~~~~~g~~~~~~l~ 70 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGL-----------PGRGVQVCICDISMPDISGLELLSQLP 70 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHc
Confidence 47999999999999999999754 565 56889999999988 445799999999999999999999986
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+|+|++|...+......+++.|+++|+.||++.+
T Consensus 71 ~-----~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~ 106 (196)
T PRK10360 71 K-----GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPD 106 (196)
T ss_pred c-----CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHH
Confidence 3 47899999999999999999999999999998754
No 61
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.55 E-value=9.4e-14 Score=120.80 Aligned_cols=104 Identities=33% Similarity=0.450 Sum_probs=91.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc-CCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQIS-SCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
.++||||||+..++..+...|... |+.+. .+.++.++++.+ ....||+|++|+.||+++|+++++.|
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~-----------~~~~~DlVllD~~mp~~dgle~l~~i 71 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKI-----------KKLNPDVITLDVEMPVMDGLDALEKI 71 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHH-----------hhhCCCEEEEeCCCCCCChHHHHHHH
Confidence 469999999999999999999876 78776 899999999988 44579999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCC--CHHHHHHHHHcCCCeeeeCCCC
Q 048660 171 KESSVFREVPVVIMSSED--VLTQIDSCLEEGAEEYIVKPVK 210 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~--~~~~~~~~~~~G~~~~L~KP~~ 210 (213)
++.. + +|+|++|+.. ......++++.|+++||.||++
T Consensus 72 ~~~~--~-~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 72 MRLR--P-TPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred HHhC--C-CCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 9863 3 8999999754 3456778999999999999984
No 62
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.55 E-value=9.8e-14 Score=108.74 Aligned_cols=106 Identities=29% Similarity=0.428 Sum_probs=97.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
+.+||++||++..+..+...|...|+.+..+.++.++++.+ ....||++++|+.+|+++|+++++.+++
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~d~ii~d~~~~~~~~~~~~~~l~~ 71 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDAL-----------PGLRFGCVVTDVRMPGIDGIELLRRLKA 71 (202)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHh-----------ccCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 46899999999999999999999999999999999999887 4557999999999999999999999997
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKL 211 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~ 211 (213)
. .+.+|+|++|+..+......++..|+.+|+.||++.
T Consensus 72 ~--~~~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~ 108 (202)
T PRK09390 72 R--GSPLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFED 108 (202)
T ss_pred c--CCCCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCH
Confidence 5 578999999999998999999999999999999874
No 63
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.55 E-value=7.1e-14 Score=123.74 Aligned_cols=108 Identities=29% Similarity=0.483 Sum_probs=98.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||+|||++..+..+...|...|+.+..+.++.++++.+ ....||+|++|+.||+++|.++++.+++.
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvi~d~~~~~~~g~~l~~~i~~~ 71 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAIC-----------EREQPDIILLDVMMPGMDGFEVCRRLKSD 71 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHH-----------hhcCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 3799999999999999999998999999999999999988 44579999999999999999999999975
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
...+.+|||++|+..+.....+++..|+++|+.||++.+
T Consensus 72 ~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~ 110 (457)
T PRK09581 72 PATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDV 110 (457)
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHH
Confidence 444679999999999999999999999999999999754
No 64
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.55 E-value=7.3e-14 Score=133.70 Aligned_cols=107 Identities=11% Similarity=0.162 Sum_probs=95.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
.+.+||||||++..+..+...|...||.+..+.++.++++.+.. ....||+||+ .||+++|+++++.|+
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~---------~~~~~DlVll--~~~~~~g~~l~~~l~ 764 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISK---------GPERFDLVLV--DDRLLDEEQAAAALH 764 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh---------CCCCceEEEE--CCCCCCHHHHHHHHH
Confidence 34689999999999999999999999999999999999998842 1235899999 799999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+. .+.+|||++|+........+++..| ++||.||++.+
T Consensus 765 ~~--~~~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~ 802 (828)
T PRK13837 765 AA--APTLPIILGGNSKTMALSPDLLASV-AEILAKPISSR 802 (828)
T ss_pred hh--CCCCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHH
Confidence 76 5789999999999999999999999 99999999864
No 65
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.55 E-value=5.8e-14 Score=114.72 Aligned_cols=103 Identities=26% Similarity=0.408 Sum_probs=86.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC-E-EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSC-K-VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~-~-v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
++|||+||++..+..+..+|+..|. . +..+.++.++++.+ ....||++|+|+.||+++|+++++.++
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~dlv~lDi~~~~~~G~~~~~~l~ 70 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAI-----------HRLKPDVVFLDIQMPRISGLELVGMLD 70 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHhc
Confidence 5899999999999999999998874 3 45789999999987 344799999999999999999999996
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.. ...+||++|+.. +...++++.|+.+||.||++.+
T Consensus 71 ~~---~~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~ 106 (238)
T PRK11697 71 PE---HMPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPA 106 (238)
T ss_pred cc---CCCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHH
Confidence 42 244688888765 4667899999999999998753
No 66
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.52 E-value=6.3e-13 Score=95.64 Aligned_cols=110 Identities=35% Similarity=0.562 Sum_probs=96.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCC-EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSC-KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~-~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
+..+||++++++.....+...|+..|+ .+..+.++.+++..+ ....+|++++|..+++++|+++++.+
T Consensus 4 ~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~di~l~d~~~~~~~~~~~~~~l 72 (129)
T PRK10610 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGGFGFVISDWNMPNMDGLELLKTI 72 (129)
T ss_pred ccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHh-----------hccCCCEEEEcCCCCCCCHHHHHHHH
Confidence 346899999999999999999999898 477889999999887 44578999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
++....+.+|+++++..........+++.|+++|+.||++.+
T Consensus 73 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~ 114 (129)
T PRK10610 73 RADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 114 (129)
T ss_pred HhCCCcCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHH
Confidence 986445678999999988888889999999999999998754
No 67
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.51 E-value=1.4e-13 Score=112.10 Aligned_cols=104 Identities=8% Similarity=0.073 Sum_probs=84.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHH-HHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELL-KKI 170 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~-~~i 170 (213)
...++++|||++..+..|+.+|...-..+..+.++.++++.+ . .||+||+|+.||+++|++++ +.|
T Consensus 9 ~~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~-----------~--~~DvvllDi~~p~~~G~~~~~~~i 75 (216)
T PRK10100 9 HGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDI-----------S--SGSIILLDMMEADKKLIHYWQDTL 75 (216)
T ss_pred cCceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccC-----------C--CCCEEEEECCCCCccHHHHHHHHH
Confidence 456899999999999999999984333456788999998865 3 38999999999999999997 567
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHH--cCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLE--EGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~--~G~~~~L~KP~~~~ 212 (213)
++. .+.++||++|+..+. ...++. +|+.+|+.|+.+.+
T Consensus 76 ~~~--~p~~~vvvlt~~~~~--~~~~~~~~~Ga~G~l~K~~~~~ 115 (216)
T PRK10100 76 SRK--NNNIKILLLNTPEDY--PYREIENWPHINGVFYAMEDQE 115 (216)
T ss_pred HHh--CCCCcEEEEECCchh--HHHHHHHhcCCeEEEECCCCHH
Confidence 865 678999999998763 334444 59999999987654
No 68
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.48 E-value=8.5e-13 Score=104.90 Aligned_cols=108 Identities=25% Similarity=0.470 Sum_probs=94.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhc-CCEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQIS-SCKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~-g~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
...+||+|||++..+..+...|... ++.+ ..+.++.+++..+ ....||++++|+.+|+++|+++++.
T Consensus 5 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~dlvl~d~~l~~~~~~~~~~~ 73 (216)
T PRK10651 5 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELA-----------ESLDPDLILLDLNMPGMNGLETLDK 73 (216)
T ss_pred cceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHH-----------HhCCCCEEEEeCCCCCCcHHHHHHH
Confidence 4578999999999999999999865 5654 4689999999988 4457999999999999999999999
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+++. .+..|+|+++...+......+++.|+++|+.||++.+
T Consensus 74 l~~~--~~~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~ 114 (216)
T PRK10651 74 LREK--SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPE 114 (216)
T ss_pred HHHh--CCCCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHH
Confidence 9986 4678999999999999999999999999999998753
No 69
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.48 E-value=3.2e-13 Score=109.29 Aligned_cols=95 Identities=14% Similarity=0.223 Sum_probs=79.3
Q ss_pred HHHHHHHHHhh---cCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEE---EeCCCCCCCHHHHHHHHHhcCCCCC
Q 048660 105 DRKLIERLLQI---SSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLII---TDYTMPGMTGYELLKKIKESSVFRE 178 (213)
Q Consensus 105 ~~~~l~~~L~~---~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil---~D~~mp~~~G~e~~~~ir~~~~~~~ 178 (213)
.|..++.+|+. .|+.+..+.++.++++.+ ....||++| +|+.||+++|++++++|++. .+.
T Consensus 2 ~r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~-----------~~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~--~p~ 68 (207)
T PRK11475 2 SSIGIESLFRKFPGNPYKLHTFSSQSSFQDAM-----------SRISFSAVIFSLSAMRSERREGLSCLTELAIK--FPR 68 (207)
T ss_pred chHHHHHHHhcCCCCeeEEEEeCCHHHHHHHh-----------ccCCCCEEEeeccccCCCCCCHHHHHHHHHHH--CCC
Confidence 36788888865 366678999999999987 455789998 68899999999999999986 678
Q ss_pred CcEEEEecCCCHHHHHHHH-HcCCCeeeeCCCCCC
Q 048660 179 VPVVIMSSEDVLTQIDSCL-EEGAEEYIVKPVKLS 212 (213)
Q Consensus 179 ~pII~lt~~~~~~~~~~~~-~~G~~~~L~KP~~~~ 212 (213)
+|||++|+..+......++ ++|+++||.||++.+
T Consensus 69 ~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~ 103 (207)
T PRK11475 69 MRRLVIADDDIEARLIGSLSPSPLDGVLSKASTLE 103 (207)
T ss_pred CCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHH
Confidence 9999999987776555555 799999999998764
No 70
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.47 E-value=9e-13 Score=104.54 Aligned_cols=106 Identities=24% Similarity=0.461 Sum_probs=93.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh-cCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQI-SSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~-~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
..+||++||++..+..+...|+. .++.+. .+.++.++++.+ ....||++++|+.+|+++|.++++.+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~dlvi~d~~~~~~~~~~~~~~l 74 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLA-----------NRLDPDVILLDLNMKGMSGLDTLNAL 74 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-----------HhcCCCEEEEecCCCCCcHHHHHHHH
Confidence 46899999999999999999975 577765 689999999887 44579999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKL 211 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~ 211 (213)
++. .+..|+++++..........+++.|+++|+.||++.
T Consensus 75 ~~~--~~~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~ 113 (215)
T PRK10403 75 RRD--GVTAQIIILTVSDASSDVFALIDAGADGYLLKDSDP 113 (215)
T ss_pred HHh--CCCCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCH
Confidence 976 467899999998888888999999999999999874
No 71
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.47 E-value=2e-12 Score=101.79 Aligned_cols=106 Identities=20% Similarity=0.386 Sum_probs=93.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc-CCEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQIS-SCKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~-g~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
..+||++||++..+..+...|... ++.+ ..+.++.++++.+ ....||+|++|+.+++++|+++++.+
T Consensus 3 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~dlvl~d~~~~~~~~~~~~~~l 71 (211)
T PRK15369 3 NYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNAC-----------RQLEPDIVILDLGLPGMNGLDVIPQL 71 (211)
T ss_pred ccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 468999999999999999999876 4654 4789999999877 44579999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKL 211 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~ 211 (213)
++. .+..|+|++|+..+......++..|+++|+.||++.
T Consensus 72 ~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~ 110 (211)
T PRK15369 72 HQR--WPAMNILVLTARQEEHMASRTLAAGALGYVLKKSPQ 110 (211)
T ss_pred HHH--CCCCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCH
Confidence 986 467899999999999999999999999999999874
No 72
>PRK13435 response regulator; Provisional
Probab=99.45 E-value=1.3e-12 Score=98.92 Aligned_cols=103 Identities=23% Similarity=0.273 Sum_probs=88.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC-CCCHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP-GMTGYELLKKI 170 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp-~~~G~e~~~~i 170 (213)
..+|||+|++......+...|+..|+.+. .++++.++++.+ ....||++++|+.++ +.+|.++++.+
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~dliivd~~~~~~~~~~~~~~~l 73 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALG-----------RRRQPDVALVDVHLADGPTGVEVARRL 73 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHh-----------hhcCCCEEEEeeecCCCCcHHHHHHHH
Confidence 57899999999999999999998899876 789999999887 344799999999998 58999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
++. +.+|+|++++..+ ...++..|+++|+.||++.+
T Consensus 74 ~~~---~~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~ 109 (145)
T PRK13435 74 SAD---GGVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPR 109 (145)
T ss_pred HhC---CCCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHH
Confidence 863 4789999997643 34678899999999999754
No 73
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.45 E-value=4.7e-13 Score=105.11 Aligned_cols=107 Identities=27% Similarity=0.327 Sum_probs=89.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCE-EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCK-VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~-v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
..++||++||++..+..+...|...||. |.++.++.++.+.. ....||+||+|+.||..|-.+.....
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~-----------~~~~pDvVildie~p~rd~~e~~~~~ 72 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVC-----------ERLQPDVVILDIEMPRRDIIEALLLA 72 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHH-----------HhcCCCEEEEecCCCCccHHHHHHHh
Confidence 3579999999999999999999999995 55778888888877 55689999999999999933333222
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .....|||++|++++++..+.+.++|+.+|+.||++..
T Consensus 73 ~---~~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~ 111 (194)
T COG3707 73 S---ENVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDES 111 (194)
T ss_pred h---cCCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchh
Confidence 2 24678999999999999999999999999999999753
No 74
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.43 E-value=1.3e-12 Score=105.71 Aligned_cols=104 Identities=11% Similarity=0.095 Sum_probs=85.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCC---EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC--CCCCCHHHHHHH
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSC---KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT--MPGMTGYELLKK 169 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~---~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~--mp~~~G~e~~~~ 169 (213)
.||||||++..+..++.+|+..++ .+..+.++.++++.+ ....||++|+|+. +++++|.++++.
T Consensus 2 ~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~-----------~~~~pDlvLlDl~~~l~~~~g~~~i~~ 70 (207)
T PRK15411 2 STIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIAC-----------DSLRPSVVFINEDCFIHDASNSQRIKQ 70 (207)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHH-----------hccCCCEEEEeCcccCCCCChHHHHHH
Confidence 589999999999999999986553 456789999999987 4457999999966 888899999999
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCe-eeeCCCCCC
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEE-YIVKPVKLS 212 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~-~L~KP~~~~ 212 (213)
|++. .+.++||++|+..+..... ++..|... |+.|+.+.+
T Consensus 71 i~~~--~p~~~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~ 111 (207)
T PRK15411 71 IINQ--HPNTLFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPE 111 (207)
T ss_pred HHHH--CCCCeEEEEECCCchhHHH-HHHHHhhceeeeccCCHH
Confidence 9976 6789999999987766543 55556554 889987754
No 75
>PRK13557 histidine kinase; Provisional
Probab=99.43 E-value=2.3e-12 Score=116.43 Aligned_cols=108 Identities=21% Similarity=0.286 Sum_probs=96.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CCHHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MTGYELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~G~e~~~~ir 171 (213)
..+||+++|++..+..+..+|+..||.+..+.++.++++.+. ....||++++|..||+ ++|+++++.|+
T Consensus 415 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~----------~~~~~d~vi~d~~~~~~~~~~~~~~~l~ 484 (540)
T PRK13557 415 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILD----------SHPEVDLLFTDLIMPGGMNGVMLAREAR 484 (540)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHh----------cCCCceEEEEeccCCCCCCHHHHHHHHH
Confidence 458999999999999999999999999999999999999873 2235999999999997 99999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+. .+.+|+|++|..........++..|+.+|+.||++.+
T Consensus 485 ~~--~~~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~ 523 (540)
T PRK13557 485 RR--QPKIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRA 523 (540)
T ss_pred Hh--CCCCcEEEEcCCCchhhhhhhccccCCceeeCCCCHH
Confidence 86 4678999999998888888899999999999999754
No 76
>PRK09191 two-component response regulator; Provisional
Probab=99.37 E-value=7.8e-12 Score=103.47 Aligned_cols=105 Identities=19% Similarity=0.283 Sum_probs=88.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CCHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MTGYELLKK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~G~e~~~~ 169 (213)
-..+||++||++..+..+...|+..|+.+. .+.++.++++.+ ....||+|++|+.||+ ++|+++++.
T Consensus 136 ~~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l-----------~~~~~dlvi~d~~~~~~~~g~e~l~~ 204 (261)
T PRK09191 136 VATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALA-----------KKTRPGLILADIQLADGSSGIDAVND 204 (261)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHH-----------hccCCCEEEEecCCCCCCCHHHHHHH
Confidence 345899999999999999999999999887 789999999988 4457999999999995 899999999
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+++. . .+|+|++|+....... ....|+.+|+.||++.+
T Consensus 205 l~~~--~-~~pii~ls~~~~~~~~--~~~~~~~~~l~kP~~~~ 242 (261)
T PRK09191 205 ILKT--F-DVPVIFITAFPERLLT--GERPEPAFLITKPFQPD 242 (261)
T ss_pred HHHh--C-CCCEEEEeCCCcHHHH--HHhcccCceEECCCCHH
Confidence 9976 3 7899999997665433 34567889999999854
No 77
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.29 E-value=7.5e-11 Score=81.14 Aligned_cols=102 Identities=34% Similarity=0.590 Sum_probs=91.0
Q ss_pred EEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCC
Q 048660 97 LAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVF 176 (213)
Q Consensus 97 LvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~ 176 (213)
|++++++..+..+...|...|+.+..+.+..+++..+ ....+|++++|..+++.+|.++++.+++. .
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ii~~~~~~~~~~~~~~~~l~~~--~ 67 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALL-----------AEEKPDLILLDIMMPGMDGLELLRRIRKR--G 67 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHH-----------HhCCCCEEEEecCCCCCchHHHHHHHHHh--C
Confidence 4789999999999999999999999999999999887 34578999999999999999999999986 5
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCC
Q 048660 177 REVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKL 211 (213)
Q Consensus 177 ~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~ 211 (213)
+.+|+++++..........++..|+.+|+.||++.
T Consensus 68 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~ 102 (113)
T cd00156 68 PDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSP 102 (113)
T ss_pred CCCCEEEEEecccHHHHHHHHHcChhhHccCCCCH
Confidence 67899999988777788889999999999999874
No 78
>PRK10693 response regulator of RpoS; Provisional
Probab=99.27 E-value=2.8e-11 Score=103.34 Aligned_cols=76 Identities=30% Similarity=0.595 Sum_probs=69.3
Q ss_pred EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCC
Q 048660 122 AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGA 201 (213)
Q Consensus 122 ~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~ 201 (213)
.+.++.+|++.+ ....||+||+|+.||+++|+++++.+++. .+.+|||++|+..+.+...+++++|+
T Consensus 2 ~a~~g~~al~~l-----------~~~~pDlVL~D~~mp~~~Gle~~~~ir~~--~~~ipiI~lt~~~~~~~~~~al~~Ga 68 (303)
T PRK10693 2 LAANGVDALELL-----------GGFTPDLIICDLAMPRMNGIEFVEHLRNR--GDQTPVLVISATENMADIAKALRLGV 68 (303)
T ss_pred EeCCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHhc--CCCCcEEEEECCCCHHHHHHHHHCCC
Confidence 478899999988 44579999999999999999999999986 46799999999999999999999999
Q ss_pred CeeeeCCCC
Q 048660 202 EEYIVKPVK 210 (213)
Q Consensus 202 ~~~L~KP~~ 210 (213)
++|+.||++
T Consensus 69 ~dyl~KP~~ 77 (303)
T PRK10693 69 QDVLLKPVK 77 (303)
T ss_pred cEEEECCCC
Confidence 999999984
No 79
>PRK15029 arginine decarboxylase; Provisional
Probab=99.26 E-value=3.5e-11 Score=113.07 Aligned_cols=82 Identities=18% Similarity=0.311 Sum_probs=74.6
Q ss_pred EEEEEeCCHH--------HHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCC-CceeEEEEeCCCCCCCHH-
Q 048660 95 HVLAVDDSYV--------DRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDA-LKVNLIITDYTMPGMTGY- 164 (213)
Q Consensus 95 ~ILvVdD~~~--------~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~-~~~dlil~D~~mp~~~G~- 164 (213)
+||||||+.. .++.++..|+..||.|..+.++.+|++.+ .. ..||+||+|+.||+++|+
T Consensus 2 kILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l-----------~~~~~~DlVLLD~~LPd~dG~~ 70 (755)
T PRK15029 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAIL-----------SSNEAIDCLMFSYQMEHPDEHQ 70 (755)
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------HhcCCCcEEEEECCCCCCccch
Confidence 6999999995 69999999999999999999999999998 33 479999999999999997
Q ss_pred ---HHHHHHHhcCCCCCCcEEEEecCCC
Q 048660 165 ---ELLKKIKESSVFREVPVVIMSSEDV 189 (213)
Q Consensus 165 ---e~~~~ir~~~~~~~~pII~lt~~~~ 189 (213)
++++.||+. ..++|||++|+..+
T Consensus 71 ~~~ell~~IR~~--~~~iPIIlLTar~~ 96 (755)
T PRK15029 71 NVRQLIGKLHER--QQNVPVFLLGDREK 96 (755)
T ss_pred hHHHHHHHHHhh--CCCCCEEEEEcCCc
Confidence 899999975 46899999999885
No 80
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.00 E-value=1.8e-09 Score=89.53 Aligned_cols=104 Identities=31% Similarity=0.494 Sum_probs=86.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-CC-EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQIS-SC-KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~-g~-~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
++|+++||++..++.+..++... .+ .+..+.++.++++.+ ....+|++++|+.||+++|+++.+.|+
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~fldI~~~~~~G~ela~~i~ 70 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLL-----------QGLRPDLVFLDIAMPDINGIELAARIR 70 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHH-----------hccCCCeEEEeeccCccchHHHHHHhc
Confidence 57999999999999999999843 22 233788999999988 445899999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.. .+..+|+++|++. +....+++..+-+|+.||++.+
T Consensus 71 ~~--~~~~~Ivfvt~~~--~~a~~afev~a~d~i~kp~~~~ 107 (244)
T COG3279 71 KG--DPRPAIVFVTAHD--EYAVAAFEVEALDYLLKPISEE 107 (244)
T ss_pred cc--CCCCeEEEEEehH--HHHHHHHhHHHHhhhcCcchHH
Confidence 85 5677899999985 4566677888999999998643
No 81
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.91 E-value=9.4e-09 Score=99.11 Aligned_cols=105 Identities=10% Similarity=0.097 Sum_probs=87.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
.+.+||++||++..+..+..+|+.+|+.+..+.++.+ + ....||++++|+.||++++...+....
T Consensus 535 ~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l-----------~~~~~d~il~~~~~~~~~~~~~~~~~~ 599 (919)
T PRK11107 535 AGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----L-----------PEAHYDILLLGLPVTFREPLTMLHERL 599 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----h-----------ccCCCCEEEecccCCCCCCHHHHHHHH
Confidence 4579999999999999999999999999999999877 2 334699999999999887776555444
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKL 211 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~ 211 (213)
........++++++..........+.+.|+++|+.||++.
T Consensus 600 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~ 639 (919)
T PRK11107 600 AKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSH 639 (919)
T ss_pred HhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCH
Confidence 3322345578888888888889999999999999999875
No 82
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.45 E-value=1.7e-07 Score=83.08 Aligned_cols=79 Identities=30% Similarity=0.470 Sum_probs=70.5
Q ss_pred CEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHH
Q 048660 118 CKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCL 197 (213)
Q Consensus 118 ~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~ 197 (213)
+.|..+.+|.+|+..+ ....+|.+++|+.||+++|+++++.+++... .++++|.........+.+
T Consensus 13 ~~v~~a~~g~~~l~~~-----------~~~~~~~~lld~~m~~~~~~~~~~~lk~~~~----~~v~~t~~~~~~~~~~~~ 77 (435)
T COG3706 13 KEVATAKKGLIALAIL-----------LDHKPDYKLLDVMMPGMDGFELCRRLKAEPA----TVVMVTALDDSAPRVRGL 77 (435)
T ss_pred hhhhhccchHHHHHHH-----------hcCCCCeEEeecccCCcCchhHHHHHhcCCc----ceEEEEecCCCCcchhHH
Confidence 4666799999999988 5678999999999999999999999998642 288899999999999999
Q ss_pred HcCCCeeeeCCCCC
Q 048660 198 EEGAEEYIVKPVKL 211 (213)
Q Consensus 198 ~~G~~~~L~KP~~~ 211 (213)
++|++++|+||++.
T Consensus 78 ~~~~~~~l~~~~~~ 91 (435)
T COG3706 78 KAGADDFLTKPVND 91 (435)
T ss_pred hhhhhhhccCCCCh
Confidence 99999999999874
No 83
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.98 E-value=6.1e-05 Score=44.19 Aligned_cols=54 Identities=35% Similarity=0.536 Sum_probs=47.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP 159 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp 159 (213)
+++++++++..+..+...+...|+.+..+.++.+++..+ ....++++++|+.++
T Consensus 2 ~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~vi~~~~~~ 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELL-----------KEEKPDLILLDIMMP 55 (55)
T ss_pred eEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHH-----------HhcCCCEEEEeccCC
Confidence 689999999999999999999999999999999999887 334689999998654
No 84
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=97.96 E-value=1.2e-05 Score=78.06 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=43.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM 158 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m 158 (213)
.+.+||||||++.++..+..+|+++|+.|..+.++ . ....||+||+|+.+
T Consensus 688 ~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~------~-----------~~~~~Dlvl~D~~~ 737 (894)
T PRK10618 688 DGVTVLLDITSEEVRKIVTRQLENWGATCITPDER------L-----------ISQEYDIFLTDNPS 737 (894)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCcc------c-----------cCCCCCEEEECCCC
Confidence 45799999999999999999999999999988763 1 33469999999984
No 85
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.57 E-value=0.0006 Score=49.52 Aligned_cols=96 Identities=18% Similarity=0.196 Sum_probs=64.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCcee-EEEEeCCCCCCCHHHHHHHHHhc
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVN-LIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~d-lil~D~~mp~~~G~e~~~~ir~~ 173 (213)
||||||||...+..|..+|+=.|+.+..+.+.+- .... .....+ +++.....+ ...+.++.+.+.
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~-----------~~~~~~~~~v~~g~~~--~~~~~l~~l~~~ 66 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQAD-----------WSSPWEACAVILGSCS--KLAELLKELLKW 66 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhh-----------hhcCCcEEEEEecCch--hHHHHHHHHHhh
Confidence 6999999999999999999999999888876443 2222 112233 334333333 456677777766
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKL 211 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~ 211 (213)
.+.+|++++.......... .+-+-|..|++.
T Consensus 67 --~~~~Pvlllg~~~~~~~~~-----nvvg~Le~Pl~Y 97 (109)
T PF06490_consen 67 --APHIPVLLLGEHDSPEELP-----NVVGELEEPLNY 97 (109)
T ss_pred --CCCCCEEEECCCCcccccc-----CeeEecCCCCCH
Confidence 6899999998876551111 155667777763
No 86
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=97.42 E-value=0.0032 Score=46.51 Aligned_cols=95 Identities=16% Similarity=0.045 Sum_probs=68.8
Q ss_pred eCCHHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC--CHHHHHHHHHhcC
Q 048660 100 DDSYVDRKLIERLLQISSCKVTAVE---SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM--TGYELLKKIKESS 174 (213)
Q Consensus 100 dD~~~~~~~l~~~L~~~g~~v~~a~---~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~--~G~e~~~~ir~~~ 174 (213)
|.+..=..++..+|+..||+|.... ..++.++.+ ....+|+|.+-..++.. .-.++++.+++..
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a-----------~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAA-----------IQEDVDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 5666667778888999999988653 466777776 44579999998877642 2345677777753
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeC
Q 048660 175 VFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVK 207 (213)
Q Consensus 175 ~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~K 207 (213)
+....+++.+....+...++.++|+++|+..
T Consensus 79 --~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~ 109 (122)
T cd02071 79 --AGDILVVGGGIIPPEDYELLKEMGVAEIFGP 109 (122)
T ss_pred --CCCCEEEEECCCCHHHHHHHHHCCCCEEECC
Confidence 3234466776666777889999999999865
No 87
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=97.04 E-value=0.012 Score=42.90 Aligned_cols=94 Identities=15% Similarity=0.230 Sum_probs=66.5
Q ss_pred eCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC--CCHHHHHHHHHhcC
Q 048660 100 DDSYVDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG--MTGYELLKKIKESS 174 (213)
Q Consensus 100 dD~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~--~~G~e~~~~ir~~~ 174 (213)
|.+..-..++..+|+..||+|... ...++.++.+ .+..||+|.+-..+.. ....++++.+|+..
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~-----------~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~ 78 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAA-----------KEEDADAIGLSGLLTTHMTLMKEVIEELKEAG 78 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEeccccccHHHHHHHHHHHHHcC
Confidence 556666788899999999998654 3456666766 4568999999887654 34567888888763
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 175 VFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 175 ~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
. .+++ |++.+.........+.+.|+|.|+.
T Consensus 79 ~-~~~~-i~vGG~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 79 L-DDIP-VLVGGAIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred C-CCCe-EEEECCCCChhHHHHHHcCCeEEEC
Confidence 1 2555 5566655555556788999988765
No 88
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=96.88 E-value=0.023 Score=42.66 Aligned_cols=101 Identities=15% Similarity=0.088 Sum_probs=69.9
Q ss_pred cEEEEE----eCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CC-HH
Q 048660 94 LHVLAV----DDSYVDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MT-GY 164 (213)
Q Consensus 94 ~~ILvV----dD~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~-G~ 164 (213)
.||++. |-+..-...+..+|+..||+|... .+.++.++.+ .+..+|+|.+...+.. +. --
T Consensus 3 ~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa-----------~e~~adii~iSsl~~~~~~~~~ 71 (132)
T TIGR00640 3 PRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQA-----------VEADVHVVGVSSLAGGHLTLVP 71 (132)
T ss_pred CEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEcCchhhhHHHHH
Confidence 455555 456666778888999999998754 4577777777 4457889888766643 22 34
Q ss_pred HHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeC
Q 048660 165 ELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVK 207 (213)
Q Consensus 165 e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~K 207 (213)
++++.|++.. ...++ |++.+....++...+.++|+++|+..
T Consensus 72 ~~~~~L~~~g-~~~i~-vivGG~~~~~~~~~l~~~Gvd~~~~~ 112 (132)
T TIGR00640 72 ALRKELDKLG-RPDIL-VVVGGVIPPQDFDELKEMGVAEIFGP 112 (132)
T ss_pred HHHHHHHhcC-CCCCE-EEEeCCCChHhHHHHHHCCCCEEECC
Confidence 4677777753 23444 55566566777888999999999864
No 89
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=96.80 E-value=0.0071 Score=44.25 Aligned_cols=89 Identities=17% Similarity=0.262 Sum_probs=65.6
Q ss_pred HHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC--CCHHHHHHHHHhcCCCCCCcEEE
Q 048660 106 RKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG--MTGYELLKKIKESSVFREVPVVI 183 (213)
Q Consensus 106 ~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~--~~G~e~~~~ir~~~~~~~~pII~ 183 (213)
...|...|++.|+.|+.+.+.++++..++ ....+..|++|+. ++ ....++++.||+. ...+||.+
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~----------~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~--~~~iPVFl 72 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIE----------SFTDIAAVVISWD-GEEEDEAQELLDKIRER--NFGIPVFL 72 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHH----------CTTTEEEEEEECH-HHHHHHHHHHHHHHHHH--STT-EEEE
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHH----------hCCCeeEEEEEcc-cccchhHHHHHHHHHHh--CCCCCEEE
Confidence 34577778889999999999999999996 3457899999986 22 2356789999987 67999999
Q ss_pred EecCCCHHHHHHHHHcCCCeeeeC
Q 048660 184 MSSEDVLTQIDSCLEEGAEEYIVK 207 (213)
Q Consensus 184 lt~~~~~~~~~~~~~~G~~~~L~K 207 (213)
++.....+......-..+++|+..
T Consensus 73 ~~~~~~~~~l~~~~l~~v~~~i~l 96 (115)
T PF03709_consen 73 LAERDTTEDLPAEVLGEVDGFIWL 96 (115)
T ss_dssp EESCCHHHCCCHHHHCCESEEEET
T ss_pred EecCCCcccCCHHHHhhccEEEEe
Confidence 998764444444444456666654
No 90
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=96.65 E-value=0.045 Score=41.36 Aligned_cols=104 Identities=13% Similarity=0.073 Sum_probs=74.6
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC--CH
Q 048660 93 ELHVLAV----DDSYVDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM--TG 163 (213)
Q Consensus 93 ~~~ILvV----dD~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~--~G 163 (213)
+.+||+. |.+..-...+..+|+..||+|+.. ...++.++.+ .+..+|+|.+...+... ..
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a-----------~~~~~d~V~lS~~~~~~~~~~ 71 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAA-----------IETDADAILVSSLYGHGEIDC 71 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEcCccccCHHHH
Confidence 4578887 778888888999999999998865 3466777766 45689999999888753 35
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCC------CHHHHHHHHHcCCCeeeeCCC
Q 048660 164 YELLKKIKESSVFREVPVVIMSSED------VLTQIDSCLEEGAEEYIVKPV 209 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~------~~~~~~~~~~~G~~~~L~KP~ 209 (213)
.++++.+++.. .++++ |++.+.. ..+...++.+.|++.+....-
T Consensus 72 ~~~~~~L~~~~-~~~~~-i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~ 121 (137)
T PRK02261 72 RGLREKCIEAG-LGDIL-LYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGT 121 (137)
T ss_pred HHHHHHHHhcC-CCCCe-EEEECCCCCCccChHHHHHHHHHcCCCEEECcCC
Confidence 56788888763 33554 4455543 345667899999988776543
No 91
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=95.99 E-value=0.11 Score=41.69 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=69.4
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC--CH
Q 048660 93 ELHVLAV----DDSYVDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM--TG 163 (213)
Q Consensus 93 ~~~ILvV----dD~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~--~G 163 (213)
..+||+. |-+..=..++..+|+..||+|... ...++.++.+ ....||+|-+...|... ..
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~-----------~~~~~d~v~lS~~~~~~~~~~ 150 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAV-----------KEHKPDILGLSALMTTTMGGM 150 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEeccccccHHHH
Confidence 4578777 667777888999999999998753 3466777777 45689999999977653 35
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
.++++.+|+.+...+++|++ .+..-... -+...|+|.|-
T Consensus 151 ~~~i~~lr~~~~~~~~~i~v-GG~~~~~~--~~~~~GaD~~~ 189 (201)
T cd02070 151 KEVIEALKEAGLRDKVKVMV-GGAPVNQE--FADEIGADGYA 189 (201)
T ss_pred HHHHHHHHHCCCCcCCeEEE-ECCcCCHH--HHHHcCCcEEE
Confidence 56788888864333666654 44333332 46677998874
No 92
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=95.94 E-value=0.12 Score=37.50 Aligned_cols=92 Identities=14% Similarity=0.202 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC-CCCCC-CHHHHHHHHHhcCC
Q 048660 101 DSYVDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDY-TMPGM-TGYELLKKIKESSV 175 (213)
Q Consensus 101 D~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~-~mp~~-~G~e~~~~ir~~~~ 175 (213)
-.+.-...+..+|++.||+|... .+.++..+.+ ...+||+|.+.. ..+.. ...++++.+|+.
T Consensus 12 ~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~-----------~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~-- 78 (121)
T PF02310_consen 12 VHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEAL-----------RAERPDVVGISVSMTPNLPEAKRLARAIKER-- 78 (121)
T ss_dssp STSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHH-----------HHTTCSEEEEEESSSTHHHHHHHHHHHHHTT--
T ss_pred chhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHH-----------hcCCCcEEEEEccCcCcHHHHHHHHHHHHhc--
Confidence 34666788999999999999876 3346666666 345799999998 44443 356677777765
Q ss_pred CCCCcEEEEecCCCHHHHHHHHH--cCCCeeee
Q 048660 176 FREVPVVIMSSEDVLTQIDSCLE--EGAEEYIV 206 (213)
Q Consensus 176 ~~~~pII~lt~~~~~~~~~~~~~--~G~~~~L~ 206 (213)
.++++++ +.+.........+++ .|+|..+.
T Consensus 79 ~p~~~iv-~GG~~~t~~~~~~l~~~~~~D~vv~ 110 (121)
T PF02310_consen 79 NPNIPIV-VGGPHATADPEEILREYPGIDYVVR 110 (121)
T ss_dssp CTTSEEE-EEESSSGHHHHHHHHHHHTSEEEEE
T ss_pred CCCCEEE-EECCchhcChHHHhccCcCcceecC
Confidence 4566655 555444444555555 68876554
No 93
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=95.16 E-value=0.25 Score=40.11 Aligned_cols=100 Identities=12% Similarity=0.145 Sum_probs=68.2
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-C-CH
Q 048660 93 ELHVLAV----DDSYVDRKLIERLLQISSCKVTAVE---SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-M-TG 163 (213)
Q Consensus 93 ~~~ILvV----dD~~~~~~~l~~~L~~~g~~v~~a~---~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~-~G 163 (213)
..+|++. |.+..=..++..+|+..||+|.-.. ..++.++.+ .+.++|+|.+...|+. + .-
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~-----------~~~~~~~V~lS~~~~~~~~~~ 156 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAA-----------KEHKADIIGLSGLLVPSLDEM 156 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEccchhccHHHH
Confidence 4577777 7777778888889999999998653 466777777 4568999999998865 2 34
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHH---HHHcCCCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDS---CLEEGAEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~---~~~~G~~~~L 205 (213)
.++++.|++. ..+++|++=.+..+.+.... +-..|+|.|-
T Consensus 157 ~~~i~~L~~~--~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~ 199 (213)
T cd02069 157 VEVAEEMNRR--GIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYV 199 (213)
T ss_pred HHHHHHHHhc--CCCCeEEEEChhcCHHHHhhhhccccCCCceEe
Confidence 5578888876 34666664443333333322 2356888773
No 94
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=95.12 E-value=0.18 Score=47.98 Aligned_cols=79 Identities=15% Similarity=0.198 Sum_probs=59.2
Q ss_pred EEEEEeCCH-HH-----HHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 95 HVLAVDDSY-VD-----RKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 95 ~ILvVdD~~-~~-----~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
+|++|+++- .+ .+.|..-|++.|+.|..+.+..+++..++ .....+++++|+.-. ..++++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~---~~~~~~ 68 (713)
T PRK15399 2 NIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIE----------HNPRICGVIFDWDEY---SLDLCS 68 (713)
T ss_pred cEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHh----------cccceeEEEEecccc---hHHHHH
Confidence 577787663 11 34566678889999999999999999885 334678999995332 355889
Q ss_pred HHHhcCCCCCCcEEEEecCC
Q 048660 169 KIKESSVFREVPVVIMSSED 188 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~ 188 (213)
.+|+. ...+||+++....
T Consensus 69 ~~~~~--~~~~Pv~~~~~~~ 86 (713)
T PRK15399 69 DINQL--NEYLPLYAFINTH 86 (713)
T ss_pred HHHHh--CCCCCEEEEcCcc
Confidence 99987 5799999998743
No 95
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=94.88 E-value=0.45 Score=36.14 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=72.7
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHhhcCCEEEE---EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC--CC
Q 048660 92 KELHVLAV----DDSYVDRKLIERLLQISSCKVTA---VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG--MT 162 (213)
Q Consensus 92 ~~~~ILvV----dD~~~~~~~l~~~L~~~g~~v~~---a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~--~~ 162 (213)
.+.|||+. |-+..-.+.+.+.|+..||+|.. ..+.+|+.+.. -+...|+|.+...-.. ..
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA-----------~~~dv~vIgvSsl~g~h~~l 79 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAA-----------VEEDVDVIGVSSLDGGHLTL 79 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHH-----------HhcCCCEEEEEeccchHHHH
Confidence 46788776 67777889999999999999875 56788888776 3446777776543222 12
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeC
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVK 207 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~K 207 (213)
.-++.+.+|+.+ ..++. +++.+.-..++..+..+.|++.++.-
T Consensus 80 ~~~lve~lre~G-~~~i~-v~~GGvip~~d~~~l~~~G~~~if~p 122 (143)
T COG2185 80 VPGLVEALREAG-VEDIL-VVVGGVIPPGDYQELKEMGVDRIFGP 122 (143)
T ss_pred HHHHHHHHHHhC-CcceE-EeecCccCchhHHHHHHhCcceeeCC
Confidence 344566666653 23333 46777778888889999999998764
No 96
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=94.55 E-value=0.25 Score=47.04 Aligned_cols=79 Identities=15% Similarity=0.239 Sum_probs=58.3
Q ss_pred EEEEEeCCH-H-----HHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 95 HVLAVDDSY-V-----DRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 95 ~ILvVdD~~-~-----~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
+||+|+++. . -.+.|..-|++.|+.|..+.+..+++..+. ......++++|+.- ....+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~---~~~~~~~ 68 (714)
T PRK15400 2 NVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIE----------NNARLCGVIFDWDK---YNLELCE 68 (714)
T ss_pred cEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh----------cccceeEEEEecch---hhHHHHH
Confidence 567776652 1 144566678889999999999999999885 23467889999532 2255889
Q ss_pred HHHhcCCCCCCcEEEEecCC
Q 048660 169 KIKESSVFREVPVVIMSSED 188 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~ 188 (213)
.+|+. ...+||+++....
T Consensus 69 ~~~~~--~~~~Pv~~~~~~~ 86 (714)
T PRK15400 69 EISKM--NENLPLYAFANTY 86 (714)
T ss_pred HHHHh--CCCCCEEEEcccc
Confidence 99986 5799999998743
No 97
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=93.90 E-value=0.64 Score=38.54 Aligned_cols=93 Identities=17% Similarity=0.239 Sum_probs=60.8
Q ss_pred cEEEEEeCCHHHHH----HHHH--HHhhcCCEEE--EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC------
Q 048660 94 LHVLAVDDSYVDRK----LIER--LLQISSCKVT--AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP------ 159 (213)
Q Consensus 94 ~~ILvVdD~~~~~~----~l~~--~L~~~g~~v~--~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp------ 159 (213)
+++=|+.|+..... .++. .|-+.|+.+. ++.|...|-.... ..+++| ||
T Consensus 94 iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~~------------~G~~~v-----mPlg~pIG 156 (248)
T cd04728 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLED------------AGCAAV-----MPLGSPIG 156 (248)
T ss_pred EEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH------------cCCCEe-----CCCCcCCC
Confidence 45666665532222 2221 2334699876 5566666655542 245555 55
Q ss_pred ---CCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 160 ---GMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 160 ---~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+..-.++++.|++. .++|||+=.+-...++..++++.|+++++.
T Consensus 157 sg~Gi~~~~~I~~I~e~---~~vpVI~egGI~tpeda~~AmelGAdgVlV 203 (248)
T cd04728 157 SGQGLLNPYNLRIIIER---ADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (248)
T ss_pred CCCCCCCHHHHHHHHHh---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 22226788888875 478999888899999999999999999874
No 98
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=93.86 E-value=0.68 Score=37.06 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=66.6
Q ss_pred cEEEEE----eCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC-C-HH
Q 048660 94 LHVLAV----DDSYVDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM-T-GY 164 (213)
Q Consensus 94 ~~ILvV----dD~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~-~-G~ 164 (213)
.+|++. |.+..=..++..+|+..||+|... ...++.++.+ ....||+|.+.+.|... . -.
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~-----------~~~~pd~v~lS~~~~~~~~~~~ 153 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKV-----------KKEKPLMLTGSALMTTTMYGQK 153 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEccccccCHHHHH
Confidence 466655 456666777888899999999854 3456777777 45689999999887652 2 34
Q ss_pred HHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 165 ELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 165 e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
++++.+|+....++++|+ +.+..-.. .-+.+.|+|.|-.
T Consensus 154 ~~i~~l~~~~~~~~v~i~-vGG~~~~~--~~~~~~gad~~~~ 192 (197)
T TIGR02370 154 DINDKLKEEGYRDSVKFM-VGGAPVTQ--DWADKIGADVYGE 192 (197)
T ss_pred HHHHHHHHcCCCCCCEEE-EEChhcCH--HHHHHhCCcEEeC
Confidence 577888876433455554 55544332 3456789998854
No 99
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=93.57 E-value=0.29 Score=38.98 Aligned_cols=79 Identities=18% Similarity=0.174 Sum_probs=53.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC-CHHHHHHHHHh
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM-TGYELLKKIKE 172 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~-~G~e~~~~ir~ 172 (213)
.+||+||+...+--.|..+|++.|+.+.+..|....+..+ +...||.|++.=.-..- +.--....|++
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~-----------~~~~pd~iviSPGPG~P~d~G~~~~~i~~ 70 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELI-----------EALKPDAIVISPGPGTPKDAGISLELIRR 70 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHH-----------hhcCCCEEEEcCCCCChHHcchHHHHHHH
Confidence 5799999999999999999999999888887763333333 34468999987432111 11123444444
Q ss_pred cCCCCCCcEEEEe
Q 048660 173 SSVFREVPVVIMS 185 (213)
Q Consensus 173 ~~~~~~~pII~lt 185 (213)
. ..++||+.+.
T Consensus 71 ~--~~~~PiLGVC 81 (191)
T COG0512 71 F--AGRIPILGVC 81 (191)
T ss_pred h--cCCCCEEEEC
Confidence 3 3578998775
No 100
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=93.51 E-value=0.96 Score=33.77 Aligned_cols=94 Identities=10% Similarity=0.070 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CC-HHHHHHHHHhcCCC
Q 048660 102 SYVDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MT-GYELLKKIKESSVF 176 (213)
Q Consensus 102 ~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~-G~e~~~~ir~~~~~ 176 (213)
+..-...+..+|+..||+|.-. ...++.++.+ .+..+|+|.+...|.. +. .-++.+.+++.. .
T Consensus 12 HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa-----------~~~~adiVglS~L~t~~~~~~~~~~~~l~~~g-l 79 (128)
T cd02072 12 HAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAA-----------IETDADAILVSSLYGHGEIDCKGLREKCDEAG-L 79 (128)
T ss_pred hHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEeccccCCHHHHHHHHHHHHHCC-C
Confidence 4455678888999999998753 5667777776 4457899999887755 33 456788888764 3
Q ss_pred CCCcEEEEecCC--C----HHHHHHHHHcCCCeeeeCC
Q 048660 177 REVPVVIMSSED--V----LTQIDSCLEEGAEEYIVKP 208 (213)
Q Consensus 177 ~~~pII~lt~~~--~----~~~~~~~~~~G~~~~L~KP 208 (213)
.+++ |++.+.. . .++..++.+.|++..+...
T Consensus 80 ~~v~-vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pg 116 (128)
T cd02072 80 KDIL-LYVGGNLVVGKQDFEDVEKRFKEMGFDRVFAPG 116 (128)
T ss_pred CCCe-EEEECCCCCChhhhHHHHHHHHHcCCCEEECcC
Confidence 3544 4455542 2 2345678899999887643
No 101
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=93.28 E-value=1 Score=33.88 Aligned_cols=94 Identities=11% Similarity=0.055 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC--HHHHHHHHHhcCCC
Q 048660 102 SYVDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT--GYELLKKIKESSVF 176 (213)
Q Consensus 102 ~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~--G~e~~~~ir~~~~~ 176 (213)
+..-...+..+|+..||+|.-. ...++.++.+ .+..+|+|-+...|...- --++.+.+++.. .
T Consensus 14 HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa-----------~~~~adiVglS~l~~~~~~~~~~~~~~l~~~g-l 81 (134)
T TIGR01501 14 HAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAA-----------IETKADAILVSSLYGHGEIDCKGLRQKCDEAG-L 81 (134)
T ss_pred hhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEecccccCHHHHHHHHHHHHHCC-C
Confidence 4555677888999999998754 5677777777 445789999988775422 445777888764 2
Q ss_pred CCCcEEEEecCC--CHH----HHHHHHHcCCCeeeeCC
Q 048660 177 REVPVVIMSSED--VLT----QIDSCLEEGAEEYIVKP 208 (213)
Q Consensus 177 ~~~pII~lt~~~--~~~----~~~~~~~~G~~~~L~KP 208 (213)
.. +.+++.+.. ..+ ...++.+.|++..+...
T Consensus 82 ~~-~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pg 118 (134)
T TIGR01501 82 EG-ILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPG 118 (134)
T ss_pred CC-CEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcC
Confidence 34 446666631 122 24568899998877643
No 102
>PRK00208 thiG thiazole synthase; Reviewed
Probab=93.11 E-value=1.4 Score=36.64 Aligned_cols=93 Identities=17% Similarity=0.248 Sum_probs=61.1
Q ss_pred cEEEEEeCCHH----HHHHHHH--HHhhcCCEEE--EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC------
Q 048660 94 LHVLAVDDSYV----DRKLIER--LLQISSCKVT--AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP------ 159 (213)
Q Consensus 94 ~~ILvVdD~~~----~~~~l~~--~L~~~g~~v~--~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp------ 159 (213)
+++=|+.|+.. ..+.++. .|-+.|+.+. ++.|...|-.... ..+++| ||
T Consensus 94 iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~~------------~G~~~v-----mPlg~pIG 156 (250)
T PRK00208 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEE------------AGCAAV-----MPLGAPIG 156 (250)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH------------cCCCEe-----CCCCcCCC
Confidence 46666665532 2222222 2334699876 5566666655542 245555 55
Q ss_pred ---CCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 160 ---GMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 160 ---~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+..-.++++.|++. .++|||+=.+-...++..++++.|+++++.
T Consensus 157 sg~gi~~~~~i~~i~e~---~~vpVIveaGI~tpeda~~AmelGAdgVlV 203 (250)
T PRK00208 157 SGLGLLNPYNLRIIIEQ---ADVPVIVDAGIGTPSDAAQAMELGADAVLL 203 (250)
T ss_pred CCCCCCCHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 22226778888875 478999999999999999999999999874
No 103
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=93.05 E-value=0.44 Score=35.09 Aligned_cols=103 Identities=11% Similarity=0.142 Sum_probs=68.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHH--HH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELL--KK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~--~~ 169 (213)
.+.|.+.||-|..-.......|..-+..|+.-... ..+ -...||.+|+.+-.+-.+...+- +.
T Consensus 10 ~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~----~~l-----------p~~hYD~~Ll~vavtfr~n~tm~~~~l 74 (140)
T COG4999 10 AGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTF----SAL-----------PPAHYDMMLLGVAVTFRENLTMQHERL 74 (140)
T ss_pred ccceeEEecCccHHHHHHHHHHhcCCceEEecccc----ccc-----------ChhhhceeeecccccccCCchHHHHHH
Confidence 46789999999999999999999999888754432 222 23479999999877654433221 11
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCC
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKL 211 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~ 211 (213)
.+... ..+--|+++-... ....++..+.|+.++|.||++.
T Consensus 75 ~~Al~-mtd~vilalPs~~-qv~AeqLkQ~g~~~CllKPls~ 114 (140)
T COG4999 75 AKALS-MTDFVILALPSHA-QVNAEQLKQDGAGACLLKPLSS 114 (140)
T ss_pred HHHHh-hhcceEEecCcHH-HHhHHHHhhcchHhHhhCcchh
Confidence 22211 2233344444333 3467788999999999999975
No 104
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=92.55 E-value=0.25 Score=42.36 Aligned_cols=75 Identities=19% Similarity=0.150 Sum_probs=46.4
Q ss_pred CCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEec-CCCHHHHHH
Q 048660 117 SCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSS-EDVLTQIDS 195 (213)
Q Consensus 117 g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~-~~~~~~~~~ 195 (213)
|..+..+.+..++-..+. .-.+||+|..+- . ..+.... .+...++++++ ..+.+....
T Consensus 1 ~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~-----~--~~~~~~~-p~~~~vv~v~~~~~~~~~~~~ 59 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA-------------RAPLVLVDADMA-----E--ACAAAGL-PRRRRVVLVGGGEPGGALWRA 59 (322)
T ss_pred CCceEEccCchhhhhccc-------------cCCeEEECchhh-----h--HHHhccC-CCCCCEEEEeCCCCCHHHHHH
Confidence 456677777666655442 346899986431 1 1122211 12223554444 556888999
Q ss_pred HHHcCCCeeeeCCCCCC
Q 048660 196 CLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 196 ~~~~G~~~~L~KP~~~~ 212 (213)
++++|+.+||.+|++.+
T Consensus 60 a~~~Ga~~~l~~P~~~~ 76 (322)
T TIGR03815 60 AAAVGAEHVAVLPEAEG 76 (322)
T ss_pred HHHhChhheeeCCCCHH
Confidence 99999999999998753
No 105
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=92.28 E-value=2.9 Score=33.71 Aligned_cols=86 Identities=12% Similarity=0.149 Sum_probs=58.4
Q ss_pred HHHhhhhhhcccCCCcchhhhhhhhcCCccEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EEcCHHHHHHHhhhcCCCCC
Q 048660 65 RLVKEKKFKETNRGFPFWAMATVAECSKELHVLAVDDSYVDRKLIERLLQISSC--KVT-AVESGTRALQYLGLDGEQSN 141 (213)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~l~~~~~~~~ 141 (213)
+..+.+..-+.+.+....+..........-+|.-+|-++...+..+..+++.|+ ++. ...++.+.+..+....
T Consensus 42 ~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~---- 117 (205)
T PF01596_consen 42 RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDG---- 117 (205)
T ss_dssp HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT----
T ss_pred HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc----
Confidence 344556666666665544444443344567999999999999999999998886 444 4577888887764321
Q ss_pred CCCCCCceeEEEEeCC
Q 048660 142 VGFDALKVNLIITDYT 157 (213)
Q Consensus 142 ~~~~~~~~dlil~D~~ 157 (213)
....||+||+|..
T Consensus 118 ---~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 118 ---EEGQFDFVFIDAD 130 (205)
T ss_dssp ---TTTSEEEEEEEST
T ss_pred ---CCCceeEEEEccc
Confidence 1347999999984
No 106
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=91.78 E-value=2.1 Score=41.00 Aligned_cols=104 Identities=13% Similarity=0.089 Sum_probs=70.0
Q ss_pred CCccEEEEE----eCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC--
Q 048660 91 SKELHVLAV----DDSYVDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM-- 161 (213)
Q Consensus 91 ~~~~~ILvV----dD~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~-- 161 (213)
.+..+|++. |.+..-...+..+|+..||.|..- .+.+++.+.. ....+|+|.+-..+...
T Consensus 580 g~rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa-----------~~~~a~ivvlcs~d~~~~e 648 (714)
T PRK09426 580 GRRPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQA-----------VENDVHVVGVSSLAAGHKT 648 (714)
T ss_pred CCCceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHH-----------HHcCCCEEEEeccchhhHH
Confidence 456677766 455666677888899999999643 3567777777 33467888876655442
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeC
Q 048660 162 TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVK 207 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~K 207 (213)
..-.+++.|++.+ ..+++ |++.+...+++...+.++|+|+|+..
T Consensus 649 ~~~~l~~~Lk~~G-~~~v~-vl~GG~~~~~~~~~l~~aGvD~~i~~ 692 (714)
T PRK09426 649 LVPALIEALKKLG-REDIM-VVVGGVIPPQDYDFLYEAGVAAIFGP 692 (714)
T ss_pred HHHHHHHHHHhcC-CCCcE-EEEeCCCChhhHHHHHhCCCCEEECC
Confidence 3556888888763 22333 44665534555677889999999864
No 107
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=90.98 E-value=4.3 Score=31.98 Aligned_cols=80 Identities=11% Similarity=0.154 Sum_probs=58.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcC--CEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISS--CKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g--~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
.--++.++.+++..++.++.++..|| |.|....+-+++++.++. ....+.|+..+....+ ....
T Consensus 30 Ga~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~---------~G~vvhLtmyga~~~~-----~~~~ 95 (176)
T PRK03958 30 GADKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKD---------GGIVVHLTMYGENIQD-----VEPE 95 (176)
T ss_pred CCceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHh---------CCcEEEEEEecCCccc-----hHHH
Confidence 34579999999999999999999997 679999999999998852 2246788888887765 4444
Q ss_pred HHhcCCCCCCcEEEEec
Q 048660 170 IKESSVFREVPVVIMSS 186 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~ 186 (213)
||+.... .-|++++-+
T Consensus 96 ir~~~~~-~~p~LIvvG 111 (176)
T PRK03958 96 IREAHRK-GEPLLIVVG 111 (176)
T ss_pred HHHhhcc-CCcEEEEEc
Confidence 5542111 335555544
No 108
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.30 E-value=5.6 Score=33.71 Aligned_cols=94 Identities=18% Similarity=0.149 Sum_probs=62.3
Q ss_pred EEEEeCCHHHHHHHHHHHhh---c-C-C-EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 96 VLAVDDSYVDRKLIERLLQI---S-S-C-KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~---~-g-~-~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
|||-|++-... .+...++. . + . ..+.+++.++|.+.+. ...|+|++|=..|. +--++.+.
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~------------agaDiI~LDn~~~e-~l~~~v~~ 222 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAK------------AGADIIMLDNMTPE-EIREVIEA 222 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHH------------cCcCEEEECCCCHH-HHHHHHHH
Confidence 78888886554 45554432 1 2 2 4457899999999883 25799999954333 34445555
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
+++... ..-..+..|+.-+.+...+..+.|+|.+
T Consensus 223 l~~~~~-~~~~~leaSGGI~~~ni~~yA~tGvD~I 256 (278)
T PRK08385 223 LKREGL-RERVKIEVSGGITPENIEEYAKLDVDVI 256 (278)
T ss_pred HHhcCc-CCCEEEEEECCCCHHHHHHHHHcCCCEE
Confidence 555321 2234677888889999999999999765
No 109
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=89.97 E-value=2.2 Score=34.91 Aligned_cols=84 Identities=11% Similarity=0.086 Sum_probs=54.8
Q ss_pred hhhhhhcccCCCcchhhhhhhhcCCccEEEEEeCCHHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHhhhcCCCCCCCCC
Q 048660 68 KEKKFKETNRGFPFWAMATVAECSKELHVLAVDDSYVDRKLIERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFD 145 (213)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~~a~~g~eal~~l~~~~~~~~~~~~ 145 (213)
..+..-+.+.+...............-++.-+|-|+...+..++.+++.|. ++..... .+|++.+... .
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~-gdal~~l~~~--------~ 129 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG-GDALDVLSRL--------L 129 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec-CcHHHHHHhc--------c
Confidence 445555556554444444444444355899999999999999999999986 3444442 3445544320 3
Q ss_pred CCceeEEEEeCCCCC
Q 048660 146 ALKVNLIITDYTMPG 160 (213)
Q Consensus 146 ~~~~dlil~D~~mp~ 160 (213)
...||+||+|..=+.
T Consensus 130 ~~~fDliFIDadK~~ 144 (219)
T COG4122 130 DGSFDLVFIDADKAD 144 (219)
T ss_pred CCCccEEEEeCChhh
Confidence 468999999985443
No 110
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.56 E-value=5.8 Score=28.12 Aligned_cols=93 Identities=11% Similarity=0.095 Sum_probs=59.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCH-HHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESG-TRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g-~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
.+|.++|.++...+ .+...|+.+...+-. .+.++.+ .-...+.+++...-. .....++..+|+
T Consensus 22 ~~vvvid~d~~~~~----~~~~~~~~~i~gd~~~~~~l~~a-----------~i~~a~~vv~~~~~d-~~n~~~~~~~r~ 85 (116)
T PF02254_consen 22 IDVVVIDRDPERVE----ELREEGVEVIYGDATDPEVLERA-----------GIEKADAVVILTDDD-EENLLIALLARE 85 (116)
T ss_dssp SEEEEEESSHHHHH----HHHHTTSEEEES-TTSHHHHHHT-----------TGGCESEEEEESSSH-HHHHHHHHHHHH
T ss_pred CEEEEEECCcHHHH----HHHhcccccccccchhhhHHhhc-----------CccccCEEEEccCCH-HHHHHHHHHHHH
Confidence 58999999987643 334456776654332 4455555 334677888876522 345677888887
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
. .+..+|++.... ......+.+.|++..+.
T Consensus 86 ~--~~~~~ii~~~~~--~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 86 L--NPDIRIIARVND--PENAELLRQAGADHVIS 115 (116)
T ss_dssp H--TTTSEEEEEESS--HHHHHHHHHTT-SEEEE
T ss_pred H--CCCCeEEEEECC--HHHHHHHHHCCcCEEEC
Confidence 6 466777766654 55667778899987664
No 111
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=89.23 E-value=2.8 Score=30.16 Aligned_cols=72 Identities=10% Similarity=0.148 Sum_probs=50.1
Q ss_pred eCCHHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC-CHHHHHHHHHhcCC
Q 048660 100 DDSYVDRKLIERLLQISSCKVTAVE---SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM-TGYELLKKIKESSV 175 (213)
Q Consensus 100 dD~~~~~~~l~~~L~~~g~~v~~a~---~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~-~G~e~~~~ir~~~~ 175 (213)
|.+......+..+|++.|+.+.... ...+.++.+ ....||+|.+.+.+... ..+..+..+++.
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i-----------~~~~pdiV~iS~~~~~~~~~~~~~~~~~~~-- 76 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAA-----------KEEDADVVGLSALSTTHMEAMKLVIEALKE-- 76 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHH-----------HHcCCCEEEEecchHhHHHHHHHHHHHHHh--
Confidence 5566777888999999999988653 445555555 34579999999877653 356667777765
Q ss_pred CC-CCcEEEE
Q 048660 176 FR-EVPVVIM 184 (213)
Q Consensus 176 ~~-~~pII~l 184 (213)
.+ ++++++=
T Consensus 77 ~p~~~~ivvG 86 (125)
T cd02065 77 LGIDIPVVVG 86 (125)
T ss_pred cCCCCeEEEe
Confidence 34 6666543
No 112
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=88.93 E-value=3.3 Score=34.56 Aligned_cols=90 Identities=11% Similarity=0.100 Sum_probs=60.0
Q ss_pred HHHHHHHhhcCCE--EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEE
Q 048660 107 KLIERLLQISSCK--VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIM 184 (213)
Q Consensus 107 ~~l~~~L~~~g~~--v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~l 184 (213)
..++..|..-... .+.....-.+.+.+. ...||.|++|+.....|--++...++......-.|+|=+
T Consensus 8 n~lk~~l~~g~~~~g~~~~~~sp~~~e~~a-----------~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRv 76 (256)
T PRK10558 8 NKFKAALAAKQVQIGCWSALANPITTEVLG-----------LAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRV 76 (256)
T ss_pred HHHHHHHHcCCceEEEEEcCCCcHHHHHHH-----------hcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEEC
Confidence 3466666643332 223333345666663 335999999999999988888888886543334444444
Q ss_pred ecCCCHHHHHHHHHcCCCeeeeCC
Q 048660 185 SSEDVLTQIDSCLEEGAEEYIVKP 208 (213)
Q Consensus 185 t~~~~~~~~~~~~~~G~~~~L~KP 208 (213)
...+.....+++++|+++++.--
T Consensus 77 -p~~~~~~i~r~LD~Ga~giivP~ 99 (256)
T PRK10558 77 -PTNEPVIIKRLLDIGFYNFLIPF 99 (256)
T ss_pred -CCCCHHHHHHHhCCCCCeeeecC
Confidence 45567889999999999987643
No 113
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=88.59 E-value=1.4 Score=34.90 Aligned_cols=77 Identities=19% Similarity=0.205 Sum_probs=47.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEE-eCC-CCCCCHHHHHHHHHhc
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIIT-DYT-MPGMTGYELLKKIKES 173 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~-D~~-mp~~~G~e~~~~ir~~ 173 (213)
||+||....+-..+.++|++.|+.+....+....++.+ ....||.|++ .=- -|.-++.+ .+.+++.
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~-----------~~~~~d~iilsgGpg~p~~~~~~-~~~i~~~ 69 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEI-----------EALLPLLIVISPGPCTPNEAGIS-LEAIRHF 69 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHH-----------HhcCCCEEEEcCCCCChhhcchh-HHHHHHh
Confidence 89999999999999999999999888776433223333 1225775555 221 11112222 3444443
Q ss_pred CCCCCCcEEEEec
Q 048660 174 SVFREVPVVIMSS 186 (213)
Q Consensus 174 ~~~~~~pII~lt~ 186 (213)
...+||+.+.-
T Consensus 70 --~~~~PvLGIC~ 80 (188)
T TIGR00566 70 --AGKLPILGVCL 80 (188)
T ss_pred --ccCCCEEEECH
Confidence 24688887763
No 114
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=88.38 E-value=7.7 Score=31.28 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=54.4
Q ss_pred HHHHHhh-cCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC-------CCCCCHHHHHHHHHhcCCCCCC
Q 048660 109 IERLLQI-SSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT-------MPGMTGYELLKKIKESSVFREV 179 (213)
Q Consensus 109 l~~~L~~-~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~-------mp~~~G~e~~~~ir~~~~~~~~ 179 (213)
+....++ .+..+. .+.+.+++..... ..+|++.+... .....++++++++++. -++
T Consensus 110 ~i~~~~~~~~i~vi~~v~t~ee~~~a~~------------~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~---~~i 174 (221)
T PRK01130 110 LVKRIKEYPGQLLMADCSTLEEGLAAQK------------LGFDFIGTTLSGYTEETKKPEEPDFALLKELLKA---VGC 174 (221)
T ss_pred HHHHHHhCCCCeEEEeCCCHHHHHHHHH------------cCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHh---CCC
Confidence 3334444 565443 4567777755432 24676654311 1223457889999875 268
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 180 PVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 180 pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
|+++..+-.+.++..++++.|+++++.
T Consensus 175 Pvia~GGI~t~~~~~~~l~~GadgV~i 201 (221)
T PRK01130 175 PVIAEGRINTPEQAKKALELGAHAVVV 201 (221)
T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 999888888899999999999998754
No 115
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=88.05 E-value=7.1 Score=27.24 Aligned_cols=88 Identities=19% Similarity=0.199 Sum_probs=53.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEE------cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAV------ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a------~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
+||||...+.....++..+++.|+..... ......++.. -...|+||+=...=.-+....++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~------------i~~aD~VIv~t~~vsH~~~~~vk 68 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSK------------IKKADLVIVFTDYVSHNAMWKVK 68 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHh------------cCCCCEEEEEeCCcChHHHHHHH
Confidence 48999998888999999999999998888 2222123321 12568887655444434444444
Q ss_pred HHHhcCCCCCCcEEEEecCCCHHHHHHHHH
Q 048660 169 KIKESSVFREVPVVIMSSEDVLTQIDSCLE 198 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~~~~~~~~~~~ 198 (213)
..-+ ..++|++..-..+ .....+++.
T Consensus 69 ~~ak---k~~ip~~~~~~~~-~~~l~~~l~ 94 (97)
T PF10087_consen 69 KAAK---KYGIPIIYSRSRG-VSSLERALE 94 (97)
T ss_pred HHHH---HcCCcEEEECCCC-HHHHHHHHH
Confidence 4333 3578888665333 444554443
No 116
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=87.81 E-value=4.5 Score=34.05 Aligned_cols=91 Identities=13% Similarity=0.156 Sum_probs=59.9
Q ss_pred HHHHHHhhcCCE--EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEe
Q 048660 108 LIERLLQISSCK--VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMS 185 (213)
Q Consensus 108 ~l~~~L~~~g~~--v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt 185 (213)
.++..|+.-... .+.....-.+.+.+. ...||.|++|+.....|--++...++......-.|++ =.
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a-----------~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lV-Rv 75 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAA-----------TSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVI-RP 75 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHH-----------HcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEE-EC
Confidence 455666543222 223333345666653 2359999999999988888888788765433444544 44
Q ss_pred cCCCHHHHHHHHHcCCCeeeeCCCC
Q 048660 186 SEDVLTQIDSCLEEGAEEYIVKPVK 210 (213)
Q Consensus 186 ~~~~~~~~~~~~~~G~~~~L~KP~~ 210 (213)
...+.....+++++|+++.+.--++
T Consensus 76 p~~~~~~i~r~LD~GA~GIivP~V~ 100 (267)
T PRK10128 76 VEGSKPLIKQVLDIGAQTLLIPMVD 100 (267)
T ss_pred CCCCHHHHHHHhCCCCCeeEecCcC
Confidence 5556788899999999999875443
No 117
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=87.33 E-value=6.9 Score=31.03 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=51.4
Q ss_pred cCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC--------CHHHHHHHHHhcCCCCCCcEEEEec
Q 048660 116 SSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM--------TGYELLKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 116 ~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~--------~G~e~~~~ir~~~~~~~~pII~lt~ 186 (213)
.+..+. .+.+..++.+... ...|.|.+.-..|.. .|++.++.+++. .+++||++..+
T Consensus 103 ~~~~~g~~~~t~~e~~~a~~------------~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~v~a~GG 168 (212)
T PRK00043 103 PDAIIGLSTHTLEEAAAALA------------AGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAA--VGDIPIVAIGG 168 (212)
T ss_pred CCCEEEEeCCCHHHHHHHhH------------cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh--cCCCCEEEECC
Confidence 444444 3345566666542 257888876544432 358899999875 34589887776
Q ss_pred CCCHHHHHHHHHcCCCeeee
Q 048660 187 EDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 187 ~~~~~~~~~~~~~G~~~~L~ 206 (213)
- +.+....++++|++++..
T Consensus 169 I-~~~~i~~~~~~Ga~gv~~ 187 (212)
T PRK00043 169 I-TPENAPEVLEAGADGVAV 187 (212)
T ss_pred c-CHHHHHHHHHcCCCEEEE
Confidence 6 578888999999998853
No 118
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=87.00 E-value=3 Score=31.57 Aligned_cols=53 Identities=17% Similarity=0.193 Sum_probs=43.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEc----CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVE----SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG 160 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~----~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~ 160 (213)
.+.+|+|+..+..+.+-+..+|.+.|+.|..+. +.+++++. -|+|+.-..-+.
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~----------------ADIVvsAtg~~~ 83 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHD----------------ADVVVVGSPKPE 83 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhh----------------CCEEEEecCCCC
Confidence 467999999999999999999999999999987 55555443 478888876664
No 119
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=86.93 E-value=10 Score=31.28 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhcCCEEEEEcCH---HHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC------CHHHHHHHHHhcCC
Q 048660 105 DRKLIERLLQISSCKVTAVESG---TRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM------TGYELLKKIKESSV 175 (213)
Q Consensus 105 ~~~~l~~~L~~~g~~v~~a~~g---~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~------~G~e~~~~ir~~~~ 175 (213)
....+...+++.|..+..+-+. .+.++.+. .....+++| -.+|+. +..+.++++|+.
T Consensus 117 ~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~-----------~~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~-- 182 (244)
T PRK13125 117 DLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLS-----------KLSPLFIYY-GLRPATGVPLPVSVERNIKRVRNL-- 182 (244)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHH-----------HhCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHh--
Confidence 3445667778889877655443 33444432 123456767 445552 234577777765
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 176 FREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 176 ~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+..||++=.+-.+.++...+.++|+|+++.
T Consensus 183 ~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvv 213 (244)
T PRK13125 183 VGNKYLVVGFGLDSPEDARDALSAGADGVVV 213 (244)
T ss_pred cCCCCEEEeCCcCCHHHHHHHHHcCCCEEEE
Confidence 3346655434444788888889999999875
No 120
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=86.21 E-value=6.4 Score=31.42 Aligned_cols=94 Identities=19% Similarity=0.268 Sum_probs=60.8
Q ss_pred HHHHHHhhcCCEEEE--EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-----CCHHHHHHHHHhcCCCCCCc
Q 048660 108 LIERLLQISSCKVTA--VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-----MTGYELLKKIKESSVFREVP 180 (213)
Q Consensus 108 ~l~~~L~~~g~~v~~--a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-----~~G~e~~~~ir~~~~~~~~p 180 (213)
.....|++.|+.+.. +..+..-+..+ ....||.|=+|..+-. .....+++.+........+.
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l-----------~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 205 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYL-----------KRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQ 205 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHH-----------HhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCe
Confidence 344556788987765 34555666666 3447899999965421 12334555555432223444
Q ss_pred EEEEecCCCHHHHHHHHHcCCC---e-eeeCCCCCCC
Q 048660 181 VVIMSSEDVLTQIDSCLEEGAE---E-YIVKPVKLSD 213 (213)
Q Consensus 181 II~lt~~~~~~~~~~~~~~G~~---~-~L~KP~~~~e 213 (213)
++.++-.+.+....+.+.|++ | |+.||...+|
T Consensus 206 -via~gVe~~~~~~~l~~~Gi~~~QG~~~~~p~~~~~ 241 (241)
T smart00052 206 -VVAEGVETPEQLDLLRSLGCDYGQGYLFSRPLPLDD 241 (241)
T ss_pred -EEEecCCCHHHHHHHHHcCCCEEeeceeccCCCCCC
Confidence 457788889999999999985 3 5788887764
No 121
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=85.80 E-value=17 Score=29.29 Aligned_cols=87 Identities=24% Similarity=0.361 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhhcC-CEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC-C------CCCCCHHHHHHHHHhcC
Q 048660 104 VDRKLIERLLQISS-CKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY-T------MPGMTGYELLKKIKESS 174 (213)
Q Consensus 104 ~~~~~l~~~L~~~g-~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~-~------mp~~~G~e~~~~ir~~~ 174 (213)
...+.++.. ++.| ..+ ..+.+.+++..... ..+|.+.... . .....++++++.+++.
T Consensus 110 ~~~~~i~~~-~~~g~~~iiv~v~t~~ea~~a~~------------~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~- 175 (219)
T cd04729 110 TLAELIKRI-HEEYNCLLMADISTLEEALNAAK------------LGFDIIGTTLSGYTEETAKTEDPDFELLKELRKA- 175 (219)
T ss_pred CHHHHHHHH-HHHhCCeEEEECCCHHHHHHHHH------------cCCCEEEccCccccccccCCCCCCHHHHHHHHHh-
Confidence 334444333 3344 433 34567777766542 2366664321 0 1223457889999875
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 175 VFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 175 ~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
. ++|+++..+-.+.++..++++.|+++++.
T Consensus 176 -~-~ipvia~GGI~~~~~~~~~l~~GadgV~v 205 (219)
T cd04729 176 -L-GIPVIAEGRINSPEQAAKALELGADAVVV 205 (219)
T ss_pred -c-CCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 2 68999888888899999999999998764
No 122
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.73 E-value=9.4 Score=32.42 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=59.7
Q ss_pred EEEEEeCCHHHH--------HHHHHHHhhcCC---EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH
Q 048660 95 HVLAVDDSYVDR--------KLIERLLQISSC---KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG 163 (213)
Q Consensus 95 ~ILvVdD~~~~~--------~~l~~~L~~~g~---~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G 163 (213)
.|||-|++-... ..++.+-+..++ ..+.+++.+++.+.+. ..+|+|++| +|+--+-
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~------------~gaDiImLD-n~s~e~l 227 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLA------------AGVDTIMLD-NFSLDDL 227 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHh------------cCCCEEEEC-CCCHHHH
Confidence 477777775532 333333334453 3467899999999873 257999999 3333233
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
-+++..++. ..++-.|+.-+.+........|+|-.
T Consensus 228 ~~av~~~~~------~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 228 REGVELVDG------RAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred HHHHHHhCC------CeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 344444432 23788899999999999999999654
No 123
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=85.70 E-value=4.5 Score=32.31 Aligned_cols=93 Identities=16% Similarity=0.237 Sum_probs=60.8
Q ss_pred HHHHHhhcCCEEEEE--cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-----CCHHHHHHHHHhcCCCCCCcE
Q 048660 109 IERLLQISSCKVTAV--ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-----MTGYELLKKIKESSVFREVPV 181 (213)
Q Consensus 109 l~~~L~~~g~~v~~a--~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-----~~G~e~~~~ir~~~~~~~~pI 181 (213)
....|++.|+.+..- ..+...++.+ ....||.|=+|..+-. .....+++.+........++
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l-----------~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~- 204 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYL-----------KRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLK- 204 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHH-----------HhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCe-
Confidence 444567789987764 4566666666 3446899999965421 23345555555432223444
Q ss_pred EEEecCCCHHHHHHHHHcCCC---e-eeeCCCCCCC
Q 048660 182 VIMSSEDVLTQIDSCLEEGAE---E-YIVKPVKLSD 213 (213)
Q Consensus 182 I~lt~~~~~~~~~~~~~~G~~---~-~L~KP~~~~e 213 (213)
++.++-.+.+....+.+.|++ | |+.||...++
T Consensus 205 via~gVe~~~~~~~~~~~gi~~~QG~~~~~p~~~~~ 240 (240)
T cd01948 205 VVAEGVETEEQLELLRELGCDYVQGYLFSRPLPAEE 240 (240)
T ss_pred EEEEecCCHHHHHHHHHcCCCeeeeceeccCCCCCC
Confidence 557888889999999999984 3 5778887764
No 124
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=85.52 E-value=8 Score=32.16 Aligned_cols=62 Identities=13% Similarity=0.087 Sum_probs=47.0
Q ss_pred CceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCC
Q 048660 147 LKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209 (213)
Q Consensus 147 ~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~ 209 (213)
..||.|++|+....+|--++...++......-.|+|=+ ...+.....+++++|+++++.-=+
T Consensus 32 ~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRv-p~~~~~~i~r~LD~Ga~gIivP~v 93 (249)
T TIGR03239 32 AGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRP-PWNEPVIIKRLLDIGFYNFLIPFV 93 (249)
T ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEEC-CCCCHHHHHHHhcCCCCEEEecCc
Confidence 35999999999999988888888886543333455544 555678899999999999876433
No 125
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=85.38 E-value=4.3 Score=31.72 Aligned_cols=94 Identities=19% Similarity=0.125 Sum_probs=59.2
Q ss_pred EEEEEeCCHHHHHHHHHHH----hhcCC---EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHH
Q 048660 95 HVLAVDDSYVDRKLIERLL----QISSC---KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELL 167 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L----~~~g~---~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~ 167 (213)
.|||-|++-...-.+...+ +..+. ..+.+++.+++.+.++ ..+|.|.+|-.-| -+--+++
T Consensus 52 ~ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~------------~g~d~I~lD~~~~-~~~~~~v 118 (169)
T PF01729_consen 52 MILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALE------------AGADIIMLDNMSP-EDLKEAV 118 (169)
T ss_dssp SEEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH------------TT-SEEEEES-CH-HHHHHHH
T ss_pred cEEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH------------hCCCEEEecCcCH-HHHHHHH
Confidence 4666666544333333333 22232 3457889999999884 2489999996544 2444456
Q ss_pred HHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 168 KKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 168 ~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
+.++.. .++ ..|..++.-+.+...+..+.|+|.+
T Consensus 119 ~~l~~~--~~~-v~ie~SGGI~~~ni~~ya~~gvD~i 152 (169)
T PF01729_consen 119 EELREL--NPR-VKIEASGGITLENIAEYAKTGVDVI 152 (169)
T ss_dssp HHHHHH--TTT-SEEEEESSSSTTTHHHHHHTT-SEE
T ss_pred HHHhhc--CCc-EEEEEECCCCHHHHHHHHhcCCCEE
Confidence 666555 233 6778899988999999999998765
No 126
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=84.79 E-value=12 Score=35.09 Aligned_cols=94 Identities=12% Similarity=0.197 Sum_probs=56.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcC-HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVES-GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~-g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
+..++++|.|+...+.+ ++.|+.+...+- -.+.++.. .-.+.|+++.-..-+ .+-..++..+|
T Consensus 423 g~~vvvID~d~~~v~~~----~~~g~~v~~GDat~~~~L~~a-----------gi~~A~~vv~~~~d~-~~n~~i~~~~r 486 (601)
T PRK03659 423 KMRITVLERDISAVNLM----RKYGYKVYYGDATQLELLRAA-----------GAEKAEAIVITCNEP-EDTMKIVELCQ 486 (601)
T ss_pred CCCEEEEECCHHHHHHH----HhCCCeEEEeeCCCHHHHHhc-----------CCccCCEEEEEeCCH-HHHHHHHHHHH
Confidence 45677777776544333 335666555432 22344433 223456676655433 23456777888
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+. .++.+|++-+.+ .+......++|++..+.
T Consensus 487 ~~--~p~~~IiaRa~~--~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 487 QH--FPHLHILARARG--RVEAHELLQAGVTQFSR 517 (601)
T ss_pred HH--CCCCeEEEEeCC--HHHHHHHHhCCCCEEEc
Confidence 76 578888765543 56778888999987653
No 127
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=84.35 E-value=12 Score=29.58 Aligned_cols=69 Identities=23% Similarity=0.214 Sum_probs=46.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC---EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH---HHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSC---KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG---YELL 167 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~---~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G---~e~~ 167 (213)
.+|..||-+......+++-++..+. ..+...|...++..+.. ....||+|++|= |-..+ .+++
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~---------~~~~fDiIflDP--PY~~~~~~~~~l 134 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK---------KGEKFDIIFLDP--PYAKGLYYEELL 134 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH---------CTS-EEEEEE----STTSCHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc---------cCCCceEEEECC--CcccchHHHHHH
Confidence 5899999999999999999998874 23456777777766532 345899999994 43322 4577
Q ss_pred HHHHhc
Q 048660 168 KKIKES 173 (213)
Q Consensus 168 ~~ir~~ 173 (213)
+.|.+.
T Consensus 135 ~~l~~~ 140 (183)
T PF03602_consen 135 ELLAEN 140 (183)
T ss_dssp HHHHHT
T ss_pred HHHHHC
Confidence 777653
No 128
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=84.20 E-value=11 Score=29.59 Aligned_cols=55 Identities=24% Similarity=0.356 Sum_probs=39.7
Q ss_pred ceeEEEEeCCCCC--------CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 148 KVNLIITDYTMPG--------MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 148 ~~dlil~D~~mp~--------~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
..|.|.++-..|. ..|++.++.+.+. .+++||+++.+- +.+...++.+.|++++.
T Consensus 116 g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~--~~~~pv~a~GGI-~~~~~~~~~~~G~~gva 178 (196)
T TIGR00693 116 GADYIGFGPIFPTPTKKDPAPPAGVELLREIAAT--SIDIPIVAIGGI-TLENAAEVLAAGADGVA 178 (196)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh--cCCCCEEEECCc-CHHHHHHHHHcCCCEEE
Confidence 5788887654432 2378888888764 346898887666 47788889999998864
No 129
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=84.11 E-value=17 Score=30.85 Aligned_cols=94 Identities=16% Similarity=0.149 Sum_probs=60.6
Q ss_pred EEEEEeCCHHH-------HHHHHHHHhhcC--CEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHH
Q 048660 95 HVLAVDDSYVD-------RKLIERLLQISS--CKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYE 165 (213)
Q Consensus 95 ~ILvVdD~~~~-------~~~l~~~L~~~g--~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e 165 (213)
.|||-|++-.. ...+...=+..+ ...+.+.+.++|.+.+. ..+|+|++| +|+.-+-.+
T Consensus 158 ~ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~------------~GaDiI~lD-n~~~e~l~~ 224 (277)
T TIGR01334 158 TLLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQ------------ASPDILQLD-KFTPQQLHH 224 (277)
T ss_pred hheehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHH------------cCcCEEEEC-CCCHHHHHH
Confidence 36666665433 333333333322 24467789999999883 248999999 444444455
Q ss_pred HHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 166 LLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 166 ~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
+.+.+++. .+ -.++..|+.-+.+........|+|-+
T Consensus 225 ~v~~l~~~--~~-~~~leasGGI~~~ni~~ya~~GvD~i 260 (277)
T TIGR01334 225 LHERLKFF--DH-IPTLAAAGGINPENIADYIEAGIDLF 260 (277)
T ss_pred HHHHHhcc--CC-CEEEEEECCCCHHHHHHHHhcCCCEE
Confidence 55555532 22 34677899999999999999998764
No 130
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=83.56 E-value=1.4 Score=35.12 Aligned_cols=75 Identities=11% Similarity=0.160 Sum_probs=47.8
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHH---HHHHHHh
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYE---LLKKIKE 172 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e---~~~~ir~ 172 (213)
|||||....+-..+...|++.|+.+.+..+.+..++.+ ....||.|++-=. | ++-.+ ....++.
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~-----------~~~~~d~iIlsgG-P-~~p~~~~~~~~~i~~ 68 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDI-----------ENMKPDFLMISPG-P-CSPNEAGISMEVIRY 68 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHH-----------hhCCCCEEEECCC-C-CChHhCCCchHHHHH
Confidence 89999999999999999999999888877654333333 2235777776422 1 12111 2233333
Q ss_pred cCCCCCCcEEEEe
Q 048660 173 SSVFREVPVVIMS 185 (213)
Q Consensus 173 ~~~~~~~pII~lt 185 (213)
. ...+|++.+.
T Consensus 69 ~--~~~~PvLGIC 79 (195)
T PRK07649 69 F--AGKIPIFGVC 79 (195)
T ss_pred h--cCCCCEEEEc
Confidence 2 2467888776
No 131
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=83.41 E-value=7.8 Score=28.24 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhcCCEEEEEc--CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCcE
Q 048660 105 DRKLIERLLQISSCKVTAVE--SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM-TGYELLKKIKESSVFREVPV 181 (213)
Q Consensus 105 ~~~~l~~~L~~~g~~v~~a~--~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~-~G~e~~~~ir~~~~~~~~pI 181 (213)
-...+..+|++.|+.+.... .-++.++.+. ...+||+|.+.+.-... ...++++.+|+. .++++|
T Consensus 4 gl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~----------~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~--~p~~~i 71 (127)
T cd02068 4 GLAYLAAVLEDAGFIVAEHDVLSADDIVEDIK----------ELLKPDVVGISLMTSAIYEALELAKIAKEV--LPNVIV 71 (127)
T ss_pred hHHHHHHHHHHCCCeeeecCCCCHHHHHHHHH----------HhcCCCEEEEeeccccHHHHHHHHHHHHHH--CCCCEE
Confidence 34577888988888766543 3444555552 11579999999855553 467789999986 566666
Q ss_pred EEEecC
Q 048660 182 VIMSSE 187 (213)
Q Consensus 182 I~lt~~ 187 (213)
|+=...
T Consensus 72 v~GG~~ 77 (127)
T cd02068 72 VVGGPH 77 (127)
T ss_pred EECCcc
Confidence 644333
No 132
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=83.28 E-value=11 Score=31.50 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=53.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCC
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSV 175 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~ 175 (213)
|-+.=-++.....+..+|...-|.+....++++.++.+.. ....+|++++.... .-..+...+++.
T Consensus 3 I~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~---------~~e~iDCLvle~~~---~~~~~~~~L~e~-- 68 (283)
T PF07688_consen 3 ICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQ---------HREQIDCLVLEQSP---LLPPLFNQLYEQ-- 68 (283)
T ss_dssp EEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCC---------TTTT-SEEEEETTS---TTHHHHHHHHHC--
T ss_pred EEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHh---------chhccCEEEEecCC---CcHHHHHHHHHc--
Confidence 4455556777888999999888999999999999999964 34579999998643 446678888876
Q ss_pred CCCCcEEEEecC
Q 048660 176 FREVPVVIMSSE 187 (213)
Q Consensus 176 ~~~~pII~lt~~ 187 (213)
.--+|+|++...
T Consensus 69 g~LLPaVil~~~ 80 (283)
T PF07688_consen 69 GILLPAVILGSS 80 (283)
T ss_dssp T----EEEES--
T ss_pred CccccEEEEecC
Confidence 457899998663
No 133
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=83.15 E-value=9 Score=30.99 Aligned_cols=55 Identities=24% Similarity=0.378 Sum_probs=42.1
Q ss_pred ee-EEEEeCCCCCC-C--HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 149 VN-LIITDYTMPGM-T--GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 149 ~d-lil~D~~mp~~-~--G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+ +++.|+.--++ . -+++++.+++. .++|+++-.+-.+.++..++++.|+++++.
T Consensus 159 ~~~ii~~~~~~~g~~~g~~~~~i~~i~~~---~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 159 LEGIIYTDISRDGTLSGPNFELTKELVKA---VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 44 77788754332 2 26788888874 478999999899999999999999998764
No 134
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=82.49 E-value=12 Score=32.36 Aligned_cols=76 Identities=13% Similarity=0.168 Sum_probs=52.7
Q ss_pred hcCCEE--EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-----CCHHHHHHHHHhcCCCCCCcEEEEecC
Q 048660 115 ISSCKV--TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-----MTGYELLKKIKESSVFREVPVVIMSSE 187 (213)
Q Consensus 115 ~~g~~v--~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-----~~G~e~~~~ir~~~~~~~~pII~lt~~ 187 (213)
+.|+.+ +++.|...|-+.... .+ +.+|-+.-|- ....+.++.+.+. +.+|||+=.+-
T Consensus 195 ~~Gf~v~~yc~~d~~~a~~l~~~------------g~-~avmPl~~pIGsg~gv~~p~~i~~~~e~---~~vpVivdAGI 258 (326)
T PRK11840 195 KEGFQVMVYCSDDPIAAKRLEDA------------GA-VAVMPLGAPIGSGLGIQNPYTIRLIVEG---ATVPVLVDAGV 258 (326)
T ss_pred HCCCEEEEEeCCCHHHHHHHHhc------------CC-EEEeeccccccCCCCCCCHHHHHHHHHc---CCCcEEEeCCC
Confidence 459977 566777776665521 22 4444433232 2245667777764 57999999999
Q ss_pred CCHHHHHHHHHcCCCeeee
Q 048660 188 DVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 188 ~~~~~~~~~~~~G~~~~L~ 206 (213)
...++...+++.|+|+.|.
T Consensus 259 g~~sda~~AmelGadgVL~ 277 (326)
T PRK11840 259 GTASDAAVAMELGCDGVLM 277 (326)
T ss_pred CCHHHHHHHHHcCCCEEEE
Confidence 9999999999999999875
No 135
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=82.38 E-value=1.7 Score=34.33 Aligned_cols=77 Identities=13% Similarity=0.134 Sum_probs=47.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC-CC-CCCCHHHHHHHHHhc
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY-TM-PGMTGYELLKKIKES 173 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~-~m-p~~~G~e~~~~ir~~ 173 (213)
||+||....+-..|..+|++.|+.+..+.+..--++.+ ....||.|++.= -| |..++. ....++..
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~-----------~~~~~~~iilsgGP~~~~~~~~-~~~~i~~~ 69 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDI-----------EQLAPSHLVISPGPCTPNEAGI-SLAVIRHF 69 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHH-----------HhcCCCeEEEcCCCCChHhCCC-chHHHHHh
Confidence 89999999999999999999999998887653222333 222566666532 11 111222 22333332
Q ss_pred CCCCCCcEEEEec
Q 048660 174 SVFREVPVVIMSS 186 (213)
Q Consensus 174 ~~~~~~pII~lt~ 186 (213)
...+||+.+.-
T Consensus 70 --~~~~PiLGIC~ 80 (191)
T PRK06774 70 --ADKLPILGVCL 80 (191)
T ss_pred --cCCCCEEEECH
Confidence 24688887763
No 136
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=82.37 E-value=2.9 Score=33.04 Aligned_cols=88 Identities=17% Similarity=0.139 Sum_probs=52.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC--CCCCHHHHHHHHHhc
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM--PGMTGYELLKKIKES 173 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m--p~~~G~e~~~~ir~~ 173 (213)
||+||....+--.|..+|++.|+.+.+..+.+..++.+ ....||.|++-=.- |.-++. ..+.++..
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~-----------~~~~~d~iils~GPg~p~~~~~-~~~~~~~~ 69 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADI-----------DALKPQKIVISPGPCTPDEAGI-SLDVIRHY 69 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHH-----------HhcCCCEEEEcCCCCChHHCCc-cHHHHHHh
Confidence 89999999999999999999999888876653223333 12257766664321 111222 22333332
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGA 201 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~ 201 (213)
...+||+.+.- ....-+...|+
T Consensus 70 --~~~~PiLGICl----G~Q~la~a~Gg 91 (187)
T PRK08007 70 --AGRLPILGVCL----GHQAMAQAFGG 91 (187)
T ss_pred --cCCCCEEEECH----HHHHHHHHcCC
Confidence 34688887763 33334444454
No 137
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=82.07 E-value=19 Score=29.84 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=57.4
Q ss_pred cEEEEEeCC----HHHHHHHH--HHHhhcCCEEEEE--cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-
Q 048660 94 LHVLAVDDS----YVDRKLIE--RLLQISSCKVTAV--ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY- 164 (213)
Q Consensus 94 ~~ILvVdD~----~~~~~~l~--~~L~~~g~~v~~a--~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~- 164 (213)
+++=|+.|+ |+..+.++ +.|-+.||.|.-. .|.--|-+.. ..+ -..+|-+.-|-.+|.
T Consensus 94 IKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~-d~G------------caavMPlgsPIGSg~G 160 (247)
T PF05690_consen 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLE-DAG------------CAAVMPLGSPIGSGRG 160 (247)
T ss_dssp EEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHH-HTT-------------SEBEEBSSSTTT---
T ss_pred EEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHH-HCC------------CCEEEecccccccCcC
Confidence 456566555 33344433 4467889998744 4444444433 211 136777777766543
Q ss_pred ----HHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 165 ----ELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 165 ----e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..++.|++. .++|+|+=.+-..+.+...+++.|+|+.|.
T Consensus 161 i~n~~~l~~i~~~---~~vPvIvDAGiG~pSdaa~AMElG~daVLv 203 (247)
T PF05690_consen 161 IQNPYNLRIIIER---ADVPVIVDAGIGTPSDAAQAMELGADAVLV 203 (247)
T ss_dssp SSTHHHHHHHHHH---GSSSBEEES---SHHHHHHHHHTT-SEEEE
T ss_pred CCCHHHHHHHHHh---cCCcEEEeCCCCCHHHHHHHHHcCCceeeh
Confidence 467888875 389999999999999999999999999985
No 138
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=81.93 E-value=22 Score=32.10 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=55.0
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC--HHHH
Q 048660 92 KELHVLAVDDSYV---DRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT--GYEL 166 (213)
Q Consensus 92 ~~~~ILvVdD~~~---~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~--G~e~ 166 (213)
.+.+|++++-|.. ....++.+....|..+..+.+..++.+.+ ....+|+||+|. ++.. ..+.
T Consensus 251 ~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l-----------~~~~~D~VLIDT--aGr~~rd~~~ 317 (432)
T PRK12724 251 MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETL-----------ARDGSELILIDT--AGYSHRNLEQ 317 (432)
T ss_pred cCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHH-----------HhCCCCEEEEeC--CCCCccCHHH
Confidence 3568888887752 12234444445566666565666666666 234689999997 3321 1233
Q ss_pred HHHHHh---c-C-CCCCCcEEEEecCCCHHHHHHHHH----cCCCee
Q 048660 167 LKKIKE---S-S-VFREVPVVIMSSEDVLTQIDSCLE----EGAEEY 204 (213)
Q Consensus 167 ~~~ir~---~-~-~~~~~pII~lt~~~~~~~~~~~~~----~G~~~~ 204 (213)
++.+.+ . . ..+.-.++++++.....+.....+ .|.+++
T Consensus 318 l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~gl 364 (432)
T PRK12724 318 LERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRI 364 (432)
T ss_pred HHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEE
Confidence 333332 1 1 113346778888776655544443 455554
No 139
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=81.46 E-value=9.9 Score=31.29 Aligned_cols=56 Identities=25% Similarity=0.308 Sum_probs=44.6
Q ss_pred ceeEEEEeCCCCCC--CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 148 KVNLIITDYTMPGM--TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 148 ~~dlil~D~~mp~~--~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
..|.|-+|...++. -.++.++.+++. .+.+|||..-+-.+.++..+.++.|++++.
T Consensus 161 Gad~i~Vd~~~~g~~~a~~~~I~~i~~~--~~~ipIIgNGgI~s~eda~e~l~~GAd~Vm 218 (231)
T TIGR00736 161 GFDGIHVDAMYPGKPYADMDLLKILSEE--FNDKIIIGNNSIDDIESAKEMLKAGADFVS 218 (231)
T ss_pred CCCEEEEeeCCCCCchhhHHHHHHHHHh--cCCCcEEEECCcCCHHHHHHHHHhCCCeEE
Confidence 46777778766664 258889999885 335999999999999999999999999874
No 140
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=81.14 E-value=15 Score=28.84 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=49.7
Q ss_pred EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHc
Q 048660 120 VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEE 199 (213)
Q Consensus 120 v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~ 199 (213)
+.-+.+.+|+.+.++ ...|.|-++- .+.. |.++++.+++. .+++|+++..+- +.+....++++
T Consensus 101 i~gv~t~~e~~~A~~------------~Gad~i~~~p-~~~~-g~~~~~~l~~~--~~~~p~~a~GGI-~~~n~~~~~~~ 163 (190)
T cd00452 101 LPGVATPTEIMQALE------------LGADIVKLFP-AEAV-GPAYIKALKGP--FPQVRFMPTGGV-SLDNAAEWLAA 163 (190)
T ss_pred ECCcCCHHHHHHHHH------------CCCCEEEEcC-Cccc-CHHHHHHHHhh--CCCCeEEEeCCC-CHHHHHHHHHC
Confidence 345668888888763 2467777753 3333 89999999865 556888876666 78899999999
Q ss_pred CCCee
Q 048660 200 GAEEY 204 (213)
Q Consensus 200 G~~~~ 204 (213)
|++.+
T Consensus 164 G~~~v 168 (190)
T cd00452 164 GVVAV 168 (190)
T ss_pred CCEEE
Confidence 98775
No 141
>PRK13566 anthranilate synthase; Provisional
Probab=80.64 E-value=5.3 Score=38.45 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=51.9
Q ss_pred hcCCccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC--CCC-CCHHH
Q 048660 89 ECSKELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT--MPG-MTGYE 165 (213)
Q Consensus 89 ~~~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~--mp~-~~G~e 165 (213)
....+.+|||||....+-..+.++|++.|+.|..+..... .+.+ ....||.||+-=. .|. .+-.+
T Consensus 522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~-----------~~~~~DgVVLsgGpgsp~d~~~~~ 589 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEML-----------DRVNPDLVVLSPGPGRPSDFDCKA 589 (720)
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHh-----------hhcCCCEEEECCCCCChhhCCcHH
Confidence 3456789999999988899999999999999988766432 1222 2235788776211 111 12233
Q ss_pred HHHHHHhcCCCCCCcEEEEec
Q 048660 166 LLKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 166 ~~~~ir~~~~~~~~pII~lt~ 186 (213)
+++.+.+ .++||+.+.-
T Consensus 590 lI~~a~~----~~iPILGICl 606 (720)
T PRK13566 590 TIDAALA----RNLPIFGVCL 606 (720)
T ss_pred HHHHHHH----CCCcEEEEeh
Confidence 4444332 3688888764
No 142
>PRK00811 spermidine synthase; Provisional
Probab=80.60 E-value=23 Score=29.90 Aligned_cols=69 Identities=16% Similarity=0.125 Sum_probs=45.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcC------CEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC---
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISS------CKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT--- 162 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g------~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~--- 162 (213)
..+|.+||=++.+.+..++.+...+ -++ ....|+.+.+.. ....||+|++|..-|...
T Consensus 100 ~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~------------~~~~yDvIi~D~~dp~~~~~~ 167 (283)
T PRK00811 100 VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE------------TENSFDVIIVDSTDPVGPAEG 167 (283)
T ss_pred CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh------------CCCcccEEEECCCCCCCchhh
Confidence 3589999999999999999886432 233 345666554432 234799999998666422
Q ss_pred --HHHHHHHHHhc
Q 048660 163 --GYELLKKIKES 173 (213)
Q Consensus 163 --G~e~~~~ir~~ 173 (213)
.-++.+.+++.
T Consensus 168 l~t~ef~~~~~~~ 180 (283)
T PRK00811 168 LFTKEFYENCKRA 180 (283)
T ss_pred hhHHHHHHHHHHh
Confidence 24556666654
No 143
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=80.47 E-value=5.3 Score=34.64 Aligned_cols=55 Identities=15% Similarity=0.127 Sum_probs=41.6
Q ss_pred ceeEEEEeCCCCCCC-HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 148 KVNLIITDYTMPGMT-GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 148 ~~dlil~D~~mp~~~-G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
.+|+|.+|+..+..+ -.+++++||+. ++++|||+= .-.+.+....+.++|+|...
T Consensus 111 ~~d~i~iD~a~gh~~~~~e~I~~ir~~--~p~~~vi~g-~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 111 TPEYITIDIAHGHSDSVINMIQHIKKH--LPETFVIAG-NVGTPEAVRELENAGADATK 166 (326)
T ss_pred CCCEEEEECCCCchHHHHHHHHHHHhh--CCCCeEEEE-ecCCHHHHHHHHHcCcCEEE
Confidence 359999999997644 56689999986 667776652 23367888999999998864
No 144
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=80.45 E-value=27 Score=31.38 Aligned_cols=93 Identities=15% Similarity=0.074 Sum_probs=52.6
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC-----H
Q 048660 92 KELHVLAVDDSYVD---RKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT-----G 163 (213)
Q Consensus 92 ~~~~ILvVdD~~~~---~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~-----G 163 (213)
.+.+|.+|+-|+.- .+.+..+-+..|..+..+.+..+....+.. ...+|+||+|. |+.. .
T Consensus 250 ~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~----------~~~~DlVlIDt--~G~~~~d~~~ 317 (424)
T PRK05703 250 GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ----------LRDCDVILIDT--AGRSQRDKRL 317 (424)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH----------hCCCCEEEEeC--CCCCCCCHHH
Confidence 45789999877632 233444445567777777777666655532 22589999997 3332 2
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHH
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSC 196 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~ 196 (213)
.+.+..+-+....+.-..+++++.....+..+.
T Consensus 318 ~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 318 IEELKALIEFSGEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred HHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH
Confidence 223333322111233346778887766555443
No 145
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=80.43 E-value=23 Score=31.00 Aligned_cols=104 Identities=14% Similarity=0.286 Sum_probs=70.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC----EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC------
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC----KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT------ 162 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~----~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~------ 162 (213)
+.-..+.++-+.+.+++..+=...+. ++.+..|.++-++.++.. .....+++.+--.-+...
T Consensus 117 ~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~--------e~aG~~~ltVHGRtr~~kg~~~~p 188 (358)
T KOG2335|consen 117 GYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKML--------EDAGVSLLTVHGRTREQKGLKTGP 188 (358)
T ss_pred CccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHH--------HhCCCcEEEEecccHHhcCCCCCC
Confidence 34467777777777777777666653 445567777766665422 112334455444433333
Q ss_pred -HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHH-cCCCeeee
Q 048660 163 -GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLE-EGAEEYIV 206 (213)
Q Consensus 163 -G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~-~G~~~~L~ 206 (213)
-++.++.||++ .+++|+|+-.+-...++..++++ .|+++.+.
T Consensus 189 ad~~~i~~v~~~--~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 189 ADWEAIKAVREN--VPDIPVIANGNILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred cCHHHHHHHHHh--CcCCcEEeeCCcCcHHHHHHHHHHhCCceEEe
Confidence 37899999987 56699998888788889999998 99999865
No 146
>PLN02476 O-methyltransferase
Probab=80.42 E-value=25 Score=29.85 Aligned_cols=59 Identities=10% Similarity=0.173 Sum_probs=41.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCE--EE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCK--VT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT 157 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~--v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~ 157 (213)
..-+|.-+|-++...+..+..+++.|+. +. ...+..+.+..+..+. ....||+||+|..
T Consensus 142 ~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~-------~~~~FD~VFIDa~ 203 (278)
T PLN02476 142 ESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNG-------EGSSYDFAFVDAD 203 (278)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcc-------cCCCCCEEEECCC
Confidence 3457999999999999999999998873 43 3456566665442111 1347999999975
No 147
>PRK05670 anthranilate synthase component II; Provisional
Probab=80.23 E-value=5.2 Score=31.47 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=27.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcCH
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESG 126 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g 126 (213)
|||+|.....-..+.+.|++.|+.+......
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~ 32 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRND 32 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECC
Confidence 8999999999999999999999988777553
No 148
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=79.82 E-value=22 Score=30.49 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=58.2
Q ss_pred HHHHHhhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC-----CCCCHHHHHHHHHhcCCCCCCcEE
Q 048660 109 IERLLQISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM-----PGMTGYELLKKIKESSVFREVPVV 182 (213)
Q Consensus 109 l~~~L~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m-----p~~~G~e~~~~ir~~~~~~~~pII 182 (213)
+...++..|..+. .+.+.++|....+ ...|.|++.-.- ....-+.+++++++. -++|||
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~------------~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~---~~iPvi 165 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEK------------AGADAVIAEGMESGGHIGELTTMALVPQVVDA---VSIPVI 165 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHH------------cCCCEEEEECcccCCCCCCCcHHHHHHHHHHH---hCCCEE
Confidence 5556676787654 4677777766542 246777774321 122458888898874 368999
Q ss_pred EEecCCCHHHHHHHHHcCCCeee
Q 048660 183 IMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 183 ~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
+-.+-.+......++..|+++..
T Consensus 166 aaGGI~~~~~~~~al~~GA~gV~ 188 (307)
T TIGR03151 166 AAGGIADGRGMAAAFALGAEAVQ 188 (307)
T ss_pred EECCCCCHHHHHHHHHcCCCEee
Confidence 88888889999999999999864
No 149
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=79.77 E-value=15 Score=30.56 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=44.8
Q ss_pred CceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeC
Q 048660 147 LKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVK 207 (213)
Q Consensus 147 ~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~K 207 (213)
..||.|++|+.-...+--++...++........+++=+. ..+.....++++.|+++.+.-
T Consensus 32 ~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~-~~~~~~i~~~Ld~Ga~gIivP 91 (249)
T TIGR02311 32 AGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA-IGDPVLIKQLLDIGAQTLLVP 91 (249)
T ss_pred cCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC-CCCHHHHHHHhCCCCCEEEec
Confidence 469999999999888888888888765333344555444 445668999999999998754
No 150
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=79.75 E-value=7.6 Score=34.71 Aligned_cols=56 Identities=18% Similarity=0.209 Sum_probs=43.3
Q ss_pred CceeEEEEeCCCCC-CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 147 LKVNLIITDYTMPG-MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 147 ~~~dlil~D~~mp~-~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
...|+|.+|...+. ..-.++++.||+. +|++++| +..-.+.+....+.++|+|...
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~--~p~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTK--YPNLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhh--CCCCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 35899999998875 4566889999976 5677744 5555667889999999998764
No 151
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=79.51 E-value=11 Score=30.43 Aligned_cols=53 Identities=26% Similarity=0.420 Sum_probs=41.7
Q ss_pred EEEEeCCCCC-CCH--HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcC-CCeeee
Q 048660 151 LIITDYTMPG-MTG--YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEG-AEEYIV 206 (213)
Q Consensus 151 lil~D~~mp~-~~G--~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G-~~~~L~ 206 (213)
++++|..--+ ..| +++++++++. ..+|+|+-.+-.+.++..++++.| +++++.
T Consensus 163 ii~~~~~~~g~~~G~d~~~i~~l~~~---~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 163 IIYTDISRDGTLSGPNVEATRELAAA---VPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred EEEeeecCcCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 8888876433 234 6888888874 358999999999999999999988 998764
No 152
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=79.19 E-value=27 Score=28.99 Aligned_cols=84 Identities=18% Similarity=0.126 Sum_probs=51.0
Q ss_pred hhhhhhcccCCCcchhhhhhhhcCCccEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EEcCHHHHHHHhhhcCCCCCCCC
Q 048660 68 KEKKFKETNRGFPFWAMATVAECSKELHVLAVDDSYVDRKLIERLLQISSC--KVT-AVESGTRALQYLGLDGEQSNVGF 144 (213)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~l~~~~~~~~~~~ 144 (213)
..+..-+.+.................-+|.-+|-++......+..+++.|+ .|. ...+..+.+..+...+.
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~------ 152 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGK------ 152 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccc------
Confidence 344444445433322222222223356899999999999999999998885 343 34566666655532110
Q ss_pred CCCceeEEEEeCC
Q 048660 145 DALKVNLIITDYT 157 (213)
Q Consensus 145 ~~~~~dlil~D~~ 157 (213)
....||+||+|..
T Consensus 153 ~~~~fD~iFiDad 165 (247)
T PLN02589 153 YHGTFDFIFVDAD 165 (247)
T ss_pred cCCcccEEEecCC
Confidence 1247999999986
No 153
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=78.96 E-value=9.4 Score=35.18 Aligned_cols=56 Identities=18% Similarity=0.322 Sum_probs=40.5
Q ss_pred CceeEEEEeCCCCC-CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 147 LKVNLIITDYTMPG-MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 147 ~~~dlil~D~~mp~-~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
...|+|.+|..-.. ..-++.+++||+. +++++|| ...-...+....+.++|+|...
T Consensus 259 ag~d~i~iD~~~g~~~~~~~~i~~ik~~--~p~~~vi-~g~v~t~e~a~~a~~aGaD~i~ 315 (505)
T PLN02274 259 AGVDVVVLDSSQGDSIYQLEMIKYIKKT--YPELDVI-GGNVVTMYQAQNLIQAGVDGLR 315 (505)
T ss_pred cCCCEEEEeCCCCCcHHHHHHHHHHHHh--CCCCcEE-EecCCCHHHHHHHHHcCcCEEE
Confidence 35899999995322 2234889999986 5666665 4445567889999999999864
No 154
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=78.95 E-value=4.8 Score=33.84 Aligned_cols=49 Identities=20% Similarity=0.308 Sum_probs=37.1
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEecCCC------HHHHHHHHHcCCCeeeeCCCCCC
Q 048660 162 TGYELLKKIKESSVFREVPVVIMSSEDV------LTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~lt~~~~------~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+-+++++.+|+. ...+|+++||-.+. ....+++.++|++++|.--+..+
T Consensus 80 ~~lel~~~~r~~--~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~e 134 (265)
T COG0159 80 DTLELVEEIRAK--GVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPE 134 (265)
T ss_pred HHHHHHHHHHhc--CCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChH
Confidence 567888888875 57899999997643 34467899999999998655443
No 155
>PRK04148 hypothetical protein; Provisional
Probab=78.92 E-value=4.1 Score=30.63 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=59.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
+.+||.|.=- ....+...|.+.|++|.......++++.++. ...+.+.-|+.-|+++=++-+.
T Consensus 17 ~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~-----------~~~~~v~dDlf~p~~~~y~~a~---- 79 (134)
T PRK04148 17 NKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKK-----------LGLNAFVDDLFNPNLEIYKNAK---- 79 (134)
T ss_pred CCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHH-----------hCCeEEECcCCCCCHHHHhcCC----
Confidence 4578888766 3444667777889999999988888887742 3457899999888865322221
Q ss_pred cCCCCCCcEEEEecCCCHH----HHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLT----QIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~----~~~~~~~~G~~~~L~KP~~~~ 212 (213)
++++-+...+ ...-+.+.|+ +++.+|++-|
T Consensus 80 ---------liysirpp~el~~~~~~la~~~~~-~~~i~~l~~e 113 (134)
T PRK04148 80 ---------LIYSIRPPRDLQPFILELAKKINV-PLIIKPLSGE 113 (134)
T ss_pred ---------EEEEeCCCHHHHHHHHHHHHHcCC-CEEEEcCCCC
Confidence 2344433333 2333445566 4666777654
No 156
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=78.88 E-value=38 Score=28.73 Aligned_cols=92 Identities=21% Similarity=0.169 Sum_probs=59.6
Q ss_pred EEEEeCCHHHHHHHHHHH----hhcCCE---EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 96 VLAVDDSYVDRKLIERLL----QISSCK---VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L----~~~g~~---v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
|||=|++-...-.+...+ +..+|. -+.+++.+++.+++. ..+|+|++| +|+.-.--++.+
T Consensus 161 vliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~------------agaDiImLD-Nm~~e~~~~av~ 227 (280)
T COG0157 161 VLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALE------------AGADIIMLD-NMSPEELKEAVK 227 (280)
T ss_pred EEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH------------cCCCEEEec-CCCHHHHHHHHH
Confidence 566666544443344444 344653 356899999999884 258999999 333323333444
Q ss_pred HHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 169 KIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
.+. ...-.++-.|+.-+.+........|+|-+
T Consensus 228 ~l~----~~~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 228 LLG----LAGRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred Hhc----cCCceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 431 23456777899999999999999999644
No 157
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=78.80 E-value=23 Score=33.46 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=56.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcC-HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVES-GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~-g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
+..+.++|.|+...+.++ +.|+.+...+- -.+.++.. .-.+.+++++-+.-++ .-..++..+|
T Consensus 423 g~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~a-----------gi~~A~~vvv~~~d~~-~n~~i~~~ar 486 (621)
T PRK03562 423 GVKMTVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESA-----------GAAKAEVLINAIDDPQ-TSLQLVELVK 486 (621)
T ss_pred CCCEEEEECCHHHHHHHH----hcCCeEEEEeCCCHHHHHhc-----------CCCcCCEEEEEeCCHH-HHHHHHHHHH
Confidence 456777777776544433 35666654432 22334433 2235677777664333 3456777788
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
+. .++++|++-+.+ .+...+..++|++...
T Consensus 487 ~~--~p~~~iiaRa~d--~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 487 EH--FPHLQIIARARD--VDHYIRLRQAGVEKPE 516 (621)
T ss_pred Hh--CCCCeEEEEECC--HHHHHHHHHCCCCEEe
Confidence 76 678888765543 5667788899998653
No 158
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=78.32 E-value=38 Score=28.21 Aligned_cols=86 Identities=16% Similarity=0.078 Sum_probs=55.0
Q ss_pred HHHHHHHHhhcCCEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC---CCCCCCHHHHHHHHHhcCCCC-CCc
Q 048660 106 RKLIERLLQISSCKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY---TMPGMTGYELLKKIKESSVFR-EVP 180 (213)
Q Consensus 106 ~~~l~~~L~~~g~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~---~mp~~~G~e~~~~ir~~~~~~-~~p 180 (213)
...+....+..|..+ ..+.+.+|+..... ..+|+|-..- ..-..+ ++.+.++.+. .+ ..+
T Consensus 149 l~~li~~a~~lGl~~lvevh~~~E~~~A~~------------~gadiIgin~rdl~~~~~d-~~~~~~l~~~--~p~~~~ 213 (260)
T PRK00278 149 LKELLDYAHSLGLDVLVEVHDEEELERALK------------LGAPLIGINNRNLKTFEVD-LETTERLAPL--IPSDRL 213 (260)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHH------------cCCCEEEECCCCcccccCC-HHHHHHHHHh--CCCCCE
Confidence 333334445578765 46778888766542 1355554331 011222 6666777654 23 368
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 181 VVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 181 II~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+|+.++-.+.++..++.++|+++++.
T Consensus 214 vIaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 214 VVSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999999864
No 159
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=78.24 E-value=34 Score=27.55 Aligned_cols=96 Identities=17% Similarity=0.222 Sum_probs=57.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEE-EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-------CCHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTA-VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-------MTGYE 165 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~-a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-------~~G~e 165 (213)
...+.+.+.. ... +...+++.+..+.. +.+.+++.... +...|.++++-.-.+ ...++
T Consensus 81 ~d~v~l~~~~-~~~-~~~~~~~~~i~~i~~v~~~~~~~~~~------------~~gad~i~~~~~~~~G~~~~~~~~~~~ 146 (236)
T cd04730 81 VPVVSFSFGP-PAE-VVERLKAAGIKVIPTVTSVEEARKAE------------AAGADALVAQGAEAGGHRGTFDIGTFA 146 (236)
T ss_pred CCEEEEcCCC-CHH-HHHHHHHcCCEEEEeCCCHHHHHHHH------------HcCCCEEEEeCcCCCCCCCccccCHHH
Confidence 3445555442 222 33344445555443 34555544433 123577776542111 24577
Q ss_pred HHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 166 LLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 166 ~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+++++++. .++||++.-+-...++..+++..|++++..
T Consensus 147 ~i~~i~~~---~~~Pvi~~GGI~~~~~v~~~l~~GadgV~v 184 (236)
T cd04730 147 LVPEVRDA---VDIPVIAAGGIADGRGIAAALALGADGVQM 184 (236)
T ss_pred HHHHHHHH---hCCCEEEECCCCCHHHHHHHHHcCCcEEEE
Confidence 88888864 368999888877778899999999998754
No 160
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=78.19 E-value=35 Score=27.91 Aligned_cols=85 Identities=12% Similarity=0.079 Sum_probs=52.8
Q ss_pred HHhhhhhhcccCCCcchhhhhhhhcCCccEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EEcCHHHHHHHhhhcCCCCCC
Q 048660 66 LVKEKKFKETNRGFPFWAMATVAECSKELHVLAVDDSYVDRKLIERLLQISSC--KVT-AVESGTRALQYLGLDGEQSNV 142 (213)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~l~~~~~~~~~ 142 (213)
..+.+..-+.+.+.......-.......-+|.-+|-++......+..+++.|+ .+. ...+..+.+..+....
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~----- 140 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNND----- 140 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCC-----
Confidence 33444455555544432222222223345899999999999999999998886 233 3456666666553211
Q ss_pred CCCCCceeEEEEeCC
Q 048660 143 GFDALKVNLIITDYT 157 (213)
Q Consensus 143 ~~~~~~~dlil~D~~ 157 (213)
....||+|++|..
T Consensus 141 --~~~~fD~VfiDa~ 153 (234)
T PLN02781 141 --PKPEFDFAFVDAD 153 (234)
T ss_pred --CCCCCCEEEECCC
Confidence 1347999999975
No 161
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=78.17 E-value=23 Score=32.82 Aligned_cols=94 Identities=7% Similarity=0.101 Sum_probs=51.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcC-HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVES-GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~-g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
+..++++|.|+...+.+ ++.|+.+...+- ..+.++.. .-.+.|.++.-..-.. +-..++..+|
T Consensus 440 g~~vvvId~d~~~~~~~----~~~g~~~i~GD~~~~~~L~~a-----------~i~~a~~viv~~~~~~-~~~~iv~~~~ 503 (558)
T PRK10669 440 GIPLVVIETSRTRVDEL----RERGIRAVLGNAANEEIMQLA-----------HLDCARWLLLTIPNGY-EAGEIVASAR 503 (558)
T ss_pred CCCEEEEECCHHHHHHH----HHCCCeEEEcCCCCHHHHHhc-----------CccccCEEEEEcCChH-HHHHHHHHHH
Confidence 34567777666543333 234665554432 23344433 2235676766543222 2223555667
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+. .++.+||+-+.+ .+......+.|+|..+.
T Consensus 504 ~~--~~~~~iiar~~~--~~~~~~l~~~Gad~vv~ 534 (558)
T PRK10669 504 EK--RPDIEIIARAHY--DDEVAYITERGANQVVM 534 (558)
T ss_pred HH--CCCCeEEEEECC--HHHHHHHHHcCCCEEEC
Confidence 65 467788876643 45666677899986553
No 162
>CHL00101 trpG anthranilate synthase component 2
Probab=77.95 E-value=6 Score=31.25 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=27.8
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHH
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGT 127 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~ 127 (213)
|||||.....-..+.+.|++.|..+..+.+..
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~~ 33 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRNDE 33 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECCC
Confidence 89999998888999999999999888877543
No 163
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.88 E-value=15 Score=31.47 Aligned_cols=91 Identities=12% Similarity=0.069 Sum_probs=57.0
Q ss_pred EEEEEeCCHHHHHHHHHHHh---hc-C-C-EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 95 HVLAVDDSYVDRKLIERLLQ---IS-S-C-KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~---~~-g-~-~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
.|||-|++-...-.+...++ +. + . ..+.+++.+++.+.+. ..+|+|++| +|+.-+--++++
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~------------aGaDiImLD-nmspe~l~~av~ 244 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALA------------HGAQSVLLD-NFTLDMMREAVR 244 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHH------------cCCCEEEEC-CCCHHHHHHHHH
Confidence 46777766544333333332 11 1 2 3457889999999883 257999999 333323333333
Q ss_pred HHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 169 KIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
.++ ...++-.|+.-+.+...+....|+|-.
T Consensus 245 ~~~------~~~~lEaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 245 VTA------GRAVLEVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred hhc------CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 332 124677899999999999999999654
No 164
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=77.84 E-value=21 Score=29.87 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=56.5
Q ss_pred HHHhhcCCEEEEE--cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-----HHHHHHHHhcCCCCCCcEEE
Q 048660 111 RLLQISSCKVTAV--ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-----YELLKKIKESSVFREVPVVI 183 (213)
Q Consensus 111 ~~L~~~g~~v~~a--~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-----~e~~~~ir~~~~~~~~pII~ 183 (213)
+.|-+.||.|.-. .|..-|.+.. .. . -..+|-+.-|-.+| ...++.|++. +++|||+
T Consensus 131 e~Lv~eGF~VlPY~~~D~v~a~rLe-d~----------G--c~aVMPlgsPIGSg~Gl~n~~~l~~i~e~---~~vpViv 194 (267)
T CHL00162 131 EFLVKKGFTVLPYINADPMLAKHLE-DI----------G--CATVMPLGSPIGSGQGLQNLLNLQIIIEN---AKIPVII 194 (267)
T ss_pred HHHHHCCCEEeecCCCCHHHHHHHH-Hc----------C--CeEEeeccCcccCCCCCCCHHHHHHHHHc---CCCcEEE
Confidence 4466789998754 4444444433 11 1 14677777776543 3467778874 5799999
Q ss_pred EecCCCHHHHHHHHHcCCCeeee
Q 048660 184 MSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 184 lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
=.+-...++...+++.|+|+.|.
T Consensus 195 dAGIgt~sDa~~AmElGaDgVL~ 217 (267)
T CHL00162 195 DAGIGTPSEASQAMELGASGVLL 217 (267)
T ss_pred eCCcCCHHHHHHHHHcCCCEEee
Confidence 99999999999999999999875
No 165
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.70 E-value=23 Score=30.26 Aligned_cols=91 Identities=13% Similarity=0.047 Sum_probs=58.5
Q ss_pred EEEEEeCCHHHHHHHHHHH----hhcCC---EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHH
Q 048660 95 HVLAVDDSYVDRKLIERLL----QISSC---KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELL 167 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L----~~~g~---~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~ 167 (213)
.|||-|++-...-.+...+ +..++ ..+.+++.+++.+.+. ...|+|++|= |.--+--+++
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~------------agaDiImLDn-mspe~l~~av 235 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAA------------AGADIIMLDN-MSLEQIEQAI 235 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHH------------cCCCEEEECC-CCHHHHHHHH
Confidence 4777777754443333333 33442 3456899999999883 2579999993 3222333334
Q ss_pred HHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 168 KKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 168 ~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
+.++. -.++-.|+.-+.+........|+|-.
T Consensus 236 ~~~~~------~~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 236 TLIAG------RSRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred HHhcC------ceEEEEECCCCHHHHHHHHhcCCCEE
Confidence 33331 24677899999999999999999754
No 166
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=77.60 E-value=18 Score=30.79 Aligned_cols=70 Identities=10% Similarity=0.113 Sum_probs=50.2
Q ss_pred EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHH
Q 048660 119 KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLE 198 (213)
Q Consensus 119 ~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~ 198 (213)
..+.+.+.++|.+.+. ..+|+|++| +|+.-+--++.+.+++. .++ ..+-.|+.-+.+.......
T Consensus 192 IeVEv~tleqa~ea~~------------agaDiI~LD-n~~~e~l~~av~~~~~~--~~~-~~leaSGGI~~~ni~~yA~ 255 (284)
T PRK06096 192 IVVEADTPKEAIAALR------------AQPDVLQLD-KFSPQQATEIAQIAPSL--APH-CTLSLAGGINLNTLKNYAD 255 (284)
T ss_pred EEEECCCHHHHHHHHH------------cCCCEEEEC-CCCHHHHHHHHHHhhcc--CCC-eEEEEECCCCHHHHHHHHh
Confidence 4567789999999883 257999999 45443444455555432 223 4677899999999999999
Q ss_pred cCCCee
Q 048660 199 EGAEEY 204 (213)
Q Consensus 199 ~G~~~~ 204 (213)
.|+|-+
T Consensus 256 tGvD~I 261 (284)
T PRK06096 256 CGIRLF 261 (284)
T ss_pred cCCCEE
Confidence 999764
No 167
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=77.49 E-value=54 Score=29.61 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=55.8
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC--HHHH
Q 048660 92 KELHVLAVDDSYV---DRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT--GYEL 166 (213)
Q Consensus 92 ~~~~ILvVdD~~~---~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~--G~e~ 166 (213)
.+.+|++++-|.. ..+.++.+-...|+.+..+.+..+..+.+.... ....+|+||+|. ++.+ -.+.
T Consensus 268 ~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk-------~~~~~DvVLIDT--aGRs~kd~~l 338 (436)
T PRK11889 268 KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK-------EEARVDYILIDT--AGKNYRASET 338 (436)
T ss_pred cCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH-------hccCCCEEEEeC--ccccCcCHHH
Confidence 4567888887654 334455555566877777777666555443210 123589999997 3322 2333
Q ss_pred HHHHHhcC--CCCCCcEEEEecCCCHHH----HHHHHHcCCCeee
Q 048660 167 LKKIKESS--VFREVPVVIMSSEDVLTQ----IDSCLEEGAEEYI 205 (213)
Q Consensus 167 ~~~ir~~~--~~~~~pII~lt~~~~~~~----~~~~~~~G~~~~L 205 (213)
++++++.. ..+...++++++.....+ ...+-..|.++++
T Consensus 339 m~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI 383 (436)
T PRK11889 339 VEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIV 383 (436)
T ss_pred HHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEE
Confidence 44443311 134444666766544333 2222244666654
No 168
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=77.48 E-value=10 Score=31.35 Aligned_cols=62 Identities=18% Similarity=0.205 Sum_probs=51.5
Q ss_pred CceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCC
Q 048660 147 LKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209 (213)
Q Consensus 147 ~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~ 209 (213)
.-||-+++|...-..|.-.++.+|+.....+..|||=.... ....+.++++.|+..+|..=+
T Consensus 37 aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p~g-~~~~Ikq~LD~GAqtlliPmV 98 (255)
T COG3836 37 AGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPPVG-DPVMIKQLLDIGAQTLLIPMV 98 (255)
T ss_pred cCCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCCCC-CHHHHHHHHccccceeeeecc
Confidence 46999999999988899999999998766778888866654 467889999999999987433
No 169
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.28 E-value=12 Score=31.88 Aligned_cols=94 Identities=18% Similarity=0.163 Sum_probs=57.6
Q ss_pred EEEEEeCCHHHHHHHHHH----HhhcCC--EE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHH
Q 048660 95 HVLAVDDSYVDRKLIERL----LQISSC--KV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELL 167 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~----L~~~g~--~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~ 167 (213)
.|||-|++-...-.+... =+..++ .+ +.+.+.+||.+.+. ..+|+|.+| +|.--+--+++
T Consensus 168 ~ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~------------~GaD~I~LD-n~~~e~l~~av 234 (288)
T PRK07428 168 AVMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALE------------YGADIIMLD-NMPVDLMQQAV 234 (288)
T ss_pred eeeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHH------------cCCCEEEEC-CCCHHHHHHHH
Confidence 467666664333223333 333442 33 46789999999873 257999999 33332333344
Q ss_pred HHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 168 KKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 168 ~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
+.+++. .++++ +..++.-+.+...+....|+|.+
T Consensus 235 ~~~~~~--~~~i~-leAsGGIt~~ni~~ya~tGvD~I 268 (288)
T PRK07428 235 QLIRQQ--NPRVK-IEASGNITLETIRAVAETGVDYI 268 (288)
T ss_pred HHHHhc--CCCeE-EEEECCCCHHHHHHHHHcCCCEE
Confidence 445443 34555 55666777889999999999765
No 170
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=76.67 E-value=21 Score=30.19 Aligned_cols=97 Identities=26% Similarity=0.297 Sum_probs=60.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC--HHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT--GYELLKK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~--G~e~~~~ 169 (213)
+...++++||.-..+..|..+=-.....-....|.++....+.... ....-=.++.|..||..+ |+.+++.
T Consensus 29 ~~~D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l-------~~g~~valVSDAG~P~ISDPG~~LV~~ 101 (275)
T COG0313 29 KEVDVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLL-------KKGKSVALVSDAGTPLISDPGYELVRA 101 (275)
T ss_pred hhCCEEEEeccHHHHHHHHHhCCCCceecccCCcHHHHHHHHHHHH-------hcCCeEEEEecCCCCcccCccHHHHHH
Confidence 3567999999977666555542222222223345555555543322 222234688999999864 9999999
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCC
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGA 201 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~ 201 (213)
.++. .++|+.+.+.+.. ......+|.
T Consensus 102 a~~~----gi~V~~lPG~sA~--~tAL~~SGl 127 (275)
T COG0313 102 AREA----GIRVVPLPGPSAL--ITALSASGL 127 (275)
T ss_pred HHHc----CCcEEecCCccHH--HHHHHHcCC
Confidence 9975 5889988886543 344455564
No 171
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=76.32 E-value=33 Score=26.38 Aligned_cols=54 Identities=26% Similarity=0.344 Sum_probs=39.7
Q ss_pred ceeEEEEeCCCCC--------CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 148 KVNLIITDYTMPG--------MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 148 ~~dlil~D~~mp~--------~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
.+|.|+++..-|. ..|.+.++++++. .++||++..+-. .+....+..+|++++.
T Consensus 115 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pv~a~GGi~-~~~i~~~~~~Ga~~i~ 176 (196)
T cd00564 115 GADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL---VEIPVVAIGGIT-PENAAEVLAAGADGVA 176 (196)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCCC-HHHHHHHHHcCCCEEE
Confidence 4788887644332 3467888888764 468988887764 6788899999998874
No 172
>PRK14974 cell division protein FtsY; Provisional
Probab=76.32 E-value=50 Score=28.78 Aligned_cols=100 Identities=13% Similarity=0.151 Sum_probs=52.1
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHhhcCCEEEEEcCH-------HHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC
Q 048660 93 ELHVLAVDDSY---VDRKLIERLLQISSCKVTAVESG-------TRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT 162 (213)
Q Consensus 93 ~~~ILvVdD~~---~~~~~l~~~L~~~g~~v~~a~~g-------~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~ 162 (213)
+.+|++++-|. ...+.++.+....|..+.....+ .++++.. ....+|+||+|.. +..
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~-----------~~~~~DvVLIDTa--Gr~ 234 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA-----------KARGIDVVLIDTA--GRM 234 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH-----------HhCCCCEEEEECC--Ccc
Confidence 45788887663 33445555666667665544332 2333333 2345799999984 322
Q ss_pred --HHHHHHHHHhc--CCCCCCcEEEEecCCCHHHH--HHHH--HcCCCeee
Q 048660 163 --GYELLKKIKES--SVFREVPVVIMSSEDVLTQI--DSCL--EEGAEEYI 205 (213)
Q Consensus 163 --G~e~~~~ir~~--~~~~~~pII~lt~~~~~~~~--~~~~--~~G~~~~L 205 (213)
-..++.++++. ...++..++++.+....+.. .+.+ ..|.++++
T Consensus 235 ~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giI 285 (336)
T PRK14974 235 HTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVI 285 (336)
T ss_pred CCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEE
Confidence 23444444431 11355556666665443322 2222 25777754
No 173
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=76.13 E-value=9.2 Score=31.65 Aligned_cols=70 Identities=19% Similarity=0.128 Sum_probs=48.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcC------CEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH---
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISS------CKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG--- 163 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g------~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G--- 163 (213)
..+|-+||=|+.+.+..++++.... -.-....||...++.. ....||+|++|+.-|...+
T Consensus 100 ~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-----------~~~~yDvIi~D~~dp~~~~~~l 168 (246)
T PF01564_consen 100 VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-----------QEEKYDVIIVDLTDPDGPAPNL 168 (246)
T ss_dssp -SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-----------SST-EEEEEEESSSTTSCGGGG
T ss_pred cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-----------cCCcccEEEEeCCCCCCCcccc
Confidence 4589999999999999999986431 1234678877777653 2228999999998876443
Q ss_pred --HHHHHHHHhc
Q 048660 164 --YELLKKIKES 173 (213)
Q Consensus 164 --~e~~~~ir~~ 173 (213)
.++.+.+++.
T Consensus 169 ~t~ef~~~~~~~ 180 (246)
T PF01564_consen 169 FTREFYQLCKRR 180 (246)
T ss_dssp SSHHHHHHHHHH
T ss_pred cCHHHHHHHHhh
Confidence 4667777654
No 174
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=75.92 E-value=5.9 Score=33.05 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=30.7
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEecCCC------HHHHHHHHHcCCCeeeeCCC
Q 048660 162 TGYELLKKIKESSVFREVPVVIMSSEDV------LTQIDSCLEEGAEEYIVKPV 209 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~lt~~~~------~~~~~~~~~~G~~~~L~KP~ 209 (213)
+.++.++.+|+. ..++|++.|+-.+. .....++.++|+++++.-..
T Consensus 73 ~~~~~v~~ir~~--~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDl 124 (256)
T TIGR00262 73 KCFELLKKVRQK--HPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADL 124 (256)
T ss_pred HHHHHHHHHHhc--CCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCC
Confidence 456667777753 24677777776654 55677788888888766543
No 175
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=75.81 E-value=4.7 Score=33.73 Aligned_cols=48 Identities=23% Similarity=0.396 Sum_probs=35.1
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEecCC------CHHHHHHHHHcCCCeeeeCCCCC
Q 048660 162 TGYELLKKIKESSVFREVPVVIMSSED------VLTQIDSCLEEGAEEYIVKPVKL 211 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~lt~~~------~~~~~~~~~~~G~~~~L~KP~~~ 211 (213)
+.++.++.+|+. ..++|++++|-.+ -.....+|.++|+++.|.-.+.+
T Consensus 75 ~~~~~~~~~r~~--~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ 128 (258)
T PRK13111 75 DVFELVREIREK--DPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPP 128 (258)
T ss_pred HHHHHHHHHHhc--CCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCH
Confidence 467788888854 4678999888653 34568889999999998854433
No 176
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=75.66 E-value=17 Score=30.78 Aligned_cols=42 Identities=24% Similarity=0.338 Sum_probs=34.6
Q ss_pred CHHHHHHHHHhcCCCCCCcEE--EEecCCCHHHHHHHHHcCCCeeee
Q 048660 162 TGYELLKKIKESSVFREVPVV--IMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII--~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.++++++.+++. ..+||| +..+-..+++...+++.|+++++.
T Consensus 181 ~d~elLk~l~~~---~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaV 224 (283)
T cd04727 181 APYELVKETAKL---GRLPVVNFAAGGVATPADAALMMQLGADGVFV 224 (283)
T ss_pred CCHHHHHHHHHh---cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 578889999875 358997 677777899999999999999864
No 177
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=75.31 E-value=29 Score=29.45 Aligned_cols=69 Identities=20% Similarity=0.199 Sum_probs=49.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcC--C---EE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC----
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISS--C---KV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT---- 162 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g--~---~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~---- 162 (213)
--+|.+||=|+.+.+..+++|.... . ++ ....||.+.++.. ...||+|++|..-|..-
T Consensus 100 ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------------~~~fDvIi~D~tdp~gp~~~L 167 (282)
T COG0421 100 VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------------EEKFDVIIVDSTDPVGPAEAL 167 (282)
T ss_pred cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------------CCcCCEEEEcCCCCCCccccc
Confidence 4589999999999999999997553 2 33 4567776666653 23799999999888322
Q ss_pred -HHHHHHHHHhc
Q 048660 163 -GYELLKKIKES 173 (213)
Q Consensus 163 -G~e~~~~ir~~ 173 (213)
..++.+.+++.
T Consensus 168 ft~eFy~~~~~~ 179 (282)
T COG0421 168 FTEEFYEGCRRA 179 (282)
T ss_pred CCHHHHHHHHHh
Confidence 35677777765
No 178
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=75.22 E-value=7.4 Score=31.87 Aligned_cols=54 Identities=22% Similarity=0.390 Sum_probs=43.2
Q ss_pred eEEEEeCCCCCC---CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 150 NLIITDYTMPGM---TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 150 dlil~D~~mp~~---~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.++++|+..-++ ..+++++.+.+. ..+|+++-.+-.+.++..+++..|+++.+.
T Consensus 161 ~li~~di~~~G~~~g~~~~~~~~i~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 161 ELIVLDIDRVGSGQGPDLELLERLAAR---ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred eEEEEEcCccccCCCcCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 599999976542 235677888764 478999999999999999999999998764
No 179
>PLN02335 anthranilate synthase
Probab=74.92 E-value=8.8 Score=31.25 Aligned_cols=81 Identities=11% Similarity=0.078 Sum_probs=48.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC-CC-CCCCHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY-TM-PGMTGYELLKK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~-~m-p~~~G~e~~~~ 169 (213)
+..+|||||.....--.+.+.|++.|+.+.++......++.+ ....||.|++-= -+ |.-.| ...+.
T Consensus 17 ~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~-----------~~~~~d~iVisgGPg~p~d~~-~~~~~ 84 (222)
T PLN02335 17 QNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEEL-----------KRKNPRGVLISPGPGTPQDSG-ISLQT 84 (222)
T ss_pred ccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHH-----------HhcCCCEEEEcCCCCChhhcc-chHHH
Confidence 456899999777788889999999999887776532112222 112466655532 11 11111 23445
Q ss_pred HHhcCCCCCCcEEEEec
Q 048660 170 IKESSVFREVPVVIMSS 186 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~ 186 (213)
+++. ...+||+.+.-
T Consensus 85 ~~~~--~~~~PiLGICl 99 (222)
T PLN02335 85 VLEL--GPLVPLFGVCM 99 (222)
T ss_pred HHHh--CCCCCEEEecH
Confidence 5543 34688887763
No 180
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=74.90 E-value=14 Score=30.39 Aligned_cols=54 Identities=19% Similarity=0.303 Sum_probs=43.6
Q ss_pred eEEEEeCCCCCC-C--HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 150 NLIITDYTMPGM-T--GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 150 dlil~D~~mp~~-~--G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+|++|+..-++ . .+++++.+.+. .++|+++-.+-.+.++..++++.|+++.+.
T Consensus 164 ~ii~tdi~~dGt~~G~~~~li~~l~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 164 GIIYTDIAKDGKMSGPNFELTGQLVKA---TTIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred EEEEecccCcCCCCccCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 699999976553 3 36677888764 478999999899999999999999998764
No 181
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=74.75 E-value=14 Score=33.79 Aligned_cols=55 Identities=18% Similarity=0.190 Sum_probs=42.2
Q ss_pred CceeEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 147 LKVNLIITDYTMPGM-TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 147 ~~~dlil~D~~mp~~-~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
...|.|++|...+.. .-.+++++||+. ++++|||+ -.-...+....+.++|++.+
T Consensus 236 aGVd~i~~D~a~g~~~~~~~~i~~i~~~--~~~~~vi~-g~~~t~~~~~~l~~~G~d~i 291 (475)
T TIGR01303 236 AGVDVLVIDTAHGHQVKMISAIKAVRAL--DLGVPIVA-GNVVSAEGVRDLLEAGANII 291 (475)
T ss_pred hCCCEEEEeCCCCCcHHHHHHHHHHHHH--CCCCeEEE-eccCCHHHHHHHHHhCCCEE
Confidence 357899999988543 456688899876 57888876 33567788999999999765
No 182
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=74.58 E-value=15 Score=30.10 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=41.0
Q ss_pred eEEEEeCCCCC-CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 150 NLIITDYTMPG-MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 150 dlil~D~~mp~-~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+|++|+.--+ +.|++ .+.+. ..++|+|+-.+-.+.++..++...|+++.+.
T Consensus 158 ~ii~t~i~~dGt~~G~d---~l~~~--~~~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 158 RFIYTSIERDGTLTGIE---EIERF--WGDEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred EEEEEeccchhcccCHH---HHHHh--cCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 58999998766 47877 44332 2478999999999999999999999998654
No 183
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=74.15 E-value=14 Score=29.08 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=27.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcC
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVES 125 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~ 125 (213)
+||||||.....-..+..+|++.|+.+.+...
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~~ 33 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVNV 33 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEEC
Confidence 58999999888888899999999987777653
No 184
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=73.96 E-value=44 Score=26.71 Aligned_cols=80 Identities=14% Similarity=0.121 Sum_probs=51.1
Q ss_pred hhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEe-CCC-CCCCHHHHHHHHHhcCCCCCCcEEEEecCCCH
Q 048660 114 QISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITD-YTM-PGMTGYELLKKIKESSVFREVPVVIMSSEDVL 190 (213)
Q Consensus 114 ~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D-~~m-p~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~ 190 (213)
...|..+. .+.+.+++.+..+ ..+|.+.+- ... ....+++.++++++.- ...+|+++..+-.+.
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~------------~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~-~~~~pvia~gGI~s~ 184 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALA------------LGAKIIGINNRDLKTFEVDLNTTERLAPLI-PKDVILVSESGISTP 184 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHH------------cCCCEEEEeCCCccccCcCHHHHHHHHHhC-CCCCEEEEEcCCCCH
Confidence 44677653 4556666555542 134555433 110 0123457788887641 146899999999999
Q ss_pred HHHHHHHHcCCCeeee
Q 048660 191 TQIDSCLEEGAEEYIV 206 (213)
Q Consensus 191 ~~~~~~~~~G~~~~L~ 206 (213)
++..++.++|+++++.
T Consensus 185 edi~~~~~~Ga~gviv 200 (217)
T cd00331 185 EDVKRLAEAGADAVLI 200 (217)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999999864
No 185
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=73.96 E-value=25 Score=28.53 Aligned_cols=54 Identities=28% Similarity=0.344 Sum_probs=43.4
Q ss_pred eEEEEeCCCCCC-C--HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 150 NLIITDYTMPGM-T--GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 150 dlil~D~~mp~~-~--G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+|++|+.--++ . .+++++.+++. ..+|+|+--+-.+.++..++.+.|+++.+.
T Consensus 156 ~ii~tdI~~dGt~~G~d~eli~~i~~~---~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 156 GLIVLDIHSVGTMKGPNLELLTKTLEL---SEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred EEEEEECCccccCCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 689999976443 3 46788888874 468999888889999999999999998764
No 186
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=73.14 E-value=31 Score=28.59 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=63.9
Q ss_pred cEEEEEeCCH----HHHHH--HHHHHhhcCCEEEEEcC--HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-
Q 048660 94 LHVLAVDDSY----VDRKL--IERLLQISSCKVTAVES--GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY- 164 (213)
Q Consensus 94 ~~ILvVdD~~----~~~~~--l~~~L~~~g~~v~~a~~--g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~- 164 (213)
+++=|+-|+. +.-+. ..+.|-+.||.|.-..+ .--|-+.. ..+ -..+|-+.-|-.+|.
T Consensus 101 iKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLe-e~G------------caavMPl~aPIGSg~G 167 (262)
T COG2022 101 IKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLE-EAG------------CAAVMPLGAPIGSGLG 167 (262)
T ss_pred EEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHH-hcC------------ceEeccccccccCCcC
Confidence 4555665542 22222 33456778999875543 33333322 111 146777777765543
Q ss_pred ----HHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 165 ----ELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 165 ----e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..++.|++. .++|||+=.+-..+.+...+++.|+|+.|.
T Consensus 168 ~~n~~~l~iiie~---a~VPviVDAGiG~pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 168 LQNPYNLEIIIEE---ADVPVIVDAGIGTPSDAAQAMELGADAVLL 210 (262)
T ss_pred cCCHHHHHHHHHh---CCCCEEEeCCCCChhHHHHHHhcccceeeh
Confidence 467778775 389999999999999999999999999875
No 187
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=73.06 E-value=29 Score=30.28 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=41.2
Q ss_pred ceeEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 148 KVNLIITDYTMPGM-TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 148 ~~dlil~D~~mp~~-~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
.+|+|++|...... .-++.+++||+. ++..+ |+-..-...+....+.++|+|...
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~--~p~~~-viaGNV~T~e~a~~Li~aGAD~ik 176 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREA--FPEHT-IMAGNVVTGEMVEELILSGADIVK 176 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhh--CCCCe-EEEecccCHHHHHHHHHcCCCEEE
Confidence 58999999977653 456789999986 55543 333436678889999999999875
No 188
>PLN02591 tryptophan synthase
Probab=72.80 E-value=5.9 Score=33.03 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=34.5
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEecCCC------HHHHHHHHHcCCCeeeeCCCCCC
Q 048660 162 TGYELLKKIKESSVFREVPVVIMSSEDV------LTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~lt~~~~------~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+.+++++++|+. .++|+|+||-.+. .....+|.++|+++.|.-.+..+
T Consensus 65 ~~~~~~~~~r~~---~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~e 118 (250)
T PLN02591 65 SVISMLKEVAPQ---LSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLE 118 (250)
T ss_pred HHHHHHHHHhcC---CCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHH
Confidence 467778888843 5689888887542 34578888999999988765543
No 189
>PRK05637 anthranilate synthase component II; Provisional
Probab=72.64 E-value=20 Score=28.84 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=29.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESG 126 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g 126 (213)
.+||++|....+-..+..+|++.|+.+.++.+.
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~ 34 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNT 34 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCC
Confidence 379999999999999999999999988887664
No 190
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=72.18 E-value=50 Score=30.86 Aligned_cols=87 Identities=14% Similarity=0.195 Sum_probs=47.6
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHH----
Q 048660 93 ELHVLAVDDSYV---DRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYE---- 165 (213)
Q Consensus 93 ~~~ILvVdD~~~---~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e---- 165 (213)
+.+|.+++-|.. ..+.+..+-...|..+..+.+..+..+.++. -..+|+||+|. +++...+
T Consensus 380 gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~----------l~~~DLVLIDT--aG~s~~D~~l~ 447 (559)
T PRK12727 380 PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER----------LRDYKLVLIDT--AGMGQRDRALA 447 (559)
T ss_pred CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHH----------hccCCEEEecC--CCcchhhHHHH
Confidence 357888876542 1233444445567777777776666665532 23589999998 4433221
Q ss_pred -HHHHHHhcCCCCCCcEEEEecCCCHHHH
Q 048660 166 -LLKKIKESSVFREVPVVIMSSEDVLTQI 193 (213)
Q Consensus 166 -~~~~ir~~~~~~~~pII~lt~~~~~~~~ 193 (213)
.+..|+.. .....++++++.....+.
T Consensus 448 eeL~~L~aa--~~~a~lLVLpAtss~~Dl 474 (559)
T PRK12727 448 AQLNWLRAA--RQVTSLLVLPANAHFSDL 474 (559)
T ss_pred HHHHHHHHh--hcCCcEEEEECCCChhHH
Confidence 22334433 123456667666554443
No 191
>PLN02366 spermidine synthase
Probab=71.95 E-value=61 Score=27.83 Aligned_cols=70 Identities=10% Similarity=0.076 Sum_probs=45.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc-----CCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC----
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQIS-----SCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT---- 162 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~-----g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~---- 162 (213)
..+|-+||=|+.+-+..++.+... +-++. ...|+.+.++.. ....||+|++|..-|...
T Consensus 115 v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-----------~~~~yDvIi~D~~dp~~~~~~L 183 (308)
T PLN02366 115 VEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-----------PEGTYDAIIVDSSDPVGPAQEL 183 (308)
T ss_pred CCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-----------cCCCCCEEEEcCCCCCCchhhh
Confidence 458999999998888888887543 12343 446666655433 234799999998766432
Q ss_pred -HHHHHHHHHhc
Q 048660 163 -GYELLKKIKES 173 (213)
Q Consensus 163 -G~e~~~~ir~~ 173 (213)
..++.+.+++.
T Consensus 184 ~t~ef~~~~~~~ 195 (308)
T PLN02366 184 FEKPFFESVARA 195 (308)
T ss_pred hHHHHHHHHHHh
Confidence 23566676654
No 192
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=71.75 E-value=36 Score=26.47 Aligned_cols=80 Identities=19% Similarity=0.207 Sum_probs=51.8
Q ss_pred HHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC-------CHHHHHHHHHhcCCCCCCcE
Q 048660 109 IERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM-------TGYELLKKIKESSVFREVPV 181 (213)
Q Consensus 109 l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~-------~G~e~~~~ir~~~~~~~~pI 181 (213)
.+..+......-..+.+.+++.+..+ ...|.+++.-.-|.. -|++.++++++. ..+||
T Consensus 88 ~r~~~~~~~~ig~S~h~~~e~~~a~~------------~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~---~~~pv 152 (180)
T PF02581_consen 88 ARKLLGPDKIIGASCHSLEEAREAEE------------LGADYVFLGPVFPTSSKPGAPPLGLDGLREIARA---SPIPV 152 (180)
T ss_dssp HHHHHTTTSEEEEEESSHHHHHHHHH------------CTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHH---TSSCE
T ss_pred hhhhcccceEEEeecCcHHHHHHhhh------------cCCCEEEECCccCCCCCccccccCHHHHHHHHHh---CCCCE
Confidence 34445433334456788888666542 246888877654432 389999998875 35899
Q ss_pred EEEecCCCHHHHHHHHHcCCCee
Q 048660 182 VIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 182 I~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
+++-+-. .+....+.++|++++
T Consensus 153 ~AlGGI~-~~~i~~l~~~Ga~gv 174 (180)
T PF02581_consen 153 YALGGIT-PENIPELREAGADGV 174 (180)
T ss_dssp EEESS---TTTHHHHHHTT-SEE
T ss_pred EEEcCCC-HHHHHHHHHcCCCEE
Confidence 9998875 556778899999886
No 193
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=71.67 E-value=24 Score=30.36 Aligned_cols=62 Identities=21% Similarity=0.167 Sum_probs=44.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhc--CC---EE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHH
Q 048660 95 HVLAVDDSYVDRKLIERLLQIS--SC---KV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELL 167 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~--g~---~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~ 167 (213)
.|+++|-+..+.+.=+.++... || +| ....||...++.+ ....+|+|++|..=|.+.+..+.
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~-----------~~~~~dVii~dssdpvgpa~~lf 214 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL-----------KENPFDVIITDSSDPVGPACALF 214 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh-----------ccCCceEEEEecCCccchHHHHH
Confidence 4677777777777777777543 44 33 3456888888877 45689999999999998877643
No 194
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=71.52 E-value=5.1 Score=33.60 Aligned_cols=49 Identities=20% Similarity=0.399 Sum_probs=36.2
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEecCC------CHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 162 TGYELLKKIKESSVFREVPVVIMSSED------VLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~lt~~~------~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+.+++++.+|+. ..++|+++||-.+ -.....+|.++|++++|.--+..+
T Consensus 73 ~~~~~~~~ir~~--~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~e 127 (259)
T PF00290_consen 73 KIFELVKEIRKK--EPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPE 127 (259)
T ss_dssp HHHHHHHHHHHH--CTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGG
T ss_pred HHHHHHHHHhcc--CCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChH
Confidence 467888888854 5789999999853 334677788999999998755544
No 195
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=70.57 E-value=65 Score=27.23 Aligned_cols=94 Identities=14% Similarity=0.162 Sum_probs=57.2
Q ss_pred EEEEEeCCHHHHHHHHHHH----hhcCC---EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHH
Q 048660 95 HVLAVDDSYVDRKLIERLL----QISSC---KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELL 167 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L----~~~g~---~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~ 167 (213)
.|||-|++-.....+...+ ++.++ ..+.+++.+||.+.+. ..+|+|.+|= |+--++.
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~------------~GaDiI~LDn----~~~e~l~ 217 (273)
T PRK05848 154 CLMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMN------------AGADIVMCDN----MSVEEIK 217 (273)
T ss_pred hhCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHH------------cCCCEEEECC----CCHHHHH
Confidence 3566666544433334433 33443 3457889999999883 2578999873 3333333
Q ss_pred HHHHhc-CCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 168 KKIKES-SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 168 ~~ir~~-~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
+.++.. ...+++ .+..++.-+.+...++.+.|+|.+.
T Consensus 218 ~~v~~~~~~~~~~-~ieAsGgIt~~ni~~ya~~GvD~Is 255 (273)
T PRK05848 218 EVVAYRNANYPHV-LLEASGNITLENINAYAKSGVDAIS 255 (273)
T ss_pred HHHHHhhccCCCe-EEEEECCCCHHHHHHHHHcCCCEEE
Confidence 333321 112343 5667888899999999999998653
No 196
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=70.57 E-value=51 Score=29.18 Aligned_cols=90 Identities=10% Similarity=0.102 Sum_probs=51.3
Q ss_pred cEEEEEeCCHH---HHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC-CCCCCHH--HHH
Q 048660 94 LHVLAVDDSYV---DRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT-MPGMTGY--ELL 167 (213)
Q Consensus 94 ~~ILvVdD~~~---~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~-mp~~~G~--e~~ 167 (213)
.+|.++..|.. -.+.|+.+-+..|..+..+.++.+....+.. -..+|+||+|.- +...+.. +.+
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~----------l~~~DlVLIDTaG~~~~d~~l~e~L 237 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE----------LRNKHMVLIDTIGMSQRDRTVSDQI 237 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH----------hcCCCEEEEcCCCCCcccHHHHHHH
Confidence 47777776654 3456666666778877777776665544432 135799999983 2222222 233
Q ss_pred HHHHhcCCCCCCcEEEEecCCCHHHHH
Q 048660 168 KKIKESSVFREVPVVIMSSEDVLTQID 194 (213)
Q Consensus 168 ~~ir~~~~~~~~pII~lt~~~~~~~~~ 194 (213)
..+.... .+.-.++++++....+...
T Consensus 238 a~L~~~~-~~~~~lLVLsAts~~~~l~ 263 (374)
T PRK14722 238 AMLHGAD-TPVQRLLLLNATSHGDTLN 263 (374)
T ss_pred HHHhccC-CCCeEEEEecCccChHHHH
Confidence 3443221 2233477888776665543
No 197
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=70.47 E-value=54 Score=28.07 Aligned_cols=91 Identities=14% Similarity=0.135 Sum_probs=56.3
Q ss_pred EEEEEeCCHHHHHHHHHHH----hhcC--CEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 95 HVLAVDDSYVDRKLIERLL----QISS--CKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L----~~~g--~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
.|||-|++-...-.+...+ +..+ ...+.+++.++|.+.+. ..+|+|++|-.-| -++-+
T Consensus 181 ~iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~------------~gaDiI~LDn~s~----e~~~~ 244 (296)
T PRK09016 181 AFLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALK------------AGADIIMLDNFTT----EQMRE 244 (296)
T ss_pred hhccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH------------cCCCEEEeCCCCh----HHHHH
Confidence 3566665533332233333 2222 25567899999999884 2479999994333 23333
Q ss_pred HHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 169 KIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
.++.. ..+ ..+..|+.-+.+...+....|+|-+
T Consensus 245 av~~~--~~~-~~ieaSGGI~~~ni~~yA~tGVD~I 277 (296)
T PRK09016 245 AVKRT--NGR-ALLEVSGNVTLETLREFAETGVDFI 277 (296)
T ss_pred HHHhh--cCC-eEEEEECCCCHHHHHHHHhcCCCEE
Confidence 33322 122 3677888889999999999999754
No 198
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=70.47 E-value=28 Score=28.39 Aligned_cols=54 Identities=30% Similarity=0.492 Sum_probs=41.3
Q ss_pred eEEEEeCCCCC-CC--HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 150 NLIITDYTMPG-MT--GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 150 dlil~D~~mp~-~~--G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+|++|+.--+ +. .+++++.+++. .++|+|+--+-.+.++..++.+.|+++.+.
T Consensus 163 ~ii~tdi~~dGt~~G~d~~~~~~l~~~---~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 163 EIILTDIDRDGTMQGPDLELLKQLAEA---VNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEEEEETTTTTTSSS--HHHHHHHHHH---HSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred EEEEeeccccCCcCCCCHHHHHHHHHH---cCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 58999997654 33 45678888875 388999888888999999999999988764
No 199
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=70.25 E-value=35 Score=27.10 Aligned_cols=58 Identities=17% Similarity=0.336 Sum_probs=34.7
Q ss_pred eeEEEEeCCCCCCC-------HHHHHHHHHhcCCCCCC-cEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 149 VNLIITDYTMPGMT-------GYELLKKIKESSVFREV-PVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 149 ~dlil~D~~mp~~~-------G~e~~~~ir~~~~~~~~-pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.|.++++..-|+.+ +++.++++++......+ +.|++.+.-+.+...++.+.|+|.+..
T Consensus 132 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvv 197 (220)
T PRK05581 132 LDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVA 197 (220)
T ss_pred CCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 56666665445543 33445555542111122 556677777778888899999998754
No 200
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=70.04 E-value=51 Score=25.79 Aligned_cols=85 Identities=22% Similarity=0.199 Sum_probs=53.6
Q ss_pred HHHHHHHHhhcCCEEE----EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC-----CCCCCHHHHHHHHHhcCCC
Q 048660 106 RKLIERLLQISSCKVT----AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT-----MPGMTGYELLKKIKESSVF 176 (213)
Q Consensus 106 ~~~l~~~L~~~g~~v~----~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~-----mp~~~G~e~~~~ir~~~~~ 176 (213)
...+....++.|..+. ...+..++++.+ ....|.+.+... .....+.+.++.+++.
T Consensus 92 ~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~------------~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~--- 156 (202)
T cd04726 92 IKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLL------------KLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL--- 156 (202)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHH------------HCCCCEEEEcCcccccccCCCCCHHHHHHHHhh---
Confidence 3445555666777654 445777777644 224577766421 1123567777777763
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 177 REVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 177 ~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.++|+++.-+- +.+...+++++|++.++.
T Consensus 157 ~~~~i~~~GGI-~~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 157 LGVKVAVAGGI-TPDTLPEFKKAGADIVIV 185 (202)
T ss_pred cCCCEEEECCc-CHHHHHHHHhcCCCEEEE
Confidence 46777755554 588899999999998753
No 201
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=69.92 E-value=74 Score=27.64 Aligned_cols=96 Identities=11% Similarity=0.080 Sum_probs=62.6
Q ss_pred EEEEEe----CCHHHHHHHHHHHhhcC-CEEE--EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC---------
Q 048660 95 HVLAVD----DSYVDRKLIERLLQISS-CKVT--AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM--------- 158 (213)
Q Consensus 95 ~ILvVd----D~~~~~~~l~~~L~~~g-~~v~--~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m--------- 158 (213)
.++++| +.....+.++.+=+.++ ..|. .+.+.++|..... ...|.+.+-..-
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~------------aGad~i~vg~~~G~~~~t~~~ 180 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN------------AGADATKVGIGPGKVCITKIK 180 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH------------cCcCEEEECCCCCcccccccc
Confidence 688886 33445555555555554 3333 3678888877763 235665533210
Q ss_pred -C-CCC--HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 159 -P-GMT--GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 159 -p-~~~--G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
. +.. ++.+++.+++. .++|||+-.+-....+..+|+..|++.+.
T Consensus 181 ~g~~~~~w~l~ai~~~~~~---~~ipVIAdGGI~~~~Di~KaLa~GA~aV~ 228 (326)
T PRK05458 181 TGFGTGGWQLAALRWCAKA---ARKPIIADGGIRTHGDIAKSIRFGATMVM 228 (326)
T ss_pred cCCCCCccHHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHhCCCEEE
Confidence 0 112 56668888764 36899999999999999999999999864
No 202
>PLN02823 spermine synthase
Probab=69.90 E-value=51 Score=28.68 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=38.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc-----CCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQIS-----SCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP 159 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~-----g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp 159 (213)
..+|.+||=|+.+-+..++.+... +-++. ...|+.+.++. ....||+|++|+.-|
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~------------~~~~yDvIi~D~~dp 187 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK------------RDEKFDVIIGDLADP 187 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh------------CCCCccEEEecCCCc
Confidence 458999999999999999998632 12333 45666665543 234799999998554
No 203
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=69.84 E-value=49 Score=33.87 Aligned_cols=100 Identities=11% Similarity=0.159 Sum_probs=66.2
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CC-H
Q 048660 93 ELHVLAV----DDSYVDRKLIERLLQISSCKVTAVE---SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MT-G 163 (213)
Q Consensus 93 ~~~ILvV----dD~~~~~~~l~~~L~~~g~~v~~a~---~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~-G 163 (213)
..+|++. |-+..=..++..+|+..||+|+-.. ..++.++.+ .+..+|+|-+...|.. +. -
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa-----------~e~~~diVgLS~Lmt~t~~~m 800 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAA-----------KDHNADVIGLSGLITPSLDEM 800 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH-----------HHhCCCEEEEcCcccccHHHH
Confidence 4577777 6677777777888899999988653 456667766 4557999999887754 44 4
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHH-H--HHcCCCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDS-C--LEEGAEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~-~--~~~G~~~~L 205 (213)
.++++.+++. ...+||++=.+..+...... . .-.|++.|-
T Consensus 801 ~~vi~~L~~~--g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~ 843 (1178)
T TIGR02082 801 KEVAEEMNRR--GITIPLLIGGAATSKTHTAVKIAPIYKGPVVYV 843 (1178)
T ss_pred HHHHHHHHhc--CCCceEEEeccccchhHHHhhhhhhccCCeEEe
Confidence 4578888886 34677776555444444332 1 122776663
No 204
>PRK04302 triosephosphate isomerase; Provisional
Probab=69.72 E-value=58 Score=26.30 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.++++.+|+. ..++||+.=.+-...+....+.+.|+|+++.
T Consensus 161 ~~~~~~ir~~--~~~~pvi~GggI~~~e~~~~~~~~gadGvlV 201 (223)
T PRK04302 161 EDAVEAVKKV--NPDVKVLCGAGISTGEDVKAALELGADGVLL 201 (223)
T ss_pred HHHHHHHHhc--cCCCEEEEECCCCCHHHHHHHHcCCCCEEEE
Confidence 3456667764 3468998877778889999999999999875
No 205
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=69.72 E-value=33 Score=31.37 Aligned_cols=70 Identities=19% Similarity=0.188 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHhhcC-CEEEEEc------CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC-CHHHHHHHHHhc
Q 048660 102 SYVDRKLIERLLQISS-CKVTAVE------SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM-TGYELLKKIKES 173 (213)
Q Consensus 102 ~~~~~~~l~~~L~~~g-~~v~~a~------~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~-~G~e~~~~ir~~ 173 (213)
.|.-...+...|++.| ++|...+ +.++..+.+ ....||+|.+-..-+.. ...++++.+|+.
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l-----------~~~~pdvVgis~~t~~~~~a~~~~~~~k~~ 89 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERL-----------RAHCPDLVLITAITPAIYIACETLKFARER 89 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHH-----------HhcCcCEEEEecCcccHHHHHHHHHHHHHH
Confidence 4556678888898889 6776653 222333444 34579999998765654 355778888876
Q ss_pred CCCCCCcEEEE
Q 048660 174 SVFREVPVVIM 184 (213)
Q Consensus 174 ~~~~~~pII~l 184 (213)
.++++||+=
T Consensus 90 --~P~~~iV~G 98 (497)
T TIGR02026 90 --LPNAIIVLG 98 (497)
T ss_pred --CCCCEEEEc
Confidence 567766643
No 206
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.70 E-value=70 Score=27.29 Aligned_cols=93 Identities=14% Similarity=0.106 Sum_probs=58.7
Q ss_pred EEEEeCCHHHH----HHHHHHHhhcC--CEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 96 VLAVDDSYVDR----KLIERLLQISS--CKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 96 ILvVdD~~~~~----~~l~~~L~~~g--~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
|||-|++-... ..++++-+..+ ...+.+++.+||.+.+. ...|+|.+| +|.--+--++++.
T Consensus 173 ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~------------~gaDiI~LD-nm~~e~vk~av~~ 239 (289)
T PRK07896 173 ALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLA------------EGAELVLLD-NFPVWQTQEAVQR 239 (289)
T ss_pred eeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHH------------cCCCEEEeC-CCCHHHHHHHHHH
Confidence 66666553332 22333333333 25567889999999883 257999999 4443233344444
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
+++. .++ ..+..|+.-+.+........|+|-+
T Consensus 240 ~~~~--~~~-v~ieaSGGI~~~ni~~yA~tGvD~I 271 (289)
T PRK07896 240 RDAR--APT-VLLESSGGLTLDTAAAYAETGVDYL 271 (289)
T ss_pred Hhcc--CCC-EEEEEECCCCHHHHHHHHhcCCCEE
Confidence 4443 233 4677898999999999999999765
No 207
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=69.59 E-value=67 Score=26.97 Aligned_cols=100 Identities=13% Similarity=0.186 Sum_probs=52.4
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHhhcCCEEEEEcCH----H---HHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC
Q 048660 92 KELHVLAVDDSYV---DRKLIERLLQISSCKVTAVESG----T---RALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM 161 (213)
Q Consensus 92 ~~~~ILvVdD~~~---~~~~l~~~L~~~g~~v~~a~~g----~---eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~ 161 (213)
.+.+|++++-|.. ..+.++.+.+..|..+.....+ . ++++.. ....+|+||+|. |+.
T Consensus 99 ~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~-----------~~~~~D~ViIDT--~G~ 165 (272)
T TIGR00064 99 QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA-----------KARNIDVVLIDT--AGR 165 (272)
T ss_pred cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH-----------HHCCCCEEEEeC--CCC
Confidence 3568999997752 2345566666677655543322 1 233332 234689999998 333
Q ss_pred C--HHHHHHHHHh---c-----CCCCCCcEEEEecCCCHHHHHHH---H-HcCCCee
Q 048660 162 T--GYELLKKIKE---S-----SVFREVPVVIMSSEDVLTQIDSC---L-EEGAEEY 204 (213)
Q Consensus 162 ~--G~e~~~~ir~---~-----~~~~~~pII~lt~~~~~~~~~~~---~-~~G~~~~ 204 (213)
. .-.++.++++ . ...++-.++++.+....+....+ . ..|.+++
T Consensus 166 ~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~ 222 (272)
T TIGR00064 166 LQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGI 222 (272)
T ss_pred CcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEE
Confidence 2 2233333332 1 01245567778776655433322 2 2455554
No 208
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=69.33 E-value=19 Score=32.91 Aligned_cols=55 Identities=15% Similarity=0.279 Sum_probs=41.8
Q ss_pred CceeEEEEeCCCCC-CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 147 LKVNLIITDYTMPG-MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 147 ~~~dlil~D~~mp~-~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
...|++++|..... .+-++.++.|++. ++++|||+ ..-.+.+....+.++|++.+
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~--~p~~~vi~-g~v~t~e~a~~l~~aGad~i 294 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAK--YPDVQIIA-GNVATAEAARALIEAGADAV 294 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhh--CCCCCEEE-eccCCHHHHHHHHHcCCCEE
Confidence 35789999975433 3566788888876 56788776 66667888999999999876
No 209
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=69.06 E-value=9 Score=32.52 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=35.5
Q ss_pred CHHHHHHHHHhcCCCCCCcEE--EEecCCCHHHHHHHHHcCCCeeee
Q 048660 162 TGYELLKKIKESSVFREVPVV--IMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII--~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.++++++++++. ..+||| +..+-..+++...+++.|+++++.
T Consensus 184 ~~~elLkei~~~---~~iPVV~fAiGGI~TPedAa~~melGAdGVaV 227 (287)
T TIGR00343 184 VPVELLLEVLKL---GKLPVVNFAAGGVATPADAALMMQLGADGVFV 227 (287)
T ss_pred CCHHHHHHHHHh---CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEE
Confidence 688999999875 368998 777777999999999999999753
No 210
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=68.75 E-value=23 Score=34.20 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=31.3
Q ss_pred hcCCccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCH
Q 048660 89 ECSKELHVLAVDDSYVDRKLIERLLQISSCKVTAVESG 126 (213)
Q Consensus 89 ~~~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g 126 (213)
....+.+|||||-...+-..+..+|++.|+.+.++...
T Consensus 512 ~~~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~ 549 (717)
T TIGR01815 512 RGGEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHS 549 (717)
T ss_pred CCCCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECC
Confidence 34567899999988878889999999999988777543
No 211
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=68.72 E-value=18 Score=32.76 Aligned_cols=54 Identities=17% Similarity=0.351 Sum_probs=41.8
Q ss_pred ceeEEEEeCCCCC-CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 148 KVNLIITDYTMPG-MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 148 ~~dlil~D~~mp~-~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
..|+|.+|..-.. ....+.+++||+. ++++||++ ..-.+.+....+.++|++.+
T Consensus 236 G~d~I~vd~a~g~~~~~~~~i~~i~~~--~~~~~vi~-G~v~t~~~a~~l~~aGad~i 290 (450)
T TIGR01302 236 GVDVIVIDSSHGHSIYVIDSIKEIKKT--YPDLDIIA-GNVATAEQAKALIDAGADGL 290 (450)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHHHh--CCCCCEEE-EeCCCHHHHHHHHHhCCCEE
Confidence 5799999996543 3567788888876 56888876 44556788899999999876
No 212
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=68.69 E-value=39 Score=34.68 Aligned_cols=85 Identities=12% Similarity=0.164 Sum_probs=60.4
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CC-H
Q 048660 93 ELHVLAV----DDSYVDRKLIERLLQISSCKVTAVE---SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MT-G 163 (213)
Q Consensus 93 ~~~ILvV----dD~~~~~~~l~~~L~~~g~~v~~a~---~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~-G 163 (213)
..+||+. |-+..=..++..+|+..||+|+-.. ..++.++.+ .+..+|+|.+...|.. +. -
T Consensus 751 ~gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa-----------~e~~~diVgLS~L~t~s~~~m 819 (1229)
T PRK09490 751 NGKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETA-----------KEENADIIGLSGLITPSLDEM 819 (1229)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH-----------HHhCCCEEEEcCcchhhHHHH
Confidence 4578877 6677777788888999999987653 456666666 4557999999987754 43 4
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCH
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVL 190 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~ 190 (213)
.++++.+++. ..++||++-.+..+.
T Consensus 820 ~~~i~~L~~~--g~~v~v~vGGa~~s~ 844 (1229)
T PRK09490 820 VHVAKEMERQ--GFTIPLLIGGATTSK 844 (1229)
T ss_pred HHHHHHHHhc--CCCCeEEEEeeccch
Confidence 5578888886 447887765544443
No 213
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=68.67 E-value=9.6 Score=31.98 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=34.6
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEecCC------CHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 162 TGYELLKKIKESSVFREVPVVIMSSED------VLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~lt~~~------~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+.+++++++|+ ..++|+++||-.+ -.....+|.++|+++++.--...+
T Consensus 78 ~~~~~~~~~r~---~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~e 131 (263)
T CHL00200 78 KILSILSEVNG---EIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYE 131 (263)
T ss_pred HHHHHHHHHhc---CCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHH
Confidence 46778888884 3578888888764 245678888999999887655443
No 214
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=68.25 E-value=18 Score=35.90 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=29.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEc
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVE 124 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~ 124 (213)
.+.+++++.++......+..+|+.+|+.+....
T Consensus 682 ~g~~i~l~~~~~~~~~~l~~~l~~~G~~v~~~~ 714 (924)
T PRK10841 682 QGKRCWLAVRNASLEQFLETLLQRSGIQVQRYE 714 (924)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCeEEEcc
Confidence 356899999999999999999999999987665
No 215
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=67.85 E-value=78 Score=28.96 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=59.9
Q ss_pred CccEEEEEeCC----HHHHHHHHHHHhhc-CCE--EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC----
Q 048660 92 KELHVLAVDDS----YVDRKLIERLLQIS-SCK--VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG---- 160 (213)
Q Consensus 92 ~~~~ILvVdD~----~~~~~~l~~~L~~~-g~~--v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~---- 160 (213)
.+..++++|.. ....+.+..+-+++ +.. +..+.+.++|.+.... ..|.|-+-+. |+
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a------------Gad~i~vg~g-~gs~~~ 305 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA------------GADAVKVGIG-PGSICT 305 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc------------CCCEEEECCC-CCcccc
Confidence 45678888854 22333444444444 322 3455677777777632 3455543221 11
Q ss_pred --------CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 161 --------MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 161 --------~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
..-++++..+++......+|||+=.+-....+..+|+.+||+..+
T Consensus 306 ~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~ 358 (486)
T PRK05567 306 TRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVM 358 (486)
T ss_pred ceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEE
Confidence 123455555554322346898888888999999999999998864
No 216
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=66.88 E-value=41 Score=27.55 Aligned_cols=81 Identities=10% Similarity=0.076 Sum_probs=58.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHH-HHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYE-LLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e-~~~~ir 171 (213)
+-.|||-.--.-+...|.+.+.+.|-.|..+.--++.|+.... ..-.+.-.++|+ .+.++.+ +..+|.
T Consensus 5 gnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~---------~~p~~~t~v~Dv--~d~~~~~~lvewLk 73 (245)
T COG3967 5 GNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKA---------ENPEIHTEVCDV--ADRDSRRELVEWLK 73 (245)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHh---------cCcchheeeecc--cchhhHHHHHHHHH
Confidence 4578888888888888888888899999998888888876632 111233456665 5666554 888898
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+. +|.+-|++--+
T Consensus 74 k~--~P~lNvliNNA 86 (245)
T COG3967 74 KE--YPNLNVLINNA 86 (245)
T ss_pred hh--CCchheeeecc
Confidence 87 67888877544
No 217
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=66.56 E-value=67 Score=26.05 Aligned_cols=67 Identities=24% Similarity=0.303 Sum_probs=49.1
Q ss_pred EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC-------CCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHH
Q 048660 122 AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM-------PGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQID 194 (213)
Q Consensus 122 ~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m-------p~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~ 194 (213)
.+.+-+++.+..+ ..+|.|.+.--- +...|++.++++++. ..+|++++.+-+ .+...
T Consensus 110 S~h~~eea~~A~~------------~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~---~~iP~vAIGGi~-~~nv~ 173 (211)
T COG0352 110 STHDLEEALEAEE------------LGADYVGLGPIFPTSTKPDAPPLGLEGLREIREL---VNIPVVAIGGIN-LENVP 173 (211)
T ss_pred ecCCHHHHHHHHh------------cCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHh---CCCCEEEEcCCC-HHHHH
Confidence 4557778877652 237888776533 345699999999985 349999888765 67788
Q ss_pred HHHHcCCCee
Q 048660 195 SCLEEGAEEY 204 (213)
Q Consensus 195 ~~~~~G~~~~ 204 (213)
...++|+++.
T Consensus 174 ~v~~~Ga~gV 183 (211)
T COG0352 174 EVLEAGADGV 183 (211)
T ss_pred HHHHhCCCeE
Confidence 8999999875
No 218
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=66.27 E-value=40 Score=29.48 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=40.5
Q ss_pred ceeEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 148 KVNLIITDYTMPGM-TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 148 ~~dlil~D~~mp~~-~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
.+|+|++|...... .-.+.++.||+. .|+++|| ...-...+....++.+|+|..
T Consensus 122 g~D~iviD~AhGhs~~~i~~ik~ik~~--~P~~~vI-aGNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 122 ALNFICIDVANGYSEHFVQFVAKAREA--WPDKTIC-AGNVVTGEMVEELILSGADIV 176 (346)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHHh--CCCCcEE-EecccCHHHHHHHHHcCCCEE
Confidence 58999999977653 356789999986 5676644 444556778888999999875
No 219
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=66.07 E-value=80 Score=26.58 Aligned_cols=103 Identities=13% Similarity=0.106 Sum_probs=53.9
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC--HHHHH
Q 048660 93 ELHVLAVDDSYV---DRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT--GYELL 167 (213)
Q Consensus 93 ~~~ILvVdD~~~---~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~--G~e~~ 167 (213)
+.++.+++-+.. ....++.+.+..|+.+..+.+..+..+.++... ....+|+||+|. |+.+ .-+.+
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~-------~~~~~D~ViIDt--~Gr~~~~~~~l 173 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK-------EEARVDYILIDT--AGKNYRASETV 173 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHH-------hcCCCCEEEEEC--CCCCcCCHHHH
Confidence 356777765533 344555666667888887777644433332110 223689999998 3332 23344
Q ss_pred HHHHhcC--CCCCCcEEEEecCCCHHHHH----HHHHcCCCee
Q 048660 168 KKIKESS--VFREVPVVIMSSEDVLTQID----SCLEEGAEEY 204 (213)
Q Consensus 168 ~~ir~~~--~~~~~pII~lt~~~~~~~~~----~~~~~G~~~~ 204 (213)
+++++.. ..+...++++++.....+.. .+...+.+++
T Consensus 174 ~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~ 216 (270)
T PRK06731 174 EEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGI 216 (270)
T ss_pred HHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEE
Confidence 4444311 12334466777665443332 2233455554
No 220
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=66.05 E-value=43 Score=23.52 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHcCCCeeeeCCCCC
Q 048660 188 DVLTQIDSCLEEGAEEYIVKPVKL 211 (213)
Q Consensus 188 ~~~~~~~~~~~~G~~~~L~KP~~~ 211 (213)
...+....+++.|.+-|+-||+..
T Consensus 74 ~h~~~~~~~l~~g~~v~~EKP~~~ 97 (120)
T PF01408_consen 74 SHAEIAKKALEAGKHVLVEKPLAL 97 (120)
T ss_dssp GHHHHHHHHHHTTSEEEEESSSSS
T ss_pred chHHHHHHHHHcCCEEEEEcCCcC
Confidence 344567778888887788888754
No 221
>PRK04457 spermidine synthase; Provisional
Probab=65.50 E-value=79 Score=26.30 Aligned_cols=71 Identities=7% Similarity=0.051 Sum_probs=47.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcC--CEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-----CC
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISS--CKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-----MT 162 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g--~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-----~~ 162 (213)
....+|.+||=++.+.+..+..+...+ .++. ...|+.+.+... ...||+|++|..-+. ..
T Consensus 88 ~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~------------~~~yD~I~~D~~~~~~~~~~l~ 155 (262)
T PRK04457 88 LPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH------------RHSTDVILVDGFDGEGIIDALC 155 (262)
T ss_pred CCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC------------CCCCCEEEEeCCCCCCCccccC
Confidence 345789999999999999998876432 3343 446776666532 247999999973222 12
Q ss_pred HHHHHHHHHhc
Q 048660 163 GYELLKKIKES 173 (213)
Q Consensus 163 G~e~~~~ir~~ 173 (213)
..++++.+++.
T Consensus 156 t~efl~~~~~~ 166 (262)
T PRK04457 156 TQPFFDDCRNA 166 (262)
T ss_pred cHHHHHHHHHh
Confidence 35777777764
No 222
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=65.48 E-value=14 Score=31.53 Aligned_cols=42 Identities=26% Similarity=0.380 Sum_probs=34.8
Q ss_pred CHHHHHHHHHhcCCCCCCcEE--EEecCCCHHHHHHHHHcCCCeeee
Q 048660 162 TGYELLKKIKESSVFREVPVV--IMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII--~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.++++++++++. ..+||| +..+-..+++...++++|+++++.
T Consensus 190 ~~~elL~ei~~~---~~iPVV~~AeGGI~TPedaa~vme~GAdgVaV 233 (293)
T PRK04180 190 APYELVKEVAEL---GRLPVVNFAAGGIATPADAALMMQLGADGVFV 233 (293)
T ss_pred CCHHHHHHHHHh---CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEE
Confidence 578889999874 368998 777777999999999999998753
No 223
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=65.23 E-value=65 Score=25.21 Aligned_cols=57 Identities=23% Similarity=0.305 Sum_probs=35.0
Q ss_pred eeEEEEeCCCCCCCH-------HHHHHHHHhcC--CCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 149 VNLIITDYTMPGMTG-------YELLKKIKESS--VFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 149 ~dlil~D~~mp~~~G-------~e~~~~ir~~~--~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.|.++++...|+.+| .+.++++|+.. ..++.|+++.- .-+.+....+.+.|++.++.
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~G-GI~~env~~~~~~gad~iiv 193 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDG-GINLETIPLLAEAGADVLVA 193 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEEC-CCCHHHHHHHHHcCCCEEEE
Confidence 577777655555433 44555555431 02246765444 44568888999999998754
No 224
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=65.19 E-value=20 Score=32.91 Aligned_cols=56 Identities=16% Similarity=0.321 Sum_probs=40.2
Q ss_pred CceeEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 147 LKVNLIITDYTMPGM-TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 147 ~~~dlil~D~~mp~~-~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
...|+|.+|..-... ..++.+++||+. +++++|++ ..-.+.+....+.++|+|.+.
T Consensus 252 ag~d~i~id~a~G~s~~~~~~i~~ik~~--~~~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 252 AGVDVLVVDSSQGNSIYQIDMIKKLKSN--YPHVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred CCCCEEEEecCCCCchHHHHHHHHHHhh--CCCceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 357999999853322 246889999986 56677665 344556788999999998763
No 225
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=64.93 E-value=40 Score=28.36 Aligned_cols=71 Identities=18% Similarity=0.142 Sum_probs=46.9
Q ss_pred EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHH
Q 048660 119 KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLE 198 (213)
Q Consensus 119 ~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~ 198 (213)
..+.+.+.+++.+.++ ...|.|.+|-.-|. +--++.+.+++. .+++|+++. +.-+.+....+.+
T Consensus 186 IgVev~t~eea~~A~~------------~gaD~I~ld~~~p~-~l~~~~~~~~~~--~~~i~i~As-GGI~~~ni~~~~~ 249 (272)
T cd01573 186 IVVEVDSLEEALAAAE------------AGADILQLDKFSPE-ELAELVPKLRSL--APPVLLAAA-GGINIENAAAYAA 249 (272)
T ss_pred EEEEcCCHHHHHHHHH------------cCCCEEEECCCCHH-HHHHHHHHHhcc--CCCceEEEE-CCCCHHHHHHHHH
Confidence 3456788889888762 24689999954443 222345545543 346776654 4557788999999
Q ss_pred cCCCeee
Q 048660 199 EGAEEYI 205 (213)
Q Consensus 199 ~G~~~~L 205 (213)
.|++.+.
T Consensus 250 ~Gvd~I~ 256 (272)
T cd01573 250 AGADILV 256 (272)
T ss_pred cCCcEEE
Confidence 9998863
No 226
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=64.48 E-value=14 Score=30.43 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=29.8
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEecCCC------HHHHHHHHHcCCCeeeeC
Q 048660 162 TGYELLKKIKESSVFREVPVVIMSSEDV------LTQIDSCLEEGAEEYIVK 207 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~lt~~~~------~~~~~~~~~~G~~~~L~K 207 (213)
.+++.++.+|+. .++|+++++-.+. ......+.++|+++++.-
T Consensus 63 ~~~~~~~~vr~~---~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiip 111 (242)
T cd04724 63 DVLELVKEIRKK---NTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIP 111 (242)
T ss_pred HHHHHHHHHhhc---CCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEEC
Confidence 356677777764 2678887777443 556777888898887763
No 227
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=64.30 E-value=22 Score=31.25 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=38.6
Q ss_pred ceeEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 148 KVNLIITDYTMPGM-TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 148 ~~dlil~D~~mp~~-~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
..|+|++|...... .-.+.++.||+. .++++|| .-.-...+.....+++|+|...
T Consensus 120 gvD~ivID~a~g~s~~~~~~ik~ik~~--~~~~~vi-aGNV~T~e~a~~L~~aGad~vk 175 (352)
T PF00478_consen 120 GVDVIVIDSAHGHSEHVIDMIKKIKKK--FPDVPVI-AGNVVTYEGAKDLIDAGADAVK 175 (352)
T ss_dssp T-SEEEEE-SSTTSHHHHHHHHHHHHH--STTSEEE-EEEE-SHHHHHHHHHTT-SEEE
T ss_pred CCCEEEccccCccHHHHHHHHHHHHHh--CCCceEE-ecccCCHHHHHHHHHcCCCEEE
Confidence 56999999876543 356789999987 5678877 4445567788889999998764
No 228
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=64.00 E-value=1.2e+02 Score=27.90 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=24.9
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 177 REVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 177 ~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
..+|+|+=.+-....+..+|+.+||+.+.
T Consensus 343 ~~v~vIadGGi~~~~di~kAla~GA~~Vm 371 (495)
T PTZ00314 343 RGVPCIADGGIKNSGDICKALALGADCVM 371 (495)
T ss_pred cCCeEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 35888887788889999999999998864
No 229
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=63.86 E-value=66 Score=27.73 Aligned_cols=101 Identities=10% Similarity=-0.016 Sum_probs=57.5
Q ss_pred EEEEEeCCHHHHHHHHHH-------HhhcCC---EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC--CCC--
Q 048660 95 HVLAVDDSYVDRKLIERL-------LQISSC---KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT--MPG-- 160 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~-------L~~~g~---~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~--mp~-- 160 (213)
.|||-|++-...-.+... ++..++ ..+.+++.+++.+.+.-... .....|+|++|=. -|.
T Consensus 172 ~vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~------~~agaDiImLDnm~~~~~~~ 245 (308)
T PLN02716 172 MVMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSD------TKTSLTRVMLDNMVVPLENG 245 (308)
T ss_pred eEEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhccc------ccCCCCEEEeCCCccccccc
Confidence 377777664433222222 223333 34578899999998830000 0135799999943 121
Q ss_pred -CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 161 -MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 161 -~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
.+--++.+.++.. .....+-.|+.-+.+........|+|-.
T Consensus 246 ~~~~e~l~~av~~~---~~~~~lEaSGGIt~~ni~~yA~tGVD~I 287 (308)
T PLN02716 246 DVDVSMLKEAVELI---NGRFETEASGNVTLDTVHKIGQTGVTYI 287 (308)
T ss_pred CCCHHHHHHHHHhh---CCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 1333333333322 1223477899999999999999999653
No 230
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=63.85 E-value=19 Score=29.90 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=46.1
Q ss_pred CCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCC
Q 048660 146 ALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVK 210 (213)
Q Consensus 146 ~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~ 210 (213)
...||++++=--.|...|-.-+|++.+. ..+|.|++|........ .+++..-.+|+.-+.+
T Consensus 58 ~~~pDf~i~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~K~~-d~l~~~g~GYIivk~D 118 (277)
T PRK00994 58 EWKPDFVIVISPNPAAPGPKKAREILKA---AGIPCIVIGDAPGKKVK-DAMEEQGLGYIIVKAD 118 (277)
T ss_pred hhCCCEEEEECCCCCCCCchHHHHHHHh---cCCCEEEEcCCCccchH-HHHHhcCCcEEEEecC
Confidence 4578999987777778898888888874 47899999988777655 5666666688765554
No 231
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=63.72 E-value=87 Score=26.15 Aligned_cols=78 Identities=12% Similarity=-0.007 Sum_probs=48.7
Q ss_pred EeCCHHH---HHHHHHHHhhcCCEEEEE-------cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 99 VDDSYVD---RKLIERLLQISSCKVTAV-------ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 99 VdD~~~~---~~~l~~~L~~~g~~v~~a-------~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
.+|++.- ...++..+++.|.++... .|....+..+ ....||+|++-.. ..++..+++
T Consensus 144 ~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l-----------~~~~pd~v~~~~~--~~~~~~~~~ 210 (312)
T cd06346 144 YINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAA-----------AAGGPDALVVIGY--PETGSGILR 210 (312)
T ss_pred EccCchhhHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHH-----------HhcCCCEEEEecc--cchHHHHHH
Confidence 3454433 345566777888876542 3566677776 3457899987643 337888899
Q ss_pred HHHhcCCCCCCcEEEEecCCCHH
Q 048660 169 KIKESSVFREVPVVIMSSEDVLT 191 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~~~~ 191 (213)
.+++.+ -..+++..++.....
T Consensus 211 ~~~~~G--~~~~~~~~~~~~~~~ 231 (312)
T cd06346 211 SAYEQG--LFDKFLLTDGMKSDS 231 (312)
T ss_pred HHHHcC--CCCceEeeccccChH
Confidence 998764 256666654444433
No 232
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=63.69 E-value=67 Score=25.76 Aligned_cols=54 Identities=28% Similarity=0.438 Sum_probs=40.6
Q ss_pred eEEEEeCCCCCC---CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 150 NLIITDYTMPGM---TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 150 dlil~D~~mp~~---~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.++++|+..-++ ..+++++.+++. .++|+++-.+-.+.++..++++.|+++++.
T Consensus 162 ~iii~~~~~~g~~~g~~~~~i~~i~~~---~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 162 AIIYTDISRDGTLSGPNFELYKELAAA---TGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred EEEEEeecCCCccCCCCHHHHHHHHHh---cCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 366777644321 236788888864 378999999888899999999999998754
No 233
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=63.69 E-value=75 Score=26.92 Aligned_cols=98 Identities=13% Similarity=0.194 Sum_probs=56.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEE-----EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC---CC----
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVT-----AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT---MP---- 159 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~-----~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~---mp---- 159 (213)
..-+||=+|-|+.-.+..-..-+++|..+. .-+-.+...+++ ...+||++++-=+ .-
T Consensus 103 ~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll-----------~~~~PDIlViTGHD~~~K~~~d 171 (283)
T TIGR02855 103 MPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLI-----------EEVRPDILVITGHDAYSKNKGN 171 (283)
T ss_pred CCCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHH-----------HHhCCCEEEEeCchhhhcCCCC
Confidence 356999999999888777777777775443 223333444555 5568998886321 11
Q ss_pred --CCC----H---HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCC
Q 048660 160 --GMT----G---YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAE 202 (213)
Q Consensus 160 --~~~----G---~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~ 202 (213)
+++ . .++.+..|+-.+..+ -.|+.++-+ ....+..+++||+
T Consensus 172 ~~dl~~YrnSkyFVeaVk~aR~y~~~~D-~LVIFAGAC-QS~yEall~AGAN 221 (283)
T TIGR02855 172 YMDLNAYRHSKYFVETVREARKYVPSLD-QLVIFAGAC-QSHFESLIRAGAN 221 (283)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcCCCcc-cEEEEcchh-HHHHHHHHHcCcc
Confidence 111 1 133444444322222 244455544 4567888999985
No 234
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=63.36 E-value=61 Score=26.88 Aligned_cols=53 Identities=21% Similarity=0.452 Sum_probs=40.7
Q ss_pred eEEEEeCCCCC-CC--HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHH-HcCCCeee
Q 048660 150 NLIITDYTMPG-MT--GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCL-EEGAEEYI 205 (213)
Q Consensus 150 dlil~D~~mp~-~~--G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~-~~G~~~~L 205 (213)
.+++.|+.--+ +. -+++++++++. ..+|+|+-.+-.+.++..+++ ..|+++.+
T Consensus 168 ~ii~~~i~~~G~~~G~d~~~i~~~~~~---~~ipvIasGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 168 EILLNSIDRDGTMKGYDLELLKSFRNA---LKIPLIALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred EEEEEccCCCCCcCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHHCCCCEEE
Confidence 48888875432 22 46678888864 579999999999999999998 79999864
No 235
>PLN02591 tryptophan synthase
Probab=63.25 E-value=88 Score=26.05 Aligned_cols=101 Identities=13% Similarity=0.118 Sum_probs=61.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEE-E-cCH-HHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC------CCHHH
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTA-V-ESG-TRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG------MTGYE 165 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~-a-~~g-~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~------~~G~e 165 (213)
-++|.|-...-...+...+++.|..... + .+. .+-++.+.... ..|=-++.-..-.+ .+-.+
T Consensus 109 GviipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~---------~gFIY~Vs~~GvTG~~~~~~~~~~~ 179 (250)
T PLN02591 109 GLVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS---------EGFVYLVSSTGVTGARASVSGRVES 179 (250)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC---------CCcEEEeeCCCCcCCCcCCchhHHH
Confidence 4777777777777788888888875543 3 232 33444443211 11211221111111 12345
Q ss_pred HHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeC
Q 048660 166 LLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVK 207 (213)
Q Consensus 166 ~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~K 207 (213)
.++++|+. .++|+++=.+-.+.++..++.+.|+|+.+.-
T Consensus 180 ~i~~vk~~---~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 180 LLQELKEV---TDKPVAVGFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred HHHHHHhc---CCCceEEeCCCCCHHHHHHHHhcCCCEEEEC
Confidence 68888873 5889998777778999999999999998753
No 236
>PLN02775 Probable dihydrodipicolinate reductase
Probab=63.04 E-value=96 Score=26.45 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=27.2
Q ss_pred CceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHH
Q 048660 147 LKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLE 198 (213)
Q Consensus 147 ~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~ 198 (213)
..||+|++|+..|.. ..+.++...+. .+|+|+=|.--+.+...+..+
T Consensus 78 ~~~~~VvIDFT~P~a-~~~~~~~~~~~----g~~~VvGTTG~~~e~l~~~~~ 124 (286)
T PLN02775 78 EYPNLIVVDYTLPDA-VNDNAELYCKN----GLPFVMGTTGGDRDRLLKDVE 124 (286)
T ss_pred cCCCEEEEECCChHH-HHHHHHHHHHC----CCCEEEECCCCCHHHHHHHHh
Confidence 368999999999983 34444444443 456555544444444444433
No 237
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=62.95 E-value=23 Score=32.40 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=40.8
Q ss_pred CceeEEEEeCCCC-CCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 147 LKVNLIITDYTMP-GMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 147 ~~~dlil~D~~mp-~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
...|.|.+|..-. ...-.+++++||+. .++++||+ ..-...+....+.++|+|..-
T Consensus 238 aGvd~i~~D~a~~~~~~~~~~i~~ik~~--~p~~~v~a-gnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 238 AGVDVLVVDTAHGHQEKMLEALRAVRAL--DPGVPIVA-GNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred hCCCEEEEeccCCccHHHHHHHHHHHHH--CCCCeEEe-eccCCHHHHHHHHHcCCCEEE
Confidence 3578899998664 45677889999986 56766653 234456778889999998753
No 238
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=62.52 E-value=23 Score=24.81 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=28.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM 158 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m 158 (213)
+.+.=.|......|.++|+..|+.|..... + ....-|++|+|...
T Consensus 2 cwL~irNa~Le~yL~~lL~~~G~~v~~y~~-q-----------------~~~~~DvlItD~~~ 46 (92)
T PF09456_consen 2 CWLAIRNAYLESYLQRLLSYHGFQVQRYEG-Q-----------------QPDADDVLITDYEP 46 (92)
T ss_dssp EEEE---HHHHHHHHHHHCTTTEEEEE-SS----------------------TT-EEEEESS-
T ss_pred EEEEehhHHHHHHHHHHHHHCCcEEEEecC-C-----------------CCCCCcEEEECCCc
Confidence 445556778889999999999999988773 1 12246899999754
No 239
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=62.46 E-value=90 Score=25.95 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=53.9
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEE-EEc--CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC------CCHHHH
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVT-AVE--SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG------MTGYEL 166 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~-~a~--~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~------~~G~e~ 166 (213)
|++.|-.......+...+++.|.... .++ +..+-+..+.. ....|..++.=..--+ -+-.+.
T Consensus 119 viipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~---------~~~gfiy~vs~~G~TG~~~~~~~~~~~~ 189 (256)
T TIGR00262 119 VLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAE---------KSQGFVYLVSRAGVTGARNRAASALNEL 189 (256)
T ss_pred EEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHH---------hCCCCEEEEECCCCCCCcccCChhHHHH
Confidence 44444444445556666677787543 222 22334443322 1112444433111111 124667
Q ss_pred HHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 167 LKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 167 ~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
++++|+. .+.||++=-+-.+.++..++.+.|+|+++.
T Consensus 190 i~~lr~~---~~~pi~vgfGI~~~e~~~~~~~~GADgvVv 226 (256)
T TIGR00262 190 VKRLKAY---SAKPVLVGFGISKPEQVKQAIDAGADGVIV 226 (256)
T ss_pred HHHHHhh---cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 8888874 356866544445688999999999999875
No 240
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=62.32 E-value=69 Score=26.85 Aligned_cols=99 Identities=15% Similarity=0.070 Sum_probs=61.4
Q ss_pred hcccCCCcchhhhhhhhcCCccEEEEEeCCHHHHHHHHHHHhhcCCEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeE
Q 048660 73 KETNRGFPFWAMATVAECSKELHVLAVDDSYVDRKLIERLLQISSCKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNL 151 (213)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dl 151 (213)
-+.+.|+.+....-...-...-+|.-+|-.+.+.+...+-|+..|+.- +....+ +..+.. ....+|.
T Consensus 99 lEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~-Dv~~~~-----------~~~~vDa 166 (256)
T COG2519 99 LEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLG-DVREGI-----------DEEDVDA 166 (256)
T ss_pred EEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEec-cccccc-----------cccccCE
Confidence 344555554443333334455689999999999999999998876521 222221 222222 3448999
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCC
Q 048660 152 IITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSED 188 (213)
Q Consensus 152 il~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~ 188 (213)
|++|+. +-+++++.+.+.- .+...+++++...
T Consensus 167 v~LDmp----~PW~~le~~~~~L-kpgg~~~~y~P~v 198 (256)
T COG2519 167 VFLDLP----DPWNVLEHVSDAL-KPGGVVVVYSPTV 198 (256)
T ss_pred EEEcCC----ChHHHHHHHHHHh-CCCcEEEEEcCCH
Confidence 999974 3456666666543 4567778887764
No 241
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=62.31 E-value=46 Score=28.72 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=39.8
Q ss_pred CceeEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 147 LKVNLIITDYTMPGM-TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 147 ~~~dlil~D~~mp~~-~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
..+|+|.+|...... .-.++++.||+. .++++|++ ..-.+.+....+.++|+|...
T Consensus 105 agv~~I~vd~~~G~~~~~~~~i~~ik~~--~p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~ 161 (325)
T cd00381 105 AGVDVIVIDSAHGHSVYVIEMIKFIKKK--YPNVDVIA-GNVVTAEAARDLIDAGADGVK 161 (325)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHHHHH--CCCceEEE-CCCCCHHHHHHHHhcCCCEEE
Confidence 357899998854332 346788888876 34677765 344567788999999998765
No 242
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=62.24 E-value=66 Score=27.36 Aligned_cols=98 Identities=12% Similarity=0.168 Sum_probs=56.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEE-EEcC----HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC---C-----
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVT-AVES----GTRALQYLGLDGEQSNVGFDALKVNLIITDYT---M----- 158 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~-~a~~----g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~---m----- 158 (213)
..-+||=+|-|+.-.+..-..-+++|..+. .+-. .+.-.+.+ ...+||++++-=+ .
T Consensus 104 ~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll-----------~~~~PDIlViTGHD~~~K~~~d 172 (287)
T PF05582_consen 104 RPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLL-----------EEYRPDILVITGHDGYLKNKKD 172 (287)
T ss_pred CCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHH-----------HHcCCCEEEEeCchhhhcCCCC
Confidence 356999999999888887777788876443 2222 22233444 5568998886321 1
Q ss_pred -CCCC----H---HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCC
Q 048660 159 -PGMT----G---YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAE 202 (213)
Q Consensus 159 -p~~~----G---~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~ 202 (213)
-+++ . .++.+..|+-.+..+- .|++++-+ ....+..+++||+
T Consensus 173 ~~dl~~YrnSkyFVeaV~~aR~~ep~~D~-LVIfAGAC-QS~fEall~AGAN 222 (287)
T PF05582_consen 173 YSDLNNYRNSKYFVEAVKEARKYEPNLDD-LVIFAGAC-QSHFEALLEAGAN 222 (287)
T ss_pred hhhhhhhhccHHHHHHHHHHHhcCCCccc-EEEEcchh-HHHHHHHHHcCcc
Confidence 1111 1 2344555543222232 34445444 4567888999985
No 243
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=62.01 E-value=24 Score=26.07 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHhcCCCCCCcE--EEEecCCCHHHHHHHHHcCCCeeeeC
Q 048660 159 PGMTGYELLKKIKESSVFREVPV--VIMSSEDVLTQIDSCLEEGAEEYIVK 207 (213)
Q Consensus 159 p~~~G~e~~~~ir~~~~~~~~pI--I~lt~~~~~~~~~~~~~~G~~~~L~K 207 (213)
-...+.+++-.-|-.. .+.+.| +.+|+..+.+.+.+|++.|+|+.+.-
T Consensus 11 csygaaDlag~~rmqy-p~~vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~ 60 (132)
T COG1908 11 CSYGAADLAGTSRMQY-PPNVRIIRVMCSGRVNPEFVLKALRKGADGVLVA 60 (132)
T ss_pred ccccchhhhccccccC-CCceEEEEeeccCccCHHHHHHHHHcCCCeEEEe
Confidence 3334445544455433 234444 45799999999999999999998864
No 244
>PRK01581 speE spermidine synthase; Validated
Probab=61.77 E-value=1.2e+02 Score=27.00 Aligned_cols=70 Identities=24% Similarity=0.201 Sum_probs=43.8
Q ss_pred CccEEEEEeCCHHHHHHHHHH--Hh---hc---CCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC-
Q 048660 92 KELHVLAVDDSYVDRKLIERL--LQ---IS---SCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM- 161 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~--L~---~~---g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~- 161 (213)
...+|.+||=++.+.+..+.. |. +. +-++. ...|+.+.+... ...||+|++|+.-|..
T Consensus 173 ~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~------------~~~YDVIIvDl~DP~~~ 240 (374)
T PRK01581 173 TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP------------SSLYDVIIIDFPDPATE 240 (374)
T ss_pred CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc------------CCCccEEEEcCCCcccc
Confidence 346899999999888887762 22 11 22443 457776666432 3479999999754432
Q ss_pred -----CHHHHHHHHHhc
Q 048660 162 -----TGYELLKKIKES 173 (213)
Q Consensus 162 -----~G~e~~~~ir~~ 173 (213)
-..++.+.+++.
T Consensus 241 ~~~~LyT~EFy~~~~~~ 257 (374)
T PRK01581 241 LLSTLYTSELFARIATF 257 (374)
T ss_pred chhhhhHHHHHHHHHHh
Confidence 134566777664
No 245
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.61 E-value=56 Score=25.77 Aligned_cols=66 Identities=11% Similarity=0.242 Sum_probs=45.8
Q ss_pred EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCC
Q 048660 123 VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAE 202 (213)
Q Consensus 123 a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~ 202 (213)
+.+..|+.+... ...|.|-+ +--...-|.+.++.++.. .+++|++++.+- +.+....++++|++
T Consensus 112 ~~t~~e~~~A~~------------~Gadyv~~-Fpt~~~~G~~~l~~~~~~--~~~ipvvaiGGI-~~~n~~~~l~aGa~ 175 (187)
T PRK07455 112 ALTPTEIVTAWQ------------AGASCVKV-FPVQAVGGADYIKSLQGP--LGHIPLIPTGGV-TLENAQAFIQAGAI 175 (187)
T ss_pred cCCHHHHHHHHH------------CCCCEEEE-CcCCcccCHHHHHHHHhh--CCCCcEEEeCCC-CHHHHHHHHHCCCe
Confidence 677788777652 13455544 222224589999999975 567997766554 57889999999998
Q ss_pred ee
Q 048660 203 EY 204 (213)
Q Consensus 203 ~~ 204 (213)
.+
T Consensus 176 ~v 177 (187)
T PRK07455 176 AV 177 (187)
T ss_pred EE
Confidence 75
No 246
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=61.59 E-value=73 Score=24.61 Aligned_cols=79 Identities=9% Similarity=0.136 Sum_probs=53.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhc--CCEEEEEcCH-------HHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQIS--SCKVTAVESG-------TRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT 162 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~--g~~v~~a~~g-------~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~ 162 (213)
.+.+|.++...+...+.+...|++. |..+..+.++ ++.++.+ ....+|+|++-+.+|...
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I-----------~~~~pdiv~vglG~PkQE 115 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRI-----------NASGPDIVFVGLGAPKQE 115 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHH-----------HHcCCCEEEEECCCCHHH
Confidence 4579999999998888888888765 5566654443 3344455 445799999999888744
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEec
Q 048660 163 GYELLKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~ 186 (213)
.++...++.. ..++++..+
T Consensus 116 --~~~~~~~~~l---~~~v~i~vG 134 (172)
T PF03808_consen 116 --RWIARHRQRL---PAGVIIGVG 134 (172)
T ss_pred --HHHHHHHHHC---CCCEEEEEC
Confidence 4566666642 334454444
No 247
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=61.51 E-value=13 Score=30.18 Aligned_cols=48 Identities=19% Similarity=0.323 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecC------CCHHHHHHHHHcCCCeeeeCCCCCCC
Q 048660 164 YELLKKIKESSVFREVPVVIMSSE------DVLTQIDSCLEEGAEEYIVKPVKLSD 213 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~------~~~~~~~~~~~~G~~~~L~KP~~~~e 213 (213)
++.+++.|.. .-.+|||+++-+ ......+.+-++|+++|+.-.+.+||
T Consensus 83 ~emvk~ar~~--gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEE 136 (268)
T KOG4175|consen 83 IEMVKEARPQ--GVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEE 136 (268)
T ss_pred HHHHHHhccc--CcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHH
Confidence 3334444432 357899998875 44567888999999999987666553
No 248
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=61.29 E-value=87 Score=25.35 Aligned_cols=46 Identities=22% Similarity=0.308 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCC
Q 048660 160 GMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209 (213)
Q Consensus 160 ~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~ 209 (213)
.-++++.++.+++. .+++ +|..-.-.+.++...+.++|+ +|+.-|.
T Consensus 50 ~~~~~~~I~~l~~~--~p~~-~IGAGTVl~~~~a~~a~~aGA-~FivsP~ 95 (212)
T PRK05718 50 TPAALEAIRLIAKE--VPEA-LIGAGTVLNPEQLAQAIEAGA-QFIVSPG 95 (212)
T ss_pred CccHHHHHHHHHHH--CCCC-EEEEeeccCHHHHHHHHHcCC-CEEECCC
Confidence 33688888888875 3442 333333445677888888888 4555553
No 249
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=61.27 E-value=35 Score=28.01 Aligned_cols=90 Identities=18% Similarity=0.289 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CCHH-HHHHHHHhcCCC
Q 048660 102 SYVDRKLIERLLQISSCKVTAVE---SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MTGY-ELLKKIKESSVF 176 (213)
Q Consensus 102 ~~~~~~~l~~~L~~~g~~v~~a~---~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~G~-e~~~~ir~~~~~ 176 (213)
+..=.+.+..+|+..||+++-.. ..++.++.. .+.+||+|-+..-|-. |.+. ++.+.|++.+
T Consensus 117 HdIGk~iV~~ml~~aGfevidLG~dvP~e~fve~a-----------~e~k~d~v~~SalMTttm~~~~~viE~L~eeG-- 183 (227)
T COG5012 117 HDIGKNIVATMLEAAGFEVIDLGRDVPVEEFVEKA-----------KELKPDLVSMSALMTTTMIGMKDVIELLKEEG-- 183 (227)
T ss_pred HHHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHH-----------HHcCCcEEechHHHHHHHHHHHHHHHHHHHcC--
Confidence 44455677888899999887543 356667766 4557999998877743 4444 4778888764
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 177 REVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 177 ~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
-+-+++++.+.... ...-+-+.|+|.|-
T Consensus 184 iRd~v~v~vGGApv-tq~~a~~iGAD~~~ 211 (227)
T COG5012 184 IRDKVIVMVGGAPV-TQDWADKIGADAYA 211 (227)
T ss_pred CccCeEEeecCccc-cHHHHHHhCCCccC
Confidence 34466666444322 22334577888763
No 250
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=61.24 E-value=52 Score=27.13 Aligned_cols=39 Identities=21% Similarity=0.373 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcC-CCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEG-AEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G-~~~~L 205 (213)
+++++++++. .++|+|+..+-.+.++..+++..| +++.+
T Consensus 188 ~~~~~~i~~~---~~ipvia~GGi~s~~di~~~~~~g~~dgv~ 227 (254)
T TIGR00735 188 LELTKAVSEA---VKIPVIASGGAGKPEHFYEAFTKGKADAAL 227 (254)
T ss_pred HHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCcceee
Confidence 6788888875 478999999999999999999988 88854
No 251
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=60.59 E-value=56 Score=24.31 Aligned_cols=86 Identities=8% Similarity=0.054 Sum_probs=46.6
Q ss_pred EEEEeCCHHHH--HHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 96 VLAVDDSYVDR--KLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 96 ILvVdD~~~~~--~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
|+++.|+-... ..+...+-..-..-....+..++++.+..... ....+|+|++-+.--+..-.+-++.|.+.
T Consensus 2 v~~~GDSv~~~~~~~~~~~~p~~~i~a~~g~~~~~~~~~l~~~~~------~~~~~d~vvi~lGtNd~~~~~nl~~ii~~ 75 (150)
T cd01840 2 ITAIGDSVMLDSSPALQEIFPNIQIDAKVGRQMSEAPDLIRQLKD------SGKLRKTVVIGLGTNGPFTKDQLDELLDA 75 (150)
T ss_pred eeEEeehHHHchHHHHHHHCCCCEEEeeecccHHHHHHHHHHHHH------cCCCCCeEEEEecCCCCCCHHHHHHHHHH
Confidence 67778876655 34444443322222334556667766642211 22467899887766554434444455443
Q ss_pred CCCCCCcEEEEecCC
Q 048660 174 SVFREVPVVIMSSED 188 (213)
Q Consensus 174 ~~~~~~pII~lt~~~ 188 (213)
- .+..+|++++...
T Consensus 76 ~-~~~~~ivlv~~~~ 89 (150)
T cd01840 76 L-GPDRQVYLVNPHV 89 (150)
T ss_pred c-CCCCEEEEEECCC
Confidence 2 2347787777653
No 252
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=60.53 E-value=1.2e+02 Score=26.91 Aligned_cols=102 Identities=14% Similarity=0.074 Sum_probs=57.8
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC-CCCHH---
Q 048660 92 KELHVLAVDDSYV---DRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP-GMTGY--- 164 (213)
Q Consensus 92 ~~~~ILvVdD~~~---~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp-~~~G~--- 164 (213)
.+.+|.+|.-|.. ....++.+-...|..+..+.+..+....+.. ...+|+||+|..-- ..+..
T Consensus 205 ~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~----------~~~~DlVLIDTaGr~~~~~~~l~ 274 (388)
T PRK12723 205 KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ----------SKDFDLVLVDTIGKSPKDFMKLA 274 (388)
T ss_pred CCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH----------hCCCCEEEEcCCCCCccCHHHHH
Confidence 3568888887753 2233444455567777777777666555532 24689999998411 12332
Q ss_pred HHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHH----cCCCee
Q 048660 165 ELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLE----EGAEEY 204 (213)
Q Consensus 165 e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~----~G~~~~ 204 (213)
++.+.+.... .+.-.++++++.....+..+.++ .|.+++
T Consensus 275 el~~~l~~~~-~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~ 317 (388)
T PRK12723 275 EMKELLNACG-RDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTV 317 (388)
T ss_pred HHHHHHHhcC-CCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEE
Confidence 2222223221 12246788888877766655543 345554
No 253
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=60.41 E-value=99 Score=26.04 Aligned_cols=86 Identities=20% Similarity=0.194 Sum_probs=55.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHH-HHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYE-LLKKI 170 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e-~~~~i 170 (213)
...++||-.-..-+...+.+.|.+.||++..+.--++-|+.+....+.. .....+++-+|+.-| +..+ +...+
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~----~~v~v~vi~~DLs~~--~~~~~l~~~l 78 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDK----TGVEVEVIPADLSDP--EALERLEDEL 78 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHh----hCceEEEEECcCCCh--hHHHHHHHHH
Confidence 3568999999999999999999999999987777777666665432210 112345666666444 4444 45556
Q ss_pred HhcCCCCCCcEEEEe
Q 048660 171 KESSVFREVPVVIMS 185 (213)
Q Consensus 171 r~~~~~~~~pII~lt 185 (213)
++. ...+-+++-.
T Consensus 79 ~~~--~~~IdvLVNN 91 (265)
T COG0300 79 KER--GGPIDVLVNN 91 (265)
T ss_pred Hhc--CCcccEEEEC
Confidence 654 2345555543
No 254
>PRK07695 transcriptional regulator TenI; Provisional
Probab=60.38 E-value=64 Score=25.43 Aligned_cols=53 Identities=17% Similarity=0.316 Sum_probs=37.7
Q ss_pred ceeEEEEeCCCCC-------CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 148 KVNLIITDYTMPG-------MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 148 ~~dlil~D~~mp~-------~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
..|.+++.-..|. ..|++.++.+++. -++||+++.+- +.+....+++.|++++
T Consensus 115 Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~---~~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 115 GADYVVYGHVFPTDCKKGVPARGLEELSDIARA---LSIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 4567766532221 2367888888764 36899988777 7888999999999876
No 255
>COG3684 LacD Tagatose-1,6-bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=60.00 E-value=24 Score=29.72 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=39.8
Q ss_pred EEeCCCCC---CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHH----HHHHHHcCCCeeee
Q 048660 153 ITDYTMPG---MTGYELLKKIKESSVFREVPVVIMSSEDVLTQ----IDSCLEEGAEEYIV 206 (213)
Q Consensus 153 l~D~~mp~---~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~----~~~~~~~G~~~~L~ 206 (213)
++-+.||. ..--++++.+++.....++|.|.+|+..+... ..-++++|++++|.
T Consensus 202 vlKvevPvyveGe~~ea~~~f~~~~~~~~lP~i~LSAGV~~klF~~tv~fA~eaGAsGvL~ 262 (306)
T COG3684 202 VLKVEVPVYVEGEQEEAAAAFQRQNDHINLPWIYLSAGVSAKLFQRTVRFAMEAGASGVLA 262 (306)
T ss_pred eEEeecceeccCccHHHHHHHHHhhcCCCCCeEEEecCccHHHhHHHHHHHHHcCCceeEe
Confidence 44555665 23457888888766677999999999876654 45678999999985
No 256
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=59.72 E-value=66 Score=28.21 Aligned_cols=64 Identities=13% Similarity=0.135 Sum_probs=41.3
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHhhcCCEEEEEc---------CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC
Q 048660 94 LHVLAVDDSYV-----DRKLIERLLQISSCKVTAVE---------SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP 159 (213)
Q Consensus 94 ~~ILvVdD~~~-----~~~~l~~~L~~~g~~v~~a~---------~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp 159 (213)
.|+|||-|... ..+.+...|++.|..+.... +..++.+.+ +...+|+|| ...
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~D~Ii---avG 91 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALA-----------REEGCDFVV---GLG 91 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHH-----------HHcCCCEEE---EeC
Confidence 48899988654 33567777887787665543 233444554 345789888 346
Q ss_pred CCCHHHHHHHHH
Q 048660 160 GMTGYELLKKIK 171 (213)
Q Consensus 160 ~~~G~e~~~~ir 171 (213)
+.+.+++++.+.
T Consensus 92 GGS~iD~aK~ia 103 (380)
T cd08185 92 GGSSMDTAKAIA 103 (380)
T ss_pred CccHHHHHHHHH
Confidence 777777777664
No 257
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=59.36 E-value=31 Score=26.01 Aligned_cols=34 Identities=18% Similarity=0.259 Sum_probs=22.4
Q ss_pred CceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecC
Q 048660 147 LKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSE 187 (213)
Q Consensus 147 ~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~ 187 (213)
..||+||+|. ++.. ......++. .+..+|++|..
T Consensus 90 ~~~D~iiIDt--aG~~-~~~~~~~~~----Ad~~ivv~tpe 123 (148)
T cd03114 90 AGFDVIIVET--VGVG-QSEVDIASM----ADTTVVVMAPG 123 (148)
T ss_pred cCCCEEEEEC--CccC-hhhhhHHHh----CCEEEEEECCC
Confidence 4799999999 6654 333445553 35677777776
No 258
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=58.94 E-value=89 Score=26.45 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=48.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC--HHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT--GYELLKKI 170 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~--G~e~~~~i 170 (213)
...+++.||-...+..+..+--.....-..-.|..+....+.... ....-=.++.|..||..+ |..+++..
T Consensus 25 ~~d~i~~EDTR~t~kLL~~~~I~~~~~~~~~hn~~~~~~~l~~~l-------~~g~~valvSDAG~P~ISDPG~~LV~~~ 97 (276)
T TIGR00096 25 CVDLFAEEDTRTSKLLLHLGIIATPKAFHIDNEFQEKQNLLAAKL-------EIGNNIAVSSDAGPPLISDPGHLLVACR 97 (276)
T ss_pred hCCEEEecCchhHHHHHHhcCCCCceEEEecccHhHHHHHHHHHH-------HcCCcEEEEecCCCCCcCCccHHHHHHH
Confidence 346788888766665555543222233333344444443332211 112234789999999865 99999999
Q ss_pred HhcCCCCCCcEEEEec
Q 048660 171 KESSVFREVPVVIMSS 186 (213)
Q Consensus 171 r~~~~~~~~pII~lt~ 186 (213)
++. .++++.+-+
T Consensus 98 ~~~----~i~v~~ipG 109 (276)
T TIGR00096 98 EKA----NIIVVPLPG 109 (276)
T ss_pred HHC----CCeEEcCCh
Confidence 975 456776644
No 259
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=58.91 E-value=76 Score=26.07 Aligned_cols=54 Identities=19% Similarity=0.342 Sum_probs=38.8
Q ss_pred eEEEEeCCC---CCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHc-CCCeeee
Q 048660 150 NLIITDYTM---PGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEE-GAEEYIV 206 (213)
Q Consensus 150 dlil~D~~m---p~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~-G~~~~L~ 206 (213)
.+++.|+.- -.+-.+++++++++. ..+|+|+-.+-.+.++..++++. |+++.+.
T Consensus 169 ~ii~~~i~~~g~~~g~d~~~i~~~~~~---~~ipvia~GGv~s~~d~~~~~~~~G~~gviv 226 (253)
T PRK02083 169 EILLTSMDRDGTKNGYDLELTRAVSDA---VNVPVIASGGAGNLEHFVEAFTEGGADAALA 226 (253)
T ss_pred EEEEcCCcCCCCCCCcCHHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHHhCCccEEeE
Confidence 367766532 112236778888864 46899999999999999999975 9988764
No 260
>PRK03612 spermidine synthase; Provisional
Probab=58.89 E-value=1.1e+02 Score=28.20 Aligned_cols=68 Identities=25% Similarity=0.235 Sum_probs=43.7
Q ss_pred cEEEEEeCCHHHHHHHHH--HHhhc------CCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-
Q 048660 94 LHVLAVDDSYVDRKLIER--LLQIS------SCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG- 163 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~--~L~~~------g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G- 163 (213)
.+|.+||=|+.+.+..++ .+... +-++. ...|+.+.++.. ...||+|++|..-|...+
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~------------~~~fDvIi~D~~~~~~~~~ 389 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL------------AEKFDVIIVDLPDPSNPAL 389 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC------------CCCCCEEEEeCCCCCCcch
Confidence 589999999999999888 44321 12343 345666555432 247999999986654322
Q ss_pred -----HHHHHHHHhc
Q 048660 164 -----YELLKKIKES 173 (213)
Q Consensus 164 -----~e~~~~ir~~ 173 (213)
.++.+.+++.
T Consensus 390 ~~L~t~ef~~~~~~~ 404 (521)
T PRK03612 390 GKLYSVEFYRLLKRR 404 (521)
T ss_pred hccchHHHHHHHHHh
Confidence 2566666654
No 261
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=58.75 E-value=17 Score=30.52 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=36.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEc-------CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVE-------SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM 158 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~-------~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m 158 (213)
+||||+..+-.+...+...|...|+.+.... +.++..+.+ ....||+||-=..+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~-----------~~~~pd~Vin~aa~ 61 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLL-----------EAFKPDVVINCAAY 61 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHH-----------HHH--SEEEE----
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHH-----------HHhCCCeEecccee
Confidence 4899999999999999999999898887763 444444555 33468988755433
No 262
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=58.63 E-value=92 Score=24.80 Aligned_cols=54 Identities=20% Similarity=0.244 Sum_probs=38.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC--KVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
..+++.||-|......++.-++..+. .+. ...|...++..+. ....||+|++|-
T Consensus 66 A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~----------~~~~FDlVflDP 122 (187)
T COG0742 66 AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG----------TREPFDLVFLDP 122 (187)
T ss_pred CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC----------CCCcccEEEeCC
Confidence 45899999999999999999988772 333 3344445665552 222599999995
No 263
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=58.48 E-value=90 Score=25.69 Aligned_cols=77 Identities=14% Similarity=0.152 Sum_probs=52.6
Q ss_pred ccEEEEE------eCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHH
Q 048660 93 ELHVLAV------DDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYEL 166 (213)
Q Consensus 93 ~~~ILvV------dD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~ 166 (213)
+.+|++| +|....-...+..+++.|+.+......++..+.+. ..|+|++ ++.|-+.+
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~-------------~ad~I~v----~GGnt~~l 93 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIE-------------NAEAIFV----GGGNTFQL 93 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHh-------------cCCEEEE----CCccHHHH
Confidence 4577777 34444456688889999999988887777776663 4577776 67888888
Q ss_pred HHHHHhcCC--------CCCCcEEEEec
Q 048660 167 LKKIKESSV--------FREVPVVIMSS 186 (213)
Q Consensus 167 ~~~ir~~~~--------~~~~pII~lt~ 186 (213)
++.+++... ....|++-.++
T Consensus 94 ~~~l~~~gl~~~l~~~~~~G~~~~G~SA 121 (233)
T PRK05282 94 LKQLYERGLLAPIREAVKNGTPYIGWSA 121 (233)
T ss_pred HHHHHHCCcHHHHHHHHHCCCEEEEECH
Confidence 888775321 13456666655
No 264
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=58.13 E-value=90 Score=24.54 Aligned_cols=83 Identities=14% Similarity=0.167 Sum_probs=50.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCE--EE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCK--VT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~--v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
+|..||.++...+.++.-++..+.. +. ...|..+++..+.. ....+|+|++|=-.....-.++++.+.
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~---------~~~~~dvv~~DPPy~~~~~~~~l~~l~ 144 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK---------KPTFDNVIYLDPPFFNGALQALLELCE 144 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc---------cCCCceEEEECcCCCCCcHHHHHHHHH
Confidence 7999999999999999998877753 33 34454455543311 122489999996443333445666665
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+..-...--+|++-.
T Consensus 145 ~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 145 NNWILEDTVLIVVEE 159 (189)
T ss_pred HCCCCCCCeEEEEEe
Confidence 533233444555543
No 265
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=57.87 E-value=34 Score=30.79 Aligned_cols=72 Identities=18% Similarity=0.313 Sum_probs=49.1
Q ss_pred EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHH
Q 048660 119 KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCL 197 (213)
Q Consensus 119 ~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~ 197 (213)
.+.+-++.++-++.+ .....|+|++|..-.. .--++.++.|++. +|++.||. ..-...+.....+
T Consensus 245 aiGTre~dK~rl~ll-----------~~aGvdvviLDSSqGnS~~qiemik~iK~~--yP~l~Via-GNVVT~~qa~nLI 310 (503)
T KOG2550|consen 245 AIGTRDDDKERLDLL-----------VQAGVDVVILDSSQGNSIYQLEMIKYIKET--YPDLQIIA-GNVVTKEQAANLI 310 (503)
T ss_pred ccccccchhHHHHHh-----------hhcCCcEEEEecCCCcchhHHHHHHHHHhh--CCCceeec-cceeeHHHHHHHH
Confidence 344455666777776 3346799999986443 2256789999987 67888774 2222356778889
Q ss_pred HcCCCee
Q 048660 198 EEGAEEY 204 (213)
Q Consensus 198 ~~G~~~~ 204 (213)
.+|+|+.
T Consensus 311 ~aGaDgL 317 (503)
T KOG2550|consen 311 AAGADGL 317 (503)
T ss_pred HccCcee
Confidence 9999875
No 266
>PRK15320 transcriptional activator SprB; Provisional
Probab=57.75 E-value=43 Score=27.18 Aligned_cols=98 Identities=12% Similarity=0.071 Sum_probs=66.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhc--CCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 95 HVLAVDDSYVDRKLIERLLQIS--SCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~--g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
+|.|-.|+=.+.-.++.++++. |..+.++.+....+..++. .||.+|+=.--|.--- =+.-.+++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~------------~p~a~lil~l~p~eh~-~lf~~l~~ 69 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSD------------MPDAGLILALNPHEHV-YLFHALLT 69 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhh------------CCCceEEEeeCchhHH-HHHHHHHH
Confidence 5788889988888899998865 7889999998888888742 5665555444454333 34445555
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVK 207 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~K 207 (213)
. .++-|+++++..---.++.-..-.|+-+|+.|
T Consensus 70 ~--l~~~~v~vv~d~l~~~dr~vl~~~g~~~~~l~ 102 (251)
T PRK15320 70 R--LQNRKVLVVADRLYYIDRCVLQYFGVMDYVLK 102 (251)
T ss_pred H--cCCCceEEEecceeehhhhhhhhhcchhHHHH
Confidence 4 56788999988655444444445566666544
No 267
>PRK08005 epimerase; Validated
Probab=57.68 E-value=29 Score=28.14 Aligned_cols=88 Identities=14% Similarity=0.145 Sum_probs=52.9
Q ss_pred HHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHH----HHHHhcCC-CCCCcEEE
Q 048660 109 IERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELL----KKIKESSV-FREVPVVI 183 (213)
Q Consensus 109 l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~----~~ir~~~~-~~~~pII~ 183 (213)
+-..+++.|..+..|=+...-++.+.... ...|.|++=..-|+..|-.+. ++|++... .... -|-
T Consensus 98 ~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l---------~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~-~I~ 167 (210)
T PRK08005 98 ILADIRAIGAKAGLALNPATPLLPYRYLA---------LQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAA-ECW 167 (210)
T ss_pred HHHHHHHcCCcEEEEECCCCCHHHHHHHH---------HhcCEEEEEEecCCCccceecHHHHHHHHHHHHhcccC-CEE
Confidence 44556667777776644433333221100 146777776677887665544 34443211 1222 377
Q ss_pred EecCCCHHHHHHHHHcCCCeeee
Q 048660 184 MSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 184 lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+-+.-+.+....+.++|+|.++.
T Consensus 168 VDGGI~~~~i~~l~~aGad~~V~ 190 (210)
T PRK08005 168 ADGGITLRAARLLAAAGAQHLVI 190 (210)
T ss_pred EECCCCHHHHHHHHHCCCCEEEE
Confidence 88888899999999999997754
No 268
>PRK10742 putative methyltransferase; Provisional
Probab=57.66 E-value=1e+02 Score=25.76 Aligned_cols=99 Identities=14% Similarity=0.103 Sum_probs=59.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhc------CC----EEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQIS------SC----KVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP 159 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~------g~----~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp 159 (213)
+.+.+|..||-++.....++.-|++. +. ++. ...+..+.++.. . ..||+|.+|=.-|
T Consensus 108 s~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~-----------~-~~fDVVYlDPMfp 175 (250)
T PRK10742 108 SVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-----------T-PRPQVVYLDPMFP 175 (250)
T ss_pred HcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC-----------C-CCCcEEEECCCCC
Confidence 34567999999999999999999874 21 232 235555555432 2 2699999998888
Q ss_pred CCCH-HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeC
Q 048660 160 GMTG-YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVK 207 (213)
Q Consensus 160 ~~~G-~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~K 207 (213)
...- -...+.+|-.. -++-......+....++..--.-++.|
T Consensus 176 ~~~ksa~vkk~mr~~~------~l~g~d~d~~~lL~~Al~~A~kRVVVK 218 (250)
T PRK10742 176 HKQKSALVKKEMRVFQ------SLVGPDLDADGLLEPARLLATKRVVVK 218 (250)
T ss_pred CCccccchhhhHHHHH------HhcCCCCChHHHHHHHHHhcCceEEEe
Confidence 7431 11233333210 012233445666777776665555555
No 269
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=57.34 E-value=1.6e+02 Score=27.19 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=61.9
Q ss_pred ccEEEEEeCCH----HHHHHHHHHHhhc-CCEEE--EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC---------
Q 048660 93 ELHVLAVDDSY----VDRKLIERLLQIS-SCKVT--AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY--------- 156 (213)
Q Consensus 93 ~~~ILvVdD~~----~~~~~l~~~L~~~-g~~v~--~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~--------- 156 (213)
+..|+++|-.. ...+.++++=+.+ +..+. -+.+.++|...++ .-.|.|.+-+
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~------------aGaD~i~vg~g~G~~~~t~ 327 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQ------------AGVDGLRVGMGSGSICTTQ 327 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHH------------cCcCEEEECCCCCccccCc
Confidence 45677777432 1223444444444 23443 3677777777763 2467776532
Q ss_pred -----CCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 157 -----TMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 157 -----~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
..|...-+..+..+.+. ..+|||+=.+-....+..+|+.+||+.+.
T Consensus 328 ~~~~~g~~~~~~i~~~~~~~~~---~~vpVIadGGI~~~~di~kAla~GA~~V~ 378 (505)
T PLN02274 328 EVCAVGRGQATAVYKVASIAAQ---HGVPVIADGGISNSGHIVKALTLGASTVM 378 (505)
T ss_pred cccccCCCcccHHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 12333455556666653 36899999999999999999999999865
No 270
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=56.97 E-value=1.1e+02 Score=27.34 Aligned_cols=99 Identities=20% Similarity=0.193 Sum_probs=63.8
Q ss_pred CCccEEEEEeC-CHHHHHHHHHHHhhcCCEEEEEcC--HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC-CCCC---H
Q 048660 91 SKELHVLAVDD-SYVDRKLIERLLQISSCKVTAVES--GTRALQYLGLDGEQSNVGFDALKVNLIITDYTM-PGMT---G 163 (213)
Q Consensus 91 ~~~~~ILvVdD-~~~~~~~l~~~L~~~g~~v~~a~~--g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m-p~~~---G 163 (213)
..+-+||+.+| ---.+..+..+|.++|..+..+.. ..+.++.+ .....++|+++.-- |-|. -
T Consensus 100 ~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~-----------~~~~tk~v~lEtPsNP~l~v~DI 168 (396)
T COG0626 100 KAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAI-----------KEPNTKLVFLETPSNPLLEVPDI 168 (396)
T ss_pred CCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHh-----------cccCceEEEEeCCCCcccccccH
Confidence 34678999888 567788899999999999987764 44455555 22357899998732 4443 3
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
-.+.+..++. . .++++-..-.....++.+..|+|-++
T Consensus 169 ~~i~~~A~~~----g-~~vvVDNTfatP~~q~PL~~GaDIVv 205 (396)
T COG0626 169 PAIARLAKAY----G-ALVVVDNTFATPVLQRPLELGADIVV 205 (396)
T ss_pred HHHHHHHHhc----C-CEEEEECCcccccccChhhcCCCEEE
Confidence 3333333332 2 44555444445577888999987654
No 271
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=56.94 E-value=78 Score=27.83 Aligned_cols=64 Identities=17% Similarity=0.122 Sum_probs=41.0
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHhhcCCEEEEEcC---------HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC
Q 048660 94 LHVLAVDDSYVD-----RKLIERLLQISSCKVTAVES---------GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP 159 (213)
Q Consensus 94 ~~ILvVdD~~~~-----~~~l~~~L~~~g~~v~~a~~---------g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp 159 (213)
.|+|||-|.... .+.+...|+..|..+..+.. ..++++.+ +...+|+|| ...
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~D~II---aiG 94 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELC-----------KEEKVDFIL---AVG 94 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHH-----------HHcCCCEEE---EeC
Confidence 488888775433 35677888888887765532 33455555 345789887 346
Q ss_pred CCCHHHHHHHHH
Q 048660 160 GMTGYELLKKIK 171 (213)
Q Consensus 160 ~~~G~e~~~~ir 171 (213)
+.+-+++++.+.
T Consensus 95 GGS~iD~aK~ia 106 (382)
T cd08187 95 GGSVIDSAKAIA 106 (382)
T ss_pred ChHHHHHHHHHH
Confidence 667777766653
No 272
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=56.81 E-value=43 Score=25.90 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=52.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhc--CCEEEEEcC-------HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQIS--SCKVTAVES-------GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT 162 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~--g~~v~~a~~-------g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~ 162 (213)
.+.+|.++...+...+.+...|++. |..+....+ ..+.++.+ ....||+|++-+.+|.-.
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I-----------~~~~pdiv~vglG~PkQE 113 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERI-----------NASGADILFVGLGAPKQE 113 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHH-----------HHcCCCEEEEECCCCHHH
Confidence 4689999999999999888888765 445444221 22245555 445799999999999854
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEec
Q 048660 163 GYELLKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~ 186 (213)
.++...++. . +.++++..+
T Consensus 114 --~~~~~~~~~--l-~~~v~~~vG 132 (171)
T cd06533 114 --LWIARHKDR--L-PVPVAIGVG 132 (171)
T ss_pred --HHHHHHHHH--C-CCCEEEEec
Confidence 456666654 2 345554433
No 273
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=56.71 E-value=14 Score=29.11 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=26.6
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcC
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVES 125 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~ 125 (213)
||+||....+-..+..+|++.|+.+..+..
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~~ 31 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVRN 31 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEEC
Confidence 899999999999999999999998877654
No 274
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=56.67 E-value=1.1e+02 Score=27.18 Aligned_cols=69 Identities=13% Similarity=0.100 Sum_probs=44.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC-EEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC-HHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSC-KVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT-GYELLKKI 170 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~-~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~-G~e~~~~i 170 (213)
.+|+-||-++...+..+.-++..|. .+. ...+..+.+..+.. ....+|+|++|- |... ..++++.+
T Consensus 315 ~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~---------~~~~~D~vi~dP--Pr~G~~~~~l~~l 383 (431)
T TIGR00479 315 KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPW---------AGQIPDVLLLDP--PRKGCAAEVLRTI 383 (431)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHh---------cCCCCCEEEECc--CCCCCCHHHHHHH
Confidence 4799999999998888888877665 232 34555554433210 223589999985 3322 36677777
Q ss_pred Hhc
Q 048660 171 KES 173 (213)
Q Consensus 171 r~~ 173 (213)
.+.
T Consensus 384 ~~l 386 (431)
T TIGR00479 384 IEL 386 (431)
T ss_pred Hhc
Confidence 764
No 275
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=56.57 E-value=71 Score=25.24 Aligned_cols=35 Identities=6% Similarity=0.096 Sum_probs=29.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTR 128 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~e 128 (213)
++|+|||-..-+...+.+.|++.|+.+..+.+.++
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~ 35 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV 35 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH
Confidence 36999998777888888999999999999988643
No 276
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=56.28 E-value=93 Score=26.10 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=54.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCce-eEEEEeCCCCC--CCHHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKV-NLIITDYTMPG--MTGYELLKKI 170 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~-dlil~D~~mp~--~~G~e~~~~i 170 (213)
+-+.-+.-...+...+...|.+.|..+....+....+..+. ...+ |++| =+...+ ..-.++++..
T Consensus 133 I~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~-----------~~~~~Dv~i-~iS~sG~t~e~i~~a~~a 200 (281)
T COG1737 133 IYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLA-----------LLTPGDVVI-AISFSGYTREIVEAAELA 200 (281)
T ss_pred EEEEEechhHHHHHHHHHHHHHcCCceeEecchHHHHHHHH-----------hCCCCCEEE-EEeCCCCcHHHHHHHHHH
Confidence 44445567888888999999999999998888777664332 1123 3333 333333 3466677777
Q ss_pred HhcCCCCCCcEEEEecCCCHH
Q 048660 171 KESSVFREVPVVIMSSEDVLT 191 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~ 191 (213)
++. ..+||.+|......
T Consensus 201 k~~----ga~vIaiT~~~~sp 217 (281)
T COG1737 201 KER----GAKVIAITDSADSP 217 (281)
T ss_pred HHC----CCcEEEEcCCCCCc
Confidence 764 58999999985544
No 277
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=56.14 E-value=32 Score=26.69 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=25.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcCH
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESG 126 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g 126 (213)
|||+|.....-..+.+.|++.|+.+......
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~~ 31 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRND 31 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeCC
Confidence 6899988888888999999999987766553
No 278
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=56.13 E-value=46 Score=26.82 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=27.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESG 126 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g 126 (213)
+||||+|.....-..+...|.+.|+.+......
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~ 33 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRND 33 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECC
Confidence 379999998887778889999999988776554
No 279
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=55.97 E-value=53 Score=23.38 Aligned_cols=26 Identities=15% Similarity=0.023 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhcCCEEEEEcCHHHHH
Q 048660 105 DRKLIERLLQISSCKVTAVESGTRAL 130 (213)
Q Consensus 105 ~~~~l~~~L~~~g~~v~~a~~g~eal 130 (213)
....+...|...||.+.......+.|
T Consensus 13 ~~~~~a~~l~~~G~~i~AT~gTa~~L 38 (112)
T cd00532 13 MLVDLAPKLSSDGFPLFATGGTSRVL 38 (112)
T ss_pred HHHHHHHHHHHCCCEEEECcHHHHHH
Confidence 33344444555666665443333333
No 280
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=55.85 E-value=1e+02 Score=25.72 Aligned_cols=92 Identities=22% Similarity=0.307 Sum_probs=64.4
Q ss_pred eCCHHHHHHHHHHHhhc-CCEEE------EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CCHHHHHHHHH
Q 048660 100 DDSYVDRKLIERLLQIS-SCKVT------AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MTGYELLKKIK 171 (213)
Q Consensus 100 dD~~~~~~~l~~~L~~~-g~~v~------~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~G~e~~~~ir 171 (213)
.|.....+.++.+++.. |..++ .+.+..+|++.+. ...++=||+-=.-+. .+|++.++.+.
T Consensus 97 ~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~-----------~lG~~rILTSGg~~~a~~g~~~L~~lv 165 (248)
T PRK11572 97 VDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLA-----------DLGVARILTSGQQQDAEQGLSLIMELI 165 (248)
T ss_pred CCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHH-----------HcCCCEEECCCCCCCHHHHHHHHHHHH
Confidence 35567778888888754 34333 3568888999883 345788888766654 67999999887
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
+.. .. .+|+..+--..+........|+..|-
T Consensus 166 ~~a--~~-~~Im~GgGV~~~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 166 AAS--DG-PIIMAGAGVRLSNLHKFLDAGVREVH 196 (248)
T ss_pred Hhc--CC-CEEEeCCCCCHHHHHHHHHcCCCEEe
Confidence 753 23 34666666777777777789998874
No 281
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=55.83 E-value=40 Score=25.70 Aligned_cols=51 Identities=18% Similarity=0.087 Sum_probs=32.5
Q ss_pred CCccEEEEEeCCHHH---------HHHHHHHHhhc-CCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEE
Q 048660 91 SKELHVLAVDDSYVD---------RKLIERLLQIS-SCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLII 153 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~---------~~~l~~~L~~~-g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil 153 (213)
...+.|.|||.|... -+.+...|... .+.+. ..+.++|.+.+ ...+++.++
T Consensus 41 ~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~-~~~~~ea~~~l-----------~~g~~~~~i 101 (164)
T TIGR03061 41 LDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWH-FVSAKEAEKGL-----------ADGKYYMVI 101 (164)
T ss_pred cCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceE-EcCHHHHHHHh-----------HcCcEEEEE
Confidence 356789999877653 34445555543 44544 34889999988 455666665
No 282
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=55.51 E-value=1.4e+02 Score=26.36 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=47.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCE-EE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCK-VT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~-v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
.+|..+|-++...+.++.-++..+.. +. ...|....+... ...||+|.+|- ++.. ..++...-
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~------------~~~fDvIdlDP--fGs~-~~fld~al 134 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR------------NRKFHVIDIDP--FGTP-APFVDSAI 134 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh------------CCCCCEEEeCC--CCCc-HHHHHHHH
Confidence 57999999999999999998876643 32 223333333321 23699999996 4432 24444433
Q ss_pred hcCCCCCCcEEEEecCCC
Q 048660 172 ESSVFREVPVVIMSSEDV 189 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~ 189 (213)
+. ..+--++.+|+.+.
T Consensus 135 ~~--~~~~glL~vTaTD~ 150 (374)
T TIGR00308 135 QA--SAERGLLLVTATDT 150 (374)
T ss_pred Hh--cccCCEEEEEeccc
Confidence 22 12334777776543
No 283
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=55.46 E-value=1.1e+02 Score=24.77 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=30.7
Q ss_pred eCCCCCCCHHHHHHHHHhcCCC-CCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCC
Q 048660 155 DYTMPGMTGYELLKKIKESSVF-REVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209 (213)
Q Consensus 155 D~~mp~~~G~e~~~~ir~~~~~-~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~ 209 (213)
.+.|-.-+.++.++.+++.... ++ -+|-...-.+.++..++.++|++ |+.-|.
T Consensus 43 Eit~~~~~a~~~i~~l~~~~~~~p~-~~vGaGTV~~~~~~~~a~~aGA~-FivsP~ 96 (213)
T PRK06552 43 EVTYTNPFASEVIKELVELYKDDPE-VLIGAGTVLDAVTARLAILAGAQ-FIVSPS 96 (213)
T ss_pred EEECCCccHHHHHHHHHHHcCCCCC-eEEeeeeCCCHHHHHHHHHcCCC-EEECCC
Confidence 3344444577778888765211 12 23444445567778888888884 555553
No 284
>TIGR01232 lacD tagatose 1,6-diphosphate aldolase. This family consists of Gram-positive proteins. Tagatose 1,6-diphosphate aldolase is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=55.43 E-value=45 Score=28.92 Aligned_cols=43 Identities=16% Similarity=0.238 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHH----HHHcCC--Ceeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDS----CLEEGA--EEYIV 206 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~----~~~~G~--~~~L~ 206 (213)
-++++.+++.....++|.|+||+..+.+...+ |.++|+ ++||.
T Consensus 227 ~eA~~~f~eq~~~~~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGvL~ 275 (325)
T TIGR01232 227 EEAAQHFKDQDAATHLPYIYLSAGVSAELFQETLKFAHEAGAKFNGVLC 275 (325)
T ss_pred HHHHHHHHHHhhccCCCEEEEcCCCCHHHHHHHHHHHHHcCCCcceEEe
Confidence 47888888755567899999999888776544 557788 78885
No 285
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=55.36 E-value=79 Score=24.02 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=44.3
Q ss_pred EEEEEeCCHHHHHHHHHH---HhhcCCE--EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 95 HVLAVDDSYVDRKLIERL---LQISSCK--VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~---L~~~g~~--v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
-+.||.||+..+.=|+.. |++.+.. |+-+. ..++++.+++. -+. +.|--.+|-+++++
T Consensus 64 plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVVNV~-t~~~L~~Lr~l-----------apg-----l~l~P~sgddLA~r 126 (142)
T PF11072_consen 64 PLFLVGDDPLSRQWLQQNAEELKQLGAVGLVVNVA-TEAALQRLRQL-----------APG-----LPLLPVSGDDLARR 126 (142)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEEecC-CHHHHHHHHHH-----------cCC-----CeecCCCHHHHHHH
Confidence 589999999999988876 4555542 23333 34567766432 223 33445589999999
Q ss_pred HHhcCCCCCCcEEEE
Q 048660 170 IKESSVFREVPVVIM 184 (213)
Q Consensus 170 ir~~~~~~~~pII~l 184 (213)
+.- .+-|+++.
T Consensus 127 L~l----~HYPvLIt 137 (142)
T PF11072_consen 127 LGL----SHYPVLIT 137 (142)
T ss_pred hCC----CcccEEee
Confidence 963 45676643
No 286
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=55.33 E-value=34 Score=28.46 Aligned_cols=60 Identities=15% Similarity=0.262 Sum_probs=40.9
Q ss_pred CceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCC
Q 048660 147 LKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVK 210 (213)
Q Consensus 147 ~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~ 210 (213)
..||++++=--.|...|-..+|++.+. ..+|.|++|........ .+++..-.+|+.-+.+
T Consensus 58 ~~pdf~I~isPN~~~PGP~~ARE~l~~---~~iP~IvI~D~p~~k~k-d~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 58 WDPDFVIVISPNAAAPGPTKAREMLSA---KGIPCIVISDAPTKKAK-DALEEEGFGYIIVKAD 117 (276)
T ss_dssp H--SEEEEE-S-TTSHHHHHHHHHHHH---SSS-EEEEEEGGGGGGH-HHHHHTT-EEEEETTS
T ss_pred hCCCEEEEECCCCCCCCcHHHHHHHHh---CCCCEEEEcCCCchhhH-HHHHhcCCcEEEEecC
Confidence 368988887777788899999998864 47899999987666654 5666666688776655
No 287
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=55.23 E-value=88 Score=23.54 Aligned_cols=56 Identities=25% Similarity=0.145 Sum_probs=39.1
Q ss_pred ceeEEEEeCCCCCCCH-------HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 148 KVNLIITDYTMPGMTG-------YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~dlil~D~~mp~~~G-------~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..|.+.++-..+...+ ...+..++. ...+||++..+-...+...++++.|++.+..
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKR---GSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHh---cCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 4678888776665332 234444444 3578999888887778899999999988753
No 288
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=55.16 E-value=39 Score=27.54 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=39.3
Q ss_pred eEEEEeCCCCC---CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 150 NLIITDYTMPG---MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 150 dlil~D~~mp~---~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
.+++.|+.--+ ..-+++++++++. ..+|+++-.+-.+.++..+++..|++..+
T Consensus 43 ~i~i~d~~~~~~~~~~~~~~i~~i~~~---~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ 98 (243)
T cd04731 43 ELVFLDITASSEGRETMLDVVERVAEE---VFIPLTVGGGIRSLEDARRLLRAGADKVS 98 (243)
T ss_pred EEEEEcCCcccccCcccHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCceEE
Confidence 36777776321 2246678888875 36899999888999999999999987654
No 289
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=55.13 E-value=84 Score=24.61 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=45.6
Q ss_pred HHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC-------HHHHHHHHHhcCC--
Q 048660 108 LIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT-------GYELLKKIKESSV-- 175 (213)
Q Consensus 108 ~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~-------G~e~~~~ir~~~~-- 175 (213)
...+.++..|..+... .+..+.++.+. ...|.++++..-|+.. +++.++++++...
T Consensus 95 ~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~------------~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~ 162 (210)
T TIGR01163 95 RLLQLIKDLGAKAGIVLNPATPLEFLEYVL------------PDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDEN 162 (210)
T ss_pred HHHHHHHHcCCcEEEEECCCCCHHHHHHHH------------hhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhc
Confidence 3335555566544332 23455555442 1246666654434433 3345555554211
Q ss_pred CCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 176 FREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 176 ~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+.+||+ +.+.-+.+...++.+.|++.++.
T Consensus 163 ~~~~~i~-v~GGI~~env~~l~~~gad~iiv 192 (210)
T TIGR01163 163 GLSILIE-VDGGVNDDNARELAEAGADILVA 192 (210)
T ss_pred CCCceEE-EECCcCHHHHHHHHHcCCCEEEE
Confidence 1235654 44445578888889999998754
No 290
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=54.99 E-value=1.6e+02 Score=28.87 Aligned_cols=100 Identities=11% Similarity=0.077 Sum_probs=57.7
Q ss_pred cEEEEEeCCHH---HHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC--HHHHHH
Q 048660 94 LHVLAVDDSYV---DRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT--GYELLK 168 (213)
Q Consensus 94 ~~ILvVdD~~~---~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~--G~e~~~ 168 (213)
.+|.++.-|.. ..+.++.+-+..|..+..+.+..+..+.+.. ...+|+||+|. ++++ --.+.+
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~----------~~~~D~VLIDT--AGRs~~d~~l~e 283 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA----------LGDKHLVLIDT--VGMSQRDRNVSE 283 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH----------hcCCCEEEEeC--CCCCccCHHHHH
Confidence 47878776643 2355666666677777777787776666642 23579999998 4422 112344
Q ss_pred HHHhc--CCCCCCcEEEEecCCCHHHHH---HHHHc----CCCeee
Q 048660 169 KIKES--SVFREVPVVIMSSEDVLTQID---SCLEE----GAEEYI 205 (213)
Q Consensus 169 ~ir~~--~~~~~~pII~lt~~~~~~~~~---~~~~~----G~~~~L 205 (213)
++... ...+.-.++++++....++.. +.++. +.++++
T Consensus 284 el~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glI 329 (767)
T PRK14723 284 QIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCI 329 (767)
T ss_pred HHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEE
Confidence 44331 123555677777766555443 33432 566653
No 291
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=54.93 E-value=1.2e+02 Score=24.88 Aligned_cols=61 Identities=21% Similarity=0.354 Sum_probs=45.8
Q ss_pred CCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCC
Q 048660 145 DALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209 (213)
Q Consensus 145 ~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~ 209 (213)
....||.|++=--.|...|-...|++.+. ...|.|+++.........+.-+.|. +|+.-+.
T Consensus 57 e~~~pDfvi~isPNpaaPGP~kARE~l~~---s~~PaiiigDaPg~~vkdeleeqGl-GYIivk~ 117 (277)
T COG1927 57 EEFNPDFVIYISPNPAAPGPKKAREILSD---SDVPAIIIGDAPGLKVKDELEEQGL-GYIIVKA 117 (277)
T ss_pred HhcCCCEEEEeCCCCCCCCchHHHHHHhh---cCCCEEEecCCccchhHHHHHhcCC-eEEEecC
Confidence 44578999988888888999999999874 5789998888776666666666666 5654443
No 292
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=54.82 E-value=69 Score=22.22 Aligned_cols=56 Identities=23% Similarity=0.156 Sum_probs=39.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC--EE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC--KV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP 159 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~--~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp 159 (213)
..++..+|=++...+..+..+...+. .+ ....|..+..+.+ ....+|+|++|.-..
T Consensus 23 ~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----------~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 23 AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----------PDGKFDLIVTNPPYG 81 (117)
T ss_dssp TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----------TTT-EEEEEE--STT
T ss_pred CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----------cCceeEEEEECCCCc
Confidence 46899999999999999999988765 33 4455665555444 456899999987543
No 293
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=54.50 E-value=7.3 Score=30.96 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=49.3
Q ss_pred HHHHHHHhhcCCEEEE--EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC----CCHHHHHHHHHhcCCCCCCc
Q 048660 107 KLIERLLQISSCKVTA--VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG----MTGYELLKKIKESSVFREVP 180 (213)
Q Consensus 107 ~~l~~~L~~~g~~v~~--a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~----~~G~e~~~~ir~~~~~~~~p 180 (213)
..+.. |++.|+.+.. +..+...++.+ ....||.|-+|..+-. .....+++.+........+.
T Consensus 138 ~~l~~-l~~~G~~i~ld~~g~~~~~~~~l-----------~~l~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 205 (236)
T PF00563_consen 138 ENLRR-LRSLGFRIALDDFGSGSSSLEYL-----------ASLPPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIK 205 (236)
T ss_dssp HHHHH-HHHCT-EEEEEEETSTCGCHHHH-----------HHHCGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-E
T ss_pred HHHHH-HHhcCceeEeeeccCCcchhhhh-----------hhcccccceeecccccccchhhHHHHHHHHHHHhhccccc
Confidence 44554 6778987754 44444455544 2236899999986542 22333455444322122444
Q ss_pred EEEEecCCCHHHHHHHHHcCCCe
Q 048660 181 VVIMSSEDVLTQIDSCLEEGAEE 203 (213)
Q Consensus 181 II~lt~~~~~~~~~~~~~~G~~~ 203 (213)
++.++-.+.+....+.+.|++-
T Consensus 206 -via~gVe~~~~~~~l~~~G~~~ 227 (236)
T PF00563_consen 206 -VIAEGVESEEQLELLKELGVDY 227 (236)
T ss_dssp -EEEECE-SHHHHHHHHHTTESE
T ss_pred -cceeecCCHHHHHHHHHcCCCE
Confidence 5578888899999999999873
No 294
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=54.41 E-value=33 Score=29.11 Aligned_cols=41 Identities=7% Similarity=-0.097 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
+..++.+++.. ..++|||...+-.+.++..+++.+||+...
T Consensus 230 l~~v~~~~~~~-~~~ipIig~GGI~s~~da~e~l~aGA~~Vq 270 (294)
T cd04741 230 LGNVRTFRRLL-PSEIQIIGVGGVLDGRGAFRMRLAGASAVQ 270 (294)
T ss_pred HHHHHHHHHhc-CCCCCEEEeCCCCCHHHHHHHHHcCCCcee
Confidence 34556666642 236999999999999999999999998763
No 295
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=54.36 E-value=1.1e+02 Score=24.17 Aligned_cols=84 Identities=13% Similarity=0.181 Sum_probs=55.7
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEc-------CHHHHHHHhhhcCCCCCCCCCCCceeEEEEe-CCCCC-CCHHHH
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVE-------SGTRALQYLGLDGEQSNVGFDALKVNLIITD-YTMPG-MTGYEL 166 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~-------~g~eal~~l~~~~~~~~~~~~~~~~dlil~D-~~mp~-~~G~e~ 166 (213)
|||-|-|...++.++..-++.|.++...+ +|++.++++.+. ...|=+|.+| -...+ ..|-++
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a---------~~DPV~VMfDD~G~~g~G~GE~A 73 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQA---------PHDPVLVMFDDKGFIGEGPGEQA 73 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhC---------CCCCEEEEEeCCCCCCCCccHHH
Confidence 56667788888888888889999988765 589999988643 2234444444 34444 468888
Q ss_pred HHHHHhcCCCCCCcEEEEecCC
Q 048660 167 LKKIKESSVFREVPVVIMSSED 188 (213)
Q Consensus 167 ~~~ir~~~~~~~~pII~lt~~~ 188 (213)
++.+-.++...-+-+|+++++.
T Consensus 74 l~~v~~h~~IeVLG~iAVASnT 95 (180)
T PF14097_consen 74 LEYVANHPDIEVLGAIAVASNT 95 (180)
T ss_pred HHHHHcCCCceEEEEEEEEecC
Confidence 8888765333334455555544
No 296
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=54.30 E-value=1.3e+02 Score=26.63 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=50.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCE-E-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH-H
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCK-V-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK-I 170 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~-v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~-i 170 (213)
.+|..+|-++...+.++.-++..|.. + ....|..+.+.. ...||+|++|- |+ .+.+++.. +
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-------------~~~fD~V~lDP--~G-s~~~~l~~al 145 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-------------ERKFDVVDIDP--FG-SPAPFLDSAI 145 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-------------cCCCCEEEECC--CC-CcHHHHHHHH
Confidence 47999999999999999988877653 2 233343333321 23599999995 43 44566655 5
Q ss_pred HhcCCCCCCcEEEEecCCCH
Q 048660 171 KESSVFREVPVVIMSSEDVL 190 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~ 190 (213)
+.. ..--++.+|+.+..
T Consensus 146 ~~~---~~~gilyvSAtD~~ 162 (382)
T PRK04338 146 RSV---KRGGLLCVTATDTA 162 (382)
T ss_pred HHh---cCCCEEEEEecCch
Confidence 543 23357888865543
No 297
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=54.15 E-value=1.3e+02 Score=25.04 Aligned_cols=69 Identities=20% Similarity=0.170 Sum_probs=43.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcC-----CEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC----
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISS-----CKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT---- 162 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g-----~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~---- 162 (213)
..+|.+||-++.+.+..++.+...+ -++. ...++.+.++.. ...||+|++|..-|...
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------------~~~yDvIi~D~~~~~~~~~~l 163 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------------ENTFDVIIVDSTDPVGPAETL 163 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------------CCCccEEEEeCCCCCCcccch
Confidence 3579999999999888888875432 1222 335665555432 34799999998655422
Q ss_pred -HHHHHHHHHhc
Q 048660 163 -GYELLKKIKES 173 (213)
Q Consensus 163 -G~e~~~~ir~~ 173 (213)
..++.+.+++.
T Consensus 164 ~~~ef~~~~~~~ 175 (270)
T TIGR00417 164 FTKEFYELLKKA 175 (270)
T ss_pred hHHHHHHHHHHH
Confidence 34555666653
No 298
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=53.93 E-value=57 Score=31.12 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=61.4
Q ss_pred HHHHHhhcCCEEEE--EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC-----CCCHHHHHHHHHhcCCCCCCcE
Q 048660 109 IERLLQISSCKVTA--VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP-----GMTGYELLKKIKESSVFREVPV 181 (213)
Q Consensus 109 l~~~L~~~g~~v~~--a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp-----~~~G~e~~~~ir~~~~~~~~pI 181 (213)
.-..|++.|+.+.. +.+|...+..+ ....+|.|=+|-.+- +.....+++.|......-++.
T Consensus 683 ~l~~l~~~G~~i~ld~fg~~~~~~~~l-----------~~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~- 750 (799)
T PRK11359 683 RIQILRDMGVGLSVDDFGTGFSGLSRL-----------VSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLT- 750 (799)
T ss_pred HHHHHHHCCCEEEEECCCCchhhHHHH-----------hhCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCe-
Confidence 34457788998865 56777778777 445789999987441 122344566665432223444
Q ss_pred EEEecCCCHHHHHHHHHcCCC---e-eeeCCCCCC
Q 048660 182 VIMSSEDVLTQIDSCLEEGAE---E-YIVKPVKLS 212 (213)
Q Consensus 182 I~lt~~~~~~~~~~~~~~G~~---~-~L~KP~~~~ 212 (213)
++.++-.+.+....+.+.|++ + |+.||...+
T Consensus 751 via~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~ 785 (799)
T PRK11359 751 VVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAE 785 (799)
T ss_pred EEEEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHH
Confidence 446788888999999999996 3 578887653
No 299
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=53.91 E-value=1.7e+02 Score=26.34 Aligned_cols=104 Identities=13% Similarity=0.069 Sum_probs=56.9
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC--CHHHHH
Q 048660 93 ELHVLAVDDSYV---DRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM--TGYELL 167 (213)
Q Consensus 93 ~~~ILvVdD~~~---~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~--~G~e~~ 167 (213)
+.+|.+|+-|+. ..+.++.+-...|..+..+.+..+..+.+.... ....+|+||+|. ++. ..-+.+
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~-------~~~~~D~VLIDT--AGr~~~d~~~l 304 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT-------YVNCVDHILIDT--VGRNYLAEESV 304 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH-------hcCCCCEEEEEC--CCCCccCHHHH
Confidence 467888887753 244566666667776767777776555443110 113589999998 333 223344
Q ss_pred HHHHhcC--CCCCCcEEEEecCCCHHHHHHHH----HcCCCeee
Q 048660 168 KKIKESS--VFREVPVVIMSSEDVLTQIDSCL----EEGAEEYI 205 (213)
Q Consensus 168 ~~ir~~~--~~~~~pII~lt~~~~~~~~~~~~----~~G~~~~L 205 (213)
++++... ..+...++++++.....+....+ ..+.++++
T Consensus 305 ~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI 348 (407)
T PRK12726 305 SEISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFI 348 (407)
T ss_pred HHHHHHhhccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEE
Confidence 4444311 12344455666655555554443 34555543
No 300
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=53.82 E-value=1.4e+02 Score=25.32 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 161 MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 161 ~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
...++++.++++.. ..++|||+-.+-.+..+..+++..||+...
T Consensus 211 ~~~~~~l~~i~~~~-~~~ipvia~GGI~~~~d~~kal~lGAd~V~ 254 (299)
T cd02809 211 PATIDALPEIVAAV-GGRIEVLLDGGIRRGTDVLKALALGADAVL 254 (299)
T ss_pred cCHHHHHHHHHHHh-cCCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 35677888887642 236999999999999999999999999864
No 301
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=53.53 E-value=1.1e+02 Score=24.26 Aligned_cols=102 Identities=22% Similarity=0.338 Sum_probs=55.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc--CC-------------EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQIS--SC-------------KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT 157 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~--g~-------------~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~ 157 (213)
-.+-.||.--+..++++.+++.-| |+ .|..+.+-++|++.+... ....|-+|-+|..
T Consensus 42 v~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~--------~G~~P~~v~TsAr 113 (185)
T PF09936_consen 42 VKGYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEE--------EGKRPLLVATSAR 113 (185)
T ss_dssp -SEEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHH--------HSS--EEEE--SS
T ss_pred CcCEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHH--------hCCCCEEEEecCc
Confidence 346888988888888888888643 21 478899999999988653 3457999999998
Q ss_pred -CCCCCHHHHHHHHHhcCCCCCCcEEEE--ecCCCHHHHHHHHHcCCCeeeeCCCC
Q 048660 158 -MPGMTGYELLKKIKESSVFREVPVVIM--SSEDVLTQIDSCLEEGAEEYIVKPVK 210 (213)
Q Consensus 158 -mp~~~G~e~~~~ir~~~~~~~~pII~l--t~~~~~~~~~~~~~~G~~~~L~KP~~ 210 (213)
-|+.-+++-+++.-.. .+-|++++ |+..-.++.. + ..||+..|+.
T Consensus 114 ~~~~~is~~~lr~~l~~---~~~P~LllFGTGwGL~~ev~---~--~~D~iLePI~ 161 (185)
T PF09936_consen 114 KYPNTISYAELRRMLEE---EDRPVLLLFGTGWGLAPEVM---E--QCDYILEPIR 161 (185)
T ss_dssp --SS-B-HHHHHHHHHH-----S-EEEEE--TT---HHHH---T--T-SEEB--TT
T ss_pred CCCCCcCHHHHHHHHhc---cCCeEEEEecCCCCCCHHHH---H--hcCeeEcccc
Confidence 4555566666555432 24466655 6655443322 1 3468888875
No 302
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=53.46 E-value=29 Score=29.04 Aligned_cols=39 Identities=13% Similarity=0.283 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCCC-CCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 164 YELLKKIKESSVFR-EVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 164 ~e~~~~ir~~~~~~-~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
++.++.+++. .+ ++|||+..+-.+.++..+++.+|++.+
T Consensus 230 ~~~v~~i~~~--~~~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAAR--LQLDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHh--cCCCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 5667788775 33 799999999999999999999998865
No 303
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=53.41 E-value=19 Score=33.43 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=45.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCE-EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC--CCCCHHHHHHHHH
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCK-VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM--PGMTGYELLKKIK 171 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~-v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m--p~~~G~e~~~~ir 171 (213)
+|||||....+-..+.++|++.|+. +........-++.+ ....||.|++-=.- |..++.. .+.++
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~-----------~~~~~d~vIlsgGP~~p~~~~~~-~~li~ 68 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEI-----------EALNPSHIVISPGPGRPEEAGIS-VEVIR 68 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHH-----------HhcCCCEEEECCCCCChhhCCcc-HHHHH
Confidence 4899999999999999999999985 66653322113333 22357766664221 1112221 23333
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
.. ...+||+.+.-
T Consensus 69 ~~--~~~~PvLGICl 81 (534)
T PRK14607 69 HF--SGKVPILGVCL 81 (534)
T ss_pred Hh--hcCCCEEEEcH
Confidence 32 24678887763
No 304
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=53.34 E-value=26 Score=29.62 Aligned_cols=41 Identities=10% Similarity=0.192 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
.+..++.+++.. ..++|||.+.+-.+.++..+.+.+||+.+
T Consensus 230 aL~~V~~~~~~~-~~~i~Iig~GGI~s~~da~e~l~aGA~~V 270 (295)
T PF01180_consen 230 ALRWVRELRKAL-GQDIPIIGVGGIHSGEDAIEFLMAGASAV 270 (295)
T ss_dssp HHHHHHHHHHHT-TTSSEEEEESS--SHHHHHHHHHHTESEE
T ss_pred HHHHHHHHHhcc-ccceEEEEeCCcCCHHHHHHHHHhCCCHh
Confidence 356667777653 24799999999999999999999999875
No 305
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=53.34 E-value=83 Score=25.95 Aligned_cols=54 Identities=20% Similarity=0.283 Sum_probs=41.8
Q ss_pred eEEEEeCCCCCC-C--HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHc-----C-CCeeee
Q 048660 150 NLIITDYTMPGM-T--GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEE-----G-AEEYIV 206 (213)
Q Consensus 150 dlil~D~~mp~~-~--G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~-----G-~~~~L~ 206 (213)
.+|++|+.--++ . .+++++.+++. .++|+|+--+-.+.++..++... | +++.+.
T Consensus 160 ~ii~tdI~rdGt~~G~d~el~~~l~~~---~~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gviv 222 (241)
T PRK14114 160 EIVHTEIEKDGTLQEHDFSLTRKIAIE---AEVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIV 222 (241)
T ss_pred EEEEEeechhhcCCCcCHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEE
Confidence 699999976553 3 45678888874 47899999888999999888886 5 777653
No 306
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=53.29 E-value=74 Score=25.86 Aligned_cols=88 Identities=22% Similarity=0.309 Sum_probs=49.8
Q ss_pred HHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-------HHHHHHHHhcCC--CCCC
Q 048660 109 IERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-------YELLKKIKESSV--FREV 179 (213)
Q Consensus 109 l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-------~e~~~~ir~~~~--~~~~ 179 (213)
+-..+++.|..+..+-+...-++.+.... ...|.|++=..-|+..| ++-++++|+... ..++
T Consensus 98 ~l~~ik~~g~k~GlalnP~Tp~~~i~~~l---------~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~ 168 (220)
T PRK08883 98 TLQLIKEHGCQAGVVLNPATPLHHLEYIM---------DKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDI 168 (220)
T ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHH---------HhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCe
Confidence 33455667777766644333333222110 13566665455576554 455666665321 1235
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 180 PVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 180 pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+|.+ -+.-+.+....+.++|++.+..
T Consensus 169 ~I~v-dGGI~~eni~~l~~aGAd~vVv 194 (220)
T PRK08883 169 RLEI-DGGVKVDNIREIAEAGADMFVA 194 (220)
T ss_pred eEEE-ECCCCHHHHHHHHHcCCCEEEE
Confidence 6554 5556688899999999998753
No 307
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=52.87 E-value=1.6e+02 Score=26.61 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=61.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCE-EE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH--HH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCK-VT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY--EL 166 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~-v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~--e~ 166 (213)
....+|.=||=++..-+..+.-.+..|.. +. .+.+.++...... ....||.||+| |-..|. ++
T Consensus 313 ~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~----------~~~~~d~VvvD---PPR~G~~~~~ 379 (432)
T COG2265 313 KRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW----------EGYKPDVVVVD---PPRAGADREV 379 (432)
T ss_pred ccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc----------ccCCCCEEEEC---CCCCCCCHHH
Confidence 34568999999999999998888877764 43 4466666665542 23478999999 554544 58
Q ss_pred HHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 167 LKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 167 ~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
++.|.+. ....||-+|-+. ......+...--.+|
T Consensus 380 lk~l~~~---~p~~IvYVSCNP-~TlaRDl~~L~~~gy 413 (432)
T COG2265 380 LKQLAKL---KPKRIVYVSCNP-ATLARDLAILASTGY 413 (432)
T ss_pred HHHHHhc---CCCcEEEEeCCH-HHHHHHHHHHHhCCe
Confidence 8888874 233455555443 333433333333334
No 308
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=52.81 E-value=77 Score=27.79 Aligned_cols=64 Identities=14% Similarity=0.165 Sum_probs=42.9
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHhhcCCEEEEEcC---------HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC
Q 048660 94 LHVLAVDDSYVDR-----KLIERLLQISSCKVTAVES---------GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP 159 (213)
Q Consensus 94 ~~ILvVdD~~~~~-----~~l~~~L~~~g~~v~~a~~---------g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp 159 (213)
.|+|||-|..... +.+...|+..|+.+....+ ..++.+.+ +...+|+|| ...
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~D~II---avG 89 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAM-----------REFEPDWII---ALG 89 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHH-----------HhcCCCEEE---EeC
Confidence 4789998865544 5678888888877765543 44555555 345678887 356
Q ss_pred CCCHHHHHHHHH
Q 048660 160 GMTGYELLKKIK 171 (213)
Q Consensus 160 ~~~G~e~~~~ir 171 (213)
+.+.+++++.+-
T Consensus 90 GGSviD~AK~ia 101 (375)
T cd08179 90 GGSPIDAAKAMW 101 (375)
T ss_pred CccHHHHHHHHH
Confidence 777777777664
No 309
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=52.80 E-value=82 Score=22.43 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=50.6
Q ss_pred eCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC--CCHHHHHHHHHhcCCCC
Q 048660 100 DDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG--MTGYELLKKIKESSVFR 177 (213)
Q Consensus 100 dD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~--~~G~e~~~~ir~~~~~~ 177 (213)
.........+...|.+.|..+....+.......+. .-.+-|++|+= ..++ .+-.++++..|+.
T Consensus 9 G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~----------~~~~~d~vi~i-S~sG~t~~~~~~~~~a~~~---- 73 (128)
T cd05014 9 GKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLG----------MVTPGDVVIAI-SNSGETDELLNLLPHLKRR---- 73 (128)
T ss_pred cHhHHHHHHHHHHhhcCCCceEEcccchhhccccC----------cCCCCCEEEEE-eCCCCCHHHHHHHHHHHHC----
Confidence 34455666777778888888877766533222211 11122444432 3333 3456667776654
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCeeeeCC
Q 048660 178 EVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208 (213)
Q Consensus 178 ~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP 208 (213)
.+++|++|+..+..... .+|-.|.-|
T Consensus 74 g~~vi~iT~~~~s~la~-----~ad~~l~~~ 99 (128)
T cd05014 74 GAPIIAITGNPNSTLAK-----LSDVVLDLP 99 (128)
T ss_pred CCeEEEEeCCCCCchhh-----hCCEEEECC
Confidence 68999999987654332 366556554
No 310
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=52.78 E-value=1.4e+02 Score=25.10 Aligned_cols=68 Identities=9% Similarity=-0.019 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhcCCEEEEE-------cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCC
Q 048660 105 DRKLIERLLQISSCKVTAV-------ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFR 177 (213)
Q Consensus 105 ~~~~l~~~L~~~g~~v~~a-------~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~ 177 (213)
....+...+++.|..+... .+-...+..+ ....+|+|++... ..+...+++.+++.. -
T Consensus 157 ~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l-----------~~~~~d~i~~~~~--~~~~~~~~~~~~~~g--~ 221 (345)
T cd06338 157 VAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKA-----------KAAGPDAVVVAGH--FPDAVLLVRQMKELG--Y 221 (345)
T ss_pred HHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHH-----------HhcCCCEEEECCc--chhHHHHHHHHHHcC--C
Confidence 3455666778888877531 2334455555 3346899998653 346777888888763 2
Q ss_pred CCcEEEEecC
Q 048660 178 EVPVVIMSSE 187 (213)
Q Consensus 178 ~~pII~lt~~ 187 (213)
..+++..+..
T Consensus 222 ~~~~~~~~~~ 231 (345)
T cd06338 222 NPKALYMTVG 231 (345)
T ss_pred CCCEEEEecC
Confidence 4456655443
No 311
>COG4825 Uncharacterized membrane-anchored protein conserved in bacteria [Function unknown]
Probab=52.48 E-value=57 Score=28.03 Aligned_cols=55 Identities=20% Similarity=0.178 Sum_probs=37.5
Q ss_pred cCCccEEEEEeCCHHHHHH---HHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 90 CSKELHVLAVDDSYVDRKL---IERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 90 ~~~~~~ILvVdD~~~~~~~---l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
..++.+||||-|.+..+.- ++..+++..-....+..+.+.+... ..+|++|+-|.
T Consensus 177 ~~~gR~VlIva~~~~~~~dLk~lk~fi~ey~pvlIgVdGaAD~l~~~------------GykP~lIvGdp 234 (395)
T COG4825 177 DLRGRHVLIVADEPSFEDDLKSLKPFIKEYQPVLIGVDGAADVLRKA------------GYKPQLIVGDP 234 (395)
T ss_pred hhcccEEEEEeCCCChHhHHHHHHHHHHhhCCEEEEccchHHHHHHc------------CCCcceeecCc
Confidence 3567899999887766655 4555776665556666666666543 45799999773
No 312
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=52.42 E-value=42 Score=26.15 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=25.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEE
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAV 123 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a 123 (213)
|+|||....+...+.+.|++.|+.+...
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~ 28 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELV 28 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEE
Confidence 6899999999999999999999988765
No 313
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=52.20 E-value=45 Score=26.44 Aligned_cols=33 Identities=9% Similarity=0.206 Sum_probs=28.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESG 126 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g 126 (213)
++|+|+|-.-.+...+...|+..|+.+....+.
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~ 33 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDP 33 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCH
Confidence 479999999888899999999999998888653
No 314
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=51.98 E-value=50 Score=25.55 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=38.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHH-HHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTR-ALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM 161 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~e-al~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~ 161 (213)
-.+.+|+||..+..+-.-|..+|.+.|..|+.+.+-.. ..+.++ .-|+|+.-..-|++
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~-------------~ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITR-------------RADIVVSAVGKPNL 92 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHT-------------TSSEEEE-SSSTT-
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceee-------------eccEEeeeeccccc
Confidence 34679999999999999999999999999998855432 223332 34777777766653
No 315
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=51.67 E-value=1e+02 Score=24.73 Aligned_cols=61 Identities=16% Similarity=0.205 Sum_probs=36.8
Q ss_pred CCceeEEEEeCCCCC---------CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHH---HHHcCCCeeeeC
Q 048660 146 ALKVNLIITDYTMPG---------MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDS---CLEEGAEEYIVK 207 (213)
Q Consensus 146 ~~~~dlil~D~~mp~---------~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~---~~~~G~~~~L~K 207 (213)
...+|.|++|+.-.. .+-.+++..++... .....+++=....+.....+ ++..|+++++..
T Consensus 19 ~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~-~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~~gI~lP 91 (221)
T PF03328_consen 19 ASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAAR-AAGSEIIVRVNSLDSPHIERDLEALDAGADGIVLP 91 (221)
T ss_dssp TTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHT-TSSSEEEEE-SSTTCHHHHHHHHHHHTTSSEEEET
T ss_pred hcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccc-cccccceecCCCCCcchhhhhhhhcccCCCeeecc
Confidence 447899999998765 44455666665532 12234443333334444555 899999997653
No 316
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=51.43 E-value=63 Score=26.18 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=39.5
Q ss_pred EEEEeCCCC---CCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 151 LIITDYTMP---GMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 151 lil~D~~mp---~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+++.|+..- ....+++++++++. .++|+++..+-.+.++..++...|+++++.
T Consensus 166 i~~~~~~~~g~~~g~~~~~i~~i~~~---~~iPvia~GGI~~~~di~~~~~~Ga~gv~v 221 (241)
T PRK13585 166 ILFTNVDVEGLLEGVNTEPVKELVDS---VDIPVIASGGVTTLDDLRALKEAGAAGVVV 221 (241)
T ss_pred EEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 566666321 22356788888875 368999988888889999999999998753
No 317
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=51.40 E-value=1.2e+02 Score=26.64 Aligned_cols=64 Identities=16% Similarity=0.104 Sum_probs=39.8
Q ss_pred cEEEEEeCCHHH----HHHHHHHHhhcCCEEEEEcC---------HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC
Q 048660 94 LHVLAVDDSYVD----RKLIERLLQISSCKVTAVES---------GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG 160 (213)
Q Consensus 94 ~~ILvVdD~~~~----~~~l~~~L~~~g~~v~~a~~---------g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~ 160 (213)
.++|||-|.... .+.+...|+..|..+..+.. ..++.+.+ .+..+|+|| ...+
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~d~II---aiGG 92 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALY-----------RENGCDAIL---AVGG 92 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHH-----------HhcCCCEEE---EeCC
Confidence 489999876443 24466677777876665532 34555555 344678877 3466
Q ss_pred CCHHHHHHHHH
Q 048660 161 MTGYELLKKIK 171 (213)
Q Consensus 161 ~~G~e~~~~ir 171 (213)
.+.+++.+.+.
T Consensus 93 GS~~D~aK~ia 103 (374)
T cd08189 93 GSVIDCAKAIA 103 (374)
T ss_pred ccHHHHHHHHH
Confidence 67777666553
No 318
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=51.40 E-value=1.6e+02 Score=25.68 Aligned_cols=64 Identities=13% Similarity=0.166 Sum_probs=41.1
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHhhcCCEEEEEcC---------HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC
Q 048660 94 LHVLAVDDSYVDR-----KLIERLLQISSCKVTAVES---------GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP 159 (213)
Q Consensus 94 ~~ILvVdD~~~~~-----~~l~~~L~~~g~~v~~a~~---------g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp 159 (213)
.|+|||-|..... +.+...|+..|..+..+.+ ..++.+.+ ++..+|+|| ...
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~D~II---avG 91 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIA-----------KKFNADFVI---GIG 91 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHH-----------HhcCCCEEE---EeC
Confidence 5889998865522 5577888887876665432 33444444 345678887 346
Q ss_pred CCCHHHHHHHHH
Q 048660 160 GMTGYELLKKIK 171 (213)
Q Consensus 160 ~~~G~e~~~~ir 171 (213)
+.+-+++.+.+.
T Consensus 92 GGSviD~aK~ia 103 (357)
T cd08181 92 GGSPLDAAKAIA 103 (357)
T ss_pred CchHHHHHHHHH
Confidence 777777777553
No 319
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=51.37 E-value=1e+02 Score=25.74 Aligned_cols=62 Identities=13% Similarity=0.233 Sum_probs=40.5
Q ss_pred ceeEEEEeCCC----CC---CCHHHHHHHHHhcCCCCCCcEEEEecCC-C-----HHHHHHHHHcCCCe-eeeCCCCCC
Q 048660 148 KVNLIITDYTM----PG---MTGYELLKKIKESSVFREVPVVIMSSED-V-----LTQIDSCLEEGAEE-YIVKPVKLS 212 (213)
Q Consensus 148 ~~dlil~D~~m----p~---~~G~e~~~~ir~~~~~~~~pII~lt~~~-~-----~~~~~~~~~~G~~~-~L~KP~~~~ 212 (213)
..+++|+.... |. .-.+..+..+|+. .++||++=+.+. . ......+...|+++ ++-|.++++
T Consensus 160 n~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~---~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d 235 (260)
T TIGR01361 160 NGNVILCERGIRTFEKATRNTLDLSAVPVLKKE---THLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDPE 235 (260)
T ss_pred CCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHh---hCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 45799988622 21 2245566777764 368888734443 3 34566788999998 888888765
No 320
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=51.19 E-value=1.6e+02 Score=25.34 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=30.2
Q ss_pred CccEEEEEeCCHHHH---HHHHHHHhhcCCEEEEEcCH-------HHHHHHhhhcCCCCCCCCCCCceeEEEEeCC
Q 048660 92 KELHVLAVDDSYVDR---KLIERLLQISSCKVTAVESG-------TRALQYLGLDGEQSNVGFDALKVNLIITDYT 157 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~---~~l~~~L~~~g~~v~~a~~g-------~eal~~l~~~~~~~~~~~~~~~~dlil~D~~ 157 (213)
.+.+|++++-|.... +.+...-...|..+.....+ .+++... ....+|+||+|..
T Consensus 141 ~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~-----------~~~~~D~ViIDTa 205 (318)
T PRK10416 141 QGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA-----------KARGIDVLIIDTA 205 (318)
T ss_pred cCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH-----------HhCCCCEEEEeCC
Confidence 356899998775322 23444444556555444221 1233322 2357899999983
No 321
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=51.15 E-value=77 Score=30.80 Aligned_cols=82 Identities=26% Similarity=0.302 Sum_probs=48.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhc-C--CEEEEEcCH---HHHHHHhhhcCCCCCCCCCCCceeEEEEeCC--CCCC-C
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQIS-S--CKVTAVESG---TRALQYLGLDGEQSNVGFDALKVNLIITDYT--MPGM-T 162 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~-g--~~v~~a~~g---~eal~~l~~~~~~~~~~~~~~~~dlil~D~~--mp~~-~ 162 (213)
...+||+||....+-..|..+|++. | +.+.++.+. .+.+..+ ..||.|++-=. -|.- .
T Consensus 4 ~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l-------------~~~D~VVIspGPG~p~~~~ 70 (742)
T TIGR01823 4 QRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELL-------------PLFDAIVVGPGPGNPNNAQ 70 (742)
T ss_pred CCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhh-------------cCCCEEEECCCCCCccchh
Confidence 4679999999988888888888875 3 555554332 2222222 25777776321 1211 2
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEec
Q 048660 163 GYELLKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~ 186 (213)
-..+++.+.+......+||+.+.-
T Consensus 71 ~~~i~~~i~~~~~~~~iPvLGICl 94 (742)
T TIGR01823 71 DMGIISELWELANLDEVPVLGICL 94 (742)
T ss_pred hhHHHHHHHHhcccCCCcEEEEch
Confidence 244667776542234689988764
No 322
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=51.08 E-value=98 Score=25.22 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=40.4
Q ss_pred EEEEeCC-CC-C-CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 151 LIITDYT-MP-G-MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 151 lil~D~~-mp-~-~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
++++|+. +- + ..-+++++.+.+. ..+|+.+=.+-.+.++..+++..|++..+.
T Consensus 46 l~ivDldga~~g~~~n~~~i~~i~~~---~~~pv~~gGGIrs~edv~~l~~~G~~~viv 101 (228)
T PRK04128 46 IHVVDLDGAFEGKPKNLDVVKNIIRE---TGLKVQVGGGLRTYESIKDAYEIGVENVII 101 (228)
T ss_pred EEEEECcchhcCCcchHHHHHHHHhh---CCCCEEEcCCCCCHHHHHHHHHCCCCEEEE
Confidence 7778876 22 2 2467888888864 468888877888899999999999987653
No 323
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=51.07 E-value=1.6e+02 Score=25.30 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHH-cCCCeee
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLE-EGAEEYI 205 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~-~G~~~~L 205 (213)
.++.++++++. .++|||...+-.+.++..++++ .|+|++.
T Consensus 182 ~~~~i~~ik~~---~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 182 EYDSIRAVKQK---VSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred ChHHHHHHHHh---cCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 47888888874 4689999888889999999997 6898864
No 324
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=51.00 E-value=1.2e+02 Score=27.47 Aligned_cols=88 Identities=16% Similarity=0.094 Sum_probs=42.9
Q ss_pred ccEEEEEeCCHH---HHHHHHHHHhhcCCEEEEEc---CHHH-HHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHH
Q 048660 93 ELHVLAVDDSYV---DRKLIERLLQISSCKVTAVE---SGTR-ALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYE 165 (213)
Q Consensus 93 ~~~ILvVdD~~~---~~~~l~~~L~~~g~~v~~a~---~g~e-al~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e 165 (213)
+.+|++|+-|.. ..+.++.+..+.|..+.... +..+ +.+.++. ...+|+||+|..--.....+
T Consensus 123 g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~----------~~~~DvVIIDTAGr~~~d~~ 192 (437)
T PRK00771 123 GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK----------FKKADVIIVDTAGRHALEED 192 (437)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH----------hhcCCEEEEECCCcccchHH
Confidence 468999987753 23335555555666555443 2222 1122211 11349999998421111223
Q ss_pred HHHHHHhc--CCCCCCcEEEEecCCCH
Q 048660 166 LLKKIKES--SVFREVPVVIMSSEDVL 190 (213)
Q Consensus 166 ~~~~ir~~--~~~~~~pII~lt~~~~~ 190 (213)
++++++.. ...++..++++.+....
T Consensus 193 lm~El~~l~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 193 LIEEMKEIKEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred HHHHHHHHHHHhcccceeEEEeccccH
Confidence 44444431 11345556666655443
No 325
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.99 E-value=1.5e+02 Score=25.03 Aligned_cols=91 Identities=11% Similarity=0.073 Sum_probs=57.0
Q ss_pred EEEEEeCCHHHHHHHHH----HHhhcC--CE-EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHH
Q 048660 95 HVLAVDDSYVDRKLIER----LLQISS--CK-VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELL 167 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~----~L~~~g--~~-v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~ 167 (213)
.|||-|++-...-.+.. .-+..+ .. -..+.+.+++.+... ..+|.|.+|- -|.+.+
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~------------~gaDyI~lD~-----~~~e~l 222 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVA------------AGADIIMFDN-----RTPDEI 222 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHH------------cCCCEEEECC-----CCHHHH
Confidence 57777776444433333 333344 22 357788888888762 3578999972 345666
Q ss_pred HHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 168 KKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 168 ~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
+++.+.. ..++| +..++.-+.+......+.|+|.+
T Consensus 223 ~~~~~~~-~~~i~-i~AiGGIt~~ni~~~a~~Gvd~I 257 (277)
T PRK08072 223 REFVKLV-PSAIV-TEASGGITLENLPAYGGTGVDYI 257 (277)
T ss_pred HHHHHhc-CCCce-EEEECCCCHHHHHHHHHcCCCEE
Confidence 7766542 12344 33555667888999999999875
No 326
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=50.91 E-value=1.5e+02 Score=24.86 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=52.5
Q ss_pred HHHHHhhcCCEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH----HHHHHHHHhcCCCCCCcEEE
Q 048660 109 IERLLQISSCKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG----YELLKKIKESSVFREVPVVI 183 (213)
Q Consensus 109 l~~~L~~~g~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G----~e~~~~ir~~~~~~~~pII~ 183 (213)
+...-+.+|..+ +.+.|.+|+-..+.. +.-|+.++.=+... ++.++.|...- ..+..+|.
T Consensus 148 l~~~A~~LGm~~LVEVh~~eEl~rAl~~--------------ga~iIGINnRdL~tf~vdl~~t~~la~~~-p~~~~~Is 212 (254)
T COG0134 148 LVDRAHELGMEVLVEVHNEEELERALKL--------------GAKIIGINNRDLTTLEVDLETTEKLAPLI-PKDVILIS 212 (254)
T ss_pred HHHHHHHcCCeeEEEECCHHHHHHHHhC--------------CCCEEEEeCCCcchheecHHHHHHHHhhC-CCCcEEEe
Confidence 333445678866 467888887777631 12233333333322 33455555432 23466777
Q ss_pred EecCCCHHHHHHHHHcCCCeeee
Q 048660 184 MSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 184 lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
-|+-.+.++..+....|+++||.
T Consensus 213 ESGI~~~~dv~~l~~~ga~a~LV 235 (254)
T COG0134 213 ESGISTPEDVRRLAKAGADAFLV 235 (254)
T ss_pred cCCCCCHHHHHHHHHcCCCEEEe
Confidence 78888999999999999999986
No 327
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=50.83 E-value=1.2e+02 Score=26.67 Aligned_cols=64 Identities=16% Similarity=0.169 Sum_probs=41.8
Q ss_pred cEEEEEeCCHH----HHHHHHHHHhhcCCEEEEEc---------CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC
Q 048660 94 LHVLAVDDSYV----DRKLIERLLQISSCKVTAVE---------SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG 160 (213)
Q Consensus 94 ~~ILvVdD~~~----~~~~l~~~L~~~g~~v~~a~---------~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~ 160 (213)
.++|||-|... ..+.+...|+..|..+..+. +.+++.+.+ +...+|+|| ...+
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~-----------~~~~~D~Ii---aiGG 97 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLL-----------KENNCDSVI---SLGG 97 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHH-----------HHcCCCEEE---EeCC
Confidence 48999987633 34467777887787665543 234455555 345789887 3467
Q ss_pred CCHHHHHHHHH
Q 048660 161 MTGYELLKKIK 171 (213)
Q Consensus 161 ~~G~e~~~~ir 171 (213)
.+.+++++.+.
T Consensus 98 GS~iD~AK~ia 108 (383)
T PRK09860 98 GSPHDCAKGIA 108 (383)
T ss_pred chHHHHHHHHH
Confidence 77778777765
No 328
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=50.67 E-value=1.1e+02 Score=24.74 Aligned_cols=36 Identities=19% Similarity=0.094 Sum_probs=24.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHH
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRAL 130 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal 130 (213)
++||.....-+...+...|.+.|++|.......+.+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~ 37 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENL 37 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 577777777777777777777788776654333333
No 329
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=50.57 E-value=1e+02 Score=25.84 Aligned_cols=91 Identities=19% Similarity=0.156 Sum_probs=55.9
Q ss_pred EEEEEeCCHHHHH----HHHHHHhhcC--C-EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHH
Q 048660 95 HVLAVDDSYVDRK----LIERLLQISS--C-KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELL 167 (213)
Q Consensus 95 ~ILvVdD~~~~~~----~l~~~L~~~g--~-~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~ 167 (213)
.+|+.|++-...- .+...-+..+ . .-..+.+.+|+.+.+. ...|.|.+|-.-| +.+
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~------------~gaDyI~ld~~~~-----e~l 212 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAE------------AGADIIMLDNMKP-----EEI 212 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHH------------cCCCEEEECCCCH-----HHH
Confidence 5788888644332 2222323344 2 3467889999998863 2468999985333 334
Q ss_pred HHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 168 KKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 168 ~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
+++.+.- ...+|++ .++.-+.+......+.|+|.+
T Consensus 213 k~~v~~~-~~~ipi~-AsGGI~~~ni~~~a~~Gvd~I 247 (265)
T TIGR00078 213 KEAVQLL-KGRVLLE-ASGGITLDNLEEYAETGVDVI 247 (265)
T ss_pred HHHHHHh-cCCCcEE-EECCCCHHHHHHHHHcCCCEE
Confidence 4443321 1236755 566667888999999999875
No 330
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=50.56 E-value=92 Score=25.67 Aligned_cols=54 Identities=19% Similarity=0.357 Sum_probs=40.8
Q ss_pred eEEEEeCCCCC---CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 150 NLIITDYTMPG---MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 150 dlil~D~~mp~---~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+.+.|+.-.+ ..-+++++.|++. ..+|+++-.+-.+.++..+++..|++..+.
T Consensus 46 ~l~v~Dl~~~~~~~~~n~~~i~~i~~~---~~~pv~~~GGi~s~~d~~~~~~~Ga~~viv 102 (254)
T TIGR00735 46 ELVFLDITASSEGRTTMIDVVERTAET---VFIPLTVGGGIKSIEDVDKLLRAGADKVSI 102 (254)
T ss_pred EEEEEcCCcccccChhhHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 47788886443 2345667777764 368999988999999999999999987653
No 331
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=50.51 E-value=1.4e+02 Score=27.62 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=25.3
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 178 EVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 178 ~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
.+|||+=.+-....+..+|+.+||+..+
T Consensus 352 ~~~viadgGir~~gdi~KAla~GA~~vm 379 (502)
T PRK07107 352 YIPICSDGGIVYDYHMTLALAMGADFIM 379 (502)
T ss_pred cceEEEcCCCCchhHHHHHHHcCCCeee
Confidence 4899999999999999999999999864
No 332
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=50.40 E-value=77 Score=25.50 Aligned_cols=93 Identities=23% Similarity=0.310 Sum_probs=59.1
Q ss_pred eCCHHHHHHHHHHHhhc-CCEEEE------EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CCHHHHHHHHH
Q 048660 100 DDSYVDRKLIERLLQIS-SCKVTA------VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MTGYELLKKIK 171 (213)
Q Consensus 100 dD~~~~~~~l~~~L~~~-g~~v~~------a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~G~e~~~~ir 171 (213)
+|.......++.+++.. |+.++. +.+..+|++.+. ...++-||+.=.-+. .+|++.++.+.
T Consensus 96 ~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~-----------~lG~~rVLTSGg~~~a~~g~~~L~~lv 164 (201)
T PF03932_consen 96 EDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLI-----------ELGFDRVLTSGGAPTALEGIENLKELV 164 (201)
T ss_dssp TTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHH-----------HHT-SEEEESTTSSSTTTCHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHH-----------hcCCCEEECCCCCCCHHHHHHHHHHHH
Confidence 56677788888888743 666665 457888998884 335888998876643 68999999887
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHH-cCCCeee
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLE-EGAEEYI 205 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~-~G~~~~L 205 (213)
+.. ...+- |+..+--..+......+ .|+..|-
T Consensus 165 ~~a-~~~i~-Im~GgGv~~~nv~~l~~~tg~~~~H 197 (201)
T PF03932_consen 165 EQA-KGRIE-IMPGGGVRAENVPELVEETGVREIH 197 (201)
T ss_dssp HHH-TTSSE-EEEESS--TTTHHHHHHHHT-SEEE
T ss_pred HHc-CCCcE-EEecCCCCHHHHHHHHHhhCCeEEe
Confidence 653 23333 44444444555555555 8888764
No 333
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.29 E-value=95 Score=22.48 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=42.7
Q ss_pred ceeEEEEeCCC-CCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCC
Q 048660 148 KVNLIITDYTM-PGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208 (213)
Q Consensus 148 ~~dlil~D~~m-p~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP 208 (213)
..++|-++.-- -+.-|+..++.||+...+. --|--++.--.+...-..++|+|.|..+.
T Consensus 19 ~l~lI~i~FP~F~DGRgfS~ArlLR~r~gy~--GelRA~Gdvl~DQl~~l~R~GFdsf~l~~ 78 (110)
T PF06073_consen 19 RLPLIAIDFPKFTDGRGFSQARLLRERYGYT--GELRAVGDVLRDQLFYLRRCGFDSFELRE 78 (110)
T ss_pred CCCEEEEECCCcCCchHhHHHHHHHHHcCCC--CcEEEeccchHHHHHHHHHcCCCEEEeCC
Confidence 34666666622 2456899999999654333 34667788888888999999999998774
No 334
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=49.57 E-value=1.1e+02 Score=24.47 Aligned_cols=87 Identities=9% Similarity=-0.028 Sum_probs=50.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
.+.+|||..-...+...+...|.+.|+.|..+....+.++.+...... .......+.+|+.-+. +-..+++.+.
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~-~~~~~~~~~~ 83 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRA-----AGGAAEALAFDIADEE-AVAAAFARID 83 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh-----cCCceEEEEccCCCHH-HHHHHHHHHH
Confidence 356899999998889988888888899888765433333322111000 1123566667764322 2234566666
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
.. ...+-+++..+
T Consensus 84 ~~--~~~id~vi~~a 96 (256)
T PRK06124 84 AE--HGRLDILVNNV 96 (256)
T ss_pred Hh--cCCCCEEEECC
Confidence 54 33455555544
No 335
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=49.42 E-value=1.3e+02 Score=24.38 Aligned_cols=89 Identities=16% Similarity=0.186 Sum_probs=58.3
Q ss_pred HHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHH-------HHHHHhcCCCCC
Q 048660 106 RKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYEL-------LKKIKESSVFRE 178 (213)
Q Consensus 106 ~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~-------~~~ir~~~~~~~ 178 (213)
...+.+.+++.|..+..+-+...-++.+..+ ....|++|+=..-|+..|-.+ .+.||+. +++
T Consensus 101 ~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~---------~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~k--yp~ 169 (224)
T KOG3111|consen 101 PAELVEKIREKGMKVGLALKPGTPVEDLEPL---------AEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREK--YPN 169 (224)
T ss_pred HHHHHHHHHHcCCeeeEEeCCCCcHHHHHHh---------hccccEEEEEEecCCCchhhhHHHHHHHHHHHHHh--CCC
Confidence 3456677777888888775433333333211 125788888777898877655 4566755 444
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 179 VPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 179 ~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..|=+-+.-..+.+.++.++||+-.+.
T Consensus 170 -l~ievDGGv~~~ti~~~a~AGAN~iVa 196 (224)
T KOG3111|consen 170 -LDIEVDGGVGPSTIDKAAEAGANMIVA 196 (224)
T ss_pred -ceEEecCCcCcchHHHHHHcCCCEEEe
Confidence 345566777788899999999986553
No 336
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=49.37 E-value=86 Score=23.95 Aligned_cols=86 Identities=15% Similarity=0.224 Sum_probs=43.3
Q ss_pred cEEEEEeCCHHHH-----------HHHHHHHhhc---CCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC
Q 048660 94 LHVLAVDDSYVDR-----------KLIERLLQIS---SCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM 158 (213)
Q Consensus 94 ~~ILvVdD~~~~~-----------~~l~~~L~~~---g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m 158 (213)
++|+++.|+-... ..+.+.|.+. ++.+. ...+|...-+.+..... ....+||+|++-+..
T Consensus 3 ~~i~~~GDSit~G~g~~~~~~~~~~~l~~~l~~~~~~~~~~~n~g~~G~t~~~~~~~l~~-----~~~~~pd~Vii~~G~ 77 (191)
T cd01836 3 LRLLVLGDSTAAGVGVETQDQALAGQLARGLAAITGRGVRWRLFAKTGATSADLLRQLAP-----LPETRFDVAVISIGV 77 (191)
T ss_pred eEEEEEeccccccccccchhccHHHHHHHHHHHhhCCceEEEEEecCCcCHHHHHHHHHh-----cccCCCCEEEEEecc
Confidence 5677777664333 2245555432 34433 34445444333321110 135689999984433
Q ss_pred CCC----C-------HHHHHHHHHhcCCCCCCcEEEEec
Q 048660 159 PGM----T-------GYELLKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 159 p~~----~-------G~e~~~~ir~~~~~~~~pII~lt~ 186 (213)
-+. + =.++++.+++. .+.++|++++.
T Consensus 78 ND~~~~~~~~~~~~~l~~li~~i~~~--~~~~~iiv~~~ 114 (191)
T cd01836 78 NDVTHLTSIARWRKQLAELVDALRAK--FPGARVVVTAV 114 (191)
T ss_pred cCcCCCCCHHHHHHHHHHHHHHHHhh--CCCCEEEEECC
Confidence 221 1 12245555553 46788888764
No 337
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=49.33 E-value=2e+02 Score=25.95 Aligned_cols=86 Identities=21% Similarity=0.140 Sum_probs=43.2
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHhhcCCEEEEEcC---HH----HHHHHhhhcCCCCCCCCCCCceeEEEEeCCC--C
Q 048660 92 KELHVLAVDDSYV---DRKLIERLLQISSCKVTAVES---GT----RALQYLGLDGEQSNVGFDALKVNLIITDYTM--P 159 (213)
Q Consensus 92 ~~~~ILvVdD~~~---~~~~l~~~L~~~g~~v~~a~~---g~----eal~~l~~~~~~~~~~~~~~~~dlil~D~~m--p 159 (213)
.+.+|++|+-|.. ....+..+-.+.|..+..+.. .. ++++.+ ....+|+||+|..= +
T Consensus 127 ~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~-----------~~~~~DvVIIDTaGr~~ 195 (428)
T TIGR00959 127 QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYA-----------KENGFDVVIVDTAGRLQ 195 (428)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHH-----------HhcCCCEEEEeCCCccc
Confidence 3568999988742 233344444455655554432 22 233333 23468999999831 1
Q ss_pred -CCCHHHHHHHHHhcCCCCCCcEEEEecCCC
Q 048660 160 -GMTGYELLKKIKESSVFREVPVVIMSSEDV 189 (213)
Q Consensus 160 -~~~G~e~~~~ir~~~~~~~~pII~lt~~~~ 189 (213)
+....+-+..+.... .+.-.++++.+...
T Consensus 196 ~d~~l~~eL~~i~~~~-~p~e~lLVvda~tg 225 (428)
T TIGR00959 196 IDEELMEELAAIKEIL-NPDEILLVVDAMTG 225 (428)
T ss_pred cCHHHHHHHHHHHHhh-CCceEEEEEeccch
Confidence 112333344444322 24444566655443
No 338
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=49.29 E-value=1.1e+02 Score=24.99 Aligned_cols=53 Identities=15% Similarity=0.119 Sum_probs=37.7
Q ss_pred eEEEEeCCCCCC-CH--HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 150 NLIITDYTMPGM-TG--YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 150 dlil~D~~mp~~-~G--~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+|++|+.--++ .| +++++.+++. ..++++--+-.+.++..++.+.|+++.+.
T Consensus 162 ~ii~tdI~~dGt~~G~d~el~~~~~~~----~~~viasGGv~s~~Dl~~l~~~G~~gviv 217 (232)
T PRK13586 162 GIIFTYISNEGTTKGIDYNVKDYARLI----RGLKEYAGGVSSDADLEYLKNVGFDYIIV 217 (232)
T ss_pred EEEEecccccccCcCcCHHHHHHHHhC----CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 699999977664 44 4567777653 23466655566778888889999998754
No 339
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=49.18 E-value=89 Score=27.71 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=41.4
Q ss_pred cEEEEEeCCHHH----HHHHHHHHhhcCCEEEEEc---------CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC
Q 048660 94 LHVLAVDDSYVD----RKLIERLLQISSCKVTAVE---------SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG 160 (213)
Q Consensus 94 ~~ILvVdD~~~~----~~~l~~~L~~~g~~v~~a~---------~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~ 160 (213)
.++|||.|.... .+.+...|++.|..+.... ...++.+.+ ++..+|+|| ...+
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~-----------r~~~~D~Ii---avGG 115 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQL-----------RESGCDGVI---AFGG 115 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHH-----------HhcCcCEEE---EeCC
Confidence 578888775332 2457778888887665542 234555555 455789888 3567
Q ss_pred CCHHHHHHHHH
Q 048660 161 MTGYELLKKIK 171 (213)
Q Consensus 161 ~~G~e~~~~ir 171 (213)
.+-+++++.+.
T Consensus 116 GS~iD~AKaia 126 (395)
T PRK15454 116 GSVLDAAKAVA 126 (395)
T ss_pred hHHHHHHHHHH
Confidence 77777776653
No 340
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=49.05 E-value=63 Score=28.01 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=0.0
Q ss_pred eeEEEEeCCCCC-CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 149 VNLIITDYTMPG-MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 149 ~dlil~D~~mp~-~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.|+|++|..... ...++.++.||+ ....|.|+.-.-...+....+.++|++.+..
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~---~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V 164 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKT---HLPDSFVIAGNVGTPEAVRELENAGADATKV 164 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHH---hCCCCEEEEecCCCHHHHHHHHHcCcCEEEE
No 341
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=48.99 E-value=1.1e+02 Score=24.60 Aligned_cols=52 Identities=6% Similarity=0.116 Sum_probs=32.3
Q ss_pred EEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 153 ITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 153 l~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
++.+.+-.-++.+.++.+++.. +..-+|-...--..++...+.++|++-.++
T Consensus 38 ~iEvt~~~~~~~~~i~~l~~~~--~~~~~iGaGTV~~~~~~~~a~~aGA~fivs 89 (206)
T PRK09140 38 AIEIPLNSPDPFDSIAALVKAL--GDRALIGAGTVLSPEQVDRLADAGGRLIVT 89 (206)
T ss_pred EEEEeCCCccHHHHHHHHHHHc--CCCcEEeEEecCCHHHHHHHHHcCCCEEEC
Confidence 3344444556788888888753 322234444455677888899999955444
No 342
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=48.84 E-value=1.4e+02 Score=26.16 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=41.0
Q ss_pred cEEEEEeCCHHH----HHHHHHHHhhcCCEEEEEcC---------HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC
Q 048660 94 LHVLAVDDSYVD----RKLIERLLQISSCKVTAVES---------GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG 160 (213)
Q Consensus 94 ~~ILvVdD~~~~----~~~l~~~L~~~g~~v~~a~~---------g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~ 160 (213)
.|+|||.|.... .+.+...|+..|..+..+.. .+++.+.+ +...+|+|| ...+
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~-----------~~~~~D~II---avGG 94 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVF-----------KKEGCDFII---SIGG 94 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHH-----------HhcCCCEEE---EeCC
Confidence 489999876543 34577788877877665543 23344444 345688887 3467
Q ss_pred CCHHHHHHHHH
Q 048660 161 MTGYELLKKIK 171 (213)
Q Consensus 161 ~~G~e~~~~ir 171 (213)
.+.+++++.+.
T Consensus 95 GS~iD~aK~ia 105 (377)
T cd08176 95 GSPHDCAKAIG 105 (377)
T ss_pred cHHHHHHHHHH
Confidence 77777777664
No 343
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=48.06 E-value=44 Score=28.36 Aligned_cols=41 Identities=12% Similarity=0.107 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
++.+.++++.. .+++|||...+-.+.++..+++.+||+...
T Consensus 239 l~~v~~~~~~~-~~~ipIig~GGI~~~~da~~~l~aGA~~V~ 279 (299)
T cd02940 239 LRAVSQIARAP-EPGLPISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred HHHHHHHHHhc-CCCCcEEEECCCCCHHHHHHHHHcCCChhe
Confidence 67788887752 247999999999999999999999998764
No 344
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=48.06 E-value=1.7e+02 Score=26.48 Aligned_cols=98 Identities=8% Similarity=0.046 Sum_probs=48.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHH----hhcCCEEEEEcCHH-------HHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC
Q 048660 93 ELHVLAVDDSYVDRKLIERLL----QISSCKVTAVESGT-------RALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM 161 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L----~~~g~~v~~a~~g~-------eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~ 161 (213)
+.+|++|+-|..- ......| +..+..+....++. ++++.+ ....+|+||+|.. +.
T Consensus 128 G~kV~lV~~D~~R-~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~-----------~~~~~DvViIDTa--Gr 193 (429)
T TIGR01425 128 GFKPCLVCADTFR-AGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF-----------KKENFDIIIVDTS--GR 193 (429)
T ss_pred CCCEEEEcCcccc-hhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH-----------HhCCCCEEEEECC--CC
Confidence 5688988877533 2333333 33444444333322 344444 2346899999984 43
Q ss_pred C--HHHHHHHHHhcC--CCCCCcEEEEecCCC--HHHHHHHHH--cCCCee
Q 048660 162 T--GYELLKKIKESS--VFREVPVVIMSSEDV--LTQIDSCLE--EGAEEY 204 (213)
Q Consensus 162 ~--G~e~~~~ir~~~--~~~~~pII~lt~~~~--~~~~~~~~~--~G~~~~ 204 (213)
. --++.+++++.. ..+...++++.+... .....+++. .+.+++
T Consensus 194 ~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~ 244 (429)
T TIGR01425 194 HKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSV 244 (429)
T ss_pred CcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEE
Confidence 2 224555555421 134445666655432 122334443 355554
No 345
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=48.01 E-value=33 Score=23.75 Aligned_cols=53 Identities=17% Similarity=0.096 Sum_probs=22.3
Q ss_pred cEEEEEeCCH---HHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC
Q 048660 94 LHVLAVDDSY---VDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM 158 (213)
Q Consensus 94 ~~ILvVdD~~---~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m 158 (213)
.++..||..+ ..++.+++ ..-.+.......+..+.+..+. ...+|++++|-.-
T Consensus 24 ~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~~~~-----------~~~~dli~iDg~H 79 (106)
T PF13578_consen 24 GKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFLPSLP-----------DGPIDLIFIDGDH 79 (106)
T ss_dssp ---EEEESS-------------GGG-BTEEEEES-THHHHHHHH-----------H--EEEEEEES--
T ss_pred CCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHHHHcC-----------CCCEEEEEECCCC
Confidence 4789999988 45555554 1111223334455566676662 2479999999743
No 346
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=47.95 E-value=48 Score=26.32 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=53.0
Q ss_pred ccEEEEEeCC---HHHHHHHHHHHhhcCCEEEEEcCH---H----HHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC
Q 048660 93 ELHVLAVDDS---YVDRKLIERLLQISSCKVTAVESG---T----RALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT 162 (213)
Q Consensus 93 ~~~ILvVdD~---~~~~~~l~~~L~~~g~~v~~a~~g---~----eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~ 162 (213)
+.+|.+|--| .--.+.|+.+-+..|..+..+... . ++++.. ....+|+||+|. |+.+
T Consensus 29 ~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~-----------~~~~~D~vlIDT--~Gr~ 95 (196)
T PF00448_consen 29 GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF-----------RKKGYDLVLIDT--AGRS 95 (196)
T ss_dssp T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH-----------HHTTSSEEEEEE---SSS
T ss_pred cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH-----------hhcCCCEEEEec--CCcc
Confidence 3456555433 245566777777788777766532 2 233333 234689999998 5543
Q ss_pred --HHHHHHHHHh---cCCCCCCcEEEEecCCCHHHHH---HHHH-cCCCee
Q 048660 163 --GYELLKKIKE---SSVFREVPVVIMSSEDVLTQID---SCLE-EGAEEY 204 (213)
Q Consensus 163 --G~e~~~~ir~---~~~~~~~pII~lt~~~~~~~~~---~~~~-~G~~~~ 204 (213)
-.+.++++++ .. .+.-.++++++....+... ...+ .+.+++
T Consensus 96 ~~d~~~~~el~~~~~~~-~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~l 145 (196)
T PF00448_consen 96 PRDEELLEELKKLLEAL-NPDEVHLVLSATMGQEDLEQALAFYEAFGIDGL 145 (196)
T ss_dssp STHHHHHHHHHHHHHHH-SSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEE
T ss_pred hhhHHHHHHHHHHhhhc-CCccceEEEecccChHHHHHHHHHhhcccCceE
Confidence 2334444443 21 3445677777776655533 3333 356654
No 347
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=47.88 E-value=72 Score=25.04 Aligned_cols=32 Identities=9% Similarity=0.107 Sum_probs=27.4
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHH
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGT 127 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~ 127 (213)
|+|||-.--+-..+.+.|++.|+.+....+..
T Consensus 1 i~i~d~g~~~~~~~~~~l~~~g~~v~v~~~~~ 32 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPE 32 (198)
T ss_pred CEEEeCCCChHHHHHHHHHHCCCeEEEEcChH
Confidence 57888888888899999999999999888754
No 348
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=47.83 E-value=1.8e+02 Score=25.00 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=53.4
Q ss_pred HHHHHhhcCCEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC-CC-----CC-CHHHHHHHHHhcCCCCCCc
Q 048660 109 IERLLQISSCKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT-MP-----GM-TGYELLKKIKESSVFREVP 180 (213)
Q Consensus 109 l~~~L~~~g~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~-mp-----~~-~G~e~~~~ir~~~~~~~~p 180 (213)
+...++..|..+ ..+.+.++|...++. .+|.|++-=. -. .. +-+.++..+++. -++|
T Consensus 128 ~i~~l~~~gi~v~~~v~s~~~A~~a~~~------------G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~---~~iP 192 (330)
T PF03060_consen 128 VIERLHAAGIKVIPQVTSVREARKAAKA------------GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDA---VDIP 192 (330)
T ss_dssp HHHHHHHTT-EEEEEESSHHHHHHHHHT------------T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH----SS-
T ss_pred HHHHHHHcCCccccccCCHHHHHHhhhc------------CCCEEEEeccccCCCCCccccceeeHHHHHhhh---cCCc
Confidence 345577778755 478999999887642 4677776532 11 12 357778888875 3599
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeee
Q 048660 181 VVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 181 II~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
||+--+-.+......++..|+++..
T Consensus 193 ViaAGGI~dg~~iaaal~lGA~gV~ 217 (330)
T PF03060_consen 193 VIAAGGIADGRGIAAALALGADGVQ 217 (330)
T ss_dssp EEEESS--SHHHHHHHHHCT-SEEE
T ss_pred EEEecCcCCHHHHHHHHHcCCCEee
Confidence 9998888899999999999999875
No 349
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=47.80 E-value=78 Score=27.36 Aligned_cols=63 Identities=16% Similarity=0.343 Sum_probs=38.0
Q ss_pred CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcC
Q 048660 125 SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEG 200 (213)
Q Consensus 125 ~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G 200 (213)
|..||+..+.... .+.-|+|.+- |.+.=+++++.+|+. .+++|+.++--...-.....+-+.|
T Consensus 223 n~~eAlre~~~D~--------~EGAD~lMVK---Pal~YLDIi~~~k~~--~~~~PvaaYqVSGEYaMikaAa~~G 285 (320)
T cd04824 223 ARGLALRAVERDV--------SEGADMIMVK---PGTPYLDIVREAKDK--HPDLPLAVYHVSGEYAMLHAAAEAG 285 (320)
T ss_pred CHHHHHHHHHhhH--------HhCCCEEEEc---CCchHHHHHHHHHHh--ccCCCEEEEEccHHHHHHHHHHHcC
Confidence 5566666543321 2234666655 777778889999986 5689999985543333333333333
No 350
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=47.73 E-value=80 Score=25.85 Aligned_cols=96 Identities=19% Similarity=0.167 Sum_probs=58.2
Q ss_pred EEeCCHHHHHHHHHHHhhcCCEEEEEcCH---HHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHH----HHHH
Q 048660 98 AVDDSYVDRKLIERLLQISSCKVTAVESG---TRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYEL----LKKI 170 (213)
Q Consensus 98 vVdD~~~~~~~l~~~L~~~g~~v~~a~~g---~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~----~~~i 170 (213)
=+|+.+... .+-..+++.|.....+=|. -++++.+- ...|+|++=..-|+..|-.+ +.+|
T Consensus 91 H~E~~~~~~-r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l------------~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki 157 (220)
T COG0036 91 HAEATEHIH-RTIQLIKELGVKAGLVLNPATPLEALEPVL------------DDVDLVLLMSVNPGFGGQKFIPEVLEKI 157 (220)
T ss_pred EeccCcCHH-HHHHHHHHcCCeEEEEECCCCCHHHHHHHH------------hhCCEEEEEeECCCCcccccCHHHHHHH
Confidence 345443333 3444556678777666443 33444331 25688887777788766433 3344
Q ss_pred H---hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 171 K---ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 171 r---~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
| +......-..|-+-+.-+.+....+..+|+|-++.
T Consensus 158 ~~lr~~~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~Va 196 (220)
T COG0036 158 RELRAMIDERLDILIEVDGGINLETIKQLAAAGADVFVA 196 (220)
T ss_pred HHHHHHhcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 4 32111114567788888899999999999998764
No 351
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=47.68 E-value=1.5e+02 Score=25.64 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
++.++++++. .+++|||+..+-.+.++..++++ |+|++.
T Consensus 193 ~~~i~~v~~~--~~~iPVI~nGgI~s~eda~~~l~-~aDgVm 231 (333)
T PRK11815 193 YDRVYRLKRD--FPHLTIEINGGIKTLEEAKEHLQ-HVDGVM 231 (333)
T ss_pred HHHHHHHHHh--CCCCeEEEECCcCCHHHHHHHHh-cCCEEE
Confidence 6788888864 35799998888888898888886 687753
No 352
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=47.65 E-value=95 Score=25.65 Aligned_cols=93 Identities=17% Similarity=0.246 Sum_probs=60.7
Q ss_pred HHHHHHHhhcCCEE--EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC-----CCCCHHHHHHHHHhcCCCCCC
Q 048660 107 KLIERLLQISSCKV--TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM-----PGMTGYELLKKIKESSVFREV 179 (213)
Q Consensus 107 ~~l~~~L~~~g~~v--~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m-----p~~~G~e~~~~ir~~~~~~~~ 179 (213)
..+-..|++.|+.+ .-+..|...+.++ ...+||.|=+|-.. .+.....+++.|-.....-.+
T Consensus 139 ~~~l~~L~~~G~~ialDDFGtG~ssl~~L-----------~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~ 207 (256)
T COG2200 139 LALLRQLRELGVRIALDDFGTGYSSLSYL-----------KRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGL 207 (256)
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHH-----------hhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCC
Confidence 33445567788755 4578899999998 55678988888643 223344566666543223344
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCe----eeeCCCCC
Q 048660 180 PVVIMSSEDVLTQIDSCLEEGAEE----YIVKPVKL 211 (213)
Q Consensus 180 pII~lt~~~~~~~~~~~~~~G~~~----~L~KP~~~ 211 (213)
.+| .-+-.+.+....+.+.|++. |+.||...
T Consensus 208 ~vv-aEGVEt~~ql~~L~~~G~~~~QGylf~~P~~~ 242 (256)
T COG2200 208 TVV-AEGVETEEQLDLLRELGCDYLQGYLFSRPLPA 242 (256)
T ss_pred EEE-EeecCCHHHHHHHHHcCCCeEeeccccCCCCH
Confidence 444 55566778888899999863 47788653
No 353
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=47.56 E-value=31 Score=32.06 Aligned_cols=32 Identities=13% Similarity=0.071 Sum_probs=28.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcC
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVES 125 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~ 125 (213)
.+|||||....+-..+.++|+..|+.+.+..+
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~ 33 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRN 33 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEEC
Confidence 37999999999999999999999988877664
No 354
>PRK07035 short chain dehydrogenase; Provisional
Probab=47.50 E-value=1.4e+02 Score=23.73 Aligned_cols=85 Identities=14% Similarity=0.092 Sum_probs=47.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHH-HHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYE-LLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e-~~~~ir 171 (213)
..+|||..-...+...+.+.|.+.|++|..+....+.++.+...... ....+..+-+|+ -+.+..+ +++.+.
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~--~~~~~~~~~~~~~~ 80 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVA-----AGGKAEALACHI--GEMEQIDALFAHIR 80 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCeEEEEEcCC--CCHHHHHHHHHHHH
Confidence 35799999999999999999988999887665433333332211000 011223334444 4444333 555665
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+. ...+-+++..+
T Consensus 81 ~~--~~~id~li~~a 93 (252)
T PRK07035 81 ER--HGRLDILVNNA 93 (252)
T ss_pred HH--cCCCCEEEECC
Confidence 54 34455666544
No 355
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=47.20 E-value=1.4e+02 Score=24.23 Aligned_cols=54 Identities=17% Similarity=0.386 Sum_probs=34.8
Q ss_pred eeEE-EEeCCCCCCCHH-------HHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 149 VNLI-ITDYTMPGMTGY-------ELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 149 ~dli-l~D~~mp~~~G~-------e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.|.| +|.++ |+.+|- +-++++|+. .+. -.|.+.+.-+.+....+.++|+|.++.
T Consensus 139 vD~Vl~m~v~-pG~~gq~~~~~~~~ki~~~~~~--~~~-~~I~VdGGI~~~ti~~~~~aGad~iVv 200 (228)
T PTZ00170 139 VDMVLVMTVE-PGFGGQSFMHDMMPKVRELRKR--YPH-LNIQVDGGINLETIDIAADAGANVIVA 200 (228)
T ss_pred hhhHHhhhcc-cCCCCcEecHHHHHHHHHHHHh--ccc-CeEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 4544 44443 665544 334555553 223 347788888899999999999987643
No 356
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=47.20 E-value=1.1e+02 Score=24.72 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCC
Q 048660 160 GMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209 (213)
Q Consensus 160 ~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~ 209 (213)
.-+.++.++.+++. .++ -+|-.-.--+.++.+++.++|+ +|+.-|.
T Consensus 39 tp~a~~~I~~l~~~--~~~-~~vGAGTVl~~e~a~~ai~aGA-~FivSP~ 84 (201)
T PRK06015 39 TPAALDAIRAVAAE--VEE-AIVGAGTILNAKQFEDAAKAGS-RFIVSPG 84 (201)
T ss_pred CccHHHHHHHHHHH--CCC-CEEeeEeCcCHHHHHHHHHcCC-CEEECCC
Confidence 33466666666654 233 2344444455667777777777 3554443
No 357
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=46.88 E-value=1.5e+02 Score=23.84 Aligned_cols=45 Identities=13% Similarity=0.305 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCC
Q 048660 161 MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209 (213)
Q Consensus 161 ~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~ 209 (213)
-+.++.++.+++. .+++ +|..-.-.+.++.+++.++|++ |+.-|.
T Consensus 44 ~~a~~~i~~l~~~--~~~~-~vGAGTVl~~~~a~~a~~aGA~-FivsP~ 88 (204)
T TIGR01182 44 PVALDAIRLLRKE--VPDA-LIGAGTVLNPEQLRQAVDAGAQ-FIVSPG 88 (204)
T ss_pred ccHHHHHHHHHHH--CCCC-EEEEEeCCCHHHHHHHHHcCCC-EEECCC
Confidence 3477777777765 3442 3334444567777888888884 554453
No 358
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=46.68 E-value=51 Score=26.34 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=43.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCE-EE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCK-VT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~-v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
...+|.-+|-++...+..++.++..|+. +. ...|+.+.. .....||+|+++...+... -.+.+.
T Consensus 100 ~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~-------------~~~~~fD~I~~~~~~~~~~-~~l~~~ 165 (212)
T PRK13942 100 KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY-------------EENAPYDRIYVTAAGPDIP-KPLIEQ 165 (212)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-------------CcCCCcCEEEECCCcccch-HHHHHh
Confidence 3458999999999999999999988763 33 223332211 0235799999998766543 234444
Q ss_pred HH
Q 048660 170 IK 171 (213)
Q Consensus 170 ir 171 (213)
|+
T Consensus 166 Lk 167 (212)
T PRK13942 166 LK 167 (212)
T ss_pred hC
Confidence 44
No 359
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=46.52 E-value=1.2e+02 Score=25.51 Aligned_cols=93 Identities=22% Similarity=0.181 Sum_probs=55.7
Q ss_pred EEEEEeCCHHHHH----HHHHHHhhcC--C-EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHH
Q 048660 95 HVLAVDDSYVDRK----LIERLLQISS--C-KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELL 167 (213)
Q Consensus 95 ~ILvVdD~~~~~~----~l~~~L~~~g--~-~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~ 167 (213)
.||+-|++-...- .+...-+..+ . ....+.+.+|+.+.+. ..+|.|.+|-.-|+ +--++.
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~------------~gaD~I~ld~~~~e-~l~~~v 219 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALE------------AGADIIMLDNMSPE-ELKEAV 219 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHH------------cCCCEEEECCCCHH-HHHHHH
Confidence 4677776643332 2233333334 2 3457789999988873 24799999864441 111123
Q ss_pred HHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 168 KKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 168 ~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
+.+++ .+++| |..++.-+.+......++|+|.+
T Consensus 220 ~~i~~---~~~i~-i~asGGIt~~ni~~~a~~Gad~I 252 (269)
T cd01568 220 KLLKG---LPRVL-LEASGGITLENIRAYAETGVDVI 252 (269)
T ss_pred HHhcc---CCCeE-EEEECCCCHHHHHHHHHcCCCEE
Confidence 33332 13566 45667777889999999999876
No 360
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=46.47 E-value=2.2e+02 Score=25.48 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=10.9
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCC
Q 048660 178 EVPVVIMSSEDVLTQIDSCLEEGA 201 (213)
Q Consensus 178 ~~pII~lt~~~~~~~~~~~~~~G~ 201 (213)
++-|-++-..-.......|+++|.
T Consensus 70 d~VIn~~p~~~~~~i~ka~i~~gv 93 (389)
T COG1748 70 DLVINAAPPFVDLTILKACIKTGV 93 (389)
T ss_pred CEEEEeCCchhhHHHHHHHHHhCC
Confidence 333333333444444455555555
No 361
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=46.47 E-value=1.5e+02 Score=23.70 Aligned_cols=97 Identities=20% Similarity=0.264 Sum_probs=57.3
Q ss_pred ccEEEEEeCCH----HHHHHHHHHHhhcCCEEE--EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC------CCCC
Q 048660 93 ELHVLAVDDSY----VDRKLIERLLQISSCKVT--AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY------TMPG 160 (213)
Q Consensus 93 ~~~ILvVdD~~----~~~~~l~~~L~~~g~~v~--~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~------~mp~ 160 (213)
+..|+-+|--. .....+-..++..+ ... -+.+.+|++...+ ..+|+|=.-+ ....
T Consensus 64 GadIIAlDaT~R~Rp~~l~~li~~i~~~~-~l~MADist~ee~~~A~~------------~G~D~I~TTLsGYT~~t~~~ 130 (192)
T PF04131_consen 64 GADIIALDATDRPRPETLEELIREIKEKY-QLVMADISTLEEAINAAE------------LGFDIIGTTLSGYTPYTKGD 130 (192)
T ss_dssp T-SEEEEE-SSSS-SS-HHHHHHHHHHCT-SEEEEE-SSHHHHHHHHH------------TT-SEEE-TTTTSSTTSTTS
T ss_pred CCCEEEEecCCCCCCcCHHHHHHHHHHhC-cEEeeecCCHHHHHHHHH------------cCCCEEEcccccCCCCCCCC
Confidence 34566666321 12233333344444 333 4578888888763 2477775533 1123
Q ss_pred CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 161 MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 161 ~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
...+++++++.+. .+|+|+=....+++...+++++|++..+.
T Consensus 131 ~pD~~lv~~l~~~----~~pvIaEGri~tpe~a~~al~~GA~aVVV 172 (192)
T PF04131_consen 131 GPDFELVRELVQA----DVPVIAEGRIHTPEQAAKALELGAHAVVV 172 (192)
T ss_dssp SHHHHHHHHHHHT----TSEEEEESS--SHHHHHHHHHTT-SEEEE
T ss_pred CCCHHHHHHHHhC----CCcEeecCCCCCHHHHHHHHhcCCeEEEE
Confidence 4578899999873 68888888888999999999999988753
No 362
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=46.09 E-value=1.4e+02 Score=23.21 Aligned_cols=102 Identities=13% Similarity=0.130 Sum_probs=59.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCC-EEEEE-cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSC-KVTAV-ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~-~v~~a-~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
...+|..||-++.....++..+++.|. .+... .+..+ + . ....||+|+++. +... .++.+.
T Consensus 65 ~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~-~--~-----------~~~~fD~I~s~~-~~~~--~~~~~~ 127 (181)
T TIGR00138 65 PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAED-F--Q-----------HEEQFDVITSRA-LASL--NVLLEL 127 (181)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhh-c--c-----------ccCCccEEEehh-hhCH--HHHHHH
Confidence 346799999999888888888887775 34332 33332 1 1 234799999986 3332 234455
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHc----CCCeeeeCCCCC
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEE----GAEEYIVKPVKL 211 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~----G~~~~L~KP~~~ 211 (213)
+++.- .+.-.+++.-+...........+. |..-.=.||++.
T Consensus 128 ~~~~L-kpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 172 (181)
T TIGR00138 128 TLNLL-KVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTG 172 (181)
T ss_pred HHHhc-CCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCC
Confidence 44422 244456666665555554444443 765444555543
No 363
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=45.88 E-value=1.8e+02 Score=24.39 Aligned_cols=91 Identities=19% Similarity=0.116 Sum_probs=56.4
Q ss_pred EEEEEeCCHHHHHH----HHHHHhhcC---CEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHH
Q 048660 95 HVLAVDDSYVDRKL----IERLLQISS---CKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELL 167 (213)
Q Consensus 95 ~ILvVdD~~~~~~~----l~~~L~~~g---~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~ 167 (213)
.||+.|++-...-. +..+-+..+ ...+.+.+.+++.+.+. ...|.|.+|-. +.+.+
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~------------~gaDyI~ld~~-----~~e~l 216 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALE------------AGADIIMLDNM-----SPEEL 216 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHH------------cCCCEEEECCc-----CHHHH
Confidence 57777776443322 222222333 23467889999888863 24799999843 24555
Q ss_pred HHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 168 KKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 168 ~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
+++.+.. ..++|++ .++.-+.+......+.|+|.+
T Consensus 217 ~~~~~~~-~~~ipi~-AiGGI~~~ni~~~a~~Gvd~I 251 (268)
T cd01572 217 REAVALL-KGRVLLE-ASGGITLENIRAYAETGVDYI 251 (268)
T ss_pred HHHHHHc-CCCCcEE-EECCCCHHHHHHHHHcCCCEE
Confidence 5555431 1257755 455556888889999999875
No 364
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=45.85 E-value=1.7e+02 Score=24.60 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=26.5
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 178 EVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 178 ~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
++-+|+.......+...+++++|..-++-||+...
T Consensus 69 D~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t 103 (342)
T COG0673 69 DAVYIATPNALHAELALAALEAGKHVLCEKPLALT 103 (342)
T ss_pred CEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCC
Confidence 44455455556778889999999999999998753
No 365
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=45.64 E-value=2e+02 Score=25.65 Aligned_cols=92 Identities=18% Similarity=0.199 Sum_probs=51.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC--CHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM--TGYELLKKI 170 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~--~G~e~~~~i 170 (213)
+.+|+|||-. ....+.+.|.+.|+.+..+.+...+ +.+ ....||.||+-=. |+- +-...++.+
T Consensus 192 ~~~I~viD~g--~k~ni~~~L~~~G~~v~vvp~~~~~-~~i-----------~~~~~dgIilSgG-Pg~p~~~~~~i~~i 256 (382)
T CHL00197 192 QLKIIVIDFG--VKYNILRRLKSFGCSITVVPATSPY-QDI-----------LSYQPDGILLSNG-PGDPSAIHYGIKTV 256 (382)
T ss_pred CCEEEEEECC--cHHHHHHHHHHCCCeEEEEcCCCCH-HHH-----------hccCCCEEEEcCC-CCChhHHHHHHHHH
Confidence 5799999995 3455888888889998887553322 222 1225787877421 111 111233444
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
++.- ....||+.+. .....-+...|+.-+
T Consensus 257 ~~~~-~~~~PilGIC----lGhQlLa~a~Gg~v~ 285 (382)
T CHL00197 257 KKLL-KYNIPIFGIC----MGHQILSLALEAKTF 285 (382)
T ss_pred HHHH-hCCCCEEEEc----HHHHHHHHHhCCEEe
Confidence 4321 1368998876 334444555665433
No 366
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=45.56 E-value=2.3e+02 Score=25.47 Aligned_cols=101 Identities=11% Similarity=0.194 Sum_probs=59.2
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHhhcC-CEE--EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC----
Q 048660 92 KELHVLAVDD----SYVDRKLIERLLQISS-CKV--TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG---- 160 (213)
Q Consensus 92 ~~~~ILvVdD----~~~~~~~l~~~L~~~g-~~v--~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~---- 160 (213)
.+..|+++|- +....+.++.+=++++ ..+ .-+.+.++|...+.. -.|.|..-+. |+
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a------------GaD~I~vG~g-~Gs~c~ 230 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV------------GADCLKVGIG-PGSICT 230 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc------------CCCEEEECCC-CCcCCc
Confidence 4567888774 2233333433333332 223 246778888877631 3566664331 11
Q ss_pred --------CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 161 --------MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 161 --------~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
...+.++..+++......+|||+=.+-....+..+++.+||+.+.
T Consensus 231 tr~~~g~g~p~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVm 283 (404)
T PRK06843 231 TRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVM 283 (404)
T ss_pred ceeecCCCCChHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 123444434443211246899998889999999999999999864
No 367
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=45.51 E-value=74 Score=26.75 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=17.6
Q ss_pred cEEEEEeCCHH---HHHHHHHHHhhcCCEEEEEcCHHHHHHHh
Q 048660 94 LHVLAVDDSYV---DRKLIERLLQISSCKVTAVESGTRALQYL 133 (213)
Q Consensus 94 ~~ILvVdD~~~---~~~~l~~~L~~~g~~v~~a~~g~eal~~l 133 (213)
.+|.+|+-|.. ....+..+-...|..+..+.+..+..+.+
T Consensus 225 ~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l 267 (282)
T TIGR03499 225 KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKAL 267 (282)
T ss_pred CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHH
Confidence 45666655542 12233333333444444455544444443
No 368
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=45.39 E-value=54 Score=26.78 Aligned_cols=87 Identities=15% Similarity=0.253 Sum_probs=50.2
Q ss_pred HHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHH-------HHHHHhcCCCCC-CcEE
Q 048660 111 RLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYEL-------LKKIKESSVFRE-VPVV 182 (213)
Q Consensus 111 ~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~-------~~~ir~~~~~~~-~pII 182 (213)
..+++.|..+..+=+...-++.+... -...|.|++=..-|+..|-.+ ++++|+...... -..|
T Consensus 104 ~~Ir~~g~k~GlalnP~T~~~~i~~~---------l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~I 174 (223)
T PRK08745 104 QLIKSHGCQAGLVLNPATPVDILDWV---------LPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRL 174 (223)
T ss_pred HHHHHCCCceeEEeCCCCCHHHHHHH---------HhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeE
Confidence 45556677666654433322222110 014577776666788655443 334443211111 2457
Q ss_pred EEecCCCHHHHHHHHHcCCCeeee
Q 048660 183 IMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 183 ~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
-+.+.-+.+....+.++|+|.++.
T Consensus 175 eVDGGI~~eti~~l~~aGaDi~V~ 198 (223)
T PRK08745 175 EIDGGVKADNIGAIAAAGADTFVA 198 (223)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEE
Confidence 788888999999999999997754
No 369
>PRK05867 short chain dehydrogenase; Provisional
Probab=45.26 E-value=1.6e+02 Score=23.58 Aligned_cols=86 Identities=13% Similarity=0.066 Sum_probs=47.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
+.++||..-..-+...+...|.+.|++|..+....+.++.+...... .......+.+|+.-++ +-.++++.+.+
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~D~~~~~-~~~~~~~~~~~ 82 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGT-----SGGKVVPVCCDVSQHQ-QVTSMLDQVTA 82 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh-----cCCeEEEEEccCCCHH-HHHHHHHHHHH
Confidence 45788989888888888888888899887665444444433211100 1112334455553222 22335555554
Q ss_pred cCCCCCCcEEEEec
Q 048660 173 SSVFREVPVVIMSS 186 (213)
Q Consensus 173 ~~~~~~~pII~lt~ 186 (213)
. ...+-+++..+
T Consensus 83 ~--~g~id~lv~~a 94 (253)
T PRK05867 83 E--LGGIDIAVCNA 94 (253)
T ss_pred H--hCCCCEEEECC
Confidence 4 23455666544
No 370
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=45.26 E-value=66 Score=28.39 Aligned_cols=80 Identities=15% Similarity=0.283 Sum_probs=47.4
Q ss_pred cEEEEEeCCHH----HHHHHHHHHhhcCCEEEE-------EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC
Q 048660 94 LHVLAVDDSYV----DRKLIERLLQISSCKVTA-------VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT 162 (213)
Q Consensus 94 ~~ILvVdD~~~----~~~~l~~~L~~~g~~v~~-------a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~ 162 (213)
.|+.+|..|-. .-+.++.+|+..|-.+.. .++-...++.+ ...+||+|+.-+ -+-+
T Consensus 135 ~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~plg~td~~~ii~~I-----------~~~~Pd~V~stl--vG~s 201 (363)
T PF13433_consen 135 KRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERYLPLGATDFDPIIAEI-----------KAAKPDFVFSTL--VGDS 201 (363)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S-HHHHHHHHHHH-----------HHHT-SEEEEE----TTC
T ss_pred ceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHH-----------HhhCCCEEEEeC--cCCc
Confidence 78999987743 345677777777776543 22334445555 345799999865 4667
Q ss_pred HHHHHHHHHhcCCCC-CCcEEEEec
Q 048660 163 GYELLKKIKESSVFR-EVPVVIMSS 186 (213)
Q Consensus 163 G~e~~~~ir~~~~~~-~~pII~lt~ 186 (213)
-..+.+++++.+..+ .+||+-+|-
T Consensus 202 ~~aF~r~~~~aG~~~~~~Pi~S~~~ 226 (363)
T PF13433_consen 202 NVAFYRAYAAAGLDPERIPIASLST 226 (363)
T ss_dssp HHHHHHHHHHHH-SSS---EEESS-
T ss_pred HHHHHHHHHHcCCCcccCeEEEEec
Confidence 889999999765444 377766543
No 371
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=45.25 E-value=1.8e+02 Score=24.33 Aligned_cols=63 Identities=16% Similarity=0.237 Sum_probs=39.2
Q ss_pred CceeEEEEeCCC---CCCC----HHHHHHHHHhcCCCCCCcEEEEecCC-C-----HHHHHHHHHcCCCe-eeeCCCCCC
Q 048660 147 LKVNLIITDYTM---PGMT----GYELLKKIKESSVFREVPVVIMSSED-V-----LTQIDSCLEEGAEE-YIVKPVKLS 212 (213)
Q Consensus 147 ~~~dlil~D~~m---p~~~----G~e~~~~ir~~~~~~~~pII~lt~~~-~-----~~~~~~~~~~G~~~-~L~KP~~~~ 212 (213)
...+++|+.... ++.. .+..+..+|+. .++||++=+++. . ......+...|+++ ++-|-++++
T Consensus 161 Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~---~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~pd 237 (266)
T PRK13398 161 GNENVVLCERGIRTFETYTRNTLDLAAVAVIKEL---SHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPEPE 237 (266)
T ss_pred CCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhc---cCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCCcc
Confidence 346788888733 3333 34455566653 368877734443 3 45677888999986 567766654
No 372
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=45.21 E-value=1.8e+02 Score=24.07 Aligned_cols=82 Identities=9% Similarity=-0.036 Sum_probs=51.1
Q ss_pred EEEEE--eCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC--CHHHHHHHH
Q 048660 95 HVLAV--DDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM--TGYELLKKI 170 (213)
Q Consensus 95 ~ILvV--dD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~--~G~e~~~~i 170 (213)
+|.++ .-.......+...|.+.|..+....+.......+... . .-|++|+ +...+. +..++++..
T Consensus 130 ~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~~--------~--~~Dv~I~-iS~sg~~~~~~~~~~~a 198 (278)
T PRK11557 130 RIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQAL--------S--PDDLLLA-ISYSGERRELNLAADEA 198 (278)
T ss_pred eEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHhC--------C--CCCEEEE-EcCCCCCHHHHHHHHHH
Confidence 45444 5667777888888888999888777765544433211 1 2344432 233443 345666666
Q ss_pred HhcCCCCCCcEEEEecCCCHH
Q 048660 171 KESSVFREVPVVIMSSEDVLT 191 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~ 191 (213)
++ ..++||++|+.....
T Consensus 199 k~----~ga~iI~IT~~~~s~ 215 (278)
T PRK11557 199 LR----VGAKVLAITGFTPNA 215 (278)
T ss_pred HH----cCCCEEEEcCCCCCc
Confidence 65 368999999976554
No 373
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=45.17 E-value=1.5e+02 Score=23.29 Aligned_cols=41 Identities=10% Similarity=-0.039 Sum_probs=31.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYL 133 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l 133 (213)
+.+|||..-...+...+.+.|.+.|+.|..+....+.++.+
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 45 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRM 45 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 35899999998889999999988999888765544544433
No 374
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=45.07 E-value=1.2e+02 Score=26.73 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=40.1
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHhhcCCEEEEEcC---------HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC
Q 048660 94 LHVLAVDDSYVDR-----KLIERLLQISSCKVTAVES---------GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP 159 (213)
Q Consensus 94 ~~ILvVdD~~~~~-----~~l~~~L~~~g~~v~~a~~---------g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp 159 (213)
.|+|||-|..... +.+...|+..|..+..+.+ ..++.+.+ +...+|+||- ..
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~-----------~~~~~D~IIa---iG 92 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLG-----------REFGAQAVIA---IG 92 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHH-----------HHcCCCEEEE---eC
Confidence 4899998865433 5678888888877666542 22344444 3346788772 35
Q ss_pred CCCHHHHHHHHH
Q 048660 160 GMTGYELLKKIK 171 (213)
Q Consensus 160 ~~~G~e~~~~ir 171 (213)
+.+-.++.+.+.
T Consensus 93 GGS~iD~aK~ia 104 (383)
T cd08186 93 GGSPIDSAKSAA 104 (383)
T ss_pred CccHHHHHHHHH
Confidence 666666666553
No 375
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=45.00 E-value=1.5e+02 Score=23.61 Aligned_cols=22 Identities=5% Similarity=0.073 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecC
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSE 187 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~ 187 (213)
|..+++.+.+.+ ...|.++++.
T Consensus 104 ~~~~~~~l~~~g---~~~i~~i~~~ 125 (268)
T cd06273 104 GRLAARHLIALG---HRRIAMIFGP 125 (268)
T ss_pred HHHHHHHHHHCC---CCeEEEEecc
Confidence 566777777642 3466767653
No 376
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=45.00 E-value=1.6e+02 Score=23.86 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=39.4
Q ss_pred cee-EEEEeCCC---CCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHc-CCCeeee
Q 048660 148 KVN-LIITDYTM---PGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEE-GAEEYIV 206 (213)
Q Consensus 148 ~~d-lil~D~~m---p~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~-G~~~~L~ 206 (213)
..| +++.++.- ..+-.+++++.+++. ..+|+++.-+..+.++..++++. |+++.+.
T Consensus 162 G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~---~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 162 GAGEILLTSMDRDGTKKGYDLELIRAVSSA---VNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred CCCEEEEeccCCCCCCCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 345 56655431 112246788888864 47999988888889999999987 8987653
No 377
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=44.78 E-value=1.1e+02 Score=23.35 Aligned_cols=89 Identities=15% Similarity=0.075 Sum_probs=49.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCEEE---------------EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEe
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCKVT---------------AVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~---------------~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D 155 (213)
.++.|+||..---.+.+.+.+.|+..++.+. ....+ .....+.. +. ....||+||||
T Consensus 31 ~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~a-t~~~~~~~-p~------~~~~yd~II~D 102 (148)
T PF07652_consen 31 KRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHA-TYGHFLLN-PC------RLKNYDVIIMD 102 (148)
T ss_dssp HTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHH-HHHHHHHT-SS------CTTS-SEEEEC
T ss_pred HccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccH-HHHHHhcC-cc------cccCccEEEEe
Confidence 4578999999999999999999986653222 11222 23333322 22 44579999999
Q ss_pred CCCCCCC--HHHHHHHHHhcCCCCCCcEEEEecCC
Q 048660 156 YTMPGMT--GYELLKKIKESSVFREVPVVIMSSED 188 (213)
Q Consensus 156 ~~mp~~~--G~e~~~~ir~~~~~~~~pII~lt~~~ 188 (213)
--. -.| .+.+.-.++.........+|.+|+..
T Consensus 103 EcH-~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 103 ECH-FTDPTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp TTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred ccc-cCCHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 533 234 33333344432223456789998853
No 378
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=44.75 E-value=1.2e+02 Score=23.86 Aligned_cols=31 Identities=10% Similarity=0.147 Sum_probs=27.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcCH
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESG 126 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g 126 (213)
|+|+|-.-.+...+.+.|++.|+.+....+.
T Consensus 2 i~~~d~~~~~~~~i~~~l~~~G~~v~~~~~~ 32 (205)
T PRK13141 2 IAIIDYGMGNLRSVEKALERLGAEAVITSDP 32 (205)
T ss_pred EEEEEcCCchHHHHHHHHHHCCCeEEEECCH
Confidence 7889988888899999999999999888764
No 379
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=44.71 E-value=1.1e+02 Score=26.13 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=36.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCE----EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCK----VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~----v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
....+|.-||-+....+..++-++-.|+. -....|.-+.+..++ ...+||+|++|-
T Consensus 144 gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~----------~~~~fD~IIlDP 203 (286)
T PF10672_consen 144 GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK----------KGGRFDLIILDP 203 (286)
T ss_dssp TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH----------HTT-EEEEEE--
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh----------cCCCCCEEEECC
Confidence 33457999999999999998888766642 335667777666654 234899999995
No 380
>PRK06849 hypothetical protein; Provisional
Probab=44.61 E-value=1.1e+02 Score=26.74 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=26.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGT 127 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~ 127 (213)
..+|||..........+.+.|.+.|++|..+.+..
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46788888887777777788888888887776544
No 381
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=44.32 E-value=1.1e+02 Score=25.99 Aligned_cols=67 Identities=24% Similarity=0.376 Sum_probs=45.0
Q ss_pred EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC--------CCCCCCHHHHHHHHHhcCCCCCCcEEEEecC-CCHHHH
Q 048660 123 VESGTRALQYLGLDGEQSNVGFDALKVNLIITDY--------TMPGMTGYELLKKIKESSVFREVPVVIMSSE-DVLTQI 193 (213)
Q Consensus 123 a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~--------~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~-~~~~~~ 193 (213)
.++.++|.+.+++ ..+|.+-..+ .-|.. +++.++.|++. -.+|+++.-+. .+.+..
T Consensus 152 ~t~~eea~~f~~~-----------tgvD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~---~~iPlv~hGgSGi~~e~i 216 (282)
T TIGR01859 152 LADPDEAEQFVKE-----------TGVDYLAAAIGTSHGKYKGEPGL-DFERLKEIKEL---TNIPLVLHGASGIPEEQI 216 (282)
T ss_pred cCCHHHHHHHHHH-----------HCcCEEeeccCccccccCCCCcc-CHHHHHHHHHH---hCCCEEEECCCCCCHHHH
Confidence 4577888887732 2456665431 11333 58999999885 36899888643 356678
Q ss_pred HHHHHcCCCee
Q 048660 194 DSCLEEGAEEY 204 (213)
Q Consensus 194 ~~~~~~G~~~~ 204 (213)
.++.++|++.+
T Consensus 217 ~~~i~~Gi~ki 227 (282)
T TIGR01859 217 KKAIKLGIAKI 227 (282)
T ss_pred HHHHHcCCCEE
Confidence 88999998764
No 382
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=44.32 E-value=1.2e+02 Score=23.12 Aligned_cols=56 Identities=23% Similarity=0.495 Sum_probs=32.3
Q ss_pred CCCceeEEEEeCCCCCCCHHHH-HHHHHhcCCCCCCcEE-EEecCCCHHHHHHHHHcCCCeeee
Q 048660 145 DALKVNLIITDYTMPGMTGYEL-LKKIKESSVFREVPVV-IMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 145 ~~~~~dlil~D~~mp~~~G~e~-~~~ir~~~~~~~~pII-~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
++.+||+|++=.-++. .+ +..+|+.+..+++|++ ++|.... .-..+..-|+|.|+.
T Consensus 86 ~~~~PD~IIsThp~~~----~~~l~~lk~~~~~~~~p~~tvvTD~~~--~H~~W~~~~~D~y~V 143 (169)
T PF06925_consen 86 REFQPDLIISTHPFPA----QVPLSRLKRRGRLPNIPVVTVVTDFDT--VHPFWIHPGVDRYFV 143 (169)
T ss_pred hhcCCCEEEECCcchh----hhHHHHHHHhhcccCCcEEEEEcCCCC--CCcCeecCCCCEEEE
Confidence 5678999999776654 23 4445554434467865 6676531 112345555655543
No 383
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=44.29 E-value=1.6e+02 Score=25.53 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=39.4
Q ss_pred cEEEEEeCCHHHH----HHHHHHHhhcCCEEEEEc------C---HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC
Q 048660 94 LHVLAVDDSYVDR----KLIERLLQISSCKVTAVE------S---GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG 160 (213)
Q Consensus 94 ~~ILvVdD~~~~~----~~l~~~L~~~g~~v~~a~------~---g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~ 160 (213)
.++|||.|..... ..+...|+..|..+..+. + -.++++.+ +...+|+|| ...+
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~-----------~~~~~d~Ii---aiGG 89 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAY-----------REEGCDGVI---AVGG 89 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHH-----------HhcCCCEEE---EeCC
Confidence 4889998765443 467777877777665543 2 22344443 334678877 3467
Q ss_pred CCHHHHHHHHH
Q 048660 161 MTGYELLKKIK 171 (213)
Q Consensus 161 ~~G~e~~~~ir 171 (213)
.+.+++++.+.
T Consensus 90 Gs~~D~AK~va 100 (370)
T cd08551 90 GSVLDTAKAIA 100 (370)
T ss_pred chHHHHHHHHH
Confidence 77777776664
No 384
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=44.24 E-value=1.6e+02 Score=23.41 Aligned_cols=85 Identities=14% Similarity=0.009 Sum_probs=47.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-HHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-YELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-~e~~~~ir 171 (213)
+.+|||....-.+...+.+.|.+.|+.|.......+..+.+...... ....+..+.+|+. +.+. .++++.+.
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~--~~~~~~~~~~~~~ 76 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK-----AGGKAIGVAMDVT--DEEAINAGIDYAV 76 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEcCCC--CHHHHHHHHHHHH
Confidence 35799999888888888888877899887654333333222111000 1123556666664 3333 34556665
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+. ...+-+++..+
T Consensus 77 ~~--~~~~d~vi~~a 89 (258)
T PRK12429 77 ET--FGGVDILVNNA 89 (258)
T ss_pred HH--cCCCCEEEECC
Confidence 54 23445555443
No 385
>PRK10060 RNase II stability modulator; Provisional
Probab=44.19 E-value=1e+02 Score=29.27 Aligned_cols=94 Identities=13% Similarity=0.151 Sum_probs=61.5
Q ss_pred HHHHHHHhhcCCEEEE--EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC----C-CCCHHHHHHHHHhcCCCCCC
Q 048660 107 KLIERLLQISSCKVTA--VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM----P-GMTGYELLKKIKESSVFREV 179 (213)
Q Consensus 107 ~~l~~~L~~~g~~v~~--a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m----p-~~~G~e~~~~ir~~~~~~~~ 179 (213)
..+-..|++.|+.+.. +..|...+..+ ...++|.|=+|-.. . +.....+++.|-.....-.+
T Consensus 544 ~~~l~~L~~~G~~ialDdfGtg~ssl~~L-----------~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~ 612 (663)
T PRK10060 544 LSVIQQFSQLGAQVHLDDFGTGYSSLSQL-----------ARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNL 612 (663)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHH-----------HhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCC
Confidence 3445667788997765 56778888888 45578999888522 2 23345556666443222345
Q ss_pred cEEEEecCCCHHHHHHHHHcCCC---e-eeeCCCCCC
Q 048660 180 PVVIMSSEDVLTQIDSCLEEGAE---E-YIVKPVKLS 212 (213)
Q Consensus 180 pII~lt~~~~~~~~~~~~~~G~~---~-~L~KP~~~~ 212 (213)
.+| ..+-.+.+....+.+.|++ + |+.||...+
T Consensus 613 ~vi-AeGVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~ 648 (663)
T PRK10060 613 QVI-AEGVETAKEDAFLTKNGVNERQGFLFAKPMPAV 648 (663)
T ss_pred cEE-EecCCCHHHHHHHHHcCCCEEecCccCCCCCHH
Confidence 544 6677778888889999985 3 477887643
No 386
>PRK05693 short chain dehydrogenase; Provisional
Probab=44.12 E-value=1.6e+02 Score=23.96 Aligned_cols=78 Identities=13% Similarity=0.074 Sum_probs=44.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcC
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESS 174 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~ 174 (213)
++||..-.-.+...+...|.+.|++|..+....+.++.+.. .....+-+|+.-+. +-.++++.+.+.
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~-----------~~~~~~~~Dl~~~~-~~~~~~~~~~~~- 69 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA-----------AGFTAVQLDVNDGA-ALARLAEELEAE- 69 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-----------CCCeEEEeeCCCHH-HHHHHHHHHHHh-
Confidence 57888888788888888888889988765443444444421 12345556664322 223345555443
Q ss_pred CCCCCcEEEEec
Q 048660 175 VFREVPVVIMSS 186 (213)
Q Consensus 175 ~~~~~pII~lt~ 186 (213)
...+-+++..+
T Consensus 70 -~~~id~vi~~a 80 (274)
T PRK05693 70 -HGGLDVLINNA 80 (274)
T ss_pred -cCCCCEEEECC
Confidence 23455555544
No 387
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=44.00 E-value=1.4e+02 Score=24.40 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=36.8
Q ss_pred eeEEEEeCCCCC-CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 149 VNLIITDYTMPG-MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 149 ~dlil~D~~mp~-~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
.|.|-.+...++ .-.++.+++++ .++|||..-+-.+.++..+++..|+|.+.
T Consensus 166 ~d~ihv~~~~~g~~ad~~~I~~i~-----~~ipVIgnGgI~s~eda~~~l~~GaD~Vm 218 (233)
T cd02911 166 ADIIHVDAMDPGNHADLKKIRDIS-----TELFIIGNNSVTTIESAKEMFSYGADMVS 218 (233)
T ss_pred CCEEEECcCCCCCCCcHHHHHHhc-----CCCEEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 455555544443 22355565554 36899999999999999999999998864
No 388
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=43.97 E-value=87 Score=25.73 Aligned_cols=88 Identities=20% Similarity=0.264 Sum_probs=58.8
Q ss_pred cEEEEEeC-CHHHHHHHHHHHhhcCCEEE---EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 94 LHVLAVDD-SYVDRKLIERLLQISSCKVT---AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 94 ~~ILvVdD-~~~~~~~l~~~L~~~g~~v~---~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
.+|=.|.+ ....+..|...|.+.|+++. +.++...|.++++. ...+|-+++-|-.+++.+|++.
T Consensus 40 ~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~---------~~lrP~l~v~d~a~~dF~gidT--- 107 (262)
T KOG3040|consen 40 VKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEE---------NQLRPYLIVDDDALEDFDGIDT--- 107 (262)
T ss_pred ceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHh---------cCCCceEEEcccchhhCCCccC---
Confidence 34544443 45567778888889999875 46777778888865 3346888888888888887532
Q ss_pred HHhcCCCCCCcEEEEecCCC-HHHHHHHHH
Q 048660 170 IKESSVFREVPVVIMSSEDV-LTQIDSCLE 198 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~-~~~~~~~~~ 198 (213)
. .+++.+|.+..... .+...+|++
T Consensus 108 ---s--~pn~VViglape~F~y~~ln~AFr 132 (262)
T KOG3040|consen 108 ---S--DPNCVVIGLAPEGFSYQRLNRAFR 132 (262)
T ss_pred ---C--CCCeEEEecCcccccHHHHHHHHH
Confidence 2 56777777777553 334444544
No 389
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=43.94 E-value=1.7e+02 Score=23.55 Aligned_cols=52 Identities=21% Similarity=0.424 Sum_probs=37.5
Q ss_pred EEEEeCCCCC---CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHH-HHHcCCCeee
Q 048660 151 LIITDYTMPG---MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDS-CLEEGAEEYI 205 (213)
Q Consensus 151 lil~D~~mp~---~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~-~~~~G~~~~L 205 (213)
+++.++.--+ .-.+++++.+++. .++|+++..+-.+.++..+ +...|+++.+
T Consensus 170 i~i~~i~~~g~~~g~~~~~~~~i~~~---~~ipvia~GGi~s~~di~~~l~~~gadgV~ 225 (232)
T TIGR03572 170 ILLNSIDRDGTMKGYDLELIKTVSDA---VSIPVIALGGAGSLDDLVEVALEAGASAVA 225 (232)
T ss_pred EEEeCCCccCCcCCCCHHHHHHHHhh---CCCCEEEECCCCCHHHHHHHHHHcCCCEEE
Confidence 6666642211 1237788888874 3789999888888888888 7788999874
No 390
>PRK06182 short chain dehydrogenase; Validated
Probab=43.90 E-value=1.7e+02 Score=23.68 Aligned_cols=78 Identities=17% Similarity=0.090 Sum_probs=46.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHHHh
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKIKE 172 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~ir~ 172 (213)
.+|||..-.--+...+...|.+.|++|.......+.++.+.. .....+.+|+.-+ +.+ .+++.+.+
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~-----------~~~~~~~~Dv~~~--~~~~~~~~~~~~ 70 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS-----------LGVHPLSLDVTDE--ASIKAAVDTIIA 70 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----------CCCeEEEeeCCCH--HHHHHHHHHHHH
Confidence 478888888888888888888889988866544455554421 1245666776432 222 24455544
Q ss_pred cCCCCCCcEEEEec
Q 048660 173 SSVFREVPVVIMSS 186 (213)
Q Consensus 173 ~~~~~~~pII~lt~ 186 (213)
. ...+-+++..+
T Consensus 71 ~--~~~id~li~~a 82 (273)
T PRK06182 71 E--EGRIDVLVNNA 82 (273)
T ss_pred h--cCCCCEEEECC
Confidence 3 23444555443
No 391
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=43.85 E-value=1.1e+02 Score=21.42 Aligned_cols=32 Identities=25% Similarity=0.208 Sum_probs=19.2
Q ss_pred eCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHH
Q 048660 100 DDSYVDRKLIERLLQISSCKVTAVESGTRALQ 131 (213)
Q Consensus 100 dD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~ 131 (213)
|.+......+.+.|.+.||.+.......+.++
T Consensus 9 ~~~k~~~~~~~~~l~~~G~~l~aT~gT~~~l~ 40 (110)
T cd01424 9 DRDKPEAVEIAKRLAELGFKLVATEGTAKYLQ 40 (110)
T ss_pred cCcHhHHHHHHHHHHHCCCEEEEchHHHHHHH
Confidence 34444455566667778998876554444443
No 392
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=43.85 E-value=52 Score=26.52 Aligned_cols=86 Identities=19% Similarity=0.174 Sum_probs=53.8
Q ss_pred hcccCCCcchhhhhhhhcCCccEEEEEeCCHHHHHHHHHHHhhcCCE-E-EEEcCHHHHHHHhhhcCCCCCCCCCCCcee
Q 048660 73 KETNRGFPFWAMATVAECSKELHVLAVDDSYVDRKLIERLLQISSCK-V-TAVESGTRALQYLGLDGEQSNVGFDALKVN 150 (213)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~g~~-v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~d 150 (213)
-+.+.|+...+..-..-..+.-+|.-||-++...+..++.|..+|+. | ....|+...+. ...+||
T Consensus 77 LeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~-------------~~apfD 143 (209)
T PF01135_consen 77 LEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWP-------------EEAPFD 143 (209)
T ss_dssp EEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTG-------------GG-SEE
T ss_pred EEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccc-------------cCCCcC
Confidence 44455544433333222234447999999999999999999998873 3 34556544332 334799
Q ss_pred EEEEeCCCCCCCHHHHHHHHHh
Q 048660 151 LIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 151 lil~D~~mp~~~G~e~~~~ir~ 172 (213)
.|++....+... ..++++|+.
T Consensus 144 ~I~v~~a~~~ip-~~l~~qL~~ 164 (209)
T PF01135_consen 144 RIIVTAAVPEIP-EALLEQLKP 164 (209)
T ss_dssp EEEESSBBSS---HHHHHTEEE
T ss_pred EEEEeeccchHH-HHHHHhcCC
Confidence 999999888755 456777664
No 393
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=43.60 E-value=17 Score=29.14 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=50.8
Q ss_pred HHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHH----HHHHHH---hcCC-CCCCc
Q 048660 109 IERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYE----LLKKIK---ESSV-FREVP 180 (213)
Q Consensus 109 l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e----~~~~ir---~~~~-~~~~p 180 (213)
+-..+++.|..+..+=+....++.+.... ...|.|++=..-|+..|-. .+++|+ +... ...--
T Consensus 97 ~i~~ik~~g~k~GialnP~T~~~~~~~~l---------~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~ 167 (201)
T PF00834_consen 97 TIKYIKEAGIKAGIALNPETPVEELEPYL---------DQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDF 167 (201)
T ss_dssp HHHHHHHTTSEEEEEE-TTS-GGGGTTTG---------CCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGS
T ss_pred HHHHHHHhCCCEEEEEECCCCchHHHHHh---------hhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCce
Confidence 34556667888887777666666653221 2467777666668765443 333333 2110 11223
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 181 VVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 181 II~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.|.+=+.-+.+....+.++|++.++.
T Consensus 168 ~I~vDGGI~~~~~~~~~~aGad~~V~ 193 (201)
T PF00834_consen 168 EIEVDGGINEENIKQLVEAGADIFVA 193 (201)
T ss_dssp EEEEESSESTTTHHHHHHHT--EEEE
T ss_pred EEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 56677777788899999999998764
No 394
>PRK08226 short chain dehydrogenase; Provisional
Probab=43.58 E-value=1.6e+02 Score=23.60 Aligned_cols=85 Identities=9% Similarity=0.073 Sum_probs=47.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
+.++||..-...+...+...|.+.|++|..+....++.+....... ....+..+-+|+.-+. +-..++..+.+
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~-~v~~~~~~~~~ 78 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCG------RGHRCTAVVADVRDPA-SVAAAIKRAKE 78 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHH------hCCceEEEECCCCCHH-HHHHHHHHHHH
Confidence 4578898888888888888888889988876544333222211000 1123455566664332 22335555554
Q ss_pred cCCCCCCcEEEEec
Q 048660 173 SSVFREVPVVIMSS 186 (213)
Q Consensus 173 ~~~~~~~pII~lt~ 186 (213)
. ...+-+++..+
T Consensus 79 ~--~~~id~vi~~a 90 (263)
T PRK08226 79 K--EGRIDILVNNA 90 (263)
T ss_pred H--cCCCCEEEECC
Confidence 4 23444555544
No 395
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=43.57 E-value=2e+02 Score=25.14 Aligned_cols=64 Identities=14% Similarity=0.137 Sum_probs=40.4
Q ss_pred cEEEEEeCCHHH----HHHHHHHHhhcCCEEEEEcC---------HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC
Q 048660 94 LHVLAVDDSYVD----RKLIERLLQISSCKVTAVES---------GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG 160 (213)
Q Consensus 94 ~~ILvVdD~~~~----~~~l~~~L~~~g~~v~~a~~---------g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~ 160 (213)
.|+|||-|.... .+.+...|++.|..+..+.. ..++.+.+ +...+|+|| ...+
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~D~II---aiGG 89 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLA-----------KEGGCDVII---ALGG 89 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHH-----------HhcCCCEEE---EeCC
Confidence 478888876443 34577778877876665532 33444444 345688887 3467
Q ss_pred CCHHHHHHHHH
Q 048660 161 MTGYELLKKIK 171 (213)
Q Consensus 161 ~~G~e~~~~ir 171 (213)
.+-+++++.+.
T Consensus 90 GS~~D~AKaia 100 (375)
T cd08194 90 GSPIDTAKAIA 100 (375)
T ss_pred chHHHHHHHHH
Confidence 77777777664
No 396
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=43.56 E-value=1.3e+02 Score=26.66 Aligned_cols=60 Identities=8% Similarity=0.134 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC----CHHHHHHHHHhcCCCCC
Q 048660 103 YVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM----TGYELLKKIKESSVFRE 178 (213)
Q Consensus 103 ~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~----~G~e~~~~ir~~~~~~~ 178 (213)
...-+.+...|...||..+. ....+|+|++..--... ..++.++.+|+. .++
T Consensus 10 ~~ds~~~~~~l~~~g~~~~~----------------------~~~~aD~v~intctv~~~a~~~~~~~i~~~k~~--~p~ 65 (414)
T TIGR01579 10 QYESESLKNQLIQKGYEVVP----------------------DEDKADVYIINTCTVTAKADSKARRAIRRARRQ--NPT 65 (414)
T ss_pred HHHHHHHHHHHHHCcCEECC----------------------CcccCCEEEEeccccchHHHHHHHHHHHHHHhh--CCC
Confidence 34456777788878887542 12246888887544332 367777777764 345
Q ss_pred CcEEEEecC
Q 048660 179 VPVVIMSSE 187 (213)
Q Consensus 179 ~pII~lt~~ 187 (213)
.+|| +++.
T Consensus 66 ~~vv-vgGc 73 (414)
T TIGR01579 66 AKII-VTGC 73 (414)
T ss_pred cEEE-EECC
Confidence 5544 4443
No 397
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=43.53 E-value=1.1e+02 Score=26.32 Aligned_cols=62 Identities=16% Similarity=0.302 Sum_probs=46.2
Q ss_pred cCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCC
Q 048660 116 SSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSED 188 (213)
Q Consensus 116 ~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~ 188 (213)
.|-.+.+..+...+++.+..... ...+|.+++++-. |...|..+++.|++. .+++.+++...
T Consensus 119 dg~~IlTh~~S~~v~~~l~~A~~------~~k~~~V~VtESR-P~~eG~~~ak~L~~~----gI~~~~I~Dsa 180 (301)
T COG1184 119 DGDVILTHSFSKTVLEVLKTAAD------RGKRFKVIVTESR-PRGEGRIMAKELRQS----GIPVTVIVDSA 180 (301)
T ss_pred CCCEEEEecCcHHHHHHHHHhhh------cCCceEEEEEcCC-CcchHHHHHHHHHHc----CCceEEEechH
Confidence 35677788888888888765433 3345899999965 888899999999985 36777776543
No 398
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=43.49 E-value=53 Score=29.31 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=32.0
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
++.++++++.....++|||...+-.+.++..+.+.+||+.+.
T Consensus 239 l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vq 280 (420)
T PRK08318 239 LNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQ 280 (420)
T ss_pred HHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChhe
Confidence 455556655311137999999999999999999999998763
No 399
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=43.36 E-value=1e+02 Score=24.61 Aligned_cols=67 Identities=22% Similarity=0.235 Sum_probs=46.8
Q ss_pred CCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC---CCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHH
Q 048660 117 SCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM---PGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQI 193 (213)
Q Consensus 117 g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m---p~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~ 193 (213)
++.|..-...+++.+.+. ...|+|=+|... | .+-.++++.||+. . .++|..-+..++.
T Consensus 45 ~~~V~ITPT~~ev~~l~~------------aGadIIAlDaT~R~Rp-~~l~~li~~i~~~--~----~l~MADist~ee~ 105 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAE------------AGADIIALDATDRPRP-ETLEELIREIKEK--Y----QLVMADISTLEEA 105 (192)
T ss_dssp TSS--BS-SHHHHHHHHH------------CT-SEEEEE-SSSS-S-S-HHHHHHHHHHC--T----SEEEEE-SSHHHH
T ss_pred CCCeEECCCHHHHHHHHH------------cCCCEEEEecCCCCCC-cCHHHHHHHHHHh--C----cEEeeecCCHHHH
Confidence 457777788888888774 246899999866 5 6777889999875 2 6778888889999
Q ss_pred HHHHHcCCC
Q 048660 194 DSCLEEGAE 202 (213)
Q Consensus 194 ~~~~~~G~~ 202 (213)
..+.++|+|
T Consensus 106 ~~A~~~G~D 114 (192)
T PF04131_consen 106 INAAELGFD 114 (192)
T ss_dssp HHHHHTT-S
T ss_pred HHHHHcCCC
Confidence 999999985
No 400
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.15 E-value=1.6e+02 Score=24.93 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=44.5
Q ss_pred EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHH
Q 048660 119 KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLE 198 (213)
Q Consensus 119 ~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~ 198 (213)
.-+.+.+.+++.+.+. ..+|.|.+|-. +.+.++++.+.. .+++|+. .++.-+.+....+..
T Consensus 192 I~VEv~tleea~eA~~------------~gaD~I~LD~~-----~~e~l~~~v~~~-~~~i~le-AsGGIt~~ni~~~a~ 252 (277)
T PRK05742 192 VEVEVESLDELRQALA------------AGADIVMLDEL-----SLDDMREAVRLT-AGRAKLE-ASGGINESTLRVIAE 252 (277)
T ss_pred EEEEeCCHHHHHHHHH------------cCCCEEEECCC-----CHHHHHHHHHHh-CCCCcEE-EECCCCHHHHHHHHH
Confidence 3456789999888873 24799988832 344444444321 2466655 555666888889999
Q ss_pred cCCCee
Q 048660 199 EGAEEY 204 (213)
Q Consensus 199 ~G~~~~ 204 (213)
.|+|.+
T Consensus 253 tGvD~I 258 (277)
T PRK05742 253 TGVDYI 258 (277)
T ss_pred cCCCEE
Confidence 999875
No 401
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=43.14 E-value=1.6e+02 Score=23.03 Aligned_cols=70 Identities=9% Similarity=0.056 Sum_probs=47.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhc--CCEEEEEc------CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQIS--SCKVTAVE------SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT 162 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~--g~~v~~a~------~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~ 162 (213)
..+.+|.++...+...+.+.+.|++. |..+.... +.++.++.+ ....+|+|++-+.+|.-.
T Consensus 46 ~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I-----------~~s~~dil~VglG~PkQE 114 (177)
T TIGR00696 46 KEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKI-----------ARSGAGIVFVGLGCPKQE 114 (177)
T ss_pred HcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHH-----------HHcCCCEEEEEcCCcHhH
Confidence 34579999999999988888888754 44544331 122334555 445799999999999865
Q ss_pred HHHHHHHHHhc
Q 048660 163 GYELLKKIKES 173 (213)
Q Consensus 163 G~e~~~~ir~~ 173 (213)
- ++.+.+..
T Consensus 115 ~--~~~~~~~~ 123 (177)
T TIGR00696 115 I--WMRNHRHL 123 (177)
T ss_pred H--HHHHhHHh
Confidence 3 34555543
No 402
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=42.94 E-value=2.1e+02 Score=24.33 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=43.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCE-EE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH--HHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCK-VT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG--YELLK 168 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~-v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G--~e~~~ 168 (213)
..+|.-+|-++...+..+...+..|.. +. ...+..+..... ...||+|++| |...| -++++
T Consensus 195 ~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~------------~~~~D~Vv~d---PPr~G~~~~~~~ 259 (315)
T PRK03522 195 GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ------------GEVPDLVLVN---PPRRGIGKELCD 259 (315)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc------------CCCCeEEEEC---CCCCCccHHHHH
Confidence 458999999999888888888777752 32 344544433211 1258999999 33444 36677
Q ss_pred HHHhc
Q 048660 169 KIKES 173 (213)
Q Consensus 169 ~ir~~ 173 (213)
.|.+.
T Consensus 260 ~l~~~ 264 (315)
T PRK03522 260 YLSQM 264 (315)
T ss_pred HHHHc
Confidence 77664
No 403
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=42.75 E-value=1.4e+02 Score=25.19 Aligned_cols=68 Identities=16% Similarity=0.348 Sum_probs=45.4
Q ss_pred EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC--CC---CC--CCHHHHHHHHHhcCCCCCCcEEEEecCC-CHHHHH
Q 048660 123 VESGTRALQYLGLDGEQSNVGFDALKVNLIITDY--TM---PG--MTGYELLKKIKESSVFREVPVVIMSSED-VLTQID 194 (213)
Q Consensus 123 a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~--~m---p~--~~G~e~~~~ir~~~~~~~~pII~lt~~~-~~~~~~ 194 (213)
+++.++|.+..+. ...|.+-+.+ .. ++ .=|++.+++|++. -++|+++.-+.. ..+...
T Consensus 152 ~t~~eea~~f~~~-----------tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~---~~iPlV~hG~SGI~~e~~~ 217 (281)
T PRK06806 152 LTSTTEAKRFAEE-----------TDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDV---VHIPLVLHGGSGISPEDFK 217 (281)
T ss_pred eCCHHHHHHHHHh-----------hCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHh---cCCCEEEECCCCCCHHHHH
Confidence 5678888877632 2345555522 11 11 2488999999975 368998887443 567788
Q ss_pred HHHHcCCCee
Q 048660 195 SCLEEGAEEY 204 (213)
Q Consensus 195 ~~~~~G~~~~ 204 (213)
++.+.|++.+
T Consensus 218 ~~i~~G~~ki 227 (281)
T PRK06806 218 KCIQHGIRKI 227 (281)
T ss_pred HHHHcCCcEE
Confidence 8999998764
No 404
>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]
Probab=42.59 E-value=29 Score=28.24 Aligned_cols=72 Identities=11% Similarity=0.187 Sum_probs=51.8
Q ss_pred HHHHHHHHhhcCCEEEEEcCHHHHH---HHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEE
Q 048660 106 RKLIERLLQISSCKVTAVESGTRAL---QYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVV 182 (213)
Q Consensus 106 ~~~l~~~L~~~g~~v~~a~~g~eal---~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII 182 (213)
++.+...|...|..+.++.+|.+.+ +++.. -..+|.++++|..--.-..+.+...+.+. +.+++|-
T Consensus 35 ~eIm~~al~tf~~~~q~a~~G~~~lvlid~~~~---------~~~~~~l~~idT~~~~PeT~~l~d~Vekk--Y~~i~I~ 103 (261)
T KOG0189|consen 35 QEIMDWALETFPNLFQTAASGLEGLVLIDMLSK---------TGRPFRLFFIDTLHHFPETLRLFDAVEKK--YGNIRIH 103 (261)
T ss_pred HHHHHHHHHHhhhHHHHHhccccchHHHHHHHH---------cCCCceeEEeeccccChHHHHHHHHHHHh--cCceEEE
Confidence 5677778888887777776666654 44433 33478999999877666788888888876 5678887
Q ss_pred EEecCC
Q 048660 183 IMSSED 188 (213)
Q Consensus 183 ~lt~~~ 188 (213)
++-...
T Consensus 104 ~~~pd~ 109 (261)
T KOG0189|consen 104 VYFPDA 109 (261)
T ss_pred EEcchh
Confidence 776544
No 405
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=42.53 E-value=1.2e+02 Score=21.41 Aligned_cols=83 Identities=22% Similarity=0.161 Sum_probs=49.6
Q ss_pred EEEEEe--CCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHH-hhhcCCCCCCCCCCCcee-EEEEeCCCCCC--CHHHHHH
Q 048660 95 HVLAVD--DSYVDRKLIERLLQISSCKVTAVESGTRALQY-LGLDGEQSNVGFDALKVN-LIITDYTMPGM--TGYELLK 168 (213)
Q Consensus 95 ~ILvVd--D~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~-l~~~~~~~~~~~~~~~~d-lil~D~~mp~~--~G~e~~~ 168 (213)
||.++. ........+...|.+.|..+....+..+.... +... . +=| +|++. .++. +-.+.++
T Consensus 7 ~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~d~vi~is--~sg~~~~~~~~~~ 74 (131)
T PF01380_consen 7 RIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENL--------D--PDDLVIIIS--YSGETRELIELLR 74 (131)
T ss_dssp EEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGC--------S--TTEEEEEEE--SSSTTHHHHHHHH
T ss_pred EEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccc--------c--ccceeEeee--ccccchhhhhhhH
Confidence 566664 45556677777787788877777777664443 2111 1 113 34444 3343 3555666
Q ss_pred HHHhcCCCCCCcEEEEecCCCHHHH
Q 048660 169 KIKESSVFREVPVVIMSSEDVLTQI 193 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~~~~~~ 193 (213)
.+++. ..++|++|+.......
T Consensus 75 ~ak~~----g~~vi~iT~~~~~~l~ 95 (131)
T PF01380_consen 75 FAKER----GAPVILITSNSESPLA 95 (131)
T ss_dssp HHHHT----TSEEEEEESSTTSHHH
T ss_pred HHHhc----CCeEEEEeCCCCCchh
Confidence 66653 6899999988765433
No 406
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=42.44 E-value=1.3e+02 Score=24.78 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=50.1
Q ss_pred HHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH----HH---HhcCCCCC-Cc
Q 048660 109 IERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK----KI---KESSVFRE-VP 180 (213)
Q Consensus 109 l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~----~i---r~~~~~~~-~p 180 (213)
+-..+++.|.++..|=+...-++.+.... ...|.|++=..-|+..|-.+.. +| |+...... -.
T Consensus 100 ~i~~Ik~~G~kaGlalnP~T~~~~l~~~l---------~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~ 170 (229)
T PRK09722 100 LIDEIRRAGMKVGLVLNPETPVESIKYYI---------HLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEY 170 (229)
T ss_pred HHHHHHHcCCCEEEEeCCCCCHHHHHHHH---------HhcCEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCe
Confidence 33555666776666544333222221100 1356666555568877655433 33 32111112 23
Q ss_pred EEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 181 VVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 181 II~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.|-+-+.-+.+....+.++|+|.++.
T Consensus 171 ~IeVDGGI~~~~i~~~~~aGad~~V~ 196 (229)
T PRK09722 171 LIEVDGSCNQKTYEKLMEAGADVFIV 196 (229)
T ss_pred EEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 46677778888999999999997764
No 407
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=42.37 E-value=2e+02 Score=24.62 Aligned_cols=81 Identities=12% Similarity=0.166 Sum_probs=52.2
Q ss_pred cCCccEEEEEeCCHHHH-HHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC--CCCCC-----
Q 048660 90 CSKELHVLAVDDSYVDR-KLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY--TMPGM----- 161 (213)
Q Consensus 90 ~~~~~~ILvVdD~~~~~-~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~--~mp~~----- 161 (213)
..+..+|.+.|--|... ..+...|.+.|..+....|..-+.-+- ..|.||+.. -+.+.
T Consensus 143 ~~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~~m~--------------~vd~VivGAd~v~~nG~v~nk 208 (310)
T PRK08535 143 QGKDIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFMK--------------DVDKVVVGADAITANGAVINK 208 (310)
T ss_pred CCCeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehhHHHHHHH--------------hCCEEEECccEEecCCCEEeH
Confidence 45678899888887653 556777888999998887765544331 367777644 33433
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEecC
Q 048660 162 TGYELLKKIKESSVFREVPVVIMSSE 187 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~lt~~ 187 (213)
-|--.+..+-+. .++|+++++..
T Consensus 209 iGT~~~A~~Ak~---~~vPv~V~a~~ 231 (310)
T PRK08535 209 IGTSQIALAAHE---ARVPFMVAAET 231 (310)
T ss_pred HhHHHHHHHHHH---hCCCEEEeccc
Confidence 354445444432 47899988763
No 408
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=42.27 E-value=1.1e+02 Score=25.19 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=36.7
Q ss_pred EEEEEeCCHHHH----------HHHHHHHhhcCCEEEEEc--CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC
Q 048660 95 HVLAVDDSYVDR----------KLIERLLQISSCKVTAVE--SGTRALQYLGLDGEQSNVGFDALKVNLIITDYT 157 (213)
Q Consensus 95 ~ILvVdD~~~~~----------~~l~~~L~~~g~~v~~a~--~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~ 157 (213)
-|.+||.|.... .-|...++..|++|..+. |-++-.+.+..... ...+|.+||.|..
T Consensus 173 LiaivD~N~~QldG~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~a~~~~~~------~~~rP~~IIa~Tv 241 (243)
T COG3959 173 LIAIVDRNKLQLDGETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVEALEKAKG------SKGRPTVIIAKTV 241 (243)
T ss_pred EEEEEecCCcccCCchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHHHHHhhhc------cCCCCeEEEEecc
Confidence 477888775433 347777888899999886 34554444433211 1237899998864
No 409
>PLN02645 phosphoglycolate phosphatase
Probab=42.25 E-value=83 Score=26.79 Aligned_cols=50 Identities=14% Similarity=0.022 Sum_probs=32.3
Q ss_pred ceeEEEEeCC-------CCCCCHHHHHHHHHhcCCCCCCcEEEEecCCC---HHHHHHHHHcCC
Q 048660 148 KVNLIITDYT-------MPGMTGYELLKKIKESSVFREVPVVIMSSEDV---LTQIDSCLEEGA 201 (213)
Q Consensus 148 ~~dlil~D~~-------mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~---~~~~~~~~~~G~ 201 (213)
.++++++|+. -+--...++++.+|+. ..+++++|++.. .....++...|+
T Consensus 27 ~~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~----g~~~~~~TN~~~~~~~~~~~~l~~lGi 86 (311)
T PLN02645 27 SVETFIFDCDGVIWKGDKLIEGVPETLDMLRSM----GKKLVFVTNNSTKSRAQYGKKFESLGL 86 (311)
T ss_pred hCCEEEEeCcCCeEeCCccCcCHHHHHHHHHHC----CCEEEEEeCCCCCCHHHHHHHHHHCCC
Confidence 4677777752 2223457888888864 678999998763 333455566776
No 410
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.16 E-value=91 Score=26.68 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=30.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEc
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCKVTAVE 124 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~ 124 (213)
-.+.+|.|+........-+..+|.+.|+.|+.+.
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~ 189 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAH 189 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEEC
Confidence 4678999999999999999999999999999885
No 411
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=41.94 E-value=97 Score=25.10 Aligned_cols=51 Identities=16% Similarity=0.079 Sum_probs=30.9
Q ss_pred ceeEEEEeCC-------CCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHH--HHHHHcCCC
Q 048660 148 KVNLIITDYT-------MPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQI--DSCLEEGAE 202 (213)
Q Consensus 148 ~~dlil~D~~-------mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~--~~~~~~G~~ 202 (213)
.++++++|+. -+--...++++.+++. ..++.++|........ ....+.|..
T Consensus 7 ~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~----G~~~~ivTN~~~~~~~~~~~L~~~gl~ 66 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQ----GKPVYFVSNSPRNIFSLHKTLKSLGIN 66 (242)
T ss_pred cCCEEEEecccccccCCccCccHHHHHHHHHHC----CCEEEEEeCCCCChHHHHHHHHHCCCC
Confidence 4678888872 1223456688888864 5678888876543322 344556654
No 412
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=41.94 E-value=1e+02 Score=23.48 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=38.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
.+.+|.++.+.. ....+...... +..+..+.+..++++++ ...+.|.++.|.
T Consensus 109 ~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l-----------~~g~~d~~i~~~ 160 (225)
T PF00497_consen 109 KGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEAL-----------LSGRIDAFIVDE 160 (225)
T ss_dssp TTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHH-----------HTTSSSEEEEEH
T ss_pred cCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHH-----------hcCCeeeeeccc
Confidence 345888888865 34445554433 67888899999999999 556889999874
No 413
>PRK07024 short chain dehydrogenase; Provisional
Probab=41.92 E-value=1.8e+02 Score=23.32 Aligned_cols=83 Identities=18% Similarity=0.076 Sum_probs=46.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+|||..-...+...+...|.+.|++|.....-.+.++.+..... .......+-+|+.-++ +-.++++.+.+.
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~------~~~~~~~~~~Dl~~~~-~i~~~~~~~~~~ 75 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLP------KAARVSVYAADVRDAD-ALAAAAADFIAA 75 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc------cCCeeEEEEcCCCCHH-HHHHHHHHHHHh
Confidence 478898888888888888888889988766543444443322110 1113445555554322 233455555543
Q ss_pred CCCCCCcEEEEe
Q 048660 174 SVFREVPVVIMS 185 (213)
Q Consensus 174 ~~~~~~pII~lt 185 (213)
...+-+++..
T Consensus 76 --~g~id~lv~~ 85 (257)
T PRK07024 76 --HGLPDVVIAN 85 (257)
T ss_pred --CCCCCEEEEC
Confidence 2233455543
No 414
>PRK08185 hypothetical protein; Provisional
Probab=41.89 E-value=1.3e+02 Score=25.52 Aligned_cols=65 Identities=18% Similarity=0.342 Sum_probs=45.1
Q ss_pred EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC---------C-CCCCCHHHHHHHHHhcCCCCCCcEEEEecCC-CHH
Q 048660 123 VESGTRALQYLGLDGEQSNVGFDALKVNLIITDY---------T-MPGMTGYELLKKIKESSVFREVPVVIMSSED-VLT 191 (213)
Q Consensus 123 a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~---------~-mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~-~~~ 191 (213)
.++.++|.+.++ ....|.+-.-+ . -|+.+ ++.++.|++. -++|+++..+.. ..+
T Consensus 148 ~t~peea~~f~~-----------~TgvD~LAvaiGt~HG~y~~~~kp~L~-~e~l~~I~~~---~~iPLVlHGgsg~~~e 212 (283)
T PRK08185 148 YTDPEQAEDFVS-----------RTGVDTLAVAIGTAHGIYPKDKKPELQ-MDLLKEINER---VDIPLVLHGGSANPDA 212 (283)
T ss_pred CCCHHHHHHHHH-----------hhCCCEEEeccCcccCCcCCCCCCCcC-HHHHHHHHHh---hCCCEEEECCCCCCHH
Confidence 446777777773 33456666622 1 25556 8999999875 378999887763 566
Q ss_pred HHHHHHHcCCC
Q 048660 192 QIDSCLEEGAE 202 (213)
Q Consensus 192 ~~~~~~~~G~~ 202 (213)
+.+++.+.|+.
T Consensus 213 ~~~~ai~~GI~ 223 (283)
T PRK08185 213 EIAESVQLGVG 223 (283)
T ss_pred HHHHHHHCCCe
Confidence 78889999974
No 415
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=41.77 E-value=42 Score=25.87 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEE
Q 048660 107 KLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLII 153 (213)
Q Consensus 107 ~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil 153 (213)
..+..+.++.||.|.+++.|.-|...+ .+.+|+.|+
T Consensus 76 g~l~~lae~~g~~v~i~~Ggt~ar~~i-----------k~~~p~~ii 111 (158)
T PF01976_consen 76 GDLKKLAEKYGYKVYIATGGTLARKII-----------KEYRPKAII 111 (158)
T ss_pred hHHHHHHHHcCCEEEEEcChHHHHHHH-----------HHhCCCEEE
Confidence 346666778999999999999999998 445677555
No 416
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=41.70 E-value=70 Score=26.87 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
++.++.+++. -++|||...+-.+.++..+++.+|++.+
T Consensus 220 ~~~i~~i~~~---~~ipii~~GGI~~~~da~~~l~~GAd~V 257 (296)
T cd04740 220 LRMVYQVYKA---VEIPIIGVGGIASGEDALEFLMAGASAV 257 (296)
T ss_pred HHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 5778888874 3699999999999999999999999765
No 417
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=41.70 E-value=82 Score=25.09 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=31.3
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 162 TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
..++.++.+|+. .++||++...-.+......+.++|++..+
T Consensus 59 g~~~~~~~i~~~---v~iPi~~~~~i~~~~~v~~~~~~Gad~v~ 99 (217)
T cd00331 59 GSLEDLRAVREA---VSLPVLRKDFIIDPYQIYEARAAGADAVL 99 (217)
T ss_pred CCHHHHHHHHHh---cCCCEEECCeecCHHHHHHHHHcCCCEEE
Confidence 456778888874 37898876655666678889999999886
No 418
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=41.66 E-value=1.1e+02 Score=22.34 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhcCCEEEEE---cCHHHHHH-HhhhcCCCCCCCCCCCceeEEEEeCC
Q 048660 104 VDRKLIERLLQISSCKVTAV---ESGTRALQ-YLGLDGEQSNVGFDALKVNLIITDYT 157 (213)
Q Consensus 104 ~~~~~l~~~L~~~g~~v~~a---~~g~eal~-~l~~~~~~~~~~~~~~~~dlil~D~~ 157 (213)
.+...+..+|+++|+++... .|..+++. .++... + .+|+||+-=.
T Consensus 19 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~-------~--~~DlvittGG 67 (133)
T cd00758 19 TNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEAS-------R--EADLVLTTGG 67 (133)
T ss_pred chHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHH-------h--cCCEEEECCC
Confidence 45778888898898866543 44444333 332211 1 3788887543
No 419
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=41.66 E-value=2.5e+02 Score=24.81 Aligned_cols=56 Identities=23% Similarity=0.239 Sum_probs=37.7
Q ss_pred CCceeEEEEeCCC-------CCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 146 ALKVNLIITDYTM-------PGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 146 ~~~~dlil~D~~m-------p~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+...|+|.++... +..+-..+.+.+++. ++|||+ ..-.+.+...+++++|+|.+..
T Consensus 152 eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~----~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 152 EAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL----DVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred HCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC----CCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 3467899996532 222455566666642 688876 4556678889999999998753
No 420
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=41.53 E-value=1.8e+02 Score=23.18 Aligned_cols=38 Identities=24% Similarity=0.085 Sum_probs=26.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHH
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQY 132 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~ 132 (213)
+|||..-.-.+...+...|.+.|++|..+....+.++.
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~ 39 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQE 39 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 57888887777888888888889988766443333433
No 421
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=41.46 E-value=1.2e+02 Score=24.34 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=30.2
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCEEEEE
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCKVTAV 123 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a 123 (213)
-.+.+|+||..+..+..-|..+|.+.|..|+.+
T Consensus 60 l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~ 92 (197)
T cd01079 60 LYGKTITIINRSEVVGRPLAALLANDGARVYSV 92 (197)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCCEEEEE
Confidence 346799999999999999999999999999988
No 422
>PRK01362 putative translaldolase; Provisional
Probab=41.40 E-value=1.9e+02 Score=23.42 Aligned_cols=87 Identities=20% Similarity=0.158 Sum_probs=49.8
Q ss_pred HHHHhhcCC--EEEEEcCHHHHHHHhhhcCCCCCCCCCCCce-eEEEEeCCCCCCCHHHHHHHHHhcCC--CCCCcEEEE
Q 048660 110 ERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFDALKV-NLIITDYTMPGMTGYELLKKIKESSV--FREVPVVIM 184 (213)
Q Consensus 110 ~~~L~~~g~--~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~-dlil~D~~mp~~~G~e~~~~ir~~~~--~~~~pII~l 184 (213)
.+.|++.|. .++.+-+..+|+...... ..| ..-+--+.-.+.||+++++.+++... ..++. |+.
T Consensus 94 ~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aG----------a~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tk-ila 162 (214)
T PRK01362 94 VKALSKEGIKTNVTLIFSANQALLAAKAG----------ATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTE-IIA 162 (214)
T ss_pred HHHHHHCCCceEEeeecCHHHHHHHHhcC----------CcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcE-EEE
Confidence 334666675 345567777777665321 111 11111112235789999888886321 12344 445
Q ss_pred ecCCCHHHHHHHHHcCCCeeeeCC
Q 048660 185 SSEDVLTQIDSCLEEGAEEYIVKP 208 (213)
Q Consensus 185 t~~~~~~~~~~~~~~G~~~~L~KP 208 (213)
++..+..+..++..+|++ +++-|
T Consensus 163 AS~r~~~~v~~~~~~G~d-~iTi~ 185 (214)
T PRK01362 163 ASVRHPMHVLEAALAGAD-IATIP 185 (214)
T ss_pred eecCCHHHHHHHHHcCCC-EEecC
Confidence 556678888889999998 44433
No 423
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=41.36 E-value=66 Score=27.73 Aligned_cols=74 Identities=14% Similarity=0.059 Sum_probs=53.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
.+.+||+|..---.+..-|..-|...|+.|..+.+-.......- ..+.....++|+..|+..|-.-+.+.+=.|
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~------~~~~~~~~fel~~hdv~~pl~~evD~IyhL 98 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENL------EHWIGHPNFELIRHDVVEPLLKEVDQIYHL 98 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhc------chhccCcceeEEEeechhHHHHHhhhhhhh
Confidence 34689999999999999999999999999998877544433211 122355679999999999855554443333
No 424
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=41.36 E-value=8.4 Score=31.49 Aligned_cols=64 Identities=23% Similarity=0.439 Sum_probs=46.5
Q ss_pred CceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCC
Q 048660 147 LKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVK 210 (213)
Q Consensus 147 ~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~ 210 (213)
..+|+++.+..||++.++.....+.........+++++............+..|+.+|+.+|..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 125 (340)
T KOG1601|consen 62 FSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPVPSMPSSNSSSSSSSSVSPSASLELTKPDR 125 (340)
T ss_pred ccccccccccccccccccccccccccCCCCCCCCcccccccccchhhhcccCCccccccccccc
Confidence 4679999999999999999888887533345555555555554444566666678889998875
No 425
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=40.89 E-value=97 Score=25.77 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=31.4
Q ss_pred eeEEEEeCC-------CCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCH---HHHHHHHHcCCC
Q 048660 149 VNLIITDYT-------MPGMTGYELLKKIKESSVFREVPVVIMSSEDVL---TQIDSCLEEGAE 202 (213)
Q Consensus 149 ~dlil~D~~-------mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~---~~~~~~~~~G~~ 202 (213)
++++++|+. -+--...++++.+++. ..+++++|++... ....+....|.+
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~ga~e~l~~L~~~----g~~~~~~Tnns~~~~~~~~~~l~~~G~~ 61 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPGAPELLDRLARA----GKAALFVTNNSTKSRAEYALKFARLGFN 61 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcCHHHHHHHHHHC----CCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 456777763 1111267888888864 6789999986533 334456667764
No 426
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.79 E-value=1.5e+02 Score=24.05 Aligned_cols=79 Identities=11% Similarity=0.129 Sum_probs=36.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC-C-----CC
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP-G-----MT 162 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp-~-----~~ 162 (213)
.+..++++.-+. ....+..++ ..+.+-..+ ....+.++.+.. ...-+|++|...+ . .|
T Consensus 33 ~g~~~~~~~~~~-~~~~~~~~~-~~~~dgiii~~~~~~~~~~~~~~~-----------~~ipvV~~~~~~~~~~~~v~~d 99 (283)
T cd06279 33 AGVNLLLLPASS-EDSDSALVV-SALVDGFIVYGVPRDDPLVAALLR-----------RGLPVVVVDQPLPPGVPSVGID 99 (283)
T ss_pred CCCEEEEecCcc-HHHHHHHHH-hcCCCEEEEeCCCCChHHHHHHHH-----------cCCCEEEEecCCCCCCCEEeeC
Confidence 456777765443 233443333 344332221 122345555532 2234777775432 1 12
Q ss_pred ----HHHHHHHHHhcCCCCCCcEEEEec
Q 048660 163 ----GYELLKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 163 ----G~e~~~~ir~~~~~~~~pII~lt~ 186 (213)
|..+++.+.+.+ +-.|.+++.
T Consensus 100 ~~~~g~~~~~~L~~~g---~~~i~~i~~ 124 (283)
T cd06279 100 DRAAAREAARHLLDLG---HRRIGILGL 124 (283)
T ss_pred cHHHHHHHHHHHHHcC---CCcEEEecC
Confidence 666677776643 234555544
No 427
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=40.73 E-value=1.2e+02 Score=21.02 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=32.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
|+|+.-+..-+..++.+.+ .++.+..++.-.+..+.++. ..+.++.-|.
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~~~~~~~~-----------~~~~~i~gd~ 49 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPERVEELRE-----------EGVEVIYGDA 49 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHHHHHHHHH-----------TTSEEEES-T
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcHHHHHHHh-----------cccccccccc
Confidence 5778888776666666666 66788888777777777642 2356666654
No 428
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.69 E-value=1.9e+02 Score=23.08 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=41.3
Q ss_pred CccEEEEEeCC--HH-HHHHHHHHHhhcCCEEE--E-EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-----
Q 048660 92 KELHVLAVDDS--YV-DRKLIERLLQISSCKVT--A-VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG----- 160 (213)
Q Consensus 92 ~~~~ILvVdD~--~~-~~~~l~~~L~~~g~~v~--~-a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~----- 160 (213)
.+.++++...+ .. ..+.+..++. .+++.. . .......++.+ .....-+|++|-....
T Consensus 28 ~g~~~~~~~~~~~~~~~~~~i~~l~~-~~~dgiii~~~~~~~~~~~~~-----------~~~~ipvV~i~~~~~~~~~~~ 95 (270)
T cd06296 28 AGYDVVLSESGRRTSPERQWVERLSA-RRTDGVILVTPELTSAQRAAL-----------RRTGIPFVVVDPAGDPDADVP 95 (270)
T ss_pred cCCeEEEecCCCchHHHHHHHHHHHH-cCCCEEEEecCCCChHHHHHH-----------hcCCCCEEEEecccCCCCCCC
Confidence 35677666433 32 2334444444 444322 2 22233445555 2334567777754321
Q ss_pred ---CC----HHHHHHHHHhcCCCCCCcEEEEecCC
Q 048660 161 ---MT----GYELLKKIKESSVFREVPVVIMSSED 188 (213)
Q Consensus 161 ---~~----G~e~~~~ir~~~~~~~~pII~lt~~~ 188 (213)
.| |..+++.+.+. ..-.|.++++..
T Consensus 96 ~v~~d~~~~~~~a~~~l~~~---g~~~i~~i~~~~ 127 (270)
T cd06296 96 SVGATNWAGGLAATEHLLEL---GHRRIGFITGPP 127 (270)
T ss_pred EEEeCcHHHHHHHHHHHHHc---CCCcEEEEcCCC
Confidence 12 56667777664 356777777653
No 429
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=40.63 E-value=2.2e+02 Score=23.81 Aligned_cols=80 Identities=20% Similarity=0.160 Sum_probs=45.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCC---EEEE--Ec---CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHH
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSC---KVTA--VE---SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYEL 166 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~---~v~~--a~---~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~ 166 (213)
+|.++-++......+...+++.|. .+.. .. +....+..+ ....+|+|++.+. ..+...+
T Consensus 131 ~vavl~~~~~~~~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i-----------~~~~~d~vv~~~~--~~~~~~~ 197 (327)
T cd06382 131 SFTIIYESAEGLLRLQELLQAFGISGITITVRQLDDDLDYRPLLKEI-----------KNSGDNRIIIDCS--ADILIEL 197 (327)
T ss_pred EEEEEecChHHHHHHHHHHHhhccCCCeEEEEEccCCccHHHHHHHH-----------HhcCceEEEEECC--HHHHHHH
Confidence 455554444466677788876653 2322 22 345555555 3446899998664 3457778
Q ss_pred HHHHHhcCCCCCCcEEEEecC
Q 048660 167 LKKIKESSVFREVPVVIMSSE 187 (213)
Q Consensus 167 ~~~ir~~~~~~~~pII~lt~~ 187 (213)
++++++.+......+.+++..
T Consensus 198 ~~qa~~~g~~~~~~~~i~~~~ 218 (327)
T cd06382 198 LKQAQQVGMMSEYYHYIITNL 218 (327)
T ss_pred HHHHHHhCccccceEEEEecC
Confidence 888887643333333344444
No 430
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=40.56 E-value=2.8e+02 Score=25.00 Aligned_cols=70 Identities=21% Similarity=0.238 Sum_probs=48.3
Q ss_pred ccEEEEEeCCHHHHHHHH--HHHhhcC------CEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC--
Q 048660 93 ELHVLAVDDSYVDRKLIE--RLLQISS------CKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT-- 162 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~--~~L~~~g------~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~-- 162 (213)
-.+|-.||=||...+..+ ..|+..+ -+|.++.+ +|.++++.. ...||.+|+|+.-|..+
T Consensus 313 ~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~d--DAf~wlr~a---------~~~fD~vIVDl~DP~tps~ 381 (508)
T COG4262 313 VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVND--DAFQWLRTA---------ADMFDVVIVDLPDPSTPSI 381 (508)
T ss_pred cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEec--cHHHHHHhh---------cccccEEEEeCCCCCCcch
Confidence 457999999999988888 5565432 25655543 577777642 34899999999777654
Q ss_pred ----HHHHHHHHHhc
Q 048660 163 ----GYELLKKIKES 173 (213)
Q Consensus 163 ----G~e~~~~ir~~ 173 (213)
..|+-+.++..
T Consensus 382 ~rlYS~eFY~ll~~~ 396 (508)
T COG4262 382 GRLYSVEFYRLLSRH 396 (508)
T ss_pred hhhhhHHHHHHHHHh
Confidence 45666666654
No 431
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=40.55 E-value=1.9e+02 Score=23.13 Aligned_cols=81 Identities=7% Similarity=0.033 Sum_probs=48.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~ir 171 (213)
..++||..-...+...+.+.|.+.|++|..+....+.++.+.... ...+..+-+|+ .+.+.. .+++.+.
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~--~~~~~~~~~~~~~~ 75 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI--------GPAAIAVSLDV--TRQDSIDRIVAAAV 75 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh--------CCceEEEEccC--CCHHHHHHHHHHHH
Confidence 347899998888888999998888999887765555554442211 11344455554 343333 3555555
Q ss_pred hcCCCCCCcEEEEe
Q 048660 172 ESSVFREVPVVIMS 185 (213)
Q Consensus 172 ~~~~~~~~pII~lt 185 (213)
+. ...+-+++..
T Consensus 76 ~~--~~~id~li~~ 87 (257)
T PRK07067 76 ER--FGGIDILFNN 87 (257)
T ss_pred HH--cCCCCEEEEC
Confidence 43 2344455544
No 432
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=40.50 E-value=87 Score=31.21 Aligned_cols=83 Identities=16% Similarity=0.163 Sum_probs=49.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc-CCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC----HHH-H
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQIS-SCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT----GYE-L 166 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~-g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~----G~e-~ 166 (213)
.++||+||....+--.|..+|+.. |..+.++.+-+-.++.+.... +....||.||+-=. |+.. .+. .
T Consensus 81 ~~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~------~~~~~~d~IVlSPG-PG~P~~~~d~Gi~ 153 (918)
T PLN02889 81 FVRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYL------YEEKAFDNIVISPG-PGSPTCPADIGIC 153 (918)
T ss_pred cceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhh------hcccCCCEEEECCC-CCCccchHHHHHH
Confidence 369999999999999999999987 888777655322222221000 01236788887533 2211 111 2
Q ss_pred HHHHHhcCCCCCCcEEEEe
Q 048660 167 LKKIKESSVFREVPVVIMS 185 (213)
Q Consensus 167 ~~~ir~~~~~~~~pII~lt 185 (213)
.+.|++. ..+||+.+.
T Consensus 154 ~~~i~~~---~~iPILGIC 169 (918)
T PLN02889 154 LRLLLEC---RDIPILGVC 169 (918)
T ss_pred HHHHHHh---CCCcEEEEc
Confidence 3444432 358888776
No 433
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=40.45 E-value=1.9e+02 Score=23.09 Aligned_cols=85 Identities=8% Similarity=0.041 Sum_probs=47.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHH-HHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYE-LLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e-~~~~ir 171 (213)
+.++||..-...+...+...|.+.|++|..+....+.++.+.... ......+.+..+++-+.+.++ ++..++
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l-------~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 81 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKL-------RQEGIKAHAAPFNVTHKQEVEAAIEHIE 81 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHH-------HhcCCeEEEEecCCCCHHHHHHHHHHHH
Confidence 457899998888888888888888998877654444333221110 101112333333344434333 455665
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+. ...+-+++..+
T Consensus 82 ~~--~~~id~vi~~a 94 (254)
T PRK08085 82 KD--IGPIDVLINNA 94 (254)
T ss_pred Hh--cCCCCEEEECC
Confidence 54 34555666655
No 434
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=40.44 E-value=1.7e+02 Score=23.04 Aligned_cols=33 Identities=3% Similarity=-0.024 Sum_probs=28.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHH
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESGTR 128 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~e 128 (213)
|+|||-..-|...+.+.|++.|+.+....+.++
T Consensus 2 i~iid~g~~n~~~v~~~l~~~g~~~~~~~~~~~ 34 (201)
T PRK13152 2 IALIDYKAGNLNSVAKAFEKIGAINFIAKNPKD 34 (201)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCeEEEECCHHH
Confidence 788898888888999999999999988888653
No 435
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=40.33 E-value=62 Score=26.31 Aligned_cols=53 Identities=19% Similarity=0.189 Sum_probs=37.5
Q ss_pred ceeEEEEeCCC----C--CCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 148 KVNLIITDYTM----P--GMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 148 ~~dlil~D~~m----p--~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
..|.|.+.-.- + .--|+++++++++. .++|++++.+- +.+....++++|++++
T Consensus 131 gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~---~~iPvvAIGGI-~~~n~~~~~~~GA~gi 189 (221)
T PRK06512 131 RPDYLFFGKLGADNKPEAHPRNLSLAEWWAEM---IEIPCIVQAGS-DLASAVEVAETGAEFV 189 (221)
T ss_pred CCCEEEECCCCCCCCCCCCCCChHHHHHHHHh---CCCCEEEEeCC-CHHHHHHHHHhCCCEE
Confidence 45666654322 1 12478888888764 47999999877 4677888999999876
No 436
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=40.28 E-value=1.9e+02 Score=22.96 Aligned_cols=23 Identities=4% Similarity=0.111 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCC
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSED 188 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~ 188 (213)
|..+++.+.+.+ .-.|.++++..
T Consensus 104 ~~~~~~~l~~~g---~~~i~~i~~~~ 126 (268)
T cd01575 104 GRAMARHLLARG---YRRIGFLGARM 126 (268)
T ss_pred HHHHHHHHHHCC---CCcEEEecCCC
Confidence 666777777642 33556666654
No 437
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=40.11 E-value=37 Score=26.77 Aligned_cols=37 Identities=24% Similarity=0.487 Sum_probs=23.6
Q ss_pred CceeEEEEeCCCCCCC-------HHHHHHHHHhcCCCCCCcEEEEec
Q 048660 147 LKVNLIITDYTMPGMT-------GYELLKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 147 ~~~dlil~D~~mp~~~-------G~e~~~~ir~~~~~~~~pII~lt~ 186 (213)
.+.|++++|+.. +++ -..+++.||+. +|.+||++++.
T Consensus 58 ~~a~~~~ld~~~-N~~~~~~~~~~~~fv~~iR~~--hP~tPIllv~~ 101 (178)
T PF14606_consen 58 IDADLIVLDCGP-NMSPEEFRERLDGFVKTIREA--HPDTPILLVSP 101 (178)
T ss_dssp S--SEEEEEESH-HCCTTTHHHHHHHHHHHHHTT---SSS-EEEEE-
T ss_pred CCCCEEEEEeec-CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEec
Confidence 356999999843 233 34477888876 78999999984
No 438
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.00 E-value=82 Score=26.85 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=46.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHH-HhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQ-YLGLDGEQSNVGFDALKVNLIITDYTMPGMTG 163 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~-~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G 163 (213)
-.+.+|+||.....+..-+..+|.+.|..|+.+.+...-+. .++ .-|+|+.-+.-|+.-.
T Consensus 155 l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l~~~~~-------------~ADIvV~AvG~p~~i~ 215 (285)
T PRK14191 155 IKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDLSFYTQ-------------NADIVCVGVGKPDLIK 215 (285)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-------------hCCEEEEecCCCCcCC
Confidence 35789999999999999999999999999988765444343 332 4588888887776543
No 439
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=39.97 E-value=1.8e+02 Score=25.69 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCEEEE--EcCHHHHHHHhhhcCCCCCCCCCCCceeEE------------EEeCCCCCCCHHHHHHHHHh
Q 048660 107 KLIERLLQISSCKVTA--VESGTRALQYLGLDGEQSNVGFDALKVNLI------------ITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 107 ~~l~~~L~~~g~~v~~--a~~g~eal~~l~~~~~~~~~~~~~~~~dli------------l~D~~mp~~~G~e~~~~ir~ 172 (213)
..+.++.+..+.-|.. +.+.++|.+++ + ...|.| .+.+..|...-+.-+...|+
T Consensus 178 ~~l~~~i~~~~IPVI~G~V~t~e~A~~~~-----------~-aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~ 245 (369)
T TIGR01304 178 LNLKEFIGELDVPVIAGGVNDYTTALHLM-----------R-TGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARR 245 (369)
T ss_pred HHHHHHHHHCCCCEEEeCCCCHHHHHHHH-----------H-cCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHH
Q ss_pred cCCCCC----CcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 173 SSVFRE----VPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 173 ~~~~~~----~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
...... +|||+-.+-.+..+..+++.+||+....
T Consensus 246 ~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~i 283 (369)
T TIGR01304 246 DYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVL 283 (369)
T ss_pred HHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeee
No 440
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.97 E-value=2.3e+02 Score=24.02 Aligned_cols=90 Identities=14% Similarity=0.060 Sum_probs=55.6
Q ss_pred EEEEeCCHHHHHHHHHHH----hhcCC---EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 96 VLAVDDSYVDRKLIERLL----QISSC---KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L----~~~g~---~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
|||-|++-...-.+...+ +..++ ..+.+++.+++.+.++ ..+|+|++|= | +--++-+
T Consensus 167 vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~------------~gaDiI~LDn-~---s~e~l~~ 230 (281)
T PRK06106 167 VLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALE------------LGVDAVLLDN-M---TPDTLRE 230 (281)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHH------------cCCCEEEeCC-C---CHHHHHH
Confidence 565555533332233333 33342 4467899999999883 2579999993 3 3233333
Q ss_pred HHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 169 KIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
.+... .... ++..|+.-+.+...+....|+|-+
T Consensus 231 av~~~--~~~~-~leaSGGI~~~ni~~yA~tGVD~I 263 (281)
T PRK06106 231 AVAIV--AGRA-ITEASGRITPETAPAIAASGVDLI 263 (281)
T ss_pred HHHHh--CCCc-eEEEECCCCHHHHHHHHhcCCCEE
Confidence 33322 1223 378899999999999999999754
No 441
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=39.73 E-value=2.9e+02 Score=24.99 Aligned_cols=100 Identities=13% Similarity=0.177 Sum_probs=57.0
Q ss_pred CccEEEEEeC---CH-HHHHHHHHHHhhc-CCEE--EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEe---------
Q 048660 92 KELHVLAVDD---SY-VDRKLIERLLQIS-SCKV--TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD--------- 155 (213)
Q Consensus 92 ~~~~ILvVdD---~~-~~~~~l~~~L~~~-g~~v--~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D--------- 155 (213)
.+..+++||- +. ...+.++.+-+.+ ...+ ..+.+.++|...+.. ..|.|-+-
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a------------Gad~i~vg~g~G~~~~t 302 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA------------GADGLRVGIGPGSICTT 302 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh------------CCCEEEECCCCCcCCcc
Confidence 4567888876 32 2223333333332 2222 246677777776632 23444332
Q ss_pred -----CCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 156 -----YTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 156 -----~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+..| .+.++..+.+......+|||+=.+-....+..+|+.+||+.+..
T Consensus 303 ~~~~~~g~p---~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~ 355 (450)
T TIGR01302 303 RIVAGVGVP---QITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVML 355 (450)
T ss_pred ceecCCCcc---HHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 2222 23444444432213468988888889999999999999988653
No 442
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=39.66 E-value=78 Score=26.92 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=40.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEE-------cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAV-------ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT 162 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a-------~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~ 162 (213)
+|||...+-.+...|.+.|. .+++|... .+.+...+.+ .+.+||+|+--.-+..-|
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i-----------~~~~PDvVIn~AAyt~vD 64 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVI-----------RETRPDVVINAAAYTAVD 64 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHH-----------HhhCCCEEEECccccccc
Confidence 59999999999999999998 55666644 3455555666 455799998655555444
No 443
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=39.52 E-value=66 Score=25.21 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=22.4
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHhhcCCEEEE
Q 048660 92 KELHVLAVDDSYVD---RKLIERLLQISSCKVTA 122 (213)
Q Consensus 92 ~~~~ILvVdD~~~~---~~~l~~~L~~~g~~v~~ 122 (213)
.+-|||||||=-.. ...+.+++++.|..|..
T Consensus 115 ~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vvg 148 (179)
T COG0503 115 PGDRVLIVDDLLATGGTALALIELLEQAGAEVVG 148 (179)
T ss_pred CCCEEEEEecchhcChHHHHHHHHHHHCCCEEEE
Confidence 56799999996444 45566677888887654
No 444
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=39.33 E-value=1.7e+02 Score=23.13 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=42.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCE--EEE-EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCK--VTA-VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~--v~~-a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
..+|.-+|-++......++.+...|+. +.. ..++.+.+. ....||+|+++..++... -++.+.
T Consensus 97 ~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-------------~~~~fD~Ii~~~~~~~~~-~~l~~~ 162 (205)
T PRK13944 97 RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-------------KHAPFDAIIVTAAASTIP-SALVRQ 162 (205)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-------------cCCCccEEEEccCcchhh-HHHHHh
Confidence 348999999999988888888887753 332 344433221 224799999998766543 244555
Q ss_pred HH
Q 048660 170 IK 171 (213)
Q Consensus 170 ir 171 (213)
|+
T Consensus 163 L~ 164 (205)
T PRK13944 163 LK 164 (205)
T ss_pred cC
Confidence 54
No 445
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=39.31 E-value=1.9e+02 Score=24.11 Aligned_cols=60 Identities=20% Similarity=0.279 Sum_probs=37.5
Q ss_pred HHHHhhcCCEEEEEcC-------HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEE
Q 048660 110 ERLLQISSCKVTAVES-------GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVV 182 (213)
Q Consensus 110 ~~~L~~~g~~v~~a~~-------g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII 182 (213)
...+++.|+.|....+ ..+.++.+ ....||++++|.- ..+. +..+.++.. ..+++
T Consensus 46 ~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l-----------~~~~~d~vV~D~y--~~~~-~~~~~~k~~----~~~l~ 107 (279)
T TIGR03590 46 IDLLLSAGFPVYELPDESSRYDDALELINLL-----------EEEKFDILIVDHY--GLDA-DWEKLIKEF----GRKIL 107 (279)
T ss_pred HHHHHHcCCeEEEecCCCchhhhHHHHHHHH-----------HhcCCCEEEEcCC--CCCH-HHHHHHHHh----CCeEE
Confidence 4677889998877644 33455555 4457899999974 4333 355666643 33566
Q ss_pred EEecC
Q 048660 183 IMSSE 187 (213)
Q Consensus 183 ~lt~~ 187 (213)
+++..
T Consensus 108 ~iDD~ 112 (279)
T TIGR03590 108 VIDDL 112 (279)
T ss_pred EEecC
Confidence 66654
No 446
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=39.19 E-value=1e+02 Score=27.69 Aligned_cols=74 Identities=24% Similarity=0.275 Sum_probs=59.2
Q ss_pred hcCCccEEEEEeCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHH
Q 048660 89 ECSKELHVLAVDDSYVDRKLIERLLQISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELL 167 (213)
Q Consensus 89 ~~~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~ 167 (213)
+......||||.-.--....+.+.|.+.||.|. .+.+.+++.+.++ ...-|..+.++.-+...+.+..
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~-----------~~~~d~~~~~v~~~~~~~~d~~ 143 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG-----------VFFVDLGLQNVEADVVTAIDIL 143 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc-----------ccccccccceeeeccccccchh
Confidence 345667899999999999999999999999886 5678888888762 2245777888888888888888
Q ss_pred HHHHhc
Q 048660 168 KKIKES 173 (213)
Q Consensus 168 ~~ir~~ 173 (213)
..+.+.
T Consensus 144 ~~~~~~ 149 (411)
T KOG1203|consen 144 KKLVEA 149 (411)
T ss_pred hhhhhh
Confidence 888875
No 447
>PRK10537 voltage-gated potassium channel; Provisional
Probab=38.99 E-value=2.8e+02 Score=24.67 Aligned_cols=40 Identities=10% Similarity=0.048 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
-..++..+|+. .+++++|+.+.+ .+......+.|+|..+.
T Consensus 316 Nl~ivL~ar~l--~p~~kIIa~v~~--~~~~~~L~~~GaD~VIs 355 (393)
T PRK10537 316 NAFVVLAAKEM--SSDVKTVAAVND--SKNLEKIKRVHPDMIFS 355 (393)
T ss_pred HHHHHHHHHHh--CCCCcEEEEECC--HHHHHHHHhcCCCEEEC
Confidence 34455566765 467888877664 45667778899987654
No 448
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=38.97 E-value=2.1e+02 Score=24.83 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=40.9
Q ss_pred cEEEEEeCCHH-HHHHHHHHHhhcCCEEEEEc---------CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH
Q 048660 94 LHVLAVDDSYV-DRKLIERLLQISSCKVTAVE---------SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG 163 (213)
Q Consensus 94 ~~ILvVdD~~~-~~~~l~~~L~~~g~~v~~a~---------~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G 163 (213)
.|+|||-|... ....+...|+..|..+.... +..++.+.+ ....+|+|| ...+.+-
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~-----------~~~~~D~II---avGGGs~ 89 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLL-----------REFGPDAVL---AVGGGSV 89 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHH-----------HhcCcCEEE---EeCCcHH
Confidence 47888877654 45667788887777665442 233455554 344678876 3467777
Q ss_pred HHHHHHHH
Q 048660 164 YELLKKIK 171 (213)
Q Consensus 164 ~e~~~~ir 171 (213)
+++++.+.
T Consensus 90 ~D~aK~ia 97 (367)
T cd08182 90 LDTAKALA 97 (367)
T ss_pred HHHHHHHH
Confidence 77776664
No 449
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=38.80 E-value=1.9e+02 Score=27.05 Aligned_cols=92 Identities=22% Similarity=0.233 Sum_probs=58.2
Q ss_pred HHHHHHHhhcCCEEEE--EcCHHHHHHHhhhcCCCCCCCCCC---CceeEEEEeCC----CCCCCHHHHHHHHHhcCCCC
Q 048660 107 KLIERLLQISSCKVTA--VESGTRALQYLGLDGEQSNVGFDA---LKVNLIITDYT----MPGMTGYELLKKIKESSVFR 177 (213)
Q Consensus 107 ~~l~~~L~~~g~~v~~--a~~g~eal~~l~~~~~~~~~~~~~---~~~dlil~D~~----mp~~~G~e~~~~ir~~~~~~ 177 (213)
..+...|++.|+.+.. +..|...+..+ .. .++|.|=+|-. ++. + -.+.+.+......-
T Consensus 542 ~~~~~~l~~~G~~ialDdfG~g~ss~~~L-----------~~~~~l~~d~iKid~~~~~~~~~-~-~~~~~~i~~~a~~l 608 (660)
T PRK11829 542 LRLLRELQGLGLLIALDDFGIGYSSLRYL-----------NHLKSLPIHMIKLDKSFVKNLPE-D-DAIARIISCVSDVL 608 (660)
T ss_pred HHHHHHHHhCCCEEEEECCCCchhhHHHH-----------hccCCCCCcEEEECHHHHhcccC-C-HHHHHHHHHHHHHc
Confidence 3445557788987654 67777888887 44 67899988842 222 2 22334433321122
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCe----eeeCCCCCC
Q 048660 178 EVPVVIMSSEDVLTQIDSCLEEGAEE----YIVKPVKLS 212 (213)
Q Consensus 178 ~~pII~lt~~~~~~~~~~~~~~G~~~----~L~KP~~~~ 212 (213)
++. ++..+-.+.+....+.+.|++. |+.||...+
T Consensus 609 ~~~-viaegVEt~~~~~~l~~~g~d~~QGy~~~~P~~~~ 646 (660)
T PRK11829 609 KVR-VMAEGVETEEQRQWLLEHGIQCGQGFLFSPPLPRA 646 (660)
T ss_pred CCe-EEEecCCCHHHHHHHHHcCCCEEecCcccCCCCHH
Confidence 444 4467777888899999999854 578887643
No 450
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=38.77 E-value=1.8e+02 Score=22.96 Aligned_cols=80 Identities=11% Similarity=0.048 Sum_probs=53.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHH-hhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC--CCCCCHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLL-QISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT--MPGMTGYELLKK 169 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L-~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~--mp~~~G~e~~~~ 169 (213)
...|+++|+...+-=.+-.+| -+.|+.+.+..|.+--++.+ ....|+-+|+.-. -|. |+--..+.
T Consensus 18 n~piv~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El-----------~~~NP~~LliSPGPG~P~-DsGIs~~~ 85 (223)
T KOG0026|consen 18 NGPIIVIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEEL-----------KRKNPRGLLISPGPGTPQ-DSGISLQT 85 (223)
T ss_pred cCCEEEEecccchhHHHHHHhhhccCccEEEEecCcccHHHH-----------hhcCCCeEEecCCCCCCc-cccchHHH
Confidence 456899999888877788888 57799999888766666655 3335665665532 244 44444556
Q ss_pred HHhcCCCCCCcEEEEec
Q 048660 170 IKESSVFREVPVVIMSS 186 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~ 186 (213)
|+.. .+.+|++-+.-
T Consensus 86 i~~f--~~~iP~fGvCM 100 (223)
T KOG0026|consen 86 VLEL--GPLVPLFGVCM 100 (223)
T ss_pred HHHh--CCCCceeeeeh
Confidence 6654 57888887654
No 451
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=38.57 E-value=27 Score=25.87 Aligned_cols=40 Identities=10% Similarity=0.264 Sum_probs=23.9
Q ss_pred CCCceeEEEEeCCCCCC----C------HH-HHHHHHHhcCCCCCCcEEEEec
Q 048660 145 DALKVNLIITDYTMPGM----T------GY-ELLKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 145 ~~~~~dlil~D~~mp~~----~------G~-e~~~~ir~~~~~~~~pII~lt~ 186 (213)
...+||+|++-+..-+. + .+ .+++.+++. .++.+|++++.
T Consensus 37 ~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~--~p~~~ii~~~~ 87 (157)
T cd01833 37 LAAKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAA--NPDVKIIVATL 87 (157)
T ss_pred ccCCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHh--CCCeEEEEEeC
Confidence 45689999995544332 1 11 355566654 56777777654
No 452
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=38.50 E-value=1.2e+02 Score=20.70 Aligned_cols=69 Identities=16% Similarity=0.066 Sum_probs=42.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhc--CCEEEE-EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC-CCCCCCHH---
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQIS--SCKVTA-VESGTRALQYLGLDGEQSNVGFDALKVNLIITDY-TMPGMTGY--- 164 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~--g~~v~~-a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~-~mp~~~G~--- 164 (213)
...+|.-||=++...+..++.+... +-++.. ..+. ..... ....||+|++.. .....-..
T Consensus 24 ~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~----~~~~~---------~~~~~D~v~~~~~~~~~~~~~~~~ 90 (112)
T PF12847_consen 24 PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA----EFDPD---------FLEPFDLVICSGFTLHFLLPLDER 90 (112)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC----HGGTT---------TSSCEEEEEECSGSGGGCCHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc----ccCcc---------cCCCCCEEEECCCccccccchhHH
Confidence 4578999999999999999998433 334443 3332 11100 234699999998 33333332
Q ss_pred -HHHHHHHhc
Q 048660 165 -ELLKKIKES 173 (213)
Q Consensus 165 -e~~~~ir~~ 173 (213)
++++.+++.
T Consensus 91 ~~~l~~~~~~ 100 (112)
T PF12847_consen 91 RRVLERIRRL 100 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 456666553
No 453
>PHA02518 ParA-like protein; Provisional
Probab=38.47 E-value=96 Score=24.09 Aligned_cols=13 Identities=31% Similarity=0.120 Sum_probs=9.7
Q ss_pred CccEEEEEeCCHH
Q 048660 92 KELHVLAVDDSYV 104 (213)
Q Consensus 92 ~~~~ILvVdD~~~ 104 (213)
.+.+||+||-|+.
T Consensus 28 ~g~~vlliD~D~q 40 (211)
T PHA02518 28 DGHKVLLVDLDPQ 40 (211)
T ss_pred CCCeEEEEeCCCC
Confidence 3578999997753
No 454
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=38.47 E-value=82 Score=26.32 Aligned_cols=40 Identities=10% Similarity=0.178 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEe
Q 048660 105 DRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155 (213)
Q Consensus 105 ~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D 155 (213)
.-..+...|++.|+.+..+....+.++.+ ....+|+||.=
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~-----------~~~~~D~v~~~ 63 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQL-----------KELGFDRVFNA 63 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHh-----------ccCCCCEEEEe
Confidence 44678888899999998887666666666 33468888864
No 455
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=38.40 E-value=1.7e+02 Score=22.03 Aligned_cols=88 Identities=13% Similarity=0.091 Sum_probs=42.3
Q ss_pred ccEEEEEeCCHHH---HHHHHHHHhhcCCEEEEEc---CHHHHH-HHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH--
Q 048660 93 ELHVLAVDDSYVD---RKLIERLLQISSCKVTAVE---SGTRAL-QYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-- 163 (213)
Q Consensus 93 ~~~ILvVdD~~~~---~~~l~~~L~~~g~~v~~a~---~g~eal-~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-- 163 (213)
+.+|++++-|... .+.+.....+.|..+.... +..+.+ +.+... ....+|+||+|. |+...
T Consensus 28 g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~d~viiDt--~g~~~~~ 97 (173)
T cd03115 28 GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHA--------REENFDVVIVDT--AGRLQID 97 (173)
T ss_pred CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHH--------HhCCCCEEEEEC--cccchhh
Confidence 4689999866432 2234444455565555442 322222 111110 234689999998 44321
Q ss_pred HHHHHHHHhcC--CCCCCcEEEEecCCCH
Q 048660 164 YELLKKIKESS--VFREVPVVIMSSEDVL 190 (213)
Q Consensus 164 ~e~~~~ir~~~--~~~~~pII~lt~~~~~ 190 (213)
-+.++.++... ..+...++++.+....
T Consensus 98 ~~~l~~l~~l~~~~~~~~~~lVv~~~~~~ 126 (173)
T cd03115 98 ENLMEELKKIKRVVKPDEVLLVVDAMTGQ 126 (173)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEECCCCh
Confidence 23344443211 1245556666665444
No 456
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=38.38 E-value=1.9e+02 Score=26.77 Aligned_cols=55 Identities=16% Similarity=0.158 Sum_probs=37.0
Q ss_pred CceeEEEEeCCCCCCC--HHHHHHHHHhcCCCCCCcEEEEec-CCCHHHHHHHHHcCCCeee
Q 048660 147 LKVNLIITDYTMPGMT--GYELLKKIKESSVFREVPVVIMSS-EDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 147 ~~~dlil~D~~mp~~~--G~e~~~~ir~~~~~~~~pII~lt~-~~~~~~~~~~~~~G~~~~L 205 (213)
...|+|.+| .-++-+ -.+.+++||+. ++. ++.+..+ -...+....+.++|+|...
T Consensus 253 aGvd~i~vd-~a~g~~~~~~~~i~~ir~~--~~~-~~~V~aGnV~t~e~a~~li~aGAd~I~ 310 (502)
T PRK07107 253 AGADVLCID-SSEGYSEWQKRTLDWIREK--YGD-SVKVGAGNVVDREGFRYLAEAGADFVK 310 (502)
T ss_pred hCCCeEeec-CcccccHHHHHHHHHHHHh--CCC-CceEEeccccCHHHHHHHHHcCCCEEE
Confidence 358999999 445543 47789999986 332 2333333 3456788899999998753
No 457
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=38.31 E-value=1.4e+02 Score=26.22 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=39.4
Q ss_pred cEEEEEeCCHHH----HHHHHHHHhhcCCEEEEEcC---------HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC
Q 048660 94 LHVLAVDDSYVD----RKLIERLLQISSCKVTAVES---------GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG 160 (213)
Q Consensus 94 ~~ILvVdD~~~~----~~~l~~~L~~~g~~v~~a~~---------g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~ 160 (213)
.++|||-|.... .+.+...|++.|..+..+.. ..++++.+ ....+|+|| ...+
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~D~II---aiGG 96 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVF-----------KASGADYLI---AIGG 96 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHH-----------HhcCCCEEE---EeCC
Confidence 489999876443 33567778877876655532 23455555 344688877 3467
Q ss_pred CCHHHHHHHH
Q 048660 161 MTGYELLKKI 170 (213)
Q Consensus 161 ~~G~e~~~~i 170 (213)
.+-+++++.+
T Consensus 97 GS~iD~aK~i 106 (382)
T PRK10624 97 GSPQDTCKAI 106 (382)
T ss_pred hHHHHHHHHH
Confidence 6777777654
No 458
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=38.22 E-value=2.4e+02 Score=23.69 Aligned_cols=39 Identities=10% Similarity=0.233 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
.++.++++++. -++|||...+-.+.++..+++.+|++.+
T Consensus 222 ~l~~v~~i~~~---~~ipvi~~GGI~~~~da~~~l~aGAd~V 260 (301)
T PRK07259 222 ALRMVYQVYQA---VDIPIIGMGGISSAEDAIEFIMAGASAV 260 (301)
T ss_pred cHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHcCCCce
Confidence 36778888874 3699999999999999999999998764
No 459
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=38.22 E-value=87 Score=24.93 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=42.3
Q ss_pred EEEEEeCC---------HHHHHHHHHHHh-hcCCEEEEEcCHHHHH-HHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CC
Q 048660 95 HVLAVDDS---------YVDRKLIERLLQ-ISSCKVTAVESGTRAL-QYLGLDGEQSNVGFDALKVNLIITDYTMPG-MT 162 (213)
Q Consensus 95 ~ILvVdD~---------~~~~~~l~~~L~-~~g~~v~~a~~g~eal-~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~ 162 (213)
||||+... +.....++.+|+ ..|+.|....+....- +.| ..+|+|++....++ ++
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L-------------~~~Dvvv~~~~~~~~l~ 67 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENL-------------KGYDVVVFYNTGGDELT 67 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCH-------------CT-SEEEEE-SSCCGS-
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHh-------------cCCCEEEEECCCCCcCC
Confidence 56777554 256778889998 7789999887733211 122 26899998887753 33
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEe
Q 048660 163 GYELLKKIKESSVFREVPVVIMS 185 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt 185 (213)
-+..+.|++-- ....++|++=
T Consensus 68 -~~~~~al~~~v-~~Ggglv~lH 88 (217)
T PF06283_consen 68 -DEQRAALRDYV-ENGGGLVGLH 88 (217)
T ss_dssp -HHHHHHHHHHH-HTT-EEEEEG
T ss_pred -HHHHHHHHHHH-HcCCCEEEEc
Confidence 23333333311 1245677764
No 460
>PRK12829 short chain dehydrogenase; Provisional
Probab=38.18 E-value=2.1e+02 Score=22.86 Aligned_cols=85 Identities=16% Similarity=0.176 Sum_probs=48.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
+..++||....-.+...+...|.+.|+.|..+....+.++.+.... ....+..+.+|+.-+. +-.++++.+.
T Consensus 10 ~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~~D~~~~~-~~~~~~~~~~ 81 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARL-------PGAKVTATVADVADPA-QVERVFDTAV 81 (264)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-------hcCceEEEEccCCCHH-HHHHHHHHHH
Confidence 4568999999999999999988888999877654444444332211 1113345666664322 2223455554
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+. ..++-+++..+
T Consensus 82 ~~--~~~~d~vi~~a 94 (264)
T PRK12829 82 ER--FGGLDVLVNNA 94 (264)
T ss_pred HH--hCCCCEEEECC
Confidence 43 23444555433
No 461
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=38.13 E-value=2.2e+02 Score=24.90 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=41.4
Q ss_pred CceeEEEEeC---CCCC--CC--HHHHHHHHHhcCCCCCCcEEEEecCCCH------HHHHHHHHcCCCe-eeeCCCCCC
Q 048660 147 LKVNLIITDY---TMPG--MT--GYELLKKIKESSVFREVPVVIMSSEDVL------TQIDSCLEEGAEE-YIVKPVKLS 212 (213)
Q Consensus 147 ~~~dlil~D~---~mp~--~~--G~e~~~~ir~~~~~~~~pII~lt~~~~~------~~~~~~~~~G~~~-~L~KP~~~~ 212 (213)
...+++|+.. .-+. .+ .+..+..+++. .++|||+.+++... .....+..+||++ ++-|.++++
T Consensus 227 GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~---~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd 303 (335)
T PRK08673 227 GNPNVILCERGIRTFETATRNTLDLSAVPVIKKL---THLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPE 303 (335)
T ss_pred CCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHh---cCCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcc
Confidence 3467999985 2222 22 33455666653 36899998887654 4567888999986 567777664
No 462
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=38.08 E-value=54 Score=23.20 Aligned_cols=31 Identities=35% Similarity=0.264 Sum_probs=19.4
Q ss_pred CCccEEEEEeCCHH---HHHHHHHHHhhcCCEEE
Q 048660 91 SKELHVLAVDDSYV---DRKLIERLLQISSCKVT 121 (213)
Q Consensus 91 ~~~~~ILvVdD~~~---~~~~l~~~L~~~g~~v~ 121 (213)
..+.+||||||--. ....+...|++.|..+.
T Consensus 86 ~~gk~vliVDDvi~tG~Tl~~~~~~L~~~g~~~v 119 (125)
T PF00156_consen 86 IKGKRVLIVDDVIDTGGTLKEAIELLKEAGAKVV 119 (125)
T ss_dssp GTTSEEEEEEEEESSSHHHHHHHHHHHHTTBSEE
T ss_pred ccceeEEEEeeeEcccHHHHHHHHHHHhCCCcEE
Confidence 35679999998543 33444455666676443
No 463
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=38.08 E-value=1.9e+02 Score=23.47 Aligned_cols=57 Identities=28% Similarity=0.388 Sum_probs=43.6
Q ss_pred CceeEEEEeCCCCC-CC--HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 147 LKVNLIITDYTMPG-MT--GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 147 ~~~dlil~D~~mp~-~~--G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..+++|++|+.-=+ +. -.+++..+... ..-|+++=.+-...++...+...|+++.|.
T Consensus 150 ~~~~lIvLDi~aVGt~~G~~~E~l~~~~~~---s~~pVllGGGV~g~Edlel~~~~Gv~gvLv 209 (229)
T COG1411 150 RDPGLIVLDIGAVGTKSGPDYELLTKVLEL---SEHPVLLGGGVGGMEDLELLLGMGVSGVLV 209 (229)
T ss_pred CCCCeEEEEccccccccCCCHHHHHHHHHh---ccCceeecCCcCcHHHHHHHhcCCCceeee
Confidence 46899999997643 34 35678888764 355777777778888999999999999875
No 464
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.03 E-value=1.7e+02 Score=23.41 Aligned_cols=38 Identities=5% Similarity=0.060 Sum_probs=24.7
Q ss_pred ceeEEEEeCCCCC---C---------CHHHHHHHHHhcCCCCCCcEEEEecCC
Q 048660 148 KVNLIITDYTMPG---M---------TGYELLKKIKESSVFREVPVVIMSSED 188 (213)
Q Consensus 148 ~~dlil~D~~mp~---~---------~G~e~~~~ir~~~~~~~~pII~lt~~~ 188 (213)
..-+|++|...++ . .|..+++.+.+. .+..|.++++..
T Consensus 83 ~ipvV~i~~~~~~~~~~~~V~~d~~~~~~~~~~~l~~~---g~~~i~~i~~~~ 132 (273)
T cd06292 83 GLPVVLVNGRAPPPLKVPHVSTDDALAMRLAVRHLVAL---GHRRIGFASGPG 132 (273)
T ss_pred CCCEEEEcCCCCCCCCCCEEEECcHHHHHHHHHHHHHC---CCceEEEEeCCc
Confidence 4558888876543 1 266777777764 367788887653
No 465
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=38.01 E-value=1.7e+02 Score=24.26 Aligned_cols=76 Identities=13% Similarity=0.213 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEE
Q 048660 105 DRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIM 184 (213)
Q Consensus 105 ~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~l 184 (213)
....|..+-++.|.....-.-..++++.+. .+++-..=+.-.+.+-+.+++.+.+. ..|||+=
T Consensus 57 ~~~~L~~~~~~~gi~f~stpfd~~s~d~l~-------------~~~~~~~KIaS~dl~n~~lL~~~A~t----gkPvIlS 119 (241)
T PF03102_consen 57 QHKELFEYCKELGIDFFSTPFDEESVDFLE-------------ELGVPAYKIASGDLTNLPLLEYIAKT----GKPVILS 119 (241)
T ss_dssp HHHHHHHHHHHTT-EEEEEE-SHHHHHHHH-------------HHT-SEEEE-GGGTT-HHHHHHHHTT-----S-EEEE
T ss_pred HHHHHHHHHHHcCCEEEECCCCHHHHHHHH-------------HcCCCEEEeccccccCHHHHHHHHHh----CCcEEEE
Confidence 345677777788988777666777777773 23444555566677888899998864 6799999
Q ss_pred ecCCCHHHHHHHH
Q 048660 185 SSEDVLTQIDSCL 197 (213)
Q Consensus 185 t~~~~~~~~~~~~ 197 (213)
|+-+..+++.++.
T Consensus 120 TG~stl~EI~~Av 132 (241)
T PF03102_consen 120 TGMSTLEEIERAV 132 (241)
T ss_dssp -TT--HHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 9988887766654
No 466
>PRK15482 transcriptional regulator MurR; Provisional
Probab=38.00 E-value=2.4e+02 Score=23.48 Aligned_cols=84 Identities=8% Similarity=-0.020 Sum_probs=51.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEE-EEeCCCCCCCHHHHHHHHHh
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLI-ITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dli-l~D~~mp~~~G~e~~~~ir~ 172 (213)
+-|+=+.........+...|.+.|+.+....+.......... . . .=|++ ++...=-..+-.++++..++
T Consensus 138 I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~-~-------~--~~Dv~i~iS~sg~t~~~~~~~~~a~~ 207 (285)
T PRK15482 138 IQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQA-L-------K--KGDVQIAISYSGSKKEIVLCAEAARK 207 (285)
T ss_pred eEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHhc-C-------C--CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344444667778888888888899988877665543332210 0 1 22443 33332222346667777775
Q ss_pred cCCCCCCcEEEEecCCCHH
Q 048660 173 SSVFREVPVVIMSSEDVLT 191 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~ 191 (213)
. ..++|++|......
T Consensus 208 ~----g~~iI~IT~~~~s~ 222 (285)
T PRK15482 208 Q----GATVIAITSLADSP 222 (285)
T ss_pred C----CCEEEEEeCCCCCc
Confidence 4 58999999976654
No 467
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=37.91 E-value=2.1e+02 Score=24.66 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=44.5
Q ss_pred cEEEEEeCCHHHH---HHHHHHHhhcCCEEEE--E------cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC
Q 048660 94 LHVLAVDDSYVDR---KLIERLLQISSCKVTA--V------ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT 162 (213)
Q Consensus 94 ~~ILvVdD~~~~~---~~l~~~L~~~g~~v~~--a------~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~ 162 (213)
.|+|||-|..... +.+...|+..|..+.. + ++..++.+.+ +...+|+|| .+.+.+
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~-----------~~~~~D~II---avGGGS 88 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIA-----------RDNGADVVI---GIGGGK 88 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHH-----------hhcCCCEEE---EecCch
Confidence 5888888765433 3344556666655421 1 1233344444 445788877 457888
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEe
Q 048660 163 GYELLKKIKESSVFREVPVVIMS 185 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt 185 (213)
-+++++.+--. ..+|+|++.
T Consensus 89 ~iD~aK~ia~~---~~~P~iaIP 108 (351)
T cd08170 89 TLDTAKAVADY---LGAPVVIVP 108 (351)
T ss_pred hhHHHHHHHHH---cCCCEEEeC
Confidence 88888887643 356777763
No 468
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=37.87 E-value=82 Score=26.55 Aligned_cols=38 Identities=11% Similarity=0.208 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
++.+.++++. -++|||...+-.+.++..+++.+|++.+
T Consensus 223 l~~v~~i~~~---~~ipvi~~GGI~s~~da~~~l~~GAd~V 260 (300)
T TIGR01037 223 LRMVYDVYKM---VDIPIIGVGGITSFEDALEFLMAGASAV 260 (300)
T ss_pred HHHHHHHHhc---CCCCEEEECCCCCHHHHHHHHHcCCCce
Confidence 3567777764 3589999999999999999999999874
No 469
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=37.73 E-value=2.8e+02 Score=24.30 Aligned_cols=67 Identities=19% Similarity=0.281 Sum_probs=45.7
Q ss_pred EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC-----C--CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHH
Q 048660 122 AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP-----G--MTGYELLKKIKESSVFREVPVVIMSSEDVLTQID 194 (213)
Q Consensus 122 ~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp-----~--~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~ 194 (213)
.+.+.+++.+... ...|.|.+.-.-| + .-|++.++.+.+. ..+|++++.+-. .+...
T Consensus 246 S~Hs~~e~~~A~~------------~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~---~~iPv~AiGGI~-~~ni~ 309 (347)
T PRK02615 246 STTNPEEMAKAIA------------EGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKE---APIPWFAIGGID-KSNIP 309 (347)
T ss_pred ecCCHHHHHHHHH------------cCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCCC-HHHHH
Confidence 4566777666542 2467776543222 1 2478888888764 368999987765 67788
Q ss_pred HHHHcCCCee
Q 048660 195 SCLEEGAEEY 204 (213)
Q Consensus 195 ~~~~~G~~~~ 204 (213)
.+..+|++++
T Consensus 310 ~l~~~Ga~gV 319 (347)
T PRK02615 310 EVLQAGAKRV 319 (347)
T ss_pred HHHHcCCcEE
Confidence 8999999886
No 470
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=37.68 E-value=1.9e+02 Score=25.19 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCCCCCcEEEEecCCCHHHHHH----HHHcCC--Ceeee
Q 048660 165 ELLKKIKESSVFREVPVVIMSSEDVLTQIDS----CLEEGA--EEYIV 206 (213)
Q Consensus 165 e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~----~~~~G~--~~~L~ 206 (213)
++++.+++.....++|.|+||+..+.+...+ |.++|+ ++||.
T Consensus 227 eA~~~f~~~~~~~~~P~i~LSaGV~~~~F~~~l~~A~~aGa~fsGvL~ 274 (324)
T PRK12399 227 EAAQHFKEQDAATHLPYIYLSAGVSAELFQETLVFAHEAGAKFNGVLC 274 (324)
T ss_pred HHHHHHHHHhhccCCCEEEEcCCCCHHHHHHHHHHHHHcCCCcceEEe
Confidence 5666777655567999999999888776544 557788 78875
No 471
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=37.49 E-value=1.7e+02 Score=22.69 Aligned_cols=42 Identities=21% Similarity=0.134 Sum_probs=31.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCH-HHHHHHh
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESG-TRALQYL 133 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g-~eal~~l 133 (213)
.+.+|||+.--......+..+|.+.|+.+..+..- .+..+.+
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l~~~l 85 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHT 85 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhHHHHH
Confidence 46799999999888888999998899887766543 3333344
No 472
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=37.46 E-value=2.3e+02 Score=23.27 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=40.3
Q ss_pred eEEEEeCCCCCC-CH--HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHH---HcCCCeeee
Q 048660 150 NLIITDYTMPGM-TG--YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCL---EEGAEEYIV 206 (213)
Q Consensus 150 dlil~D~~mp~~-~G--~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~---~~G~~~~L~ 206 (213)
.+|++|+.--++ .| +++++.+++. .++|+|+--+-.+.++..++. ..|+++.+.
T Consensus 165 ~ii~tdI~~dGt~~G~d~~l~~~l~~~---~~~pviasGGv~s~eDl~~l~~l~~~Gv~gviv 224 (243)
T TIGR01919 165 RVVVTDSKKDGLSGGPNELLLEVVAAR---TDAIVAASGGSSLLDDLRAIKYLDEGGVSVAIG 224 (243)
T ss_pred EEEEEecCCcccCCCcCHHHHHHHHhh---CCCCEEEECCcCCHHHHHHHHhhccCCeeEEEE
Confidence 699999987664 44 4577888864 578999888888888887764 458887653
No 473
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=37.44 E-value=2.1e+02 Score=24.17 Aligned_cols=61 Identities=11% Similarity=0.239 Sum_probs=41.4
Q ss_pred CCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCC
Q 048660 117 SCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSED 188 (213)
Q Consensus 117 g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~ 188 (213)
|..+.+..+...++..++...+ ....+.+++.+ .-|...|..++++|.+. .+|+.+++...
T Consensus 110 g~~ILTh~~S~tv~~~l~~A~~------~gk~~~V~v~E-srP~~qG~~la~eL~~~----GI~vtlI~Dsa 170 (275)
T PRK08335 110 GDVIITHSFSSAVLEILKTAKR------KGKRFKVILTE-SAPDYEGLALANELEFL----GIEFEVITDAQ 170 (275)
T ss_pred CCEEEEECCcHHHHHHHHHHHH------cCCceEEEEec-CCCchhHHHHHHHHHHC----CCCEEEEeccH
Confidence 5566666666667766643222 33467877665 45888999999999875 57888777654
No 474
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=37.44 E-value=78 Score=27.10 Aligned_cols=39 Identities=5% Similarity=-0.066 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 165 ELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 165 e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
..+.++++.. ..++|||.+.+-.+.++..+.+.+||+..
T Consensus 229 ~~v~~~~~~~-~~~ipIig~GGI~s~~da~e~i~aGA~~V 267 (310)
T PRK02506 229 ANVRAFYQRL-NPSIQIIGTGGVKTGRDAFEHILCGASMV 267 (310)
T ss_pred HHHHHHHHhc-CCCCCEEEECCCCCHHHHHHHHHcCCCHH
Confidence 3444444432 24799999999999999999999999864
No 475
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=37.42 E-value=1.5e+02 Score=24.59 Aligned_cols=73 Identities=19% Similarity=0.277 Sum_probs=41.2
Q ss_pred EEEEEeCC------HHHHHHHHHHHhhcCCEEEEEcCHHH-HHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHH
Q 048660 95 HVLAVDDS------YVDRKLIERLLQISSCKVTAVESGTR-ALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELL 167 (213)
Q Consensus 95 ~ILvVdD~------~~~~~~l~~~L~~~g~~v~~a~~g~e-al~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~ 167 (213)
+||++-.. ......+...|.+.|+.|........ ..+.+ ....||+|.+-......-....+
T Consensus 2 kIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~-----------~~~~~diih~~~~~~~~~~~~~~ 70 (365)
T cd03825 2 KVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKI-----------EIINADIVHLHWIHGGFLSIEDL 70 (365)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhCh-----------hcccCCEEEEEccccCccCHHHH
Confidence 56666544 33556677778888998776654333 22222 45679999875543333333444
Q ss_pred HHHHhcCCCCCCcEEE
Q 048660 168 KKIKESSVFREVPVVI 183 (213)
Q Consensus 168 ~~ir~~~~~~~~pII~ 183 (213)
..+. ..+|+|+
T Consensus 71 ~~~~-----~~~~~v~ 81 (365)
T cd03825 71 SKLL-----DRKPVVW 81 (365)
T ss_pred HHHH-----cCCCEEE
Confidence 4432 2456554
No 476
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=37.42 E-value=1e+02 Score=24.84 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=47.7
Q ss_pred cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC---CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcC
Q 048660 124 ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG---MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEG 200 (213)
Q Consensus 124 ~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~---~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G 200 (213)
.+..++.+.+...+ -=.++++|+.--+ ..-+++++.+++. ..+|+++=.+-.+.++..++++.|
T Consensus 30 ~dp~~~a~~~~~~g----------~~~i~i~dl~~~~~~~~~n~~~~~~i~~~---~~~pv~~~ggi~~~~d~~~~~~~G 96 (232)
T TIGR03572 30 GDPVNAARIYNAKG----------ADELIVLDIDASKRGREPLFELISNLAEE---CFMPLTVGGGIRSLEDAKKLLSLG 96 (232)
T ss_pred CCHHHHHHHHHHcC----------CCEEEEEeCCCcccCCCCCHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHcC
Confidence 46667776664321 1248888886543 2346678888764 368888877788888888999999
Q ss_pred CCeee
Q 048660 201 AEEYI 205 (213)
Q Consensus 201 ~~~~L 205 (213)
++..+
T Consensus 97 ~~~vi 101 (232)
T TIGR03572 97 ADKVS 101 (232)
T ss_pred CCEEE
Confidence 87664
No 477
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=37.41 E-value=1.4e+02 Score=22.72 Aligned_cols=86 Identities=21% Similarity=0.240 Sum_probs=50.4
Q ss_pred hhhcccCCCcchhhhhhhhcCCccEEEEEeCCHHHHHHHHHHHhhcCCE-EEEE-cCHHHHHHHhhhcCCCCCCCCCCCc
Q 048660 71 KFKETNRGFPFWAMATVAECSKELHVLAVDDSYVDRKLIERLLQISSCK-VTAV-ESGTRALQYLGLDGEQSNVGFDALK 148 (213)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~g~~-v~~a-~~g~eal~~l~~~~~~~~~~~~~~~ 148 (213)
..-+.+.|+..... .........+|..+|-++......+.-++..+.. +... .|. ++.+ ....
T Consensus 34 ~vLDlG~G~G~i~~-~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~---~~~~-----------~~~~ 98 (170)
T PF05175_consen 34 RVLDLGCGSGVISL-ALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDL---FEAL-----------PDGK 98 (170)
T ss_dssp EEEEETSTTSHHHH-HHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESST---TTTC-----------CTTC
T ss_pred eEEEecCChHHHHH-HHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccc---cccc-----------cccc
Confidence 34444555543332 2333445567999999999999999999887754 4433 332 2211 3458
Q ss_pred eeEEEEeCCC--CCCCHHHHHHHHH
Q 048660 149 VNLIITDYTM--PGMTGYELLKKIK 171 (213)
Q Consensus 149 ~dlil~D~~m--p~~~G~e~~~~ir 171 (213)
||+|+++--. ...+|.++.+.+-
T Consensus 99 fD~Iv~NPP~~~~~~~~~~~~~~~i 123 (170)
T PF05175_consen 99 FDLIVSNPPFHAGGDDGLDLLRDFI 123 (170)
T ss_dssp EEEEEE---SBTTSHCHHHHHHHHH
T ss_pred eeEEEEccchhcccccchhhHHHHH
Confidence 9999998532 2234666655543
No 478
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=37.03 E-value=1.9e+02 Score=25.78 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=39.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCE---E-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCK---V-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~---v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
..+|.-||-++...+..++.++..|.. + ....|..+.+..+.. ....||+|++|-
T Consensus 243 a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~---------~~~~fDlVilDP 301 (396)
T PRK15128 243 CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD---------RGEKFDVIVMDP 301 (396)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh---------cCCCCCEEEECC
Confidence 348999999999999999999877752 3 344566666654421 234799999994
No 479
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.99 E-value=1.7e+02 Score=23.01 Aligned_cols=76 Identities=14% Similarity=0.094 Sum_probs=43.1
Q ss_pred EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHH
Q 048660 119 KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLE 198 (213)
Q Consensus 119 ~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~ 198 (213)
-|....+.+++++.++...+ .. +=++.+.+...+..++++.+++.. +.+.+=.-|- -..+....+++
T Consensus 16 ~v~r~~~~~~~~~~~~~~~~--------~G--v~~vqlr~k~~~~~e~~~~~~~~~--~~~~~g~gtv-l~~d~~~~A~~ 82 (187)
T PRK07455 16 AVIRAPDLELGLQMAEAVAA--------GG--MRLIEITWNSDQPAELISQLREKL--PECIIGTGTI-LTLEDLEEAIA 82 (187)
T ss_pred EEEEcCCHHHHHHHHHHHHH--------CC--CCEEEEeCCCCCHHHHHHHHHHhC--CCcEEeEEEE-EcHHHHHHHHH
Confidence 45556677777776643221 11 224455566667888888887652 2221111121 22367788889
Q ss_pred cCCCeeeeC
Q 048660 199 EGAEEYIVK 207 (213)
Q Consensus 199 ~G~~~~L~K 207 (213)
+|++.+++-
T Consensus 83 ~gAdgv~~p 91 (187)
T PRK07455 83 AGAQFCFTP 91 (187)
T ss_pred cCCCEEECC
Confidence 999877553
No 480
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=36.98 E-value=2e+02 Score=22.40 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCC
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDV 189 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~ 189 (213)
|..+++.+++. . ...|.++.....
T Consensus 106 ~~~~~~~l~~~--g-~~~i~~i~~~~~ 129 (264)
T cd01537 106 GYLAGEHLAEK--G-HRRIALLAGPLG 129 (264)
T ss_pred HHHHHHHHHHh--c-CCcEEEEECCCC
Confidence 55666667654 2 556666665544
No 481
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=36.87 E-value=2.5e+02 Score=24.83 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=53.5
Q ss_pred HHHHHHHhhcCCEEEE--EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-------CC--HHHHHHHHHhcC-
Q 048660 107 KLIERLLQISSCKVTA--VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-------MT--GYELLKKIKESS- 174 (213)
Q Consensus 107 ~~l~~~L~~~g~~v~~--a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-------~~--G~e~~~~ir~~~- 174 (213)
..+.+++++.+..|.. +.+.+.|.+.++ ...|.|.+... |+ .. |...+..|.+..
T Consensus 177 ~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~------------aGAD~V~VG~G-~Gs~~~t~~~~g~g~p~~~ai~~~~~ 243 (368)
T PRK08649 177 LNLKEFIYELDVPVIVGGCVTYTTALHLMR------------TGAAGVLVGIG-PGAACTSRGVLGIGVPMATAIADVAA 243 (368)
T ss_pred HHHHHHHHHCCCCEEEeCCCCHHHHHHHHH------------cCCCEEEECCC-CCcCCCCcccCCCCcCHHHHHHHHHH
Confidence 3466667766766654 677888887773 23566655532 22 11 222222222110
Q ss_pred ---------CCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 175 ---------VFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 175 ---------~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
....+|||+=.+-.+..+..+++.+||+...
T Consensus 244 a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm 283 (368)
T PRK08649 244 ARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVM 283 (368)
T ss_pred HHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeec
Confidence 0136899999999999999999999999864
No 482
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=36.84 E-value=2.1e+02 Score=22.60 Aligned_cols=22 Identities=0% Similarity=0.158 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecC
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSE 187 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~ 187 (213)
|..+++.+.+. ....|.++++.
T Consensus 104 g~~~~~~l~~~---g~~~i~~i~~~ 125 (266)
T cd06282 104 ARDVAQALAAL---GHRRIAMLAGR 125 (266)
T ss_pred HHHHHHHHHHc---CcccEEEeccc
Confidence 56667777664 23457777664
No 483
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.63 E-value=2.2e+02 Score=22.76 Aligned_cols=22 Identities=0% Similarity=0.009 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecC
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSE 187 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~ 187 (213)
|..+++.+.+.+ ...|.++++.
T Consensus 104 g~~a~~~l~~~G---~~~i~~l~~~ 125 (269)
T cd06281 104 MRQAVEYLISLG---HRRIALVGGG 125 (269)
T ss_pred HHHHHHHHHHCC---CcEEEEecCc
Confidence 566777777642 3457777664
No 484
>PRK06194 hypothetical protein; Provisional
Probab=36.48 E-value=2.4e+02 Score=23.02 Aligned_cols=37 Identities=11% Similarity=-0.041 Sum_probs=28.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRAL 130 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal 130 (213)
.+|||..-.-.+...+...|.+.|+.|..+....+.+
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~ 43 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDAL 43 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHH
Confidence 5789999888888888888888899887665433333
No 485
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=36.29 E-value=2.5e+02 Score=24.50 Aligned_cols=83 Identities=17% Similarity=0.097 Sum_probs=52.0
Q ss_pred hcCCccEEEEEeCCHHHHH--HHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC--CCCC---
Q 048660 89 ECSKELHVLAVDDSYVDRK--LIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT--MPGM--- 161 (213)
Q Consensus 89 ~~~~~~~ILvVdD~~~~~~--~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~--mp~~--- 161 (213)
...+..+|.+.|..|...- .+..-|.+.|..+....|..-+.-+ .....|.||+... +.+.
T Consensus 176 ~~g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsav~~~m------------~~~~vd~VivGAd~v~~nG~v~ 243 (331)
T TIGR00512 176 EKGRLEHVYADETRPRLQGARLTAWELVQEGIPATLITDSMAAHLM------------KHGEVDAVIVGADRIAANGDTA 243 (331)
T ss_pred HcCCceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcccHHHHHh------------cccCCCEEEEcccEEecCCCEe
Confidence 3456678988888886653 3467788999999888876554433 2335788887542 2322
Q ss_pred --CHHHHHHHHHhcCCCCCCcEEEEec
Q 048660 162 --TGYELLKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 162 --~G~e~~~~ir~~~~~~~~pII~lt~ 186 (213)
-|--.+..+-+ ..++|+++++.
T Consensus 244 nkiGT~~lA~~Ak---~~~vPfyV~a~ 267 (331)
T TIGR00512 244 NKIGTYQLAVLAK---HHGVPFYVAAP 267 (331)
T ss_pred ehhhHHHHHHHHH---HhCCCEEEecc
Confidence 23333333322 24789998866
No 486
>PLN02826 dihydroorotate dehydrogenase
Probab=36.13 E-value=83 Score=28.24 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
.++++.+++.. ..++|||.+.+-.+.++..+.+.+||+.+
T Consensus 328 l~~v~~l~~~~-~~~ipIIgvGGI~sg~Da~e~i~AGAs~V 367 (409)
T PLN02826 328 TEVLREMYRLT-RGKIPLVGCGGVSSGEDAYKKIRAGASLV 367 (409)
T ss_pred HHHHHHHHHHh-CCCCcEEEECCCCCHHHHHHHHHhCCCee
Confidence 55667776642 24799999999999999999999999875
No 487
>KOG3367 consensus Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=36.05 E-value=26 Score=27.62 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=19.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQI 115 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~ 115 (213)
+.+||||||-....+.++.+|+.
T Consensus 125 gK~VliVeDIvdTGrTl~~Lls~ 147 (216)
T KOG3367|consen 125 GKNVLIVEDIVDTGRTLSTLLSH 147 (216)
T ss_pred CCcEEEEEeeccccchHHHHHHH
Confidence 56899999998888888888863
No 488
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=36.01 E-value=4.1e+02 Score=25.72 Aligned_cols=88 Identities=11% Similarity=0.076 Sum_probs=54.8
Q ss_pred HHHHHHHHhhcCCEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC-CCCC-CHHHHHHHHHhcCCCCCCcEE
Q 048660 106 RKLIERLLQISSCKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT-MPGM-TGYELLKKIKESSVFREVPVV 182 (213)
Q Consensus 106 ~~~l~~~L~~~g~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~-mp~~-~G~e~~~~ir~~~~~~~~pII 182 (213)
...+...-+++|.++ +.+.+.+|+-..+.. ..++|=++-. +-.. -..+.+.+|+..- ...+.+|
T Consensus 149 l~~l~~~a~~lGme~LvEvh~~~el~~a~~~------------ga~iiGINnRdL~tf~vd~~~t~~L~~~i-p~~~~~V 215 (695)
T PRK13802 149 LKHLLDLAHELGMTVLVETHTREEIERAIAA------------GAKVIGINARNLKDLKVDVNKYNELAADL-PDDVIKV 215 (695)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhC------------CCCEEEEeCCCCccceeCHHHHHHHHhhC-CCCcEEE
Confidence 344444445689866 478888888777642 2333322221 1111 1245666666542 2345566
Q ss_pred EEecCCCHHHHHHHHHcCCCeeee
Q 048660 183 IMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 183 ~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.-|+-.+.++..++.++|+|++|.
T Consensus 216 sESGI~~~~d~~~l~~~G~davLI 239 (695)
T PRK13802 216 AESGVFGAVEVEDYARAGADAVLV 239 (695)
T ss_pred EcCCCCCHHHHHHHHHCCCCEEEE
Confidence 678888999999999999999986
No 489
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=35.99 E-value=1.4e+02 Score=21.94 Aligned_cols=43 Identities=19% Similarity=0.113 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCCCCCCcEEE--EecCCCHHHHHHHHHcCCCeeee
Q 048660 163 GYELLKKIKESSVFREVPVVI--MSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~--lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+.+++..-|... .+++.+|- .|+.-++....++++.|||+.+.
T Consensus 14 aad~ag~~~~~~-p~~vriIrvpC~Grv~~~~il~Af~~GADGV~V 58 (124)
T PF02662_consen 14 AADLAGVSRLQY-PPNVRIIRVPCSGRVDPEFILRAFEKGADGVLV 58 (124)
T ss_pred HHHHHhhccCCC-CCCeEEEEccCCCccCHHHHHHHHHcCCCEEEE
Confidence 444444444332 23344443 58888999999999999999876
No 490
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=35.96 E-value=1.6e+02 Score=25.40 Aligned_cols=106 Identities=13% Similarity=0.057 Sum_probs=57.4
Q ss_pred EEEEE-eCCHHHHHHHHHHHh--hcCCEEEEEcCHHHHHHHhhhcCC--------CCCCCCCCCceeEEEEeCCCC----
Q 048660 95 HVLAV-DDSYVDRKLIERLLQ--ISSCKVTAVESGTRALQYLGLDGE--------QSNVGFDALKVNLIITDYTMP---- 159 (213)
Q Consensus 95 ~ILvV-dD~~~~~~~l~~~L~--~~g~~v~~a~~g~eal~~l~~~~~--------~~~~~~~~~~~dlil~D~~mp---- 159 (213)
.++.. ||-..+|..++...+ -+|+..+..... .-...|.+|.- .....+-...+.+|+.|+.--
T Consensus 62 ~~~~~~D~m~~~R~~~k~~~k~~~lGh~~vl~~~~-~~y~~L~EW~v~~~~~v~~l~~~~~~~~~~kvIvFDLDgTLi~~ 140 (301)
T TIGR01684 62 QVFSCADDMVDLRAHLKTAFKTSYFGHTFVLFHKP-AMYACLNEWYVFELEEIYNLNLPSKVFEPPHVVVFDLDSTLITD 140 (301)
T ss_pred EEEEcCCcHHHHHHHHHHHhcccccceEEEecCCc-cHHHHHHHHHcccHhhhhhccccccccccceEEEEecCCCCcCC
Confidence 44444 344666777776654 346655544321 11111222210 001122345678999998321
Q ss_pred -------CCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 160 -------GMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 160 -------~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
+-...++++.+++. .+++.+.|+..........-..|.+.|+
T Consensus 141 ~~~v~irdPgV~EaL~~Lkek----GikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 141 EEPVRIRDPRIYDSLTELKKR----GCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred CCccccCCHHHHHHHHHHHHC----CCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 12345678888764 6788888877666555556677887654
No 491
>PRK06057 short chain dehydrogenase; Provisional
Probab=35.93 E-value=2.3e+02 Score=22.68 Aligned_cols=32 Identities=9% Similarity=-0.076 Sum_probs=27.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEc
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVE 124 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~ 124 (213)
+.+|||+.-...+...+...|.+.|++|..+.
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~~~ 38 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVVGD 38 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEEEe
Confidence 45899999998999999999988899887664
No 492
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=35.90 E-value=69 Score=27.60 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
++.++.+++.- ..++|||...+-.+.++..+++.+||+..
T Consensus 267 l~~v~~l~~~~-~~~ipIi~~GGI~t~~da~e~l~aGAd~V 306 (327)
T cd04738 267 TEVLRELYKLT-GGKIPIIGVGGISSGEDAYEKIRAGASLV 306 (327)
T ss_pred HHHHHHHHHHh-CCCCcEEEECCCCCHHHHHHHHHcCCCHH
Confidence 56777777752 23699999999999999999999999764
No 493
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=35.90 E-value=1.2e+02 Score=19.52 Aligned_cols=33 Identities=18% Similarity=0.022 Sum_probs=26.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcC
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVES 125 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~ 125 (213)
+-.+.|+-|++.....+..+.+..||.+.....
T Consensus 26 G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~~~~ 58 (69)
T cd03422 26 GEILEVISDCPQSINNIPIDARNHGYKVLAIEQ 58 (69)
T ss_pred CCEEEEEecCchHHHHHHHHHHHcCCEEEEEEe
Confidence 445777788888999999999999999976543
No 494
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=35.88 E-value=93 Score=24.25 Aligned_cols=11 Identities=18% Similarity=0.145 Sum_probs=4.7
Q ss_pred HHHHHcCCCee
Q 048660 194 DSCLEEGAEEY 204 (213)
Q Consensus 194 ~~~~~~G~~~~ 204 (213)
..+.+.|+.-.
T Consensus 97 ~~~~~~g~~~~ 107 (202)
T cd04726 97 KAAKKYGKEVQ 107 (202)
T ss_pred HHHHHcCCeEE
Confidence 33444454433
No 495
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=35.86 E-value=3.3e+02 Score=24.47 Aligned_cols=69 Identities=9% Similarity=0.019 Sum_probs=43.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC-EE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSC-KV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~-~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
.+|.-+|-++...+..+..++..|. .+ ....|..+.+.... +....||+|++|- |-....+.++.|.
T Consensus 320 ~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~---------~~~~~fD~Vi~dP--Pr~g~~~~~~~l~ 388 (443)
T PRK13168 320 AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP---------WALGGFDKVLLDP--PRAGAAEVMQALA 388 (443)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh---------hhcCCCCEEEECc--CCcChHHHHHHHH
Confidence 5899999999988888888876664 23 23455544442210 0224689999985 4333335667776
Q ss_pred hc
Q 048660 172 ES 173 (213)
Q Consensus 172 ~~ 173 (213)
+.
T Consensus 389 ~~ 390 (443)
T PRK13168 389 KL 390 (443)
T ss_pred hc
Confidence 53
No 496
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=35.68 E-value=2.3e+02 Score=25.11 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=25.1
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 177 REVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 177 ~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
.++|||+-.+-.+..+..+++..||+.+
T Consensus 284 ~~i~viasGGI~~g~Dv~kalaLGAd~V 311 (392)
T cd02808 284 DRVSLIASGGLRTGADVAKALALGADAV 311 (392)
T ss_pred CCCeEEEECCCCCHHHHHHHHHcCCCee
Confidence 4689999888899999999999999875
No 497
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=35.60 E-value=2.1e+02 Score=22.61 Aligned_cols=80 Identities=15% Similarity=0.254 Sum_probs=37.9
Q ss_pred CccEEEEEeC--CHHH-HHHHHHHHhhcCCEEEEE--cC-HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC----
Q 048660 92 KELHVLAVDD--SYVD-RKLIERLLQISSCKVTAV--ES-GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM---- 161 (213)
Q Consensus 92 ~~~~ILvVdD--~~~~-~~~l~~~L~~~g~~v~~a--~~-g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~---- 161 (213)
.+.++++.+. ++.. ...++.++ ..+.+.... .+ ..+.++.+.. ...-+|++|...+..
T Consensus 28 ~g~~~~~~~~~~~~~~~~~~i~~l~-~~~~dgii~~~~~~~~~~~~~~~~-----------~~ipvv~~~~~~~~~~~v~ 95 (259)
T cd01542 28 NGYQMLLMNTNFSIEKEIEALELLA-RQKVDGIILLATTITDEHREAIKK-----------LNVPVVVVGQDYPGISSVV 95 (259)
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCCHHHHHHHhc-----------CCCCEEEEeccCCCCCEEE
Confidence 3567766643 3332 34455544 345433322 22 2344555532 234466666543321
Q ss_pred -C----HHHHHHHHHhcCCCCCCcEEEEec
Q 048660 162 -T----GYELLKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 162 -~----G~e~~~~ir~~~~~~~~pII~lt~ 186 (213)
| |..+++.+.+.+ ...|.++++
T Consensus 96 ~d~~~~~~~~~~~l~~~g---~~~i~~v~~ 122 (259)
T cd01542 96 YDDYGAGYELGEYLAQQG---HKNIAYLGV 122 (259)
T ss_pred ECcHHHHHHHHHHHHHcC---CCcEEEEcC
Confidence 2 566777776642 334555543
No 498
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=35.52 E-value=2.8e+02 Score=23.65 Aligned_cols=88 Identities=11% Similarity=0.082 Sum_probs=51.5
Q ss_pred HHHHHHHHhhcCC---EEEEEcCHH----HHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC--CCHHHHHHHHHhcC--
Q 048660 106 RKLIERLLQISSC---KVTAVESGT----RALQYLGLDGEQSNVGFDALKVNLIITDYTMPG--MTGYELLKKIKESS-- 174 (213)
Q Consensus 106 ~~~l~~~L~~~g~---~v~~a~~g~----eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~--~~G~e~~~~ir~~~-- 174 (213)
...++.+-+..+. .+..+++.+ +|++.++. ....+|.|.+| +|.+ .+..+.++++++.-
T Consensus 171 ~~A~~~~~~~~p~~~~i~vevdt~~~~v~eal~~~~~---------~~~~~d~I~lD-n~~~~~G~~~~~~~~~~~~l~~ 240 (302)
T cd01571 171 VEAWKAFDETYPEDVPRIALIDTFNDEKEEALKAAKA---------LGDKLDGVRLD-TPSSRRGVFRYLIREVRWALDI 240 (302)
T ss_pred HHHHHHHHHHCCCcCCeEEEEeecCcchHHHHHHHHH---------hCCCCcEEEEC-CCCCCCCCHHHHHHHHHHHHHh
Confidence 3444555444442 233444433 67776632 11257999999 4431 23555555555421
Q ss_pred -CCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 175 -VFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 175 -~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
..+++ .|..|+.-+.+......+.|+|-|
T Consensus 241 ~g~~~~-~ieaSGgI~~~~i~~~a~~gvD~i 270 (302)
T cd01571 241 RGYKHV-KIFVSGGLDEEDIKELEDVGVDAF 270 (302)
T ss_pred CCCCCe-EEEEeCCCCHHHHHHHHHcCCCEE
Confidence 12344 577888889999999999998765
No 499
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=35.45 E-value=2.5e+02 Score=22.98 Aligned_cols=95 Identities=12% Similarity=0.096 Sum_probs=57.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeE-EEEeCCCCCC--------CH
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNL-IITDYTMPGM--------TG 163 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dl-il~D~~mp~~--------~G 163 (213)
|++.|-.......+...+++.|.....+ .+..+.++.+.. ...+. .++-+ +|.. +.
T Consensus 108 iiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~-----------~~~~~vy~~s~-~g~tG~~~~~~~~~ 175 (242)
T cd04724 108 LIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAE-----------LASGFIYYVSR-TGVTGARTELPDDL 175 (242)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHh-----------hCCCCEEEEeC-CCCCCCccCCChhH
Confidence 5555656655556777778888755432 223445554421 11222 33332 3321 24
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+.++++|+. .++||++=.+-.+.+...++.++ +|+++.
T Consensus 176 ~~~i~~lr~~---~~~pI~vggGI~~~e~~~~~~~~-ADgvVv 214 (242)
T cd04724 176 KELIKRIRKY---TDLPIAVGFGISTPEQAAEVAKY-ADGVIV 214 (242)
T ss_pred HHHHHHHHhc---CCCcEEEEccCCCHHHHHHHHcc-CCEEEE
Confidence 5667777763 47898887777777788888888 998865
No 500
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=35.43 E-value=1.4e+02 Score=21.51 Aligned_cols=44 Identities=30% Similarity=0.388 Sum_probs=22.1
Q ss_pred eeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHH
Q 048660 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLE 198 (213)
Q Consensus 149 ~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~ 198 (213)
+| |++|+..|. ...+.++...+. .+|+|+-|..-+.++.....+
T Consensus 68 ~D-VvIDfT~p~-~~~~~~~~~~~~----g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 68 AD-VVIDFTNPD-AVYDNLEYALKH----GVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp -S-EEEEES-HH-HHHHHHHHHHHH----T-EEEEE-SSSHHHHHHHHHH
T ss_pred CC-EEEEcCChH-HhHHHHHHHHhC----CCCEEEECCCCCHHHHHHHHH
Confidence 67 666988664 334455555543 567777554444444444444
Done!