Query 048660
Match_columns 213
No_of_seqs 242 out of 1417
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 20:36:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 100.0 1.5E-29 5.1E-34 190.4 12.3 111 91-212 10-121 (134)
2 3gl9_A Response regulator; bet 99.9 4.3E-24 1.5E-28 156.2 14.3 108 94-212 3-110 (122)
3 2lpm_A Two-component response 99.9 2.1E-26 7.2E-31 170.7 -0.9 104 91-212 6-110 (123)
4 3t6k_A Response regulator rece 99.9 1.9E-23 6.6E-28 155.5 12.6 109 93-212 4-112 (136)
5 3mm4_A Histidine kinase homolo 99.9 4.7E-23 1.6E-27 164.6 13.3 119 92-210 60-184 (206)
6 3h1g_A Chemotaxis protein CHEY 99.9 1.2E-22 4.1E-27 149.5 12.9 110 93-212 5-115 (129)
7 2r25_B Osmosensing histidine p 99.9 1.1E-22 3.7E-27 150.8 12.5 113 93-212 2-115 (133)
8 3f6p_A Transcriptional regulat 99.9 1.3E-22 4.6E-27 147.6 12.3 105 94-212 3-107 (120)
9 3rqi_A Response regulator prot 99.9 6.9E-23 2.3E-27 160.4 11.5 107 93-212 7-113 (184)
10 3m6m_D Sensory/regulatory prot 99.9 2.3E-22 7.9E-27 151.0 12.9 110 92-212 13-124 (143)
11 3gt7_A Sensor protein; structu 99.9 8.2E-22 2.8E-26 149.6 14.4 110 92-212 6-115 (154)
12 1dbw_A Transcriptional regulat 99.9 1.7E-21 5.7E-26 142.5 14.4 107 93-212 3-109 (126)
13 3eod_A Protein HNR; response r 99.9 1.8E-21 6.2E-26 142.9 14.0 108 92-212 6-114 (130)
14 3lua_A Response regulator rece 99.9 7.8E-22 2.7E-26 146.8 11.8 109 93-212 4-115 (140)
15 3luf_A Two-component system re 99.9 7.9E-22 2.7E-26 163.1 12.6 112 91-212 122-233 (259)
16 1jbe_A Chemotaxis protein CHEY 99.9 2.7E-21 9.1E-26 141.4 13.9 109 93-212 4-113 (128)
17 3heb_A Response regulator rece 99.9 2.1E-21 7.3E-26 146.5 13.3 118 93-212 4-123 (152)
18 3crn_A Response regulator rece 99.9 1.9E-21 6.5E-26 143.6 12.6 107 93-212 3-109 (132)
19 1srr_A SPO0F, sporulation resp 99.9 1.8E-21 6.2E-26 141.7 12.3 106 94-212 4-109 (124)
20 1i3c_A Response regulator RCP1 99.9 4.1E-21 1.4E-25 144.8 14.6 116 93-212 8-125 (149)
21 3n0r_A Response regulator; sig 99.9 6.8E-23 2.3E-27 172.1 5.3 105 92-212 159-265 (286)
22 2pl1_A Transcriptional regulat 99.9 2.8E-21 9.7E-26 139.8 13.0 106 94-212 1-106 (121)
23 3kto_A Response regulator rece 99.9 1E-21 3.6E-26 145.7 10.7 107 93-212 6-114 (136)
24 1mb3_A Cell division response 99.9 1.3E-21 4.3E-26 142.2 10.6 108 94-212 2-109 (124)
25 3i42_A Response regulator rece 99.9 9.2E-22 3.1E-26 143.9 9.6 108 93-212 3-110 (127)
26 1p6q_A CHEY2; chemotaxis, sign 99.9 1.7E-21 5.9E-26 142.6 11.0 109 93-212 6-115 (129)
27 3hv2_A Response regulator/HD d 99.9 3.2E-21 1.1E-25 145.9 12.3 109 91-212 12-121 (153)
28 3hdv_A Response regulator; PSI 99.9 5E-21 1.7E-25 141.6 13.0 110 92-212 6-115 (136)
29 3r0j_A Possible two component 99.9 2.2E-21 7.6E-26 158.7 12.3 108 92-212 22-129 (250)
30 3ilh_A Two component response 99.9 4.3E-21 1.5E-25 143.0 12.7 116 91-212 7-127 (146)
31 1tmy_A CHEY protein, TMY; chem 99.9 3.3E-21 1.1E-25 139.4 11.5 106 94-212 3-109 (120)
32 3kht_A Response regulator; PSI 99.9 5.9E-21 2E-25 142.6 13.1 109 92-211 4-115 (144)
33 4e7p_A Response regulator; DNA 99.9 9.7E-21 3.3E-25 142.7 13.7 109 91-212 18-128 (150)
34 1k68_A Phytochrome response re 99.9 1E-20 3.5E-25 139.6 13.6 116 93-212 2-119 (140)
35 1xhf_A DYE resistance, aerobic 99.9 9E-21 3.1E-25 137.7 12.8 106 93-212 3-108 (123)
36 3grc_A Sensor protein, kinase; 99.9 1.2E-21 4.3E-26 145.5 8.1 110 92-212 5-115 (140)
37 3jte_A Response regulator rece 99.9 1.3E-20 4.4E-25 140.5 13.6 109 93-212 3-111 (143)
38 1zgz_A Torcad operon transcrip 99.9 1.2E-20 4E-25 136.8 13.0 105 94-212 3-107 (122)
39 3hdg_A Uncharacterized protein 99.9 3.6E-21 1.2E-25 142.5 10.4 108 92-212 6-113 (137)
40 1dz3_A Stage 0 sporulation pro 99.8 1.4E-20 4.9E-25 138.2 13.4 108 94-213 3-112 (130)
41 3snk_A Response regulator CHEY 99.8 5.2E-22 1.8E-26 147.0 5.7 108 92-212 13-121 (135)
42 3b2n_A Uncharacterized protein 99.8 6.4E-21 2.2E-25 140.9 11.6 106 94-212 4-111 (133)
43 3cfy_A Putative LUXO repressor 99.8 5.6E-21 1.9E-25 142.2 11.1 106 94-212 5-110 (137)
44 2ayx_A Sensor kinase protein R 99.8 2.3E-21 7.8E-26 159.7 9.6 109 91-212 127-235 (254)
45 3hzh_A Chemotaxis response reg 99.8 1E-20 3.6E-25 143.9 12.2 110 92-212 35-145 (157)
46 3f6c_A Positive transcription 99.8 3.2E-21 1.1E-25 142.1 8.9 106 94-212 2-108 (134)
47 3nhm_A Response regulator; pro 99.8 5.9E-21 2E-25 140.4 10.2 107 93-212 4-110 (133)
48 2qzj_A Two-component response 99.8 8.9E-21 3.1E-25 140.9 11.2 106 93-212 4-109 (136)
49 1yio_A Response regulatory pro 99.8 6.5E-21 2.2E-25 151.2 11.1 107 93-212 4-110 (208)
50 3lte_A Response regulator; str 99.8 1.5E-20 5E-25 138.2 12.1 109 92-212 5-113 (132)
51 3c3m_A Response regulator rece 99.8 1E-20 3.5E-25 140.6 11.4 108 94-212 4-111 (138)
52 2a9o_A Response regulator; ess 99.8 1.8E-20 6E-25 135.2 12.1 105 94-212 2-106 (120)
53 3dzd_A Transcriptional regulat 99.8 2.6E-21 9E-26 167.9 8.8 105 95-212 2-106 (368)
54 3cnb_A DNA-binding response re 99.8 2.5E-20 8.6E-25 138.4 13.0 110 92-212 7-118 (143)
55 2jba_A Phosphate regulon trans 99.8 2.7E-21 9.1E-26 141.0 7.5 108 94-212 3-110 (127)
56 1k66_A Phytochrome response re 99.8 1.7E-20 5.7E-25 140.1 12.0 118 92-212 5-126 (149)
57 1dcf_A ETR1 protein; beta-alph 99.8 2.6E-20 8.8E-25 137.9 12.6 109 92-212 6-117 (136)
58 1mvo_A PHOP response regulator 99.8 1.5E-20 5E-25 138.8 11.1 107 93-212 3-109 (136)
59 4dad_A Putative pilus assembly 99.8 3.5E-21 1.2E-25 144.3 7.5 110 91-212 18-129 (146)
60 2qxy_A Response regulator; reg 99.8 3.2E-20 1.1E-24 138.1 12.6 106 93-212 4-109 (142)
61 3eul_A Possible nitrate/nitrit 99.8 2.7E-20 9.1E-25 140.5 12.1 109 91-212 13-123 (152)
62 2zay_A Response regulator rece 99.8 1.5E-20 5.1E-25 140.7 10.6 110 92-212 7-116 (147)
63 2rjn_A Response regulator rece 99.8 6.7E-20 2.3E-24 138.5 13.8 108 92-212 6-114 (154)
64 3a10_A Response regulator; pho 99.8 1.8E-20 6.1E-25 134.7 9.7 104 94-212 2-105 (116)
65 2qvg_A Two component response 99.8 2.5E-20 8.5E-25 138.8 10.7 116 92-212 6-123 (143)
66 1a04_A Nitrate/nitrite respons 99.8 3.4E-20 1.2E-24 147.8 12.0 107 93-212 5-113 (215)
67 3cg4_A Response regulator rece 99.8 1E-20 3.6E-25 140.6 8.0 110 92-212 6-115 (142)
68 3eq2_A Probable two-component 99.8 1.9E-20 6.6E-25 163.0 10.9 105 93-210 5-109 (394)
69 1qkk_A DCTD, C4-dicarboxylate 99.8 6.9E-20 2.3E-24 138.6 12.5 107 93-212 3-109 (155)
70 1zh2_A KDP operon transcriptio 99.8 3.8E-20 1.3E-24 133.6 10.5 105 94-212 2-106 (121)
71 3h5i_A Response regulator/sens 99.8 1.2E-20 4.1E-25 140.6 8.1 107 93-212 5-112 (140)
72 3q9s_A DNA-binding response re 99.8 2.9E-20 1E-24 152.5 10.9 106 93-212 37-142 (249)
73 1w25_A Stalked-cell differenti 99.8 3.2E-20 1.1E-24 164.3 11.9 108 94-212 2-109 (459)
74 3cz5_A Two-component response 99.8 1.7E-19 5.7E-24 136.2 14.2 107 93-212 5-113 (153)
75 3kyj_B CHEY6 protein, putative 99.8 3.5E-20 1.2E-24 138.8 10.1 108 91-212 11-123 (145)
76 2qr3_A Two-component system re 99.8 7.2E-20 2.5E-24 135.6 11.7 107 93-212 3-114 (140)
77 3cg0_A Response regulator rece 99.8 5.3E-20 1.8E-24 136.3 10.9 108 91-212 7-116 (140)
78 3kcn_A Adenylate cyclase homol 99.8 8.4E-20 2.9E-24 137.7 11.8 107 93-212 4-111 (151)
79 3t8y_A CHEB, chemotaxis respon 99.8 1.6E-19 5.4E-24 138.5 13.3 108 91-212 23-134 (164)
80 3cu5_A Two component transcrip 99.8 3.7E-20 1.3E-24 138.4 9.4 106 94-212 3-111 (141)
81 3n53_A Response regulator rece 99.8 1.2E-20 4.2E-25 140.3 6.6 108 93-212 3-110 (140)
82 1kgs_A DRRD, DNA binding respo 99.8 5E-20 1.7E-24 147.6 10.4 106 94-212 3-108 (225)
83 2jk1_A HUPR, hydrogenase trans 99.8 1.5E-19 5.1E-24 134.3 11.9 105 94-212 2-107 (139)
84 1ny5_A Transcriptional regulat 99.8 8.6E-20 2.9E-24 159.3 11.1 106 94-212 1-106 (387)
85 1ys7_A Transcriptional regulat 99.8 4.2E-20 1.5E-24 148.7 8.4 107 93-212 7-113 (233)
86 1s8n_A Putative antiterminator 99.8 5.9E-20 2E-24 145.6 8.9 106 93-212 13-119 (205)
87 2gkg_A Response regulator homo 99.8 1E-19 3.5E-24 132.1 9.1 107 94-212 6-113 (127)
88 3eqz_A Response regulator; str 99.8 6.3E-20 2.2E-24 134.9 8.0 106 93-212 3-113 (135)
89 3bre_A Probable two-component 99.8 6.5E-20 2.2E-24 157.0 9.2 109 93-212 18-127 (358)
90 2j48_A Two-component sensor ki 99.8 3.9E-19 1.3E-23 126.9 10.2 105 94-212 2-106 (119)
91 2qsj_A DNA-binding response re 99.8 3E-19 1E-23 134.8 9.2 107 93-212 3-112 (154)
92 2oqr_A Sensory transduction pr 99.8 4.4E-19 1.5E-23 142.6 9.9 105 94-212 5-109 (230)
93 2qv0_A Protein MRKE; structura 99.8 9.6E-19 3.3E-23 130.2 11.0 106 92-212 8-115 (143)
94 2gwr_A DNA-binding response re 99.8 3.5E-19 1.2E-23 144.4 9.3 106 93-212 5-110 (238)
95 2pln_A HP1043, response regula 99.8 1.7E-18 6E-23 128.0 12.1 104 90-211 15-120 (137)
96 2rdm_A Response regulator rece 99.8 1.4E-18 4.9E-23 127.3 11.0 106 92-212 4-111 (132)
97 3c97_A Signal transduction his 99.8 4.1E-19 1.4E-23 132.1 7.7 106 93-212 10-118 (140)
98 3c3w_A Two component transcrip 99.8 9.5E-20 3.3E-24 146.9 4.4 106 94-212 2-109 (225)
99 3luf_A Two-component system re 99.8 4.9E-19 1.7E-23 146.3 8.6 101 94-210 5-106 (259)
100 3klo_A Transcriptional regulat 99.8 9.9E-20 3.4E-24 146.5 3.8 108 92-212 6-117 (225)
101 3sy8_A ROCR; TIM barrel phosph 99.8 3.8E-19 1.3E-23 155.5 7.2 108 93-212 3-116 (400)
102 1p2f_A Response regulator; DRR 99.8 3.6E-18 1.2E-22 136.5 11.9 103 94-212 3-105 (220)
103 2b4a_A BH3024; flavodoxin-like 99.8 9.9E-19 3.4E-23 129.5 7.4 105 91-212 13-119 (138)
104 1dc7_A NTRC, nitrogen regulati 99.8 1.9E-20 6.6E-25 135.5 -2.9 107 93-212 3-109 (124)
105 2hqr_A Putative transcriptiona 99.8 1.1E-17 3.7E-22 134.0 12.8 102 94-212 1-103 (223)
106 1qo0_D AMIR; binding protein, 99.7 1.8E-18 6.2E-23 136.0 7.7 103 92-212 11-113 (196)
107 1a2o_A CHEB methylesterase; ba 99.7 3.7E-17 1.3E-21 140.8 12.9 104 93-210 3-110 (349)
108 2vyc_A Biodegradative arginine 99.7 3.2E-17 1.1E-21 153.9 7.6 105 95-212 2-120 (755)
109 1w25_A Stalked-cell differenti 99.3 8E-11 2.7E-15 103.8 14.0 107 92-211 151-257 (459)
110 3cwo_X Beta/alpha-barrel prote 99.2 7.6E-12 2.6E-16 100.2 2.6 78 118-208 6-83 (237)
111 3n75_A LDC, lysine decarboxyla 97.4 8.6E-05 2.9E-09 69.2 3.5 90 106-210 19-108 (715)
112 2ayx_A Sensor kinase protein R 97.4 0.00026 8.8E-09 57.3 5.9 53 92-162 10-62 (254)
113 3cwo_X Beta/alpha-barrel prote 96.6 0.0036 1.2E-07 49.0 6.0 69 124-205 130-201 (237)
114 2yxb_A Coenzyme B12-dependent 96.2 0.055 1.9E-06 40.8 10.2 102 92-206 17-127 (161)
115 3q7r_A Transcriptional regulat 95.7 0.15 5.1E-06 35.4 9.6 94 92-211 11-105 (121)
116 1ccw_A Protein (glutamate muta 95.0 0.19 6.6E-06 36.6 9.2 100 94-206 4-118 (137)
117 1wv2_A Thiazole moeity, thiazo 95.0 0.2 6.8E-06 40.8 9.9 82 109-206 127-215 (265)
118 1y80_A Predicted cobalamin bin 94.2 0.27 9.4E-06 38.3 8.9 99 93-205 88-195 (210)
119 3ezx_A MMCP 1, monomethylamine 93.9 0.28 9.4E-06 38.7 8.4 99 93-205 92-201 (215)
120 2i2x_B MTAC, methyltransferase 92.7 0.92 3.2E-05 36.6 9.9 98 92-205 122-228 (258)
121 3q58_A N-acetylmannosamine-6-p 92.6 0.84 2.9E-05 36.2 9.4 84 107-206 119-209 (229)
122 2htm_A Thiazole biosynthesis p 92.3 0.22 7.6E-06 40.6 5.6 81 111-206 118-206 (268)
123 3igs_A N-acetylmannosamine-6-p 91.3 1.4 4.9E-05 34.9 9.4 84 107-206 119-209 (232)
124 2xij_A Methylmalonyl-COA mutas 89.7 2.7 9.4E-05 39.2 10.9 103 91-206 602-713 (762)
125 1req_A Methylmalonyl-COA mutas 89.3 2.1 7.1E-05 39.8 9.7 103 91-206 594-705 (727)
126 3qja_A IGPS, indole-3-glycerol 88.6 4 0.00014 33.2 10.1 98 95-206 138-241 (272)
127 3ffs_A Inosine-5-monophosphate 88.2 10 0.00035 32.6 12.9 101 93-205 156-273 (400)
128 1xrs_B D-lysine 5,6-aminomutas 87.2 2.3 8E-05 34.5 7.8 100 93-206 120-240 (262)
129 1r8j_A KAIA; circadian clock p 85.2 13 0.00043 30.3 10.9 83 92-187 8-90 (289)
130 3fkq_A NTRC-like two-domain pr 83.3 2.3 7.9E-05 35.9 6.4 59 91-160 19-80 (373)
131 3rht_A (gatase1)-like protein; 82.2 0.58 2E-05 38.0 2.0 50 93-155 4-57 (259)
132 3f4w_A Putative hexulose 6 pho 81.7 6.7 0.00023 29.9 8.0 98 95-206 79-186 (211)
133 3ovp_A Ribulose-phosphate 3-ep 81.7 4.3 0.00015 32.0 7.0 56 148-206 134-196 (228)
134 3o63_A Probable thiamine-phosp 81.6 9.1 0.00031 30.5 8.9 71 122-206 141-218 (243)
135 1yad_A Regulatory protein TENI 81.5 16 0.00055 28.0 10.3 73 117-205 110-190 (221)
136 3fwz_A Inner membrane protein 81.2 12 0.00041 26.4 10.4 94 93-206 30-124 (140)
137 3kp1_A D-ornithine aminomutase 80.6 4.3 0.00015 37.3 7.2 100 93-206 602-717 (763)
138 2oo3_A Protein involved in cat 80.3 4.9 0.00017 32.9 7.0 86 92-186 112-199 (283)
139 3bul_A Methionine synthase; tr 80.0 10 0.00034 34.3 9.5 98 93-205 98-209 (579)
140 3vnd_A TSA, tryptophan synthas 79.5 1.5 5.1E-05 35.7 3.6 48 162-211 81-134 (267)
141 3nav_A Tryptophan synthase alp 79.1 2.3 8E-05 34.6 4.7 48 162-211 83-136 (271)
142 1xi3_A Thiamine phosphate pyro 78.1 20 0.00067 27.1 9.7 74 116-205 107-188 (215)
143 3l4e_A Uncharacterized peptida 77.9 14 0.00047 28.5 8.7 77 93-186 27-121 (206)
144 1geq_A Tryptophan synthase alp 77.6 4.5 0.00015 31.8 5.9 42 163-207 68-115 (248)
145 4h08_A Putative hydrolase; GDS 77.4 9.1 0.00031 28.4 7.4 85 92-186 19-119 (200)
146 4fo4_A Inosine 5'-monophosphat 77.2 32 0.0011 29.0 13.1 101 92-205 119-238 (366)
147 3l9w_A Glutathione-regulated p 77.0 14 0.00048 31.7 9.3 94 93-206 27-121 (413)
148 2v82_A 2-dehydro-3-deoxy-6-pho 76.7 6.3 0.00021 30.2 6.4 78 111-206 95-175 (212)
149 2w6r_A Imidazole glycerol phos 76.6 12 0.00041 29.6 8.3 41 163-206 188-228 (266)
150 1qpo_A Quinolinate acid phosph 76.3 17 0.00059 29.6 9.2 95 95-205 167-267 (284)
151 3u81_A Catechol O-methyltransf 74.7 21 0.00073 27.0 9.1 82 72-160 62-146 (221)
152 1ka9_F Imidazole glycerol phos 74.4 12 0.00041 29.3 7.6 53 151-206 48-103 (252)
153 2lci_A Protein OR36; structura 74.0 13 0.00045 25.2 6.5 34 100-133 84-117 (134)
154 3c3y_A Pfomt, O-methyltransfer 73.8 29 0.00098 26.8 10.2 94 71-172 73-169 (237)
155 4dzz_A Plasmid partitioning pr 73.4 12 0.00042 27.7 7.2 54 92-157 29-84 (206)
156 3dr5_A Putative O-methyltransf 73.2 11 0.00038 29.1 7.1 68 92-172 80-151 (221)
157 3gjy_A Spermidine synthase; AP 72.8 23 0.00078 29.4 9.2 71 92-173 112-189 (317)
158 1tqx_A D-ribulose-5-phosphate 72.6 11 0.00036 29.8 6.8 82 112-206 109-200 (227)
159 3khj_A Inosine-5-monophosphate 72.6 42 0.0014 28.2 11.6 101 93-205 117-234 (361)
160 3bo9_A Putative nitroalkan dio 71.8 22 0.00077 29.3 9.0 81 110-205 117-203 (326)
161 3usb_A Inosine-5'-monophosphat 71.8 52 0.0018 29.0 13.3 102 93-206 268-387 (511)
162 2p10_A MLL9387 protein; putati 71.8 34 0.0012 28.0 9.7 79 114-206 160-258 (286)
163 3tsm_A IGPS, indole-3-glycerol 71.7 38 0.0013 27.3 11.6 85 108-206 160-248 (272)
164 2ekc_A AQ_1548, tryptophan syn 71.5 3.1 0.00011 33.5 3.5 44 163-208 81-130 (262)
165 2tps_A Protein (thiamin phosph 71.1 29 0.00098 26.5 9.1 68 123-205 123-198 (227)
166 1h1y_A D-ribulose-5-phosphate 70.9 15 0.00052 28.5 7.4 56 148-206 138-200 (228)
167 2z6i_A Trans-2-enoyl-ACP reduc 69.8 27 0.00093 28.7 9.1 79 112-205 105-189 (332)
168 1thf_D HISF protein; thermophI 69.1 20 0.00069 27.9 7.9 55 149-206 165-223 (253)
169 3llv_A Exopolyphosphatase-rela 68.9 26 0.0009 24.3 10.0 53 148-206 70-122 (141)
170 1geq_A Tryptophan synthase alp 68.7 17 0.00058 28.3 7.3 95 95-206 110-219 (248)
171 1qop_A Tryptophan synthase alp 68.5 5.1 0.00017 32.3 4.2 46 163-210 81-132 (268)
172 1i1q_B Anthranilate synthase c 68.3 13 0.00045 27.9 6.3 33 94-126 1-33 (192)
173 3ceu_A Thiamine phosphate pyro 68.1 12 0.00041 28.7 6.2 67 122-204 94-169 (210)
174 1eep_A Inosine 5'-monophosphat 67.0 58 0.002 27.6 12.6 92 103-206 179-284 (404)
175 2w6r_A Imidazole glycerol phos 66.8 15 0.00051 29.0 6.7 40 164-206 63-102 (266)
176 3qz6_A HPCH/HPAI aldolase; str 66.6 22 0.00075 28.5 7.6 86 109-206 6-94 (261)
177 1xm3_A Thiazole biosynthesis p 66.1 8.3 0.00028 31.0 5.0 42 162-206 165-206 (264)
178 2kx7_A Sensor-like histidine k 65.3 14 0.00049 25.9 5.3 48 92-156 6-53 (117)
179 4e5v_A Putative THUA-like prot 65.2 7.7 0.00026 31.6 4.7 59 92-162 3-72 (281)
180 4avf_A Inosine-5'-monophosphat 65.2 71 0.0024 27.9 13.8 100 93-205 241-359 (490)
181 3r2g_A Inosine 5'-monophosphat 64.8 15 0.0005 31.2 6.4 56 148-206 112-168 (361)
182 2gjl_A Hypothetical protein PA 64.7 57 0.0019 26.6 11.7 80 111-205 112-199 (328)
183 3l0g_A Nicotinate-nucleotide p 64.4 17 0.00057 30.0 6.5 67 119-204 210-276 (300)
184 1ujp_A Tryptophan synthase alp 63.7 9.3 0.00032 30.9 4.9 44 163-209 79-128 (271)
185 4fxs_A Inosine-5'-monophosphat 63.6 16 0.00054 32.2 6.7 56 148-206 243-299 (496)
186 1y0e_A Putative N-acetylmannos 63.1 15 0.00052 28.1 5.9 41 163-206 163-203 (223)
187 2i7c_A Spermidine synthase; tr 62.7 57 0.0019 26.0 9.8 70 92-173 101-181 (283)
188 1vzw_A Phosphoribosyl isomeras 62.6 20 0.00067 27.9 6.5 55 149-206 160-221 (244)
189 2qfm_A Spermine synthase; sper 62.5 63 0.0022 27.3 10.0 68 94-170 212-296 (364)
190 3vk5_A MOEO5; TIM barrel, tran 62.5 24 0.00081 28.9 7.0 56 149-206 200-255 (286)
191 2v5j_A 2,4-dihydroxyhept-2-ENE 62.4 61 0.0021 26.2 10.4 59 147-206 59-117 (287)
192 1uir_A Polyamine aminopropyltr 62.3 58 0.002 26.4 9.6 69 93-173 101-184 (314)
193 3inp_A D-ribulose-phosphate 3- 61.4 7.4 0.00025 31.1 3.8 58 148-206 156-222 (246)
194 4avf_A Inosine-5'-monophosphat 60.9 20 0.00069 31.5 6.9 56 148-206 241-297 (490)
195 1ka9_F Imidazole glycerol phos 60.7 16 0.00054 28.5 5.7 53 151-206 169-224 (252)
196 3bw2_A 2-nitropropane dioxygen 60.7 67 0.0023 26.7 10.0 77 114-205 142-235 (369)
197 3c6k_A Spermine synthase; sper 60.3 31 0.0011 29.4 7.7 57 94-159 229-295 (381)
198 3o07_A Pyridoxine biosynthesis 60.0 9.2 0.00031 31.3 4.1 41 163-206 186-228 (291)
199 2yw3_A 4-hydroxy-2-oxoglutarat 60.0 55 0.0019 25.0 8.9 66 122-205 110-177 (207)
200 1iy9_A Spermidine synthase; ro 59.9 36 0.0012 27.1 7.8 69 93-173 99-178 (275)
201 4gud_A Imidazole glycerol phos 59.3 29 0.00099 26.2 6.9 34 95-128 4-37 (211)
202 1x1o_A Nicotinate-nucleotide p 59.3 71 0.0024 25.9 11.0 91 95-204 168-265 (286)
203 1p0k_A Isopentenyl-diphosphate 58.8 21 0.00073 29.6 6.4 45 160-206 235-279 (349)
204 2fli_A Ribulose-phosphate 3-ep 58.5 14 0.00047 28.2 4.9 56 149-205 132-196 (220)
205 2xxa_A Signal recognition part 58.5 20 0.0007 30.9 6.4 53 93-156 129-191 (433)
206 1h5y_A HISF; histidine biosynt 58.4 32 0.0011 26.4 7.1 40 163-205 65-104 (253)
207 2vws_A YFAU, 2-keto-3-deoxy su 58.2 69 0.0024 25.5 10.5 59 147-206 38-96 (267)
208 4adt_A Pyridoxine biosynthetic 58.1 54 0.0018 26.8 8.6 41 163-206 195-237 (297)
209 3usb_A Inosine-5'-monophosphat 58.0 27 0.00094 30.8 7.3 56 148-206 268-324 (511)
210 2avd_A Catechol-O-methyltransf 58.0 57 0.0019 24.4 10.1 71 93-172 94-167 (229)
211 1h5y_A HISF; histidine biosynt 57.8 31 0.0011 26.5 7.0 41 163-206 186-226 (253)
212 4fo4_A Inosine 5'-monophosphat 57.4 62 0.0021 27.2 9.1 56 148-206 120-176 (366)
213 1fy2_A Aspartyl dipeptidase; s 57.0 57 0.0019 25.3 8.3 74 93-186 31-121 (229)
214 3kts_A Glycerol uptake operon 56.8 9.5 0.00033 29.4 3.5 54 146-206 125-178 (192)
215 3tr6_A O-methyltransferase; ce 56.5 60 0.002 24.2 10.6 92 72-172 68-162 (225)
216 2c6q_A GMP reductase 2; TIM ba 56.4 86 0.003 26.1 12.6 105 93-210 132-256 (351)
217 3r75_A Anthranilate/para-amino 56.3 25 0.00087 32.1 6.9 88 92-202 445-541 (645)
218 3jy6_A Transcriptional regulat 55.5 64 0.0022 24.8 8.5 98 92-204 36-153 (276)
219 1thf_D HISF protein; thermophI 55.4 37 0.0013 26.3 7.1 41 163-206 62-102 (253)
220 1o4u_A Type II quinolic acid p 55.3 20 0.00068 29.3 5.4 93 96-204 166-265 (285)
221 3tfw_A Putative O-methyltransf 55.3 70 0.0024 24.7 12.3 91 71-173 66-159 (248)
222 3tdn_A FLR symmetric alpha-bet 55.1 35 0.0012 26.5 6.9 40 163-205 67-106 (247)
223 3hvb_A Protein FIMX; EAL phosp 54.9 39 0.0013 28.6 7.6 93 109-213 327-429 (437)
224 3cbg_A O-methyltransferase; cy 54.7 68 0.0023 24.4 10.0 93 71-172 75-170 (232)
225 1sui_A Caffeoyl-COA O-methyltr 54.3 74 0.0025 24.7 12.3 73 93-173 104-179 (247)
226 1qdl_B Protein (anthranilate s 54.2 4.9 0.00017 30.5 1.6 31 96-126 4-34 (195)
227 2y88_A Phosphoribosyl isomeras 54.0 26 0.00087 27.1 5.8 53 151-206 166-224 (244)
228 1rpx_A Protein (ribulose-phosp 54.0 18 0.00063 27.9 4.9 58 148-206 140-206 (230)
229 1twd_A Copper homeostasis prot 53.4 55 0.0019 26.2 7.7 92 100-205 97-196 (256)
230 3iwt_A 178AA long hypothetical 53.1 23 0.00078 26.3 5.2 49 103-158 39-91 (178)
231 4eyg_A Twin-arginine transloca 52.7 75 0.0026 25.5 8.8 84 95-191 141-236 (368)
232 3ctl_A D-allulose-6-phosphate 52.7 23 0.00079 27.8 5.3 90 108-207 97-195 (231)
233 2b2c_A Spermidine synthase; be 52.6 93 0.0032 25.3 9.3 70 92-173 131-211 (314)
234 1vc4_A Indole-3-glycerol phosp 52.6 11 0.00039 30.0 3.5 97 95-206 131-235 (254)
235 1j8m_F SRP54, signal recogniti 52.5 42 0.0014 27.2 7.1 53 93-156 126-188 (297)
236 1dxe_A 2-dehydro-3-deoxy-galac 52.4 84 0.0029 24.7 10.3 86 109-206 10-97 (256)
237 3oix_A Putative dihydroorotate 52.3 25 0.00087 29.4 5.8 41 164-205 262-302 (345)
238 1jcn_A Inosine monophosphate d 52.0 1.2E+02 0.0041 26.4 11.9 90 105-209 283-390 (514)
239 1qv9_A F420-dependent methylen 51.7 31 0.0011 27.6 5.8 59 148-210 64-122 (283)
240 2e6f_A Dihydroorotate dehydrog 51.6 26 0.00089 28.4 5.7 39 164-204 232-270 (314)
241 1wa3_A 2-keto-3-deoxy-6-phosph 51.6 17 0.00058 27.5 4.3 78 111-205 98-176 (205)
242 2p9j_A Hypothetical protein AQ 51.5 60 0.0021 22.8 7.8 39 164-206 42-80 (162)
243 2bdq_A Copper homeostasis prot 51.5 58 0.002 25.6 7.4 95 100-207 100-207 (224)
244 1qop_A Tryptophan synthase alp 51.4 57 0.002 25.9 7.6 40 164-206 194-233 (268)
245 2ift_A Putative methylase HI07 51.2 64 0.0022 23.9 7.6 68 94-172 77-149 (201)
246 2px0_A Flagellar biosynthesis 50.7 51 0.0017 26.7 7.3 92 92-195 133-231 (296)
247 1jcn_A Inosine monophosphate d 50.4 53 0.0018 28.8 7.9 57 147-206 266-323 (514)
248 3o4f_A Spermidine synthase; am 50.3 18 0.00062 29.7 4.5 69 93-173 107-187 (294)
249 4ef8_A Dihydroorotate dehydrog 50.1 20 0.00068 30.2 4.8 40 164-205 265-304 (354)
250 2o07_A Spermidine synthase; st 49.6 62 0.0021 26.2 7.7 68 93-172 119-197 (304)
251 1gox_A (S)-2-hydroxy-acid oxid 49.6 1.1E+02 0.0039 25.4 10.8 86 107-205 215-307 (370)
252 1jub_A Dihydroorotate dehydrog 49.5 33 0.0011 27.8 6.0 41 164-205 229-269 (311)
253 4gx0_A TRKA domain protein; me 49.4 66 0.0022 28.3 8.4 52 148-206 192-243 (565)
254 4f3h_A Fimxeal, putative uncha 49.4 66 0.0022 24.8 7.6 90 109-210 148-248 (250)
255 1yxy_A Putative N-acetylmannos 49.4 27 0.00091 27.0 5.2 85 106-206 121-214 (234)
256 3zwt_A Dihydroorotate dehydrog 49.2 29 0.001 29.3 5.7 41 164-205 285-325 (367)
257 3hv8_A Protein FIMX; EAL phosp 48.9 30 0.001 27.2 5.5 93 109-213 158-260 (268)
258 1lst_A Lysine, arginine, ornit 48.6 57 0.0019 24.1 7.0 52 93-156 111-162 (239)
259 3iwp_A Copper homeostasis prot 48.5 96 0.0033 25.3 8.5 78 117-207 39-131 (287)
260 1t0b_A THUA-like protein; treh 48.5 54 0.0018 26.0 7.0 77 93-184 7-103 (252)
261 3bwc_A Spermidine synthase; SA 48.4 1E+02 0.0036 24.7 11.0 71 92-173 118-199 (304)
262 1tqj_A Ribulose-phosphate 3-ep 48.3 34 0.0012 26.6 5.7 58 148-206 134-200 (230)
263 1vcf_A Isopentenyl-diphosphate 47.9 35 0.0012 28.0 6.0 42 162-205 242-283 (332)
264 1xj5_A Spermidine synthase 1; 47.7 96 0.0033 25.5 8.7 71 92-173 143-224 (334)
265 3lab_A Putative KDPG (2-keto-3 47.6 46 0.0016 26.0 6.2 38 162-202 50-87 (217)
266 4af0_A Inosine-5'-monophosphat 47.6 18 0.0006 32.5 4.2 55 148-205 293-348 (556)
267 2hmt_A YUAA protein; RCK, KTN, 47.5 63 0.0022 21.9 8.1 53 148-205 70-122 (144)
268 1lnq_A MTHK channels, potassiu 47.1 1.1E+02 0.0038 24.7 9.4 89 96-205 140-229 (336)
269 2hnk_A SAM-dependent O-methylt 47.1 91 0.0031 23.6 8.6 78 93-172 85-169 (239)
270 3ffs_A Inosine-5-monophosphate 47.0 37 0.0013 29.1 6.1 55 148-206 156-211 (400)
271 1inl_A Spermidine synthase; be 46.8 1.1E+02 0.0038 24.5 9.1 69 93-173 114-194 (296)
272 2fpo_A Methylase YHHF; structu 46.6 86 0.003 23.2 8.5 67 94-172 78-146 (202)
273 4fxs_A Inosine-5'-monophosphat 46.6 1.5E+02 0.0051 25.9 12.9 101 93-206 243-362 (496)
274 3r2g_A Inosine 5'-monophosphat 46.5 1.3E+02 0.0045 25.2 13.6 96 93-205 112-226 (361)
275 2f6u_A GGGPS, (S)-3-O-geranylg 46.3 33 0.0011 27.1 5.3 50 148-208 33-85 (234)
276 2yzr_A Pyridoxal biosynthesis 46.1 22 0.00074 29.8 4.3 41 163-206 228-270 (330)
277 2pyy_A Ionotropic glutamate re 45.9 57 0.002 23.7 6.5 49 92-156 111-159 (228)
278 2vpt_A Lipolytic enzyme; ester 45.9 34 0.0012 25.6 5.2 88 92-188 4-130 (215)
279 3qiv_A Short-chain dehydrogena 45.5 99 0.0034 23.5 8.7 85 93-186 9-94 (253)
280 3sz8_A 2-dehydro-3-deoxyphosph 45.5 38 0.0013 27.6 5.6 71 127-212 151-247 (285)
281 1o2d_A Alcohol dehydrogenase, 45.4 61 0.0021 27.1 7.2 78 94-185 41-147 (371)
282 3sho_A Transcriptional regulat 45.3 86 0.0029 22.8 8.8 95 95-209 41-140 (187)
283 1k1e_A Deoxy-D-mannose-octulos 45.1 81 0.0028 22.8 7.2 39 164-206 41-79 (180)
284 3c3p_A Methyltransferase; NP_9 45.1 91 0.0031 23.0 10.2 66 93-173 81-149 (210)
285 3h2s_A Putative NADH-flavin re 44.8 44 0.0015 24.8 5.8 30 95-124 2-31 (224)
286 3axs_A Probable N(2),N(2)-dime 44.6 89 0.003 26.5 8.1 78 94-188 78-160 (392)
287 3hm2_A Precorrin-6Y C5,15-meth 44.4 81 0.0028 22.2 7.4 67 92-173 48-116 (178)
288 3lyl_A 3-oxoacyl-(acyl-carrier 44.3 69 0.0024 24.4 7.0 85 93-186 5-90 (247)
289 1f76_A Dihydroorotate dehydrog 44.2 30 0.001 28.4 5.0 40 164-204 276-315 (336)
290 1nvm_A HOA, 4-hydroxy-2-oxoval 43.8 57 0.002 27.0 6.7 46 159-206 65-112 (345)
291 2agk_A 1-(5-phosphoribosyl)-5- 43.7 30 0.001 27.6 4.7 55 150-206 173-235 (260)
292 3tjx_A Dihydroorotate dehydrog 43.6 25 0.00086 29.3 4.4 39 165-205 266-304 (354)
293 1rd5_A Tryptophan synthase alp 43.5 46 0.0016 26.2 5.9 41 163-206 189-229 (262)
294 3gnl_A Uncharacterized protein 43.4 92 0.0031 24.6 7.5 93 91-201 43-141 (244)
295 4gj1_A 1-(5-phosphoribosyl)-5- 43.2 82 0.0028 24.6 7.2 53 150-205 167-222 (243)
296 3sju_A Keto reductase; short-c 43.0 80 0.0027 24.8 7.3 86 92-186 23-109 (279)
297 1ujp_A Tryptophan synthase alp 43.0 64 0.0022 25.8 6.7 38 164-206 191-228 (271)
298 2yxd_A Probable cobalt-precorr 43.0 85 0.0029 22.1 9.3 74 92-185 56-131 (183)
299 1p9l_A Dihydrodipicolinate red 42.3 1.2E+02 0.0042 23.8 8.6 81 95-192 2-83 (245)
300 3ucx_A Short chain dehydrogena 42.2 93 0.0032 24.1 7.5 86 92-186 10-96 (264)
301 3v8b_A Putative dehydrogenase, 42.2 1.1E+02 0.0039 24.0 8.1 85 93-186 28-113 (283)
302 3iwp_A Copper homeostasis prot 42.2 40 0.0014 27.5 5.3 92 101-205 136-236 (287)
303 2nzl_A Hydroxyacid oxidase 1; 42.0 1.4E+02 0.0049 25.1 9.0 86 107-205 242-334 (392)
304 3td9_A Branched chain amino ac 41.8 1.2E+02 0.0041 24.3 8.4 83 94-191 150-243 (366)
305 3lec_A NADB-rossmann superfami 41.8 76 0.0026 24.8 6.8 108 74-199 27-138 (230)
306 3ajx_A 3-hexulose-6-phosphate 41.8 95 0.0032 23.1 7.2 36 165-205 149-184 (207)
307 3snr_A Extracellular ligand-bi 41.8 69 0.0024 25.5 6.8 85 95-194 137-232 (362)
308 1g5t_A COB(I)alamin adenosyltr 41.6 82 0.0028 24.0 6.8 48 145-195 117-169 (196)
309 3eey_A Putative rRNA methylase 41.5 77 0.0026 23.0 6.6 54 93-158 47-103 (197)
310 2f6u_A GGGPS, (S)-3-O-geranylg 41.3 69 0.0024 25.2 6.4 53 150-206 165-217 (234)
311 2c6q_A GMP reductase 2; TIM ba 41.3 63 0.0022 26.9 6.6 55 148-205 132-187 (351)
312 1viz_A PCRB protein homolog; s 41.3 34 0.0012 27.1 4.6 51 148-209 33-86 (240)
313 3k4h_A Putative transcriptiona 41.2 81 0.0028 24.3 7.0 39 149-190 93-143 (292)
314 2pt6_A Spermidine synthase; tr 41.2 1.4E+02 0.0049 24.2 11.1 70 92-173 139-219 (321)
315 3m6w_A RRNA methylase; rRNA me 41.1 66 0.0023 28.0 6.9 54 93-158 126-180 (464)
316 3s83_A Ggdef family protein; s 40.9 13 0.00045 29.1 2.2 91 109-211 144-245 (259)
317 1qo2_A Molecule: N-((5-phospho 40.8 26 0.0009 27.2 3.9 54 149-206 158-222 (241)
318 3r3h_A O-methyltransferase, SA 40.4 52 0.0018 25.5 5.6 94 70-172 62-158 (242)
319 1vrd_A Inosine-5'-monophosphat 40.2 83 0.0029 27.3 7.5 56 148-206 249-305 (494)
320 3qk7_A Transcriptional regulat 40.1 88 0.003 24.4 7.1 37 149-188 89-136 (294)
321 1ep3_A Dihydroorotate dehydrog 40.0 45 0.0015 26.7 5.4 39 164-205 230-268 (311)
322 3p9n_A Possible methyltransfer 39.9 1E+02 0.0035 22.2 10.5 82 93-185 67-153 (189)
323 4e3z_A Putative oxidoreductase 39.5 66 0.0023 25.0 6.2 86 92-186 25-112 (272)
324 3kl4_A SRP54, signal recogniti 39.4 1.6E+02 0.0056 25.2 9.1 55 92-157 124-188 (433)
325 3rot_A ABC sugar transporter, 39.0 76 0.0026 24.7 6.6 66 106-187 22-95 (297)
326 3ek2_A Enoyl-(acyl-carrier-pro 38.9 47 0.0016 25.6 5.2 82 92-186 13-100 (271)
327 3khj_A Inosine-5-monophosphate 38.4 78 0.0027 26.5 6.7 55 148-206 117-172 (361)
328 3g1w_A Sugar ABC transporter; 38.4 1.3E+02 0.0044 23.3 7.9 66 106-187 23-95 (305)
329 3orh_A Guanidinoacetate N-meth 38.3 98 0.0034 23.6 7.0 54 94-158 84-138 (236)
330 3v2g_A 3-oxoacyl-[acyl-carrier 38.2 1.2E+02 0.0043 23.6 7.7 33 91-123 29-61 (271)
331 3tha_A Tryptophan synthase alp 38.0 35 0.0012 27.3 4.3 34 179-212 89-128 (252)
332 2fhp_A Methylase, putative; al 37.9 1.1E+02 0.0037 21.8 9.2 70 93-171 67-139 (187)
333 3i1j_A Oxidoreductase, short c 37.7 70 0.0024 24.3 6.0 89 92-186 13-102 (247)
334 3tqv_A Nicotinate-nucleotide p 37.6 1E+02 0.0034 25.1 7.0 67 119-204 201-267 (287)
335 2l69_A Rossmann 2X3 fold prote 37.5 93 0.0032 21.0 8.3 40 95-134 4-43 (134)
336 3imf_A Short chain dehydrogena 37.5 97 0.0033 23.9 6.9 85 93-186 6-91 (257)
337 2dul_A N(2),N(2)-dimethylguano 37.5 1.8E+02 0.0062 24.3 9.4 77 93-186 71-164 (378)
338 3adn_A Spermidine synthase; am 37.5 24 0.00082 28.6 3.3 69 93-173 107-187 (294)
339 1tv5_A Dhodehase, dihydroorota 37.4 42 0.0014 29.2 4.9 40 164-204 360-399 (443)
340 3tjr_A Short chain dehydrogena 37.4 86 0.0029 25.0 6.7 86 92-186 30-116 (301)
341 3gk5_A Uncharacterized rhodane 37.3 79 0.0027 20.9 5.6 40 94-133 56-95 (108)
342 4gnr_A ABC transporter substra 37.2 1.6E+02 0.0053 23.5 9.1 88 94-196 145-240 (353)
343 3ezl_A Acetoacetyl-COA reducta 37.2 76 0.0026 24.3 6.2 82 92-186 12-99 (256)
344 2hsj_A Putative platelet activ 37.2 27 0.00093 25.8 3.4 90 91-187 32-133 (214)
345 3oid_A Enoyl-[acyl-carrier-pro 37.1 98 0.0034 23.9 6.9 31 93-123 4-34 (258)
346 1jvn_A Glutamine, bifunctional 37.0 1.1E+02 0.0039 27.1 7.9 53 151-206 469-525 (555)
347 1req_B Methylmalonyl-COA mutas 37.0 23 0.00079 32.3 3.3 87 104-207 525-618 (637)
348 3ntv_A MW1564 protein; rossman 36.9 1.3E+02 0.0046 22.6 8.0 86 72-172 75-164 (232)
349 3b0p_A TRNA-dihydrouridine syn 36.9 50 0.0017 27.5 5.2 39 164-205 185-223 (350)
350 3eme_A Rhodanese-like domain p 36.7 80 0.0027 20.6 5.4 38 93-130 56-93 (103)
351 3rc1_A Sugar 3-ketoreductase; 36.7 1.1E+02 0.0039 24.9 7.5 97 91-211 25-124 (350)
352 3lkb_A Probable branched-chain 36.4 1.6E+02 0.0056 23.7 8.5 86 94-194 144-240 (392)
353 3l6u_A ABC-type sugar transpor 36.3 1E+02 0.0035 23.7 6.9 66 106-187 27-98 (293)
354 3zv4_A CIS-2,3-dihydrobiphenyl 36.2 87 0.003 24.6 6.5 83 93-186 5-87 (281)
355 2v25_A Major cell-binding fact 36.1 99 0.0034 22.9 6.6 52 93-156 148-201 (259)
356 1izc_A Macrophomate synthase i 36.0 1.6E+02 0.0055 24.4 8.2 59 148-206 63-123 (339)
357 3gnn_A Nicotinate-nucleotide p 36.0 1.8E+02 0.0061 23.8 10.3 66 120-204 213-278 (298)
358 2q5c_A NTRC family transcripti 35.9 1.4E+02 0.0047 22.5 9.1 43 93-135 4-47 (196)
359 3kjx_A Transcriptional regulat 35.9 1.3E+02 0.0044 24.0 7.6 18 106-123 87-104 (344)
360 1wl8_A GMP synthase [glutamine 35.9 26 0.0009 26.0 3.1 78 95-186 2-80 (189)
361 3paj_A Nicotinate-nucleotide p 35.8 1.9E+02 0.0063 23.9 9.8 91 95-204 204-300 (320)
362 3kr9_A SAM-dependent methyltra 35.8 1.5E+02 0.0052 22.9 7.9 92 91-200 37-134 (225)
363 3dii_A Short-chain dehydrogena 35.7 1.4E+02 0.005 22.6 9.4 80 94-186 3-83 (247)
364 3rkr_A Short chain oxidoreduct 35.6 82 0.0028 24.3 6.1 85 93-186 29-114 (262)
365 3m4x_A NOL1/NOP2/SUN family pr 35.5 1E+02 0.0034 26.8 7.1 53 93-157 130-184 (456)
366 3hcw_A Maltose operon transcri 35.4 84 0.0029 24.5 6.3 22 163-187 119-140 (295)
367 3o26_A Salutaridine reductase; 35.4 1.2E+02 0.0041 23.7 7.2 86 92-187 11-100 (311)
368 3c85_A Putative glutathione-re 35.4 1.2E+02 0.0042 21.8 10.3 52 148-205 105-157 (183)
369 3p19_A BFPVVD8, putative blue 35.2 77 0.0026 24.8 5.9 80 92-186 15-95 (266)
370 3tfo_A Putative 3-oxoacyl-(acy 35.2 91 0.0031 24.4 6.4 38 93-130 4-41 (264)
371 3n74_A 3-ketoacyl-(acyl-carrie 34.9 93 0.0032 23.8 6.4 82 93-186 9-91 (261)
372 3n2l_A OPRT, oprtase, orotate 34.9 1.3E+02 0.0044 23.7 7.1 21 11-31 39-59 (238)
373 1q6o_A Humps, 3-keto-L-gulonat 34.8 36 0.0012 26.0 3.8 55 149-205 131-189 (216)
374 4fc7_A Peroxisomal 2,4-dienoyl 34.6 73 0.0025 25.0 5.7 86 92-186 26-113 (277)
375 3i65_A Dihydroorotate dehydrog 34.6 40 0.0014 29.0 4.4 41 164-205 332-372 (415)
376 3bbl_A Regulatory protein of L 34.6 1.6E+02 0.0053 22.7 8.0 37 149-188 88-135 (287)
377 1wxx_A TT1595, hypothetical pr 34.4 1.9E+02 0.0065 23.9 8.6 55 93-156 231-287 (382)
378 3h5l_A Putative branched-chain 34.2 1.6E+02 0.0056 24.1 8.2 84 94-191 165-259 (419)
379 4eso_A Putative oxidoreductase 34.2 88 0.003 24.2 6.1 82 93-186 8-90 (255)
380 3e3m_A Transcriptional regulat 34.2 1.3E+02 0.0044 24.2 7.4 17 107-123 90-106 (355)
381 3t7c_A Carveol dehydrogenase; 34.0 95 0.0033 24.6 6.4 32 92-123 27-58 (299)
382 3foj_A Uncharacterized protein 34.0 96 0.0033 20.1 5.9 38 93-130 56-93 (100)
383 1wa3_A 2-keto-3-deoxy-6-phosph 33.6 1.3E+02 0.0045 22.2 6.9 52 149-204 36-87 (205)
384 4e6p_A Probable sorbitol dehyd 33.6 1.3E+02 0.0044 23.1 7.0 82 93-186 8-90 (259)
385 3nrc_A Enoyl-[acyl-carrier-pro 33.5 1E+02 0.0034 24.1 6.4 81 93-186 26-111 (280)
386 2rgy_A Transcriptional regulat 33.4 1E+02 0.0034 23.9 6.4 37 149-188 91-138 (290)
387 3hix_A ALR3790 protein; rhodan 33.4 96 0.0033 20.4 5.5 40 94-133 53-93 (106)
388 1ii5_A SLR1257 protein; membra 33.2 1.2E+02 0.0041 22.0 6.6 49 92-156 115-163 (233)
389 3i4f_A 3-oxoacyl-[acyl-carrier 33.2 1E+02 0.0036 23.6 6.4 85 94-187 8-94 (264)
390 1jub_A Dihydroorotate dehydrog 33.1 1.1E+02 0.0037 24.6 6.6 56 148-206 119-191 (311)
391 3lpm_A Putative methyltransfer 33.0 1.4E+02 0.0049 22.9 7.2 51 95-156 74-127 (259)
392 2gpy_A O-methyltransferase; st 32.8 1.5E+02 0.0053 22.1 8.3 69 93-173 78-149 (233)
393 3ic5_A Putative saccharopine d 32.7 1E+02 0.0035 20.0 7.1 39 94-133 6-45 (118)
394 3vzx_A Heptaprenylglyceryl pho 32.5 1.4E+02 0.0049 23.3 6.9 54 149-206 154-207 (228)
395 1f76_A Dihydroorotate dehydrog 32.4 83 0.0028 25.7 5.9 59 148-206 165-244 (336)
396 2dri_A D-ribose-binding protei 32.4 1.7E+02 0.0056 22.3 8.8 64 106-186 20-90 (271)
397 3abi_A Putative uncharacterize 32.4 1.5E+02 0.0051 24.3 7.5 93 91-206 14-106 (365)
398 3k9c_A Transcriptional regulat 32.2 1.6E+02 0.0056 22.6 7.5 10 163-172 114-123 (289)
399 3gaf_A 7-alpha-hydroxysteroid 32.1 95 0.0032 23.9 6.0 37 92-128 11-47 (256)
400 4adt_A Pyridoxine biosynthetic 32.0 2E+02 0.007 23.3 9.0 82 107-204 14-104 (297)
401 3e05_A Precorrin-6Y C5,15-meth 32.0 1.5E+02 0.005 21.6 8.4 95 91-201 62-160 (204)
402 3huu_A Transcription regulator 32.0 1.8E+02 0.0061 22.6 9.1 16 109-124 49-64 (305)
403 3ew7_A LMO0794 protein; Q8Y8U8 31.9 70 0.0024 23.5 5.0 31 95-125 2-32 (221)
404 3inp_A D-ribulose-phosphate 3- 31.5 98 0.0034 24.5 5.9 54 151-206 59-115 (246)
405 3f9i_A 3-oxoacyl-[acyl-carrier 31.5 1.7E+02 0.0057 22.1 7.3 42 92-133 13-54 (249)
406 1qo2_A Molecule: N-((5-phospho 31.4 59 0.002 25.0 4.6 39 164-206 63-101 (241)
407 1yb1_A 17-beta-hydroxysteroid 31.3 1.7E+02 0.0059 22.5 7.5 86 92-186 30-116 (272)
408 3uve_A Carveol dehydrogenase ( 31.3 1.5E+02 0.0051 23.1 7.1 32 92-123 10-41 (286)
409 3f4w_A Putative hexulose 6 pho 31.3 62 0.0021 24.2 4.6 43 162-206 39-83 (211)
410 3f1l_A Uncharacterized oxidore 31.2 1.5E+02 0.005 22.7 7.0 89 92-186 11-100 (252)
411 3grp_A 3-oxoacyl-(acyl carrier 31.2 95 0.0032 24.2 5.9 83 92-186 26-109 (266)
412 2xhz_A KDSD, YRBH, arabinose 5 31.0 1.5E+02 0.0051 21.3 7.3 95 95-209 51-149 (183)
413 4iin_A 3-ketoacyl-acyl carrier 30.9 91 0.0031 24.2 5.7 86 92-186 28-115 (271)
414 3pk0_A Short-chain dehydrogena 30.9 1.2E+02 0.0041 23.4 6.4 86 93-186 10-96 (262)
415 3tb6_A Arabinose metabolism tr 30.7 1.8E+02 0.0061 22.2 8.2 39 148-189 99-148 (298)
416 3e8x_A Putative NAD-dependent 30.7 46 0.0016 25.2 3.8 34 92-125 20-53 (236)
417 3m9w_A D-xylose-binding peripl 30.6 1.6E+02 0.0056 22.9 7.3 42 148-191 83-136 (313)
418 3o74_A Fructose transport syst 30.6 1.2E+02 0.0041 22.9 6.4 38 149-189 83-131 (272)
419 2ioy_A Periplasmic sugar-bindi 30.4 1.7E+02 0.0059 22.4 7.3 15 109-123 23-37 (283)
420 2b78_A Hypothetical protein SM 30.3 1.9E+02 0.0065 24.0 7.9 54 94-156 236-293 (385)
421 4egf_A L-xylulose reductase; s 30.2 1.2E+02 0.004 23.5 6.3 86 93-186 20-106 (266)
422 1w6u_A 2,4-dienoyl-COA reducta 30.2 1.7E+02 0.0058 22.8 7.3 87 92-186 25-112 (302)
423 1zx0_A Guanidinoacetate N-meth 30.1 1.5E+02 0.0053 22.2 6.8 51 94-155 84-135 (236)
424 2qjg_A Putative aldolase MJ040 30.1 1.4E+02 0.0047 23.3 6.7 51 148-205 179-235 (273)
425 3euw_A MYO-inositol dehydrogen 30.0 1.4E+02 0.0048 24.1 6.9 23 189-211 78-100 (344)
426 3egc_A Putative ribose operon 29.9 1.1E+02 0.0038 23.6 6.1 39 148-189 87-136 (291)
427 1vrd_A Inosine-5'-monophosphat 29.7 2.7E+02 0.0092 23.9 10.9 90 104-205 264-367 (494)
428 1wd5_A Hypothetical protein TT 29.7 1.3E+02 0.0044 22.6 6.2 53 92-156 119-177 (208)
429 3evz_A Methyltransferase; NYSG 29.6 1.1E+02 0.0039 22.7 5.9 52 93-156 79-131 (230)
430 4df3_A Fibrillarin-like rRNA/T 29.6 1.8E+02 0.0061 22.6 7.1 71 91-172 100-170 (233)
431 3ged_A Short-chain dehydrogena 29.5 2E+02 0.0069 22.4 7.5 80 94-186 3-83 (247)
432 3l6e_A Oxidoreductase, short-c 29.5 1.5E+02 0.0052 22.4 6.7 81 94-186 4-85 (235)
433 3dm5_A SRP54, signal recogniti 29.4 1.6E+02 0.0055 25.4 7.4 55 92-157 127-191 (443)
434 2igt_A SAM dependent methyltra 29.4 1.4E+02 0.0046 24.5 6.7 54 94-156 176-233 (332)
435 3tox_A Short chain dehydrogena 29.2 1.3E+02 0.0043 23.7 6.3 39 93-131 8-46 (280)
436 2otd_A Glycerophosphodiester p 29.2 1.9E+02 0.0066 22.1 7.6 38 164-206 197-234 (247)
437 3c0k_A UPF0064 protein YCCW; P 29.0 2.5E+02 0.0084 23.3 8.6 55 93-156 243-301 (396)
438 3mti_A RRNA methylase; SAM-dep 28.9 1.2E+02 0.0042 21.6 5.9 53 93-156 44-97 (185)
439 2b7n_A Probable nicotinate-nuc 28.9 2.2E+02 0.0075 22.6 8.7 78 107-204 170-254 (273)
440 1viz_A PCRB protein homolog; s 28.8 1.5E+02 0.0052 23.2 6.6 53 150-206 157-209 (240)
441 1iow_A DD-ligase, DDLB, D-ALA\ 28.8 47 0.0016 26.2 3.7 52 94-156 3-62 (306)
442 1qap_A Quinolinic acid phospho 28.8 2.3E+02 0.008 22.9 11.0 91 95-204 181-277 (296)
443 4dqx_A Probable oxidoreductase 28.8 1.4E+02 0.0047 23.4 6.5 83 92-186 26-109 (277)
444 3duw_A OMT, O-methyltransferas 28.7 1.8E+02 0.006 21.5 13.9 93 71-173 61-156 (223)
445 2jah_A Clavulanic acid dehydro 28.5 1.7E+02 0.0057 22.3 6.8 33 93-125 7-39 (247)
446 3cea_A MYO-inositol 2-dehydrog 28.5 1.8E+02 0.006 23.4 7.2 20 191-210 86-105 (346)
447 3pxx_A Carveol dehydrogenase; 28.1 1.4E+02 0.0047 23.2 6.3 32 93-124 10-41 (287)
448 1gte_A Dihydropyrimidine dehyd 28.1 88 0.003 30.0 5.9 40 164-205 775-814 (1025)
449 3tdn_A FLR symmetric alpha-bet 28.0 12 0.00043 29.2 0.0 39 164-205 189-227 (247)
450 3edm_A Short chain dehydrogena 28.0 1.7E+02 0.0057 22.5 6.8 31 93-123 8-38 (259)
451 2c07_A 3-oxoacyl-(acyl-carrier 27.9 2.1E+02 0.0073 22.2 8.1 32 93-124 44-75 (285)
452 3sc6_A DTDP-4-dehydrorhamnose 27.8 1.6E+02 0.0055 22.6 6.7 31 94-124 6-36 (287)
453 1eep_A Inosine 5'-monophosphat 27.7 1.5E+02 0.0053 24.8 6.9 56 148-206 165-221 (404)
454 1zem_A Xylitol dehydrogenase; 27.7 2E+02 0.007 21.9 7.3 33 93-125 7-39 (262)
455 3r1i_A Short-chain type dehydr 27.7 75 0.0026 25.0 4.7 82 92-186 31-117 (276)
456 3iv3_A Tagatose 1,6-diphosphat 27.5 97 0.0033 25.8 5.4 43 164-206 231-279 (332)
457 2bgk_A Rhizome secoisolaricire 27.4 1.8E+02 0.0061 22.2 6.9 34 93-126 16-49 (278)
458 2gjl_A Hypothetical protein PA 27.4 2.4E+02 0.0083 22.7 9.9 50 147-206 95-144 (328)
459 2iuy_A Avigt4, glycosyltransfe 27.4 1.1E+02 0.0039 24.1 5.9 22 105-126 35-56 (342)
460 1h7n_A 5-aminolaevulinic acid 27.4 82 0.0028 26.3 4.8 49 125-186 241-289 (342)
461 3gk3_A Acetoacetyl-COA reducta 27.3 1.2E+02 0.004 23.5 5.8 85 92-186 24-111 (269)
462 1vlj_A NADH-dependent butanol 27.3 1.7E+02 0.0059 24.6 7.2 65 94-172 44-122 (407)
463 1z0s_A Probable inorganic poly 27.3 73 0.0025 25.8 4.5 70 94-186 30-99 (278)
464 3awd_A GOX2181, putative polyo 27.2 1.7E+02 0.006 22.0 6.7 32 93-124 13-44 (260)
465 1me8_A Inosine-5'-monophosphat 27.2 3.1E+02 0.011 23.8 10.9 100 93-205 254-379 (503)
466 3qvq_A Phosphodiesterase OLEI0 27.2 2.2E+02 0.0074 22.0 7.6 37 165-206 201-237 (252)
467 2h6r_A Triosephosphate isomera 27.2 2.1E+02 0.0071 21.8 10.5 40 165-206 159-198 (219)
468 1hdc_A 3-alpha, 20 beta-hydrox 27.0 2.1E+02 0.0072 21.8 7.7 82 93-186 5-87 (254)
469 3v2h_A D-beta-hydroxybutyrate 27.0 2.2E+02 0.0076 22.1 8.2 86 93-186 25-112 (281)
470 2fvy_A D-galactose-binding per 27.0 2E+02 0.0067 22.2 7.1 66 105-187 20-93 (309)
471 1zk4_A R-specific alcohol dehy 26.7 1.3E+02 0.0043 22.8 5.8 84 93-186 6-90 (251)
472 1yde_A Retinal dehydrogenase/r 26.6 1.5E+02 0.0051 23.0 6.3 41 93-133 9-49 (270)
473 1rd5_A Tryptophan synthase alp 26.6 70 0.0024 25.1 4.3 41 163-207 82-125 (262)
474 1vch_A Phosphoribosyltransfera 26.4 88 0.003 22.7 4.6 29 92-120 119-150 (175)
475 2nli_A Lactate oxidase; flavoe 26.3 1E+02 0.0035 25.8 5.5 87 106-205 218-311 (368)
476 2aef_A Calcium-gated potassium 26.3 2.1E+02 0.0071 21.5 8.3 89 96-205 34-123 (234)
477 3rwb_A TPLDH, pyridoxal 4-dehy 26.2 1.4E+02 0.0047 22.8 6.0 82 93-186 6-88 (247)
478 1kbi_A Cytochrome B2, L-LCR; f 26.2 1.1E+02 0.0038 26.9 5.9 65 127-206 263-370 (511)
479 2as0_A Hypothetical protein PH 26.2 2.8E+02 0.0095 22.9 8.2 55 93-156 240-297 (396)
480 8abp_A L-arabinose-binding pro 26.1 2E+02 0.0069 22.1 7.1 67 106-185 21-89 (306)
481 3hut_A Putative branched-chain 26.0 2E+02 0.0067 22.8 7.1 84 95-193 141-235 (358)
482 3sgz_A Hydroxyacid oxidase 2; 26.0 2.9E+02 0.0098 23.0 11.0 86 107-205 207-299 (352)
483 3ajx_A 3-hexulose-6-phosphate 26.0 78 0.0027 23.6 4.3 43 162-206 39-83 (207)
484 2qr6_A IMP dehydrogenase/GMP r 26.0 2.8E+02 0.0097 23.0 9.0 89 102-206 140-238 (393)
485 1fmc_A 7 alpha-hydroxysteroid 26.0 1.3E+02 0.0044 22.7 5.7 33 93-125 11-43 (255)
486 4ibo_A Gluconate dehydrogenase 25.9 1.2E+02 0.0042 23.6 5.6 86 92-186 25-111 (271)
487 2nv1_A Pyridoxal biosynthesis 25.9 36 0.0012 27.6 2.4 41 163-206 195-237 (305)
488 3rih_A Short chain dehydrogena 25.9 1.1E+02 0.0038 24.3 5.5 83 92-186 40-127 (293)
489 3kux_A Putative oxidoreductase 25.9 1.2E+02 0.004 24.8 5.7 24 188-211 79-102 (352)
490 3ilm_A ALR3790 protein; rhodan 25.9 1.7E+02 0.0058 20.4 5.9 40 94-133 57-97 (141)
491 3ksu_A 3-oxoacyl-acyl carrier 25.7 2.3E+02 0.0078 21.8 7.3 31 93-123 11-41 (262)
492 3i6v_A Periplasmic His/Glu/Gln 25.7 1.5E+02 0.0052 21.8 6.0 48 92-156 106-153 (232)
493 3op4_A 3-oxoacyl-[acyl-carrier 25.6 1.2E+02 0.0043 23.1 5.6 82 93-186 9-91 (248)
494 1pv8_A Delta-aminolevulinic ac 25.6 78 0.0027 26.3 4.4 49 125-186 230-278 (330)
495 3nhv_A BH2092 protein; alpha-b 25.6 1.5E+02 0.0053 20.7 5.7 41 93-133 72-114 (144)
496 3l49_A ABC sugar (ribose) tran 25.5 1.3E+02 0.0043 23.1 5.7 84 92-188 34-135 (291)
497 1mjf_A Spermidine synthase; sp 25.5 2.4E+02 0.0083 22.1 9.7 68 92-173 97-182 (281)
498 2ffh_A Protein (FFH); SRP54, s 25.5 1.3E+02 0.0044 25.8 6.0 54 92-156 125-188 (425)
499 2zbt_A Pyridoxal biosynthesis 25.4 48 0.0017 26.6 3.1 41 163-206 195-237 (297)
500 3d8u_A PURR transcriptional re 25.4 2.1E+02 0.0071 21.6 6.9 37 149-188 83-130 (275)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.96 E-value=1.5e-29 Score=190.40 Aligned_cols=111 Identities=31% Similarity=0.560 Sum_probs=102.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCE-EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCK-VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~-v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
++.+|||||||++.+|..++.+|+.+||. +..|.||.+|++.++ ...||+||+|+.||+|||++++++
T Consensus 10 ~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~-----------~~~~DlillD~~MP~mdG~el~~~ 78 (134)
T 3to5_A 10 NKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLK-----------KGDFDFVVTDWNMPGMQGIDLLKN 78 (134)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH-----------HHCCSEEEEESCCSSSCHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHH-----------hCCCCEEEEcCCCCCCCHHHHHHH
Confidence 45689999999999999999999999996 778999999999984 457999999999999999999999
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
||+....+++|||++|++.+.+...+++++|+++||.|||+.+
T Consensus 79 ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~ 121 (134)
T 3to5_A 79 IRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAA 121 (134)
T ss_dssp HHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHH
T ss_pred HHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHH
Confidence 9987667899999999999999999999999999999999864
No 2
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.92 E-value=4.3e-24 Score=156.16 Aligned_cols=108 Identities=31% Similarity=0.473 Sum_probs=101.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||||||++..+..++.+|+..||.+..+.++.+|++.+ ....||+||+|+.||+++|+++++.+|+.
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l-----------~~~~~dlvllD~~~p~~~g~~~~~~l~~~ 71 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL-----------SEFTPDLIVLXIMMPVMDGFTVLKKLQEK 71 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------TTBCCSEEEECSCCSSSCHHHHHHHHHTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHH-----------HhcCCCEEEEeccCCCCcHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999998 55679999999999999999999999986
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
...+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 72 ~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~ 110 (122)
T 3gl9_A 72 EEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPS 110 (122)
T ss_dssp TTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHH
T ss_pred ccccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHH
Confidence 556789999999999999999999999999999999864
No 3
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.91 E-value=2.1e-26 Score=170.67 Aligned_cols=104 Identities=21% Similarity=0.228 Sum_probs=92.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
.+++|||||||++.++..++.+|+.+||.|. .|.||.+|++.+ ...+||+||+|++||+|||+++++.
T Consensus 6 ~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~-----------~~~~~DlvllDi~mP~~~G~el~~~ 74 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIA-----------RKGQFDIAIIDVNLDGEPSYPVADI 74 (123)
T ss_dssp CCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHH-----------HHCCSSEEEECSSSSSCCSHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HhCCCCEEEEecCCCCCCHHHHHHH
Confidence 3467999999999999999999999999985 799999999999 4457999999999999999999999
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
||+. ++|||++|++.+... +.++|+++||.|||+.+
T Consensus 75 lr~~----~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~ 110 (123)
T 2lpm_A 75 LAER----NVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDS 110 (123)
T ss_dssp HHHT----CCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHH
T ss_pred HHcC----CCCEEEEecCccHHH---HHhCCCCcEEECCCCHH
Confidence 9973 689999999876543 34679999999999864
No 4
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.90 E-value=1.9e-23 Score=155.47 Aligned_cols=109 Identities=25% Similarity=0.466 Sum_probs=100.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------~~~~dlvl~D~~lp~~~g~~~~~~lr~ 72 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIY-----------KNLPDALICDVLLPGIDGYTLCKRVRQ 72 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HSCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHH-----------hCCCCEEEEeCCCCCCCHHHHHHHHHc
Confidence 468999999999999999999999999999999999999983 457999999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
....+.+|||++|+..+.....+++++|+++||.||++.+
T Consensus 73 ~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~ 112 (136)
T 3t6k_A 73 HPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQ 112 (136)
T ss_dssp SGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHH
T ss_pred CCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHH
Confidence 6445789999999999999999999999999999999854
No 5
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.90 E-value=4.7e-23 Score=164.59 Aligned_cols=119 Identities=24% Similarity=0.419 Sum_probs=99.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCC-EEEEEcCHHHHHHHhhhcCC--CCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSC-KVTAVESGTRALQYLGLDGE--QSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~-~v~~a~~g~eal~~l~~~~~--~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
.+.+||||||++.++..+..+|+..|| .|..+.++.+|++.+..... ..........||+||+|+.||+++|+++++
T Consensus 60 ~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~ 139 (206)
T 3mm4_A 60 RGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATR 139 (206)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHH
Confidence 457999999999999999999999999 89999999999999853200 000000123799999999999999999999
Q ss_pred HHHhcCC--CCCCcEEEEecCC-CHHHHHHHHHcCCCeeeeCCCC
Q 048660 169 KIKESSV--FREVPVVIMSSED-VLTQIDSCLEEGAEEYIVKPVK 210 (213)
Q Consensus 169 ~ir~~~~--~~~~pII~lt~~~-~~~~~~~~~~~G~~~~L~KP~~ 210 (213)
.||+... .+.+|||++|+.. +.....+++++|+++||.||++
T Consensus 140 ~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~ 184 (206)
T 3mm4_A 140 EIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN 184 (206)
T ss_dssp HHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT
T ss_pred HHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH
Confidence 9997421 3789999999998 7788899999999999999987
No 6
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.89 E-value=1.2e-22 Score=149.53 Aligned_cols=110 Identities=32% Similarity=0.587 Sum_probs=99.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCE-EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCK-VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~-v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
.++||||||++..+..++.+|++.||. +..+.++.+|++.+.. ...||+||+|+.||+++|+++++.||
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~----------~~~~dlvi~D~~~p~~~g~~~~~~lr 74 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDA----------NADTKVLITDWNMPEMNGLDLVKKVR 74 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHH----------CTTCCEEEECSCCSSSCHHHHHHHHH
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHh----------CCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 468999999999999999999999995 8899999999998742 23689999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+....+.+|||++|+..+.....+++++|+++||.||++.+
T Consensus 75 ~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~ 115 (129)
T 3h1g_A 75 SDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQ 115 (129)
T ss_dssp TSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHH
T ss_pred hcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHH
Confidence 86556789999999999999999999999999999999864
No 7
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.89 E-value=1.1e-22 Score=150.83 Aligned_cols=113 Identities=24% Similarity=0.411 Sum_probs=97.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC-EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC-KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~-~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
..+||||||++..+..++.+|+..|+ .+..+.++.+|++.+..... ....||+||+|+.||+++|+++++.||
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~------~~~~~dlvllD~~mp~~~G~~~~~~lr 75 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTS------KGENYNMIFMDVQMPKVDGLLSTKMIR 75 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHH------HTCCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHh------cCCCCCEEEEeCCCCCCChHHHHHHHH
Confidence 35899999999999999999999997 58899999999998842100 014699999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+.. .+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 76 ~~~-~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~ 115 (133)
T 2r25_B 76 RDL-GYTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRP 115 (133)
T ss_dssp HHS-CCCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHH
T ss_pred hhc-CCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHH
Confidence 742 3468999999999999999999999999999999754
No 8
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.89 E-value=1.3e-22 Score=147.62 Aligned_cols=105 Identities=24% Similarity=0.468 Sum_probs=97.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||||||++..+..++..|++.||.+..+.++.+|++.+ ....||+||+|+.||+++|+++++.+|+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlii~D~~~p~~~g~~~~~~lr~~ 71 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMV-----------EELQPDLILLDIMLPNKDGVEVCREVRKK 71 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HTTCCSEEEEETTSTTTHHHHHHHHHHTT
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHH-----------hhCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999998 44579999999999999999999999974
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
..+|||++|+..+.....++++.|+++||.||++.+
T Consensus 72 ---~~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~ 107 (120)
T 3f6p_A 72 ---YDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTR 107 (120)
T ss_dssp ---CCSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHH
T ss_pred ---CCCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHH
Confidence 378999999999999999999999999999999854
No 9
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.89 E-value=6.9e-23 Score=160.40 Aligned_cols=107 Identities=18% Similarity=0.318 Sum_probs=100.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+ ....||+||+|+.||+++|+++++.||+
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlvl~D~~lp~~~g~~~~~~l~~ 75 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLA-----------GAEKFEFITVXLHLGNDSGLSLIAPLCD 75 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHH-----------TTSCCSEEEECSEETTEESHHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hhCCCCEEEEeccCCCccHHHHHHHHHh
Confidence 57999999999999999999999999999999999999998 5567999999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+.+|||++|+..+.+...++++.|+++||.||++.+
T Consensus 76 ~--~~~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~ 113 (184)
T 3rqi_A 76 L--QPDARILVLTGYASIATAVQAVKDGADNYLAKPANVE 113 (184)
T ss_dssp H--CTTCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHH
T ss_pred c--CCCCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHH
Confidence 6 5789999999999999999999999999999999854
No 10
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.88 E-value=2.3e-22 Score=150.99 Aligned_cols=110 Identities=30% Similarity=0.562 Sum_probs=96.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
..++||||||++..+..++.+|++.||.+..+.++.+|++.+. ...||+||+|+.||+++|+++++.||
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------~~~~dlvl~D~~mp~~~g~~~~~~lr 81 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMA-----------EEDYDAVIVDLHMPGMNGLDMLKQLR 81 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHH-----------HSCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 4579999999999999999999999999999999999999983 45799999999999999999999999
Q ss_pred hc--CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ES--SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~--~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+. ...+.+|||++|+..+.+...+++++|+++||.||++.+
T Consensus 82 ~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~ 124 (143)
T 3m6m_D 82 VMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAA 124 (143)
T ss_dssp HHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred hchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHH
Confidence 53 224678999999999999999999999999999999854
No 11
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.88 E-value=8.2e-22 Score=149.59 Aligned_cols=110 Identities=28% Similarity=0.498 Sum_probs=101.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
...+||||||++..+..++.+|+..||.|..+.++.+|++.+ ....||+||+|+.||+++|+++++.||
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~dlii~D~~l~~~~g~~~~~~lr 74 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFL-----------SLTRPDLIISDVLMPEMDGYALCRWLK 74 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH-----------TTCCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 357999999999999999999999999999999999999999 556799999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+....+.+|||++|+..+.....+++++|+++||.||++.+
T Consensus 75 ~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~ 115 (154)
T 3gt7_A 75 GQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDV 115 (154)
T ss_dssp HSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHH
T ss_pred hCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHH
Confidence 87555789999999999999999999999999999999753
No 12
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.87 E-value=1.7e-21 Score=142.46 Aligned_cols=107 Identities=23% Similarity=0.413 Sum_probs=99.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..++..|+..||.+..+.++.++++.+ ....||++|+|+.||+++|+++++.+|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvi~D~~l~~~~g~~~~~~l~~ 71 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFA-----------PDVRNGVLVTDLRMPDMSGVELLRNLGD 71 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHG-----------GGCCSEEEEEECCSTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHH-----------hcCCCCEEEEECCCCCCCHHHHHHHHHh
Confidence 46899999999999999999999999999999999999988 4457999999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 72 ~--~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~ 109 (126)
T 1dbw_A 72 L--KINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDT 109 (126)
T ss_dssp T--TCCCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred c--CCCCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHH
Confidence 6 5789999999999999999999999999999999754
No 13
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.87 E-value=1.8e-21 Score=142.85 Aligned_cols=108 Identities=29% Similarity=0.509 Sum_probs=94.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
.+.+||||||++..+..+..+|+..||.+..+.++.+|++.+ ....||+||+|+.||+++|+++++.+|
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~d~~l~~~~g~~~~~~l~ 74 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL-----------GGFTPDLMICDIAMPRMNGLKLLEHIR 74 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHH-----------TTCCCSEEEECCC-----CHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHH-----------hcCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 457999999999999999999999999999999999999998 556799999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCC-CCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV-KLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~-~~~ 212 (213)
+. .+.+|||++|+..+.....++++.|+++||.||+ +.+
T Consensus 75 ~~--~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~ 114 (130)
T 3eod_A 75 NR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLN 114 (130)
T ss_dssp HT--TCCCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---C
T ss_pred hc--CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHH
Confidence 86 5789999999999999999999999999999999 544
No 14
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.87 E-value=7.8e-22 Score=146.80 Aligned_cols=109 Identities=23% Similarity=0.313 Sum_probs=101.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh-cCCEEEEEcCHHHHHHHhhhcCCCCCCCCCC-CceeEEEEeCCCC-CCCHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQI-SSCKVTAVESGTRALQYLGLDGEQSNVGFDA-LKVNLIITDYTMP-GMTGYELLKK 169 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~-~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~-~~~dlil~D~~mp-~~~G~e~~~~ 169 (213)
..+||||||++..+..++.+|+. .||.+..+.++.+|++.+ .. ..||+||+|+.|| +++|+++++.
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l-----------~~~~~~dlvi~D~~l~~~~~g~~~~~~ 72 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIF-----------KDLDSITLIIMDIAFPVEKEGLEVLSA 72 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTT-----------TTCCCCSEEEECSCSSSHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHH-----------hcCCCCcEEEEeCCCCCCCcHHHHHHH
Confidence 57999999999999999999999 999999999999999988 55 6899999999999 9999999999
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
||+....+.+|||++|+..+.+...+++++|+++||.||++.+
T Consensus 73 l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~ 115 (140)
T 3lua_A 73 IRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTK 115 (140)
T ss_dssp HHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTT
T ss_pred HHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHH
Confidence 9984336899999999999999999999999999999999875
No 15
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.87 E-value=7.9e-22 Score=163.06 Aligned_cols=112 Identities=23% Similarity=0.381 Sum_probs=101.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
....+||||||++..+..+...|+..|+.+..+.++.+|++.+.. ...||+||+|+.||++||+++++.|
T Consensus 122 ~~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~----------~~~~dlvllD~~mP~~dG~~l~~~l 191 (259)
T 3luf_A 122 NQQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQ----------HPAIRLVLVDYYMPEIDGISLVRML 191 (259)
T ss_dssp HTTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHH----------CTTEEEEEECSCCSSSCHHHHHHHH
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhc----------CCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 356799999999999999999999999999999999999999842 2248999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
|+......+|||++|+..+.....+++++|+++||.||++.+
T Consensus 192 r~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~ 233 (259)
T 3luf_A 192 RERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPE 233 (259)
T ss_dssp HHHCCTTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHH
T ss_pred HhccCCCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHH
Confidence 987655689999999999999999999999999999999864
No 16
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.87 E-value=2.7e-21 Score=141.41 Aligned_cols=109 Identities=34% Similarity=0.555 Sum_probs=99.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC-EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC-KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~-~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
..+||||||++..+..++.+|+..|| .+..+.++.+|++.+ ....||++|+|+.||+++|+++++.+|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~-----------~~~~~dlvi~D~~l~~~~g~~l~~~l~ 72 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGGYGFVISDWNMPNMDGLELLKTIR 72 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHH-----------TTCCCCEEEEESCCSSSCHHHHHHHHH
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 46899999999999999999999999 799999999999998 445799999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+....+.+|||++|+..+.....++++.|+++|+.||++.+
T Consensus 73 ~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~ 113 (128)
T 1jbe_A 73 AXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAA 113 (128)
T ss_dssp C--CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred hhcccCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHH
Confidence 85446789999999999999999999999999999999754
No 17
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.87 E-value=2.1e-21 Score=146.50 Aligned_cols=118 Identities=32% Similarity=0.552 Sum_probs=101.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
.++||||||++..+..++.+|+..|+ .+..+.++.+|++.++..... .......||+||+|+.||+++|+++++.|
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~--~~~~~~~~dliilD~~l~~~~g~~~~~~l 81 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKS--GRVSAGRAQLVLLDLNLPDMTGIDILKLV 81 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSS--SGGGTTCBEEEEECSBCSSSBHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccc--cccccCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 57999999999999999999999998 899999999999998521100 00023579999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
|+....+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 82 r~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~ 123 (152)
T 3heb_A 82 KENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYE 123 (152)
T ss_dssp HHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHH
T ss_pred HhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHH
Confidence 985557899999999999999999999999999999999854
No 18
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.87 E-value=1.9e-21 Score=143.59 Aligned_cols=107 Identities=23% Similarity=0.318 Sum_probs=98.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..++.+|+..||.+..+.++.+|++.+. ...||+||+|+.||+++|+++++.+++
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------~~~~dlvl~D~~l~~~~g~~~~~~l~~ 71 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIE-----------NEFFNLALFXIKLPDMEGTELLEKAHK 71 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HSCCSEEEECSBCSSSBHHHHHHHHHH
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHh-----------cCCCCEEEEecCCCCCchHHHHHHHHh
Confidence 358999999999999999999999999999999999999984 347999999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+.+|+|++|+..+.....+++++|+++||.||++.+
T Consensus 72 ~--~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~ 109 (132)
T 3crn_A 72 L--RPGMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPR 109 (132)
T ss_dssp H--CTTSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred h--CCCCcEEEEeccccHHHHHHHHhccchhhccCCCCHH
Confidence 6 4689999999999999999999999999999999754
No 19
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.87 E-value=1.8e-21 Score=141.71 Aligned_cols=106 Identities=27% Similarity=0.417 Sum_probs=98.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||||||++..+..++..|+..||.+..+.++.+|++.+. ...||++|+|+.||+++|+++++.+|+.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-----------~~~~dlvl~D~~l~~~~g~~~~~~l~~~ 72 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVT-----------KERPDLVLLDMKIPGMDGIEILKRMKVI 72 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-----------HHCCSEEEEESCCTTCCHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh-----------ccCCCEEEEecCCCCCCHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999884 3469999999999999999999999986
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 73 --~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~ 109 (124)
T 1srr_A 73 --DENIRVIIMTAYGELDMIQESKELGALTHFAKPFDID 109 (124)
T ss_dssp --CTTCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHH
T ss_pred --CCCCCEEEEEccCchHHHHHHHhcChHhhccCCCCHH
Confidence 5789999999999999999999999999999999754
No 20
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.87 E-value=4.1e-21 Score=144.80 Aligned_cols=116 Identities=26% Similarity=0.447 Sum_probs=99.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
..+||||||++..+..++.+|+..|+ .+..+.++.+|++.+..... ......||+||+|+.||+++|+++++.|
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~----~~~~~~~dlillD~~lp~~~g~~l~~~l 83 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGE----YENSPRPNLILLDLNLPKKDGREVLAEI 83 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGG----GTTCCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccc----cccCCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 46899999999999999999998887 88999999999999842100 0002469999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
|+....+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 84 ~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~ 125 (149)
T 1i3c_A 84 KQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLK 125 (149)
T ss_dssp HHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHH
T ss_pred HhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHH
Confidence 986444789999999999999999999999999999999754
No 21
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.87 E-value=6.8e-23 Score=172.14 Aligned_cols=105 Identities=22% Similarity=0.279 Sum_probs=95.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC-CCCHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP-GMTGYELLKK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp-~~~G~e~~~~ 169 (213)
...+||||||++.++..++.+|+..||.|. .+.||.+|++.+. ...|||||+|+.|| +|||+++++.
T Consensus 159 l~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~-----------~~~~dlvl~D~~MPd~mdG~e~~~~ 227 (286)
T 3n0r_A 159 LATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVT-----------RRTPGLVLADIQLADGSSGIDAVKD 227 (286)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-----------HCCCSEEEEESCCTTSCCTTTTTHH
T ss_pred CCCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHH-----------hCCCCEEEEcCCCCCCCCHHHHHHH
Confidence 346899999999999999999999999999 9999999999994 45799999999999 8999999999
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
||+.. ++|||++|+.. +...+++++|+++||.|||+.+
T Consensus 228 ir~~~---~~piI~lT~~~--~~~~~~~~~G~~~~l~KP~~~~ 265 (286)
T 3n0r_A 228 ILGRM---DVPVIFITAFP--ERLLTGERPEPTFLITKPFQPE 265 (286)
T ss_dssp HHHHT---TCCEEEEESCG--GGGCCSSSCCCSSEEESSCCHH
T ss_pred HHhcC---CCCEEEEeCCH--HHHHHHHhCCCcEEEeCCCCHH
Confidence 99973 89999999985 4567789999999999999864
No 22
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.86 E-value=2.8e-21 Score=139.75 Aligned_cols=106 Identities=22% Similarity=0.429 Sum_probs=98.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
++||||||++..+..+...|+..||.+..+.++.+|++.+. ...||++|+|+.||+++|+++++.+++.
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~-----------~~~~dlil~D~~l~~~~g~~~~~~l~~~ 69 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLN-----------EHIPDIAIVDLGLPDEDGLSLIRRWRSN 69 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HSCCSEEEECSCCSSSCHHHHHHHHHHT
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHh-----------ccCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 37999999999999999999999999999999999999983 3479999999999999999999999976
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|+|++|+..+.....++++.|+++|+.||++.+
T Consensus 70 --~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~ 106 (121)
T 2pl1_A 70 --DVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIE 106 (121)
T ss_dssp --TCCSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred --CCCCCEEEEecCCCHHHHHHHHHcCccceEECCCCHH
Confidence 5689999999999999999999999999999999754
No 23
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.86 E-value=1e-21 Score=145.73 Aligned_cols=107 Identities=17% Similarity=0.213 Sum_probs=99.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC--CCHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG--MTGYELLKKI 170 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~--~~G~e~~~~i 170 (213)
..+||||||++..+..++.+|+..||.+..+.++.+|++.+ ....||+||+|+.||+ ++|+++++.|
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~D~~l~~~~~~g~~~~~~l 74 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQ-----------ISDDAIGMIIEAHLEDKKDSGIELLETL 74 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSC-----------CCTTEEEEEEETTGGGBTTHHHHHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHH-----------hccCCCEEEEeCcCCCCCccHHHHHHHH
Confidence 46999999999999999999999999999999999999987 5567999999999999 9999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
|+. .+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 75 ~~~--~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~ 114 (136)
T 3kto_A 75 VKR--GFHLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEH 114 (136)
T ss_dssp HHT--TCCCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHH
T ss_pred HhC--CCCCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHH
Confidence 987 5789999999999999999999999999999999754
No 24
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.86 E-value=1.3e-21 Score=142.21 Aligned_cols=108 Identities=29% Similarity=0.441 Sum_probs=93.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||||||++..+..++.+|+..||.+..+.++.+|++.+. ...||++|+|+.||+++|+++++.||+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~-----------~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 70 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAR-----------ENKPDLILMDIQLPEISGLEVTKWLKED 70 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-----------HHCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 47999999999999999999999999999999999999884 3469999999999999999999999986
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
...+.+|||++|+..+......+++.|+++||.||++.+
T Consensus 71 ~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~ 109 (124)
T 1mb3_A 71 DDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVV 109 (124)
T ss_dssp TTTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHH
T ss_pred ccccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHH
Confidence 445789999999998888889999999999999999754
No 25
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.86 E-value=9.2e-22 Score=143.88 Aligned_cols=108 Identities=20% Similarity=0.274 Sum_probs=98.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..++.+|++.||.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlii~D~~l~~~~g~~~~~~l~~ 71 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMS-----------TRGYDAVFIDLNLPDTSGLALVKQLRA 71 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHH-----------HSCCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 468999999999999999999999999999999999999984 457999999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
....+.+|||++|+..+... ..++..|+++||.||++.+
T Consensus 72 ~~~~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~ 110 (127)
T 3i42_A 72 LPMEKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDIA 110 (127)
T ss_dssp SCCSSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCHH
T ss_pred hhccCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCHH
Confidence 75567899999999988887 8899999999999999864
No 26
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.86 E-value=1.7e-21 Score=142.60 Aligned_cols=109 Identities=24% Similarity=0.460 Sum_probs=99.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC-EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC-KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~-~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
..+||||||++..+..++.+|+..|| .+..+.++.+|++.+ ....||+||+|+.||+++|+++++.+|
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~-----------~~~~~dlvl~D~~l~~~~g~~~~~~l~ 74 (129)
T 1p6q_A 6 KIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIM-----------AQNPHHLVISDFNMPKMDGLGLLQAVR 74 (129)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHH-----------HTSCCSEEEECSSSCSSCHHHHHHHHT
T ss_pred cCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHH-----------HcCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 46899999999999999999999999 889999999999998 345799999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+....+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 75 ~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~ 115 (129)
T 1p6q_A 75 ANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIE 115 (129)
T ss_dssp TCTTSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHH
T ss_pred cCccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHH
Confidence 86445789999999999999999999999999999999854
No 27
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.86 E-value=3.2e-21 Score=145.88 Aligned_cols=109 Identities=25% Similarity=0.408 Sum_probs=101.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
....+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.|
T Consensus 12 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlvi~D~~l~~~~g~~~~~~l 80 (153)
T 3hv2_A 12 TRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLA-----------SREVDLVISAAHLPQMDGPTLLARI 80 (153)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHH-----------HSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred cCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHH-----------cCCCCEEEEeCCCCcCcHHHHHHHH
Confidence 45679999999999999999999999999999999999999984 4579999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcC-CCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEG-AEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G-~~~~L~KP~~~~ 212 (213)
|+. .+.+|||++|+..+.....++++.| +++||.||++.+
T Consensus 81 ~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~ 121 (153)
T 3hv2_A 81 HQQ--YPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQ 121 (153)
T ss_dssp HHH--CTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHH
T ss_pred HhH--CCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHH
Confidence 986 5789999999999999999999999 999999999754
No 28
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.86 E-value=5e-21 Score=141.56 Aligned_cols=110 Identities=24% Similarity=0.425 Sum_probs=99.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
...+||||||++..+..++.+|+..||.+..+.++.+|+..+.. ...||+||+|+.||+++|+++++.||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~----------~~~~dlvi~D~~l~~~~g~~~~~~l~ 75 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHY----------QKRIGLMITDLRMQPESGLDLIRTIR 75 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHH----------CTTEEEEEECSCCSSSCHHHHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHh----------CCCCcEEEEeccCCCCCHHHHHHHHH
Confidence 35799999999999999999999999999999999999998842 22499999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+.. .+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 76 ~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~ 115 (136)
T 3hdv_A 76 ASE-RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLG 115 (136)
T ss_dssp TST-TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred hcC-CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHH
Confidence 864 5789999999999999999999999999999999754
No 29
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.86 E-value=2.2e-21 Score=158.73 Aligned_cols=108 Identities=27% Similarity=0.463 Sum_probs=100.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
...+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||
T Consensus 22 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------~~~~dlvllD~~lp~~~g~~~~~~lr 90 (250)
T 3r0j_A 22 PEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAR-----------ETRPDAVILDVXMPGMDGFGVLRRLR 90 (250)
T ss_dssp SSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-----------hCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 4579999999999999999999999999999999999999984 34799999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+. .+.+|||++|+..+.....+++++|+++||.||++.+
T Consensus 91 ~~--~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~ 129 (250)
T 3r0j_A 91 AD--GIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLE 129 (250)
T ss_dssp HT--TCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHH
T ss_pred hc--CCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHH
Confidence 86 5689999999999999999999999999999999864
No 30
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.86 E-value=4.3e-21 Score=143.04 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=102.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
.+..+||||||++..+..+..+|+..|+ .+..+.++.+|++.+..... ....||+||+|+.||+++|+++++
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~------~~~~~dlvi~D~~l~~~~g~~~~~ 80 (146)
T 3ilh_A 7 RKIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYA------AGRWPSIICIDINMPGINGWELID 80 (146)
T ss_dssp CCEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHT------SSCCCSEEEEESSCSSSCHHHHHH
T ss_pred CccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhc------cCCCCCEEEEcCCCCCCCHHHHHH
Confidence 3567999999999999999999999999 89999999999999853111 125799999999999999999999
Q ss_pred HHHhcC--CCCCCcEEEEecCCCHHHHHHHHHcC-CCeeeeCCCCCC
Q 048660 169 KIKESS--VFREVPVVIMSSEDVLTQIDSCLEEG-AEEYIVKPVKLS 212 (213)
Q Consensus 169 ~ir~~~--~~~~~pII~lt~~~~~~~~~~~~~~G-~~~~L~KP~~~~ 212 (213)
.||+.. ..+.+|||++|+..+.....+++..| +++||.||++.+
T Consensus 81 ~l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~ 127 (146)
T 3ilh_A 81 LFKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTAN 127 (146)
T ss_dssp HHHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHH
T ss_pred HHHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHH
Confidence 999842 36789999999999999999999999 999999999854
No 31
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.86 E-value=3.3e-21 Score=139.41 Aligned_cols=106 Identities=25% Similarity=0.420 Sum_probs=97.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCE-EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCK-VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~-v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
.+||||||++..+..++..|+..||. +..+.++.+|++.+. ...||+||+|+.||+++|+++++.+|+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~-----------~~~~dlil~D~~l~~~~g~~~~~~l~~ 71 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYK-----------ELKPDIVTMDITMPEMNGIDAIKEIMK 71 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-----------HHCCSEEEEECSCGGGCHHHHHHHHHH
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHH-----------hcCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 58999999999999999999999999 568999999999984 346999999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+.+|+|++|+..+.....++++.|+++||.||++.+
T Consensus 72 ~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~ 109 (120)
T 1tmy_A 72 I--DPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPS 109 (120)
T ss_dssp H--CTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHH
T ss_pred h--CCCCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHH
Confidence 6 4689999999999999999999999999999999754
No 32
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.86 E-value=5.9e-21 Score=142.63 Aligned_cols=109 Identities=26% Similarity=0.459 Sum_probs=100.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCE--EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCK--VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~--v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
...+||||||++..+..+..+|+..|+. +..+.++.+|++.+ ....||+||+|+.||+++|+++++.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l-----------~~~~~dlii~D~~l~~~~g~~~~~~ 72 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQV-----------QQAKYDLIILDIGLPIANGFEVMSA 72 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHH-----------TTCCCSEEEECTTCGGGCHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHh-----------hcCCCCEEEEeCCCCCCCHHHHHHH
Confidence 3579999999999999999999999987 88999999999999 5567999999999999999999999
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCC-CC
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV-KL 211 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~-~~ 211 (213)
||+....+.+|||++|+..+.....+++++|+++||.||+ +.
T Consensus 73 lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~ 115 (144)
T 3kht_A 73 VRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNV 115 (144)
T ss_dssp HHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSH
T ss_pred HHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcH
Confidence 9985447899999999999999999999999999999999 64
No 33
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.85 E-value=9.7e-21 Score=142.72 Aligned_cols=109 Identities=25% Similarity=0.405 Sum_probs=100.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcC--CEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISS--CKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g--~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
...++||||||++..+..+..+|+..| +.+..+.++.+|++.+ ....||+||+|+.||+++|+++++
T Consensus 18 ~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l-----------~~~~~dlii~D~~l~~~~g~~~~~ 86 (150)
T 4e7p_A 18 GSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLL-----------EKESVDIAILDVEMPVKTGLEVLE 86 (150)
T ss_dssp --CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHH-----------TTSCCSEEEECSSCSSSCHHHHHH
T ss_pred CCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHh-----------hccCCCEEEEeCCCCCCcHHHHHH
Confidence 346799999999999999999999887 7899999999999998 556799999999999999999999
Q ss_pred HHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 169 KIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.||+. .+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 87 ~l~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~ 128 (150)
T 4e7p_A 87 WIRSE--KLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIA 128 (150)
T ss_dssp HHHHT--TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHH
T ss_pred HHHHh--CCCCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHH
Confidence 99986 5789999999999999999999999999999999754
No 34
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.85 E-value=1e-20 Score=139.62 Aligned_cols=116 Identities=29% Similarity=0.471 Sum_probs=100.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
+.+||||||++..+..+...|+..|+ .+..+.++.+|++.+......+ ....||+||+|+.||+++|+++++.|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~----~~~~~dlvi~d~~~~~~~g~~~~~~l 77 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYA----NASRPDLILLXLNLPKKDGREVLAEI 77 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGG----SCCCCSEEEECSSCSSSCHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccc----cCCCCcEEEEecCCCcccHHHHHHHH
Confidence 46899999999999999999999998 9999999999999984210000 01579999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
|+....+.+|||++|+..+.+...++++.|+++||.||++.+
T Consensus 78 ~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~ 119 (140)
T 1k68_A 78 KSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLS 119 (140)
T ss_dssp HHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHH
T ss_pred HcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHH
Confidence 986434789999999999999999999999999999999754
No 35
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.85 E-value=9e-21 Score=137.65 Aligned_cols=106 Identities=27% Similarity=0.486 Sum_probs=97.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..++..|+..||.+..+.++.+|++.+. ...||++|+|+.||+++|+++++.+|+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-----------~~~~dlvi~D~~l~~~~g~~~~~~l~~ 71 (123)
T 1xhf_A 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS-----------EYDINLVIMDINLPGKNGLLLARELRE 71 (123)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-----------HSCCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHh-----------cCCCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 358999999999999999999999999999999999999983 347999999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. +.+|+|++|+..+.....+++++|+++||.||++.+
T Consensus 72 ~---~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~ 108 (123)
T 1xhf_A 72 Q---ANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPR 108 (123)
T ss_dssp H---CCCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHH
T ss_pred C---CCCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHH
Confidence 5 478999999999999999999999999999999854
No 36
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.85 E-value=1.2e-21 Score=145.51 Aligned_cols=110 Identities=16% Similarity=0.312 Sum_probs=99.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
...+||||||++..+..++.+|++.||.+..+.++.+|++.+. ...||+||+|+.||+++|+++++.||
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlvi~d~~l~~~~g~~~~~~l~ 73 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVA-----------RRPYAAMTVDLNLPDQDGVSLIRALR 73 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH-----------HSCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHH-----------hCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 3579999999999999999999999999999999999999984 45799999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHH-HHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQID-SCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~-~~~~~G~~~~L~KP~~~~ 212 (213)
+....+.+|||++|+..+..... .+++.|+++||.||++.+
T Consensus 74 ~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~ 115 (140)
T 3grc_A 74 RDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDEN 115 (140)
T ss_dssp TSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHH
T ss_pred hCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHH
Confidence 84446899999999988777766 889999999999999754
No 37
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.85 E-value=1.3e-20 Score=140.45 Aligned_cols=109 Identities=28% Similarity=0.448 Sum_probs=100.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..++.+|+..||.+..+.++.+|++.+.. ....||+||+|+.||+++|+++++.||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~---------~~~~~dlvi~d~~l~~~~g~~~~~~l~~ 73 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTE---------NCNSIDVVITDMKMPKLSGMDILREIKK 73 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH---------TTTTCCEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHh---------CCCCCCEEEEeCCCCCCcHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999842 1457999999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 74 ~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~ 111 (143)
T 3jte_A 74 I--TPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQ 111 (143)
T ss_dssp H--CTTCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred h--CCCCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHH
Confidence 7 5789999999999999999999999999999998754
No 38
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.85 E-value=1.2e-20 Score=136.82 Aligned_cols=105 Identities=23% Similarity=0.406 Sum_probs=97.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||||||++..+..+...|+..||.+..+.++.++++.+. ...||++|+|+.||+++|+++++.+|+
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvi~d~~l~~~~g~~~~~~l~~- 70 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQ-----------NQSVDLILLDINLPDENGLMLTRALRE- 70 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HSCCSEEEEESCCSSSCHHHHHHHHHT-
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHh-----------cCCCCEEEEeCCCCCCChHHHHHHHHh-
Confidence 48999999999999999999999999999999999999883 346999999999999999999999997
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|+|++|+..+.....++++.|+++|+.||++.+
T Consensus 71 --~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~ 107 (122)
T 1zgz_A 71 --RSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELR 107 (122)
T ss_dssp --TCCCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHH
T ss_pred --cCCCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHH
Confidence 3579999999999999999999999999999999754
No 39
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.85 E-value=3.6e-21 Score=142.51 Aligned_cols=108 Identities=23% Similarity=0.363 Sum_probs=99.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
..++||||||++..+..+..+|+..|+.+..+.++.+|++.++ ...||+||+|+.||+++|+++++.||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~-----------~~~~dlvi~d~~l~~~~g~~~~~~l~ 74 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFG-----------LHAPDVIITDIRMPKLGGLEMLDRIK 74 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHH-----------HHCCSEEEECSSCSSSCHHHHHHHHH
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHh-----------ccCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 3579999999999999999999999999999999999999984 34799999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+. .+.+|||++|+..+.+...+++++|+++||.||++.+
T Consensus 75 ~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~ 113 (137)
T 3hdg_A 75 AG--GAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPG 113 (137)
T ss_dssp HT--TCCCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHH
T ss_pred hc--CCCCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHH
Confidence 87 5789999999999999999999999999999999754
No 40
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.85 E-value=1.4e-20 Score=138.16 Aligned_cols=108 Identities=20% Similarity=0.367 Sum_probs=97.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-CCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQIS-SCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
.+||||||++..+..++.+|+.. |+.+. .+.++.+|++.+. ...||+||+|+.||+++|+++++.||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~-----------~~~~dlvllD~~l~~~~g~~~~~~l~ 71 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLE-----------EKRPDILLLDIIMPHLDGLAVLERIR 71 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-----------HHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh-----------cCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 58999999999999999999987 88865 7999999999984 34689999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLSD 213 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~e 213 (213)
+.. .+..|||++|+..+.....++++.|+++||.||++.++
T Consensus 72 ~~~-~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~ 112 (130)
T 1dz3_A 72 AGF-EHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMEN 112 (130)
T ss_dssp HHC-SSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTT
T ss_pred hcC-CCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHH
Confidence 842 35789999999999999999999999999999998764
No 41
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.85 E-value=5.2e-22 Score=147.02 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=100.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcC-CEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISS-CKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g-~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
...+||||||++..+..++.+|+..| |.+..+.++.+|++.+ ....||+||+|+.||+++|+++++.|
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l-----------~~~~~dlvi~D~~l~~~~g~~~~~~l 81 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPP-----------ADTRPGIVILDLGGGDLLGKPGIVEA 81 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCC-----------TTCCCSEEEEEEETTGGGGSTTHHHH
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHH-----------hccCCCEEEEeCCCCCchHHHHHHHH
Confidence 45799999999999999999999999 9999999999999887 55679999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
|+. .+.+|||++|+..+.+...++++.|+++||.||++.+
T Consensus 82 ~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~ 121 (135)
T 3snk_A 82 RAL--WATVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGK 121 (135)
T ss_dssp HGG--GTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred Hhh--CCCCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHH
Confidence 987 4589999999999999999999999999999999854
No 42
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.85 E-value=6.4e-21 Score=140.90 Aligned_cols=106 Identities=20% Similarity=0.421 Sum_probs=96.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC--CEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISS--CKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g--~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
.+|||+||++..+..++.+|+..| +.+..+.++.+|++.+. ...||+||+|+.||+++|+++++.||
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~-----------~~~~dlvilD~~lp~~~g~~~~~~l~ 72 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIE-----------EYNPNVVILDIEMPGMTGLEVLAEIR 72 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHH-----------HHCCSEEEECSSCSSSCHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHh-----------hcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 589999999999999999999887 56788999999999884 34689999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+. .+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 73 ~~--~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~ 111 (133)
T 3b2n_A 73 KK--HLNIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIE 111 (133)
T ss_dssp HT--TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHH
T ss_pred HH--CCCCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHH
Confidence 85 5789999999999999999999999999999999754
No 43
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.85 E-value=5.6e-21 Score=142.24 Aligned_cols=106 Identities=26% Similarity=0.421 Sum_probs=98.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+.
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlvllD~~l~~~~g~~l~~~l~~~ 73 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIE-----------RSKPQLIILDLKLPDMSGEDVLDWINQN 73 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHH-----------HHCCSEEEECSBCSSSBHHHHHHHHHHT
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHH-----------hcCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 48999999999999999999999999999999999999984 3469999999999999999999999986
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 74 --~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~ 110 (137)
T 3cfy_A 74 --DIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINAD 110 (137)
T ss_dssp --TCCCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred --CCCCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHH
Confidence 5789999999999999999999999999999999754
No 44
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.85 E-value=2.3e-21 Score=159.69 Aligned_cols=109 Identities=27% Similarity=0.546 Sum_probs=100.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
....+||||||++.++..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.|
T Consensus 127 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-----------~~~~dlvl~D~~mp~~~G~~l~~~i 195 (254)
T 2ayx_A 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLS-----------KNHIDIVLSDVNMPNMDGYRLTQRI 195 (254)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHH-----------HSCCSEEEEEESSCSSCCHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-----------hCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 45679999999999999999999999999999999999999984 3469999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
|+. .+.+|||++|+....+...+++++|+++||.||++.+
T Consensus 196 r~~--~~~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~ 235 (254)
T 2ayx_A 196 RQL--GLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLD 235 (254)
T ss_dssp HHH--HCCSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHH
T ss_pred Hhc--CCCCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHH
Confidence 987 4589999999999999999999999999999999754
No 45
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.85 E-value=1e-20 Score=143.89 Aligned_cols=110 Identities=25% Similarity=0.390 Sum_probs=100.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
...+||||||++..+..++.+|++.||.+. .+.++.+|++.+... ...||+||+|+.||+++|+++++.|
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~---------~~~~dliilD~~l~~~~g~~~~~~l 105 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNH---------YPNIDIVTLXITMPKMDGITCLSNI 105 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---------GGGCCEEEECSSCSSSCHHHHHHHH
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc---------CCCCCEEEEeccCCCccHHHHHHHH
Confidence 457999999999999999999999999988 999999999998431 1168999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
|+. .+.+|||++|+..+.....+++++|+++||.||++.+
T Consensus 106 r~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~ 145 (157)
T 3hzh_A 106 MEF--DKNARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRA 145 (157)
T ss_dssp HHH--CTTCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred Hhh--CCCCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHH
Confidence 987 5789999999999999999999999999999999753
No 46
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.84 E-value=3.2e-21 Score=142.07 Aligned_cols=106 Identities=22% Similarity=0.405 Sum_probs=95.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
++||||||++..+..++.+|++.||.+. .+.++.+|++.+. ...||+||+|+.||+++|+++++.||+
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~-----------~~~~dlii~d~~l~~~~g~~~~~~l~~ 70 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVE-----------TLKPDIVIIDVDIPGVNGIQVLETLRK 70 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHH-----------HHCCSEEEEETTCSSSCHHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHH-----------hcCCCEEEEecCCCCCChHHHHHHHHh
Confidence 6899999999999999999999999987 8999999999984 447999999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 71 ~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~ 108 (134)
T 3f6c_A 71 R--QYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMN 108 (134)
T ss_dssp T--TCCSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTH
T ss_pred c--CCCCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHH
Confidence 6 5789999999999988999999999999999999864
No 47
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.84 E-value=5.9e-21 Score=140.45 Aligned_cols=107 Identities=28% Similarity=0.451 Sum_probs=93.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..++.+|+ .||.+..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~-----------~~~~dlvi~d~~l~~~~g~~~~~~l~~ 71 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQAL-----------AHPPDVLISDVNMDGMDGYALCGHFRS 71 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHH-----------HSCCSEEEECSSCSSSCHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 4699999999999999999999 8999999999999999984 457999999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
....+.+|||++|+..+... ..+++.|+++||.||++.+
T Consensus 72 ~~~~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~ 110 (133)
T 3nhm_A 72 EPTLKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPP 110 (133)
T ss_dssp STTTTTCCEEEEESCCC------TTSCCCSEEEESSCCHH
T ss_pred CCccCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHH
Confidence 75567899999999987777 8899999999999999854
No 48
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.84 E-value=8.9e-21 Score=140.94 Aligned_cols=106 Identities=21% Similarity=0.354 Sum_probs=97.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------~~~~dlvllD~~l~~~~g~~l~~~l~~ 72 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIF-----------SNKYDLIFLEIILSDGDGWTLCKKIRN 72 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-----------HCCCSEEEEESEETTEEHHHHHHHHHT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCHHHHHHHHcc
Confidence 468999999999999999999999999999999999999983 347999999999999999999999997
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. . .+|||++|+..+.....++++.|+++||.||++.+
T Consensus 73 ~--~-~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~ 109 (136)
T 2qzj_A 73 V--T-TCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLE 109 (136)
T ss_dssp T--C-CCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHH
T ss_pred C--C-CCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHH
Confidence 5 2 78999999999999999999999999999999754
No 49
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.84 E-value=6.5e-21 Score=151.16 Aligned_cols=107 Identities=22% Similarity=0.391 Sum_probs=99.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+ ....||+||+|+.||+++|+++++.||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlvl~D~~lp~~~g~~~~~~l~~ 72 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHR-----------RPEQHGCLVLDMRMPGMSGIELQEQLTA 72 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHC-----------CTTSCEEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhh-----------hccCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 46899999999999999999999999999999999999988 5567999999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 73 ~--~~~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~ 110 (208)
T 1yio_A 73 I--SDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQ 110 (208)
T ss_dssp T--TCCCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHH
T ss_pred c--CCCCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHH
Confidence 6 5789999999999888899999999999999999754
No 50
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.84 E-value=1.5e-20 Score=138.17 Aligned_cols=109 Identities=23% Similarity=0.439 Sum_probs=94.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
...+||||||++..+..++.+|++.||.+..+.++.+|++.+ ....||+||+|+.||+++|+++++.||
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlii~d~~l~~~~g~~~~~~l~ 73 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKL-----------STFEPAIMTLDLSMPKLDGLDVIRSLR 73 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHTCCSEEEEESCBTTBCHHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHH-----------HhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 357999999999999999999999999999999999999998 345799999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+....+..+||++++.... ...+++++|+++||.||++.+
T Consensus 74 ~~~~~~~~~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~ 113 (132)
T 3lte_A 74 QNKVANQPKILVVSGLDKA-KLQQAVTEGADDYLEKPFDND 113 (132)
T ss_dssp TTTCSSCCEEEEECCSCSH-HHHHHHHHTCCEEECSSCCHH
T ss_pred hcCccCCCeEEEEeCCChH-HHHHHHHhChHHHhhCCCCHH
Confidence 8643356667766666555 788999999999999999854
No 51
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.84 E-value=1e-20 Score=140.64 Aligned_cols=108 Identities=26% Similarity=0.418 Sum_probs=95.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+.
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-----------~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 72 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALN-----------ATPPDLVLLDIMMEPMDGWETLERIKTD 72 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HSCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHh-----------ccCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 58999999999999999999999999999999999999984 3469999999999999999999999986
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
...+.+|||++|+.........+..+|+++||.||++.+
T Consensus 73 ~~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~ 111 (138)
T 3c3m_A 73 PATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHH 111 (138)
T ss_dssp TTTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHH
T ss_pred cccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHH
Confidence 445689999999987666666666777899999998753
No 52
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.84 E-value=1.8e-20 Score=135.19 Aligned_cols=105 Identities=28% Similarity=0.429 Sum_probs=96.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||||||++..+..++..|+..||.+..+.++.+|++.+. ...||++|+|+.||+++|+++++.+|+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-----------~~~~dlvl~D~~l~~~~g~~~~~~l~~~ 70 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFE-----------AEQPDIIILDLMLPEIDGLEVAKTIRKT 70 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HHCCSEEEECSSCSSSCHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHH-----------hCCCCEEEEeccCCCCCHHHHHHHHHhC
Confidence 37999999999999999999999999999999999999884 3469999999999999999999999974
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+.+|+|++|+..+......+++.|+++||.||++.+
T Consensus 71 ---~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~ 106 (120)
T 2a9o_A 71 ---SSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNR 106 (120)
T ss_dssp ---CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHH
T ss_pred ---CCCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHH
Confidence 578999999999998899999999999999999754
No 53
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.84 E-value=2.6e-21 Score=167.86 Aligned_cols=105 Identities=21% Similarity=0.310 Sum_probs=98.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcC
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESS 174 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~ 174 (213)
+||||||++.++..++.+|+..||.|..+.++.+|++.+. ...||+||+|+.||+|||+++++.||+.
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-----------~~~~DlvllDi~mP~~dG~ell~~lr~~- 69 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIK-----------ELFFPVIVLDVWMPDGDGVNFIDFIKEN- 69 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HBCCSEEEEESEETTEETTTHHHHHHHH-
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-----------hCCCCEEEEeCCCCCCCHHHHHHHHHhh-
Confidence 7999999999999999999999999999999999999984 4579999999999999999999999987
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 175 VFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 175 ~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|||++|++.+.+...++++.|+++||.||++.+
T Consensus 70 -~~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~ 106 (368)
T 3dzd_A 70 -SPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVE 106 (368)
T ss_dssp -CTTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHH
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHH
Confidence 5789999999999999999999999999999999854
No 54
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.84 E-value=2.5e-20 Score=138.35 Aligned_cols=110 Identities=18% Similarity=0.327 Sum_probs=99.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhh-cCCE-EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQI-SSCK-VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~-~g~~-v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
...+||||||++..+..++.+|+. .||. +..+.++.+|++.+. ...||+||+|+.||+++|+++++.
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-----------~~~~dlii~d~~l~~~~g~~~~~~ 75 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLH-----------TVKPDVVMLDLMMVGMDGFSICHR 75 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHH-----------HTCCSEEEEETTCTTSCHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHH-----------hcCCCEEEEecccCCCcHHHHHHH
Confidence 457999999999999999999999 8999 999999999999984 446999999999999999999999
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
||+....+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 76 l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~ 118 (143)
T 3cnb_A 76 IKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFT 118 (143)
T ss_dssp HHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHH
T ss_pred HHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHH
Confidence 9985446889999999999999999999999999999999754
No 55
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.84 E-value=2.7e-21 Score=141.05 Aligned_cols=108 Identities=24% Similarity=0.408 Sum_probs=99.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||||||++..+..+...|+..||.+..+.++.+|++.+ ....||++|+|+.||+++|+++++.+|+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~-----------~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 71 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-----------NEPWPDLILLAWMLPGGSGIQFIKHLRRE 71 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTC-----------SSSCCSEEEEESEETTEEHHHHHHHHHTS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHH-----------hccCCCEEEEecCCCCCCHHHHHHHHHhC
Confidence 5899999999999999999999999999999999999887 45579999999999999999999999986
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
...+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 72 ~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~ 110 (127)
T 2jba_A 72 SMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPK 110 (127)
T ss_dssp TTTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHH
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHH
Confidence 444789999999999888889999999999999999754
No 56
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.84 E-value=1.7e-20 Score=140.08 Aligned_cols=118 Identities=31% Similarity=0.533 Sum_probs=101.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHhhhcCCCCCCCCCC--CceeEEEEeCCCCCCCHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFDA--LKVNLIITDYTMPGMTGYELL 167 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~~a~~g~eal~~l~~~~~~~~~~~~~--~~~dlil~D~~mp~~~G~e~~ 167 (213)
...+||||||++..+..++.+|+..|+ .+..+.++.+|++.+......+. .. ..||+||+|+.||+++|++++
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~---~~~~~~~dlvi~D~~l~~~~g~~~~ 81 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCN---PDIAPRPAVILLDLNLPGTDGREVL 81 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSC---GGGCCCCSEEEECSCCSSSCHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccC---cccCCCCcEEEEECCCCCCCHHHHH
Confidence 457899999999999999999999998 89999999999999853211000 01 579999999999999999999
Q ss_pred HHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 168 KKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 168 ~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+.||+....+.+|||++|+..+......+++.|+++||.||++.+
T Consensus 82 ~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~ 126 (149)
T 1k66_A 82 QEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEID 126 (149)
T ss_dssp HHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHH
T ss_pred HHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHH
Confidence 999986433789999999999999999999999999999999754
No 57
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.84 E-value=2.6e-20 Score=137.85 Aligned_cols=109 Identities=27% Similarity=0.453 Sum_probs=94.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
.+.+||||||++..+..+..+|+..||.|..+.++.+|++.+ .... |+||+|+.||+++|+++++.|+
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~-----------~~~~-dlvllD~~lp~~~g~~~~~~l~ 73 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVV-----------SHEH-KVVFMDVCMPGVENYQIALRIH 73 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHC-----------CTTC-SEEEEECCSSTTTTTHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH-----------hccC-CEEEEeCCCCCCcHHHHHHHHH
Confidence 357899999999999999999999999999999999999987 3334 9999999999999999999998
Q ss_pred hcCCC---CCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVF---REVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~---~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+.... ...+||++|+..+.....++++.|+++||.||++.+
T Consensus 74 ~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~ 117 (136)
T 1dcf_A 74 EKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLD 117 (136)
T ss_dssp HHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHH
T ss_pred HhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHH
Confidence 53211 223588899999999999999999999999999754
No 58
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.84 E-value=1.5e-20 Score=138.84 Aligned_cols=107 Identities=26% Similarity=0.390 Sum_probs=97.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..+...|+..||.+..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-----------~~~~dlvl~D~~l~~~~g~~~~~~l~~ 71 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAE-----------TEKPDLIVLDVMLPKLDGIEVCKQLRQ 71 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HHCCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHh-----------hcCCCEEEEecCCCCCCHHHHHHHHHc
Confidence 358999999999999999999999999999999999999883 346899999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+.+|||++|+..+......+++.|+++||.||++.+
T Consensus 72 ~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~ 109 (136)
T 1mvo_A 72 Q--KLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPR 109 (136)
T ss_dssp T--TCCCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHH
T ss_pred C--CCCCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHH
Confidence 6 4679999999998888888999999999999999753
No 59
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.84 E-value=3.5e-21 Score=144.25 Aligned_cols=110 Identities=9% Similarity=0.173 Sum_probs=100.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcC-CEEEEEcCHHHHHHHhhhcCCCCCCCCCC-CceeEEEEeCCCCCCCHHHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISS-CKVTAVESGTRALQYLGLDGEQSNVGFDA-LKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g-~~v~~a~~g~eal~~l~~~~~~~~~~~~~-~~~dlil~D~~mp~~~G~e~~~ 168 (213)
....+||||||++..+..+..+|+..| |.+..+.++.+++..+. .. ..||+||+|+.||+++|+++++
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~----------~~~~~~dlvi~D~~l~~~~g~~~~~ 87 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRT----------DGLDAFDILMIDGAALDTAELAAIE 87 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCH----------HHHTTCSEEEEECTTCCHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHH----------hcCCCCCEEEEeCCCCCccHHHHHH
Confidence 346799999999999999999999999 99999999999887763 22 5799999999999999999999
Q ss_pred HHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 169 KIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.||+. .+.+|||++|+..+.+...+++++|+++||.||++.+
T Consensus 88 ~l~~~--~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~ 129 (146)
T 4dad_A 88 KLSRL--HPGLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPR 129 (146)
T ss_dssp HHHHH--CTTCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHH
T ss_pred HHHHh--CCCCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHH
Confidence 99987 5789999999999999999999999999999999754
No 60
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.84 E-value=3.2e-20 Score=138.15 Aligned_cols=106 Identities=25% Similarity=0.423 Sum_probs=99.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..++..|+..||.+..+.++.+|++.+ ....||+||+|+ ||+++|+++++.||+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~d~-~~~~~g~~~~~~l~~ 71 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFL-----------RREKIDLVFVDV-FEGEESLNLIRRIRE 71 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHH-----------TTSCCSEEEEEC-TTTHHHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHH-----------hccCCCEEEEeC-CCCCcHHHHHHHHHH
Confidence 56899999999999999999999999999999999999999 556799999999 999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 72 ~--~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~ 109 (142)
T 2qxy_A 72 E--FPDTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLD 109 (142)
T ss_dssp H--CTTCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHH
T ss_pred H--CCCCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHH
Confidence 7 5689999999999999999999999999999999754
No 61
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.84 E-value=2.7e-20 Score=140.45 Aligned_cols=109 Identities=24% Similarity=0.387 Sum_probs=98.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCE--EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCK--VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~--v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
..+.+||||||++..+..+..+|++.|+. +..+.++.+|++.+. ...||+||+|+.||+++|+++++
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-----------~~~~dlii~d~~l~~~~g~~~~~ 81 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIK-----------AHLPDVALLDYRMPGMDGAQVAA 81 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHH-----------HHCCSEEEEETTCSSSCHHHHHH
T ss_pred CceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCHHHHHH
Confidence 45689999999999999999999999964 568999999999984 34799999999999999999999
Q ss_pred HHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 169 KIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.||+. .+.+|||++|+..+.....+++++|+++||.||++.+
T Consensus 82 ~l~~~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~ 123 (152)
T 3eul_A 82 AVRSY--ELPTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRT 123 (152)
T ss_dssp HHHHT--TCSCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHH
T ss_pred HHHhc--CCCCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHH
Confidence 99987 5789999999999999999999999999999999753
No 62
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.84 E-value=1.5e-20 Score=140.73 Aligned_cols=110 Identities=21% Similarity=0.308 Sum_probs=100.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
...+||||||++..+..+...|+..||.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlii~d~~l~~~~g~~~~~~l~ 75 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAV-----------KTHPHLIITEANMPKISGMDLFNSLK 75 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHH-----------HHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHH-----------cCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 4579999999999999999999999999999999999999984 34699999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+....+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 76 ~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~ 116 (147)
T 2zay_A 76 KNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAI 116 (147)
T ss_dssp TSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHH
T ss_pred cCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHH
Confidence 84446789999999999999999999999999999999754
No 63
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.83 E-value=6.7e-20 Score=138.51 Aligned_cols=108 Identities=25% Similarity=0.413 Sum_probs=100.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
+..+||||||++..+..+...|+..||.+..+.++.+|++.+ ....||+||+|+.||+++|+++++.|+
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~d~~l~~~~g~~~~~~l~ 74 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEAL-----------KGTSVQLVISDMRMPEMGGEVFLEQVA 74 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHH-----------TTSCCSEEEEESSCSSSCHHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH-----------hcCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 467999999999999999999999999999999999999998 455799999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcC-CCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEG-AEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G-~~~~L~KP~~~~ 212 (213)
+. .+.+|||++|+..+......+++.| +++||.||++.+
T Consensus 75 ~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~ 114 (154)
T 2rjn_A 75 KS--YPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDE 114 (154)
T ss_dssp HH--CTTSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHH
T ss_pred Hh--CCCCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHH
Confidence 86 5789999999999888999999998 999999999753
No 64
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.83 E-value=1.8e-20 Score=134.70 Aligned_cols=104 Identities=25% Similarity=0.430 Sum_probs=93.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||||||++..+..++..|+..||.+..+.++.+|++.+. ...||++|+|+.||+++|+++++.+|+.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-----------~~~~dlvl~D~~l~~~~g~~~~~~l~~~ 70 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFF-----------SGNYDLVILDIEMPGISGLEVAGEIRKK 70 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HSCCSEEEECSCCSSSCHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-----------cCCCCEEEEECCCCCCCHHHHHHHHHcc
Confidence 37999999999999999999999999999999999999884 3469999999999999999999999986
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|+|++|+..+.. ..+++.|+++||.||++.+
T Consensus 71 --~~~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~ 105 (116)
T 3a10_A 71 --KKDAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFD 105 (116)
T ss_dssp --CTTCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTH
T ss_pred --CCCCeEEEEECCcchH--HHHHhccccceEECCCCHH
Confidence 4689999999986554 6788999999999999864
No 65
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.83 E-value=2.5e-20 Score=138.75 Aligned_cols=116 Identities=23% Similarity=0.421 Sum_probs=100.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
+..+||||||++..+..++..|++.|+ .+..+.++.+|++.+...... ....||+||+|+.||+++|+++++.
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~-----~~~~~dlii~D~~l~~~~g~~~~~~ 80 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKE-----NKIHPKLILLDINIPKMNGIEFLKE 80 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTC-----CCCCCSEEEEETTCTTSCHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccc-----cCCCCCEEEEecCCCCCCHHHHHHH
Confidence 357899999999999999999999998 999999999999998531100 0257999999999999999999999
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
||+....+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 81 l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~ 123 (143)
T 2qvg_A 81 LRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYG 123 (143)
T ss_dssp HTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHH
T ss_pred HHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHH
Confidence 9986433789999999999999999999999999999999854
No 66
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.83 E-value=3.4e-20 Score=147.85 Aligned_cols=107 Identities=25% Similarity=0.460 Sum_probs=97.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcC-CEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISS-CKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g-~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
..+||||||++..+..+..+|+..| +.+ ..+.++.+|++.+. ...||+||+|+.||+++|+++++.|
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~-----------~~~~dlvllD~~lp~~~g~~~~~~l 73 (215)
T 1a04_A 5 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE-----------SLDPDLILLDLNMPGMNGLETLDKL 73 (215)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHH-----------HHCCSEEEEETTSTTSCHHHHHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH-----------hcCCCEEEEeCCCCCCcHHHHHHHH
Confidence 4689999999999999999999874 877 78999999999884 3469999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
|+. .+.+|||++|+..+.+....+++.|+++||.||++.+
T Consensus 74 r~~--~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~ 113 (215)
T 1a04_A 74 REK--SLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPE 113 (215)
T ss_dssp HHS--CCCSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHH
T ss_pred HHh--CCCCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHH
Confidence 986 5789999999999999999999999999999999754
No 67
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.83 E-value=1e-20 Score=140.64 Aligned_cols=110 Identities=22% Similarity=0.388 Sum_probs=100.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
...+||||||++..+..+..+|+..||.|..+.++.+|++.+ ....||+||+|+.||+++|+++++.||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlii~d~~l~~~~g~~~~~~l~ 74 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLL-----------KKGFSGVVLLDIMMPGMDGWDTIRAIL 74 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HTCCCEEEEEESCCSSSCHHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 467999999999999999999999999999999999999998 445799999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+....+.+|||++|+..+......++++|+++||.||++.+
T Consensus 75 ~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~ 115 (142)
T 3cg4_A 75 DNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNE 115 (142)
T ss_dssp HTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHH
T ss_pred hhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHH
Confidence 84446789999999998888888899999999999999754
No 68
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.83 E-value=1.9e-20 Score=162.96 Aligned_cols=105 Identities=30% Similarity=0.551 Sum_probs=95.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++.++..++.+|+..||.|..+.++.+|++.+. ...||+||+|+.||++||+++++.||+
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~-----------~~~~dlvllD~~mp~~~G~~~~~~lr~ 73 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFE-----------SEQPDLVICDLRMPQIDGLELIRRIRQ 73 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHH-----------HSCCSEEEECCCSSSSCTHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh-----------hCCCCEEEEcCCCCCCCHHHHHHHHHh
Confidence 579999999999999999999999999999999999999983 457999999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVK 210 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~ 210 (213)
. .+++|||++|+..+.+...++++.|+++||.||++
T Consensus 74 ~--~~~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~ 109 (394)
T 3eq2_A 74 T--ASETPIIVLSGAGVMSDAVEALRLGAADYLIKPLE 109 (394)
T ss_dssp T--TCCCCEEEC---CHHHHHHHHHHHTCSEECCSSCS
T ss_pred h--CCCCcEEEEEcCCCHHHHHHHHhcChhhEEECCCC
Confidence 6 57899999999999999999999999999999994
No 69
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.83 E-value=6.9e-20 Score=138.60 Aligned_cols=107 Identities=27% Similarity=0.456 Sum_probs=99.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
+.+||||||++..+..+..+|+..||.|..+.++.+|++.+ ....||+||+|+.||+++|+++++.|++
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dliild~~l~~~~g~~~~~~l~~ 71 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGL-----------SADFAGIVISDIRMPGMDGLALFRKILA 71 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTC-----------CTTCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 46899999999999999999999999999999999999988 5567999999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+.+|||++|+..+......+++.|+++||.||++.+
T Consensus 72 ~--~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~ 109 (155)
T 1qkk_A 72 L--DPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAAD 109 (155)
T ss_dssp H--CTTSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHH
T ss_pred h--CCCCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHH
Confidence 7 5789999999999888999999999999999999753
No 70
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.83 E-value=3.8e-20 Score=133.62 Aligned_cols=105 Identities=27% Similarity=0.476 Sum_probs=96.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||||||++..+..+...|+..||.+..+.++.+++..+. ...||++|+|+.||+++|+++++.+|+
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvi~D~~l~~~~g~~~~~~l~~- 69 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-----------TRKPDLIILDLGLPDGDGIEFIRDLRQ- 69 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-----------HHCCSEEEEESEETTEEHHHHHHHHHT-
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHh-----------cCCCCEEEEeCCCCCCcHHHHHHHHHh-
Confidence 47999999999999999999999999999999999998873 346899999999999999999999994
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|+|++|+..+.....++++.|+++|+.||++.+
T Consensus 70 --~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~ 106 (121)
T 1zh2_A 70 --WSAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIG 106 (121)
T ss_dssp --TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHH
T ss_pred --CCCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHH
Confidence 4679999999999999999999999999999999754
No 71
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.83 E-value=1.2e-20 Score=140.63 Aligned_cols=107 Identities=21% Similarity=0.313 Sum_probs=97.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CCHHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MTGYELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~G~e~~~~ir 171 (213)
..+||||||++..+..++.+|+..||.+..+.++.+|++.+. ....||+||+|+.||+ ++|+++++.||
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~----------~~~~~dlvi~D~~l~~~~~g~~~~~~l~ 74 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVS----------GGWYPDLILMDIELGEGMDGVQTALAIQ 74 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------TTCCCSEEEEESSCSSSCCHHHHHHHHH
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHh----------cCCCCCEEEEeccCCCCCCHHHHHHHHH
Confidence 569999999999999999999999999999999999999984 2257999999999995 99999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+. +.+|||++|+..+.....+++++|+++||.||++.+
T Consensus 75 ~~---~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~ 112 (140)
T 3h5i_A 75 QI---SELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQ 112 (140)
T ss_dssp HH---CCCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHH
T ss_pred hC---CCCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHH
Confidence 75 689999999999888888999999999999999754
No 72
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.82 E-value=2.9e-20 Score=152.53 Aligned_cols=106 Identities=19% Similarity=0.378 Sum_probs=98.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------~~~~DlvllD~~lp~~~G~~l~~~lr~ 105 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAR-----------EDHPDLILLDLGLPDFDGGDVVQRLRK 105 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-----------HSCCSEEEEECCSCHHHHHHHHHHHHT
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-----------cCCCCEEEEcCCCCCCCHHHHHHHHHc
Confidence 468999999999999999999999999999999999999983 457999999999999999999999997
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|||++|+..+.....+++++|+++||.||++.+
T Consensus 106 ---~~~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~ 142 (249)
T 3q9s_A 106 ---NSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPD 142 (249)
T ss_dssp ---TCCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHH
T ss_pred ---CCCCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHH
Confidence 3679999999999999999999999999999999854
No 73
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.82 E-value=3.2e-20 Score=164.31 Aligned_cols=108 Identities=29% Similarity=0.471 Sum_probs=99.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||||||++..+..+..+|+..||.|..+.+|.+|++.+. ...||+||+|+.||+++|+++++.||+.
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~-----------~~~~dlvllD~~mp~~~G~~~~~~l~~~ 70 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAA-----------RDLPDIILLDVMMPGMDGFTVCRKLKDD 70 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HHCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHh-----------cCCCCEEEEcCCCCCCCHHHHHHHHhcC
Confidence 47999999999999999999999999999999999999984 3469999999999999999999999986
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
...+.+|||++|+..+.....+++++|+++||.||++.+
T Consensus 71 ~~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~ 109 (459)
T 1w25_A 71 PTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDV 109 (459)
T ss_dssp TTTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHH
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHH
Confidence 445789999999999999999999999999999999753
No 74
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.82 E-value=1.7e-19 Score=136.18 Aligned_cols=107 Identities=20% Similarity=0.305 Sum_probs=99.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh-cCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQI-SSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~-~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
..+||||||++..+..+..+|+. .||.+. .+.++.+|++.+ ....||+||+|+.||+++|+++++.|
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l-----------~~~~~dlii~D~~l~~~~g~~~~~~l 73 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLY-----------RETTPDIVVMDLTLPGPGGIEATRHI 73 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHH-----------HTTCCSEEEECSCCSSSCHHHHHHHH
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHH-----------hcCCCCEEEEecCCCCCCHHHHHHHH
Confidence 57899999999999999999998 799988 899999999998 44579999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
|+. .+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 74 ~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~ 113 (153)
T 3cz5_A 74 RQW--DGAARILIFTMHQGSAFALKAFEAGASGYVTKSSDPA 113 (153)
T ss_dssp HHH--CTTCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTT
T ss_pred HHh--CCCCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHH
Confidence 987 5789999999999999999999999999999999875
No 75
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.82 E-value=3.5e-20 Score=138.76 Aligned_cols=108 Identities=29% Similarity=0.400 Sum_probs=94.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhc-CCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCC-ceeEEEEeCCCCCCCHHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQIS-SCKVT-AVESGTRALQYLGLDGEQSNVGFDAL-KVNLIITDYTMPGMTGYELL 167 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~-g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~-~~dlil~D~~mp~~~G~e~~ 167 (213)
....+||||||++..+..++.+|++. |+.+. .+.++.+|++.+. .. .||+||+|+.||+++|++++
T Consensus 11 ~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-----------~~~~~dlvilD~~l~~~~g~~~~ 79 (145)
T 3kyj_B 11 GSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLA-----------AQPNVDLILLDIEMPVMDGMEFL 79 (145)
T ss_dssp CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHH-----------HCTTCCEEEECTTSCCCTTCHHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHh-----------cCCCCCEEEEeCCCCCCCHHHHH
Confidence 45679999999999999999999988 88864 8999999999984 34 69999999999999999999
Q ss_pred HHHHhcCCCCCCcEEEEec--CCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 168 KKIKESSVFREVPVVIMSS--EDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 168 ~~ir~~~~~~~~pII~lt~--~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+.||+.. ..|++++++ ..+.....++++.|+++||.||++.+
T Consensus 80 ~~lr~~~---~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~ 123 (145)
T 3kyj_B 80 RHAKLKT---RAKICMLSSVAVSGSPHAARARELGADGVVAKPSGTV 123 (145)
T ss_dssp HHHHHHC---CCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC
T ss_pred HHHHhcC---CCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHH
Confidence 9999863 389999987 55566788999999999999999864
No 76
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.82 E-value=7.2e-20 Score=135.56 Aligned_cols=107 Identities=23% Similarity=0.331 Sum_probs=98.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC-----CCCHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP-----GMTGYELL 167 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp-----~~~G~e~~ 167 (213)
..+||||||++..+..++..|+..||.+..+.++.+|++.+. ...||+||+|+.|| +++|++++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlvi~d~~~~~~~~~~~~g~~~~ 71 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLR-----------EENPEVVLLDMNFTSGINNGNEGLFWL 71 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHH-----------HSCEEEEEEETTTTC-----CCHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHH-----------cCCCCEEEEeCCcCCCCCCCccHHHHH
Confidence 468999999999999999999999999999999999999984 44799999999999 99999999
Q ss_pred HHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 168 KKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 168 ~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+.||+. .+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 72 ~~l~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~ 114 (140)
T 2qr3_A 72 HEIKRQ--YRDLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQ 114 (140)
T ss_dssp HHHHHH--CTTCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHH
T ss_pred HHHHhh--CcCCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHH
Confidence 999987 5789999999999888999999999999999999753
No 77
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.82 E-value=5.3e-20 Score=136.31 Aligned_cols=108 Identities=17% Similarity=0.297 Sum_probs=98.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC-CCCHHHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP-GMTGYELLK 168 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp-~~~G~e~~~ 168 (213)
....+||||||++..+..++..|+..||.+. .+.++.+|++.+. ...||+||+|+.|| +++|+++++
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~-----------~~~~dlii~d~~~~~~~~g~~~~~ 75 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAP-----------DLRPDIALVDIMLCGALDGVETAA 75 (140)
T ss_dssp -CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-----------HHCCSEEEEESSCCSSSCHHHHHH
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHH-----------hCCCCEEEEecCCCCCCCHHHHHH
Confidence 3467999999999999999999999999999 5999999999984 34699999999998 799999999
Q ss_pred HHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 169 KIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.||+. +.+|||++|+..+......+++.|+++||.||++.+
T Consensus 76 ~l~~~---~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~ 116 (140)
T 3cg0_A 76 RLAAG---CNLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAAD 116 (140)
T ss_dssp HHHHH---SCCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHH
T ss_pred HHHhC---CCCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHH
Confidence 99986 689999999999999999999999999999999754
No 78
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.82 E-value=8.4e-20 Score=137.70 Aligned_cols=107 Identities=28% Similarity=0.435 Sum_probs=97.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..+..+|+. ||.+..+.++.+|++.+.. ...||+||+|+.||+++|+++++.||+
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~----------~~~~dlvi~D~~l~~~~g~~~~~~l~~ 72 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKK----------SDPFSVIMVDMRMPGMEGTEVIQKARL 72 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHH----------SCCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHc----------CCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 56999999999999999999985 9999999999999999842 224699999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcC-CCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEG-AEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G-~~~~L~KP~~~~ 212 (213)
. .+.+|||++|+..+.....++++.| +++||.||++.+
T Consensus 73 ~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~ 111 (151)
T 3kcn_A 73 I--SPNSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMS 111 (151)
T ss_dssp H--CSSCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHH
T ss_pred c--CCCcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHH
Confidence 7 5789999999999999999999999 999999999754
No 79
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.82 E-value=1.6e-19 Score=138.53 Aligned_cols=108 Identities=28% Similarity=0.350 Sum_probs=93.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcC-C-EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISS-C-KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g-~-~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
....+||||||++..+..++.+|+..| + .+..+.++.+|++.+. ...||+||+|+.||+++|+++++
T Consensus 23 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-----------~~~~dlvilD~~l~~~~g~~l~~ 91 (164)
T 3t8y_A 23 DRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAI-----------ELKPDVITMDIEMPNLNGIEALK 91 (164)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-----------HHCCSEEEECSSCSSSCHHHHHH
T ss_pred cCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhc-----------cCCCCEEEEeCCCCCCCHHHHHH
Confidence 456899999999999999999999875 3 3457999999999984 34699999999999999999999
Q ss_pred HHHhcCCCCCCcEEEEecCCCHH--HHHHHHHcCCCeeeeCCCCCC
Q 048660 169 KIKESSVFREVPVVIMSSEDVLT--QIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~~~~--~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.||+. .+ +|+|++|+..+.. ...+++++|+++||.||++.+
T Consensus 92 ~lr~~--~~-~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~ 134 (164)
T 3t8y_A 92 LIMKK--AP-TRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSI 134 (164)
T ss_dssp HHHHH--SC-CEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSS
T ss_pred HHHhc--CC-ceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHH
Confidence 99987 34 8999999977654 677899999999999999854
No 80
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.82 E-value=3.7e-20 Score=138.40 Aligned_cols=106 Identities=26% Similarity=0.372 Sum_probs=90.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHh--hcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQ--ISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~--~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
.+||||||++..+..+...|. ..|+.+. .+.++.+|++.+ ....||+||+|+.||+++|+++++.|
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~-----------~~~~~dlvllD~~lp~~~g~~l~~~l 71 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIA-----------LKHPPNVLLTDVRMPRMDGIELVDNI 71 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHH-----------TTSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 589999999999999999997 3688777 899999999998 45579999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
|+. .+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 72 ~~~--~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~ 111 (141)
T 3cu5_A 72 LKL--YPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPS 111 (141)
T ss_dssp HHH--CTTCEEEEECCSTTTCCC------CCCEEECSSCCHH
T ss_pred Hhh--CCCCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHH
Confidence 986 5789999999998888888999999999999999754
No 81
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.82 E-value=1.2e-20 Score=140.28 Aligned_cols=108 Identities=23% Similarity=0.366 Sum_probs=89.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..+..+|+.. |.+..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~-----------~~~~dlvi~D~~l~~~~g~~~~~~l~~ 70 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQID-----------HHHPDLVILDMDIIGENSPNLCLKLKR 70 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHH-----------HHCCSEEEEETTC------CHHHHHHT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHh-----------cCCCCEEEEeCCCCCCcHHHHHHHHHc
Confidence 468999999999999999999988 99999999999999984 347999999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
....+.+|||++|+..+.+...+++++|+++||.||++.+
T Consensus 71 ~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~ 110 (140)
T 3n53_A 71 SKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRN 110 (140)
T ss_dssp STTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHH
T ss_pred CcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHH
Confidence 7544899999999999888888999999999999999754
No 82
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.82 E-value=5e-20 Score=147.58 Aligned_cols=106 Identities=25% Similarity=0.375 Sum_probs=98.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
++||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-----------~~~~dlvllD~~l~~~~g~~~~~~lr~~ 71 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMAL-----------NEPFDVVILDIMLPVHDGWEILKSMRES 71 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HSCCSEEEEESCCSSSCHHHHHHHHHHT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999883 4479999999999999999999999986
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|||++|+..+......++++|+++||.||++.+
T Consensus 72 --~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~ 108 (225)
T 1kgs_A 72 --GVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLR 108 (225)
T ss_dssp --TCCCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHH
T ss_pred --CCCCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHH
Confidence 5789999999999888999999999999999999754
No 83
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.81 E-value=1.5e-19 Score=134.31 Aligned_cols=105 Identities=23% Similarity=0.360 Sum_probs=93.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||||||++..+..+..+|+.. |.+..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+.
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~-----------~~~~dlvl~D~~lp~~~g~~~~~~l~~~ 69 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILE-----------EEWVQVIICDQRMPGRTGVDFLTEVRER 69 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHH-----------HSCEEEEEEESCCSSSCHHHHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHh-----------cCCCCEEEEeCCCCCCcHHHHHHHHHHh
Confidence 37999999999999999999875 99999999999999884 3469999999999999999999999986
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHc-CCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEE-GAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~-G~~~~L~KP~~~~ 212 (213)
.+.+|+|++|+..+......++.. |+++||.||++.+
T Consensus 70 --~~~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~ 107 (139)
T 2jk1_A 70 --WPETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPE 107 (139)
T ss_dssp --CTTSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHH
T ss_pred --CCCCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHH
Confidence 568999999999887778888876 5999999999754
No 84
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.81 E-value=8.6e-20 Score=159.28 Aligned_cols=106 Identities=29% Similarity=0.519 Sum_probs=99.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
++||||||++..+..++.+|+..||.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.|++.
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~-----------~~~~DlvllD~~mp~~dG~ell~~lr~~ 69 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS-----------EKHFNVVLLDLLLPDVNGLEILKWIKER 69 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHH-----------HSCCSEEEEESBCSSSBHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-----------hCCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 37999999999999999999999999999999999999983 4579999999999999999999999986
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|||++|++.+.+...++++.|+++||.||++.+
T Consensus 70 --~~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~ 106 (387)
T 1ny5_A 70 --SPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLE 106 (387)
T ss_dssp --CTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHH
T ss_pred --CCCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHH
Confidence 5789999999999999999999999999999999754
No 85
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.81 E-value=4.2e-20 Score=148.73 Aligned_cols=107 Identities=29% Similarity=0.443 Sum_probs=98.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
.++||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-----------~~~~dlvllD~~l~~~~g~~~~~~l~~ 75 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSAT-----------ENRPDAIVLDINMPVLDGVSVVTALRA 75 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HSCCSEEEEESSCSSSCHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHH-----------hCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 468999999999999999999999999999999999999883 447999999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+.+|||++|+..+......++++|+++||.||++.+
T Consensus 76 ~--~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~ 113 (233)
T 1ys7_A 76 M--DNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLA 113 (233)
T ss_dssp T--TCCCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHH
T ss_pred c--CCCCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHH
Confidence 6 4789999999999888888999999999999999754
No 86
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.81 E-value=5.9e-20 Score=145.57 Aligned_cols=106 Identities=23% Similarity=0.382 Sum_probs=96.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
..+||||||++..+..+..+|+..||.+. .+.++.+|++.+. ...||+||+|+.||+++|+++++.|+
T Consensus 13 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~-----------~~~~dlvi~D~~~p~~~g~~~~~~l~ 81 (205)
T 1s8n_A 13 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAE-----------LHKPDLVIMDVKMPRRDGIDAASEIA 81 (205)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-----------HHCCSEEEEESSCSSSCHHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----------hcCCCEEEEeCCCCCCChHHHHHHHH
Confidence 36899999999999999999999999988 8999999999884 34699999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+.. ..|||++|+..+......+++.|+++||.||++.+
T Consensus 82 ~~~---~~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~ 119 (205)
T 1s8n_A 82 SKR---IAPIVVLTAFSQRDLVERARDAGAMAYLVKPFSIS 119 (205)
T ss_dssp HTT---CSCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHH
T ss_pred hcC---CCCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHH
Confidence 863 34999999999999999999999999999999754
No 87
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.80 E-value=1e-19 Score=132.05 Aligned_cols=107 Identities=21% Similarity=0.344 Sum_probs=97.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC-CCCHHHHHHHHHh
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP-GMTGYELLKKIKE 172 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp-~~~G~e~~~~ir~ 172 (213)
.+||||||++..+..+...|++.||.+..+.++.+|++.+. ...||+||+|+.|| +++|+++++.+|+
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-----------~~~~dlvi~d~~~~~~~~g~~~~~~l~~ 74 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIR-----------RDRPDLVVLAVDLSAGQNGYLICGKLKK 74 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHH-----------HHCCSEEEEESBCGGGCBHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCCHHHHHHHHhc
Confidence 58999999999999999999999999999999999999984 34699999999999 9999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
....+.+|||++ +..+......+++.|+++|+.||++.+
T Consensus 75 ~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~ 113 (127)
T 2gkg_A 75 DDDLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDAD 113 (127)
T ss_dssp STTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHH
T ss_pred CccccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHH
Confidence 654578999999 888788888999999999999999754
No 88
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.80 E-value=6.3e-20 Score=134.89 Aligned_cols=106 Identities=20% Similarity=0.258 Sum_probs=95.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..++.+|+..++.+..+.++.++++.+ ... ||+||+|+.||+++|+++++.||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~-~dlvi~D~~l~~~~g~~~~~~l~~ 70 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLS-----------LNK-QDIIILDLMMPDMDGIEVIRHLAE 70 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSC-----------CCT-TEEEEEECCTTTTHHHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhh-----------ccC-CCEEEEeCCCCCCCHHHHHHHHHh
Confidence 46899999999999999999999888999999999999876 445 999999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCH-----HHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVL-----TQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~-----~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+.+|||++|+..+. ....+++..|+++||.||++.+
T Consensus 71 ~--~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~ 113 (135)
T 3eqz_A 71 H--KSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTE 113 (135)
T ss_dssp T--TCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHH
T ss_pred C--CCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHH
Confidence 6 578999999999875 6677788999999999999854
No 89
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.80 E-value=6.5e-20 Score=157.00 Aligned_cols=109 Identities=24% Similarity=0.412 Sum_probs=99.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHh-hcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQ-ISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~-~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
..+||||||++..+..++.+|. ..||.|..+.+|.+|++.+. ...||+||+|+.||+++|+++++.||
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~-----------~~~~dlvl~D~~mp~~~G~~~~~~l~ 86 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVAN-----------QIKPTVILQDLVMPGVDGLTLLAAYR 86 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHH-----------HHCCSEEEEESBCSSSBHHHHHHHHT
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHH-----------hCCCCEEEEeCCCCCCCHHHHHHHHh
Confidence 4679999999999999999996 46899999999999999984 34699999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+....+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 87 ~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~ 127 (358)
T 3bre_A 87 GNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAI 127 (358)
T ss_dssp TSTTTTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCHH
T ss_pred cCcccCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCHH
Confidence 86546789999999999999999999999999999999753
No 90
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.79 E-value=3.9e-19 Score=126.94 Aligned_cols=105 Identities=21% Similarity=0.315 Sum_probs=95.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||||||++..+..+...|+..||.+..+.++.++++.+. ...||++|+|+.||+++|+++++.+|+.
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~-----------~~~~dlii~d~~~~~~~~~~~~~~l~~~ 70 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLD-----------LLQPIVILMAWPPPDQSCLLLLQHLREH 70 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-----------HHCCSEEEEECSTTCCTHHHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHH-----------hcCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 48999999999999999999999999999999999999984 3469999999999999999999999987
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
...+.+|+|++|+..+.. .+++.|+++|+.||++.+
T Consensus 71 ~~~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~ 106 (119)
T 2j48_A 71 QADPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDPQ 106 (119)
T ss_dssp CCCSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTTH
T ss_pred cccCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCHH
Confidence 544789999999987765 889999999999999864
No 91
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.79 E-value=3e-19 Score=134.79 Aligned_cols=107 Identities=30% Similarity=0.343 Sum_probs=87.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc-CC-EEEEEcCHHHHHHHhhhcCCCCCCCCCC-CceeEEEEeCCCCCCCHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQIS-SC-KVTAVESGTRALQYLGLDGEQSNVGFDA-LKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~-g~-~v~~a~~g~eal~~l~~~~~~~~~~~~~-~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
..+||||||++..+..+..+|+.. |+ .+..+.++.+|++.+. . ..||+||+|+.||+++|+++++.
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~-----------~~~~~dlvi~d~~l~~~~g~~~~~~ 71 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLE-----------ADNTVDLILLDVNLPDAEAIDGLVR 71 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHH-----------TTCCCSEEEECC------CHHHHHH
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHh-----------ccCCCCEEEEeCCCCCCchHHHHHH
Confidence 468999999999999999999988 88 7889999999999983 4 57999999999999999999999
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
||+. .+.+|||++|+..+......+++.|+++||.||++.+
T Consensus 72 l~~~--~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~ 112 (154)
T 2qsj_A 72 LKRF--DPSNAVALISGETDHELIRAALEAGADGFIPKSADPQ 112 (154)
T ss_dssp HHHH--CTTSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHH
T ss_pred HHHh--CCCCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHH
Confidence 9987 5789999999998888899999999999999999753
No 92
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.78 E-value=4.4e-19 Score=142.62 Aligned_cols=105 Identities=27% Similarity=0.445 Sum_probs=97.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+.
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------~~~~dlvllD~~l~~~~g~~~~~~l~~~ 73 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFD-----------RAGADIVLLDLMLPGMSGTDVCKQLRAR 73 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH-----------HHCCSEEEEESSCSSSCHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-----------ccCCCEEEEECCCCCCCHHHHHHHHHcC
Confidence 58999999999999999999999999999999999999884 3469999999999999999999999984
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+.+|||++|+..+......+++.|+++||.||++.+
T Consensus 74 ---~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~ 109 (230)
T 2oqr_A 74 ---SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSAR 109 (230)
T ss_dssp ---CSCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHH
T ss_pred ---CCCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHH
Confidence 579999999998888899999999999999999754
No 93
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.78 E-value=9.6e-19 Score=130.22 Aligned_cols=106 Identities=23% Similarity=0.401 Sum_probs=91.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhc-CCE-EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQIS-SCK-VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~-g~~-v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
...+||||||++..+..+...|+.. |+. +..+.++.+|++.+. ...||+||+|+.||+++|+++++.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-----------~~~~dlvi~d~~l~~~~g~~~~~~ 76 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQ-----------HNKVDAIFLDINIPSLDGVLLAQN 76 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHH-----------HCCCSEEEECSSCSSSCHHHHHHH
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH-----------hCCCCEEEEecCCCCCCHHHHHHH
Confidence 3579999999999999999999986 888 458999999999984 346999999999999999999999
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
||+. .+..|||++|+.. +...++++.|+++||.||++.+
T Consensus 77 l~~~--~~~~~ii~~s~~~--~~~~~~~~~g~~~~l~KP~~~~ 115 (143)
T 2qv0_A 77 ISQF--AHKPFIVFITAWK--EHAVEAFELEAFDYILKPYQES 115 (143)
T ss_dssp HTTS--TTCCEEEEEESCC--TTHHHHHHTTCSEEEESSCCHH
T ss_pred HHcc--CCCceEEEEeCCH--HHHHHHHhCCcceEEeCCCCHH
Confidence 9985 4677899999874 3577899999999999999753
No 94
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.78 E-value=3.5e-19 Score=144.45 Aligned_cols=106 Identities=26% Similarity=0.510 Sum_probs=97.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..+..+|+..||.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-----------~~~~dlvilD~~l~~~~g~~~~~~lr~ 73 (238)
T 2gwr_A 5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVR-----------ELRPDLVLLDLMLPGMNGIDVCRVLRA 73 (238)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHH-----------HHCCSEEEEESSCSSSCHHHHHHHHHT
T ss_pred cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-----------hCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 358999999999999999999999999999999999999884 346999999999999999999999997
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. +.+|||++|+..+......++++|+++||.||++.+
T Consensus 74 ~---~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~ 110 (238)
T 2gwr_A 74 D---SGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPK 110 (238)
T ss_dssp T---CCCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHH
T ss_pred C---CCCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHH
Confidence 5 379999999999888899999999999999999754
No 95
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.78 E-value=1.7e-18 Score=128.04 Aligned_cols=104 Identities=20% Similarity=0.314 Sum_probs=95.5
Q ss_pred cCCccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 90 CSKELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 90 ~~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
.....+||||||++..+..+..+|+..||.+..+.++.+|++.+. ...||+|| ||+++|+++++.
T Consensus 15 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-----------~~~~dlvi----~~~~~g~~~~~~ 79 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMD-----------IRNYDLVM----VSDKNALSFVSR 79 (137)
T ss_dssp CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-----------HSCCSEEE----ECSTTHHHHHHH
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHH-----------cCCCCEEE----EcCccHHHHHHH
Confidence 345679999999999999999999999999999999999999984 34799999 899999999999
Q ss_pred HHhcCCCC-CCcEEEEecCCCHHHHHHHHHcCCCeeeeCCC-CC
Q 048660 170 IKESSVFR-EVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV-KL 211 (213)
Q Consensus 170 ir~~~~~~-~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~-~~ 211 (213)
||+. + .+|||++|+..+.....++++.|+++||.||+ +.
T Consensus 80 l~~~---~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~ 120 (137)
T 2pln_A 80 IKEK---HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSI 120 (137)
T ss_dssp HHHH---STTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCH
T ss_pred HHhc---CCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCH
Confidence 9986 5 89999999999999999999999999999999 64
No 96
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.78 E-value=1.4e-18 Score=127.25 Aligned_cols=106 Identities=22% Similarity=0.292 Sum_probs=94.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCC-ceeEEEEeCCCCC-CCHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDAL-KVNLIITDYTMPG-MTGYELLKK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~-~~dlil~D~~mp~-~~G~e~~~~ 169 (213)
...+||||||++..+..+...|+..||.+..+.++.+|++.+. .. .||+||+|+.||+ ++|+++++.
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~~dlvi~d~~l~~~~~g~~~~~~ 72 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLK-----------SGAAIDGVVTDIRFCQPPDGWQVARV 72 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------TTCCCCEEEEESCCSSSSCHHHHHHH
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHH-----------cCCCCCEEEEeeeCCCCCCHHHHHHH
Confidence 3578999999999999999999999999999999999999983 44 7999999999997 999999999
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
||+. .+.+|||++|+..+......++..| +||.||++.+
T Consensus 73 l~~~--~~~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~ 111 (132)
T 2rdm_A 73 AREI--DPNMPIVYISGHAALEWASNGVPDS--IILEKPFTSA 111 (132)
T ss_dssp HHHH--CTTCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHH
T ss_pred HHhc--CCCCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHH
Confidence 9987 5689999999998887777776665 7999999754
No 97
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.77 E-value=4.1e-19 Score=132.07 Aligned_cols=106 Identities=24% Similarity=0.401 Sum_probs=91.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+||||||++..+..++.+|+..|+.+..+.++.+|++.+. ...||+||+|+.||+++|+++++.||+
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~-----------~~~~dlvllD~~lp~~~g~~~~~~l~~ 78 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQ-----------NRQFDVIIMDIQMPVMDGLEAVSEIRN 78 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHH-----------HSCCSEEEECTTCCSSCHHHHHHHHHH
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHh-----------cCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 358999999999999999999999999999999999999983 347999999999999999999999997
Q ss_pred cC---CCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SS---VFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~---~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.. ..+.+|||++|+........ .+|+++||.||++.+
T Consensus 79 ~~~~~~~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~ 118 (140)
T 3c97_A 79 YERTHNTKRASIIAITADTIDDDRP---GAELDEYVSKPLNPN 118 (140)
T ss_dssp HHHHHTCCCCCCEEEESSCCSCCCC---CSSCSEEEESSCCHH
T ss_pred hhhhcCCCceEEEEEeCccchhHHH---hCChhheEeCCCCHH
Confidence 42 24678999999876554332 789999999999754
No 98
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.77 E-value=9.5e-20 Score=146.88 Aligned_cols=106 Identities=24% Similarity=0.314 Sum_probs=96.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC-CEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISS-CKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g-~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
++||||||++..+..+..+|+..| |.+ ..+.++.+|++.+. ...||+||+|+.||+++|+++++.||
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~-----------~~~~dlvllD~~lp~~~g~~~~~~lr 70 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVP-----------AARPDVAVLDVRLPDGNGIELCRDLL 70 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHH-----------HHCCSEEEECSEETTEEHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-----------hcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 589999999999999999999887 874 57999999999984 34699999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+. .+.+|||++|+..+.....++++.|+++||.||++.+
T Consensus 71 ~~--~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~ 109 (225)
T 3c3w_A 71 SR--MPDLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGM 109 (225)
T ss_dssp HH--CTTCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred Hh--CCCCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHH
Confidence 87 5789999999999999999999999999999998653
No 99
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.77 E-value=4.9e-19 Score=146.25 Aligned_cols=101 Identities=21% Similarity=0.330 Sum_probs=86.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhh-cCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 94 LHVLAVDDSYVDRKLIERLLQI-SSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~-~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
.+||||||++.++..+...|.. .|+.+.. .++.+++..+ ....||+||+|+.||++||+++++.+|+
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~-~~~~~~~~~~-----------~~~~~dlvllD~~mP~~~G~~~~~~lr~ 72 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDA-FDTLEGARHC-----------QGDEYVVALVDLTLPDAPSGEAVKVLLE 72 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEE-ESSTGGGTTC-----------CTTTEEEEEEESCBTTBTTSHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEE-eChHHHHHHh-----------hcCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence 5899999999999999999976 4777754 4555555544 4457999999999999999999999997
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVK 210 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~ 210 (213)
. .+|||++|+..+.+...+++++|+++||.||+.
T Consensus 73 ~----~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~ 106 (259)
T 3luf_A 73 R----GLPVVILTADISEDKREAWLEAGVLDYVMKDSR 106 (259)
T ss_dssp T----TCCEEEEECC-CHHHHHHHHHTTCCEEEECSSH
T ss_pred C----CCCEEEEEccCCHHHHHHHHHCCCcEEEeCCch
Confidence 4 589999999999999999999999999999964
No 100
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.77 E-value=9.9e-20 Score=146.54 Aligned_cols=108 Identities=11% Similarity=0.081 Sum_probs=93.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhh-cCCEEEE-EcCHHHHHHH-hhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQI-SSCKVTA-VESGTRALQY-LGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~-~g~~v~~-a~~g~eal~~-l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
...+||||||++..+..++.+|+. .|+.+.. +.++.+++.. + ....||+||+|+.||+++|+++++
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~-----------~~~~~dlvllD~~mp~~~G~~~~~ 74 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKP-----------ESRSIQMLVIDYSRISDDVLTDYS 74 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCS-----------GGGGCCEEEEEGGGCCHHHHHHHH
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHh-----------hccCCCEEEEeCCCCCCCHHHHHH
Confidence 357999999999999999999994 6888754 4566666653 4 445799999999999999999999
Q ss_pred HHHh-cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 169 KIKE-SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 169 ~ir~-~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.||+ . .+.+|||++|+..+......++++|+++||.||++.+
T Consensus 75 ~lr~~~--~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~ 117 (225)
T 3klo_A 75 SFKHIS--CPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMD 117 (225)
T ss_dssp HHHHHH--CTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHH
T ss_pred HHHHhh--CCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHH
Confidence 9998 5 5789999999999888899999999999999999764
No 101
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.77 E-value=3.8e-19 Score=155.48 Aligned_cols=108 Identities=24% Similarity=0.327 Sum_probs=93.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh-cCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQI-SSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~-~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
..+||||||++.++..+..+|+. .|+.|..+.+|.+|++.++. ...||+||+|+.||+|||+++++.+|
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~----------~~~~DlvllDi~mP~~dG~ell~~l~ 72 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILES----------CGHVDIAICDLQMSGMDGLAFLRHAS 72 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHH----------HSCEEEEEECSSCSSSCHHHHHHHHH
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhh----------CCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 36899999999999999999998 57899999999999999842 13799999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCH-----HHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVL-----TQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~-----~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+. .+..+||++|+.... ....+++..|+++||.||++.+
T Consensus 73 ~~--~~~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~ 116 (400)
T 3sy8_A 73 LS--GKVHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLE 116 (400)
T ss_dssp HH--TCEEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHH
T ss_pred hc--CCCceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHH
Confidence 87 456777777777765 5677889999999999999854
No 102
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.76 E-value=3.6e-18 Score=136.48 Aligned_cols=103 Identities=24% Similarity=0.346 Sum_probs=95.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.+||||||++..+..+..+|+..| .+..+.++.+|++.+ ..||+||+|+.||+++|+++++.||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~-------------~~~dlvllD~~lp~~~g~~~~~~lr~~ 68 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE-------------EAFHVVVLDVMLPDYSGYEICRMIKET 68 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC-------------SCCSEEEEESBCSSSBHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc-------------CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 589999999999999999999989 899999999999854 368999999999999999999999987
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
.+.+|||++|+..+.....+++++|+++||.||++.+
T Consensus 69 --~~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~ 105 (220)
T 1p2f_A 69 --RPETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPE 105 (220)
T ss_dssp --CTTSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHH
T ss_pred --CCCCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHH
Confidence 4789999999999999999999999999999999754
No 103
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.76 E-value=9.9e-19 Score=129.54 Aligned_cols=105 Identities=24% Similarity=0.318 Sum_probs=91.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCC-CceeEEEEeCCCCCCCHHHHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDA-LKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~-~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
....+||||||++..+..+..+|+..||.+..+.++.+|++.+ .. ..||+||+|+.||+++|+++++.
T Consensus 13 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~~dlvilD~~l~~~~g~~~~~~ 81 (138)
T 2b4a_A 13 MQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHR-----------SQLSTCDLLIVSDQLVDLSIFSLLDI 81 (138)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTG-----------GGGGSCSEEEEETTCTTSCHHHHHHH
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHH-----------HhCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 4567999999999999999999999999999999999999988 44 57999999999999999999999
Q ss_pred HHhcCCCCCCcEEEEe-cCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 170 IKESSVFREVPVVIMS-SEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 170 ir~~~~~~~~pII~lt-~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
||+. .+.+|||++| +..+... .+++ +++||.||++.+
T Consensus 82 l~~~--~~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~ 119 (138)
T 2b4a_A 82 VKEQ--TKQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAIS 119 (138)
T ss_dssp HTTS--SSCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHH
T ss_pred HHhh--CCCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHH
Confidence 9985 5789999999 8776655 5555 999999999754
No 104
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.75 E-value=1.9e-20 Score=135.54 Aligned_cols=107 Identities=33% Similarity=0.494 Sum_probs=97.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..+|||+||++..+..+...|+..||.+..+.++.++++.+ ....||++|+|+.||+++|+++++.+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 71 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAAL-----------ASKTPDVLLSDIRMPGMDGLALLKQIKQ 71 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHS-----------SSCCCSCEEECSCSSHHHHCSTHHHHHH
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHH-----------hcCCCCEEEEeeecCCCCHHHHHHHHHh
Confidence 35799999999999999999999999999999999999988 4557999999999999999999999998
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
. .+.+|+|++|+..+.....++++.|+++|+.||++.+
T Consensus 72 ~--~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~ 109 (124)
T 1dc7_A 72 R--HPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDID 109 (124)
T ss_dssp H--CTTSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHH
T ss_pred h--CCCCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHH
Confidence 6 5789999999998888888999999999999999754
No 105
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.75 E-value=1.1e-17 Score=134.00 Aligned_cols=102 Identities=22% Similarity=0.346 Sum_probs=94.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
++||||||++..+..+..+|+..||.|..+.++.+|++.+ ....||+|| ||+++|+++++.||+.
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~dlvi----lp~~~g~~~~~~lr~~ 65 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLM-----------DIRNYDLVM----VSDKNALSFVSRIKEK 65 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHH-----------TTSCCSEEE----ECCTTHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHH-----------hcCCCCEEE----eCCCCHHHHHHHHHhC
Confidence 3799999999999999999999999999999999999998 556799999 8999999999999986
Q ss_pred CCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCC-CCC
Q 048660 174 SVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV-KLS 212 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~-~~~ 212 (213)
...+|||++|+..+......++++|+++||.||+ +.+
T Consensus 66 --~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~ 103 (223)
T 2hqr_A 66 --HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIK 103 (223)
T ss_dssp --CTTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTH
T ss_pred --CCCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHH
Confidence 3389999999999999999999999999999999 764
No 106
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.75 E-value=1.8e-18 Score=136.04 Aligned_cols=103 Identities=14% Similarity=0.156 Sum_probs=92.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
...+||||||++..+..+..+|...||.+..+.++.+|+ ...||+||+|+.||+++|+ +++.++
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al---------------~~~~dlvl~D~~mp~~~g~-l~~~~~ 74 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF---------------DVPVDVVFTSIFQNRHHDE-IAALLA 74 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC---------------SSCCSEEEEECCSSTHHHH-HHHHHH
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC---------------CCCCCEEEEeCCCCccchH-HHHHHh
Confidence 357999999999999999999999999999888876644 1369999999999999998 899888
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+. .+.+|||++|+..+.+...++++.|+++||.||++.+
T Consensus 75 ~~--~~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~ 113 (196)
T 1qo0_D 75 AG--TPRTTLVALVEYESPAVLSQIIELECHGVITQPLDAH 113 (196)
T ss_dssp HS--CTTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGG
T ss_pred cc--CCCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHH
Confidence 75 2789999999999999999999999999999999865
No 107
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.72 E-value=3.7e-17 Score=140.81 Aligned_cols=104 Identities=26% Similarity=0.396 Sum_probs=93.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc-CCE-EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQIS-SCK-VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~-g~~-v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
..+||||||++..+..+..+|+.. ||. +..+.++.+|++.+. ...||+|++|+.||+++|+++++.|
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~-----------~~~pDlVllDi~mp~~dGlell~~l 71 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIK-----------KFNPDVLTLDVEMPRMDGLDFLEKL 71 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-----------HHCCSEEEEECCCSSSCHHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHh-----------ccCCCEEEEECCCCCCCHHHHHHHH
Confidence 468999999999999999999986 888 569999999999984 3469999999999999999999999
Q ss_pred HhcCCCCCCcEEEEecCCCH--HHHHHHHHcCCCeeeeCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVL--TQIDSCLEEGAEEYIVKPVK 210 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~--~~~~~~~~~G~~~~L~KP~~ 210 (213)
++. .+ +|||++|+..+. +...++++.|+++||.||++
T Consensus 72 ~~~--~p-~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~ 110 (349)
T 1a2o_A 72 MRL--RP-MPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQL 110 (349)
T ss_dssp HHS--SC-CCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred Hhc--CC-CcEEEEECCCcccHHHHHHHHhCCceEEEECCCC
Confidence 986 34 999999998765 44788999999999999997
No 108
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.68 E-value=3.2e-17 Score=153.94 Aligned_cols=105 Identities=19% Similarity=0.268 Sum_probs=96.7
Q ss_pred EEEEEeCCH-HH-------HHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCC-ceeEEEEeCCCCC----C
Q 048660 95 HVLAVDDSY-VD-------RKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDAL-KVNLIITDYTMPG----M 161 (213)
Q Consensus 95 ~ILvVdD~~-~~-------~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~-~~dlil~D~~mp~----~ 161 (213)
+||||||+. .. ++.|+..|++.||.|..+.++++|+..+ ... .||+||+|++||+ +
T Consensus 2 ~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~-----------~~~~~~d~vilDi~lp~~~~~~ 70 (755)
T 2vyc_A 2 KVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAIL-----------SSNEAIDCLMFSYQMEHPDEHQ 70 (755)
T ss_dssp EEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------TTTCCCSEEEEECCCCSHHHHH
T ss_pred eEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHH-----------hcCCCCcEEEEeCCCCcccccc
Confidence 799999999 88 9999999999999999999999999998 433 5999999999999 9
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEecCCC-HHHHHHHHHcCCCeeeeCCCCCC
Q 048660 162 TGYELLKKIKESSVFREVPVVIMSSEDV-LTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~lt~~~~-~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+|++++++||+. ...+||+++|+... .++....+..|+|||+.||++..
T Consensus 71 ~G~~ll~~iR~~--~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~ 120 (755)
T 2vyc_A 71 NVRQLIGKLHER--QQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTA 120 (755)
T ss_dssp HHHHHHHHHHHH--STTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCH
T ss_pred cHHHHHHHHHHh--CCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCH
Confidence 999999999987 46899999999877 77888899999999999999865
No 109
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.25 E-value=8e-11 Score=103.81 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=91.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
...+|++|||+..++..+...|.. .+.+....++.+++.. ....||++++|+.||+|+|+++++.+|
T Consensus 151 ~~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~~------------~~~~~dlil~D~~mp~~dG~~~~~~ir 217 (459)
T 1w25_A 151 LGGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKIS------------AGGPVDLVIVNAAAKNFDGLRFTAALR 217 (459)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHHH------------HHSSCSEEEEETTCSSSCHHHHHHHHH
T ss_pred CCCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhhh------------ccCCCCEEEEecCCCCCcHHHHHHHHH
Confidence 356899999999998888888865 4667778888887632 123689999999999999999999999
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCC
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKL 211 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~ 211 (213)
+......+|++++|+.........+++.|+++|+.||++.
T Consensus 218 ~~~~~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~ 257 (459)
T 1w25_A 218 SEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDP 257 (459)
T ss_dssp TSGGGTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCH
T ss_pred hCccccCCcEEEEcCCCchHHHHHHHhccccccccCCCCH
Confidence 8765678999999999999999999999999999999874
No 110
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=99.17 E-value=7.6e-12 Score=100.17 Aligned_cols=78 Identities=23% Similarity=0.419 Sum_probs=65.4
Q ss_pred CEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHH
Q 048660 118 CKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCL 197 (213)
Q Consensus 118 ~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~ 197 (213)
+.|..+.++.+|++.+. ...||++|+|+.||+++|+++++.||+.. +..++++++.....+...+++
T Consensus 6 ~~v~~~~~~~~a~~~~~-----------~~~~dlvl~D~~~p~~~g~~~~~~l~~~~--~~~~i~vi~~~~~~~~~~~~~ 72 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYK-----------ELKPDIVTMDITMPEMNGIDAIKEIMKID--PNAKIIVCSAMGQQAMVIEAI 72 (237)
T ss_dssp EEEECCCSSSTTHHHHH-----------HHCCSCEEEECCSTTSSHHHHHHHHHHHS--SSCCEEEECCSSTHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCHHHHHHHHHHhC--CCCCEEEEECCCCHHHHHHHH
Confidence 45566889999999884 34689999999999999999999999863 445666666666688899999
Q ss_pred HcCCCeeeeCC
Q 048660 198 EEGAEEYIVKP 208 (213)
Q Consensus 198 ~~G~~~~L~KP 208 (213)
+.|+++|+.||
T Consensus 73 ~~Ga~~~l~kp 83 (237)
T 3cwo_X 73 KAGAKDFIVNT 83 (237)
T ss_dssp HTTCCEEEESH
T ss_pred HCCHHheEeCC
Confidence 99999999998
No 111
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=97.37 E-value=8.6e-05 Score=69.20 Aligned_cols=90 Identities=10% Similarity=0.097 Sum_probs=68.4
Q ss_pred HHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEe
Q 048660 106 RKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMS 185 (213)
Q Consensus 106 ~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt 185 (213)
.+.|...|++.||.|..+.++++|+..++.+ ..+++|++|+.++ +.+++++||+. ..++||++++
T Consensus 19 i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~----------~~i~avIld~d~~---~~~ll~~Ir~~--~~~iPVFl~~ 83 (715)
T 3n75_A 19 IRELHRALERLNFQIVYPNDRDDLLKLIENN----------ARLCGVIFDWDKY---NLELCEEISKM--NENLPLYAFA 83 (715)
T ss_dssp HHHHHHHHHHTTCEEECCSSHHHHHHHHHHC----------TTEEEEEEEHHHH---HHHHHHHHHHH--CTTCEEEEEC
T ss_pred HHHHHHHHHHCCcEEEEeCCHHHHHHHHHhC----------CCceEEEEecccc---HHHHHHHHHHh--CCCCCEEEEe
Confidence 3456688889999999999999999999643 3589999999886 78999999987 6799999999
Q ss_pred cCCCHHHHHHHHHcCCCeeeeCCCC
Q 048660 186 SEDVLTQIDSCLEEGAEEYIVKPVK 210 (213)
Q Consensus 186 ~~~~~~~~~~~~~~G~~~~L~KP~~ 210 (213)
............-.++++|+.+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (715)
T 3n75_A 84 NTYSTLDVSLNDLRLQISFFEYALG 108 (715)
T ss_dssp CTTCCCCGGGTTSCCEEEEECCCTT
T ss_pred cCCcccccchhhhhccCeEEEeCCC
Confidence 8754332221123456777766543
No 112
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.36 E-value=0.00026 Score=57.31 Aligned_cols=53 Identities=19% Similarity=0.092 Sum_probs=45.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT 162 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~ 162 (213)
.+.+||||||+...+..+...|..+|+.+..+.+ . ....||++++|+.+|...
T Consensus 10 ~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~-------~-----------~~~~~~~ii~d~~~~~~~ 62 (254)
T 2ayx_A 10 SGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG-------Q-----------EPTPEDVLITDEVVSKKW 62 (254)
T ss_dssp TTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS-------C-----------CCCTTCEEEEESSCSCCC
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC-------C-----------CCCcCcEEEEcCCCcccc
Confidence 4679999999999999999999999999988764 1 224689999999998754
No 113
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=96.59 E-value=0.0036 Score=49.03 Aligned_cols=69 Identities=9% Similarity=0.173 Sum_probs=50.7
Q ss_pred cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC-CCCCCCHHH--HHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcC
Q 048660 124 ESGTRALQYLGLDGEQSNVGFDALKVNLIITDY-TMPGMTGYE--LLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEG 200 (213)
Q Consensus 124 ~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~-~mp~~~G~e--~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G 200 (213)
.+..+.++.+... ...+++++++ .++.++|+. .+++++. ..++|+|++++....++..++++.|
T Consensus 130 ~~~~~~i~~~~~~----------~~~~vli~~~~~~g~~~g~~~~~i~~~~~---~~~~Pvia~~g~~~~~~~~~~~~~G 196 (237)
T 3cwo_X 130 ILLRDWVVEVEKR----------GAGEILLTSIDRDGTKSGYDTEMIRFVRP---LTTLPIIASGGAGKMEHFLEAFLAG 196 (237)
T ss_dssp EEHHHHHHHHHHH----------TCSEEEEEETTTTTCCSCCCHHHHHHHGG---GCCSCEEEESCCCSHHHHHHHHHHT
T ss_pred cCHHHHHHHHhhc----------CCCeEEEEecCCCCccccccHHHHHHHHH---hcCCCEEecCCCCCHHHHHHHHHcC
Confidence 3455666655422 2346889987 667777755 4555554 4589999999999999999999999
Q ss_pred CCeee
Q 048660 201 AEEYI 205 (213)
Q Consensus 201 ~~~~L 205 (213)
+++++
T Consensus 197 ~~~~~ 201 (237)
T 3cwo_X 197 ADAAL 201 (237)
T ss_dssp CSEEE
T ss_pred cHHHh
Confidence 99985
No 114
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=96.15 E-value=0.055 Score=40.81 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=73.7
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-C-C
Q 048660 92 KELHVLAV----DDSYVDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-M-T 162 (213)
Q Consensus 92 ~~~~ILvV----dD~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~-~ 162 (213)
.+.+|++. |-+..-...+..+|+..||+|... ...++.++.+ ....+|+|.+-..+.. + .
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa-----------~~~~~diV~lS~~~~~~~~~ 85 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAA-----------VQEDVDVIGVSILNGAHLHL 85 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHH-----------HHTTCSEEEEEESSSCHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HhcCCCEEEEEeechhhHHH
Confidence 35688888 778888899999999999999853 4677777777 4457899999887754 2 2
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
-.++++.||+.. .++++|+ +.+.....+...+.+.|+|.++.
T Consensus 86 ~~~~i~~L~~~g-~~~i~v~-vGG~~~~~~~~~l~~~G~d~v~~ 127 (161)
T 2yxb_A 86 MKRLMAKLRELG-ADDIPVV-LGGTIPIPDLEPLRSLGIREIFL 127 (161)
T ss_dssp HHHHHHHHHHTT-CTTSCEE-EEECCCHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHhcC-CCCCEEE-EeCCCchhcHHHHHHCCCcEEEC
Confidence 445777888753 2456655 56666666666678999997553
No 115
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=95.68 E-value=0.15 Score=35.41 Aligned_cols=94 Identities=18% Similarity=0.262 Sum_probs=72.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC-CCCCHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM-PGMTGYELLKKI 170 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m-p~~~G~e~~~~i 170 (213)
....||+|..|-.....++.++....|+++..... . .+..-|+|++...+ |. .|
T Consensus 11 ~~~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~-------~----------~e~~AdlIfCEYlLLPe--------~i 65 (121)
T 3q7r_A 11 GPKHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQY-------K----------QELSADLVVCEYSLLPR--------EI 65 (121)
T ss_dssp CCEEEEEECSCHHHHHHHHHHSCTTTEEEEEESSC-------C----------CCTTEEEEEEEGGGSCT--------TC
T ss_pred CCcEEEEEecCchhhHHHHHhcCCcceeEEecccc-------C----------CcccceeEEEeeecChH--------Hh
Confidence 35689999999999999999998888998876542 0 34467999999866 43 23
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKL 211 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~ 211 (213)
.........-+|++=..-+.+...+.+..|+. ||..|++.
T Consensus 66 fS~k~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~ 105 (121)
T 3q7r_A 66 RSPKSLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITP 105 (121)
T ss_dssp CCCTTCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCH
T ss_pred cCCCCCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcH
Confidence 43333455667777777788899999999998 99999874
No 116
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=95.03 E-value=0.19 Score=36.62 Aligned_cols=100 Identities=10% Similarity=0.058 Sum_probs=67.1
Q ss_pred cEEEEE----eCCHHHHHHHHHHHhhcCCEEE---EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CC-HH
Q 048660 94 LHVLAV----DDSYVDRKLIERLLQISSCKVT---AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MT-GY 164 (213)
Q Consensus 94 ~~ILvV----dD~~~~~~~l~~~L~~~g~~v~---~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~-G~ 164 (213)
.+|++. |-+..-...+..+|+..||+|. .....++.++.+. +..+|+|.+...+.. +. ..
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~-----------~~~~d~v~lS~~~~~~~~~~~ 72 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAI-----------ETKADAILVSSLYGQGEIDCK 72 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHH-----------HHTCSEEEEEECSSTHHHHHT
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH-----------hcCCCEEEEEecCcCcHHHHH
Confidence 355555 4566667788899999999887 4567888888773 347899999887754 22 33
Q ss_pred HHHHHHHhcCCCCCCcEEEEecCC-----CH-HHHHHHHHcCCCeeee
Q 048660 165 ELLKKIKESSVFREVPVVIMSSED-----VL-TQIDSCLEEGAEEYIV 206 (213)
Q Consensus 165 e~~~~ir~~~~~~~~pII~lt~~~-----~~-~~~~~~~~~G~~~~L~ 206 (213)
++++.+++.. .++++|+ +.+.. +. .....+.+.|++.|..
T Consensus 73 ~~i~~l~~~g-~~~i~v~-vGG~~~~~~~~~~~~~~~~~~~G~d~~~~ 118 (137)
T 1ccw_A 73 GLRQKCDEAG-LEGILLY-VGGNIVVGKQHWPDVEKRFKDMGYDRVYA 118 (137)
T ss_dssp THHHHHHHTT-CTTCEEE-EEESCSSSSCCHHHHHHHHHHTTCSEECC
T ss_pred HHHHHHHhcC-CCCCEEE-EECCCcCchHhhhhhHHHHHHCCCCEEEC
Confidence 4677888753 2356654 45532 11 1245688999988864
No 117
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=95.01 E-value=0.2 Score=40.76 Aligned_cols=82 Identities=16% Similarity=0.114 Sum_probs=58.8
Q ss_pred HHHHHhhcCCEEE--EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-----CCHHHHHHHHHhcCCCCCCcE
Q 048660 109 IERLLQISSCKVT--AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-----MTGYELLKKIKESSVFREVPV 181 (213)
Q Consensus 109 l~~~L~~~g~~v~--~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-----~~G~e~~~~ir~~~~~~~~pI 181 (213)
..+.|.+.|+.|. ++.|...|-.... ..+++| +.+..|. ...+++++.|++. .++||
T Consensus 127 aa~~L~~~Gf~Vlpy~~dd~~~akrl~~------------~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~---~~vPV 190 (265)
T 1wv2_A 127 AAEQLVKDGFDVMVYTSDDPIIARQLAE------------IGCIAV-MPLAGLIGSGLGICNPYNLRIILEE---AKVPV 190 (265)
T ss_dssp HHHHHHTTTCEEEEEECSCHHHHHHHHH------------SCCSEE-EECSSSTTCCCCCSCHHHHHHHHHH---CSSCB
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHH------------hCCCEE-EeCCccCCCCCCcCCHHHHHHHHhc---CCCCE
Confidence 4445667899877 5666666555432 245655 6655542 2247889999984 57999
Q ss_pred EEEecCCCHHHHHHHHHcCCCeeee
Q 048660 182 VIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 182 I~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
|+=.+-..+++...+++.|+++++.
T Consensus 191 I~eGGI~TPsDAa~AmeLGAdgVlV 215 (265)
T 1wv2_A 191 LVDAGVGTASDAAIAMELGCEAVLM 215 (265)
T ss_dssp EEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred EEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 9877888999999999999999874
No 118
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=94.20 E-value=0.27 Score=38.27 Aligned_cols=99 Identities=11% Similarity=0.113 Sum_probs=67.4
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CC-H
Q 048660 93 ELHVLAV----DDSYVDRKLIERLLQISSCKVTAVE---SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MT-G 163 (213)
Q Consensus 93 ~~~ILvV----dD~~~~~~~l~~~L~~~g~~v~~a~---~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~-G 163 (213)
..+||+. |-+..-...+..+|+..||.|.... ..++.++.+ ....||+|.+-..+.. +. -
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~-----------~~~~~d~v~lS~~~~~~~~~~ 156 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAV-----------KKYQPDIVGMSALLTTTMMNM 156 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHH-----------HHHCCSEEEEECCSGGGTHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEeccccccHHHH
Confidence 4578888 6677888899999999999998643 456666666 3347899999987754 33 3
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
.++++.+|+....+++||++--...+.+. +.+.|+|.|-
T Consensus 157 ~~~i~~l~~~~~~~~~~v~vGG~~~~~~~---~~~~gad~~~ 195 (210)
T 1y80_A 157 KSTIDALIAAGLRDRVKVIVGGAPLSQDF---ADEIGADGYA 195 (210)
T ss_dssp HHHHHHHHHTTCGGGCEEEEESTTCCHHH---HHHHTCSEEC
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHH---HHHcCCeEEE
Confidence 45778888753334677665544444332 3567998764
No 119
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=93.93 E-value=0.28 Score=38.70 Aligned_cols=99 Identities=12% Similarity=0.116 Sum_probs=68.2
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEE--eCCCCC-CC
Q 048660 93 ELHVLAV----DDSYVDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIIT--DYTMPG-MT 162 (213)
Q Consensus 93 ~~~ILvV----dD~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~--D~~mp~-~~ 162 (213)
..+||+. |-+..-..++..+|+..||+|... ...++.++.+ .+.++|+|.+ ...|.. +.
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~-----------~~~~~d~v~l~~S~l~~~~~~ 160 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEA-----------AKHKGEKVLLVGSALMTTSML 160 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHH-----------HHTTTSCEEEEEECSSHHHHT
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHH-----------HHcCCCEEEEEchhcccCcHH
Confidence 4578877 667788888999999999998754 3566777777 4457899999 877743 33
Q ss_pred -HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 163 -GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 163 -G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
-.++++.+++.....++||++=.+..+.+ -+.+.|+|.|-
T Consensus 161 ~~~~~i~~l~~~~~~~~v~v~vGG~~~~~~---~a~~iGad~~~ 201 (215)
T 3ezx_A 161 GQKDLMDRLNEEKLRDSVKCMFGGAPVSDK---WIEEIGADATA 201 (215)
T ss_dssp HHHHHHHHHHHTTCGGGSEEEEESSSCCHH---HHHHHTCCBCC
T ss_pred HHHHHHHHHHHcCCCCCCEEEEECCCCCHH---HHHHhCCeEEE
Confidence 45578888876422367766544444433 34567998874
No 120
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=92.68 E-value=0.92 Score=36.57 Aligned_cols=98 Identities=13% Similarity=0.075 Sum_probs=66.6
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CC-
Q 048660 92 KELHVLAV----DDSYVDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MT- 162 (213)
Q Consensus 92 ~~~~ILvV----dD~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~- 162 (213)
...+||+. |-+..-..++..+|+..||.|... ...++.++.+ ....+|+|.+-..+.. +.
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~-----------~~~~~d~V~lS~l~~~~~~~ 190 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAV-----------QKEKPIMLTGTALMTTTMYA 190 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHH-----------HHHCCSEEEEECCCTTTTTH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEEeeccCCHHH
Confidence 35678888 667788889999999999988532 4566666666 3347899999987754 44
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
-.++++.+|+. ...+||++--.....+ . +...|++.|-
T Consensus 191 ~~~~i~~l~~~--~~~~~v~vGG~~~~~~-~--~~~igad~~~ 228 (258)
T 2i2x_B 191 FKEVNDMLLEN--GIKIPFACGGGAVNQD-F--VSQFALGVYG 228 (258)
T ss_dssp HHHHHHHHHTT--TCCCCEEEESTTCCHH-H--HHTSTTEEEC
T ss_pred HHHHHHHHHhc--CCCCcEEEECccCCHH-H--HHHcCCeEEE
Confidence 44578888876 3457766544444433 2 3367887664
No 121
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=92.57 E-value=0.84 Score=36.23 Aligned_cols=84 Identities=10% Similarity=0.117 Sum_probs=58.8
Q ss_pred HHHHHHHhhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC------CCCCCHHHHHHHHHhcCCCCCC
Q 048660 107 KLIERLLQISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT------MPGMTGYELLKKIKESSVFREV 179 (213)
Q Consensus 107 ~~l~~~L~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~------mp~~~G~e~~~~ir~~~~~~~~ 179 (213)
..+.+.+++.|..+. .+.+.+++....+ ..+|+|.+... .+...++++++++++. ++
T Consensus 119 ~~~i~~~~~~g~~v~~~v~t~eea~~a~~------------~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~----~i 182 (229)
T 3q58_A 119 DSLLTRIRLHGLLAMADCSTVNEGISCHQ------------KGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA----GC 182 (229)
T ss_dssp HHHHHHHHHTTCEEEEECSSHHHHHHHHH------------TTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT----TC
T ss_pred HHHHHHHHHCCCEEEEecCCHHHHHHHHh------------CCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc----CC
Confidence 334444456677654 5678888877653 24666753221 2234578899999863 78
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 180 PVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 180 pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
|+|+-.+-.+.++..+++++|+++++.
T Consensus 183 pvIA~GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 183 RVIAEGRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp CEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 999999998999999999999999864
No 122
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=92.31 E-value=0.22 Score=40.55 Aligned_cols=81 Identities=17% Similarity=0.130 Sum_probs=55.3
Q ss_pred HHHhhcCCEEE--EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-----HHHHHHHHhcCCCCC-CcEE
Q 048660 111 RLLQISSCKVT--AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-----YELLKKIKESSVFRE-VPVV 182 (213)
Q Consensus 111 ~~L~~~g~~v~--~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-----~e~~~~ir~~~~~~~-~pII 182 (213)
+.|.+.||.|. +..|...|-.... ..++.| +.+..|-.+| .++++.+++. ..+ +|||
T Consensus 118 ~~L~k~Gf~Vlpy~~~D~~~ak~l~~------------~G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~--~~~~vPVI 182 (268)
T 2htm_A 118 ERLIEEDFLVLPYMGPDLVLAKRLAA------------LGTATV-MPLAAPIGSGWGVRTRALLELFARE--KASLPPVV 182 (268)
T ss_dssp HHHHHTTCEECCEECSCHHHHHHHHH------------HTCSCB-EEBSSSTTTCCCSTTHHHHHHHHHT--TTTSSCBE
T ss_pred HHHHHCCCEEeeccCCCHHHHHHHHh------------cCCCEE-EecCccCcCCcccCCHHHHHHHHHh--cCCCCeEE
Confidence 34556799876 5566644443331 134555 7766554333 5668888873 245 8999
Q ss_pred EEecCCCHHHHHHHHHcCCCeeee
Q 048660 183 IMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 183 ~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+=.+-...++...+++.|+++.+.
T Consensus 183 ~~GGI~tpsDAa~AmeLGAdgVlV 206 (268)
T 2htm_A 183 VDAGLGLPSHAAEVMELGLDAVLV 206 (268)
T ss_dssp EESCCCSHHHHHHHHHTTCCEEEE
T ss_pred EeCCCCCHHHHHHHHHcCCCEEEE
Confidence 888888999999999999999864
No 123
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=91.33 E-value=1.4 Score=34.92 Aligned_cols=84 Identities=14% Similarity=0.117 Sum_probs=58.3
Q ss_pred HHHHHHHhhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC------CCCCCHHHHHHHHHhcCCCCCC
Q 048660 107 KLIERLLQISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT------MPGMTGYELLKKIKESSVFREV 179 (213)
Q Consensus 107 ~~l~~~L~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~------mp~~~G~e~~~~ir~~~~~~~~ 179 (213)
..+...+++.|..+. .+.+.+++....+ ...|+|.+... .....++++++++++. ++
T Consensus 119 ~~~i~~~~~~g~~v~~~v~t~eea~~a~~------------~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~----~i 182 (232)
T 3igs_A 119 EALLARIHHHHLLTMADCSSVDDGLACQR------------LGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA----GC 182 (232)
T ss_dssp HHHHHHHHHTTCEEEEECCSHHHHHHHHH------------TTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT----TC
T ss_pred HHHHHHHHHCCCEEEEeCCCHHHHHHHHh------------CCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc----CC
Confidence 334444456677654 5677778776653 24566653211 1233568899999863 78
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 180 PVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 180 pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
|+|+-.+-.+.++..+++++|+++++.
T Consensus 183 pvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 183 RVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp CEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred cEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 999999988999999999999999864
No 124
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=89.69 E-value=2.7 Score=39.21 Aligned_cols=103 Identities=14% Similarity=0.063 Sum_probs=71.8
Q ss_pred CCccEEEEE----eCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-C-
Q 048660 91 SKELHVLAV----DDSYVDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-M- 161 (213)
Q Consensus 91 ~~~~~ILvV----dD~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~- 161 (213)
..+.+|++. |.+..-...+..+|+..||+|... ...++.++.+ .+..+|+|.+...|.. +
T Consensus 602 g~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA-----------~e~~adiVglSsl~~~~~~ 670 (762)
T 2xij_A 602 GRRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQA-----------VDADVHAVGVSTLAAGHKT 670 (762)
T ss_dssp SSCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH-----------HHTTCSEEEEEECSSCHHH
T ss_pred CCCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHH-----------HHcCCCEEEEeeecHHHHH
Confidence 456788887 556666777888999999999864 3567777777 3446899988877654 2
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 162 TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
...++++.|++.+ ..+++ |++.+.....+...+.+.|+++|..
T Consensus 671 ~~~~vi~~Lr~~G-~~dv~-VivGG~~P~~d~~~l~~~GaD~~f~ 713 (762)
T 2xij_A 671 LVPELIKELNSLG-RPDIL-VMCGGVIPPQDYEFLFEVGVSNVFG 713 (762)
T ss_dssp HHHHHHHHHHHTT-CTTSE-EEEEESCCGGGHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHHhcC-CCCCE-EEEeCCCCcccHHHHHhCCCCEEeC
Confidence 3566788888864 23444 4455534444566788999999876
No 125
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=89.28 E-value=2.1 Score=39.83 Aligned_cols=103 Identities=13% Similarity=0.094 Sum_probs=72.4
Q ss_pred CCccEEEEE----eCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-C-
Q 048660 91 SKELHVLAV----DDSYVDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-M- 161 (213)
Q Consensus 91 ~~~~~ILvV----dD~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~- 161 (213)
..+.+|++. |.+..-...+..+|+..||+|... ...++.++.+ .+..+|+|.+...|.. +
T Consensus 594 g~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA-----------~e~~adiVglSsl~~~~~~ 662 (727)
T 1req_A 594 GRRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQA-----------VEADVHVVGVSSLAGGHLT 662 (727)
T ss_dssp SSCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHH-----------HHTTCSEEEEEECSSCHHH
T ss_pred CCCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH-----------HHcCCCEEEEeeecHhHHH
Confidence 456788887 556667777888999999999764 3567777777 3447899998877654 2
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 162 TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
...++++.|++.+ ..+++ |++.+..-..+...+.+.|+++|..
T Consensus 663 ~~~~vi~~L~~~G-~~~i~-VivGG~~p~~d~~~l~~~GaD~~f~ 705 (727)
T 1req_A 663 LVPALRKELDKLG-RPDIL-ITVGGVIPEQDFDELRKDGAVEIYT 705 (727)
T ss_dssp HHHHHHHHHHHTT-CTTSE-EEEEESCCGGGHHHHHHTTEEEEEC
T ss_pred HHHHHHHHHHhcC-CCCCE-EEEcCCCccccHHHHHhCCCCEEEc
Confidence 3566888888864 23444 4455544455567788999999875
No 126
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=88.58 E-value=4 Score=33.16 Aligned_cols=98 Identities=11% Similarity=-0.003 Sum_probs=61.9
Q ss_pred EEEEEeC--CHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC---CCCCCHHHHHH
Q 048660 95 HVLAVDD--SYVDRKLIERLLQISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT---MPGMTGYELLK 168 (213)
Q Consensus 95 ~ILvVdD--~~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~---mp~~~G~e~~~ 168 (213)
.|++... +......+....+++|..+. .+.+.+++...+.. ..|+|-+.-. ... -+++.+.
T Consensus 138 ~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~------------Gad~IGv~~r~l~~~~-~dl~~~~ 204 (272)
T 3qja_A 138 MLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKA------------GAKVIGVNARDLMTLD-VDRDCFA 204 (272)
T ss_dssp EEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH------------TCSEEEEESBCTTTCC-BCTTHHH
T ss_pred EEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC------------CCCEEEECCCcccccc-cCHHHHH
Confidence 4665432 22223334445566788654 56788776655531 3566655421 111 2356677
Q ss_pred HHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 169 KIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+.+.- ..++|+|+-++-.+.++..++.++|+++++.
T Consensus 205 ~l~~~v-~~~~pvVaegGI~t~edv~~l~~~GadgvlV 241 (272)
T 3qja_A 205 RIAPGL-PSSVIRIAESGVRGTADLLAYAGAGADAVLV 241 (272)
T ss_dssp HHGGGS-CTTSEEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHhC-cccCEEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 777642 2378999999988899999999999999875
No 127
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=88.20 E-value=10 Score=32.57 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=66.1
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHhhcCCEEE--EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC---------
Q 048660 93 ELHVLAVD----DSYVDRKLIERLLQISSCKVT--AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT--------- 157 (213)
Q Consensus 93 ~~~ILvVd----D~~~~~~~l~~~L~~~g~~v~--~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~--------- 157 (213)
+..++++| +.....+.++.+-+..+..|. .+.+.++|....+ ...|.|.+...
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~------------aGAD~I~vG~g~Gs~~~tr~ 223 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE------------NGADGIKVGIGPGSICTTRI 223 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHH------------TTCSEEEECC---------C
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHH------------cCCCEEEEeCCCCcCccccc
Confidence 35677764 233445566665555576655 5788888887763 24577776321
Q ss_pred --CCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 158 --MPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 158 --mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
-.+...++++..+.+.....++|||+-.+-.+..+..+++.+|++...
T Consensus 224 ~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~ 273 (400)
T 3ffs_A 224 VAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVM 273 (400)
T ss_dssp CSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEE
T ss_pred ccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEE
Confidence 011245667777765322347999998888889999999999999864
No 128
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=87.23 E-value=2.3 Score=34.49 Aligned_cols=100 Identities=10% Similarity=0.123 Sum_probs=65.2
Q ss_pred ccEEEEE----eCCHHHHHHHHHH--------Hhhc-CCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 93 ELHVLAV----DDSYVDRKLIERL--------LQIS-SCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 93 ~~~ILvV----dD~~~~~~~l~~~--------L~~~-g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
..+|++. |-+..-...+..+ |+.. ||+|+-. ...++.++.+ .+..+|+|.+..
T Consensus 120 ~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa-----------~e~~~d~VglS~ 188 (262)
T 1xrs_B 120 KIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKA-----------VELEADVLLVSQ 188 (262)
T ss_dssp CEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHH-----------HHTTCSEEEEEC
T ss_pred CCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEEe
Confidence 4577665 5566666667777 9999 9998753 4567777776 445799999999
Q ss_pred CCCC----CCH-HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 157 TMPG----MTG-YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 157 ~mp~----~~G-~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+.. +.. .++++.+++.....+++|+ +.+.... ...+.+.|++.|..
T Consensus 189 l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vi-vGG~~~~--~~~a~~iGad~~~~ 240 (262)
T 1xrs_B 189 TVTQKNVHIQNMTHLIELLEAEGLRDRFVLL-CGGPRIN--NEIAKELGYDAGFG 240 (262)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHTTCGGGSEEE-EECTTCC--HHHHHTTTCSEEEC
T ss_pred ecCCccchHHHHHHHHHHHHhcCCCCCCEEE-EECCcCC--HHHHHHcCCeEEEC
Confidence 8875 222 3467777765323346654 4444332 33467889988754
No 129
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=85.19 E-value=13 Score=30.29 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=67.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
..+.|-+.--++.....+..+|...-|.+..+.++.+.++.++. ...++|++++... +..-..+...++
T Consensus 8 ~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~---------~~e~iDcLvle~~--~~~~~~~~~~L~ 76 (289)
T 1r8j_A 8 SQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQT---------HRDQIDCLILVAA--NPSFRAVVQQLC 76 (289)
T ss_dssp CCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHH---------STTSCSEEEEETT--STTHHHHHHHHH
T ss_pred cceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHh---------ccccCCEEEEEeC--CCccHHHHHHHH
Confidence 45788888889999999999999888999999999999999865 4457999998752 334667888888
Q ss_pred hcCCCCCCcEEEEecC
Q 048660 172 ESSVFREVPVVIMSSE 187 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~ 187 (213)
+. .--+|+|++...
T Consensus 77 ~~--g~lLP~vil~~~ 90 (289)
T 1r8j_A 77 FE--GVVVPAIVVGDR 90 (289)
T ss_dssp HT--TCCCCEEEESCC
T ss_pred Hc--CccccEEEeccC
Confidence 76 457899988664
No 130
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=83.28 E-value=2.3 Score=35.87 Aligned_cols=59 Identities=8% Similarity=0.166 Sum_probs=47.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhh---cCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQI---SSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG 160 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~---~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~ 160 (213)
...+++.|+|.|....+.|..+|.+ ..+.+..+++.+.+.+.++ +..+|++|+|-.+..
T Consensus 19 ~~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~-----------~~~~dilli~e~~~~ 80 (373)
T 3fkq_A 19 GMKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVK-----------EYRIDVLIAEEDFNI 80 (373)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHH-----------HHTCSEEEEETTCCC
T ss_pred CceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHh-----------cCCCCEEEEcchhhh
Confidence 3468999999999999999999864 3689999999999999884 346788888876643
No 131
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=82.23 E-value=0.58 Score=38.00 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=35.6
Q ss_pred ccEEEEEeCC--HHHHHHHHHHHhhcCCEEEEEcCHHH--HHHHhhhcCCCCCCCCCCCceeEEEEe
Q 048660 93 ELHVLAVDDS--YVDRKLIERLLQISSCKVTAVESGTR--ALQYLGLDGEQSNVGFDALKVNLIITD 155 (213)
Q Consensus 93 ~~~ILvVdD~--~~~~~~l~~~L~~~g~~v~~a~~g~e--al~~l~~~~~~~~~~~~~~~~dlil~D 155 (213)
..+||+|+++ +.-...+...|+..|+.|.......- -.+.+ ..||+||++
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L-------------~~yDvIIl~ 57 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELL-------------AKQDLVILS 57 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHH-------------HTCSEEEEE
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHH-------------hcCCEEEEc
Confidence 3589999988 66778899999999999988765321 01222 268999887
No 132
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=81.73 E-value=6.7 Score=29.92 Aligned_cols=98 Identities=10% Similarity=0.053 Sum_probs=56.6
Q ss_pred EEEEEeCCH--HHHHHHHHHHhhcCCEEEEE----cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC----CCCHH
Q 048660 95 HVLAVDDSY--VDRKLIERLLQISSCKVTAV----ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP----GMTGY 164 (213)
Q Consensus 95 ~ILvVdD~~--~~~~~l~~~L~~~g~~v~~a----~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp----~~~G~ 164 (213)
..+++-+.. .....+...+++.|..+... .+..+.++.+.. ...|.|-++.... ...++
T Consensus 79 d~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~-----------~g~d~i~v~~g~~g~~~~~~~~ 147 (211)
T 3f4w_A 79 DYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEE-----------AGADMLAVHTGTDQQAAGRKPI 147 (211)
T ss_dssp SEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHH-----------HTCCEEEEECCHHHHHTTCCSH
T ss_pred CEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHH-----------cCCCEEEEcCCCcccccCCCCH
Confidence 344444433 33345556666778776642 333333333321 1356666652100 11357
Q ss_pred HHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 165 ELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 165 e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+.++++++. .+++|+++-.+- +.+...++.++|++.++.
T Consensus 148 ~~i~~l~~~--~~~~~i~~~gGI-~~~~~~~~~~~Gad~vvv 186 (211)
T 3f4w_A 148 DDLITMLKV--RRKARIAVAGGI-SSQTVKDYALLGPDVVIV 186 (211)
T ss_dssp HHHHHHHHH--CSSCEEEEESSC-CTTTHHHHHTTCCSEEEE
T ss_pred HHHHHHHHH--cCCCcEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 888888875 346888765555 478888999999998754
No 133
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=81.73 E-value=4.3 Score=32.05 Aligned_cols=56 Identities=14% Similarity=0.332 Sum_probs=40.4
Q ss_pred ceeEEEEeCCCCCCCH-------HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 148 KVNLIITDYTMPGMTG-------YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~dlil~D~~mp~~~G-------~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..|.|++....|+.+| ++-++++|+. ..+.+ |.+.+.-+.+....+.++|+|.++.
T Consensus 134 ~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~--~~~~~-I~VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 134 QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQ--FPSLD-IEVDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHH--CTTCE-EEEESSCSTTTHHHHHHHTCCEEEE
T ss_pred cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHh--cCCCC-EEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 4688887777787655 4557777765 34555 4566666788899999999998764
No 134
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=81.56 E-value=9.1 Score=30.46 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=50.0
Q ss_pred EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-------CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHH
Q 048660 122 AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-------MTGYELLKKIKESSVFREVPVVIMSSEDVLTQID 194 (213)
Q Consensus 122 ~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-------~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~ 194 (213)
.+.+.+|+.+... ...|.|.+.-..|. .-|++.++++++.. ..++|++++.+- +.+...
T Consensus 141 S~ht~~Ea~~A~~------------~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~-~~~iPvvAiGGI-~~~ni~ 206 (243)
T 3o63_A 141 STHDPDQVAAAAA------------GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELG-GDDKPWFAIGGI-NAQRLP 206 (243)
T ss_dssp EECSHHHHHHHHH------------SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC----CCCEEEESSC-CTTTHH
T ss_pred eCCCHHHHHHHhh------------CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhc-cCCCCEEEecCC-CHHHHH
Confidence 5688888777652 24788887543332 23788888888641 147999999887 577888
Q ss_pred HHHHcCCCeeee
Q 048660 195 SCLEEGAEEYIV 206 (213)
Q Consensus 195 ~~~~~G~~~~L~ 206 (213)
.++++|++++..
T Consensus 207 ~~~~aGa~gvav 218 (243)
T 3o63_A 207 AVLDAGARRIVV 218 (243)
T ss_dssp HHHHTTCCCEEE
T ss_pred HHHHcCCCEEEE
Confidence 999999998753
No 135
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=81.50 E-value=16 Score=28.02 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=49.8
Q ss_pred CCEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-------CCHHHHHHHHHhcCCCCCCcEEEEecCC
Q 048660 117 SCKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-------MTGYELLKKIKESSVFREVPVVIMSSED 188 (213)
Q Consensus 117 g~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-------~~G~e~~~~ir~~~~~~~~pII~lt~~~ 188 (213)
|..+ ..+.+..++.+... ...|.|+++-..+. ..|++.++.+++. .++|+++..+-
T Consensus 110 ~~~ig~sv~t~~~~~~a~~------------~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~---~~~pvia~GGI- 173 (221)
T 1yad_A 110 HLHIGRSVHSLEEAVQAEK------------EDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQR---ISIPVIAIGGM- 173 (221)
T ss_dssp TCEEEEEECSHHHHHHHHH------------TTCSEEEEECCC----------CHHHHHHHHHHH---CCSCEEEESSC-
T ss_pred CCEEEEEcCCHHHHHHHHh------------CCCCEEEECCccccCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-
Confidence 5443 35567777766542 24688888654322 2367888888764 27898877777
Q ss_pred CHHHHHHHHHcCCCeee
Q 048660 189 VLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 189 ~~~~~~~~~~~G~~~~L 205 (213)
+.+...+++++|++++.
T Consensus 174 ~~~nv~~~~~~Ga~gv~ 190 (221)
T 1yad_A 174 TPDRLRDVKQAGADGIA 190 (221)
T ss_dssp CGGGHHHHHHTTCSEEE
T ss_pred CHHHHHHHHHcCCCEEE
Confidence 78889999999998864
No 136
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=81.18 E-value=12 Score=26.40 Aligned_cols=94 Identities=7% Similarity=0.111 Sum_probs=55.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcC-HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVES-GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~-g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
+..|.++|.++...+.++ ..|+.+..... -.+.++.+ .-...|++++-+.-.. .-..++..+|
T Consensus 30 g~~v~vid~~~~~~~~~~----~~g~~~i~gd~~~~~~l~~a-----------~i~~ad~vi~~~~~~~-~n~~~~~~a~ 93 (140)
T 3fwz_A 30 DIPLVVIETSRTRVDELR----ERGVRAVLGNAANEEIMQLA-----------HLECAKWLILTIPNGY-EAGEIVASAR 93 (140)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEESCTTSHHHHHHT-----------TGGGCSEEEECCSCHH-HHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHH----HcCCCEEECCCCCHHHHHhc-----------CcccCCEEEEECCChH-HHHHHHHHHH
Confidence 457888888876554433 35776654432 23344443 2235788887553221 2334566677
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+. .+..+||+.+.+ .+....+.+.|++..+.
T Consensus 94 ~~--~~~~~iiar~~~--~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 94 AK--NPDIEIIARAHY--DDEVAYITERGANQVVM 124 (140)
T ss_dssp HH--CSSSEEEEEESS--HHHHHHHHHTTCSEEEE
T ss_pred HH--CCCCeEEEEECC--HHHHHHHHHCCCCEEEC
Confidence 65 456777766643 55667778899987653
No 137
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=80.61 E-value=4.3 Score=37.27 Aligned_cols=100 Identities=10% Similarity=0.105 Sum_probs=64.8
Q ss_pred ccEEEEE---eCCHHHHH-HH----HHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-
Q 048660 93 ELHVLAV---DDSYVDRK-LI----ERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG- 160 (213)
Q Consensus 93 ~~~ILvV---dD~~~~~~-~l----~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~- 160 (213)
+.+||+. .|-..+.. .+ ..+|+..||+|+-. ...++.++.+ .+..+|+|.+...|..
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA-----------~EedADVVGLSsLLTt~ 670 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAA-----------IELKADAILASTIISHD 670 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHH-----------HHTTCSEEEEECCCCGG
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEeccccCc
Confidence 5678887 24333333 22 57899999999754 4678888877 4457999999988876
Q ss_pred ---CCH-HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 161 ---MTG-YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 161 ---~~G-~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+.. -++++.+++.+....++|+ +.+..-..+ -+.+.|++.|..
T Consensus 671 dihL~~MkevIelLrE~GlrDkIkVI-VGGa~~tqd--~AkeIGADa~f~ 717 (763)
T 3kp1_A 671 DIHYKNMKRIHELAVEKGIRDKIMIG-CGGTQVTPE--VAVKQGVDAGFG 717 (763)
T ss_dssp GHHHHHHHHHHHHHHHTTCTTTSEEE-EECTTCCHH--HHHTTTCSEEEC
T ss_pred hhhHHHHHHHHHHHHhcCCCCCCEEE-EECCCCCHH--HHHHcCCcEEEC
Confidence 333 3477888876533345655 444433332 345899988764
No 138
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=80.28 E-value=4.9 Score=32.94 Aligned_cols=86 Identities=14% Similarity=0.051 Sum_probs=55.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CCHHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MTGYELLKKI 170 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~G~e~~~~i 170 (213)
..-++..||-++.....|+..++..+-..+...|+.+++..+.. ...++|+||+|=--.. .+.-.+++.|
T Consensus 112 ~~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~---------~~~~fdLVfiDPPYe~k~~~~~vl~~L 182 (283)
T 2oo3_A 112 SQDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLP---------PPEKRGLIFIDPSYERKEEYKEIPYAI 182 (283)
T ss_dssp TTSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCS---------CTTSCEEEEECCCCCSTTHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcC---------CCCCccEEEECCCCCCCcHHHHHHHHH
Confidence 44789999999999999999998654444566888888887632 2236999999952221 2344455555
Q ss_pred HhcCC-CCCCcEEEEec
Q 048660 171 KESSV-FREVPVVIMSS 186 (213)
Q Consensus 171 r~~~~-~~~~pII~lt~ 186 (213)
.+... ++.--+++.-.
T Consensus 183 ~~~~~r~~~Gi~v~WYP 199 (283)
T 2oo3_A 183 KNAYSKFSTGLYCVWYP 199 (283)
T ss_dssp HHHHHHCTTSEEEEEEE
T ss_pred HHhCccCCCeEEEEEEe
Confidence 54211 33444444444
No 139
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=79.99 E-value=10 Score=34.32 Aligned_cols=98 Identities=11% Similarity=0.208 Sum_probs=64.8
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CC-H
Q 048660 93 ELHVLAV----DDSYVDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MT-G 163 (213)
Q Consensus 93 ~~~ILvV----dD~~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~-G 163 (213)
..+||+. |-+..-..++..+|+..||.|... ...++.++.+ ....+|+|.+-..|.. +. -
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa-----------~~~~~diVgLS~l~t~~~~~m 166 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTA-----------KEVNADLIGLSGLITPSLDEM 166 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHH-----------HHHTCSEEEEECCSTHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEEecCCCCHHHH
Confidence 4578887 567777888889999999999754 4566677766 3447899999987753 22 3
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHc-----CCCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEE-----GAEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~-----G~~~~L 205 (213)
.++++.+++. ..++||++-.+....... ..+. |+|.|-
T Consensus 167 ~~~i~~Lr~~--g~~i~ViVGGa~~~~~~a--~~~i~p~~~GAD~ya 209 (579)
T 3bul_A 167 VNVAKEMERQ--GFTIPLLIGGATTSKAHT--AVKIEQNYSGPTVYV 209 (579)
T ss_dssp HHHHHHHHHT--TCCSCEEEESTTCCHHHH--HHHTGGGCSSCEEEC
T ss_pred HHHHHHHHHc--CCCCeEEEEccccchhhh--hhhhhhcccCCeEEE
Confidence 3467788775 347887654444444322 1133 887664
No 140
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=79.54 E-value=1.5 Score=35.69 Aligned_cols=48 Identities=8% Similarity=0.324 Sum_probs=35.5
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEecCCC------HHHHHHHHHcCCCeeeeCCCCC
Q 048660 162 TGYELLKKIKESSVFREVPVVIMSSEDV------LTQIDSCLEEGAEEYIVKPVKL 211 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~lt~~~~------~~~~~~~~~~G~~~~L~KP~~~ 211 (213)
+.+++++.+|+. ..++|+++++-.+. .....++.++|+++.+.-....
T Consensus 81 ~~~~~v~~ir~~--~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ 134 (267)
T 3vnd_A 81 DCFDIITKVRAQ--HPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPV 134 (267)
T ss_dssp HHHHHHHHHHHH--CTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCG
T ss_pred HHHHHHHHHHhc--CCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCH
Confidence 347888888875 35789999976432 5578899999999988754443
No 141
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=79.06 E-value=2.3 Score=34.62 Aligned_cols=48 Identities=17% Similarity=0.365 Sum_probs=36.0
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEecC------CCHHHHHHHHHcCCCeeeeCCCCC
Q 048660 162 TGYELLKKIKESSVFREVPVVIMSSE------DVLTQIDSCLEEGAEEYIVKPVKL 211 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~lt~~------~~~~~~~~~~~~G~~~~L~KP~~~ 211 (213)
+.+++++++|+. ..++|+++++-. .-.....+|.++|+++++.--+..
T Consensus 83 ~~~~~v~~~r~~--~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ 136 (271)
T 3nav_A 83 ICFELIAQIRAR--NPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPT 136 (271)
T ss_dssp HHHHHHHHHHHH--CTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCG
T ss_pred HHHHHHHHHHhc--CCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCH
Confidence 467888889875 368999999753 335578899999999988754433
No 142
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=78.10 E-value=20 Score=27.10 Aligned_cols=74 Identities=23% Similarity=0.276 Sum_probs=50.0
Q ss_pred cCCEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-------CCHHHHHHHHHhcCCCCCCcEEEEecC
Q 048660 116 SSCKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-------MTGYELLKKIKESSVFREVPVVIMSSE 187 (213)
Q Consensus 116 ~g~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-------~~G~e~~~~ir~~~~~~~~pII~lt~~ 187 (213)
.+..+ ..+.+..++..... ..+|.|+++-..|. ..+++.++.+++. .++|+++..+-
T Consensus 107 ~~~~~~v~~~t~~e~~~~~~------------~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~pvia~GGI 171 (215)
T 1xi3_A 107 PNLIIGASVYSLEEALEAEK------------KGADYLGAGSVFPTKTKEDARVIGLEGLRKIVES---VKIPVVAIGGI 171 (215)
T ss_dssp TTSEEEEEESSHHHHHHHHH------------HTCSEEEEECSSCC----CCCCCHHHHHHHHHHH---CSSCEEEESSC
T ss_pred CCCEEEEecCCHHHHHHHHh------------cCCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHh---CCCCEEEECCc
Confidence 34433 33567777665432 24788888754443 3578889998875 26888876665
Q ss_pred CCHHHHHHHHHcCCCeee
Q 048660 188 DVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 188 ~~~~~~~~~~~~G~~~~L 205 (213)
. .+...++.+.|++++.
T Consensus 172 ~-~~nv~~~~~~Ga~gv~ 188 (215)
T 1xi3_A 172 N-KDNAREVLKTGVDGIA 188 (215)
T ss_dssp C-TTTHHHHHTTTCSEEE
T ss_pred C-HHHHHHHHHcCCCEEE
Confidence 5 7788888999999874
No 143
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=77.94 E-value=14 Score=28.53 Aligned_cols=77 Identities=17% Similarity=0.080 Sum_probs=54.6
Q ss_pred ccEEEEEe------CCHHHHHHHHHHHhhcCCEEEEE----cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC
Q 048660 93 ELHVLAVD------DSYVDRKLIERLLQISSCKVTAV----ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT 162 (213)
Q Consensus 93 ~~~ILvVd------D~~~~~~~l~~~L~~~g~~v~~a----~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~ 162 (213)
+.+|++|+ |...+...+.+.|++.|+.+... .+.++..+.+. ..|.|++ |+.+
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~-------------~ad~I~l----~GG~ 89 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR-------------KNDFIYV----TGGN 89 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH-------------HSSEEEE----CCSC
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH-------------hCCEEEE----CCCC
Confidence 46899996 44457778889999999998888 47777766663 3467776 7888
Q ss_pred HHHHHHHHHhcCC--------CCCCcEEEEec
Q 048660 163 GYELLKKIKESSV--------FREVPVVIMSS 186 (213)
Q Consensus 163 G~e~~~~ir~~~~--------~~~~pII~lt~ 186 (213)
-+.+++.+++..- ....|++-.++
T Consensus 90 ~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sA 121 (206)
T 3l4e_A 90 TFFLLQELKRTGADKLILEEIAAGKLYIGESA 121 (206)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHTTCEEEEETH
T ss_pred HHHHHHHHHHCChHHHHHHHHHcCCeEEEECH
Confidence 7788777775321 13467776664
No 144
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=77.59 E-value=4.5 Score=31.82 Aligned_cols=42 Identities=14% Similarity=0.336 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCC------HHHHHHHHHcCCCeeeeC
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDV------LTQIDSCLEEGAEEYIVK 207 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~------~~~~~~~~~~G~~~~L~K 207 (213)
++++++.+|+. .++||++++.... .+....+.++|++.++.-
T Consensus 68 ~~~~i~~i~~~---~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~ 115 (248)
T 1geq_A 68 AFWIVKEFRRH---SSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVV 115 (248)
T ss_dssp HHHHHHHHHTT---CCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEET
T ss_pred HHHHHHHHHhh---CCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEEC
Confidence 47788888875 3578888875333 467888999999988764
No 145
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=77.40 E-value=9.1 Score=28.45 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=47.6
Q ss_pred CccEEEEEeCCHHH--HHHHHHHHhhcCCEEEEE-c----CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC--
Q 048660 92 KELHVLAVDDSYVD--RKLIERLLQISSCKVTAV-E----SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT-- 162 (213)
Q Consensus 92 ~~~~ILvVdD~~~~--~~~l~~~L~~~g~~v~~a-~----~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~-- 162 (213)
...|||++.|+-.. ...++..|... +.|... . .....++.+.... ...+||+|++.+..-+..
T Consensus 19 ~~prVl~iGDSit~G~~~~l~~~l~~~-~~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~pd~Vvi~~G~ND~~~~ 90 (200)
T 4h08_A 19 DLPHVLLIGNSITRGYYGKVEAALKEK-AYVGRLSNSKSVGDPALIEELAVVL-------KNTKFDVIHFNNGLHGFDYT 90 (200)
T ss_dssp SSCEEEEEESHHHHHHHHHHHHHTTTT-CEEEEEEESCCTTCHHHHHHHHHHH-------HHSCCSEEEECCCSSCTTSC
T ss_pred CCCeEEEEchhHHhhhHHHHHHHhccC-CeEEEEeccCCccHHHHHHHHHHHH-------hcCCCCeEEEEeeeCCCCCC
Confidence 34589999999654 23455666543 233321 1 1123333332211 235799999977665532
Q ss_pred H-------HHHHHHHHhcCCCCCCcEEEEec
Q 048660 163 G-------YELLKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 163 G-------~e~~~~ir~~~~~~~~pII~lt~ 186 (213)
. -++++.+|+. .+..+||+++.
T Consensus 91 ~~~~~~~l~~ii~~l~~~--~p~~~ii~~~~ 119 (200)
T 4h08_A 91 EEEYDKSFPKLIKIIRKY--APKAKLIWANT 119 (200)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCEEEEECC
T ss_pred HHHHHHHHHHHHHHHhhh--CCCccEEEecc
Confidence 1 2356667765 56778887764
No 146
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=77.20 E-value=32 Score=29.03 Aligned_cols=101 Identities=15% Similarity=0.141 Sum_probs=65.0
Q ss_pred CccEEEEEe----CCHHHHHHHHHHHhhc-CCEEE--EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC----
Q 048660 92 KELHVLAVD----DSYVDRKLIERLLQIS-SCKVT--AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG---- 160 (213)
Q Consensus 92 ~~~~ILvVd----D~~~~~~~l~~~L~~~-g~~v~--~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~---- 160 (213)
.+..++++| +.....+.++.+-+.. +..+. .+.+.++|....+. -.|.|.+.+. |+
T Consensus 119 aGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a------------GAD~I~vG~g-pGs~~~ 185 (366)
T 4fo4_A 119 AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA------------GVSAVKVGIG-PGSICT 185 (366)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH------------TCSEEEECSS-CSTTBC
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc------------CCCEEEEecC-CCCCCC
Confidence 346677775 3444455555555554 55543 47888888877632 3577777321 21
Q ss_pred --------CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 161 --------MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 161 --------~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
...++++..+++.....++|||+--+-.+..+..+++.+|++...
T Consensus 186 tr~~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~ 238 (366)
T 4fo4_A 186 TRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVM 238 (366)
T ss_dssp HHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred cccccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 234566666654211247899988888889999999999998864
No 147
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=77.01 E-value=14 Score=31.70 Aligned_cols=94 Identities=16% Similarity=0.193 Sum_probs=58.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcC-HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVES-GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~-g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
+..|++||.|+...+.++ ..|+.+...+- -.+.|+.+ .-...|+|++-+.-+ ..-..++..+|
T Consensus 27 g~~vvvId~d~~~v~~~~----~~g~~vi~GDat~~~~L~~a-----------gi~~A~~viv~~~~~-~~n~~i~~~ar 90 (413)
T 3l9w_A 27 GVKMVVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESA-----------GAAKAEVLINAIDDP-QTNLQLTEMVK 90 (413)
T ss_dssp TCCEEEEECCHHHHHHHH----HTTCCCEESCTTCHHHHHHT-----------TTTTCSEEEECCSSH-HHHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHH----hCCCeEEEcCCCCHHHHHhc-----------CCCccCEEEECCCCh-HHHHHHHHHHH
Confidence 457888888876554433 45776654432 23345444 223567888765322 23455677777
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+. .++++||+-+.. ........++|++..+.
T Consensus 91 ~~--~p~~~Iiara~~--~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 91 EH--FPHLQIIARARD--VDHYIRLRQAGVEKPER 121 (413)
T ss_dssp HH--CTTCEEEEEESS--HHHHHHHHHTTCSSCEE
T ss_pred Hh--CCCCeEEEEECC--HHHHHHHHHCCCCEEEC
Confidence 76 567788877654 56677788999987764
No 148
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=76.72 E-value=6.3 Score=30.17 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=52.4
Q ss_pred HHHhhcCCEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC-CCCHHHHHHHHHhcCCCC-CCcEEEEecC
Q 048660 111 RLLQISSCKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP-GMTGYELLKKIKESSVFR-EVPVVIMSSE 187 (213)
Q Consensus 111 ~~L~~~g~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp-~~~G~e~~~~ir~~~~~~-~~pII~lt~~ 187 (213)
...++.|..+ ..+.+..++.+... ...|.|++ .| +..|.+.++++++. .+ ++||++..+-
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~------------~G~d~v~v---~~t~~~g~~~~~~l~~~--~~~~ipvia~GGI 157 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALE------------AGAQALKI---FPSSAFGPQYIKALKAV--LPSDIAVFAVGGV 157 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHH------------TTCSEEEE---TTHHHHCHHHHHHHHTT--SCTTCEEEEESSC
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHH------------CCCCEEEE---ecCCCCCHHHHHHHHHh--ccCCCeEEEeCCC
Confidence 4455566543 23678888776652 23677775 22 12367888888864 33 5899888777
Q ss_pred CCHHHHHHHHHcCCCeeee
Q 048660 188 DVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 188 ~~~~~~~~~~~~G~~~~L~ 206 (213)
. .++..+++++|++++..
T Consensus 158 ~-~~~i~~~~~~Ga~gv~v 175 (212)
T 2v82_A 158 T-PENLAQWIDAGCAGAGL 175 (212)
T ss_dssp C-TTTHHHHHHHTCSEEEE
T ss_pred C-HHHHHHHHHcCCCEEEE
Confidence 6 77888999999998763
No 149
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=76.65 E-value=12 Score=29.55 Aligned_cols=41 Identities=10% Similarity=0.290 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+++++++++. .++|+|+..+-.+.++..+++++|+++++.
T Consensus 188 ~~~~i~~l~~~---~~ipvia~GGI~~~ed~~~~~~~Gadgv~v 228 (266)
T 2w6r_A 188 DTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALA 228 (266)
T ss_dssp CHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHcCCHHHHc
Confidence 37889999875 478999999999889999999999998764
No 150
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=76.35 E-value=17 Score=29.63 Aligned_cols=95 Identities=15% Similarity=0.056 Sum_probs=59.4
Q ss_pred EEEEEeCCHHH----HHHHHHHHhhcC--CEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 95 HVLAVDDSYVD----RKLIERLLQISS--CKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 95 ~ILvVdD~~~~----~~~l~~~L~~~g--~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
-+||-|++-.. ...++..-+..+ .....+.+.+++.+.++ ...|+|.+|-.-| .+-.++.+
T Consensus 167 ~vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~------------aGaD~I~LDn~~~-~~~~~~v~ 233 (284)
T 1qpo_A 167 AALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLP------------EKPELILLDNFAV-WQTQTAVQ 233 (284)
T ss_dssp SEEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGG------------GCCSEEEEETCCH-HHHHHHHH
T ss_pred hhcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH------------cCCCEEEECCCCH-HHHHHHHH
Confidence 36676665332 223333333334 34557788999998874 2468999996333 23334555
Q ss_pred HHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 169 KIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
.++.. .+++ .|..|+.-+.+......+.|+|.+-
T Consensus 234 ~l~~~--~~~v-~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 234 RRDSR--APTV-MLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp HHHHH--CTTC-EEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred Hhhcc--CCCe-EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 55543 2344 5667888888899999999997653
No 151
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=74.71 E-value=21 Score=27.00 Aligned_cols=82 Identities=11% Similarity=0.084 Sum_probs=49.5
Q ss_pred hhcccCCCcchhhhhhhhcCCccEEEEEeCCHHHHHHHHHHHhhcCCE--EE-EEcCHHHHHHHhhhcCCCCCCCCCCCc
Q 048660 72 FKETNRGFPFWAMATVAECSKELHVLAVDDSYVDRKLIERLLQISSCK--VT-AVESGTRALQYLGLDGEQSNVGFDALK 148 (213)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~g~~--v~-~a~~g~eal~~l~~~~~~~~~~~~~~~ 148 (213)
.-+.+-|.......-........+|..||-++......+..++..|.. +. ...+..+.+..+... .....
T Consensus 62 vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~-------~~~~~ 134 (221)
T 3u81_A 62 VLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKK-------YDVDT 134 (221)
T ss_dssp EEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTT-------SCCCC
T ss_pred EEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHh-------cCCCc
Confidence 344444444333322222233568999999999999999998877752 43 456665655443100 01257
Q ss_pred eeEEEEeCCCCC
Q 048660 149 VNLIITDYTMPG 160 (213)
Q Consensus 149 ~dlil~D~~mp~ 160 (213)
||+|++|.....
T Consensus 135 fD~V~~d~~~~~ 146 (221)
T 3u81_A 135 LDMVFLDHWKDR 146 (221)
T ss_dssp CSEEEECSCGGG
T ss_pred eEEEEEcCCccc
Confidence 999999975443
No 152
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=74.40 E-value=12 Score=29.29 Aligned_cols=53 Identities=17% Similarity=0.249 Sum_probs=38.2
Q ss_pred EEEEeCCCCCCC---HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 151 LIITDYTMPGMT---GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 151 lil~D~~mp~~~---G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+.+.|....... -++.++.+++. ..+|+++..+-.+.++...++..|++..+.
T Consensus 48 i~v~d~~~~~~~~~~~~~~i~~i~~~---~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 48 LVFLDISATHEERAILLDVVARVAER---VFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp EEEEECCSSTTCHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred EEEEcCCccccCccccHHHHHHHHHh---CCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 445565433322 24557777753 479999999999999999999999988754
No 153
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=74.01 E-value=13 Score=25.22 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=16.1
Q ss_pred eCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHh
Q 048660 100 DDSYVDRKLIERLLQISSCKVTAVESGTRALQYL 133 (213)
Q Consensus 100 dD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l 133 (213)
|.++.-.+-.++-++..||.|.-+++.++|+..+
T Consensus 84 dqdeneleefkrkiesqgyevrkvtddeealkiv 117 (134)
T 2lci_A 84 DQDENELEEFKRKIESQGYEVRKVTDDEEALKIV 117 (134)
T ss_dssp CSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHH
T ss_pred cCchhHHHHHHHHHHhCCeeeeecCChHHHHHHH
Confidence 3333334444444444455555555555555444
No 154
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=73.82 E-value=29 Score=26.82 Aligned_cols=94 Identities=12% Similarity=0.023 Sum_probs=56.4
Q ss_pred hhhcccCCCcchhhhhhhhcCCccEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EEcCHHHHHHHhhhcCCCCCCCCCCC
Q 048660 71 KFKETNRGFPFWAMATVAECSKELHVLAVDDSYVDRKLIERLLQISSC--KVT-AVESGTRALQYLGLDGEQSNVGFDAL 147 (213)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~l~~~~~~~~~~~~~~ 147 (213)
..-+.+.|.......-........+|..+|-++...+..+..+++.|. .+. ...+..+.+..+...+ ....
T Consensus 73 ~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~------~~~~ 146 (237)
T 3c3y_A 73 KTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQ------ESEG 146 (237)
T ss_dssp EEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHST------TCTT
T ss_pred EEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcc------CCCC
Confidence 344445554433333222223356999999999999999999988876 243 4567777665442110 0134
Q ss_pred ceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 148 KVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 148 ~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
.||+|++|...+ +-..+++.+.+
T Consensus 147 ~fD~I~~d~~~~--~~~~~l~~~~~ 169 (237)
T 3c3y_A 147 SYDFGFVDADKP--NYIKYHERLMK 169 (237)
T ss_dssp CEEEEEECSCGG--GHHHHHHHHHH
T ss_pred CcCEEEECCchH--HHHHHHHHHHH
Confidence 799999996432 23445555544
No 155
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=73.38 E-value=12 Score=27.73 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=29.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHh--hcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQ--ISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT 157 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~--~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~ 157 (213)
.+.+||+||-|+. ..+..++. ..++.+..+.. ....+.+.. -...||+||+|..
T Consensus 29 ~g~~vlliD~D~~--~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~---------l~~~yD~viiD~~ 84 (206)
T 4dzz_A 29 SGYNIAVVDTDPQ--MSLTNWSKAGKAAFDVFTAAS-EKDVYGIRK---------DLADYDFAIVDGA 84 (206)
T ss_dssp TTCCEEEEECCTT--CHHHHHHTTSCCSSEEEECCS-HHHHHTHHH---------HTTTSSEEEEECC
T ss_pred CCCeEEEEECCCC--CCHHHHHhcCCCCCcEEecCc-HHHHHHHHH---------hcCCCCEEEEECC
Confidence 4578999998753 23344443 23455555543 222222221 1235899999973
No 156
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=73.23 E-value=11 Score=29.08 Aligned_cols=68 Identities=9% Similarity=0.057 Sum_probs=46.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCE---EEE-EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCK---VTA-VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELL 167 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~---v~~-a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~ 167 (213)
...+|..||-++...+..+..++..|.. +.. ..+..+.+..+ ....||+|++|...+. -.+++
T Consensus 80 ~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~-----------~~~~fD~V~~d~~~~~--~~~~l 146 (221)
T 3dr5_A 80 DNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL-----------ANDSYQLVFGQVSPMD--LKALV 146 (221)
T ss_dssp TTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS-----------CTTCEEEEEECCCTTT--HHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh-----------cCCCcCeEEEcCcHHH--HHHHH
Confidence 3568999999999999999999988764 544 34554444322 2457999999975443 33355
Q ss_pred HHHHh
Q 048660 168 KKIKE 172 (213)
Q Consensus 168 ~~ir~ 172 (213)
+.+.+
T Consensus 147 ~~~~~ 151 (221)
T 3dr5_A 147 DAAWP 151 (221)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 157
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=72.76 E-value=23 Score=29.35 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=48.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhc-CCEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC-----HH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQIS-SCKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT-----GY 164 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~-g~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~-----G~ 164 (213)
...+|.+||=++...+..++.+... +-++ ....|+.+.+..+ ....||+|++|...+... ..
T Consensus 112 p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~-----------~~~~fDvIi~D~~~~~~~~~~L~t~ 180 (317)
T 3gjy_A 112 PQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESF-----------TPASRDVIIRDVFAGAITPQNFTTV 180 (317)
T ss_dssp TTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTC-----------CTTCEEEEEECCSTTSCCCGGGSBH
T ss_pred CCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhc-----------cCCCCCEEEECCCCccccchhhhHH
Confidence 3458999999999999999888643 2233 4567877766533 345799999998665421 24
Q ss_pred HHHHHHHhc
Q 048660 165 ELLKKIKES 173 (213)
Q Consensus 165 e~~~~ir~~ 173 (213)
++++.+++.
T Consensus 181 efl~~~~r~ 189 (317)
T 3gjy_A 181 EFFEHCHRG 189 (317)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666653
No 158
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=72.64 E-value=11 Score=29.77 Aligned_cols=82 Identities=10% Similarity=0.109 Sum_probs=54.1
Q ss_pred HHhhcCCEEEEEcCHH---HHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-------HHHHHHHHhcCCCCCCcE
Q 048660 112 LLQISSCKVTAVESGT---RALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-------YELLKKIKESSVFREVPV 181 (213)
Q Consensus 112 ~L~~~g~~v~~a~~g~---eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-------~e~~~~ir~~~~~~~~pI 181 (213)
.+++.|..+..+-+.. +.++.+. .....|+|++-..-|+.+| ++-++++|+.. .+++
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l----------~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~--~~~~- 175 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPIL----------DTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKY--KNLN- 175 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHH----------TTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC--TTCE-
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHh----------hcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhc--cCCe-
Confidence 6677888887765433 3343331 1114788877766676544 56677777753 3554
Q ss_pred EEEecCCCHHHHHHHHHcCCCeeee
Q 048660 182 VIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 182 I~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
|.+.+.-+.+....+.++|+|.++.
T Consensus 176 I~VdGGI~~~ti~~~~~aGAd~~V~ 200 (227)
T 1tqx_A 176 IQVDGGLNIETTEISASHGANIIVA 200 (227)
T ss_dssp EEEESSCCHHHHHHHHHHTCCEEEE
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 5577777788999999999998764
No 159
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=72.60 E-value=42 Score=28.19 Aligned_cols=101 Identities=13% Similarity=0.123 Sum_probs=62.6
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHhhcCCEEE--EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC--------
Q 048660 93 ELHVLAVD----DSYVDRKLIERLLQISSCKVT--AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM-------- 158 (213)
Q Consensus 93 ~~~ILvVd----D~~~~~~~l~~~L~~~g~~v~--~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m-------- 158 (213)
+..+++++ +.....+.++.+-+..+..+. .+.+.++|....+ ...|.|.+-..-
T Consensus 117 Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~------------aGaD~I~VG~~~Gs~~~tr~ 184 (361)
T 3khj_A 117 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE------------NGADGIKVGIGPGSICTTRI 184 (361)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHH------------TTCSEEEECSSCCTTCCHHH
T ss_pred CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHH------------cCcCEEEEecCCCcCCCccc
Confidence 45566664 334445566665555566554 5678888777653 235777763210
Q ss_pred ---CCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 159 ---PGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 159 ---p~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
.+...++++..+++......+|||+-.+-.+..+..+++.+|++...
T Consensus 185 ~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~ 234 (361)
T 3khj_A 185 VAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVM 234 (361)
T ss_dssp HTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred ccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 01234555666643211236899988888889999999999999864
No 160
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=71.83 E-value=22 Score=29.28 Aligned_cols=81 Identities=21% Similarity=0.202 Sum_probs=55.8
Q ss_pred HHHHhhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC-----CCCHHHHHHHHHhcCCCCCCcEEE
Q 048660 110 ERLLQISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP-----GMTGYELLKKIKESSVFREVPVVI 183 (213)
Q Consensus 110 ~~~L~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp-----~~~G~e~~~~ir~~~~~~~~pII~ 183 (213)
...++..|..+. .+.+.++|....+ ...|.|+++-.-. ....+++++.+++. .++|||+
T Consensus 117 ~~~l~~~g~~v~~~v~s~~~a~~a~~------------~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~---~~iPvia 181 (326)
T 3bo9_A 117 IRELKENGTKVIPVVASDSLARMVER------------AGADAVIAEGMESGGHIGEVTTFVLVNKVSRS---VNIPVIA 181 (326)
T ss_dssp HHHHHHTTCEEEEEESSHHHHHHHHH------------TTCSCEEEECTTSSEECCSSCHHHHHHHHHHH---CSSCEEE
T ss_pred HHHHHHcCCcEEEEcCCHHHHHHHHH------------cCCCEEEEECCCCCccCCCccHHHHHHHHHHH---cCCCEEE
Confidence 344555676555 4577777766542 1357777753221 13567888888864 2689998
Q ss_pred EecCCCHHHHHHHHHcCCCeee
Q 048660 184 MSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 184 lt~~~~~~~~~~~~~~G~~~~L 205 (213)
-.+-.+.++..+++..|++++.
T Consensus 182 aGGI~~~~dv~~al~~GA~gV~ 203 (326)
T 3bo9_A 182 AGGIADGRGMAAAFALGAEAVQ 203 (326)
T ss_dssp ESSCCSHHHHHHHHHHTCSEEE
T ss_pred ECCCCCHHHHHHHHHhCCCEEE
Confidence 8888889999999999999864
No 161
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=71.81 E-value=52 Score=28.97 Aligned_cols=102 Identities=9% Similarity=0.086 Sum_probs=62.5
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHhhcC-CEEE--EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-----
Q 048660 93 ELHVLAVDD----SYVDRKLIERLLQISS-CKVT--AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG----- 160 (213)
Q Consensus 93 ~~~ILvVdD----~~~~~~~l~~~L~~~g-~~v~--~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~----- 160 (213)
+..+++++. .....+.++.+-+.++ ..+. .+.+.++|...... ..|.|.+...-..
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a------------Gad~i~vg~g~gsi~~~~ 335 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA------------GANVVKVGIGPGSICTTR 335 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH------------TCSEEEECSSCSTTCCHH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh------------CCCEEEECCCCccccccc
Confidence 566778873 3344455555555544 3333 46677777766532 3567766432111
Q ss_pred ------CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 161 ------MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 161 ------~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
...++++..+++......+|||+-.+-.+..+..+++.+||+..+.
T Consensus 336 ~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~v 387 (511)
T 3usb_A 336 VVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVML 387 (511)
T ss_dssp HHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred cccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence 2345555555432112368999988999999999999999998743
No 162
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=71.78 E-value=34 Score=27.97 Aligned_cols=79 Identities=10% Similarity=0.130 Sum_probs=51.4
Q ss_pred hhcCC-EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC--CCCH----------HHHHHHH----HhcCCC
Q 048660 114 QISSC-KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP--GMTG----------YELLKKI----KESSVF 176 (213)
Q Consensus 114 ~~~g~-~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp--~~~G----------~e~~~~i----r~~~~~ 176 (213)
++.|. .+..+.|.++|..+... .+|+|++...+- +.-| .+.++.+ ++. .
T Consensus 160 ~~~gL~Ti~~v~~~eeA~amA~a------------gpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~v--n 225 (286)
T 2p10_A 160 HKLDLLTTPYVFSPEDAVAMAKA------------GADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTI--R 225 (286)
T ss_dssp HHTTCEECCEECSHHHHHHHHHH------------TCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHH--C
T ss_pred HHCCCeEEEecCCHHHHHHHHHc------------CCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHh--C
Confidence 34565 66788999999887642 589999876431 2222 2233333 333 4
Q ss_pred CCCcEEEEe-cCCCHHHHHHHHHc--CCCeeee
Q 048660 177 REVPVVIMS-SEDVLTQIDSCLEE--GAEEYIV 206 (213)
Q Consensus 177 ~~~pII~lt-~~~~~~~~~~~~~~--G~~~~L~ 206 (213)
+++.++.-. +-...++.+.+++. |+++|+.
T Consensus 226 pdvivLc~gGpIstpeDv~~~l~~t~G~~G~~g 258 (286)
T 2p10_A 226 DDIIILSHGGPIANPEDARFILDSCQGCHGFYG 258 (286)
T ss_dssp SCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEE
T ss_pred CCcEEEecCCCCCCHHHHHHHHhcCCCccEEEe
Confidence 666555555 45788999999999 9999975
No 163
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=71.66 E-value=38 Score=27.34 Aligned_cols=85 Identities=9% Similarity=0.015 Sum_probs=57.0
Q ss_pred HHHHHHhhcCCEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC---CCCHHHHHHHHHhcCCCCCCcEEE
Q 048660 108 LIERLLQISSCKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP---GMTGYELLKKIKESSVFREVPVVI 183 (213)
Q Consensus 108 ~l~~~L~~~g~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp---~~~G~e~~~~ir~~~~~~~~pII~ 183 (213)
.+....+.+|..+ ..+.+.+|+...+. ..+|+|=+.-.-. ..| ++.+..+.+.- ...+++|.
T Consensus 160 ~l~~~a~~lGl~~lvevh~~eEl~~A~~------------~ga~iIGinnr~l~t~~~d-l~~~~~L~~~i-p~~~~vIa 225 (272)
T 3tsm_A 160 ELEDTAFALGMDALIEVHDEAEMERALK------------LSSRLLGVNNRNLRSFEVN-LAVSERLAKMA-PSDRLLVG 225 (272)
T ss_dssp HHHHHHHHTTCEEEEEECSHHHHHHHTT------------SCCSEEEEECBCTTTCCBC-THHHHHHHHHS-CTTSEEEE
T ss_pred HHHHHHHHcCCeEEEEeCCHHHHHHHHh------------cCCCEEEECCCCCccCCCC-hHHHHHHHHhC-CCCCcEEE
Confidence 3444445678865 46788888766652 2466665542211 112 45666666542 23689999
Q ss_pred EecCCCHHHHHHHHHcCCCeeee
Q 048660 184 MSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 184 lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
-++-.+.++..++.++|++++|.
T Consensus 226 esGI~t~edv~~l~~~Ga~gvLV 248 (272)
T 3tsm_A 226 ESGIFTHEDCLRLEKSGIGTFLI 248 (272)
T ss_dssp ESSCCSHHHHHHHHTTTCCEEEE
T ss_pred ECCCCCHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999975
No 164
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=71.47 E-value=3.1 Score=33.47 Aligned_cols=44 Identities=20% Similarity=0.372 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCC------HHHHHHHHHcCCCeeeeCC
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDV------LTQIDSCLEEGAEEYIVKP 208 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~------~~~~~~~~~~G~~~~L~KP 208 (213)
.+++++.+|+. .+++|+++++..+. ......+.++|+++++.-.
T Consensus 81 ~~~~v~~ir~~--~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~d 130 (262)
T 2ekc_A 81 VLELSETLRKE--FPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPD 130 (262)
T ss_dssp HHHHHHHHHHH--CTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTT
T ss_pred HHHHHHHHHhh--cCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECC
Confidence 55678888875 44789999854431 3556778999999988743
No 165
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=71.13 E-value=29 Score=26.46 Aligned_cols=68 Identities=12% Similarity=0.181 Sum_probs=44.2
Q ss_pred EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC--------CCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHH
Q 048660 123 VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP--------GMTGYELLKKIKESSVFREVPVVIMSSEDVLTQID 194 (213)
Q Consensus 123 a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp--------~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~ 194 (213)
+.+..++..... ..+|.|++....| ...|++.++++++. .+++|+++..+-. .+...
T Consensus 123 ~~t~~e~~~a~~------------~g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~--~~~~pvia~GGI~-~~nv~ 187 (227)
T 2tps_A 123 AHTMSEVKQAEE------------DGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQ--GISIPIVGIGGIT-IDNAA 187 (227)
T ss_dssp ECSHHHHHHHHH------------HTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHT--TCCCCEEEESSCC-TTTSH
T ss_pred cCCHHHHHHHHh------------CCCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHh--CCCCCEEEEcCCC-HHHHH
Confidence 467777555432 2467887622112 12368888998875 2248988776666 77777
Q ss_pred HHHHcCCCeee
Q 048660 195 SCLEEGAEEYI 205 (213)
Q Consensus 195 ~~~~~G~~~~L 205 (213)
+++++|++++.
T Consensus 188 ~~~~~Ga~gv~ 198 (227)
T 2tps_A 188 PVIQAGADGVS 198 (227)
T ss_dssp HHHHTTCSEEE
T ss_pred HHHHcCCCEEE
Confidence 88899998864
No 166
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=70.87 E-value=15 Score=28.48 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=39.0
Q ss_pred ceeEEEEeCCCCCCC-------HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 148 KVNLIITDYTMPGMT-------GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~dlil~D~~mp~~~-------G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..|.|+++...|+.+ +++.++++|+. .+++||++--+ -+.+....+.++|+|.++.
T Consensus 138 ~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~--~~~~pi~v~GG-I~~~ni~~~~~aGaD~vvv 200 (228)
T 1h1y_A 138 PVELVLVMTVEPGFGGQKFMPEMMEKVRALRKK--YPSLDIEVDGG-LGPSTIDVAASAGANCIVA 200 (228)
T ss_dssp CCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHH--CTTSEEEEESS-CSTTTHHHHHHHTCCEEEE
T ss_pred CCCEEEEEeecCCCCcccCCHHHHHHHHHHHHh--cCCCCEEEECC-cCHHHHHHHHHcCCCEEEE
Confidence 468898887777633 46677778775 23678765444 4457788888999998764
No 167
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=69.84 E-value=27 Score=28.74 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=53.8
Q ss_pred HHhhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC-----CCCHHHHHHHHHhcCCCCCCcEEEEe
Q 048660 112 LLQISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP-----GMTGYELLKKIKESSVFREVPVVIMS 185 (213)
Q Consensus 112 ~L~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp-----~~~G~e~~~~ir~~~~~~~~pII~lt 185 (213)
.++..|..+. .+.+.++|....+ ...|.|+++-.-. ....+++++.+++. -++|||+-.
T Consensus 105 ~l~~~g~~v~~~v~~~~~a~~~~~------------~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~---~~iPViaaG 169 (332)
T 2z6i_A 105 RFHEAGIIVIPVVPSVALAKRMEK------------IGADAVIAEGMEAGGHIGKLTTMTLVRQVATA---ISIPVIAAG 169 (332)
T ss_dssp HHHHTTCEEEEEESSHHHHHHHHH------------TTCSCEEEECTTSSEECCSSCHHHHHHHHHHH---CSSCEEEES
T ss_pred HHHHcCCeEEEEeCCHHHHHHHHH------------cCCCEEEEECCCCCCCCCCccHHHHHHHHHHh---cCCCEEEEC
Confidence 3444576554 4567666655442 2367777753211 23568889999875 368999888
Q ss_pred cCCCHHHHHHHHHcCCCeee
Q 048660 186 SEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 186 ~~~~~~~~~~~~~~G~~~~L 205 (213)
+-.+.++..+++..|++++.
T Consensus 170 GI~~~~~~~~al~~GAdgV~ 189 (332)
T 2z6i_A 170 GIADGEGAAAGFMLGAEAVQ 189 (332)
T ss_dssp SCCSHHHHHHHHHTTCSEEE
T ss_pred CCCCHHHHHHHHHcCCCEEE
Confidence 88889999999999998864
No 168
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=69.05 E-value=20 Score=27.91 Aligned_cols=55 Identities=11% Similarity=0.311 Sum_probs=40.5
Q ss_pred ee-EEEEeCCCCC-CC--HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 149 VN-LIITDYTMPG-MT--GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 149 ~d-lil~D~~mp~-~~--G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
++ +++++..-.+ .. .+++++++++. .++|||+-.+-.+.++..+++++|+++++.
T Consensus 165 ~~~i~~~~~~~~g~~~g~~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~Gadgv~v 223 (253)
T 1thf_D 165 AGEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALA 223 (253)
T ss_dssp CSEEEEEETTTTTSCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCEEEEEeccCCCCCCCCCHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCChHHHH
Confidence 44 5556654222 12 37889999874 378999988888889999999999998764
No 169
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=68.88 E-value=26 Score=24.33 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=30.4
Q ss_pred ceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 148 KVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..|+++.-.. ....-..++..+|+. . ...||+.+.. ......+.+.|++..+.
T Consensus 70 ~~d~vi~~~~-~~~~n~~~~~~a~~~--~-~~~iia~~~~--~~~~~~l~~~G~~~vi~ 122 (141)
T 3llv_A 70 GVSAVLITGS-DDEFNLKILKALRSV--S-DVYAIVRVSS--PKKKEEFEEAGANLVVL 122 (141)
T ss_dssp TCSEEEECCS-CHHHHHHHHHHHHHH--C-CCCEEEEESC--GGGHHHHHHTTCSEEEE
T ss_pred cCCEEEEecC-CHHHHHHHHHHHHHh--C-CceEEEEEcC--hhHHHHHHHcCCCEEEC
Confidence 5788887553 111234456666665 2 4456655543 34556678899876543
No 170
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=68.72 E-value=17 Score=28.34 Aligned_cols=95 Identities=19% Similarity=0.203 Sum_probs=55.3
Q ss_pred EEEEEeCC-HHHHHHHHHHHhhcCCEEEEEc---CHHHHHHHhhhcCCCCCCCCCCCcee-EEE-EeCCCCCCC------
Q 048660 95 HVLAVDDS-YVDRKLIERLLQISSCKVTAVE---SGTRALQYLGLDGEQSNVGFDALKVN-LII-TDYTMPGMT------ 162 (213)
Q Consensus 95 ~ILvVdD~-~~~~~~l~~~L~~~g~~v~~a~---~g~eal~~l~~~~~~~~~~~~~~~~d-lil-~D~~mp~~~------ 162 (213)
..+++.+. ......+.+.+++.|..+...- +..+.++.+... .| ++. +.. ++..
T Consensus 110 d~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~------------~d~~i~~~~~--~G~~g~~~~~ 175 (248)
T 1geq_A 110 DGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDM------------TTGFVYLVSL--YGTTGAREEI 175 (248)
T ss_dssp CEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH------------CSSEEEEECC--C-------CC
T ss_pred CEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc------------CCCeEEEEEC--CccCCCCCCC
Confidence 34444442 2233455556666777655443 345555555321 22 443 333 4322
Q ss_pred ---HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 163 ---GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 163 ---G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+++.++++++. .++||++-.+-...++..+++.+|+++++.
T Consensus 176 ~~~~~~~i~~l~~~---~~~pi~~~GGI~~~e~i~~~~~~Gad~viv 219 (248)
T 1geq_A 176 PKTAYDLLRRAKRI---CRNKVAVGFGVSKREHVVSLLKEGANGVVV 219 (248)
T ss_dssp CHHHHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ChhHHHHHHHHHhh---cCCCEEEEeecCCHHHHHHHHHcCCCEEEE
Confidence 35678888875 268988777777768899999999998764
No 171
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=68.45 E-value=5.1 Score=32.26 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCC------CHHHHHHHHHcCCCeeeeCCCC
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSED------VLTQIDSCLEEGAEEYIVKPVK 210 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~------~~~~~~~~~~~G~~~~L~KP~~ 210 (213)
++++++.+|+. ..++|+++++..+ .......+.++|+++++.-...
T Consensus 81 ~~~~v~~ir~~--~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~ 132 (268)
T 1qop_A 81 CFEMLAIIREK--HPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVP 132 (268)
T ss_dssp HHHHHHHHHHH--CSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCC
T ss_pred HHHHHHHHHhc--CCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCC
Confidence 56778888875 2478998876332 2467788999999988875443
No 172
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=68.34 E-value=13 Score=27.92 Aligned_cols=33 Identities=12% Similarity=0.053 Sum_probs=26.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESG 126 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g 126 (213)
++|+|||.-...-..+.+.|++.|+.+....+.
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~ 33 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNH 33 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETT
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECC
Confidence 379999976667778888999999988877655
No 173
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=68.11 E-value=12 Score=28.73 Aligned_cols=67 Identities=7% Similarity=-0.033 Sum_probs=45.0
Q ss_pred EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC--------CCHHHHHHHHHhcCCC-CCCcEEEEecCCCHHH
Q 048660 122 AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG--------MTGYELLKKIKESSVF-REVPVVIMSSEDVLTQ 192 (213)
Q Consensus 122 ~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~--------~~G~e~~~~ir~~~~~-~~~pII~lt~~~~~~~ 192 (213)
.+.+.+|+.+.. ...|.|+++-.-|. .-|++.++.+++. . .++|++++-+-. .+.
T Consensus 94 s~~t~~e~~~A~-------------~GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~--~~~~iPviaiGGI~-~~n 157 (210)
T 3ceu_A 94 SCHSVEEVKNRK-------------HFYDYVFMSPIYDSISKVNYYSTYTAEELREAQKA--KIIDSKVMALGGIN-EDN 157 (210)
T ss_dssp EECSHHHHHTTG-------------GGSSEEEECCCC---------CCCCHHHHHHHHHT--TCSSTTEEEESSCC-TTT
T ss_pred ecCCHHHHHHHh-------------hCCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHh--cCCCCCEEEECCCC-HHH
Confidence 456777765432 24688887654332 2367888888763 2 478999877765 677
Q ss_pred HHHHHHcCCCee
Q 048660 193 IDSCLEEGAEEY 204 (213)
Q Consensus 193 ~~~~~~~G~~~~ 204 (213)
..+++++|++++
T Consensus 158 v~~~~~~Ga~gV 169 (210)
T 3ceu_A 158 LLEIKDFGFGGA 169 (210)
T ss_dssp HHHHHHTTCSEE
T ss_pred HHHHHHhCCCEE
Confidence 888999999886
No 174
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=67.03 E-value=58 Score=27.56 Aligned_cols=92 Identities=9% Similarity=0.122 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhhc-CCEEE--EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC-----------CCCCHHHHHH
Q 048660 103 YVDRKLIERLLQIS-SCKVT--AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM-----------PGMTGYELLK 168 (213)
Q Consensus 103 ~~~~~~l~~~L~~~-g~~v~--~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m-----------p~~~G~e~~~ 168 (213)
....+.++.+-+.. +..+. .+.+.++|....+ ...|.|.+...- .+...++.+.
T Consensus 179 ~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~------------~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~ 246 (404)
T 1eep_A 179 TRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS------------VGADCLKVGIGPGSICTTRIVAGVGVPQITAIC 246 (404)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT------------TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh------------cCCCEEEECCCCCcCcCccccCCCCcchHHHHH
Confidence 34444555444444 55554 4667777766552 246777772110 0223456666
Q ss_pred HHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 169 KIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+++.....++|||+-.+-.+..+..+++.+|++.+..
T Consensus 247 ~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 247 DVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp HHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 66653223479999988888899999999999998643
No 175
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=66.84 E-value=15 Score=28.98 Aligned_cols=40 Identities=10% Similarity=0.307 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
++.++.+++. ..+|+++..+..+..+...+++.|++..+.
T Consensus 63 ~~~i~~i~~~---~~iPvi~~ggi~~~~~i~~~~~~Gad~v~l 102 (266)
T 2w6r_A 63 TEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADKALA 102 (266)
T ss_dssp HHHHHHHGGG---CCSCEEEESCCCSTHHHHHHHHHTCSEEEC
T ss_pred HHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCcHhhh
Confidence 7888888874 478999988877788899999999998764
No 176
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=66.64 E-value=22 Score=28.46 Aligned_cols=86 Identities=13% Similarity=0.155 Sum_probs=52.8
Q ss_pred HHHHHhhcCCE--EEEEc-CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEe
Q 048660 109 IERLLQISSCK--VTAVE-SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMS 185 (213)
Q Consensus 109 l~~~L~~~g~~--v~~a~-~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt 185 (213)
++..|..-... .+... +..+.++.+. ...+|.|++|+.-...+.-.+...++... ....++++=.
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~-----------~~g~D~vilDlEhav~~~~k~~~~l~a~~-~~~~~~~VRV 73 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYA-----------EAGLDYFIVDCEHAAYTFREINHLVSVAK-NAGVSVLVRI 73 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHH-----------HTTCSEEEEESSSSCCCHHHHHHHHHHHH-HHTCEEEEEC
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHh-----------cCCcCEEEEeccCCCCCHHHHHHHHHHHh-hcCCeEEEEe
Confidence 45555543332 23323 4455666653 23689999999988777767766666532 1233444433
Q ss_pred cCCCHHHHHHHHHcCCCeeee
Q 048660 186 SEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 186 ~~~~~~~~~~~~~~G~~~~L~ 206 (213)
...+..+..++++.|+++.+.
T Consensus 74 n~~~~~di~~~ld~G~~gI~l 94 (261)
T 3qz6_A 74 PQVDRAHVQRLLDIGAEGFMI 94 (261)
T ss_dssp SSCCHHHHHHHHHHTCCEEEE
T ss_pred CCCCHHHHHHHHhcCCCEEEE
Confidence 344567899999999988754
No 177
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=66.07 E-value=8.3 Score=30.97 Aligned_cols=42 Identities=21% Similarity=0.216 Sum_probs=35.8
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 162 TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+.+.++++++. .++|+++..+-.+.++..+++++|+++++.
T Consensus 165 ~~~~~l~~i~~~---~~iPviv~gGI~t~eda~~~~~~GAdgViV 206 (264)
T 1xm3_A 165 LNPLNLSFIIEQ---AKVPVIVDAGIGSPKDAAYAMELGADGVLL 206 (264)
T ss_dssp SCHHHHHHHHHH---CSSCBEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHhc---CCCCEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 357888999874 479999999988899999999999999864
No 178
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=65.31 E-value=14 Score=25.91 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=37.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
.++.+|+==-++.+|+.+.+.|..+|..+...... .....+|++|+|-
T Consensus 6 dgVt~lLdIts~Eir~IV~~~L~~~GA~~i~~der-----------------~~~~eyDi~lTDn 53 (117)
T 2kx7_A 6 DDVCVMVDVTSAEIRNIVTRQLENWGATCITPDER-----------------LISQDYDIFLTDN 53 (117)
T ss_dssp SSEEEEEECSSHHHHHHHHHHHHHHTEEEECCCSS-----------------SSCCCCSEEEEES
T ss_pred cCcEEEEEcCcHHHHHHHHHHHHhcCCeEEecccc-----------------CCCCcccEEEecC
Confidence 35677777789999999999999999988766431 1446799999995
No 179
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=65.23 E-value=7.7 Score=31.61 Aligned_cols=59 Identities=22% Similarity=0.267 Sum_probs=40.4
Q ss_pred CccEEEEEeC-----CHHHHHHHHHHHhhcC-CEEEEEcCHH-----HHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC
Q 048660 92 KELHVLAVDD-----SYVDRKLIERLLQISS-CKVTAVESGT-----RALQYLGLDGEQSNVGFDALKVNLIITDYTMPG 160 (213)
Q Consensus 92 ~~~~ILvVdD-----~~~~~~~l~~~L~~~g-~~v~~a~~g~-----eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~ 160 (213)
+.++|||+.- -+.....|..+|++.| +.|.+..+.. +.+ .. .-..||+||++..+..
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f---~~---------~L~~~D~vV~~~~~~~ 70 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGF---VL---------DFSPYQLVVLDYNGDS 70 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTC---CC---------CCTTCSEEEECCCSSC
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHH---hh---------hhhcCCEEEEeCCCCc
Confidence 4579999975 3566688999999888 9999887631 111 00 1136999999886555
Q ss_pred CC
Q 048660 161 MT 162 (213)
Q Consensus 161 ~~ 162 (213)
.+
T Consensus 71 l~ 72 (281)
T 4e5v_A 71 WP 72 (281)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 180
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=65.16 E-value=71 Score=27.93 Aligned_cols=100 Identities=13% Similarity=0.129 Sum_probs=64.3
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHhhc-CCEEE--EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-----
Q 048660 93 ELHVLAVD----DSYVDRKLIERLLQIS-SCKVT--AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG----- 160 (213)
Q Consensus 93 ~~~ILvVd----D~~~~~~~l~~~L~~~-g~~v~--~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~----- 160 (213)
+..++++| ......+.++.+-+.. +..+. .+.+.++|..... ...|.|.+-.. |+
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~------------aGaD~I~vg~g-~Gs~~~t 307 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAE------------AGADAVKVGIG-PGSICTT 307 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHH------------TTCSEEEECSS-CSTTCHH
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHH------------cCCCEEEECCC-CCcCCCc
Confidence 45677776 3445556666666655 43333 3677777776653 23577776321 11
Q ss_pred -------CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 161 -------MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 161 -------~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
...++++..+.+......+|||+-.+-.+..+..+++.+||+...
T Consensus 308 ~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~ 359 (490)
T 4avf_A 308 RIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVM 359 (490)
T ss_dssp HHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred cccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeee
Confidence 234566666665322347999999898899999999999999864
No 181
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=64.84 E-value=15 Score=31.17 Aligned_cols=56 Identities=11% Similarity=0.067 Sum_probs=39.8
Q ss_pred ceeEEEEeCCCCCCC-HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 148 KVNLIITDYTMPGMT-GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~dlil~D~~mp~~~-G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+|+|.+|....... -.+.++.||+. ++.+||++ -.-.+.+....+.++|+|....
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~--~~~~~Vi~-G~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQL--LGSRCIMA-GNVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHH--HTTCEEEE-EEECSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHh--cCCCeEEE-cCcCCHHHHHHHHHcCCCEEEE
Confidence 478999987654322 25688889886 45778776 1234577889999999988764
No 182
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=64.67 E-value=57 Score=26.63 Aligned_cols=80 Identities=19% Similarity=0.133 Sum_probs=55.1
Q ss_pred HHHhhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-------CCHHHHHHHHHhcCCCCCCcEE
Q 048660 111 RLLQISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-------MTGYELLKKIKESSVFREVPVV 182 (213)
Q Consensus 111 ~~L~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-------~~G~e~~~~ir~~~~~~~~pII 182 (213)
..+++.|..+. .+.+.+++..... ...|.|+++-.-++ ...+++++++++. .++|||
T Consensus 112 ~~l~~~gi~vi~~v~t~~~a~~~~~------------~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~---~~iPvi 176 (328)
T 2gjl_A 112 AEFRRHGVKVIHKCTAVRHALKAER------------LGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANR---LRVPII 176 (328)
T ss_dssp HHHHHTTCEEEEEESSHHHHHHHHH------------TTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTT---CCSCEE
T ss_pred HHHHHcCCCEEeeCCCHHHHHHHHH------------cCCCEEEEECCCCCcCCCCccccHHHHHHHHHHh---cCCCEE
Confidence 44555576554 3677777776552 24677777532221 2567888888864 378999
Q ss_pred EEecCCCHHHHHHHHHcCCCeee
Q 048660 183 IMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 183 ~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
+-.+-.+.++..+++..|++++.
T Consensus 177 aaGGI~~~~~v~~al~~GAdgV~ 199 (328)
T 2gjl_A 177 ASGGFADGRGLVAALALGADAIN 199 (328)
T ss_dssp EESSCCSHHHHHHHHHHTCSEEE
T ss_pred EECCCCCHHHHHHHHHcCCCEEE
Confidence 88888788899999999998864
No 183
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=64.42 E-value=17 Score=30.04 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=45.8
Q ss_pred EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHH
Q 048660 119 KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLE 198 (213)
Q Consensus 119 ~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~ 198 (213)
..+.+++.+|+.+.++. ..|+|.+|- |+--++-+.++.. ..+ ..+..|+.-+.+......+
T Consensus 210 IeVEv~tl~e~~eAl~a------------GaDiImLDn----~s~~~l~~av~~~--~~~-v~leaSGGIt~~~i~~~A~ 270 (300)
T 3l0g_A 210 IAIECDNISQVEESLSN------------NVDMILLDN----MSISEIKKAVDIV--NGK-SVLEVSGCVNIRNVRNIAL 270 (300)
T ss_dssp EEEEESSHHHHHHHHHT------------TCSEEEEES----CCHHHHHHHHHHH--TTS-SEEEEESSCCTTTHHHHHT
T ss_pred EEEEECCHHHHHHHHHc------------CCCEEEECC----CCHHHHHHHHHhh--cCc-eEEEEECCCCHHHHHHHHH
Confidence 45678999999998842 479999994 3322332223222 122 4677899988999999999
Q ss_pred cCCCee
Q 048660 199 EGAEEY 204 (213)
Q Consensus 199 ~G~~~~ 204 (213)
.|+|-+
T Consensus 271 tGVD~I 276 (300)
T 3l0g_A 271 TGVDYI 276 (300)
T ss_dssp TTCSEE
T ss_pred cCCCEE
Confidence 999654
No 184
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=63.69 E-value=9.3 Score=30.93 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCC------CHHHHHHHHHcCCCeeeeCCC
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSED------VLTQIDSCLEEGAEEYIVKPV 209 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~------~~~~~~~~~~~G~~~~L~KP~ 209 (213)
.++.++.+|+. .++|+++++-.+ .......+.++|+++++.--+
T Consensus 79 ~~~~v~~ir~~---~~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl 128 (271)
T 1ujp_A 79 ALELVREVRAL---TEKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDL 128 (271)
T ss_dssp HHHHHHHHHHH---CCSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTC
T ss_pred HHHHHHHHHhc---CCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCC
Confidence 35678888875 478999985322 245577799999999887543
No 185
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=63.64 E-value=16 Score=32.23 Aligned_cols=56 Identities=9% Similarity=0.194 Sum_probs=42.7
Q ss_pred ceeEEEEeCCCCCCC-HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 148 KVNLIITDYTMPGMT-GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~dlil~D~~mp~~~-G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+|+|.+|...+... -.+.++++|+. .+++||++ ..-...+....+.++|+|.+..
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~--~p~~~Vi~-g~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAA--YPHLEIIG-GNVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHH--CTTCCEEE-EEECSHHHHHHHHHHTCSEEEE
T ss_pred cCceEEeccccccchHHHHHHHHHHHH--CCCceEEE-cccCcHHHHHHHHHhCCCEEEE
Confidence 589999999877543 45788999987 46788876 3344567888999999988763
No 186
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=63.13 E-value=15 Score=28.09 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+++.++++++. -++||++..+-.+.++..+++++|++.++.
T Consensus 163 ~~~~~~~~~~~---~~ipvia~GGI~~~~~~~~~~~~Gad~v~v 203 (223)
T 1y0e_A 163 DFQFLKDVLQS---VDAKVIAEGNVITPDMYKRVMDLGVHCSVV 203 (223)
T ss_dssp HHHHHHHHHHH---CCSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHHhh---CCCCEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence 45678888875 268999888887899999999999998753
No 187
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=62.67 E-value=57 Score=25.98 Aligned_cols=70 Identities=14% Similarity=0.107 Sum_probs=47.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcC-----CEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC--H
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISS-----CKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT--G 163 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g-----~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~--G 163 (213)
...+|..||-++...+..++.+...+ -++ ....|+.+.+... ...||+|++|...|... +
T Consensus 101 ~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------------~~~fD~Ii~d~~~~~~~~~~ 168 (283)
T 2i7c_A 101 SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------------TNTYDVIIVDSSDPIGPAET 168 (283)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------------CSCEEEEEEECCCTTTGGGG
T ss_pred CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC------------CCCceEEEEcCCCCCCcchh
Confidence 34689999999999999998886531 223 3566776655432 34799999998655422 1
Q ss_pred ---HHHHHHHHhc
Q 048660 164 ---YELLKKIKES 173 (213)
Q Consensus 164 ---~e~~~~ir~~ 173 (213)
.++++.+++.
T Consensus 169 l~~~~~l~~~~~~ 181 (283)
T 2i7c_A 169 LFNQNFYEKIYNA 181 (283)
T ss_dssp GSSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHh
Confidence 3667777654
No 188
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=62.63 E-value=20 Score=27.91 Aligned_cols=55 Identities=27% Similarity=0.382 Sum_probs=39.0
Q ss_pred ee-EEEEeCCCCCC---CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHc---CCCeeee
Q 048660 149 VN-LIITDYTMPGM---TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEE---GAEEYIV 206 (213)
Q Consensus 149 ~d-lil~D~~mp~~---~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~---G~~~~L~ 206 (213)
++ +++++..-.++ -.+++++++++. .++|||+-.+-.+.++..+++++ |+++++.
T Consensus 160 ~~~i~~~~~~~~~~~~g~~~~~~~~i~~~---~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~v 221 (244)
T 1vzw_A 160 CARYVVTDIAKDGTLQGPNLELLKNVCAA---TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIV 221 (244)
T ss_dssp CCCEEEEEC-------CCCHHHHHHHHHT---CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CCEEEEeccCcccccCCCCHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHhhccCCCceeee
Confidence 45 55676542221 247888999874 36899998888888999999999 9998753
No 189
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=62.54 E-value=63 Score=27.27 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=46.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC----------CEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC-CC--
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISS----------CKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM-PG-- 160 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g----------~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m-p~-- 160 (213)
.+|.+||-|+...+..++.+...+ -.-....|+.+.++.+.. ....||+|++|..- |.
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~---------~~~~fDvII~D~~d~P~~~ 282 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK---------EGREFDYVINDLTAVPIST 282 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH---------HTCCEEEEEEECCSSCCCC
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhc---------cCCCceEEEECCCCcccCc
Confidence 689999999999999999886431 123456788877765421 13479999999865 42
Q ss_pred ----CCHHHHHHHH
Q 048660 161 ----MTGYELLKKI 170 (213)
Q Consensus 161 ----~~G~e~~~~i 170 (213)
.-..++.+.+
T Consensus 283 ~p~~L~t~eFy~~~ 296 (364)
T 2qfm_A 283 SPEEDSTWEFLRLI 296 (364)
T ss_dssp C----CHHHHHHHH
T ss_pred CchhhhHHHHHHHH
Confidence 2345677766
No 190
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=62.46 E-value=24 Score=28.89 Aligned_cols=56 Identities=9% Similarity=0.070 Sum_probs=44.1
Q ss_pred eeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 149 ~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.++|.+|..- .....++++++++.. ...+|+++=-+-.+.++..+++++|+|..+.
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~-~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVV 255 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGL-GPDQVLFVSGNVRSGRQVTEYLDSGADYVGF 255 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHS-CTTCEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhc-CCCCCEEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 4799999755 334568999999862 1278998878888999999999999998764
No 191
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=62.37 E-value=61 Score=26.22 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=41.5
Q ss_pred CceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 147 LKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 147 ~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..+|.|++|+.-...+--.+...++... ....++++=+...+..+..++++.|++..+.
T Consensus 59 ~GaD~v~lDlEh~~~~~~~~~~~l~a~~-~~~~~~~VRv~~~d~~di~~~ld~ga~~Iml 117 (287)
T 2v5j_A 59 AGFDWLLIDGEHAPNNVQTVLTQLQAIA-PYPSQPVVRPSWNDPVQIKQLLDVGTQTLLV 117 (287)
T ss_dssp SCCSEEEEESSSSSCCHHHHHHHHHHHT-TSSSEEEEECSSSCHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEEeCCCccchHHHHHHHHHHHH-hcCCCEEEEECCCCHHHHHHHHhCCCCEEEe
Confidence 4689999999776555555555555432 2356667666677788999999999987654
No 192
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=62.28 E-value=58 Score=26.41 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=46.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh--cC----CEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CCH-
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQI--SS----CKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MTG- 163 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~--~g----~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~G- 163 (213)
..+|..||-++...+..++.+.. .| -++ ....|+.+.+... ...||+|++|...|. .+|
T Consensus 101 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------------~~~fD~Ii~d~~~~~~~~~~ 168 (314)
T 1uir_A 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT------------EERYDVVIIDLTDPVGEDNP 168 (314)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC------------CCCEEEEEEECCCCBSTTCG
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc------------CCCccEEEECCCCcccccCc
Confidence 46899999999999988888754 11 223 3556776655432 347999999987665 112
Q ss_pred ------HHHHHHHHhc
Q 048660 164 ------YELLKKIKES 173 (213)
Q Consensus 164 ------~e~~~~ir~~ 173 (213)
.++++.+++.
T Consensus 169 ~~~l~~~~~l~~~~~~ 184 (314)
T 1uir_A 169 ARLLYTVEFYRLVKAH 184 (314)
T ss_dssp GGGGSSHHHHHHHHHT
T ss_pred chhccHHHHHHHHHHh
Confidence 4667777654
No 193
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=61.44 E-value=7.4 Score=31.14 Aligned_cols=58 Identities=14% Similarity=0.208 Sum_probs=36.5
Q ss_pred ceeEEEEeCCCCCCCH-------HHHHHHHHhcCC--CCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 148 KVNLIITDYTMPGMTG-------YELLKKIKESSV--FREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~dlil~D~~mp~~~G-------~e~~~~ir~~~~--~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..|+|++=...|+..| ++-++++|+... ..+++ |.+.+.-+.+....+.++|+|.++.
T Consensus 156 ~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~-I~VDGGI~~~ti~~~~~aGAD~~V~ 222 (246)
T 3inp_A 156 NIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDIL-LEIDGGVNPYNIAEIAVCGVNAFVA 222 (246)
T ss_dssp GCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCE-EEEESSCCTTTHHHHHTTTCCEEEE
T ss_pred cCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCee-EEEECCcCHHHHHHHHHcCCCEEEE
Confidence 4677776555676655 455566664210 12344 5577777788899999999998764
No 194
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=60.92 E-value=20 Score=31.49 Aligned_cols=56 Identities=20% Similarity=0.225 Sum_probs=42.2
Q ss_pred ceeEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 148 KVNLIITDYTMPGM-TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~dlil~D~~mp~~-~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+|+|.+|...+.. .-.+.++.+++. .+.+||++- .-.+.+....+.++|+|....
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~--~p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQT--FPDVQVIGG-NIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHH--CTTSEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred ccceEEecccCCcchhHHHHHHHHHHH--CCCceEEEe-eeCcHHHHHHHHHcCCCEEEE
Confidence 57999999887653 345788999886 467788763 344577889999999988764
No 195
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=60.75 E-value=16 Score=28.55 Aligned_cols=53 Identities=19% Similarity=0.352 Sum_probs=39.7
Q ss_pred EEEEeCCCCC-CC--HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 151 LIITDYTMPG-MT--GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 151 lil~D~~mp~-~~--G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+++.+..-.+ .. .+++++++++. .++|+|+..+-.+.++..++++.|+++++.
T Consensus 169 i~~~~~~~~g~~~g~~~~~i~~l~~~---~~ipvia~GGI~~~~d~~~~~~~Gadgv~v 224 (252)
T 1ka9_F 169 ILLTSMDRDGTKEGYDLRLTRMVAEA---VGVPVIASGGAGRMEHFLEAFQAGAEAALA 224 (252)
T ss_dssp EEEEETTTTTTCSCCCHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EEEecccCCCCcCCCCHHHHHHHHHH---cCCCEEEeCCCCCHHHHHHHHHCCCHHHHH
Confidence 5556553222 12 38899999875 378999998888889999999999998764
No 196
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=60.74 E-value=67 Score=26.71 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=52.6
Q ss_pred hhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC---------C-----C--CCHHHHHHHHHhcCCC
Q 048660 114 QISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM---------P-----G--MTGYELLKKIKESSVF 176 (213)
Q Consensus 114 ~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m---------p-----~--~~G~e~~~~ir~~~~~ 176 (213)
+..|..+. .+.+.++|..... ...|.|+++-.- + . .+.+++++.+++.
T Consensus 142 ~~~g~~v~~~v~t~~~a~~a~~------------~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~--- 206 (369)
T 3bw2_A 142 RRAGTLTLVTATTPEEARAVEA------------AGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREA--- 206 (369)
T ss_dssp HHTTCEEEEEESSHHHHHHHHH------------TTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHH---
T ss_pred HHCCCeEEEECCCHHHHHHHHH------------cCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHh---
Confidence 33566543 5677777765542 246888875311 1 0 2348889999875
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 177 REVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 177 ~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
.++|||+..+-.+.+...+++..|++.+.
T Consensus 207 ~~iPViaaGGI~~~~~~~~~l~~GAd~V~ 235 (369)
T 3bw2_A 207 VDIPVVAAGGIMRGGQIAAVLAAGADAAQ 235 (369)
T ss_dssp CSSCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred cCceEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 37899988877789999999999998764
No 197
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=60.31 E-value=31 Score=29.40 Aligned_cols=57 Identities=14% Similarity=0.120 Sum_probs=40.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC------CE---E-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISS------CK---V-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP 159 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g------~~---v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp 159 (213)
.+|-+||=|+.+-+..+++|.... .+ + ....||.+.++.... ....||+||+|+.-+
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~---------~~~~yDvIIvDl~D~ 295 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK---------EGREFDYVINDLTAV 295 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH---------HTCCEEEEEEECCSS
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh---------ccCceeEEEECCCCC
Confidence 478899999999999999875321 11 3 457888888875532 234799999998543
No 198
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=60.05 E-value=9.2 Score=31.35 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCCCCcEEEE--ecCCCHHHHHHHHHcCCCeeee
Q 048660 163 GYELLKKIKESSVFREVPVVIM--SSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~l--t~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+++++++++. .++|||++ .+-.+.++..++++.|+++++.
T Consensus 186 d~elI~~Ike~---~~IPVV~IAnGGI~TpedA~~~le~GaDGVmV 228 (291)
T 3o07_A 186 PVSLLKDVLEK---GKLPVVNFAAGGVATPADAALLMQLGCDGVFV 228 (291)
T ss_dssp CHHHHHHHHHH---TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEE
T ss_pred CHHHHHHHHHc---cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEE
Confidence 47888999875 47899876 4445789999999999999864
No 199
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=59.95 E-value=55 Score=24.96 Aligned_cols=66 Identities=17% Similarity=0.150 Sum_probs=47.2
Q ss_pred EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-C-CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHc
Q 048660 122 AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-M-TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEE 199 (213)
Q Consensus 122 ~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~-~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~ 199 (213)
-+.+..|+.+..+. ..|.|-+ -|. . .|.+.++.++.. .+++|++..-+-. .+....++.+
T Consensus 110 G~~t~~e~~~A~~~------------Gad~v~~---fpa~~~gG~~~lk~l~~~--~~~ipvvaiGGI~-~~n~~~~l~a 171 (207)
T 2yw3_A 110 GVLTPTEVERALAL------------GLSALKF---FPAEPFQGVRVLRAYAEV--FPEVRFLPTGGIK-EEHLPHYAAL 171 (207)
T ss_dssp EECSHHHHHHHHHT------------TCCEEEE---TTTTTTTHHHHHHHHHHH--CTTCEEEEBSSCC-GGGHHHHHTC
T ss_pred cCCCHHHHHHHHHC------------CCCEEEE---ecCccccCHHHHHHHHhh--CCCCcEEEeCCCC-HHHHHHHHhC
Confidence 47788888877631 3566655 343 2 388999999976 5689988665554 6889999999
Q ss_pred CCCeee
Q 048660 200 GAEEYI 205 (213)
Q Consensus 200 G~~~~L 205 (213)
|++.+.
T Consensus 172 Ga~~va 177 (207)
T 2yw3_A 172 PNLLAV 177 (207)
T ss_dssp SSBSCE
T ss_pred CCcEEE
Confidence 998753
No 200
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=59.87 E-value=36 Score=27.12 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=45.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc--C---CEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC-----
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQIS--S---CKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM----- 161 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~--g---~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~----- 161 (213)
..+|..||-++...+..++.+... + -++ ....|+.+.+.. ....||+|++|...|..
T Consensus 99 ~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~------------~~~~fD~Ii~d~~~~~~~~~~l 166 (275)
T 1iy9_A 99 VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK------------SENQYDVIMVDSTEPVGPAVNL 166 (275)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT------------CCSCEEEEEESCSSCCSCCCCC
T ss_pred CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh------------CCCCeeEEEECCCCCCCcchhh
Confidence 468999999999999998887531 1 123 345666555432 23479999999866532
Q ss_pred CHHHHHHHHHhc
Q 048660 162 TGYELLKKIKES 173 (213)
Q Consensus 162 ~G~e~~~~ir~~ 173 (213)
...++.+.+++.
T Consensus 167 ~~~~~~~~~~~~ 178 (275)
T 1iy9_A 167 FTKGFYAGIAKA 178 (275)
T ss_dssp STTHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 124566666653
No 201
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=59.29 E-value=29 Score=26.20 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=27.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHH
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTR 128 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~e 128 (213)
+|+|||=-.-+...+.+.|++.|+.+....+.++
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~ 37 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQV 37 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHH
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHH
Confidence 6999986656667788899999999998888654
No 202
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=59.27 E-value=71 Score=25.95 Aligned_cols=91 Identities=18% Similarity=0.132 Sum_probs=55.8
Q ss_pred EEEEEeCCHHHH----HHHHHHHhhcCC---EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHH
Q 048660 95 HVLAVDDSYVDR----KLIERLLQISSC---KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELL 167 (213)
Q Consensus 95 ~ILvVdD~~~~~----~~l~~~L~~~g~---~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~ 167 (213)
-+||.||+.... ..++..-+..+. ....+.+.+++.+.+.. ..|.|.+|-.-| +.+
T Consensus 168 ~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~a------------GaD~I~ld~~~~-----~~~ 230 (286)
T 1x1o_A 168 GILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEA------------GADLILLDNFPL-----EAL 230 (286)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHH------------TCSEEEEESCCH-----HHH
T ss_pred ceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc------------CCCEEEECCCCH-----HHH
Confidence 478888776542 233333344443 23467888898887742 368999996322 222
Q ss_pred HHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 168 KKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 168 ~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
+.+.+.- ..++|+++ ++.-+.+......+.|+|.+
T Consensus 231 k~av~~v-~~~ipi~A-sGGIt~eni~~~a~tGvD~I 265 (286)
T 1x1o_A 231 REAVRRV-GGRVPLEA-SGNMTLERAKAAAEAGVDYV 265 (286)
T ss_dssp HHHHHHH-TTSSCEEE-ESSCCHHHHHHHHHHTCSEE
T ss_pred HHHHHHh-CCCCeEEE-EcCCCHHHHHHHHHcCCCEE
Confidence 3332211 13567665 66677889999999999765
No 203
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=58.77 E-value=21 Score=29.60 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 160 GMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 160 ~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+....+.++.+++. ..++|||+..+-.+.++..+++.+||+.+..
T Consensus 235 g~~~~~~l~~v~~~--~~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 279 (349)
T 1p0k_A 235 GISTAASLAEIRSE--FPASTMIASGGLQDALDVAKAIALGASCTGM 279 (349)
T ss_dssp SCCHHHHHHHHHHH--CTTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CccHHHHHHHHHHh--cCCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 35677788888775 3579999999999999999999999998753
No 204
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=58.48 E-value=14 Score=28.22 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=35.3
Q ss_pred eeEEEEeCCCCCCCH-------HHHHHHHHhcC--CCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 149 VNLIITDYTMPGMTG-------YELLKKIKESS--VFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 149 ~dlil~D~~mp~~~G-------~e~~~~ir~~~--~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
.|.|+++...|+.+| ++-++.+|+.. ...+.|++ +++.-+.+...++.++|++.+.
T Consensus 132 ~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~-v~GGI~~~~~~~~~~~Gad~vv 196 (220)
T 2fli_A 132 VDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIE-VDGGVDNKTIRACYEAGANVFV 196 (220)
T ss_dssp CSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEE-EESSCCTTTHHHHHHHTCCEEE
T ss_pred CCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEE-EECcCCHHHHHHHHHcCCCEEE
Confidence 688888777676544 23455565431 01256765 4555557777788999998864
No 205
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=58.47 E-value=20 Score=30.91 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=30.8
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHhhcCCEEEEEcC---H----HHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 93 ELHVLAVDDSY---VDRKLIERLLQISSCKVTAVES---G----TRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 93 ~~~ILvVdD~~---~~~~~l~~~L~~~g~~v~~a~~---g----~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
+.+|++||-|+ .....+...-...|..+..+.. . .++++.+ ....+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~-----------~~~~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA-----------KLKFYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH-----------HHTTCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH-----------HhCCCCEEEEEC
Confidence 67899999885 2233333333445666655432 2 2334443 223689999998
No 206
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=58.41 E-value=32 Score=26.42 Aligned_cols=40 Identities=18% Similarity=0.314 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
..++++.+++. ..+|+++...-.+.+....++++|++.+.
T Consensus 65 ~~~~i~~i~~~---~~ipvi~~g~i~~~~~~~~~~~~Gad~V~ 104 (253)
T 1h5y_A 65 FIDSVKRVAEA---VSIPVLVGGGVRSLEDATTLFRAGADKVS 104 (253)
T ss_dssp HHHHHHHHHHH---CSSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred cHHHHHHHHHh---cCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 46778888875 36899988888888888999999998765
No 207
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=58.19 E-value=69 Score=25.49 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=40.9
Q ss_pred CceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 147 LKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 147 ~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..+|.|++|+.-...+--.+...++... ....++++=+...+..+..++++.|+++.+.
T Consensus 38 ~GaD~v~lDlE~~~~~~~~~~~~~~a~~-~~~~~~~VRv~~~~~~~i~~~l~~g~~~I~~ 96 (267)
T 2vws_A 38 SGYDWLLIDGEHAPNTIQDLYHQLQAVA-PYASQPVIRPVEGSKPLIKQVLDIGAQTLLI 96 (267)
T ss_dssp TCCSEEEEETTTSCCCHHHHHHHHHHHT-TSSSEEEEECSSCCHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHHHH-hCCCcEEEEeCCCCHHHHHHHHHhCCCEEEe
Confidence 4689999999776556555555555432 2345666655566788899999999987654
No 208
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=58.11 E-value=54 Score=26.82 Aligned_cols=41 Identities=17% Similarity=0.333 Sum_probs=31.0
Q ss_pred HHHHHHHHHhcCCCCCCcEE--EEecCCCHHHHHHHHHcCCCeeee
Q 048660 163 GYELLKKIKESSVFREVPVV--IMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII--~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+++++++++. .++|++ +-.+-.+.++..+++++|+++++.
T Consensus 195 ~~~ll~~i~~~---~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlV 237 (297)
T 4adt_A 195 PIDLILLTRKL---KRLPVVNFAAGGIATPADAAMCMQLGMDGVFV 237 (297)
T ss_dssp CHHHHHHHHHH---TSCSSEEEEESCCCSHHHHHHHHHTTCSCEEE
T ss_pred CHHHHHHHHHh---cCCCeEEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 36778888775 246776 455566889999999999999874
No 209
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=58.04 E-value=27 Score=30.81 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=42.4
Q ss_pred ceeEEEEeCCCCCCCH-HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 148 KVNLIITDYTMPGMTG-YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~dlil~D~~mp~~~G-~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..|+|.+|...+...+ +++++++++. ++++||++- .-...+....+.++|++.+..
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~--~~~~~vi~g-~v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAK--YPSLNIIAG-NVATAEATKALIEAGANVVKV 324 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHH--CTTSEEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred ccceEEecccccchhhhhhHHHHHHHh--CCCceEEee-eeccHHHHHHHHHhCCCEEEE
Confidence 5789999988776544 4689999987 567787753 344678889999999987753
No 210
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=57.96 E-value=57 Score=24.45 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=46.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC--KVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
..+|..+|-++......+..++..|. .+. ...+..+.+..+...+ ....||+|++|.. ..+-..+++.
T Consensus 94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~-------~~~~~D~v~~d~~--~~~~~~~l~~ 164 (229)
T 2avd_A 94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAG-------EAGTFDVAVVDAD--KENCSAYYER 164 (229)
T ss_dssp TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT-------CTTCEEEEEECSC--STTHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcC-------CCCCccEEEECCC--HHHHHHHHHH
Confidence 56899999999999999999887764 343 4567666655442110 0147999999864 2233445555
Q ss_pred HHh
Q 048660 170 IKE 172 (213)
Q Consensus 170 ir~ 172 (213)
+.+
T Consensus 165 ~~~ 167 (229)
T 2avd_A 165 CLQ 167 (229)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 211
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=57.81 E-value=31 Score=26.45 Aligned_cols=41 Identities=17% Similarity=0.398 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.++.++.+++. .++||++-.+-...++..+++++|+++++.
T Consensus 186 ~~~~i~~l~~~---~~~pvia~GGi~~~~~~~~~~~~Ga~~v~v 226 (253)
T 1h5y_A 186 DVELIRRVADS---VRIPVIASGGAGRVEHFYEAAAAGADAVLA 226 (253)
T ss_dssp CHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCcHHHH
Confidence 46788888875 378999888887778899999999998753
No 212
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=57.42 E-value=62 Score=27.24 Aligned_cols=56 Identities=9% Similarity=0.165 Sum_probs=38.5
Q ss_pred ceeEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 148 KVNLIITDYTMPGM-TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~dlil~D~~mp~~-~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+|+|.+|..-... .-.+.++++++. .+.++||+-+ -.+.+....+.++|+|....
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~--~p~v~Vi~G~-v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAA--YPHLEIIGGN-VATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHH--CTTCEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHh--cCCCceEeee-eCCHHHHHHHHHcCCCEEEE
Confidence 57899998743222 234667888876 4677877532 24577888899999987765
No 213
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=56.99 E-value=57 Score=25.28 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=50.0
Q ss_pred ccEEEEEeCC------HHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH
Q 048660 93 ELHVLAVDDS------YVDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG 163 (213)
Q Consensus 93 ~~~ILvVdD~------~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G 163 (213)
..+|++|+-. ..+...+.+.|++.|+.+... .+..+.++. .|.|++ |+.+-
T Consensus 31 ~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~~----------------ad~I~l----pGG~~ 90 (229)
T 1fy2_A 31 RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEK----------------AEIIIV----GGGNT 90 (229)
T ss_dssp CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHHH----------------CSEEEE----CCSCH
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHhc----------------CCEEEE----CCCcH
Confidence 4689999743 366777888899999988877 443344432 467776 78888
Q ss_pred HHHHHHHHhcCC--------CCCCcEEEEec
Q 048660 164 YELLKKIKESSV--------FREVPVVIMSS 186 (213)
Q Consensus 164 ~e~~~~ir~~~~--------~~~~pII~lt~ 186 (213)
..+++.+++..- ....|++-.++
T Consensus 91 ~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sA 121 (229)
T 1fy2_A 91 FQLLKESRERGLLAPMADRVKRGALYIGWSA 121 (229)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCEEEEETH
T ss_pred HHHHHHHHHCChHHHHHHHHHcCCEEEEECH
Confidence 888888875321 13467776664
No 214
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=56.75 E-value=9.5 Score=29.37 Aligned_cols=54 Identities=19% Similarity=0.374 Sum_probs=40.9
Q ss_pred CCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 146 ALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 146 ~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..+||++ . -||+.-- ++++++++. ..+|||+=..-.+.++...++++||+..-+
T Consensus 125 ~~~PD~i--E-iLPGi~p-~iI~~i~~~---~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 125 KVQPDCI--E-LLPGIIP-EQVQKMTQK---LHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHCCSEE--E-EECTTCH-HHHHHHHHH---HCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred hcCCCEE--E-ECCchhH-HHHHHHHHh---cCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 3467876 2 3577543 788999875 478998777778899999999999987643
No 215
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=56.53 E-value=60 Score=24.25 Aligned_cols=92 Identities=13% Similarity=0.069 Sum_probs=54.8
Q ss_pred hhcccCCCcchhhhhhhhcCCccEEEEEeCCHHHHHHHHHHHhhcCCE--E-EEEcCHHHHHHHhhhcCCCCCCCCCCCc
Q 048660 72 FKETNRGFPFWAMATVAECSKELHVLAVDDSYVDRKLIERLLQISSCK--V-TAVESGTRALQYLGLDGEQSNVGFDALK 148 (213)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~g~~--v-~~a~~g~eal~~l~~~~~~~~~~~~~~~ 148 (213)
.-+.+-|.......-........+|..+|-++...+..+..++..|.. + ....+..+.+..+.... ....
T Consensus 68 vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-------~~~~ 140 (225)
T 3tr6_A 68 VIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAG-------QAWQ 140 (225)
T ss_dssp EEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTT-------CTTC
T ss_pred EEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhcc-------CCCC
Confidence 344455544333332222223578999999999999999999877752 4 34567767665542100 1157
Q ss_pred eeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 149 VNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 149 ~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
||+|++|...+ +-..+++.+.+
T Consensus 141 fD~v~~~~~~~--~~~~~l~~~~~ 162 (225)
T 3tr6_A 141 YDLIYIDADKA--NTDLYYEESLK 162 (225)
T ss_dssp EEEEEECSCGG--GHHHHHHHHHH
T ss_pred ccEEEECCCHH--HHHHHHHHHHH
Confidence 99999987422 23345555543
No 216
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=56.41 E-value=86 Score=26.08 Aligned_cols=105 Identities=9% Similarity=0.066 Sum_probs=64.9
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHhhc-CCEE--EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-----
Q 048660 93 ELHVLAVD----DSYVDRKLIERLLQIS-SCKV--TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG----- 160 (213)
Q Consensus 93 ~~~ILvVd----D~~~~~~~l~~~L~~~-g~~v--~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~----- 160 (213)
+..++.++ +.....+.++.+-+.+ +..+ ..+.+.++|....+ .-.|.|.+.. -++
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~------------aGaD~I~v~~-g~G~~~~~ 198 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELIL------------SGADIIKVGI-GPGSVCTT 198 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHH------------TTCSEEEECS-SCSTTBCH
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHH------------hCCCEEEECC-CCCcCcCc
Confidence 45677675 3344455565555554 4443 35778888887763 1367776642 121
Q ss_pred -------CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee-eeCCCC
Q 048660 161 -------MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY-IVKPVK 210 (213)
Q Consensus 161 -------~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~-L~KP~~ 210 (213)
...+.++..+.+......+|||+-.+-.+..+..+++.+||+.. +-+||-
T Consensus 199 r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~fl 256 (351)
T 2c6q_A 199 RKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLA 256 (351)
T ss_dssp HHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTT
T ss_pred cccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHHh
Confidence 12344445554321123689998889999999999999999985 556653
No 217
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=56.28 E-value=25 Score=32.09 Aligned_cols=88 Identities=14% Similarity=0.144 Sum_probs=54.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEe--CCCCCCCH------
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITD--YTMPGMTG------ 163 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D--~~mp~~~G------ 163 (213)
.+.+|+|+|....+...+.+.|.+.|+.+........ . ....+|.||+- -..|...+
T Consensus 445 ~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~----~-----------~~~~~DgIIlsGGPg~p~d~~~p~i~~ 509 (645)
T 3r75_A 445 SGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA----V-----------DLARYDVVVMGPGPGDPSDAGDPRIAR 509 (645)
T ss_dssp TTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC----C-----------CGGGCSEEEECCCSSCTTCTTSHHHHH
T ss_pred CCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc----c-----------cccCCCEEEECCCCCChhhhhhhhHHH
Confidence 4678999999988999999999999998877644321 1 22357888772 12233233
Q ss_pred -HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCC
Q 048660 164 -YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAE 202 (213)
Q Consensus 164 -~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~ 202 (213)
.++++.+.+ .++||+.+.- ....-+...|..
T Consensus 510 ~~~lI~~a~~----~~iPiLGICl----G~QlLa~alGG~ 541 (645)
T 3r75_A 510 LYAWLRHLID----EGKPFMAVCL----SHQILNAILGIP 541 (645)
T ss_dssp HHHHHHHHHH----HTCCEEEETH----HHHHHHHHTTCC
T ss_pred HHHHHHHHHH----CCCCEEEECH----HHHHHHHHhCCE
Confidence 233444433 2678887763 333334445543
No 218
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=55.47 E-value=64 Score=24.81 Aligned_cols=98 Identities=11% Similarity=0.062 Sum_probs=50.1
Q ss_pred CccEEEEEeCC--HHH-HHHHHHHHhhcCCEE-E-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC-----
Q 048660 92 KELHVLAVDDS--YVD-RKLIERLLQISSCKV-T-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM----- 161 (213)
Q Consensus 92 ~~~~ILvVdD~--~~~-~~~l~~~L~~~g~~v-~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~----- 161 (213)
.+.++++.+.+ ... ...+..++ ..+.+- . ...+..+.++.+. ....-+|++|-..++.
T Consensus 36 ~g~~~~~~~~~~~~~~~~~~~~~l~-~~~vdgiIi~~~~~~~~~~~l~-----------~~~iPvV~i~~~~~~~~~~~V 103 (276)
T 3jy6_A 36 RGYIGVLFDANADIEREKTLLRAIG-SRGFDGLILQSFSNPQTVQEIL-----------HQQMPVVSVDREMDACPWPQV 103 (276)
T ss_dssp TTCEEEEEECTTCHHHHHHHHHHHH-TTTCSEEEEESSCCHHHHHHHH-----------TTSSCEEEESCCCTTCSSCEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHH-hCCCCEEEEecCCcHHHHHHHH-----------HCCCCEEEEecccCCCCCCEE
Confidence 35677776533 322 23344433 334322 2 2222256666663 2234577777765532
Q ss_pred --C----HHHHHHHHHhcCCCCCCcEEEEecCCC--H--HHHHHHHHcCCCee
Q 048660 162 --T----GYELLKKIKESSVFREVPVVIMSSEDV--L--TQIDSCLEEGAEEY 204 (213)
Q Consensus 162 --~----G~e~~~~ir~~~~~~~~pII~lt~~~~--~--~~~~~~~~~G~~~~ 204 (213)
| |..+++.|.+. ....|.++++... . ..+.+++...+..+
T Consensus 104 ~~D~~~~g~~a~~~L~~~---G~~~I~~i~~~~~~~~~~~~R~~gf~~~l~~~ 153 (276)
T 3jy6_A 104 VTDNFEAAKAATTAFRQQ---GYQHVVVLTSELELSRTRQERYRGILAAAQDV 153 (276)
T ss_dssp ECCHHHHHHHHHHHHHTT---TCCEEEEEEECSTTCHHHHHHHHHHHTTCSEE
T ss_pred EEChHHHHHHHHHHHHHc---CCCeEEEEecCCCCCchHHHHHHHHHHHHHhC
Confidence 2 66677777764 3446777776553 2 34555565555443
No 219
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=55.44 E-value=37 Score=26.34 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=32.7
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.++.++.+++. ..+|+++-.+-.+.++...++++|++..+.
T Consensus 62 ~~~~i~~i~~~---~~ipvi~~ggI~~~~~~~~~~~~Gad~V~l 102 (253)
T 1thf_D 62 MLELVEKVAEQ---IDIPFTVGGGIHDFETASELILRGADKVSI 102 (253)
T ss_dssp HHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 35667777763 478999988888889999999999988654
No 220
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=55.29 E-value=20 Score=29.30 Aligned_cols=93 Identities=15% Similarity=0.111 Sum_probs=54.2
Q ss_pred EEEEeCCHHH----HHHHHHHHhhcCC---EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 96 VLAVDDSYVD----RKLIERLLQISSC---KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 96 ILvVdD~~~~----~~~l~~~L~~~g~---~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
|||-|++-.. ...++..-+..++ ..+.+.+.+++.+.++. ..|+|.+|-. +.-+-.++.+
T Consensus 166 vlikdnHi~~~G~i~~av~~ar~~~~~~~~I~VEV~tleea~eA~~a------------GaD~I~LDn~-~~e~l~~av~ 232 (285)
T 1o4u_A 166 VMIKDNHLKMYGSAERAVQEVRKIIPFTTKIEVEVENLEDALRAVEA------------GADIVMLDNL-SPEEVKDISR 232 (285)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHTTSCTTSCEEEEESSHHHHHHHHHT------------TCSEEEEESC-CHHHHHHHHH
T ss_pred EEEchhHHhhcCCHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc------------CCCEEEECCC-CHHHHHHHHH
Confidence 5555554432 2233333333443 34467889999988742 4689999963 2212223444
Q ss_pred HHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 169 KIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
.++.. .++++ +..++.-+.+......+.|+|.+
T Consensus 233 ~l~~~--~~~v~-ieASGGIt~eni~~~a~tGVD~I 265 (285)
T 1o4u_A 233 RIKDI--NPNVI-VEVSGGITEENVSLYDFETVDVI 265 (285)
T ss_dssp HHHHH--CTTSE-EEEEECCCTTTGGGGCCTTCCEE
T ss_pred Hhhcc--CCCce-EEEECCCCHHHHHHHHHcCCCEE
Confidence 45443 23555 45667667777888889998765
No 221
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=55.28 E-value=70 Score=24.67 Aligned_cols=91 Identities=16% Similarity=0.185 Sum_probs=55.7
Q ss_pred hhhcccCCCcchhhhhhhhcCCccEEEEEeCCHHHHHHHHHHHhhcCCE--EE-EEcCHHHHHHHhhhcCCCCCCCCCCC
Q 048660 71 KFKETNRGFPFWAMATVAECSKELHVLAVDDSYVDRKLIERLLQISSCK--VT-AVESGTRALQYLGLDGEQSNVGFDAL 147 (213)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~g~~--v~-~a~~g~eal~~l~~~~~~~~~~~~~~ 147 (213)
..-+.+-|.......-........+|..+|-++......+..+...|.. +. ...+..+.+..+. ...
T Consensus 66 ~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~----------~~~ 135 (248)
T 3tfw_A 66 RILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG----------ECP 135 (248)
T ss_dssp EEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC----------SCC
T ss_pred EEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC----------CCC
Confidence 3444455544333322222222579999999999999999999877753 43 4566666554431 224
Q ss_pred ceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 148 KVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 148 ~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.||+|++|...+ +-..+++.+.+.
T Consensus 136 ~fD~V~~d~~~~--~~~~~l~~~~~~ 159 (248)
T 3tfw_A 136 AFDLIFIDADKP--NNPHYLRWALRY 159 (248)
T ss_dssp CCSEEEECSCGG--GHHHHHHHHHHT
T ss_pred CeEEEEECCchH--HHHHHHHHHHHh
Confidence 799999997432 334456666553
No 222
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=55.08 E-value=35 Score=26.53 Aligned_cols=40 Identities=10% Similarity=0.281 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
-+++++.+++. ..+|+++-.+-.+.++..++++.|++..+
T Consensus 67 ~~~~i~~i~~~---~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ 106 (247)
T 3tdn_A 67 DTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLRGADKVS 106 (247)
T ss_dssp CHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHTTCSEEC
T ss_pred cHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCeee
Confidence 36888999875 37899998888889999999999998764
No 223
>3hvb_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; 2.99A {Pseudomonas aeruginosa PAO1}
Probab=54.90 E-value=39 Score=28.64 Aligned_cols=93 Identities=16% Similarity=0.234 Sum_probs=59.6
Q ss_pred HHHHHhhcCCEEE--EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC-CC---CHHHHHHHHHhcCCCCCCcEE
Q 048660 109 IERLLQISSCKVT--AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP-GM---TGYELLKKIKESSVFREVPVV 182 (213)
Q Consensus 109 l~~~L~~~g~~v~--~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp-~~---~G~e~~~~ir~~~~~~~~pII 182 (213)
.-..|++.|+.+. -+..|...+..+ ...++|.|=+|-..= ++ ....+++.+-.....-...+|
T Consensus 327 ~l~~l~~~G~~ialDDfG~g~ssl~~L-----------~~l~~d~iKiD~~~i~~~~~~~~~~~~~~~i~~~~~~~~~vi 395 (437)
T 3hvb_A 327 LTQGLATLHCQAAISQFGCSLNPFNAL-----------KHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLSI 395 (437)
T ss_dssp HHHHHHHTTCEEEEEEETCSSSHHHHH-----------TTSCCSEEEECGGGSSCCSSHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHCCCEEEEcCCCCCccHHHHH-----------hhCCCCEEEECHHHHHhHhhCcHHHHHHHHHHHHHHcCCCEE
Confidence 3445677898664 567787888888 556799999995331 11 222344444322112344444
Q ss_pred EEecCCCHHHHHHHHHcCCCe----eeeCCCCCCC
Q 048660 183 IMSSEDVLTQIDSCLEEGAEE----YIVKPVKLSD 213 (213)
Q Consensus 183 ~lt~~~~~~~~~~~~~~G~~~----~L~KP~~~~e 213 (213)
..+-.+.+....+.+.|++- |+.||...++
T Consensus 396 -aegVEt~~~~~~l~~~G~~~~QG~~~~~P~~~~~ 429 (437)
T 3hvb_A 396 -VPFVESASVLATLWQAGATYIQGYYLQGPSQAMD 429 (437)
T ss_dssp -ECCCCSHHHHHHHHHHTCSEEECTTTCCCBSSCC
T ss_pred -eeeeCCHHHHHHHHHcCCCEeccccCCCCCcccc
Confidence 57788888999999999864 4779987654
No 224
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=54.73 E-value=68 Score=24.40 Aligned_cols=93 Identities=13% Similarity=0.077 Sum_probs=54.2
Q ss_pred hhhcccCCCcchhhhhhhhcCCccEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EEcCHHHHHHHhhhcCCCCCCCCCCC
Q 048660 71 KFKETNRGFPFWAMATVAECSKELHVLAVDDSYVDRKLIERLLQISSC--KVT-AVESGTRALQYLGLDGEQSNVGFDAL 147 (213)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~l~~~~~~~~~~~~~~ 147 (213)
..-+.+.|.......-........+|..+|-++......+..++..|. .+. ...+..+.+..+.... ...
T Consensus 75 ~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~-------~~~ 147 (232)
T 3cbg_A 75 QVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGK-------PLP 147 (232)
T ss_dssp EEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSS-------SCC
T ss_pred EEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcC-------CCC
Confidence 334445554333322222222256899999999999999998887765 243 4567666665542100 014
Q ss_pred ceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 148 KVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 148 ~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
.||+|++|...+ +-..+++.+.+
T Consensus 148 ~fD~V~~d~~~~--~~~~~l~~~~~ 170 (232)
T 3cbg_A 148 EFDLIFIDADKR--NYPRYYEIGLN 170 (232)
T ss_dssp CEEEEEECSCGG--GHHHHHHHHHH
T ss_pred CcCEEEECCCHH--HHHHHHHHHHH
Confidence 799999997522 23345555544
No 225
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=54.34 E-value=74 Score=24.66 Aligned_cols=73 Identities=14% Similarity=0.093 Sum_probs=48.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC--KVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
..+|..+|-++......+..++..|. .+. ...+..+.+..+...+ .....||+|++|.... +-..+++.
T Consensus 104 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~------~~~~~fD~V~~d~~~~--~~~~~l~~ 175 (247)
T 1sui_A 104 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDE------KNHGSYDFIFVDADKD--NYLNYHKR 175 (247)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSG------GGTTCBSEEEECSCST--THHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhcc------CCCCCEEEEEEcCchH--HHHHHHHH
Confidence 56899999999999999999988776 343 4567776665442100 0024799999997533 34455555
Q ss_pred HHhc
Q 048660 170 IKES 173 (213)
Q Consensus 170 ir~~ 173 (213)
+.+.
T Consensus 176 ~~~~ 179 (247)
T 1sui_A 176 LIDL 179 (247)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 226
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=54.24 E-value=4.9 Score=30.49 Aligned_cols=31 Identities=10% Similarity=0.011 Sum_probs=25.1
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcCH
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESG 126 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g 126 (213)
|+|||.....-..+.++|++.|+.+..+...
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~ 34 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRND 34 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETT
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCC
Confidence 9999977666677888999999988877654
No 227
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=53.98 E-value=26 Score=27.14 Aligned_cols=53 Identities=25% Similarity=0.422 Sum_probs=39.7
Q ss_pred EEEEeCCCCCC---CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHc---CCCeeee
Q 048660 151 LIITDYTMPGM---TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEE---GAEEYIV 206 (213)
Q Consensus 151 lil~D~~mp~~---~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~---G~~~~L~ 206 (213)
+++++..-.++ -.++.++++++. .++|||+-.+-.+.++..++++. |+++++.
T Consensus 166 i~~~~~~~~~~~~g~~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~v 224 (244)
T 2y88_A 166 FVVTDITKDGTLGGPNLDLLAGVADR---TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIV 224 (244)
T ss_dssp EEEEETTTTTTTSCCCHHHHHHHHTT---CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred EEEEecCCccccCCCCHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEE
Confidence 55677654322 257788888864 47899998888888999999998 9988753
No 228
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=53.96 E-value=18 Score=27.87 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=36.8
Q ss_pred ceeEEEEeCCCCCCC-------HHHHHHHHHhcCC--CCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 148 KVNLIITDYTMPGMT-------GYELLKKIKESSV--FREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~dlil~D~~mp~~~-------G~e~~~~ir~~~~--~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..|.|+++...|+.+ +++.++++|+... ..++|+++ ++.-+.+...++.++|++.+..
T Consensus 140 ~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v-~GGI~~~n~~~~~~aGad~vvv 206 (230)
T 1rpx_A 140 AVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEV-DGGVGPKNAYKVIEAGANALVA 206 (230)
T ss_dssp TCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEE-ESSCCTTTHHHHHHHTCCEEEE
T ss_pred hCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEE-ECCCCHHHHHHHHHcCCCEEEE
Confidence 368888887776543 3455566665310 12567664 5544567777789999988753
No 229
>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A
Probab=53.44 E-value=55 Score=26.24 Aligned_cols=92 Identities=16% Similarity=0.234 Sum_probs=61.6
Q ss_pred eCCHHHHHHHHHHHhh-cCCEEEE------EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC-CCCHHHHHHHHH
Q 048660 100 DDSYVDRKLIERLLQI-SSCKVTA------VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP-GMTGYELLKKIK 171 (213)
Q Consensus 100 dD~~~~~~~l~~~L~~-~g~~v~~------a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp-~~~G~e~~~~ir 171 (213)
+|.......++++++. .|..++. +.|..+|++.+.. ..++=||+.=.-+ -.+|++.++++.
T Consensus 97 ~dg~iD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~ale~L~~-----------lG~~rILTSG~~~~a~~g~~~L~~Lv 165 (256)
T 1twd_A 97 VDGNVDMPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAE-----------LGIARVLTSGQKSDALQGLSKIMELI 165 (256)
T ss_dssp TTSSBCHHHHHHHHHHHTTSEEEECGGGGGCSCHHHHHHHHHH-----------HTCCEEEECTTSSSTTTTHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEECchhccCCHHHHHHHHHH-----------cCCCEEECCCCCCCHHHHHHHHHHHH
Confidence 4555666777777754 3666665 5788999998843 3477788875544 378999999998
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
+.. . -..|+..+--..+........|+..|-
T Consensus 166 ~~a--~-~i~Im~GgGv~~~Ni~~l~~tGv~e~H 196 (256)
T 1twd_A 166 AHR--D-APIIMAGAGVRAENLHHFLDAGVLEVH 196 (256)
T ss_dssp TSS--S-CCEEEEESSCCTTTHHHHHHHTCSEEE
T ss_pred Hhh--C-CcEEEecCCcCHHHHHHHHHcCCCeEe
Confidence 752 2 234444444555556666688998876
No 230
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=53.07 E-value=23 Score=26.28 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhcCCEEE---EEcCHHHHHH-HhhhcCCCCCCCCCCCceeEEEEeCCC
Q 048660 103 YVDRKLIERLLQISSCKVT---AVESGTRALQ-YLGLDGEQSNVGFDALKVNLIITDYTM 158 (213)
Q Consensus 103 ~~~~~~l~~~L~~~g~~v~---~a~~g~eal~-~l~~~~~~~~~~~~~~~~dlil~D~~m 158 (213)
..+...|...|.++|+.|. ++.|..+.+. .+..+. ....+|+||+-=.+
T Consensus 39 D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~-------a~~~~DlVittGG~ 91 (178)
T 3iwt_A 39 DESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDAL-------SIDEVDVIISTGGT 91 (178)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHH-------TCTTCCEEEEESCC
T ss_pred cchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH-------hcCCCCEEEecCCc
Confidence 4567889999999999764 4556544443 332111 33468999987655
No 231
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=52.75 E-value=75 Score=25.48 Aligned_cols=84 Identities=12% Similarity=0.073 Sum_probs=50.1
Q ss_pred EEEEE-eCCHHH---HHHHHHHHhhcCCEEEEE-------cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH
Q 048660 95 HVLAV-DDSYVD---RKLIERLLQISSCKVTAV-------ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG 163 (213)
Q Consensus 95 ~ILvV-dD~~~~---~~~l~~~L~~~g~~v~~a-------~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G 163 (213)
+|.++ +|+..- .+.++..|++.|..+... .+....++.+. ...+|+|++.. .+.+.
T Consensus 141 ~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~-----------~~~~d~v~~~~--~~~~a 207 (368)
T 4eyg_A 141 KVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMK-----------DAKPDAMFVFV--PAGQG 207 (368)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHH-----------HHCCSEEEEEC--CTTCH
T ss_pred EEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHH-----------hcCCCEEEEec--cchHH
Confidence 45444 555443 345666777888765432 25566666663 23689999865 34478
Q ss_pred HHHHHHHHhcCCCCC-CcEEEEecCCCHH
Q 048660 164 YELLKKIKESSVFRE-VPVVIMSSEDVLT 191 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~-~pII~lt~~~~~~ 191 (213)
..+++.+++.+.... +|++......+..
T Consensus 208 ~~~~~~~~~~g~~~~~v~~~~~~~~~~~~ 236 (368)
T 4eyg_A 208 GNFMKQFAERGLDKSGIKVIGPGDVMDDD 236 (368)
T ss_dssp HHHHHHHHHTTGGGTTCEEEEETTTTCHH
T ss_pred HHHHHHHHHcCCCcCCceEEecCcccCHH
Confidence 889999987643323 6666554334433
No 232
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=52.68 E-value=23 Score=27.82 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=51.3
Q ss_pred HHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC-------HHHHHHHHHhcCC--CCC
Q 048660 108 LIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT-------GYELLKKIKESSV--FRE 178 (213)
Q Consensus 108 ~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~-------G~e~~~~ir~~~~--~~~ 178 (213)
.+.+.+++.|..+..+-+...-++.++.. . ...|+|++=..-|+.+ .++-++++|+... ..+
T Consensus 97 ~~i~~i~~~G~k~gv~lnp~tp~~~~~~~--------l-~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~ 167 (231)
T 3ctl_A 97 RLIDEIRRHDMKVGLILNPETPVEAMKYY--------I-HKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLE 167 (231)
T ss_dssp HHHHHHHHTTCEEEEEECTTCCGGGGTTT--------G-GGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCeEEEEEECCCcHHHHHHH--------H-hcCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCC
Confidence 34444555677666554433333332111 1 2467776544446543 3555566665311 124
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeeeeC
Q 048660 179 VPVVIMSSEDVLTQIDSCLEEGAEEYIVK 207 (213)
Q Consensus 179 ~pII~lt~~~~~~~~~~~~~~G~~~~L~K 207 (213)
++ |.+.+.-+.+....+.++|+|.++.-
T Consensus 168 ~~-I~VdGGI~~~~~~~~~~aGAd~~V~G 195 (231)
T 3ctl_A 168 YE-IEVDGSCNQATYEKLMAAGADVFIVG 195 (231)
T ss_dssp CE-EEEESCCSTTTHHHHHHHTCCEEEEC
T ss_pred ce-EEEECCcCHHHHHHHHHcCCCEEEEc
Confidence 55 55777777888999999999988753
No 233
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=52.56 E-value=93 Score=25.31 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=43.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhc--C---CEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC--H
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQIS--S---CKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT--G 163 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~--g---~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~--G 163 (213)
...+|..||=++...+..++.+... | -++ ....|+.+.+.. ....||+|++|...|... +
T Consensus 131 ~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~------------~~~~fD~Ii~d~~~~~~~~~~ 198 (314)
T 2b2c_A 131 SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN------------HKNEFDVIITDSSDPVGPAES 198 (314)
T ss_dssp TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH------------CTTCEEEEEECCC--------
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh------------cCCCceEEEEcCCCCCCcchh
Confidence 3468999999999999999888653 2 233 345676665543 234799999998554221 1
Q ss_pred ---HHHHHHHHhc
Q 048660 164 ---YELLKKIKES 173 (213)
Q Consensus 164 ---~e~~~~ir~~ 173 (213)
.++++.+++.
T Consensus 199 l~t~~~l~~~~~~ 211 (314)
T 2b2c_A 199 LFGQSYYELLRDA 211 (314)
T ss_dssp -----HHHHHHHH
T ss_pred hhHHHHHHHHHhh
Confidence 3566666653
No 234
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=52.55 E-value=11 Score=30.03 Aligned_cols=97 Identities=8% Similarity=-0.040 Sum_probs=54.1
Q ss_pred EEEEEeCCHHHHHHHHHHHh---hcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC-CCCC-CCHHHHHH
Q 048660 95 HVLAVDDSYVDRKLIERLLQ---ISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY-TMPG-MTGYELLK 168 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~---~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~-~mp~-~~G~e~~~ 168 (213)
.|++.-.... ..++.++. ..|..+. .+.+.+|+...+.. ..|+|=+.- ..-. ..+++.+.
T Consensus 131 ~VlL~~~~l~--~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~------------gad~IGvn~~~l~~~~~dl~~~~ 196 (254)
T 1vc4_A 131 AALLIVALLG--ELTGAYLEEARRLGLEALVEVHTERELEIALEA------------GAEVLGINNRDLATLHINLETAP 196 (254)
T ss_dssp EEEEEHHHHG--GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHH------------TCSEEEEESBCTTTCCBCTTHHH
T ss_pred EEEECccchH--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc------------CCCEEEEccccCcCCCCCHHHHH
Confidence 4555443222 44555554 5788654 45677676555432 124443211 1100 11234444
Q ss_pred HHHhcCC--CCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 169 KIKESSV--FREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 169 ~ir~~~~--~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
++.+.-. ..++|+|+-++-.+.++..++.+ |+++++.
T Consensus 197 ~L~~~i~~~~~~~~vIAegGI~s~~dv~~l~~-Ga~gvlV 235 (254)
T 1vc4_A 197 RLGRLARKRGFGGVLVAESGYSRKEELKALEG-LFDAVLI 235 (254)
T ss_dssp HHHHHHHHTTCCSEEEEESCCCSHHHHHTTTT-TCSEEEE
T ss_pred HHHHhCccccCCCeEEEEcCCCCHHHHHHHHc-CCCEEEE
Confidence 5543210 01678999888888999999999 9999875
No 235
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=52.54 E-value=42 Score=27.19 Aligned_cols=53 Identities=19% Similarity=0.145 Sum_probs=32.0
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHhhcCCEEEEEc---CHH----HHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 93 ELHVLAVDDSY---VDRKLIERLLQISSCKVTAVE---SGT----RALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 93 ~~~ILvVdD~~---~~~~~l~~~L~~~g~~v~~a~---~g~----eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
+.+|+++|-+. .....+..+.++.|..+.... +.. ++++.+ ....||+||+|.
T Consensus 126 g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~-----------~~~~~D~ViIDT 188 (297)
T 1j8m_F 126 GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKF-----------LSEKMEIIIVDT 188 (297)
T ss_dssp TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHH-----------HHTTCSEEEEEC
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHH-----------HhCCCCEEEEeC
Confidence 56899999873 334445555555676665542 332 344443 224689999998
No 236
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=52.38 E-value=84 Score=24.74 Aligned_cols=86 Identities=9% Similarity=0.049 Sum_probs=51.9
Q ss_pred HHHHHhhcCC--EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEec
Q 048660 109 IERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 109 l~~~L~~~g~--~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~ 186 (213)
++..|+.... ......+..+.++.+ ....+|.|++|+.-...+--++-..++... ....++++=+.
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a-----------~~~gaD~v~lDlEd~p~~~~~a~~~~~~~~-~~~~~~~VRv~ 77 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVL-----------GLAGFDWLVLDGEHAPNDISTFIPQLMALK-GSASAPVVRVP 77 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHH-----------TTSCCSEEEEESSSSSCCHHHHHHHHHHTT-TCSSEEEEECS
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHH-----------HhCCCCEEEEcCCCCCCCHHHHHHHHHHHH-hCCCcEEEECC
Confidence 4455543222 233333455556665 344689999999765434334444444432 34566766666
Q ss_pred CCCHHHHHHHHHcCCCeeee
Q 048660 187 EDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 187 ~~~~~~~~~~~~~G~~~~L~ 206 (213)
..+......+++.|+++.+.
T Consensus 78 ~~~~~~i~~~l~~g~~gI~~ 97 (256)
T 1dxe_A 78 TNEPVIIKRLLDIGFYNFLI 97 (256)
T ss_dssp SSCHHHHHHHHHTTCCEEEE
T ss_pred CCCHHHHHHHHhcCCceeee
Confidence 77778889999999988654
No 237
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=52.34 E-value=25 Score=29.41 Aligned_cols=41 Identities=5% Similarity=-0.099 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
++.++++++.- ..++|||...+-.+.++..+++.+||+.+.
T Consensus 262 ~~~v~~i~~~~-~~~ipIIg~GGI~s~~da~~~l~aGAd~V~ 302 (345)
T 3oix_A 262 LANVHAFYKRL-NPSIQIIGTGGVXTGRDAFEHILCGASMVQ 302 (345)
T ss_dssp HHHHHHHHTTS-CTTSEEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHc-CCCCcEEEECCCCChHHHHHHHHhCCCEEE
Confidence 57788888752 237999999999999999999999998763
No 238
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=51.95 E-value=1.2e+02 Score=26.42 Aligned_cols=90 Identities=13% Similarity=0.118 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhc-CCEEE--EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC--------------CCCCCCHHHHH
Q 048660 105 DRKLIERLLQIS-SCKVT--AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY--------------TMPGMTGYELL 167 (213)
Q Consensus 105 ~~~~l~~~L~~~-g~~v~--~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~--------------~mp~~~G~e~~ 167 (213)
..+.++.+-+.. +.-+. .+.+.++|....+. ..|.|.+.. .+|....+..+
T Consensus 283 ~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a------------Gad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~ 350 (514)
T 1jcn_A 283 QIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA------------GVDGLRVGMGCGSICITQEVMACGRPQGTAVYKV 350 (514)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH------------TCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEecccchHHHHHHHHHc------------CCCEEEECCCCCcccccccccCCCccchhHHHHH
Confidence 345555555544 45444 36677766665431 245555522 12222345666
Q ss_pred HHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee-eeCCC
Q 048660 168 KKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY-IVKPV 209 (213)
Q Consensus 168 ~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~-L~KP~ 209 (213)
+.+++. .++|||+-.+-.+..+..+++.+||+.. +..+|
T Consensus 351 ~~~~~~---~~ipVia~GGI~~~~di~kala~GAd~V~iG~~~ 390 (514)
T 1jcn_A 351 AEYARR---FGVPIIADGGIQTVGHVVKALALGASTVMMGSLL 390 (514)
T ss_dssp HHHHGG---GTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHhh---CCCCEEEECCCCCHHHHHHHHHcCCCeeeECHHH
Confidence 777654 3689999888888999999999999885 44444
No 239
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=51.72 E-value=31 Score=27.58 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=45.4
Q ss_pred ceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCC
Q 048660 148 KVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVK 210 (213)
Q Consensus 148 ~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~ 210 (213)
.||++++=--.|...|-...|++.+. ..+|.|+++........ .+++....+|+.-+.+
T Consensus 64 ~pDfvI~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~K~k-d~l~~~g~GYIivk~D 122 (283)
T 1qv9_A 64 EPDFIVYGGPNPAAPGPSKAREMLAD---SEYPAVIIGDAPGLKVK-DEMEEQGLGYILVKPD 122 (283)
T ss_dssp CCSEEEEECSCTTSHHHHHHHHHHHT---SSSCEEEEEEGGGGGGH-HHHHHTTCEEEEETTS
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHh---CCCCEEEEcCCcchhhH-HHHHhcCCcEEEEecC
Confidence 68999988777888899999998864 58999999988766644 5566655688766554
No 240
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=51.65 E-value=26 Score=28.44 Aligned_cols=39 Identities=8% Similarity=-0.148 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
++.++++++. .+++|||+..+-.+.++..+++.+||+..
T Consensus 232 ~~~i~~v~~~--~~~ipvi~~GGI~~~~da~~~l~~GAd~V 270 (314)
T 2e6f_A 232 LANVNAFYRR--CPDKLVFGCGGVYSGEDAFLHILAGASMV 270 (314)
T ss_dssp HHHHHHHHHH--CTTSEEEEESSCCSHHHHHHHHHHTCSSE
T ss_pred HHHHHHHHHh--cCCCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence 6788888875 35899999999899999999999999875
No 241
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=51.64 E-value=17 Score=27.46 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=47.7
Q ss_pred HHHhhcCCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCC
Q 048660 111 RLLQISSCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDV 189 (213)
Q Consensus 111 ~~L~~~g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~ 189 (213)
...++.|..+. .+.+..++...+. ...|++-..-. ...|.+.++.+++. .+++|+++..+-.
T Consensus 98 ~~~~~~g~~vi~g~~t~~e~~~a~~------------~Gad~vk~~~~--~~~g~~~~~~l~~~--~~~~pvia~GGI~- 160 (205)
T 1wa3_A 98 QFCKEKGVFYMPGVMTPTELVKAMK------------LGHTILKLFPG--EVVGPQFVKAMKGP--FPNVKFVPTGGVN- 160 (205)
T ss_dssp HHHHHHTCEEECEECSHHHHHHHHH------------TTCCEEEETTH--HHHHHHHHHHHHTT--CTTCEEEEBSSCC-
T ss_pred HHHHHcCCcEECCcCCHHHHHHHHH------------cCCCEEEEcCc--cccCHHHHHHHHHh--CCCCcEEEcCCCC-
Confidence 33444555443 2335666666542 13455543311 12377888888864 3478888776665
Q ss_pred HHHHHHHHHcCCCeee
Q 048660 190 LTQIDSCLEEGAEEYI 205 (213)
Q Consensus 190 ~~~~~~~~~~G~~~~L 205 (213)
.+...+++.+|++.+.
T Consensus 161 ~~~~~~~~~~Ga~~v~ 176 (205)
T 1wa3_A 161 LDNVCEWFKAGVLAVG 176 (205)
T ss_dssp TTTHHHHHHHTCSCEE
T ss_pred HHHHHHHHHCCCCEEE
Confidence 6788999999998875
No 242
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=51.54 E-value=60 Score=22.80 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.++++.+++. ..+++++|+.........+-..|.+.|+.
T Consensus 42 ~~~l~~l~~~----g~~~~i~T~~~~~~~~~~l~~~gl~~~~~ 80 (162)
T 2p9j_A 42 GIGIKLLQKM----GITLAVISGRDSAPLITRLKELGVEEIYT 80 (162)
T ss_dssp HHHHHHHHTT----TCEEEEEESCCCHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHC----CCEEEEEeCCCcHHHHHHHHHcCCHhhcc
Confidence 4778888754 57899999988777777777888888764
No 243
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=51.50 E-value=58 Score=25.58 Aligned_cols=95 Identities=15% Similarity=0.193 Sum_probs=62.5
Q ss_pred eCCHHHHHHHHHHHhh-cCCEEEE------E--cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC---CCHHHHH
Q 048660 100 DDSYVDRKLIERLLQI-SSCKVTA------V--ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG---MTGYELL 167 (213)
Q Consensus 100 dD~~~~~~~l~~~L~~-~g~~v~~------a--~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~---~~G~e~~ 167 (213)
+|.......++++++. .|..++. + .|..+|++.+. ...++=||+.=.-+. .+|++.+
T Consensus 100 ~dg~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~-----------~lGv~rILTSG~~~~~~a~~g~~~L 168 (224)
T 2bdq_A 100 SNNHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLV-----------ALGFTRILLHGSSNGEPIIENIKHI 168 (224)
T ss_dssp TTSSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHH-----------HTTCCEEEECSCSSCCCGGGGHHHH
T ss_pred CCCCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHH-----------HcCCCEEECCCCCCCCcHHHHHHHH
Confidence 4556667777777754 3566654 4 78889999884 335788998765554 7899999
Q ss_pred HHHHhcCCCCCCcEEEEecCCCHHHHHHHH-HcCCCeeeeC
Q 048660 168 KKIKESSVFREVPVVIMSSEDVLTQIDSCL-EEGAEEYIVK 207 (213)
Q Consensus 168 ~~ir~~~~~~~~pII~lt~~~~~~~~~~~~-~~G~~~~L~K 207 (213)
+++.+.. ..-..|+..+--..+...... ..|+..|-..
T Consensus 169 ~~Lv~~a--~~ri~Im~GgGV~~~Ni~~l~~~tGv~e~H~s 207 (224)
T 2bdq_A 169 KALVEYA--NNRIEIMVGGGVTAENYQYICQETGVKQAHGT 207 (224)
T ss_dssp HHHHHHH--TTSSEEEECSSCCTTTHHHHHHHHTCCEEEET
T ss_pred HHHHHhh--CCCeEEEeCCCCCHHHHHHHHHhhCCCEEccc
Confidence 9887642 222345454555555666665 6799887543
No 244
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=51.44 E-value=57 Score=25.89 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+.++++|+. .++||++=.+-.+.+...+++.+|+|+++.
T Consensus 194 ~~~i~~lr~~---~~~pi~vggGI~t~e~~~~~~~agAD~vVV 233 (268)
T 1qop_A 194 HHLIEKLKEY---HAAPALQGFGISSPEQVSAAVRAGAAGAIS 233 (268)
T ss_dssp HHHHHHHHHT---TCCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHhc---cCCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 6788999875 368877655555688899989999999864
No 245
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=51.20 E-value=64 Score=23.94 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=44.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC---EEEE-EcCHHHHHHHhhhcCCCCCCCCCCCc-eeEEEEeCCCCCCCHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSC---KVTA-VESGTRALQYLGLDGEQSNVGFDALK-VNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~---~v~~-a~~g~eal~~l~~~~~~~~~~~~~~~-~dlil~D~~mp~~~G~e~~~ 168 (213)
.+|..||-++...+..+..++..|. .+.. ..|..+.+..+ .... ||+|++|......+..++++
T Consensus 77 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----------~~~~~fD~I~~~~~~~~~~~~~~l~ 145 (201)
T 2ift_A 77 KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP-----------QNQPHFDVVFLDPPFHFNLAEQAIS 145 (201)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC-----------CSSCCEEEEEECCCSSSCHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh-----------ccCCCCCEEEECCCCCCccHHHHHH
Confidence 4899999999999999998887775 4443 34543332111 2347 99999986533333445677
Q ss_pred HHHh
Q 048660 169 KIKE 172 (213)
Q Consensus 169 ~ir~ 172 (213)
.+.+
T Consensus 146 ~~~~ 149 (201)
T 2ift_A 146 LLCE 149 (201)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7743
No 246
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=50.72 E-value=51 Score=26.66 Aligned_cols=92 Identities=9% Similarity=0.086 Sum_probs=43.5
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH--HH
Q 048660 92 KELHVLAVDDSYV---DRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY--EL 166 (213)
Q Consensus 92 ~~~~ILvVdD~~~---~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~--e~ 166 (213)
.+.+|++++.|.. ..+.+..+.+..|..+....+..+....+.. ...||+||+|. ++.+.. ..
T Consensus 133 ~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~----------~~~~dlvIiDT--~G~~~~~~~~ 200 (296)
T 2px0_A 133 KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL----------FSEYDHVFVDT--AGRNFKDPQY 200 (296)
T ss_dssp TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH----------GGGSSEEEEEC--CCCCTTSHHH
T ss_pred cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH----------hcCCCEEEEeC--CCCChhhHHH
Confidence 3457888887652 2333444444445444333444443333321 13689999994 554432 33
Q ss_pred HHHHHhcCC--CCCCcEEEEecCCCHHHHHH
Q 048660 167 LKKIKESSV--FREVPVVIMSSEDVLTQIDS 195 (213)
Q Consensus 167 ~~~ir~~~~--~~~~pII~lt~~~~~~~~~~ 195 (213)
+..+.+... .+.-.++++.+........+
T Consensus 201 ~~el~~~l~~~~~~~~~lVl~at~~~~~~~~ 231 (296)
T 2px0_A 201 IDELKETIPFESSIQSFLVLSATAKYEDMKH 231 (296)
T ss_dssp HHHHHHHSCCCTTEEEEEEEETTBCHHHHHH
T ss_pred HHHHHHHHhhcCCCeEEEEEECCCCHHHHHH
Confidence 444433211 12223555644444444443
No 247
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=50.43 E-value=53 Score=28.76 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=41.5
Q ss_pred CceeEEEEeCCCCCCC-HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 147 LKVNLIITDYTMPGMT-GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 147 ~~~dlil~D~~mp~~~-G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..+|+|.+|....... -.+.++.+|+. .+++||++-+- .+.+....+.++|++.+..
T Consensus 266 aG~d~v~i~~~~G~~~~~~~~i~~i~~~--~~~~pvi~~~v-~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 266 AGVDVIVLDSSQGNSVYQIAMVHYIKQK--YPHLQVIGGNV-VTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp TTCSEEEECCSCCCSHHHHHHHHHHHHH--CTTCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred cCCCEEEeeccCCcchhHHHHHHHHHHh--CCCCceEeccc-chHHHHHHHHHcCCCEEEE
Confidence 3578999988764433 35889999987 45788876332 4577889999999987644
No 248
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=50.32 E-value=18 Score=29.67 Aligned_cols=69 Identities=13% Similarity=0.104 Sum_probs=44.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc--C----CEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC---
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQIS--S----CKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT--- 162 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~--g----~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~--- 162 (213)
..+|-+||=|+.+-+..+++|... | -++ ....||.+.+ +. ....||+|++|..-|...
T Consensus 107 v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l---~~---------~~~~yDvIi~D~~dp~~~~~~ 174 (294)
T 3o4f_A 107 VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFV---NQ---------TSQTFDVIISDCTDPIGPGES 174 (294)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTT---SC---------SSCCEEEEEESCCCCCCTTCC
T ss_pred cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHH---hh---------ccccCCEEEEeCCCcCCCchh
Confidence 458999999999999999988532 1 233 3456654443 22 345799999999766432
Q ss_pred --HHHHHHHHHhc
Q 048660 163 --GYELLKKIKES 173 (213)
Q Consensus 163 --G~e~~~~ir~~ 173 (213)
..++.+.+++.
T Consensus 175 L~t~eFy~~~~~~ 187 (294)
T 3o4f_A 175 LFTSAFYEGCKRC 187 (294)
T ss_dssp SSCCHHHHHHHHT
T ss_pred hcCHHHHHHHHHH
Confidence 33556666553
No 249
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=50.12 E-value=20 Score=30.19 Aligned_cols=40 Identities=5% Similarity=-0.184 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
++.++++++. .+++|||...+-.+.++..+++.+|++.+.
T Consensus 265 ~~~i~~v~~~--~~~ipII~~GGI~s~~da~~~l~aGAd~V~ 304 (354)
T 4ef8_A 265 LANINAFYRR--CPGKLIFGCGGVYTGEDAFLHVLAGASMVQ 304 (354)
T ss_dssp HHHHHHHHHH--CTTSEEEEESCCCSHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHh--CCCCCEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 6778888876 458999999999999999999999998764
No 250
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=49.64 E-value=62 Score=26.19 Aligned_cols=68 Identities=18% Similarity=0.103 Sum_probs=42.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc-----CCEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC-----
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQIS-----SCKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM----- 161 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~-----g~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~----- 161 (213)
..+|..||-++...+..++.+... .-++ ....|+.+.+.. ....||+|++|...|..
T Consensus 119 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~------------~~~~fD~Ii~d~~~~~~~~~~l 186 (304)
T 2o07_A 119 VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ------------NQDAFDVIITDSSDPMGPAESL 186 (304)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT------------CSSCEEEEEEECC---------
T ss_pred CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh------------CCCCceEEEECCCCCCCcchhh
Confidence 468999999999999998887641 2223 345676655432 23479999999865432
Q ss_pred CHHHHHHHHHh
Q 048660 162 TGYELLKKIKE 172 (213)
Q Consensus 162 ~G~e~~~~ir~ 172 (213)
...++++.+++
T Consensus 187 ~~~~~l~~~~~ 197 (304)
T 2o07_A 187 FKESYYQLMKT 197 (304)
T ss_dssp --CHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 11345666654
No 251
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=49.60 E-value=1.1e+02 Score=25.44 Aligned_cols=86 Identities=17% Similarity=0.110 Sum_probs=56.3
Q ss_pred HHHHHHHhhcCCEEE--EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC----CC-CCCHHHHHHHHHhcCCCCCC
Q 048660 107 KLIERLLQISSCKVT--AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT----MP-GMTGYELLKKIKESSVFREV 179 (213)
Q Consensus 107 ~~l~~~L~~~g~~v~--~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~----mp-~~~G~e~~~~ir~~~~~~~~ 179 (213)
+.++.+-+..+.-+. .+.+.++|....+ ...|.|.+.-. +. ...-++++..+++.- ..++
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~------------~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~-~~~i 281 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAVQ------------HGAAGIIVSNHGARQLDYVPATIMALEEVVKAA-QGRI 281 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHHH------------TTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHT-TTSS
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHHH------------cCCCEEEECCCCCccCCCcccHHHHHHHHHHHh-CCCC
Confidence 445555555554443 3567777766552 13566666321 11 124667788887742 2379
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 180 PVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 180 pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
|||+-.+-.+..+..+++.+|++.+.
T Consensus 282 pvia~GGI~~~~D~~k~l~~GAdaV~ 307 (370)
T 1gox_A 282 PVFLDGGVRRGTDVFKALALGAAGVF 307 (370)
T ss_dssp CEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred EEEEECCCCCHHHHHHHHHcCCCEEe
Confidence 99999999999999999999999865
No 252
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=49.46 E-value=33 Score=27.79 Aligned_cols=41 Identities=10% Similarity=-0.037 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
++.++++++.- ..++|||+..+-.+.++..+++.+||+...
T Consensus 229 ~~~i~~v~~~~-~~~ipvi~~GGI~~~~da~~~l~~GAd~V~ 269 (311)
T 1jub_A 229 LANVRAFYTRL-KPEIQIIGTGGIETGQDAFEHLLCGATMLQ 269 (311)
T ss_dssp HHHHHHHHTTS-CTTSEEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHhc-CCCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 67788887642 237999999999999999999999998763
No 253
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=49.44 E-value=66 Score=28.31 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=31.2
Q ss_pred ceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 148 KVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..+.++. . ..+..-..++..+|+. . .++||+.+.+ .+.......+|++..+.
T Consensus 192 ~a~~vi~-t-~~D~~n~~~~~~ar~~--~-~~~iiar~~~--~~~~~~l~~~Gad~vi~ 243 (565)
T 4gx0_A 192 AARSIIA-N-LSDPDNANLCLTVRSL--C-QTPIIAVVKE--PVHGELLRLAGANQVVP 243 (565)
T ss_dssp GCSEEEE-C-SCHHHHHHHHHHHHTT--C-CCCEEEECSS--GGGHHHHHHHTCSEEEC
T ss_pred cCCEEEE-e-CCcHHHHHHHHHHHHh--c-CceEEEEECC--HHHHHHHHHcCCCEEEC
Confidence 5677776 2 2333334455566664 3 7788776654 34555667889986553
No 254
>4f3h_A Fimxeal, putative uncharacterized protein; fimxeal-C-DI-GMP, type IV pilus, signaling protein; HET: C2E; 2.50A {Xanthomonas campestris PV} PDB: 4f48_A*
Probab=49.43 E-value=66 Score=24.83 Aligned_cols=90 Identities=13% Similarity=0.190 Sum_probs=58.2
Q ss_pred HHHHHhhcCCEEE--EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC---C-CCC-CCHHHHHHHHHhcCCCCCCcE
Q 048660 109 IERLLQISSCKVT--AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY---T-MPG-MTGYELLKKIKESSVFREVPV 181 (213)
Q Consensus 109 l~~~L~~~g~~v~--~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~---~-mp~-~~G~e~~~~ir~~~~~~~~pI 181 (213)
.-..|++.|+.+. -+..|...+..+ ...++|.|=+|- . +.. .....+++.+......-.+.
T Consensus 148 ~l~~L~~~G~~ialDdfG~g~s~l~~L-----------~~l~~d~iKiD~~~v~~~~~~~~~~~~l~~i~~~a~~l~~~- 215 (250)
T 4f3h_A 148 FLASVSAMGCKVGLEQFGSGLDSFQLL-----------AHFQPAFLKLDRSITGDIASARESQEKIREITSRAQPTGIL- 215 (250)
T ss_dssp HHHHHHTTTCEEEEEEETSSTHHHHHH-----------TTSCCSEEEECHHHHTTTTTCSHHHHHHHHTHHHHHHHTCE-
T ss_pred HHHHHHHCCCEEEEeCCCCCchHHHHH-----------hhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcCCE-
Confidence 3445677898664 567888888888 556799999993 2 222 12444555554321112344
Q ss_pred EEEecCCCHHHHHHHHHcCCCe----eeeCCCC
Q 048660 182 VIMSSEDVLTQIDSCLEEGAEE----YIVKPVK 210 (213)
Q Consensus 182 I~lt~~~~~~~~~~~~~~G~~~----~L~KP~~ 210 (213)
++..+-.+.+....+.+.|++. |+.||..
T Consensus 216 viaeGVEt~~~~~~l~~~G~~~~QG~~~~~P~p 248 (250)
T 4f3h_A 216 TVAEFVADAQSMSSFFTAGVDYVQGDFVAPTGP 248 (250)
T ss_dssp EEECCCCCHHHHHHHHHHTCSEECSTTTCCCBS
T ss_pred EEEeccCCHHHHHHHHHcCCCEEeeccccCCCC
Confidence 4477778888999999999854 3777765
No 255
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=49.41 E-value=27 Score=26.96 Aligned_cols=85 Identities=9% Similarity=0.133 Sum_probs=53.0
Q ss_pred HHHHHHHHhhc-CCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEE---EEeCCCC----CCCHHHHHHHHHhcCCC
Q 048660 106 RKLIERLLQIS-SCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLI---ITDYTMP----GMTGYELLKKIKESSVF 176 (213)
Q Consensus 106 ~~~l~~~L~~~-g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dli---l~D~~mp----~~~G~e~~~~ir~~~~~ 176 (213)
.+.++.+-+.. +..+. .+.+.+++...... ..|.| ++.+.-. ...++++++.+++.
T Consensus 121 ~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~------------Gad~i~~~v~g~~~~~~~~~~~~~~~i~~~~~~--- 185 (234)
T 1yxy_A 121 ASFIRQVKEKYPNQLLMADISTFDEGLVAHQA------------GIDFVGTTLSGYTPYSRQEAGPDVALIEALCKA--- 185 (234)
T ss_dssp HHHHHHHHHHCTTCEEEEECSSHHHHHHHHHT------------TCSEEECTTTTSSTTSCCSSSCCHHHHHHHHHT---
T ss_pred HHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc------------CCCEEeeeccccCCCCcCCCCCCHHHHHHHHhC---
Confidence 44444444433 44443 45677777665531 34555 2322111 11246778888763
Q ss_pred CCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 177 REVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 177 ~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
++||++..+-.+.++..+++++|++.++.
T Consensus 186 -~ipvia~GGI~s~~~~~~~~~~Gad~v~v 214 (234)
T 1yxy_A 186 -GIAVIAEGKIHSPEEAKKINDLGVAGIVV 214 (234)
T ss_dssp -TCCEEEESCCCSHHHHHHHHTTCCSEEEE
T ss_pred -CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 68999888888899999999999998753
No 256
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=49.16 E-value=29 Score=29.25 Aligned_cols=41 Identities=10% Similarity=0.085 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
++.++.+++.- ..++|||+..+-.+.++..+++.+|++...
T Consensus 285 ~~~v~~i~~~v-~~~ipvI~~GGI~s~~da~~~l~~GAd~V~ 325 (367)
T 3zwt_A 285 TQTIREMYALT-QGRVPIIGVGGVSSGQDALEKIRAGASLVQ 325 (367)
T ss_dssp HHHHHHHHHHT-TTCSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHc-CCCceEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 47788888762 237999999999999999999999998764
No 257
>3hv8_A Protein FIMX; EAL phosphodiesterase, biofilm, C-DI-GMP, hydrolase; HET: C2E; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 3hv9_A 4afy_A 4ag0_A
Probab=48.85 E-value=30 Score=27.19 Aligned_cols=93 Identities=17% Similarity=0.238 Sum_probs=57.4
Q ss_pred HHHHHhhcCCEEE--EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC-CC---CHHHHHHHHHhcCCCCCCcEE
Q 048660 109 IERLLQISSCKVT--AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP-GM---TGYELLKKIKESSVFREVPVV 182 (213)
Q Consensus 109 l~~~L~~~g~~v~--~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp-~~---~G~e~~~~ir~~~~~~~~pII 182 (213)
.-..|++.|+.+. -+..|...+..+ ...++|.|=+|-.+- +. ....+++.+-.......+.+
T Consensus 158 ~l~~L~~~G~~ialDDfG~g~ssl~~L-----------~~l~~d~iKiD~~~v~~~~~~~~~~~l~~ii~~~~~~~~~v- 225 (268)
T 3hv8_A 158 LTQGLATLHCQAAISQFGCSLNPFNAL-----------KHLTVQFIKIDGSFVQDLNQVENQEILKGLIAELHEQQKLS- 225 (268)
T ss_dssp HHHHHHHTTCEEEEEEETCSSSTTGGG-----------GTCCCSEEEECGGGGSSTTSHHHHHHHHHHHHHHHHTTCEE-
T ss_pred HHHHHHHCCCEEEEeCCCCChHHHHHH-----------HhCCCCEEEECHHHHHhhhcChhHHHHHHHHHHHHHcCCCE-
Confidence 3345677898765 456666666666 455799999995432 11 22233444332211224444
Q ss_pred EEecCCCHHHHHHHHHcCCCe----eeeCCCCCCC
Q 048660 183 IMSSEDVLTQIDSCLEEGAEE----YIVKPVKLSD 213 (213)
Q Consensus 183 ~lt~~~~~~~~~~~~~~G~~~----~L~KP~~~~e 213 (213)
+..+-.+.+....+.+.|++- |+.||...++
T Consensus 226 iaeGVEt~~~~~~l~~lG~~~~QG~~~~~P~~~~~ 260 (268)
T 3hv8_A 226 IVPFVESASVLATLWQAGATYIQGYYLQGPSQAMD 260 (268)
T ss_dssp EECCCCSHHHHHHHHHHTCSEECSTTTCCCBSSCC
T ss_pred EEEeeCCHHHHHHHHHcCCCEeccCeecCCCcccc
Confidence 457888888999999999864 4778877653
No 258
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=48.63 E-value=57 Score=24.09 Aligned_cols=52 Identities=15% Similarity=0.096 Sum_probs=39.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
+.+|-++.... ....+...+...+..+..+.+..++++++ ...+.|+++.|.
T Consensus 111 g~~v~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l-----------~~G~vDa~~~~~ 162 (239)
T 1lst_A 111 GKHVGVLQGST-QEAYANDNWRTKGVDVVAYANQDLIYSDL-----------TAGRLDAALQDE 162 (239)
T ss_dssp TCEEEEETTSH-HHHHHHHHTGGGTCEEEEESSHHHHHHHH-----------HTTSCSEEEEEH
T ss_pred CCEEEEEcCcc-HHHHHHHhcccCCCeEEEcCCHHHHHHHH-----------HcCCCCEEEeCc
Confidence 56777776554 44556666655688999999999999999 556789999873
No 259
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=48.52 E-value=96 Score=25.28 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=51.1
Q ss_pred CCEEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CCHHHHHHHHHhcCCCCCCcEEEEecCCCH----
Q 048660 117 SCKVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MTGYELLKKIKESSVFREVPVVIMSSEDVL---- 190 (213)
Q Consensus 117 g~~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~G~e~~~~ir~~~~~~~~pII~lt~~~~~---- 190 (213)
.+.+. ++.+.++|....+.- .....|. -++..++ ..++.+++.+++. ..+||.++......
T Consensus 39 ~~~lEvc~~s~~~a~~A~~gG---------AdRIELc-~~l~~GGlTPS~g~i~~a~~~---~~ipV~vMIRPRgGdF~Y 105 (287)
T 3iwp_A 39 GFLMEVCVDSVESAVNAERGG---------ADRIELC-SGLSEGGTTPSMGVLQVVKQS---VQIPVFVMIRPRGGDFLY 105 (287)
T ss_dssp CSEEEEEESSHHHHHHHHHHT---------CSEEEEC-BCGGGTCBCCCHHHHHHHHTT---CCSCEEEECCSSSSCSCC
T ss_pred CceEEEEeCCHHHHHHHHHhC---------CCEEEEC-CCCCCCCCCCCHHHHHHHHHh---cCCCeEEEEecCCCCccc
Confidence 44443 567888887776421 1233333 2233344 3488899999874 36999988775544
Q ss_pred ---------HHHHHHHHcCCCeeeeC
Q 048660 191 ---------TQIDSCLEEGAEEYIVK 207 (213)
Q Consensus 191 ---------~~~~~~~~~G~~~~L~K 207 (213)
.++..+.++|++++..-
T Consensus 106 s~~E~~~M~~dI~~~~~~GAdGvVfG 131 (287)
T 3iwp_A 106 SDREIEVMKADIRLAKLYGADGLVFG 131 (287)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 57888999999998765
No 260
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=48.51 E-value=54 Score=25.96 Aligned_cols=77 Identities=8% Similarity=0.243 Sum_probs=43.9
Q ss_pred ccEEEEEeCCHHHH--------------HHHHHHHhhcCCEEEEEc--CHHHHH--HHhhhcCCCCCCCCCCCceeEEEE
Q 048660 93 ELHVLAVDDSYVDR--------------KLIERLLQISSCKVTAVE--SGTRAL--QYLGLDGEQSNVGFDALKVNLIIT 154 (213)
Q Consensus 93 ~~~ILvVdD~~~~~--------------~~l~~~L~~~g~~v~~a~--~g~eal--~~l~~~~~~~~~~~~~~~~dlil~ 154 (213)
..||||..+..... ..+..+|+..|+.|..++ +....+ +.| ..+|+||+
T Consensus 7 ~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L-------------~~~DvvV~ 73 (252)
T 1t0b_A 7 PIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVL-------------DRCDVLVW 73 (252)
T ss_dssp CCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHH-------------HTCSEEEE
T ss_pred CcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHH-------------hcCCEEEE
Confidence 47999998754322 246888999999998866 533222 223 15899997
Q ss_pred --eCCCCCCCHHHHHHHHHhcCCCCCCcEEEE
Q 048660 155 --DYTMPGMTGYELLKKIKESSVFREVPVVIM 184 (213)
Q Consensus 155 --D~~mp~~~G~e~~~~ir~~~~~~~~pII~l 184 (213)
|..+..++- +..+.|++-- .....+|.+
T Consensus 74 ~~~~~~~~l~~-~~~~al~~~V-~~GgG~vgi 103 (252)
T 1t0b_A 74 WGHIAHDEVKD-EVVERVHRRV-LEGMGLIVL 103 (252)
T ss_dssp ECSSCGGGSCH-HHHHHHHHHH-HTTCEEEEE
T ss_pred ecCCCCCcCCH-HHHHHHHHHH-HcCCCEEEE
Confidence 444444443 2233333311 123566666
No 261
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=48.35 E-value=1e+02 Score=24.66 Aligned_cols=71 Identities=14% Similarity=0.030 Sum_probs=43.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhc------CCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH--
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQIS------SCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-- 163 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~------g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-- 163 (213)
...+|..||-++...+..++.+... .-.-....|+.+.+... ....||+|++|...|....
T Consensus 118 ~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-----------~~~~fDvIi~d~~~~~~~~~~ 186 (304)
T 3bwc_A 118 TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT-----------PDNTYDVVIIDTTDPAGPASK 186 (304)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS-----------CTTCEEEEEEECC--------
T ss_pred CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc-----------cCCceeEEEECCCCccccchh
Confidence 3468999999999988888877321 11233456766554321 1347999999987654221
Q ss_pred ---HHHHHHHHhc
Q 048660 164 ---YELLKKIKES 173 (213)
Q Consensus 164 ---~e~~~~ir~~ 173 (213)
.++++.+++.
T Consensus 187 l~~~~~l~~~~~~ 199 (304)
T 3bwc_A 187 LFGEAFYKDVLRI 199 (304)
T ss_dssp -CCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHh
Confidence 3667777654
No 262
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=48.30 E-value=34 Score=26.60 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=36.7
Q ss_pred ceeEEEEeCCCCCC-------CHHHHHHHHHhcCC--CCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 148 KVNLIITDYTMPGM-------TGYELLKKIKESSV--FREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~dlil~D~~mp~~-------~G~e~~~~ir~~~~--~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..|.|++-...|+. .+++.++++|+... ..++||.+--+-. .+....+.++|+|.++.
T Consensus 134 ~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~-~~~~~~~~~aGad~vvv 200 (230)
T 1tqj_A 134 VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLK-PNNTWQVLEAGANAIVA 200 (230)
T ss_dssp GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTTHHHHHHTCCEEEE
T ss_pred cCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 45777666666652 25677777776410 1267777655544 47788889999998764
No 263
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=47.87 E-value=35 Score=28.04 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=34.8
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 162 TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
...+.+..+++. .+++|||+..+-.+..+..+++..||+.+.
T Consensus 242 ~~~~~l~~v~~~--~~~ipvia~GGI~~~~d~~kal~~GAd~V~ 283 (332)
T 1vcf_A 242 PTARAILEVREV--LPHLPLVASGGVYTGTDGAKALALGADLLA 283 (332)
T ss_dssp BHHHHHHHHHHH--CSSSCEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred cHHHHHHHHHHh--cCCCeEEEECCCCCHHHHHHHHHhCCChHh
Confidence 466777888775 337999999999999999999999998863
No 264
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=47.73 E-value=96 Score=25.50 Aligned_cols=71 Identities=8% Similarity=0.070 Sum_probs=46.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhc--CC---EE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC--C-
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQIS--SC---KV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM--T- 162 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~--g~---~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~--~- 162 (213)
...+|..||-++...+..++.+... |+ ++ ....|+.+.+..+ ....||+|++|...|.. .
T Consensus 143 ~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~-----------~~~~fDlIi~d~~~p~~~~~~ 211 (334)
T 1xj5_A 143 SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----------AEGSYDAVIVDSSDPIGPAKE 211 (334)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----------CTTCEEEEEECCCCTTSGGGG
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc-----------cCCCccEEEECCCCccCcchh
Confidence 3468999999999999988887642 22 23 3456766554432 23479999999865442 1
Q ss_pred --HHHHHHHHHhc
Q 048660 163 --GYELLKKIKES 173 (213)
Q Consensus 163 --G~e~~~~ir~~ 173 (213)
-.++++.+++.
T Consensus 212 l~~~~~l~~~~~~ 224 (334)
T 1xj5_A 212 LFEKPFFQSVARA 224 (334)
T ss_dssp GGSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHh
Confidence 13566666653
No 265
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=47.58 E-value=46 Score=26.00 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=24.4
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCC
Q 048660 162 TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAE 202 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~ 202 (213)
++++.++.|++. .+. .+|....-.+.++...+.++|++
T Consensus 50 ~a~~~I~~l~~~--~p~-~~IGAGTVlt~~~a~~ai~AGA~ 87 (217)
T 3lab_A 50 AGLAAISAIKKA--VPE-AIVGAGTVCTADDFQKAIDAGAQ 87 (217)
T ss_dssp THHHHHHHHHHH--CTT-SEEEEECCCSHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHH--CCC-CeEeeccccCHHHHHHHHHcCCC
Confidence 466777777765 334 45555555567777777777774
No 266
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=47.58 E-value=18 Score=32.49 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=41.4
Q ss_pred ceeEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 148 KVNLIITDYTMPGM-TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 148 ~~dlil~D~~mp~~-~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
..|+|++|...... .-+++++.||+. .++++||+ ..-...+....++++|+|...
T Consensus 293 GvD~iviD~ahGhs~~v~~~i~~ik~~--~p~~~via-GNVaT~e~a~~Li~aGAD~vk 348 (556)
T 4af0_A 293 GLDVVVLDSSQGNSVYQIEFIKWIKQT--YPKIDVIA-GNVVTREQAAQLIAAGADGLR 348 (556)
T ss_dssp TCCEEEECCSCCCSHHHHHHHHHHHHH--CTTSEEEE-EEECSHHHHHHHHHHTCSEEE
T ss_pred CCcEEEEeccccccHHHHHHHHHHHhh--CCcceEEe-ccccCHHHHHHHHHcCCCEEe
Confidence 57999999976553 357789999987 57887664 344556778888999998764
No 267
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=47.54 E-value=63 Score=21.90 Aligned_cols=53 Identities=11% Similarity=-0.004 Sum_probs=27.6
Q ss_pred ceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 148 KVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 148 ~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
.+|+|+.-..-+......++..+++. .+. .+|+.+.. ........+.|++..+
T Consensus 70 ~~d~vi~~~~~~~~~~~~~~~~~~~~--~~~-~ii~~~~~--~~~~~~l~~~g~~~vi 122 (144)
T 2hmt_A 70 NFEYVIVAIGANIQASTLTTLLLKEL--DIP-NIWVKAQN--YYHHKVLEKIGADRII 122 (144)
T ss_dssp GCSEEEECCCSCHHHHHHHHHHHHHT--TCS-EEEEECCS--HHHHHHHHHHTCSEEE
T ss_pred CCCEEEECCCCchHHHHHHHHHHHHc--CCC-eEEEEeCC--HHHHHHHHHcCCCEEE
Confidence 57888875532211223455556654 233 45544433 3344456678887544
No 268
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=47.14 E-value=1.1e+02 Score=24.66 Aligned_cols=89 Identities=15% Similarity=0.181 Sum_probs=49.0
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcC-HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcC
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVES-GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESS 174 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~-g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~ 174 (213)
|.++|.++...+ + +..|+.+...+- -.+.++.. .-...|.+++-..- +..-...+..+|+.
T Consensus 140 v~vid~~~~~~~-~----~~~~~~~i~gd~~~~~~L~~a-----------~i~~a~~vi~~~~~-d~~n~~~~~~ar~~- 201 (336)
T 1lnq_A 140 FVLAEDENVRKK-V----LRSGANFVHGDPTRVSDLEKA-----------NVRGARAVIVDLES-DSETIHCILGIRKI- 201 (336)
T ss_dssp EEEESCGGGHHH-H----HHTTCEEEESCTTSHHHHHHT-----------CSTTEEEEEECCSS-HHHHHHHHHHHHTT-
T ss_pred EEEEeCChhhhh-H----HhCCcEEEEeCCCCHHHHHhc-----------ChhhccEEEEcCCc-cHHHHHHHHHHHHH-
Confidence 777777665443 2 335666554432 22334433 23357788875421 22344556666765
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 175 VFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 175 ~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
.++.++++-..+. +......++|++..+
T Consensus 202 -~~~~~iiar~~~~--~~~~~l~~~G~d~vi 229 (336)
T 1lnq_A 202 -DESVRIIAEAERY--ENIEQLRMAGADQVI 229 (336)
T ss_dssp -CTTSEEEEECSSG--GGHHHHHHTTCSEEE
T ss_pred -CCCCeEEEEECCH--HHHHHHHHcCCCEEE
Confidence 4667777766443 345566688998654
No 269
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=47.08 E-value=91 Score=23.62 Aligned_cols=78 Identities=14% Similarity=0.056 Sum_probs=46.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCE--E-EEEcCHHHHHHHhhhcC--CCCCCCCCC--CceeEEEEeCCCCCCCHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCK--V-TAVESGTRALQYLGLDG--EQSNVGFDA--LKVNLIITDYTMPGMTGYE 165 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~--v-~~a~~g~eal~~l~~~~--~~~~~~~~~--~~~dlil~D~~mp~~~G~e 165 (213)
..+|..+|-++...+..+..+...|+. + ....+..+.+..+.... ..-...+.. ..||+|++|...+. -..
T Consensus 85 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~--~~~ 162 (239)
T 2hnk_A 85 DGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN--YPN 162 (239)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG--HHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHH--HHH
Confidence 568999999999999999999877752 3 34567666554331100 000001111 57999999965332 234
Q ss_pred HHHHHHh
Q 048660 166 LLKKIKE 172 (213)
Q Consensus 166 ~~~~ir~ 172 (213)
+++.+++
T Consensus 163 ~l~~~~~ 169 (239)
T 2hnk_A 163 YYPLILK 169 (239)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 270
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=46.98 E-value=37 Score=29.07 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=38.8
Q ss_pred ceeEEEEeCCCCCCC-HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 148 KVNLIITDYTMPGMT-GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~dlil~D~~mp~~~-G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+|+|++|.....-. -.+.++.+++. . .+||++= .-.+.+....+.++|+|....
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~--~-~i~Vi~g-~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSK--M-NIDVIVG-NVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTT--C-CCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhc--C-CCeEEEe-ecCCHHHHHHHHHcCCCEEEE
Confidence 578999997654322 25788888875 3 6777752 224577889999999998765
No 271
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=46.77 E-value=1.1e+02 Score=24.45 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=41.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhh----c-CCEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC-----
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQI----S-SCKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM----- 161 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~----~-g~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~----- 161 (213)
..+|..||-++...+..++.+.. . .-++ ....|+.+.+.. ....||+|++|...|..
T Consensus 114 ~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~------------~~~~fD~Ii~d~~~~~~~~~~~ 181 (296)
T 1inl_A 114 VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK------------FKNEFDVIIIDSTDPTAGQGGH 181 (296)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG------------CSSCEEEEEEEC----------
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh------------CCCCceEEEEcCCCcccCchhh
Confidence 46899999999999888888753 1 1223 345665544321 23479999999765511
Q ss_pred -CHHHHHHHHHhc
Q 048660 162 -TGYELLKKIKES 173 (213)
Q Consensus 162 -~G~e~~~~ir~~ 173 (213)
...++++.+++.
T Consensus 182 l~~~~~l~~~~~~ 194 (296)
T 1inl_A 182 LFTEEFYQACYDA 194 (296)
T ss_dssp CCSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHh
Confidence 124666776653
No 272
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=46.63 E-value=86 Score=23.21 Aligned_cols=67 Identities=7% Similarity=0.012 Sum_probs=45.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC-EEEE-EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSC-KVTA-VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIK 171 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~-~v~~-a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir 171 (213)
.+|..||-++...+..+..++..|. .+.. ..|..+.+.. ....||+|++|......+..++++.+.
T Consensus 78 ~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~------------~~~~fD~V~~~~p~~~~~~~~~l~~l~ 145 (202)
T 2fpo_A 78 AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ------------KGTPHNIVFVDPPFRRGLLEETINLLE 145 (202)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS------------CCCCEEEEEECCSSSTTTHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh------------cCCCCCEEEECCCCCCCcHHHHHHHHH
Confidence 4899999999999999999887775 4433 3454443211 234799999986433344556777776
Q ss_pred h
Q 048660 172 E 172 (213)
Q Consensus 172 ~ 172 (213)
+
T Consensus 146 ~ 146 (202)
T 2fpo_A 146 D 146 (202)
T ss_dssp H
T ss_pred h
Confidence 5
No 273
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=46.63 E-value=1.5e+02 Score=25.91 Aligned_cols=101 Identities=16% Similarity=0.152 Sum_probs=62.6
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHhhc-CCEE--EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-----
Q 048660 93 ELHVLAVD----DSYVDRKLIERLLQIS-SCKV--TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG----- 160 (213)
Q Consensus 93 ~~~ILvVd----D~~~~~~~l~~~L~~~-g~~v--~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~----- 160 (213)
+..+++++ +.....+.++.+-+.. +..+ ..+.+.++|...... ..|.|.+... |+
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a------------GaD~I~Vg~g-~Gs~~~t 309 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA------------GVSAVKVGIG-PGSICTT 309 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH------------TCSEEEECSS-CCTTBCH
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh------------CCCEEEECCC-CCcCccc
Confidence 45677776 3445556666666655 3333 246677777666532 3577776422 11
Q ss_pred -------CCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 161 -------MTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 161 -------~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
...++++..+.+......+|||+-.+-.+..+..+++.+||+....
T Consensus 310 r~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~i 362 (496)
T 4fxs_A 310 RIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 362 (496)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred ccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEe
Confidence 2234555555542112368999988888999999999999998643
No 274
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=46.47 E-value=1.3e+02 Score=25.24 Aligned_cols=96 Identities=17% Similarity=0.097 Sum_probs=58.8
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHhhc-CCEEEE--EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC----
Q 048660 93 ELHVLAVDD----SYVDRKLIERLLQIS-SCKVTA--VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM---- 161 (213)
Q Consensus 93 ~~~ILvVdD----~~~~~~~l~~~L~~~-g~~v~~--a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~---- 161 (213)
+..++.+|- .....+.++.+-+.+ +..|.. +.+.++|....+ ...|.|.+... |+.
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~------------aGaD~I~Vg~g-~G~~~~t 178 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLAS------------CGADIIKAGIG-GGSVCST 178 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHH------------TTCSEEEECCS-SSSCHHH
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHH------------cCCCEEEEcCC-CCcCccc
Confidence 456888862 233334444443333 454543 778888887763 24678887432 322
Q ss_pred --------CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 162 --------TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 162 --------~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
..++.+..+.+. .. |||+-.+-.+..+..+++.+||+...
T Consensus 179 r~~~g~g~p~l~aI~~~~~~---~~-PVIAdGGI~~~~di~kALa~GAd~V~ 226 (361)
T 3r2g_A 179 RIKTGFGVPMLTCIQDCSRA---DR-SIVADGGIKTSGDIVKALAFGADFVM 226 (361)
T ss_dssp HHHHCCCCCHHHHHHHHTTS---SS-EEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred cccCCccHHHHHHHHHHHHh---CC-CEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 223444444332 12 89988888889999999999998864
No 275
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=46.33 E-value=33 Score=27.11 Aligned_cols=50 Identities=14% Similarity=0.247 Sum_probs=34.0
Q ss_pred ceeEEEEeCCCCCC---CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCC
Q 048660 148 KVNLIITDYTMPGM---TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKP 208 (213)
Q Consensus 148 ~~dlil~D~~mp~~---~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP 208 (213)
.-|+|.+-.. -++ +-+++++++|+ .++|+|+++...+. +.+|+|++|.--
T Consensus 33 GaD~IelG~S-~g~t~~~~~~~v~~ir~----~~~Pivl~~y~~n~------i~~gvDg~iipd 85 (234)
T 2f6u_A 33 GTDAVMISGT-QNVTYEKARTLIEKVSQ----YGLPIVVEPSDPSN------VVYDVDYLFVPT 85 (234)
T ss_dssp TCSEEEECCC-TTCCHHHHHHHHHHHTT----SCCCEEECCSSCCC------CCCCSSEEEEEE
T ss_pred CCCEEEECCC-CCCCHHHHHHHHHHhcC----CCCCEEEecCCcch------hhcCCCEEEEcc
Confidence 3578877764 223 25666777765 47999999998432 278999988743
No 276
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=46.06 E-value=22 Score=29.77 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCCCCCcEE--EEecCCCHHHHHHHHHcCCCeeee
Q 048660 163 GYELLKKIKESSVFREVPVV--IMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII--~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
++++++.+++. ..+|+| +..+-.+.++..++++.|+++++.
T Consensus 228 ~lell~~i~~~---~~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~V 270 (330)
T 2yzr_A 228 LYEVLLEVKKL---GRLPVVNFAAGGVATPADAALMMQLGSDGVFV 270 (330)
T ss_dssp HHHHHHHHHHH---TSCSSEEEECSCCCSHHHHHHHHHTTCSCEEE
T ss_pred hHHHHHHHHHh---CCCCeEEEEECCCCCHHHHHHHHHcCcCEEee
Confidence 56888999874 367885 555566799999999999999864
No 277
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=45.90 E-value=57 Score=23.69 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=37.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
.+.+|.++..... ..+|.+.|..+..+.+..++++++ .....|+++++.
T Consensus 111 ~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l-----------~~g~~D~~~~~~ 159 (228)
T 2pyy_A 111 PGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKAL-----------QTKKADAVVFDA 159 (228)
T ss_dssp TTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHH-----------HTTSSSEEEEEH
T ss_pred CCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHH-----------HcCCCCEEEecH
Confidence 4567877776652 345556788999999999999999 456789999873
No 278
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=45.86 E-value=34 Score=25.56 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=50.4
Q ss_pred CccEEEEEeCCHHH----------HHHHHHHHhhcCCEEEEE-----------------cC---HHHHHHHhhhcCCCCC
Q 048660 92 KELHVLAVDDSYVD----------RKLIERLLQISSCKVTAV-----------------ES---GTRALQYLGLDGEQSN 141 (213)
Q Consensus 92 ~~~~ILvVdD~~~~----------~~~l~~~L~~~g~~v~~a-----------------~~---g~eal~~l~~~~~~~~ 141 (213)
+..+|+++.|+-.. ...+...|...|+.+... -+ ..+.+..+....
T Consensus 4 ~~~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~G~~~~~~~~n~g~~G~~~~~~~~~l~~~l---- 79 (215)
T 2vpt_A 4 KTIKIMPVGDSCTEGMGGGEMGSYRTELYRLLTQAGLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINNWL---- 79 (215)
T ss_dssp CEEEEEEEESHHHHTCSSSTTCTTHHHHHHHHHHTTCEEEECCSEECCCTTCSCCEEEECTTCCHHHHHHHHHHHH----
T ss_pred CceEEEecccccccCCCCCCCCchHHHHHHHHHHcCCceEEEecccCCCCCCCCCCccCcCchhHHHHHHHHHHHh----
Confidence 35689999887653 466777787667765443 11 233443332110
Q ss_pred CCCCCCceeEEEEeCCCCCC--------CH-HHHHHHHHhcCCCCCCcEEEEecCC
Q 048660 142 VGFDALKVNLIITDYTMPGM--------TG-YELLKKIKESSVFREVPVVIMSSED 188 (213)
Q Consensus 142 ~~~~~~~~dlil~D~~mp~~--------~G-~e~~~~ir~~~~~~~~pII~lt~~~ 188 (213)
....||+|++.+..-+. .. -.+++.+|+. .+..+|++++...
T Consensus 80 ---~~~~pd~vvi~~G~ND~~~~~~~~~~~l~~li~~i~~~--~p~~~ii~~~~~p 130 (215)
T 2vpt_A 80 ---NTHNPDVVFLWIGGNDLLLNGNLNATGLSNLIDQIFTV--KPNVTLFVADYYP 130 (215)
T ss_dssp ---HHHCCSEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHH--CTTCEEEEECCCS
T ss_pred ---hccCCCEEEEEccccccCCCCChhHHHHHHHHHHHHHh--CCCCEEEEEeCCC
Confidence 12368999987632221 11 2357777776 5678888876543
No 279
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=45.50 E-value=99 Score=23.55 Aligned_cols=85 Identities=7% Similarity=-0.001 Sum_probs=48.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~ir 171 (213)
+.++||..-..-+...+.+.|.+.|++|..+....+.++.+...... .......+-+|+ -+.+.. .+++.+.
T Consensus 9 ~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~--~~~~~~~~~~~~~~ 81 (253)
T 3qiv_A 9 NKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVA-----DGGTAISVAVDV--SDPESAKAMADRTL 81 (253)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----TTCEEEEEECCT--TSHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh-----cCCcEEEEEccC--CCHHHHHHHHHHHH
Confidence 45789999988888899999988999987765444433332211000 112233444444 343333 3556665
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+. ...+-+++..+
T Consensus 82 ~~--~g~id~li~~A 94 (253)
T 3qiv_A 82 AE--FGGIDYLVNNA 94 (253)
T ss_dssp HH--HSCCCEEEECC
T ss_pred HH--cCCCCEEEECC
Confidence 54 23455666654
No 280
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=45.49 E-value=38 Score=27.62 Aligned_cols=71 Identities=11% Similarity=0.162 Sum_probs=44.5
Q ss_pred HHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC--------CCCCHHHHHHHHHhcCCCCCCcEEEEecCC----------
Q 048660 127 TRALQYLGLDGEQSNVGFDALKVNLIITDYTM--------PGMTGYELLKKIKESSVFREVPVVIMSSED---------- 188 (213)
Q Consensus 127 ~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m--------p~~~G~e~~~~ir~~~~~~~~pII~lt~~~---------- 188 (213)
..|++++... ...+++|+.... -++.. +..+|+. .+.+||++-+.+.
T Consensus 151 ~~ave~i~~~----------Gn~~i~L~erg~~y~~~~~~vdl~~---i~~lk~~--~~~~pV~~D~sHs~q~p~~~~~~ 215 (285)
T 3sz8_A 151 KHVVSKCGEV----------GNDRVMLCERGSSFGYDNLVVDMLG---FRQMAET--TGGCPVIFDVTHSLQCRDPLGDA 215 (285)
T ss_dssp HHHHHHHHHT----------TCCCEEEEECCEECSSSCEECCTTH---HHHHHHH--TTSCCEEEETTTTCC--------
T ss_pred HHHHHHHHHc----------CCCcEEEEeCCCCCCCCcCccCHHH---HHHHHHh--CCCCCEEEeCCCccccCCCcCCC
Confidence 4577777532 245788887543 13344 4445554 3358988866665
Q ss_pred --C-----HHHHHHHHHcCCCe-eeeCCCCCC
Q 048660 189 --V-----LTQIDSCLEEGAEE-YIVKPVKLS 212 (213)
Q Consensus 189 --~-----~~~~~~~~~~G~~~-~L~KP~~~~ 212 (213)
. ......+...|+++ ++-|.++++
T Consensus 216 s~G~r~~v~~~a~AAvA~GA~gl~IE~H~~pd 247 (285)
T 3sz8_A 216 SGGRRRQVLDLARAGIAVGIAGLFLEAHPDPD 247 (285)
T ss_dssp -------HHHHHHHHHHHCCSEEEEEEESCGG
T ss_pred CCCchhhHHHHHHHHHHhCCCEEEEEeccChh
Confidence 2 44567888999997 677777654
No 281
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=45.44 E-value=61 Score=27.08 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=47.4
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHhhcCCEEEEEc------C---HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC
Q 048660 94 LHVLAVDDSYV-----DRKLIERLLQISSCKVTAVE------S---GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP 159 (213)
Q Consensus 94 ~~ILvVdD~~~-----~~~~l~~~L~~~g~~v~~a~------~---g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp 159 (213)
.|+|||-|... ..+.+...|++.|+.+..+. + ..++.+.+ ....+|+|| ...
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~-----------~~~~~d~II---avG 106 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERY-----------RNDSFDFVV---GLG 106 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHH-----------TTSCCSEEE---EEE
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHH-----------HhcCCCEEE---EeC
Confidence 47888877632 34667777888887665442 2 23344444 344678887 235
Q ss_pred CCCHHHHHHHHHhcCCC---------------CCCcEEEEe
Q 048660 160 GMTGYELLKKIKESSVF---------------REVPVVIMS 185 (213)
Q Consensus 160 ~~~G~e~~~~ir~~~~~---------------~~~pII~lt 185 (213)
+.+-.++++.+...... +.+|+|.+-
T Consensus 107 GGsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IP 147 (371)
T 1o2d_A 107 GGSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIP 147 (371)
T ss_dssp SHHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEE
T ss_pred ChHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEe
Confidence 66667777776653221 567888763
No 282
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=45.28 E-value=86 Score=22.78 Aligned_cols=95 Identities=18% Similarity=0.160 Sum_probs=58.3
Q ss_pred EEEEEe--CCHHHHHHHHHHHhhcCCEEEEEc-CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC--CHHHHHHH
Q 048660 95 HVLAVD--DSYVDRKLIERLLQISSCKVTAVE-SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM--TGYELLKK 169 (213)
Q Consensus 95 ~ILvVd--D~~~~~~~l~~~L~~~g~~v~~a~-~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~--~G~e~~~~ 169 (213)
+|.++. ........+...|.+.|..+.... ++.+....+.. -..=|++|. +...+. +-.++++.
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~----------~~~~d~~i~-iS~sG~t~~~~~~~~~ 109 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLAN----------LRPTDLMIG-VSVWRYLRDTVAALAG 109 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHT----------CCTTEEEEE-ECCSSCCHHHHHHHHH
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhc----------CCCCCEEEE-EeCCCCCHHHHHHHHH
Confidence 676664 566777788888888999998887 56555544421 112244444 444543 34556666
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCC
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~ 209 (213)
.++. ..++|++|+....... ..+|-.|.-|.
T Consensus 110 ak~~----g~~vi~IT~~~~s~l~-----~~ad~~l~~~~ 140 (187)
T 3sho_A 110 AAER----GVPTMALTDSSVSPPA-----RIADHVLVAAT 140 (187)
T ss_dssp HHHT----TCCEEEEESCTTSHHH-----HHCSEEEECCC
T ss_pred HHHC----CCCEEEEeCCCCCcch-----hhCcEEEEecC
Confidence 6654 6899999997654322 23555565443
No 283
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=45.08 E-value=81 Score=22.79 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.++++.+++. ..+++++|+.........+...|.+.|+.
T Consensus 41 ~~~l~~L~~~----G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~ 79 (180)
T 1k1e_A 41 GLGIKMLMDA----DIQVAVLSGRDSPILRRRIADLGIKLFFL 79 (180)
T ss_dssp HHHHHHHHHT----TCEEEEEESCCCHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHC----CCeEEEEeCCCcHHHHHHHHHcCCceeec
Confidence 4678888764 57899999998877777777889887763
No 284
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=45.07 E-value=91 Score=23.01 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=45.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC--KVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
..+|..+|-++...+..++.++..|. .+. ...+..+.+..+ . . ||+|++|.. ..+-..+++.
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----------~-~-fD~v~~~~~--~~~~~~~l~~ 145 (210)
T 3c3p_A 81 SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ-----------R-D-IDILFMDCD--VFNGADVLER 145 (210)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC-----------C-S-EEEEEEETT--TSCHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC-----------C-C-CCEEEEcCC--hhhhHHHHHH
Confidence 56899999999999999988887764 243 445655443222 2 3 999999954 3345566777
Q ss_pred HHhc
Q 048660 170 IKES 173 (213)
Q Consensus 170 ir~~ 173 (213)
+.+.
T Consensus 146 ~~~~ 149 (210)
T 3c3p_A 146 MNRC 149 (210)
T ss_dssp HGGG
T ss_pred HHHh
Confidence 7653
No 285
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=44.84 E-value=44 Score=24.84 Aligned_cols=30 Identities=13% Similarity=0.003 Sum_probs=20.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEEc
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVE 124 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~ 124 (213)
+|||..-.-.+...+...|.+.|+.|..+.
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~ 31 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVV 31 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEE
Confidence 577777776677777777766777776554
No 286
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=44.57 E-value=89 Score=26.50 Aligned_cols=78 Identities=10% Similarity=0.096 Sum_probs=48.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCE---EE-EEcCHHHHHH-HhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCK---VT-AVESGTRALQ-YLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~---v~-~a~~g~eal~-~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
.+|..||-++...+.+++-++..|.. +. ...|..+.+. .+ ...||+|++|- ++.. .++++
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~------------~~~fD~V~lDP--~g~~-~~~l~ 142 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW------------GFGFDYVDLDP--FGTP-VPFIE 142 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC------------SSCEEEEEECC--SSCC-HHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh------------CCCCcEEEECC--CcCH-HHHHH
Confidence 58999999999999999999988863 44 3455555443 22 23699999996 3322 23444
Q ss_pred HHHhcCCCCCCcEEEEecCC
Q 048660 169 KIKESSVFREVPVVIMSSED 188 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~ 188 (213)
...+. ...--++.+|...
T Consensus 143 ~a~~~--Lk~gGll~~t~t~ 160 (392)
T 3axs_A 143 SVALS--MKRGGILSLTATD 160 (392)
T ss_dssp HHHHH--EEEEEEEEEEECC
T ss_pred HHHHH--hCCCCEEEEEecc
Confidence 43331 1111266666643
No 287
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=44.38 E-value=81 Score=22.25 Aligned_cols=67 Identities=7% Similarity=-0.032 Sum_probs=43.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCE--EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCK--VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~--v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
...+|..+|-++...+..+..+...|.. +....+..+ .+.. ....||+|++...+.. ..+++.
T Consensus 48 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~~~---------~~~~~D~i~~~~~~~~---~~~l~~ 112 (178)
T 3hm2_A 48 PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR---AFDD---------VPDNPDVIFIGGGLTA---PGVFAA 112 (178)
T ss_dssp SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTG---GGGG---------CCSCCSEEEECC-TTC---TTHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHh---hhhc---------cCCCCCEEEECCcccH---HHHHHH
Confidence 4578999999999999999988877653 533444322 2210 1157999999876665 345555
Q ss_pred HHhc
Q 048660 170 IKES 173 (213)
Q Consensus 170 ir~~ 173 (213)
+.+.
T Consensus 113 ~~~~ 116 (178)
T 3hm2_A 113 AWKR 116 (178)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5543
No 288
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=44.27 E-value=69 Score=24.35 Aligned_cols=85 Identities=9% Similarity=0.108 Sum_probs=46.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~ir 171 (213)
+.++||..-..-+...+...|.+.|++|..+....+.++.+...... .......+-+|+ -+.+.. ++++.+.
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~--~~~~~~~~~~~~~~ 77 (247)
T 3lyl_A 5 EKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKE-----KGFKARGLVLNI--SDIESIQNFFAEIK 77 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH-----TTCCEEEEECCT--TCHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCceEEEEecC--CCHHHHHHHHHHHH
Confidence 45788888888888888888888899887654433333322111000 112334444454 343333 3566665
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+. ...+-+++..+
T Consensus 78 ~~--~~~id~li~~A 90 (247)
T 3lyl_A 78 AE--NLAIDILVNNA 90 (247)
T ss_dssp HT--TCCCSEEEECC
T ss_pred HH--cCCCCEEEECC
Confidence 54 34556666654
No 289
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=44.24 E-value=30 Score=28.44 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
++.++.+++.- ..++|||+..+-.+.++..+++.+||+.+
T Consensus 276 ~~~i~~i~~~~-~~~ipVi~~GGI~~~~da~~~l~~GAd~V 315 (336)
T 1f76_A 276 TEIIRRLSLEL-NGRLPIIGVGGIDSVIAAREKIAAGASLV 315 (336)
T ss_dssp HHHHHHHHHHH-TTSSCEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCHHHHHHHHHCCCCEE
Confidence 36777888752 23799999999999999999999999875
No 290
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=43.77 E-value=57 Score=27.01 Aligned_cols=46 Identities=11% Similarity=0.186 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHhcCCCCCCcEEEEe--cCCCHHHHHHHHHcCCCeeee
Q 048660 159 PGMTGYELLKKIKESSVFREVPVVIMS--SEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 159 p~~~G~e~~~~ir~~~~~~~~pII~lt--~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+..+-+++++.+++. .+++++.+++ +........++.++|++.+..
T Consensus 65 ~~~~~~e~l~~i~~~--~~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I 112 (345)
T 1nvm_A 65 GRHTDLEYIEAVAGE--ISHAQIATLLLPGIGSVHDLKNAYQAGARVVRV 112 (345)
T ss_dssp CSSCHHHHHHHHHTT--CSSSEEEEEECBTTBCHHHHHHHHHHTCCEEEE
T ss_pred CCCCHHHHHHHHHhh--CCCCEEEEEecCCcccHHHHHHHHhCCcCEEEE
Confidence 445788999999875 5688888884 344677889999999987643
No 291
>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}
Probab=43.69 E-value=30 Score=27.61 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=38.4
Q ss_pred eEEEEeCCCCCC---CHHHHHHHHHhcCCCC---CCcEEEEecCCCHHHHHHHHHc--CCCeeee
Q 048660 150 NLIITDYTMPGM---TGYELLKKIKESSVFR---EVPVVIMSSEDVLTQIDSCLEE--GAEEYIV 206 (213)
Q Consensus 150 dlil~D~~mp~~---~G~e~~~~ir~~~~~~---~~pII~lt~~~~~~~~~~~~~~--G~~~~L~ 206 (213)
.+++.|+.--++ .-+++++.+.+. .+ .+|+|+-.+-.+.++..++++. |+++.+.
T Consensus 173 ~il~t~i~~dG~~~G~d~eli~~l~~~--~~~~~~iPVIasGGi~s~ed~~~l~~~~~G~~gviv 235 (260)
T 2agk_A 173 EFLIHAADVEGLCGGIDELLVSKLFEW--TKDYDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTF 235 (260)
T ss_dssp EEEEEC-------CCCCHHHHHHHHHH--HTTCSSCEEEEESCCCCTHHHHHHHHHHTTCEEEEC
T ss_pred EEEEEeeccccCcCCCCHHHHHHHHHh--hcccCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEe
Confidence 467778754322 247789999874 22 7899988888889999999988 9988653
No 292
>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*
Probab=43.56 E-value=25 Score=29.26 Aligned_cols=39 Identities=5% Similarity=-0.188 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 165 ELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 165 e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
++++.+++. .+.+|||.+.+-.+.++..+.+.+||+..-
T Consensus 266 ~~v~~~~~~--~~~~pIIg~GGI~s~~Da~e~i~aGAs~Vq 304 (354)
T 3tjx_A 266 ANINAFYRR--CPGKLIFGCGGVYTGEDAFLHVLAGASMVQ 304 (354)
T ss_dssp HHHHHHHHH--CTTSEEEEESSCCSHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHh--cCCCcEEEeCCcCCHHHHHHHHHcCCCEEE
Confidence 445566554 467899999999999999999999998753
No 293
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=43.51 E-value=46 Score=26.17 Aligned_cols=41 Identities=17% Similarity=0.231 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..++++++|+. .++||++-.+-.+.+...++..+|+++++.
T Consensus 189 ~~~~i~~v~~~---~~~pI~vgGGI~~~e~~~~~~~~GAdgvvV 229 (262)
T 1rd5_A 189 VESLIQEVKKV---TNKPVAVGFGISKPEHVKQIAQWGADGVII 229 (262)
T ss_dssp HHHHHHHHHHH---CSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhh---cCCeEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 55688888875 378999877777799999999999998764
No 294
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=43.41 E-value=92 Score=24.58 Aligned_cols=93 Identities=12% Similarity=0.135 Sum_probs=57.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EEcCHHHHHHHhhhcCCCCCCCCCCC-ceeEEEEeCCCCCCCHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSC--KVT-AVESGTRALQYLGLDGEQSNVGFDAL-KVNLIITDYTMPGMTGYEL 166 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~l~~~~~~~~~~~~~~-~~dlil~D~~mp~~~G~e~ 166 (213)
....+|.-+|=++...+..+.-++..|. .+. ...|+.+.+ ... .||+|++ -+|.|--+
T Consensus 43 ~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~--------------~~~~~~D~Ivi----agmGg~lI 104 (244)
T 3gnl_A 43 QTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI--------------EKKDAIDTIVI----AGMGGTLI 104 (244)
T ss_dssp TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC--------------CGGGCCCEEEE----EEECHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc--------------CccccccEEEE----eCCchHHH
Confidence 3455899999999999999999988875 233 445653332 222 4899887 35666333
Q ss_pred HHHHHhcC-CCCCCcEEEEecCCCHHHHHHHH-HcCC
Q 048660 167 LKKIKESS-VFREVPVVIMSSEDVLTQIDSCL-EEGA 201 (213)
Q Consensus 167 ~~~ir~~~-~~~~~pII~lt~~~~~~~~~~~~-~~G~ 201 (213)
.+.|.+.. .......+++++........+++ +.|+
T Consensus 105 ~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~~~Gf 141 (244)
T 3gnl_A 105 RTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNNW 141 (244)
T ss_dssp HHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHHTE
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHHHCCC
Confidence 33333211 12334667788877777666666 4454
No 295
>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}
Probab=43.16 E-value=82 Score=24.64 Aligned_cols=53 Identities=21% Similarity=0.301 Sum_probs=37.2
Q ss_pred eEEEEeCCCCCC-CH--HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 150 NLIITDYTMPGM-TG--YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 150 dlil~D~~mp~~-~G--~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
.++++|+.--++ .| +++++.+++. .+++|+|+--+-.+.++..++ +.++++.+
T Consensus 167 eil~t~Id~DGt~~G~d~~l~~~l~~~--~~~ipviasGGv~~~~Dl~~l-~~~~~gvi 222 (243)
T 4gj1_A 167 HILCTDISKDGTMQGVNVRLYKLIHEI--FPNICIQASGGVASLKDLENL-KGICSGVI 222 (243)
T ss_dssp EEEEEETTC-----CCCHHHHHHHHHH--CTTSEEEEESCCCSHHHHHHT-TTTCSEEE
T ss_pred EEEeeeecccccccCCCHHHHHHHHHh--cCCCCEEEEcCCCCHHHHHHH-HccCchhe
Confidence 689999876553 33 4678888875 567999988888888887765 56677654
No 296
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=43.00 E-value=80 Score=24.79 Aligned_cols=86 Identities=10% Similarity=0.015 Sum_probs=47.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKI 170 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~i 170 (213)
.+.++||..-..-+-..+...|.+.|++|..+....+.++.+...... .......+-+|+ -+.+.. ++++.+
T Consensus 23 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dv--~d~~~v~~~~~~~ 95 (279)
T 3sju_A 23 RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRA-----AGHDVDGSSCDV--TSTDEVHAAVAAA 95 (279)
T ss_dssp --CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT-----TTCCEEEEECCT--TCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEECCC--CCHHHHHHHHHHH
Confidence 456799999998899999999988999987664433333222111000 112344444554 333333 355666
Q ss_pred HhcCCCCCCcEEEEec
Q 048660 171 KESSVFREVPVVIMSS 186 (213)
Q Consensus 171 r~~~~~~~~pII~lt~ 186 (213)
.+. ...+-+++..+
T Consensus 96 ~~~--~g~id~lv~nA 109 (279)
T 3sju_A 96 VER--FGPIGILVNSA 109 (279)
T ss_dssp HHH--HCSCCEEEECC
T ss_pred HHH--cCCCcEEEECC
Confidence 554 23455666544
No 297
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=42.97 E-value=64 Score=25.85 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.++++++|+. .++|+++=.+-.+.+...+. .|+|+.+.
T Consensus 191 ~~~v~~vr~~---~~~Pv~vGfGI~t~e~a~~~--~~ADgVIV 228 (271)
T 1ujp_A 191 KDLVRRIKAR---TALPVAVGFGVSGKATAAQA--AVADGVVV 228 (271)
T ss_dssp HHHHHHHHTT---CCSCEEEESCCCSHHHHHHH--TTSSEEEE
T ss_pred HHHHHHHHhh---cCCCEEEEcCCCCHHHHHHh--cCCCEEEE
Confidence 4788888874 37898876666778888775 99999864
No 298
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=42.96 E-value=85 Score=22.10 Aligned_cols=74 Identities=14% Similarity=0.057 Sum_probs=51.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCC-EEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSC-KVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~-~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
...+|..+|-++...+..+..++..|. .+. ...+..+ .+ ....||+|+++.. .+-.++++.
T Consensus 56 ~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~---~~-----------~~~~~D~i~~~~~---~~~~~~l~~ 118 (183)
T 2yxd_A 56 RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED---VL-----------DKLEFNKAFIGGT---KNIEKIIEI 118 (183)
T ss_dssp TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH---HG-----------GGCCCSEEEECSC---SCHHHHHHH
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc---cc-----------cCCCCcEEEECCc---ccHHHHHHH
Confidence 467899999999999999998887764 333 4455544 23 2247999999865 566678888
Q ss_pred HHhcCCCCCCcEEEEe
Q 048660 170 IKESSVFREVPVVIMS 185 (213)
Q Consensus 170 ir~~~~~~~~pII~lt 185 (213)
+++. +.-.+++.+
T Consensus 119 ~~~~---~gG~l~~~~ 131 (183)
T 2yxd_A 119 LDKK---KINHIVANT 131 (183)
T ss_dssp HHHT---TCCEEEEEE
T ss_pred HhhC---CCCEEEEEe
Confidence 8765 343444444
No 299
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=42.29 E-value=1.2e+02 Score=23.75 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=43.0
Q ss_pred EEEEEeCCHHHHHHHHHHHh-hcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 95 HVLAVDDSYVDRKLIERLLQ-ISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~-~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
||.|+.-.-..-+.+.+.+. ..++.+..+.+..+-++.+. . ..+| +++|+.-|. ...+.++...+.
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~----------~-~~~D-vvIDfT~p~-a~~~~~~~a~~~ 68 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLT----------D-GNTE-VVIDFTHPD-VVMGNLEFLIDN 68 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHH----------H-TTCC-EEEECSCTT-THHHHHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHh----------c-cCCc-EEEEccChH-HHHHHHHHHHHc
Confidence 67777764444555555554 44787775533211111110 1 1467 677998776 456666655543
Q ss_pred CCCCCCcEEEEecCCCHHH
Q 048660 174 SVFREVPVVIMSSEDVLTQ 192 (213)
Q Consensus 174 ~~~~~~pII~lt~~~~~~~ 192 (213)
.+++|+-|..-+.+.
T Consensus 69 ----g~~~VigTTG~~~e~ 83 (245)
T 1p9l_A 69 ----GIHAVVGTTGFTAER 83 (245)
T ss_dssp ----TCEEEECCCCCCHHH
T ss_pred ----CCCEEEcCCCCCHHH
Confidence 567776544334443
No 300
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=42.24 E-value=93 Score=24.07 Aligned_cols=86 Identities=12% Similarity=0.066 Sum_probs=49.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKI 170 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~i 170 (213)
.+.++||..-..-+-..+...|.+.|++|..+....+.++.+...... .......+-+|+ -+.+.. ++++.+
T Consensus 10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv--~~~~~v~~~~~~~ 82 (264)
T 3ucx_A 10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTD-----TGRRALSVGTDI--TDDAQVAHLVDET 82 (264)
T ss_dssp TTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCT--TCHHHHHHHHHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEcCC--CCHHHHHHHHHHH
Confidence 356799999998888899999988999887765433333322211000 112333444454 443333 356666
Q ss_pred HhcCCCCCCcEEEEec
Q 048660 171 KESSVFREVPVVIMSS 186 (213)
Q Consensus 171 r~~~~~~~~pII~lt~ 186 (213)
.+. ...+-+++..+
T Consensus 83 ~~~--~g~id~lv~nA 96 (264)
T 3ucx_A 83 MKA--YGRVDVVINNA 96 (264)
T ss_dssp HHH--TSCCSEEEECC
T ss_pred HHH--cCCCcEEEECC
Confidence 655 34566666654
No 301
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=42.20 E-value=1.1e+02 Score=24.00 Aligned_cols=85 Identities=8% Similarity=0.023 Sum_probs=49.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~ir 171 (213)
+..+||..-..-+...+...|.+.|++|..+....+.++.+.... ......+..+.+.+-+.+.. .+++.+.
T Consensus 28 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l-------~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 100 (283)
T 3v8b_A 28 SPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEI-------VGAGGQAIALEADVSDELQMRNAVRDLV 100 (283)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-------TTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-------HhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 457899999988999999999889999887654444443332111 11112344444433443333 3566665
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+. ...+-+++..+
T Consensus 101 ~~--~g~iD~lVnnA 113 (283)
T 3v8b_A 101 LK--FGHLDIVVANA 113 (283)
T ss_dssp HH--HSCCCEEEECC
T ss_pred HH--hCCCCEEEECC
Confidence 54 33555666544
No 302
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=42.17 E-value=40 Score=27.54 Aligned_cols=92 Identities=25% Similarity=0.295 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHhhc-CCEEEE------EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CCHHHHHHHHHh
Q 048660 101 DSYVDRKLIERLLQIS-SCKVTA------VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MTGYELLKKIKE 172 (213)
Q Consensus 101 D~~~~~~~l~~~L~~~-g~~v~~------a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~G~e~~~~ir~ 172 (213)
|.......++.+++.. +..++. +.+..+|++.+. ...+|-||+.=.-|. .+|++.++++.+
T Consensus 136 dg~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~Li-----------~lGvdrILTSG~~~~a~~Gl~~Lk~Lv~ 204 (287)
T 3iwp_A 136 DGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLL-----------TLGFERVLTSGCDSSALEGLPLIKRLIE 204 (287)
T ss_dssp TSCBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHHH-----------HHTCSEEEECTTSSSTTTTHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHHH-----------HcCCCEEECCCCCCChHHhHHHHHHHHH
Confidence 4445566666666643 344443 236888999884 235788998766543 689999999876
Q ss_pred cCCCCCCcEEEEecCCCHHHHHHHHH-cCCCeee
Q 048660 173 SSVFREVPVVIMSSEDVLTQIDSCLE-EGAEEYI 205 (213)
Q Consensus 173 ~~~~~~~pII~lt~~~~~~~~~~~~~-~G~~~~L 205 (213)
.. ...++|++- +--..+......+ +|++.|-
T Consensus 205 ~a-~~rI~ImaG-GGV~~~Ni~~l~~~tG~~~~H 236 (287)
T 3iwp_A 205 QA-KGRIVVMPG-GGITDRNLQRILEGSGATEFH 236 (287)
T ss_dssp HH-TTSSEEEEC-TTCCTTTHHHHHHHHCCSEEE
T ss_pred Hh-CCCCEEEEC-CCcCHHHHHHHHHhhCCCEEe
Confidence 53 234554443 3344555666555 8998874
No 303
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=42.00 E-value=1.4e+02 Score=25.14 Aligned_cols=86 Identities=19% Similarity=0.123 Sum_probs=53.2
Q ss_pred HHHHHHHhhcCC--EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC-----CCCCHHHHHHHHHhcCCCCCC
Q 048660 107 KLIERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM-----PGMTGYELLKKIKESSVFREV 179 (213)
Q Consensus 107 ~~l~~~L~~~g~--~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m-----p~~~G~e~~~~ir~~~~~~~~ 179 (213)
+.++.+-+..+. .+..+.+.++|....+ ...|.|.+.-.- -+..-++++.++++.- ..++
T Consensus 242 ~~i~~lr~~~~~PvivKgv~~~e~A~~a~~------------aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av-~~~i 308 (392)
T 2nzl_A 242 EDIKWLRRLTSLPIVAKGILRGDDAREAVK------------HGLNGILVSNHGARQLDGVPATIDVLPEIVEAV-EGKV 308 (392)
T ss_dssp HHHHHHC--CCSCEEEEEECCHHHHHHHHH------------TTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHH-TTSS
T ss_pred HHHHHHHHhhCCCEEEEecCCHHHHHHHHH------------cCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHc-CCCC
Confidence 334444443333 2323566777666542 235666663211 1234567778887642 2369
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 180 PVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 180 pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
|||+-.+-.+..+..+++..||+.+.
T Consensus 309 pVia~GGI~~g~Dv~kalalGAd~V~ 334 (392)
T 2nzl_A 309 EVFLDGGVRKGTDVLKALALGAKAVF 334 (392)
T ss_dssp EEEECSSCCSHHHHHHHHHTTCSEEE
T ss_pred EEEEECCCCCHHHHHHHHHhCCCeeE
Confidence 99998889999999999999999864
No 304
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=41.79 E-value=1.2e+02 Score=24.26 Aligned_cols=83 Identities=8% Similarity=-0.038 Sum_probs=49.0
Q ss_pred cEEEEE-e-CCHHHH---HHHHHHHhhcCCEEEEE------cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC
Q 048660 94 LHVLAV-D-DSYVDR---KLIERLLQISSCKVTAV------ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT 162 (213)
Q Consensus 94 ~~ILvV-d-D~~~~~---~~l~~~L~~~g~~v~~a------~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~ 162 (213)
.+|.++ + ++.... +.++..+++.|..+... .+....++.+. ...+|+|++... +.+
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~-----------~~~~d~v~~~~~--~~~ 216 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAM-----------SFNPDAIYITGY--YPE 216 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHH-----------HTCCSEEEECSC--HHH
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHH-----------hcCCCEEEEccc--hhH
Confidence 467776 3 444433 44566677888876532 34455666663 346899998432 334
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCCHH
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDVLT 191 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~~~ 191 (213)
...+++.+++.+ -..|++...+.....
T Consensus 217 a~~~~~~~~~~g--~~~~~~~~~~~~~~~ 243 (366)
T 3td9_A 217 IALISRQARQLG--FTGYILAGDGADAPE 243 (366)
T ss_dssp HHHHHHHHHHTT--CCSEEEECGGGCSTH
T ss_pred HHHHHHHHHHcC--CCceEEeeCCcCCHH
Confidence 566778887763 357776554444433
No 305
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=41.78 E-value=76 Score=24.79 Aligned_cols=108 Identities=10% Similarity=0.135 Sum_probs=63.3
Q ss_pred cccCCCcchhhhhhhhcCCccEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EEcCHHHHHHHhhhcCCCCCCCCCCCcee
Q 048660 74 ETNRGFPFWAMATVAECSKELHVLAVDDSYVDRKLIERLLQISSC--KVT-AVESGTRALQYLGLDGEQSNVGFDALKVN 150 (213)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~d 150 (213)
..+.|+...+... .......+|.-+|-++...+..+.-++..|. .+. ...|+.+.+. ....+|
T Consensus 27 DIGtGsG~l~i~l-a~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~-------------~~~~~D 92 (230)
T 3lec_A 27 DVGSDHAYLPIFL-LQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFE-------------EADNID 92 (230)
T ss_dssp EETCSTTHHHHHH-HHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCC-------------GGGCCC
T ss_pred EECCchHHHHHHH-HHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccc-------------cccccC
Confidence 3344544333322 2233456899999999999999999988875 243 3455433321 112589
Q ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CCCCCcEEEEecCCCHHHHHHHHHc
Q 048660 151 LIITDYTMPGMTGYELLKKIKESS-VFREVPVVIMSSEDVLTQIDSCLEE 199 (213)
Q Consensus 151 lil~D~~mp~~~G~e~~~~ir~~~-~~~~~pII~lt~~~~~~~~~~~~~~ 199 (213)
+|++ .+|.|--+.+-|.+.. .......+++++........+++..
T Consensus 93 ~Ivi----aGmGg~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L~~ 138 (230)
T 3lec_A 93 TITI----CGMGGRLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWLAA 138 (230)
T ss_dssp EEEE----EEECHHHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHH
T ss_pred EEEE----eCCchHHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHHHH
Confidence 8886 3666633333333211 1234457778888777777766643
No 306
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=41.78 E-value=95 Score=23.07 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 165 ELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 165 e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
+.+++++.. ++|+++. +.-+.+...+++++|++.+.
T Consensus 149 ~~i~~~~~~----~~pi~v~-GGI~~~~~~~~~~aGad~vv 184 (207)
T 3ajx_A 149 GLLAAGEKA----RVPFSVA-GGVKVATIPAVQKAGAEVAV 184 (207)
T ss_dssp HHHHHHHHH----TSCEEEE-SSCCGGGHHHHHHTTCSEEE
T ss_pred HHHHHhhCC----CCCEEEE-CCcCHHHHHHHHHcCCCEEE
Confidence 445555432 5676654 44447788899999998764
No 307
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=41.76 E-value=69 Score=25.47 Aligned_cols=85 Identities=11% Similarity=-0.004 Sum_probs=49.9
Q ss_pred EEEEE-eCCHHH---HHHHHHHHhhcCCEEEE---E----cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH
Q 048660 95 HVLAV-DDSYVD---RKLIERLLQISSCKVTA---V----ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG 163 (213)
Q Consensus 95 ~ILvV-dD~~~~---~~~l~~~L~~~g~~v~~---a----~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G 163 (213)
+|.++ +|+..- .+.++..|++.|..+.. . .+....+..+. ...+|+|++.. .+...
T Consensus 137 ~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~-----------~~~~dav~~~~--~~~~a 203 (362)
T 3snr_A 137 TVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLV-----------AANPDAILVGA--SGTAA 203 (362)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHH-----------HHCCSEEEEEC--CHHHH
T ss_pred EEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHH-----------hcCCCEEEEec--CcchH
Confidence 55544 455433 34556667788887542 2 24445566553 23688988854 23446
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHH
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQID 194 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~ 194 (213)
..+++.+++.+ -.+|++...+..+.....
T Consensus 204 ~~~~~~~~~~g--~~~p~i~~~g~~~~~~~~ 232 (362)
T 3snr_A 204 ALPQTTLRERG--YNGLIYQTHGAASMDFIR 232 (362)
T ss_dssp HHHHHHHHHTT--CCSEEEECGGGCSHHHHH
T ss_pred HHHHHHHHHcC--CCccEEeccCcCcHHHHH
Confidence 66788888763 467886666666554433
No 308
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=41.58 E-value=82 Score=24.02 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=31.0
Q ss_pred CCCceeEEEEeCCC-----CCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHH
Q 048660 145 DALKVNLIITDYTM-----PGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDS 195 (213)
Q Consensus 145 ~~~~~dlil~D~~m-----p~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~ 195 (213)
....||+||+|--. .-.+--++++.|.+. .... -+++|++..+....+
T Consensus 117 ~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R--p~~~-~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 117 ADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR--PGHQ-TVIITGRGCHRDILD 169 (196)
T ss_dssp TCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS--CTTC-EEEEECSSCCHHHHH
T ss_pred hcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC--cCCC-EEEEECCCCcHHHHH
Confidence 44679999999642 235666788888764 2344 455777766554443
No 309
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Probab=41.53 E-value=77 Score=23.01 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=36.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC--EEEEE-cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC--KVTAV-ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM 158 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~~a-~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m 158 (213)
..+|..+|-++...+..+..++..|. .+... .|..+.... ....||+|+++...
T Consensus 47 ~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------------~~~~fD~v~~~~~~ 103 (197)
T 3eey_A 47 NGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY------------IDCPVKAVMFNLGY 103 (197)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT------------CCSCEEEEEEEESB
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh------------ccCCceEEEEcCCc
Confidence 34899999999999999999988765 34333 343221111 23579999998644
No 310
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=41.34 E-value=69 Score=25.20 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=41.1
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 150 NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 150 dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+|.+|. .......++++++++. ...+|+++=-+-.+.++..++++ |+|..+.
T Consensus 165 ~~Vyl~~-~G~~~~~~~i~~i~~~--~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIV 217 (234)
T 2f6u_A 165 PIIYIEY-SGTYGNPELVAEVKKV--LDKARLFYGGGIDSREKAREMLR-YADTIIV 217 (234)
T ss_dssp SEEEEEC-TTSCCCHHHHHHHHHH--CSSSEEEEESCCCSHHHHHHHHH-HSSEEEE
T ss_pred CEEEEeC-CCCcchHHHHHHHHHh--CCCCCEEEEecCCCHHHHHHHHh-CCCEEEE
Confidence 6788887 5555568899999986 33788887677778888888888 9998764
No 311
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=41.30 E-value=63 Score=26.92 Aligned_cols=55 Identities=15% Similarity=0.132 Sum_probs=37.8
Q ss_pred ceeEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 148 KVNLIITDYTMPGM-TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 148 ~~dlil~D~~mp~~-~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
.+|++.+|...... +-++.++++|+. ++.+||++=+ -.+.++...+.++|+|...
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~--~~~~~vi~g~-v~t~e~A~~a~~aGaD~I~ 187 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKR--FPQHTIMAGN-VVTGEMVEELILSGADIIK 187 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHH--CTTSEEEEEE-ECSHHHHHHHHHTTCSEEE
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHh--cCCCeEEEEe-CCCHHHHHHHHHhCCCEEE
Confidence 35677777654222 246788888886 4578887533 3457889999999998763
No 312
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=41.28 E-value=34 Score=27.10 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=32.8
Q ss_pred ceeEEEEeCCCCCC---CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCC
Q 048660 148 KVNLIITDYTMPGM---TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209 (213)
Q Consensus 148 ~~dlil~D~~mp~~---~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~ 209 (213)
..|+|.+-.. -++ +.+++++.+|+ .++|+|+++...+. +..|+|+||.--+
T Consensus 33 GaD~ielG~S-~Gvt~~~~~~~v~~ir~----~~~Pivlm~y~~n~------i~~G~dg~iiPdL 86 (240)
T 1viz_A 33 GTDAVIIGGS-DGVTEDNVLRMMSKVRR----FLVPCVLEVSAIEA------IVPGFDLYFIPSV 86 (240)
T ss_dssp CCSEEEECC-----CHHHHHHHHHHHTT----SSSCEEEECSCGGG------CCSCCSEEEEEEE
T ss_pred CCCEEEECCC-CCCCHHHHHHHHHHhhC----cCCCEEEecCcccc------ccCCCCEEEEccc
Confidence 3467766653 222 26677777775 37999999988422 2779999987533
No 313
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=41.22 E-value=81 Score=24.31 Aligned_cols=39 Identities=5% Similarity=0.075 Sum_probs=24.0
Q ss_pred eeEEEEeCCCCCC------------CHHHHHHHHHhcCCCCCCcEEEEecCCCH
Q 048660 149 VNLIITDYTMPGM------------TGYELLKKIKESSVFREVPVVIMSSEDVL 190 (213)
Q Consensus 149 ~dlil~D~~mp~~------------~G~e~~~~ir~~~~~~~~pII~lt~~~~~ 190 (213)
.-+|++|...+.. .|..+++.|.+. .+..|.++++....
T Consensus 93 iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~---G~~~i~~i~~~~~~ 143 (292)
T 3k4h_A 93 FPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLISL---GHKQIAFIGGGSDL 143 (292)
T ss_dssp CCEEEESCCSSCTTTSCEEECCHHHHHHHHHHHHHHT---TCCCEEEEESCTTB
T ss_pred CCEEEECCCCCCCCCCCEEEECcHHHHHHHHHHHHHC---CCceEEEEeCcccc
Confidence 4477777665442 156677777664 34577777776544
No 314
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=41.17 E-value=1.4e+02 Score=24.17 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=46.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhc-----CCEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC---
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQIS-----SCKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT--- 162 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~-----g~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~--- 162 (213)
...+|..||-++...+..++.+... .-++ ....|+.+.+... ...||+|++|...|...
T Consensus 139 ~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------------~~~fDvIi~d~~~p~~~~~~ 206 (321)
T 2pt6_A 139 SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------------TNTYDVIIVDSSDPIGPAET 206 (321)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------------CSCEEEEEEECCCSSSGGGG
T ss_pred CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc------------CCCceEEEECCcCCCCcchh
Confidence 3468999999999999998887652 1223 3556776655432 24799999998544311
Q ss_pred --HHHHHHHHHhc
Q 048660 163 --GYELLKKIKES 173 (213)
Q Consensus 163 --G~e~~~~ir~~ 173 (213)
..++++.+++.
T Consensus 207 l~~~~~l~~~~~~ 219 (321)
T 2pt6_A 207 LFNQNFYEKIYNA 219 (321)
T ss_dssp GSSHHHHHHHHHH
T ss_pred hhHHHHHHHHHHh
Confidence 14667777654
No 315
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=41.05 E-value=66 Score=28.01 Aligned_cols=54 Identities=6% Similarity=-0.074 Sum_probs=39.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEE-EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTA-VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM 158 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~-a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m 158 (213)
..+|..+|-++...+.++..+++.|..+.. ..|..+..... ...||+||+|.-.
T Consensus 126 ~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~------------~~~FD~Il~D~Pc 180 (464)
T 3m6w_A 126 KGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAF------------GTYFHRVLLDAPC 180 (464)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHH------------CSCEEEEEEECCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhc------------cccCCEEEECCCc
Confidence 358999999999999999999988876433 34555543332 2479999999643
No 316
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=40.93 E-value=13 Score=29.14 Aligned_cols=91 Identities=11% Similarity=0.130 Sum_probs=54.9
Q ss_pred HHHHHhhcCCEEEE--EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC----C-CCCHHHHHHHHHhcCCCCCCcE
Q 048660 109 IERLLQISSCKVTA--VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM----P-GMTGYELLKKIKESSVFREVPV 181 (213)
Q Consensus 109 l~~~L~~~g~~v~~--a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m----p-~~~G~e~~~~ir~~~~~~~~pI 181 (213)
.-..|++.|+.+.. +..|...+..+ ...++|.|=+|-.+ . +.....+++.+.+....-.+.
T Consensus 144 ~l~~l~~~G~~ialDdfG~g~ssl~~L-----------~~l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~- 211 (259)
T 3s83_A 144 ILKTLRDAGAGLALDDFGTGFSSLSYL-----------TRLPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLE- 211 (259)
T ss_dssp HHHHHHHHTCEEEEECC---CHHHHHH-----------HHSCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCE-
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHH-----------HhCCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCe-
Confidence 34556778997765 45666677777 34478999999532 1 112333455554321122444
Q ss_pred EEEecCCCHHHHHHHHHcCCCe----eeeCCCCC
Q 048660 182 VIMSSEDVLTQIDSCLEEGAEE----YIVKPVKL 211 (213)
Q Consensus 182 I~lt~~~~~~~~~~~~~~G~~~----~L~KP~~~ 211 (213)
++..+-.+.+....+.+.|++- |+.||...
T Consensus 212 viaeGVEt~~~~~~l~~lG~~~~QG~~~~~p~~~ 245 (259)
T 3s83_A 212 VVAEGVENAEMAHALQSLGCDYGQGFGYAPALSP 245 (259)
T ss_dssp EEECCCCSHHHHHHHHHHTCCEECBTTTBCCBCH
T ss_pred EEEEeCCCHHHHHHHHhcCCCEeecCcccCCCCH
Confidence 4477778888999999999854 36688764
No 317
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=40.77 E-value=26 Score=27.15 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=40.3
Q ss_pred ee-EEEEeCC----CCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHc-----C-CCeeee
Q 048660 149 VN-LIITDYT----MPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEE-----G-AEEYIV 206 (213)
Q Consensus 149 ~d-lil~D~~----mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~-----G-~~~~L~ 206 (213)
++ +++.+.. +.+. .+++++++++. .++|+|+-.+-.+.++..++++. | +++++.
T Consensus 158 ~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~---~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~v 222 (241)
T 1qo2_A 158 LEEIVHTEIEKDGTLQEH-DFSLTKKIAIE---AEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIV 222 (241)
T ss_dssp CCEEEEEETTHHHHTCCC-CHHHHHHHHHH---HTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCEEEEEeecccccCCcC-CHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEe
Confidence 44 5666643 2222 38899999875 37899999888888999999988 9 988753
No 318
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=40.41 E-value=52 Score=25.49 Aligned_cols=94 Identities=15% Similarity=0.060 Sum_probs=55.1
Q ss_pred hhhhcccCCCcchhhhhhhhcCCccEEEEEeCCHHHHHHHHHHHhhcCC--EE-EEEcCHHHHHHHhhhcCCCCCCCCCC
Q 048660 70 KKFKETNRGFPFWAMATVAECSKELHVLAVDDSYVDRKLIERLLQISSC--KV-TAVESGTRALQYLGLDGEQSNVGFDA 146 (213)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~g~--~v-~~a~~g~eal~~l~~~~~~~~~~~~~ 146 (213)
+..-+.+.|.......-........+|..||-++...+..+..++..|. .+ ....+..+.+..+...+ ..
T Consensus 62 ~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~-------~~ 134 (242)
T 3r3h_A 62 KKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEG-------GE 134 (242)
T ss_dssp SEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHH-------CS
T ss_pred CEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhcc-------CC
Confidence 3444555555444333332223356899999998888888888887764 34 34567777665542110 13
Q ss_pred CceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 147 LKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 147 ~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
..||+|++|...+ +-..+++.+.+
T Consensus 135 ~~fD~V~~d~~~~--~~~~~l~~~~~ 158 (242)
T 3r3h_A 135 HQFDFIFIDADKT--NYLNYYELALK 158 (242)
T ss_dssp SCEEEEEEESCGG--GHHHHHHHHHH
T ss_pred CCEeEEEEcCChH--HhHHHHHHHHH
Confidence 4799999997522 23344555443
No 319
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=40.23 E-value=83 Score=27.26 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=40.3
Q ss_pred ceeEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 148 KVNLIITDYTMPGM-TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~dlil~D~~mp~~-~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+|.|.++...... .-++.++.+|+. .+.+||++= .-...+....+.++|++.+..
T Consensus 249 Gvd~v~i~~~~G~~~~~~e~i~~i~~~--~p~~pvi~g-~~~t~e~a~~l~~~G~d~I~v 305 (494)
T 1vrd_A 249 GVDVIVIDTAHGHSRRVIETLEMIKAD--YPDLPVVAG-NVATPEGTEALIKAGADAVKV 305 (494)
T ss_dssp TCSEEEECCSCCSSHHHHHHHHHHHHH--CTTSCEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEEecCCchHHHHHHHHHHHHH--CCCceEEeC-CcCCHHHHHHHHHcCCCEEEE
Confidence 57889888764322 267889999987 456888763 344577788899999987654
No 320
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=40.10 E-value=88 Score=24.36 Aligned_cols=37 Identities=8% Similarity=0.069 Sum_probs=21.1
Q ss_pred eeEEEEeCCCCCC-----------CHHHHHHHHHhcCCCCCCcEEEEecCC
Q 048660 149 VNLIITDYTMPGM-----------TGYELLKKIKESSVFREVPVVIMSSED 188 (213)
Q Consensus 149 ~dlil~D~~mp~~-----------~G~e~~~~ir~~~~~~~~pII~lt~~~ 188 (213)
+-+|++|-..+.. .|..+++.|.+. .+..|.++++..
T Consensus 89 iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~~---G~~~I~~i~~~~ 136 (294)
T 3qk7_A 89 FPFLALGRSHLPKPYAWFDFDNHAGASLAVKRLLEL---GHQRIAFVSTDA 136 (294)
T ss_dssp CCEEEESCCCCSSCCEEEEECHHHHHHHHHHHHHHT---TCCCEEEEEESS
T ss_pred CCEEEECCCCCCCCCCEEEcChHHHHHHHHHHHHHC---CCceEEEEeCCc
Confidence 3467777644321 266677777764 234666666654
No 321
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=39.98 E-value=45 Score=26.75 Aligned_cols=39 Identities=13% Similarity=0.277 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
+++++.+++. -++|||+..+-.+.++..+++.+|++...
T Consensus 230 ~~~i~~i~~~---~~ipvia~GGI~~~~d~~~~l~~GAd~V~ 268 (311)
T 1ep3_A 230 LKLIHQVAQD---VDIPIIGMGGVANAQDVLEMYMAGASAVA 268 (311)
T ss_dssp HHHHHHHHTT---CSSCEEECSSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHh---cCCCEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 4778888764 37999988888889999999999998763
No 322
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=39.94 E-value=1e+02 Score=22.21 Aligned_cols=82 Identities=12% Similarity=0.036 Sum_probs=51.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC-EE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC--CHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC-KV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM--TGYELLK 168 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~-~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~--~G~e~~~ 168 (213)
..+|..+|-++...+..+..++..|. .+ ....|..+....+ ....||+|++|.-.... +-.++++
T Consensus 67 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-----------~~~~fD~i~~~~p~~~~~~~~~~~l~ 135 (189)
T 3p9n_A 67 AASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAG-----------TTSPVDLVLADPPYNVDSADVDAILA 135 (189)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHC-----------CSSCCSEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhc-----------cCCCccEEEECCCCCcchhhHHHHHH
Confidence 45899999999999999998887774 33 3456666655433 34579999998543331 2344666
Q ss_pred HHHhc-CCCCCCcEEEEe
Q 048660 169 KIKES-SVFREVPVVIMS 185 (213)
Q Consensus 169 ~ir~~-~~~~~~pII~lt 185 (213)
.+.+. .-.+.-.+++-+
T Consensus 136 ~~~~~~~L~pgG~l~~~~ 153 (189)
T 3p9n_A 136 ALGTNGWTREGTVAVVER 153 (189)
T ss_dssp HHHHSSSCCTTCEEEEEE
T ss_pred HHHhcCccCCCeEEEEEe
Confidence 66651 113444444443
No 323
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=39.50 E-value=66 Score=25.03 Aligned_cols=86 Identities=12% Similarity=0.048 Sum_probs=47.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEE-cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAV-ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a-~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~ 169 (213)
.+..|||..-..-+...+...|.+.|+.|... ....+.++.+...... .......+-+|+ -+.+.. .+++.
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl--~~~~~v~~~~~~ 97 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITE-----SGGEAVAIPGDV--GNAADIAAMFSA 97 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----TTCEEEEEECCT--TCHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHh-----cCCcEEEEEcCC--CCHHHHHHHHHH
Confidence 34578888988889999999999899998664 3333333322111000 111333444444 443333 35666
Q ss_pred HHhcCCCCCCcEEEEec
Q 048660 170 IKESSVFREVPVVIMSS 186 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~ 186 (213)
+.+. ...+-+++..+
T Consensus 98 ~~~~--~g~id~li~nA 112 (272)
T 4e3z_A 98 VDRQ--FGRLDGLVNNA 112 (272)
T ss_dssp HHHH--HSCCCEEEECC
T ss_pred HHHh--CCCCCEEEECC
Confidence 6554 23455666544
No 324
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=39.38 E-value=1.6e+02 Score=25.23 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=31.2
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHhhcCCEEEEEcCH-------HHHHHHhhhcCCCCCCCCCCCceeEEEEeCC
Q 048660 92 KELHVLAVDDSY---VDRKLIERLLQISSCKVTAVESG-------TRALQYLGLDGEQSNVGFDALKVNLIITDYT 157 (213)
Q Consensus 92 ~~~~ILvVdD~~---~~~~~l~~~L~~~g~~v~~a~~g-------~eal~~l~~~~~~~~~~~~~~~~dlil~D~~ 157 (213)
.+.+|++++-+. ...+.+..+-...|..+.....+ .++++.+ ....+|+||+|..
T Consensus 124 ~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a-----------~~~~~DvvIIDTa 188 (433)
T 3kl4_A 124 RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF-----------VKNKMDIIIVDTA 188 (433)
T ss_dssp TTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT-----------TTTTCSEEEEEEC
T ss_pred cCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH-----------HhcCCCEEEEECC
Confidence 356888888653 22334444445556655544332 2344443 3457999999973
No 325
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=39.05 E-value=76 Score=24.72 Aligned_cols=66 Identities=9% Similarity=0.030 Sum_probs=37.1
Q ss_pred HHHHHHHHhhcCCEEEEEcC-----HH---HHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCC
Q 048660 106 RKLIERLLQISSCKVTAVES-----GT---RALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFR 177 (213)
Q Consensus 106 ~~~l~~~L~~~g~~v~~a~~-----g~---eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~ 177 (213)
...+...+++.||.+..... .. +.++.+ ....+|-|++--..+. .-...++.+++.
T Consensus 22 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l-----------~~~~vdgiii~~~~~~-~~~~~~~~~~~~---- 85 (297)
T 3rot_A 22 FQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESA-----------LATYPSGIATTIPSDT-AFSKSLQRANKL---- 85 (297)
T ss_dssp HHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHH-----------HHTCCSEEEECCCCSS-TTHHHHHHHHHH----
T ss_pred HHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHH-----------HHcCCCEEEEeCCCHH-HHHHHHHHHHHC----
Confidence 44455667778998877652 23 334433 2345787776432222 114466666654
Q ss_pred CCcEEEEecC
Q 048660 178 EVPVVIMSSE 187 (213)
Q Consensus 178 ~~pII~lt~~ 187 (213)
.+|+|.+...
T Consensus 86 giPvV~~~~~ 95 (297)
T 3rot_A 86 NIPVIAVDTR 95 (297)
T ss_dssp TCCEEEESCC
T ss_pred CCCEEEEcCC
Confidence 6788877543
No 326
>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2
Probab=38.85 E-value=47 Score=25.64 Aligned_cols=82 Identities=7% Similarity=-0.027 Sum_probs=49.6
Q ss_pred CccEEEEEeCC--HHHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-H
Q 048660 92 KELHVLAVDDS--YVDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-E 165 (213)
Q Consensus 92 ~~~~ILvVdD~--~~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e 165 (213)
+..+|||..-. .-+...+...|.+.|++|..+ ....+.++.+.... .....+-+|+. +.+.. .
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---------~~~~~~~~Dv~--~~~~v~~ 81 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF---------GSELVFPCDVA--DDAQIDA 81 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT---------TCCCEEECCTT--CHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHc---------CCcEEEECCCC--CHHHHHH
Confidence 45689999866 778888888888889988876 33344555443211 12345555653 33333 3
Q ss_pred HHHHHHhcCCCCCCcEEEEec
Q 048660 166 LLKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 166 ~~~~ir~~~~~~~~pII~lt~ 186 (213)
+++.+.+. ...+-+++..+
T Consensus 82 ~~~~~~~~--~g~id~lv~nA 100 (271)
T 3ek2_A 82 LFASLKTH--WDSLDGLVHSI 100 (271)
T ss_dssp HHHHHHHH--CSCEEEEEECC
T ss_pred HHHHHHHH--cCCCCEEEECC
Confidence 56666655 34556666554
No 327
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=38.44 E-value=78 Score=26.50 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=37.9
Q ss_pred ceeEEEEeCCCCCCC-HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 148 KVNLIITDYTMPGMT-GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~dlil~D~~mp~~~-G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..|+|.+|....... -.+.++.+++. . .+||++- .-...+....+.++|+|....
T Consensus 117 Gad~I~ld~a~G~~~~~~~~i~~i~~~--~-~~~Vivg-~v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 117 GVDVIVLDSAHGHSLNIIRTLKEIKSK--M-NIDVIVG-NVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHHH--C-CCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred CcCeEEEeCCCCCcHHHHHHHHHHHHh--c-CCcEEEc-cCCCHHHHHHHHHcCcCEEEE
Confidence 578999887654322 24677888875 3 6787752 234577889999999987654
No 328
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=38.40 E-value=1.3e+02 Score=23.31 Aligned_cols=66 Identities=18% Similarity=0.076 Sum_probs=33.8
Q ss_pred HHHHHHHHhhcCCEEEE-Ec---CHHH---HHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCC
Q 048660 106 RKLIERLLQISSCKVTA-VE---SGTR---ALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFRE 178 (213)
Q Consensus 106 ~~~l~~~L~~~g~~v~~-a~---~g~e---al~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~ 178 (213)
...+...+++.||.+.. .. +... .++.+ ....+|-||+--..+. ...+.++.+++. .
T Consensus 23 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l-----------~~~~vdgiIi~~~~~~-~~~~~~~~~~~~----~ 86 (305)
T 3g1w_A 23 LKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQA-----------IAKNPAGIAISAIDPV-ELTDTINKAVDA----G 86 (305)
T ss_dssp HHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHH-----------HHHCCSEEEECCSSTT-TTHHHHHHHHHT----T
T ss_pred HHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHH-----------HHhCCCEEEEcCCCHH-HHHHHHHHHHHC----C
Confidence 34455556777888776 32 2222 33333 2235776666332221 123456666543 5
Q ss_pred CcEEEEecC
Q 048660 179 VPVVIMSSE 187 (213)
Q Consensus 179 ~pII~lt~~ 187 (213)
+|+|.+...
T Consensus 87 iPvV~~~~~ 95 (305)
T 3g1w_A 87 IPIVLFDSG 95 (305)
T ss_dssp CCEEEESSC
T ss_pred CcEEEECCC
Confidence 777777543
No 329
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=38.31 E-value=98 Score=23.62 Aligned_cols=54 Identities=9% Similarity=-0.140 Sum_probs=39.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEE-EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTA-VESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM 158 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~-a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m 158 (213)
-+|..||-++...+..++.....+..+.. ..+.++.+..+ ....||.|+.|...
T Consensus 84 ~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~-----------~~~~FD~i~~D~~~ 138 (236)
T 3orh_A 84 DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL-----------PDGHFDGILYDTYP 138 (236)
T ss_dssp EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS-----------CTTCEEEEEECCCC
T ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccc-----------cccCCceEEEeeee
Confidence 47889999999999999988888876654 45555444333 45679999999643
No 330
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=38.17 E-value=1.2e+02 Score=23.56 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=27.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCEEEEE
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCKVTAV 123 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a 123 (213)
..+.++||..-..-+-..+.+.|.+.|+.|..+
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~ 61 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEGAAVALT 61 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 345689999999888899999998899998776
No 331
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=38.00 E-value=35 Score=27.28 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=25.4
Q ss_pred CcEEEEecC------CCHHHHHHHHHcCCCeeeeCCCCCC
Q 048660 179 VPVVIMSSE------DVLTQIDSCLEEGAEEYIVKPVKLS 212 (213)
Q Consensus 179 ~pII~lt~~------~~~~~~~~~~~~G~~~~L~KP~~~~ 212 (213)
+|+++||-. .-.....+|.++|++++|.--+..+
T Consensus 89 ~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~e 128 (252)
T 3tha_A 89 KALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFE 128 (252)
T ss_dssp SEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGG
T ss_pred CCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHH
Confidence 799998874 3345778899999999987654443
No 332
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=37.89 E-value=1.1e+02 Score=21.78 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=46.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC--EE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC--KV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~--~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
..+|..+|-++...+..+..+...+. .+ ....|..+.+..+.. ....||+|++|...-..+..+.++.
T Consensus 67 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---------~~~~fD~i~~~~~~~~~~~~~~~~~ 137 (187)
T 2fhp_A 67 MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE---------EKLQFDLVLLDPPYAKQEIVSQLEK 137 (187)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH---------TTCCEEEEEECCCGGGCCHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh---------cCCCCCEEEECCCCCchhHHHHHHH
Confidence 35899999999999999988887664 23 345666665543311 2347999999854223455566666
Q ss_pred HH
Q 048660 170 IK 171 (213)
Q Consensus 170 ir 171 (213)
+.
T Consensus 138 l~ 139 (187)
T 2fhp_A 138 ML 139 (187)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 333
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=37.68 E-value=70 Score=24.27 Aligned_cols=89 Identities=11% Similarity=0.084 Sum_probs=51.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKI 170 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~i 170 (213)
.+.++||..-..-+...+.+.|.+.|++|..+....+.++.+...... .......++.+|+...+.+.. ++.+.+
T Consensus 13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~d~d~~~~~~~~~~~~~~ 88 (247)
T 3i1j_A 13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKS----AGQPQPLIIALNLENATAQQYRELAARV 88 (247)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----TTSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHh----cCCCCceEEEeccccCCHHHHHHHHHHH
Confidence 356789999888888889898988999887664433333322110000 011234556666655554443 355666
Q ss_pred HhcCCCCCCcEEEEec
Q 048660 171 KESSVFREVPVVIMSS 186 (213)
Q Consensus 171 r~~~~~~~~pII~lt~ 186 (213)
.+. ...+-+++..+
T Consensus 89 ~~~--~g~id~lv~nA 102 (247)
T 3i1j_A 89 EHE--FGRLDGLLHNA 102 (247)
T ss_dssp HHH--HSCCSEEEECC
T ss_pred HHh--CCCCCEEEECC
Confidence 554 23455666544
No 334
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=37.62 E-value=1e+02 Score=25.13 Aligned_cols=67 Identities=10% Similarity=0.006 Sum_probs=45.0
Q ss_pred EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHH
Q 048660 119 KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLE 198 (213)
Q Consensus 119 ~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~ 198 (213)
..+.+.+.+|+.+.++. ..|+|.+|-.-| -++-+.++.. ..+ ..+..|+.-+.+......+
T Consensus 201 IeVEv~tl~ea~eAl~a------------GaD~I~LDn~~~----~~l~~av~~~--~~~-v~ieaSGGIt~~~i~~~a~ 261 (287)
T 3tqv_A 201 VEVEVTNLDELNQAIAA------------KADIVMLDNFSG----EDIDIAVSIA--RGK-VALEVSGNIDRNSIVAIAK 261 (287)
T ss_dssp EEEEESSHHHHHHHHHT------------TCSEEEEESCCH----HHHHHHHHHH--TTT-CEEEEESSCCTTTHHHHHT
T ss_pred EEEEeCCHHHHHHHHHc------------CCCEEEEcCCCH----HHHHHHHHhh--cCC-ceEEEECCCCHHHHHHHHH
Confidence 44578999999998842 479999995323 2222222222 123 4566888888888999999
Q ss_pred cCCCee
Q 048660 199 EGAEEY 204 (213)
Q Consensus 199 ~G~~~~ 204 (213)
.|+|.+
T Consensus 262 tGVD~I 267 (287)
T 3tqv_A 262 TGVDFI 267 (287)
T ss_dssp TTCSEE
T ss_pred cCCCEE
Confidence 999754
No 335
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=37.54 E-value=93 Score=20.97 Aligned_cols=40 Identities=10% Similarity=0.125 Sum_probs=30.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhh
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLG 134 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~ 134 (213)
-|++..-++......+.++++.||.|.++.+.++.-+.+.
T Consensus 4 vivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsie 43 (134)
T 2l69_A 4 VIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIE 43 (134)
T ss_dssp EEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHH
Confidence 3455556666677788899999999999999888766554
No 336
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}
Probab=37.51 E-value=97 Score=23.87 Aligned_cols=85 Identities=16% Similarity=0.158 Sum_probs=47.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~ir 171 (213)
+.++||..-..-+-..+.+.|.+.|++|..+....+.++.+...... .......+-+|+ -+.+.. ++++.+.
T Consensus 6 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dv--~~~~~v~~~~~~~~ 78 (257)
T 3imf_A 6 EKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQ-----FPGQILTVQMDV--RNTDDIQKMIEQID 78 (257)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-----STTCEEEEECCT--TCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCcEEEEEccC--CCHHHHHHHHHHHH
Confidence 45788888888888888888888899887665433433333211100 112333444454 333333 3556665
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+. ...+-+++..+
T Consensus 79 ~~--~g~id~lv~nA 91 (257)
T 3imf_A 79 EK--FGRIDILINNA 91 (257)
T ss_dssp HH--HSCCCEEEECC
T ss_pred HH--cCCCCEEEECC
Confidence 54 33455666544
No 337
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=37.48 E-value=1.8e+02 Score=24.28 Aligned_cols=77 Identities=17% Similarity=0.134 Sum_probs=48.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc---------------CCE-EE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEe
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQIS---------------SCK-VT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~---------------g~~-v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D 155 (213)
..+|..+|-++...+.+++-++.. |.. +. ...|..+.+... ...||+|++|
T Consensus 71 ~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~------------~~~fD~I~lD 138 (378)
T 2dul_A 71 AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER------------HRYFHFIDLD 138 (378)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS------------TTCEEEEEEC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhc------------cCCCCEEEeC
Confidence 357999999999999999998877 653 43 446666655432 2369999998
Q ss_pred CCCCCCCHHHHHHHHHhcCCCCCCcEEEEec
Q 048660 156 YTMPGMTGYELLKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 156 ~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~ 186 (213)
- |+ +..+++....+.- ..--++.+|.
T Consensus 139 P--~~-~~~~~l~~a~~~l--k~gG~l~vt~ 164 (378)
T 2dul_A 139 P--FG-SPMEFLDTALRSA--KRRGILGVTA 164 (378)
T ss_dssp C--SS-CCHHHHHHHHHHE--EEEEEEEEEE
T ss_pred C--CC-CHHHHHHHHHHhc--CCCCEEEEEe
Confidence 4 33 3345554443221 1112566665
No 338
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=37.48 E-value=24 Score=28.63 Aligned_cols=69 Identities=14% Similarity=0.142 Sum_probs=37.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhc------CCEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH--
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQIS------SCKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-- 163 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~------g~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-- 163 (213)
..+|..||=++...+..++.+... +-++ ....|+.+.+.. ....||+|++|..-|....
T Consensus 107 ~~~V~~VDid~~vi~~ar~~~~~~~~~~~~~~rv~~~~~D~~~~l~~------------~~~~fDvIi~D~~~p~~~~~~ 174 (294)
T 3adn_A 107 VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ------------TSQTFDVIISDCTDPIGPGES 174 (294)
T ss_dssp CCEEEEECSCTTHHHHHHHHCHHHHSSCTTCTTCCEECSCSCC---C------------CCCCEEEEEECC---------
T ss_pred CCEEEEEECCHHHHHHHHHhhhhcccccccCCceEEEEChHHHHHhh------------cCCCccEEEECCCCccCcchh
Confidence 457888998888888888877543 1122 223443333221 2357999999987664322
Q ss_pred ---HHHHHHHHhc
Q 048660 164 ---YELLKKIKES 173 (213)
Q Consensus 164 ---~e~~~~ir~~ 173 (213)
.++.+.+++.
T Consensus 175 l~~~~f~~~~~~~ 187 (294)
T 3adn_A 175 LFTSAFYEGCKRC 187 (294)
T ss_dssp -CCHHHHHHHHHT
T ss_pred ccHHHHHHHHHHh
Confidence 5567777653
No 339
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1
Probab=37.43 E-value=42 Score=29.17 Aligned_cols=40 Identities=10% Similarity=0.111 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
+++++.+++.- ..++|||...+-.+.++..+++.+||+..
T Consensus 360 l~~i~~v~~~v-~~~iPVIg~GGI~s~~DA~e~l~aGAd~V 399 (443)
T 1tv5_A 360 TKFICEMYNYT-NKQIPIIASGGIFSGLDALEKIEAGASVC 399 (443)
T ss_dssp HHHHHHHHHHT-TTCSCEEEESSCCSHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHc-CCCCcEEEECCCCCHHHHHHHHHcCCCEE
Confidence 46788888752 24799999999999999999999998765
No 340
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=37.36 E-value=86 Score=24.95 Aligned_cols=86 Identities=8% Similarity=0.007 Sum_probs=49.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKI 170 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~i 170 (213)
.+.+|||..-..-+...+...|.+.|++|..+....+.++.+...... .......+.+|+. +.+.. ++++.+
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dv~--d~~~v~~~~~~~ 102 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRG-----QGFDAHGVVCDVR--HLDEMVRLADEA 102 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTT--CHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----cCCceEEEEccCC--CHHHHHHHHHHH
Confidence 356899999999999999999988999987664433333322111000 1123445555553 33333 355666
Q ss_pred HhcCCCCCCcEEEEec
Q 048660 171 KESSVFREVPVVIMSS 186 (213)
Q Consensus 171 r~~~~~~~~pII~lt~ 186 (213)
.+. ...+-+++..+
T Consensus 103 ~~~--~g~id~lvnnA 116 (301)
T 3tjr_A 103 FRL--LGGVDVVFSNA 116 (301)
T ss_dssp HHH--HSSCSEEEECC
T ss_pred HHh--CCCCCEEEECC
Confidence 554 23455666654
No 341
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=37.31 E-value=79 Score=20.94 Aligned_cols=40 Identities=10% Similarity=-0.017 Sum_probs=32.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHh
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYL 133 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l 133 (213)
..|+++.............|+..||+|.....|-.++...
T Consensus 56 ~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~W~~~ 95 (108)
T 3gk5_A 56 KKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQSWIEE 95 (108)
T ss_dssp SCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHHHHHT
T ss_pred CeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHHHHHc
Confidence 4677777776667778888999999999999998887653
No 342
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=37.23 E-value=1.6e+02 Score=23.45 Aligned_cols=88 Identities=10% Similarity=0.036 Sum_probs=52.1
Q ss_pred cEEEEEeCC-HHHHHHHHHHHhhcCCEEEEE-------cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHH
Q 048660 94 LHVLAVDDS-YVDRKLIERLLQISSCKVTAV-------ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYE 165 (213)
Q Consensus 94 ~~ILvVdD~-~~~~~~l~~~L~~~g~~v~~a-------~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e 165 (213)
..+++.+++ ..-+.....+.+..|..++.. .|-...+..+ ....+|+|++-. ...++..
T Consensus 145 ~~~~~~~~~~~yg~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i-----------~~~~~d~v~~~~--~~~~~~~ 211 (353)
T 4gnr_A 145 KVVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKM-----------KGKDFDAIVVPG--YYNEAGK 211 (353)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHCCSEEEEEEEECTTCCCCHHHHHHH-----------HTSCCSEEECCS--CHHHHHH
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHH-----------HhcCCCEEEEec--CcHHHHH
Confidence 345555654 344555555556667765432 3556667766 345789998643 2335667
Q ss_pred HHHHHHhcCCCCCCcEEEEecCCCHHHHHHH
Q 048660 166 LLKKIKESSVFREVPVVIMSSEDVLTQIDSC 196 (213)
Q Consensus 166 ~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~ 196 (213)
+++++++.. -..+++...+.........+
T Consensus 212 ~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~ 240 (353)
T 4gnr_A 212 IVNQARGMG--IDKPIVGGDGFNGEEFVQQA 240 (353)
T ss_dssp HHHHHHHTT--CCSCEEECGGGCSHHHHHHH
T ss_pred HHHHHHHcC--CCCcEEEecccccchhhhhh
Confidence 788888763 45677766666665554443
No 343
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=37.22 E-value=76 Score=24.26 Aligned_cols=82 Identities=11% Similarity=-0.003 Sum_probs=48.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEc-----CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-HH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVE-----SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-YE 165 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~-----~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-~e 165 (213)
+..+|||..-..-+...+...|.+.|+.|.... ...+.++.+... ......+-+|+ -+.+. ..
T Consensus 12 ~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~Dv--~~~~~v~~ 80 (256)
T 3ezl_A 12 SQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKAL---------GFDFYASEGNV--GDWDSTKQ 80 (256)
T ss_dssp -CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHT---------TCCCEEEECCT--TCHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc---------CCeeEEEecCC--CCHHHHHH
Confidence 456888888888888888888888999887643 233444444221 12334444554 34333 33
Q ss_pred HHHHHHhcCCCCCCcEEEEec
Q 048660 166 LLKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 166 ~~~~ir~~~~~~~~pII~lt~ 186 (213)
+++.+.+. ...+-+++..+
T Consensus 81 ~~~~~~~~--~g~id~lv~~A 99 (256)
T 3ezl_A 81 AFDKVKAE--VGEIDVLVNNA 99 (256)
T ss_dssp HHHHHHHH--TCCEEEEEECC
T ss_pred HHHHHHHh--cCCCCEEEECC
Confidence 56666655 34556666654
No 344
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=37.18 E-value=27 Score=25.81 Aligned_cols=90 Identities=13% Similarity=0.083 Sum_probs=51.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC----C---
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM----T--- 162 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~----~--- 162 (213)
....+|+++.|+-...-.+...|... +.+ -..-+|....+.+..... ......||+|++-+..-+. +
T Consensus 32 ~~~~~i~~~GDSit~g~~~~~~l~~~-~~v~n~g~~G~~~~~~~~~l~~----~~~~~~pd~vvi~~G~ND~~~~~~~~~ 106 (214)
T 2hsj_A 32 VVEPNILFIGDSIVEYYPLQELFGTS-KTIVNRGIRGYQTGLLLENLDA----HLYGGAVDKIFLLIGTNDIGKDVPVNE 106 (214)
T ss_dssp SSCCSEEEEESHHHHTCCHHHHHCSS-SCEEEEECTTCCHHHHHHTGGG----GCCCSCCCEEEEECCHHHHHTTCCHHH
T ss_pred cccCCEEEEecchhcCCCHHHHcCCc-ceEEecCccchhHHHHHHHhhH----HHHhcCCCEEEEEEecCcCCcCCCHHH
Confidence 44678999999987766677777643 333 344444444333321111 1134578999986633221 1
Q ss_pred ----HHHHHHHHHhcCCCCCCcEEEEecC
Q 048660 163 ----GYELLKKIKESSVFREVPVVIMSSE 187 (213)
Q Consensus 163 ----G~e~~~~ir~~~~~~~~pII~lt~~ 187 (213)
=..+++.+++. .+..+|++++..
T Consensus 107 ~~~~l~~~i~~l~~~--~p~~~iil~~~~ 133 (214)
T 2hsj_A 107 ALNNLEAIIQSVARD--YPLTEIKLLSIL 133 (214)
T ss_dssp HHHHHHHHHHHHHHH--CTTCEEEEECCC
T ss_pred HHHHHHHHHHHHHHh--CCCCeEEEEecC
Confidence 11245666665 456788887754
No 345
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*
Probab=37.12 E-value=98 Score=23.91 Aligned_cols=31 Identities=13% Similarity=-0.052 Sum_probs=25.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEE
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAV 123 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a 123 (213)
+.++||..-.--+-..+.+.|.+.|++|...
T Consensus 4 ~k~vlVTGas~gIG~aia~~l~~~G~~vv~~ 34 (258)
T 3oid_A 4 NKCALVTGSSRGVGKAAAIRLAENGYNIVIN 34 (258)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEE
Confidence 4578888888888888888888899988764
No 346
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=37.02 E-value=1.1e+02 Score=27.08 Aligned_cols=53 Identities=17% Similarity=0.343 Sum_probs=39.3
Q ss_pred EEEEeCCCCCC---CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHH-cCCCeeee
Q 048660 151 LIITDYTMPGM---TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLE-EGAEEYIV 206 (213)
Q Consensus 151 lil~D~~mp~~---~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~-~G~~~~L~ 206 (213)
+++.|+.-.++ -.+++++.+++. ..+|||+-.+-.+.++..++++ .|+++.+.
T Consensus 469 il~t~~~~dG~~~G~d~~li~~l~~~---~~iPVIasGGi~s~~d~~~~~~~~G~~gviv 525 (555)
T 1jvn_A 469 ILLNCIDKDGSNSGYDLELIEHVKDA---VKIPVIASSGAGVPEHFEEAFLKTRADACLG 525 (555)
T ss_dssp EEECCGGGTTTCSCCCHHHHHHHHHH---CSSCEEECSCCCSHHHHHHHHHHSCCSEEEE
T ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHh---CCccEEEECCCCCHHHHHHHHHhcCChHHHH
Confidence 55566533222 237889999874 4789998888889999999998 89998754
No 347
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=36.98 E-value=23 Score=32.34 Aligned_cols=87 Identities=8% Similarity=0.030 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhcCCEEEEE---cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-CC-HHHHHHHHHhcCCCCC
Q 048660 104 VDRKLIERLLQISSCKVTAV---ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-MT-GYELLKKIKESSVFRE 178 (213)
Q Consensus 104 ~~~~~l~~~L~~~g~~v~~a---~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-~~-G~e~~~~ir~~~~~~~ 178 (213)
.-...+..+|+..||.|+.. .+ ++..+.+. +..+|+|.+-..+.. +. .-++++.|++.+.
T Consensus 525 ~ga~~va~~l~~aGfeVi~~g~~~t-ee~v~aa~-----------e~~adiv~lSsl~~~~~~~~~~v~~~Lk~aG~--- 589 (637)
T 1req_B 525 GREGFSSPVWHIAGIDTPQVEGGTT-AEIVEAFK-----------KSGAQVADLCSSAKVYAQQGLEVAKALKAAGA--- 589 (637)
T ss_dssp HHHHHHHHHHHHTTCBCCEEECCCH-HHHHHHHH-----------HHTCSEEEEECCHHHHHHHHHHHHHHHHHTTC---
T ss_pred hhHHHHHHHHHhCCeeEEeCCCCCC-HHHHHHHH-----------hcCCCEEEEecccHHHHHHHHHHHHHHHhCCC---
Confidence 34456677889999988753 34 67777663 335788887654432 22 3567888887642
Q ss_pred CcEEEEecCCCH--HHHHHHHHcCCCeeeeC
Q 048660 179 VPVVIMSSEDVL--TQIDSCLEEGAEEYIVK 207 (213)
Q Consensus 179 ~pII~lt~~~~~--~~~~~~~~~G~~~~L~K 207 (213)
..|++.+.... +....+.+ |+|+|+.-
T Consensus 590 -~~V~vgG~P~~d~~~~~~~~~-G~D~~~~~ 618 (637)
T 1req_B 590 -KALYLSGAFKEFGDDAAEAEK-LIDGRLFM 618 (637)
T ss_dssp -SEEEEESCGGGGGGGHHHHHH-HCCCEECT
T ss_pred -CeEEEeCCCCccchhhHHHHh-ccceEecC
Confidence 33556664321 12345666 99999753
No 348
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=36.88 E-value=1.3e+02 Score=22.62 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=53.4
Q ss_pred hhcccCCCcchhhhhhhhcCCccEEEEEeCCHHHHHHHHHHHhhcCC--EE-EEEcCHHHHHH-HhhhcCCCCCCCCCCC
Q 048660 72 FKETNRGFPFWAMATVAECSKELHVLAVDDSYVDRKLIERLLQISSC--KV-TAVESGTRALQ-YLGLDGEQSNVGFDAL 147 (213)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~g~--~v-~~a~~g~eal~-~l~~~~~~~~~~~~~~ 147 (213)
.-+.+-|.......- .......+|..||-++......+..++..|. .+ ....+..+.+. .+ ..
T Consensus 75 vLDiG~G~G~~~~~l-a~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~------------~~ 141 (232)
T 3ntv_A 75 ILEIGTAIGYSSMQF-ASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN------------DK 141 (232)
T ss_dssp EEEECCSSSHHHHHH-HTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT------------TS
T ss_pred EEEEeCchhHHHHHH-HHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc------------cC
Confidence 334444444333222 2223367899999999999999999988774 23 34456555444 32 24
Q ss_pred ceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 148 KVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 148 ~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
.||+|++|...+. -..+++.+.+
T Consensus 142 ~fD~V~~~~~~~~--~~~~l~~~~~ 164 (232)
T 3ntv_A 142 VYDMIFIDAAKAQ--SKKFFEIYTP 164 (232)
T ss_dssp CEEEEEEETTSSS--HHHHHHHHGG
T ss_pred CccEEEEcCcHHH--HHHHHHHHHH
Confidence 7999999975433 3446666654
No 349
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=36.86 E-value=50 Score=27.49 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=32.2
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
+++++.+++. .+++|||+..+-.+.++..++++ |+|...
T Consensus 185 ~~~i~~ik~~--~~~iPVianGgI~s~eda~~~l~-GaD~V~ 223 (350)
T 3b0p_A 185 HDWVHRLKGD--FPQLTFVTNGGIRSLEEALFHLK-RVDGVM 223 (350)
T ss_dssp HHHHHHHHHH--CTTSEEEEESSCCSHHHHHHHHT-TSSEEE
T ss_pred HHHHHHHHHh--CCCCeEEEECCcCCHHHHHHHHh-CCCEEE
Confidence 6788999876 45899998888888999999997 988764
No 350
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=36.68 E-value=80 Score=20.56 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=30.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRAL 130 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal 130 (213)
...|+++.............|...||++.....|-.++
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~W 93 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHAW 93 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHHHH
Confidence 34677887777667778888999999998888887766
No 351
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=36.66 E-value=1.1e+02 Score=24.89 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=49.8
Q ss_pred CCccEEEEEeCCHHHH-HHHHHHHhhcCCEEEEE--cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHH
Q 048660 91 SKELHVLAVDDSYVDR-KLIERLLQISSCKVTAV--ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELL 167 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~-~~l~~~L~~~g~~v~~a--~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~ 167 (213)
.+.+||.||.--..-+ ..+..+.+..++.+..+ .+.+.+-+..+..+ ... ..|+
T Consensus 25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g-----------~~~-~~~~----------- 81 (350)
T 3rc1_A 25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFG-----------GEP-VEGY----------- 81 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHC-----------SEE-EESH-----------
T ss_pred CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcC-----------CCC-cCCH-----------
Confidence 3468999999877666 34555444447776533 33333333332111 111 1221
Q ss_pred HHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCCCC
Q 048660 168 KKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPVKL 211 (213)
Q Consensus 168 ~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~~~ 211 (213)
+.+-+.. ..++-+|+.......+....++++|..-++-||+..
T Consensus 82 ~~ll~~~-~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~ 124 (350)
T 3rc1_A 82 PALLERD-DVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTT 124 (350)
T ss_dssp HHHHTCT-TCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSCS
T ss_pred HHHhcCC-CCCEEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCC
Confidence 2222211 223323222223345667888899988888999764
No 352
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=36.41 E-value=1.6e+02 Score=23.72 Aligned_cols=86 Identities=13% Similarity=0.015 Sum_probs=49.4
Q ss_pred cEEEEE-eCCHHH---HHHHHHHHhhcCCEEEEE-------cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC
Q 048660 94 LHVLAV-DDSYVD---RKLIERLLQISSCKVTAV-------ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT 162 (213)
Q Consensus 94 ~~ILvV-dD~~~~---~~~l~~~L~~~g~~v~~a-------~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~ 162 (213)
.+|.++ +|+..- .+.++..|++.|..+... .+....+..++ ...+|+|++.. .+.+
T Consensus 144 ~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~-----------~~~~dav~~~~--~~~~ 210 (392)
T 3lkb_A 144 AKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFE-----------QAGVEYVVHQN--VAGP 210 (392)
T ss_dssp CEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHH-----------HTTCCEEEEES--CHHH
T ss_pred CEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHH-----------hcCCCEEEEec--Ccch
Confidence 355555 444432 335666777788876532 24455666653 34689999754 3345
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHH
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDVLTQID 194 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~ 194 (213)
...+++.+++.+ -.+|++......+.....
T Consensus 211 a~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~ 240 (392)
T 3lkb_A 211 VANILKDAKRLG--LKMRHLGAHYTGGPDLIA 240 (392)
T ss_dssp HHHHHHHHHHTT--CCCEEEECGGGCSHHHHH
T ss_pred HHHHHHHHHHcC--CCceEEEecCcccHHHHH
Confidence 666788888763 356776554444444333
No 353
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=36.27 E-value=1e+02 Score=23.68 Aligned_cols=66 Identities=12% Similarity=0.060 Sum_probs=37.3
Q ss_pred HHHHHHHHhhcCCEEEEEcC---HH---HHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCC
Q 048660 106 RKLIERLLQISSCKVTAVES---GT---RALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREV 179 (213)
Q Consensus 106 ~~~l~~~L~~~g~~v~~a~~---g~---eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~ 179 (213)
...+...+++.||.+..... .. +.++.+ ....+|-||+-..-+. .-.+.++.+++. .+
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-----------~~~~vdgiI~~~~~~~-~~~~~~~~~~~~----~i 90 (293)
T 3l6u_A 27 INAFKAEAKANKYEALVATSQNSRISEREQILEF-----------VHLKVDAIFITTLDDV-YIGSAIEEAKKA----GI 90 (293)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHH-----------HHTTCSEEEEECSCTT-TTHHHHHHHHHT----TC
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHH-----------HHcCCCEEEEecCChH-HHHHHHHHHHHc----CC
Confidence 34455667788998877643 22 334444 2346777776432222 122566677653 67
Q ss_pred cEEEEecC
Q 048660 180 PVVIMSSE 187 (213)
Q Consensus 180 pII~lt~~ 187 (213)
|+|++...
T Consensus 91 PvV~~~~~ 98 (293)
T 3l6u_A 91 PVFAIDRM 98 (293)
T ss_dssp CEEEESSC
T ss_pred CEEEecCC
Confidence 88887543
No 354
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Probab=36.20 E-value=87 Score=24.61 Aligned_cols=83 Identities=8% Similarity=0.065 Sum_probs=50.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKE 172 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~ 172 (213)
+.++||..-..-+-..+.+.|.+.|++|..+....+.++.+... .......+.+|+.-+. +-..+++.+.+
T Consensus 5 gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~Dv~~~~-~v~~~~~~~~~ 75 (281)
T 3zv4_A 5 GEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVA--------HGGNAVGVVGDVRSLQ-DQKRAAERCLA 75 (281)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH--------TBTTEEEEECCTTCHH-HHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH--------cCCcEEEEEcCCCCHH-HHHHHHHHHHH
Confidence 45788889888888899999988999988776555555544321 1123445555654222 22335666655
Q ss_pred cCCCCCCcEEEEec
Q 048660 173 SSVFREVPVVIMSS 186 (213)
Q Consensus 173 ~~~~~~~pII~lt~ 186 (213)
. ...+-+++..+
T Consensus 76 ~--~g~iD~lvnnA 87 (281)
T 3zv4_A 76 A--FGKIDTLIPNA 87 (281)
T ss_dssp H--HSCCCEEECCC
T ss_pred h--cCCCCEEEECC
Confidence 4 23455666544
No 355
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=36.09 E-value=99 Score=22.93 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=38.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
+.+|.+.. .......+..++...|. .+..+.+..++++.+ ...+.|+++.|.
T Consensus 148 g~~i~~~~-g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l-----------~~g~vDa~~~~~ 201 (259)
T 2v25_A 148 GANIGVAQ-AATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAAL-----------DAKRVDAFSVDK 201 (259)
T ss_dssp TCEEEEET-TCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHH-----------HTTSSSEEEEEH
T ss_pred CCEEEEec-CCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHH-----------HcCCCcEEEecH
Confidence 45666654 44456677778877775 677889999999998 456789988864
No 356
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=36.03 E-value=1.6e+02 Score=24.37 Aligned_cols=59 Identities=15% Similarity=0.208 Sum_probs=40.2
Q ss_pred ceeEEEEeCCCCCCCHHHHHHHHHhcC--CCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 148 KVNLIITDYTMPGMTGYELLKKIKESS--VFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~dlil~D~~mp~~~G~e~~~~ir~~~--~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+|.|++|+.-...+--.+.+.++... .....++++=+...+..++..++++|+++++.
T Consensus 63 GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gIml 123 (339)
T 1izc_A 63 KPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVI 123 (339)
T ss_dssp CCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEE
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEe
Confidence 589999999775555555555555421 11235666666666788999999999987654
No 357
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=35.95 E-value=1.8e+02 Score=23.77 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=45.8
Q ss_pred EEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHc
Q 048660 120 VTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEE 199 (213)
Q Consensus 120 v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~ 199 (213)
.+.+.+.+++.+.++. ..|+|.+|- |+--++-+.++.. .++ ..|..|+.-+.+...+..+.
T Consensus 213 eVEvdtlde~~eAl~a------------GaD~I~LDn----~~~~~l~~av~~i--~~~-v~ieaSGGI~~~~i~~~a~t 273 (298)
T 3gnn_A 213 QIEVETLDQLRTALAH------------GARSVLLDN----FTLDMMRDAVRVT--EGR-AVLEVSGGVNFDTVRAIAET 273 (298)
T ss_dssp EEEESSHHHHHHHHHT------------TCEEEEEES----CCHHHHHHHHHHH--TTS-EEEEEESSCSTTTHHHHHHT
T ss_pred EEEeCCHHHHHHHHHc------------CCCEEEECC----CCHHHHHHHHHHh--CCC-CeEEEEcCCCHHHHHHHHHc
Confidence 4568999998888742 479999995 3333444344433 233 45668888888899999999
Q ss_pred CCCee
Q 048660 200 GAEEY 204 (213)
Q Consensus 200 G~~~~ 204 (213)
|+|.+
T Consensus 274 GVD~i 278 (298)
T 3gnn_A 274 GVDRI 278 (298)
T ss_dssp TCSEE
T ss_pred CCCEE
Confidence 99655
No 358
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=35.93 E-value=1.4e+02 Score=22.46 Aligned_cols=43 Identities=16% Similarity=-0.021 Sum_probs=27.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEE-EEcCHHHHHHHhhh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVT-AVESGTRALQYLGL 135 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~-~a~~g~eal~~l~~ 135 (213)
..+|+++--.+...+.++.+..+.+.++. ...+.+++++..+.
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~ 47 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFG 47 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHH
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHH
Confidence 34677777777777777777776665554 34566667776643
No 359
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=35.93 E-value=1.3e+02 Score=24.01 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=10.2
Q ss_pred HHHHHHHHhhcCCEEEEE
Q 048660 106 RKLIERLLQISSCKVTAV 123 (213)
Q Consensus 106 ~~~l~~~L~~~g~~v~~a 123 (213)
...+...+++.||.+..+
T Consensus 87 ~~gi~~~a~~~g~~~~~~ 104 (344)
T 3kjx_A 87 LTGINQVLEDTELQPVVG 104 (344)
T ss_dssp HHHHHHHHTSSSSEEEEE
T ss_pred HHHHHHHHHHCCCEEEEE
Confidence 344555556667766554
No 360
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=35.89 E-value=26 Score=26.02 Aligned_cols=78 Identities=18% Similarity=0.109 Sum_probs=45.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC-CCCCCHHHHHHHHHhc
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT-MPGMTGYELLKKIKES 173 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~-mp~~~G~e~~~~ir~~ 173 (213)
.|+|+|-...+...+...|++.|+.+..+.... .++.+. ...+|.|++-=. -|...+. ..+.+++.
T Consensus 2 mi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~-----------~~~~dglil~Gg~~~~~~~~-~~~~i~~~ 68 (189)
T 1wl8_A 2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIK-----------AMNPKGIIFSGGPSLENTGN-CEKVLEHY 68 (189)
T ss_dssp EEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHH-----------HTCCSEEEECCCSCTTCCTT-HHHHHHTG
T ss_pred eEEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhc-----------ccCCCEEEECCCCChhhhhh-HHHHHHHH
Confidence 389999887778889999999999888776543 122221 124666655322 1222221 24445532
Q ss_pred CCCCCCcEEEEec
Q 048660 174 SVFREVPVVIMSS 186 (213)
Q Consensus 174 ~~~~~~pII~lt~ 186 (213)
. ....|++.+..
T Consensus 69 ~-~~~~PilGIC~ 80 (189)
T 1wl8_A 69 D-EFNVPILGICL 80 (189)
T ss_dssp G-GTCSCEEEETH
T ss_pred h-hCCCeEEEEcH
Confidence 1 24688887764
No 361
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=35.83 E-value=1.9e+02 Score=23.94 Aligned_cols=91 Identities=14% Similarity=0.174 Sum_probs=56.3
Q ss_pred EEEEEeCCHHH----HHHHHHHHhhcCC--EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 95 HVLAVDDSYVD----RKLIERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 95 ~ILvVdD~~~~----~~~l~~~L~~~g~--~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
.||+-|++-.. ...++.+-+..++ ..+.+.+.+++.+.++. ..|+|.+|- ++--++-+
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~a------------GaD~I~LDn----~~~~~l~~ 267 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISA------------GADIIMLDN----FSLEMMRE 267 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT------------TCSEEEEES----CCHHHHHH
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHc------------CCCEEEECC----CCHHHHHH
Confidence 36776655332 2333333333343 34678999999888742 468999995 33333333
Q ss_pred HHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 169 KIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
.++.. .++ ..|..|+.-+.+......+.|+|.+
T Consensus 268 av~~l--~~~-v~ieaSGGIt~~~I~~~a~tGVD~i 300 (320)
T 3paj_A 268 AVKIN--AGR-AALENSGNITLDNLKECAETGVDYI 300 (320)
T ss_dssp HHHHH--TTS-SEEEEESSCCHHHHHHHHTTTCSEE
T ss_pred HHHHh--CCC-CeEEEECCCCHHHHHHHHHcCCCEE
Confidence 33322 133 4566888889999999999999765
No 362
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*
Probab=35.80 E-value=1.5e+02 Score=22.90 Aligned_cols=92 Identities=15% Similarity=0.213 Sum_probs=55.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EEcCHHHHHHHhhhcCCCCCCCCCCC-ceeEEEEeCCCCCCCHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSC--KVT-AVESGTRALQYLGLDGEQSNVGFDAL-KVNLIITDYTMPGMTGYEL 166 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~l~~~~~~~~~~~~~~-~~dlil~D~~mp~~~G~e~ 166 (213)
....+|.-+|-++...+..+.-++..|. .+. ...|+.+.+ ... .||+|++- +|.|--+
T Consensus 37 ~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l--------------~~~~~~D~Ivia----G~Gg~~i 98 (225)
T 3kr9_A 37 GQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAF--------------EETDQVSVITIA----GMGGRLI 98 (225)
T ss_dssp TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC--------------CGGGCCCEEEEE----EECHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhc--------------ccCcCCCEEEEc----CCChHHH
Confidence 3456899999999999999999988876 243 445543322 222 58988863 4555222
Q ss_pred HHHHHhcC-CCCCCcEEEEecCCCHHHHHHHHH-cC
Q 048660 167 LKKIKESS-VFREVPVVIMSSEDVLTQIDSCLE-EG 200 (213)
Q Consensus 167 ~~~ir~~~-~~~~~pII~lt~~~~~~~~~~~~~-~G 200 (213)
.+.|.+.. .......+++.+........+++. .|
T Consensus 99 ~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L~~~G 134 (225)
T 3kr9_A 99 ARILEEGLGKLANVERLILQPNNREDDLRIWLQDHG 134 (225)
T ss_dssp HHHHHHTGGGCTTCCEEEEEESSCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHCC
Confidence 22232211 123345677788777777666664 44
No 363
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=35.68 E-value=1.4e+02 Score=22.65 Aligned_cols=80 Identities=10% Similarity=0.023 Sum_probs=47.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-HHHHHHHHh
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-YELLKKIKE 172 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-~e~~~~ir~ 172 (213)
.+|||..-..-+-..+...|.+.|++|..+....+.++.+... ......+-+|+. +.+. -++++.+.+
T Consensus 3 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~---------~~~~~~~~~Dv~--~~~~v~~~~~~~~~ 71 (247)
T 3dii_A 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE---------RPNLFYFHGDVA--DPLTLKKFVEYAME 71 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT---------CTTEEEEECCTT--SHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---------cccCCeEEeeCC--CHHHHHHHHHHHHH
Confidence 4688888888888888888888999987765444444443221 112334555553 3222 235555655
Q ss_pred cCCCCCCcEEEEec
Q 048660 173 SSVFREVPVVIMSS 186 (213)
Q Consensus 173 ~~~~~~~pII~lt~ 186 (213)
. ...+-+++..+
T Consensus 72 ~--~g~id~lv~nA 83 (247)
T 3dii_A 72 K--LQRIDVLVNNA 83 (247)
T ss_dssp H--HSCCCEEEECC
T ss_pred H--cCCCCEEEECC
Confidence 4 23455666655
No 364
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=35.56 E-value=82 Score=24.35 Aligned_cols=85 Identities=9% Similarity=0.006 Sum_probs=47.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~ir 171 (213)
+.+|||..-..-+...+...|.+.|++|..+....+.++.+...... .......+-+|+ -+.+.. .+++.+.
T Consensus 29 ~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~D~--~~~~~v~~~~~~~~ 101 (262)
T 3rkr_A 29 GQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVA-----AGGEAESHACDL--SHSDAIAAFATGVL 101 (262)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----TTCEEEEEECCT--TCHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-----hCCceeEEEecC--CCHHHHHHHHHHHH
Confidence 45789999888888888888888899887664333333322111000 112344444554 343333 3555555
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+. ...+-+++..+
T Consensus 102 ~~--~g~id~lv~~A 114 (262)
T 3rkr_A 102 AA--HGRCDVLVNNA 114 (262)
T ss_dssp HH--HSCCSEEEECC
T ss_pred Hh--cCCCCEEEECC
Confidence 54 23455666544
No 365
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=35.51 E-value=1e+02 Score=26.76 Aligned_cols=53 Identities=6% Similarity=-0.028 Sum_probs=39.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCE-EE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCK-VT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT 157 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~-v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~ 157 (213)
..+|..+|-++...+.++..+++.|.. +. ...|..+..... ...||+||+|.-
T Consensus 130 ~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~------------~~~FD~Il~DaP 184 (456)
T 3m4x_A 130 KGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHF------------SGFFDRIVVDAP 184 (456)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHH------------TTCEEEEEEECC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhc------------cccCCEEEECCC
Confidence 458999999999999999999988863 43 345665554333 237999999974
No 366
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=35.42 E-value=84 Score=24.50 Aligned_cols=22 Identities=9% Similarity=0.220 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecC
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSE 187 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~ 187 (213)
|..+++.|.+. .+..|.++++.
T Consensus 119 ~~~a~~~L~~~---G~~~I~~i~~~ 140 (295)
T 3hcw_A 119 SENLTRHVIEQ---GVDELIFITEK 140 (295)
T ss_dssp HHHHHHHHHHH---CCSEEEEEEES
T ss_pred HHHHHHHHHHc---CCccEEEEcCC
Confidence 44455555543 46666666654
No 367
>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0
Probab=35.40 E-value=1.2e+02 Score=23.65 Aligned_cols=86 Identities=19% Similarity=0.086 Sum_probs=50.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEE-cCHHH---HHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAV-ESGTR---ALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELL 167 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a-~~g~e---al~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~ 167 (213)
.+.+|||..-..-+...+.+.|.+.|++|..+ .+... +++.+... .......+-+|+.-+.-+--.+.
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--------~~~~~~~~~~Dl~~~~~~v~~~~ 82 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS--------NHENVVFHQLDVTDPIATMSSLA 82 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT--------TCCSEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------CCCceEEEEccCCCcHHHHHHHH
Confidence 34578888988888888888888889988765 44433 33333211 11234455555543312233456
Q ss_pred HHHHhcCCCCCCcEEEEecC
Q 048660 168 KKIKESSVFREVPVVIMSSE 187 (213)
Q Consensus 168 ~~ir~~~~~~~~pII~lt~~ 187 (213)
+.+.+. ...+-+++..+.
T Consensus 83 ~~~~~~--~g~iD~lv~nAg 100 (311)
T 3o26_A 83 DFIKTH--FGKLDILVNNAG 100 (311)
T ss_dssp HHHHHH--HSSCCEEEECCC
T ss_pred HHHHHh--CCCCCEEEECCc
Confidence 666654 335667776654
No 368
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=35.40 E-value=1.2e+02 Score=21.77 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=29.8
Q ss_pred ceeEEEEeCCCCCCC-HHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 148 KVNLIITDYTMPGMT-GYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 148 ~~dlil~D~~mp~~~-G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
..|+|++-+ |+.. -..++..++.. .+...|++.+. +......+.+.|++..+
T Consensus 105 ~ad~vi~~~--~~~~~~~~~~~~~~~~--~~~~~ii~~~~--~~~~~~~l~~~G~~~vi 157 (183)
T 3c85_A 105 HVKLVLLAM--PHHQGNQTALEQLQRR--NYKGQIAAIAE--YPDQLEGLLESGVDAAF 157 (183)
T ss_dssp CCCEEEECC--SSHHHHHHHHHHHHHT--TCCSEEEEEES--SHHHHHHHHHHTCSEEE
T ss_pred CCCEEEEeC--CChHHHHHHHHHHHHH--CCCCEEEEEEC--CHHHHHHHHHcCCCEEE
Confidence 578888643 3322 23345566654 34566666554 34555666788987554
No 369
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=35.20 E-value=77 Score=24.77 Aligned_cols=80 Identities=9% Similarity=0.060 Sum_probs=49.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKI 170 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~i 170 (213)
.+.++||..-..-+...+...|.+.|++|..+....+.++.+ .......+-+|+ -+.+.. ++++.+
T Consensus 15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~-----------~~~~~~~~~~Dv--~d~~~v~~~~~~~ 81 (266)
T 3p19_A 15 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKAL-----------NLPNTLCAQVDV--TDKYTFDTAITRA 81 (266)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTT-----------CCTTEEEEECCT--TCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHh-----------hcCCceEEEecC--CCHHHHHHHHHHH
Confidence 345799999999999999999998999888765555555544 222334444554 333332 345555
Q ss_pred HhcCCCCCCcEEEEec
Q 048660 171 KESSVFREVPVVIMSS 186 (213)
Q Consensus 171 r~~~~~~~~pII~lt~ 186 (213)
.+. ...+-+++..+
T Consensus 82 ~~~--~g~iD~lvnnA 95 (266)
T 3p19_A 82 EKI--YGPADAIVNNA 95 (266)
T ss_dssp HHH--HCSEEEEEECC
T ss_pred HHH--CCCCCEEEECC
Confidence 544 23455666544
No 370
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=35.15 E-value=91 Score=24.40 Aligned_cols=38 Identities=16% Similarity=0.059 Sum_probs=27.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRAL 130 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal 130 (213)
+.++||..-..-+...+...|.+.|++|..+....+.+
T Consensus 4 ~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~ 41 (264)
T 3tfo_A 4 DKVILITGASGGIGEGIARELGVAGAKILLGARRQARI 41 (264)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 34688888888888888888888899887664433333
No 371
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}
Probab=34.94 E-value=93 Score=23.84 Aligned_cols=82 Identities=9% Similarity=0.029 Sum_probs=48.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-HHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-YELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-~e~~~~ir 171 (213)
+.++||..-..-+-..+.+.|.+.|++|..+....+.++.+... .......+-+|+ -+.+. .++++.+.
T Consensus 9 ~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~D~--~~~~~~~~~~~~~~ 78 (261)
T 3n74_A 9 GKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGE--------IGDAALAVAADI--SKEADVDAAVEAAL 78 (261)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH--------HCTTEEEEECCT--TSHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH--------hCCceEEEEecC--CCHHHHHHHHHHHH
Confidence 45799999888888888888888899887665444444433221 112344555555 33333 23556665
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+. ...+-+++..+
T Consensus 79 ~~--~g~id~li~~A 91 (261)
T 3n74_A 79 SK--FGKVDILVNNA 91 (261)
T ss_dssp HH--HSCCCEEEECC
T ss_pred Hh--cCCCCEEEECC
Confidence 54 23455666554
No 372
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, infectious diseases; 2.10A {Vibrio cholerae}
Probab=34.90 E-value=1.3e+02 Score=23.67 Aligned_cols=21 Identities=10% Similarity=0.181 Sum_probs=12.2
Q ss_pred ccceeeeeeeccccccCcccC
Q 048660 11 EPICVQFKPYKSQKSCSTTLN 31 (213)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~ 31 (213)
|--++.+-+|.=.++..+..+
T Consensus 39 ~~~al~~G~F~L~SG~~Sp~y 59 (238)
T 3n2l_A 39 EKQVLKFGEFTLKSGRKSPYF 59 (238)
T ss_dssp HTTSEEEEEEECSSSCEEEEE
T ss_pred HCCCeEecCEEecCCCcccEE
Confidence 445667777765555555433
No 373
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=34.81 E-value=36 Score=25.97 Aligned_cols=55 Identities=15% Similarity=0.064 Sum_probs=35.3
Q ss_pred eeEEE---EeCCCCCCCH-HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 149 VNLII---TDYTMPGMTG-YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 149 ~dlil---~D~~mp~~~G-~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
.++++ ....-|+.+| .+-++.+|+.. ....||+ +++.-..+....+.++|++.+.
T Consensus 131 ~~~vl~~a~~~~~~G~~g~~~~i~~lr~~~-~~~~~i~-v~GGI~~~~~~~~~~aGad~iv 189 (216)
T 1q6o_A 131 GQVVYHRSRDAQAAGVAWGEADITAIKRLS-DMGFKVT-VTGGLALEDLPLFKGIPIHVFI 189 (216)
T ss_dssp CEEEEECCHHHHHTTCCCCHHHHHHHHHHH-HTTCEEE-EESSCCGGGGGGGTTSCCSEEE
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHhc-CCCCcEE-EECCcChhhHHHHHHcCCCEEE
Confidence 45666 2223377777 77777887652 1244544 5665557778889999998765
No 374
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Probab=34.63 E-value=73 Score=24.97 Aligned_cols=86 Identities=9% Similarity=0.061 Sum_probs=48.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEc-CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVE-SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~-~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~ 169 (213)
.+.++||..-..-+-..+.+.|.+.|++|..+. +...+.+........ .......+-+|+ -+.+.. .+++.
T Consensus 26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv--~~~~~v~~~~~~ 98 (277)
T 4fc7_A 26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGA-----TGRRCLPLSMDV--RAPPAVMAAVDQ 98 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH-----HSSCEEEEECCT--TCHHHHHHHHHH
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-----cCCcEEEEEcCC--CCHHHHHHHHHH
Confidence 356899999998888889999988999887664 333222222110000 011334444555 333333 35666
Q ss_pred HHhcCCCCCCcEEEEec
Q 048660 170 IKESSVFREVPVVIMSS 186 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~ 186 (213)
+.+. ...+-+++..+
T Consensus 99 ~~~~--~g~id~lv~nA 113 (277)
T 4fc7_A 99 ALKE--FGRIDILINCA 113 (277)
T ss_dssp HHHH--HSCCCEEEECC
T ss_pred HHHH--cCCCCEEEECC
Confidence 6554 34556666554
No 375
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=34.61 E-value=40 Score=29.02 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
+++++++++.- ..++|||...+-.+.++..+++.+||+...
T Consensus 332 l~~I~~v~~~v-~~~iPIIg~GGI~s~eDa~e~l~aGAd~Vq 372 (415)
T 3i65_A 332 TKFICEMYNYT-NKQIPIIASGGIFSGLDALEKIEAGASVCQ 372 (415)
T ss_dssp HHHHHHHHHHT-TTCSCEEECSSCCSHHHHHHHHHHTEEEEE
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 36778887752 237999999999999999999999997653
No 376
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=34.56 E-value=1.6e+02 Score=22.69 Aligned_cols=37 Identities=5% Similarity=0.108 Sum_probs=21.8
Q ss_pred eeEEEEeCCCCCC-------C----HHHHHHHHHhcCCCCCCcEEEEecCC
Q 048660 149 VNLIITDYTMPGM-------T----GYELLKKIKESSVFREVPVVIMSSED 188 (213)
Q Consensus 149 ~dlil~D~~mp~~-------~----G~e~~~~ir~~~~~~~~pII~lt~~~ 188 (213)
.-+|++|...++. | |..+++.|.+.+ ...|.++++..
T Consensus 88 iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~G---~~~I~~i~~~~ 135 (287)
T 3bbl_A 88 FPFVAFGRSNPDWDFAWVDIDGTAGTRQAVEYLIGRG---HRRIAILAWPE 135 (287)
T ss_dssp CCEEEESCCSTTCCCCEEEECHHHHHHHHHHHHHHHT---CCCEEEEECCT
T ss_pred CCEEEECCcCCCCCCCEEEeccHHHHHHHHHHHHHCC---CCeEEEEeCCc
Confidence 3477777654431 2 566777777652 34677777653
No 377
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=34.44 E-value=1.9e+02 Score=23.90 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=40.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC--EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
..+|..||-++...+..+..++..|. ......|..+.+..+.. ....||+|++|.
T Consensus 231 ~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~---------~~~~fD~Ii~dp 287 (382)
T 1wxx_A 231 FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEK---------EGERFDLVVLDP 287 (382)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHH---------TTCCEEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHh---------cCCCeeEEEECC
Confidence 46899999999999999998887765 23456677776654421 234799999985
No 378
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=34.24 E-value=1.6e+02 Score=24.08 Aligned_cols=84 Identities=10% Similarity=0.002 Sum_probs=46.5
Q ss_pred cEEEEE-eCCHH---HHHHHHHHHhhcCCEEEEE-------cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC
Q 048660 94 LHVLAV-DDSYV---DRKLIERLLQISSCKVTAV-------ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT 162 (213)
Q Consensus 94 ~~ILvV-dD~~~---~~~~l~~~L~~~g~~v~~a-------~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~ 162 (213)
.+|.++ +|+.. ..+.++..+++.|..+... .+....+..++ ...+|+|++....+ .+
T Consensus 165 ~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i~-----------~~~~d~v~~~~~~~-~~ 232 (419)
T 3h5l_A 165 NKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKLR-----------ADPPAVIVVTHFYP-QD 232 (419)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHHH-----------HSCCSEEEECCCCH-HH
T ss_pred CEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHHH-----------hcCCCEEEEccccC-ch
Confidence 355555 44442 4445666677788877542 35556666663 34689999863222 13
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCCHH
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDVLT 191 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~~~ 191 (213)
...+++.+++.+ . ..+++...+....+
T Consensus 233 ~~~~~~~~~~~g-~-~~~~~~~~~~~~~~ 259 (419)
T 3h5l_A 233 QALFMNQFMTDP-T-NSLVYLQYGASLAA 259 (419)
T ss_dssp HHHHHHHHTTSC-C-SCEEEECSGGGSHH
T ss_pred HHHHHHHHHHcC-C-CceEEecCCCCcHH
Confidence 556777777653 2 44444333333333
No 379
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=34.17 E-value=88 Score=24.17 Aligned_cols=82 Identities=7% Similarity=0.051 Sum_probs=48.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~ir 171 (213)
+.++||..-..-+-..+...|.+.|++|..+....+.++.+.... ......+-+|+ -+.+.. .+++.+.
T Consensus 8 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dv--~~~~~v~~~~~~~~ 77 (255)
T 4eso_A 8 GKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF--------GPRVHALRSDI--ADLNEIAVLGAAAG 77 (255)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--------GGGEEEEECCT--TCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------CCcceEEEccC--CCHHHHHHHHHHHH
Confidence 457899999888889999999889999887654444444442210 11334444554 343333 3455555
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+. ...+-+++..+
T Consensus 78 ~~--~g~id~lv~nA 90 (255)
T 4eso_A 78 QT--LGAIDLLHINA 90 (255)
T ss_dssp HH--HSSEEEEEECC
T ss_pred HH--hCCCCEEEECC
Confidence 44 23455665544
No 380
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=34.15 E-value=1.3e+02 Score=24.18 Aligned_cols=17 Identities=6% Similarity=0.085 Sum_probs=9.2
Q ss_pred HHHHHHHhhcCCEEEEE
Q 048660 107 KLIERLLQISSCKVTAV 123 (213)
Q Consensus 107 ~~l~~~L~~~g~~v~~a 123 (213)
..+...+++.||.+..+
T Consensus 90 ~gi~~~a~~~g~~~~~~ 106 (355)
T 3e3m_A 90 QSLTDVLEQGGLQLLLG 106 (355)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHCCCEEEEE
Confidence 33444455667766554
No 381
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=34.03 E-value=95 Score=24.61 Aligned_cols=32 Identities=6% Similarity=-0.008 Sum_probs=27.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEE
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAV 123 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a 123 (213)
.+..+||..-..-+...+...|.+.|+.|..+
T Consensus 27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~ 58 (299)
T 3t7c_A 27 EGKVAFITGAARGQGRSHAITLAREGADIIAI 58 (299)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 45689999999889999999999999998875
No 382
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=34.00 E-value=96 Score=20.06 Aligned_cols=38 Identities=11% Similarity=0.100 Sum_probs=30.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRAL 130 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal 130 (213)
...|++..............|...||++.....|-.++
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~W 93 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMDEF 93 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHHHH
Confidence 34678887777767778888999999988888887765
No 383
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=33.65 E-value=1.3e+02 Score=22.24 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=30.1
Q ss_pred eeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 149 ~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
.++|-+.+..| ++.+.++.+|+.. +.-.+|.+....+.+....+.++|+|-.
T Consensus 36 ~~~iev~~~~~--~~~~~i~~ir~~~--~~~~~ig~~~v~~~~~~~~a~~~Gad~i 87 (205)
T 1wa3_A 36 VHLIEITFTVP--DADTVIKELSFLK--EKGAIIGAGTVTSVEQCRKAVESGAEFI 87 (205)
T ss_dssp CCEEEEETTST--THHHHHHHTHHHH--HTTCEEEEESCCSHHHHHHHHHHTCSEE
T ss_pred CCEEEEeCCCh--hHHHHHHHHHHHC--CCCcEEEecccCCHHHHHHHHHcCCCEE
Confidence 34444444433 4667788888752 2112344433345677888889998755
No 384
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=33.64 E-value=1.3e+02 Score=23.12 Aligned_cols=82 Identities=6% Similarity=-0.012 Sum_probs=48.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~ir 171 (213)
+.++||..-..-+-..+...|.+.|++|..+....+.++.+... .......+-+|+. +.+.. ++++.+.
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~D~~--~~~~v~~~~~~~~ 77 (259)
T 4e6p_A 8 GKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAE--------IGPAAYAVQMDVT--RQDSIDAAIAATV 77 (259)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH--------HCTTEEEEECCTT--CHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH--------hCCCceEEEeeCC--CHHHHHHHHHHHH
Confidence 45789999988888899998988999987665433333322211 0112344445553 33333 3566666
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+. ...+-+++..+
T Consensus 78 ~~--~g~id~lv~~A 90 (259)
T 4e6p_A 78 EH--AGGLDILVNNA 90 (259)
T ss_dssp HH--SSSCCEEEECC
T ss_pred HH--cCCCCEEEECC
Confidence 54 34556666654
No 385
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=33.51 E-value=1e+02 Score=24.14 Aligned_cols=81 Identities=9% Similarity=0.042 Sum_probs=48.3
Q ss_pred ccEEEEEeCC--HHHHHHHHHHHhhcCCEEEEEcCHH--HHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-HHHH
Q 048660 93 ELHVLAVDDS--YVDRKLIERLLQISSCKVTAVESGT--RALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-YELL 167 (213)
Q Consensus 93 ~~~ILvVdD~--~~~~~~l~~~L~~~g~~v~~a~~g~--eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-~e~~ 167 (213)
+.+|||..-. .-+-..+.+.|.+.|++|..+.... +.++.+.... .....+-+|+. +.+. .+++
T Consensus 26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~---------~~~~~~~~Dl~--~~~~v~~~~ 94 (280)
T 3nrc_A 26 GKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEF---------NPAAVLPCDVI--SDQEIKDLF 94 (280)
T ss_dssp TCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGG---------CCSEEEECCTT--CHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhc---------CCceEEEeecC--CHHHHHHHH
Confidence 4578888865 4477778888888899887764433 6666653321 12345555653 3333 3356
Q ss_pred HHHHhcCCCCCCcEEEEec
Q 048660 168 KKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 168 ~~ir~~~~~~~~pII~lt~ 186 (213)
+.+.+. ...+-+++..+
T Consensus 95 ~~~~~~--~g~id~li~nA 111 (280)
T 3nrc_A 95 VELGKV--WDGLDAIVHSI 111 (280)
T ss_dssp HHHHHH--CSSCCEEEECC
T ss_pred HHHHHH--cCCCCEEEECC
Confidence 666655 34566666654
No 386
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=33.38 E-value=1e+02 Score=23.91 Aligned_cols=37 Identities=8% Similarity=0.130 Sum_probs=22.3
Q ss_pred eeEEEEeCCCCCC-------C----HHHHHHHHHhcCCCCCCcEEEEecCC
Q 048660 149 VNLIITDYTMPGM-------T----GYELLKKIKESSVFREVPVVIMSSED 188 (213)
Q Consensus 149 ~dlil~D~~mp~~-------~----G~e~~~~ir~~~~~~~~pII~lt~~~ 188 (213)
.-+|++|...++. | |..+++.|.+. ....|.++++..
T Consensus 91 iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~---G~~~I~~i~~~~ 138 (290)
T 2rgy_A 91 PKMVFLNRAFDALPDASFCPDHRRGGELAAATLIEH---GHRKLAVISGPF 138 (290)
T ss_dssp SSEEEESSCCTTSGGGEECCCHHHHHHHHHHHHHHT---TCCSEEEEESCT
T ss_pred CCEEEEccccCCCCCCEEEeCcHHHHHHHHHHHHHC---CCceEEEEeCCC
Confidence 3477777665531 2 56667777764 245677777653
No 387
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=33.35 E-value=96 Score=20.37 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=31.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC-EEEEEcCHHHHHHHh
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSC-KVTAVESGTRALQYL 133 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~-~v~~a~~g~eal~~l 133 (213)
..|+++.+...........|...|| .|.....|-.++...
T Consensus 53 ~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~ 93 (106)
T 3hix_A 53 RDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAI 93 (106)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHHHHHT
T ss_pred CeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHHHHHC
Confidence 3588888777777778888999999 488888888877653
No 388
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=33.19 E-value=1.2e+02 Score=21.97 Aligned_cols=49 Identities=20% Similarity=0.200 Sum_probs=36.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
.+.+|-++....... .|...+..+..+.+..++++++ .....|+++.|.
T Consensus 115 ~g~~v~~~~g~~~~~-----~l~~~~~~~~~~~~~~~~~~~l-----------~~g~vDa~~~~~ 163 (233)
T 1ii5_A 115 KNKEVAVVRDTTAVD-----WANFYQADVRETNNLTAAITLL-----------QKKQVEAVMFDR 163 (233)
T ss_dssp TTCEEEEETTSHHHH-----HHHHTTCEEEEESSHHHHHHHH-----------HTTSCSEEEEEH
T ss_pred CCCeEEEECCccHHH-----HHHHcCCCeEEcCCHHHHHHHH-----------HcCCccEEEeCH
Confidence 356787777665432 3444488999999999999999 556789999874
No 389
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0
Probab=33.18 E-value=1e+02 Score=23.56 Aligned_cols=85 Identities=15% Similarity=0.162 Sum_probs=49.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEE-cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-HHHHHHHH
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAV-ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-YELLKKIK 171 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a-~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-~e~~~~ir 171 (213)
.++||..-..-+...+.+.|.+.|++|..+ .+..+..+.+...... .......+-+|+. +.+. .++++.+.
T Consensus 8 k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~--~~~~v~~~~~~~~ 80 (264)
T 3i4f_A 8 RHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKD-----VEERLQFVQADVT--KKEDLHKIVEEAM 80 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGG-----GGGGEEEEECCTT--SHHHHHHHHHHHH
T ss_pred CEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHh-----cCCceEEEEecCC--CHHHHHHHHHHHH
Confidence 478888888888888888888889998876 5544444443321110 1123445555553 3333 33566665
Q ss_pred hcCCCCCCcEEEEecC
Q 048660 172 ESSVFREVPVVIMSSE 187 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~ 187 (213)
+. ...+-+++..+.
T Consensus 81 ~~--~g~id~lv~~Ag 94 (264)
T 3i4f_A 81 SH--FGKIDFLINNAG 94 (264)
T ss_dssp HH--HSCCCEEECCCC
T ss_pred HH--hCCCCEEEECCc
Confidence 54 234556655443
No 390
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=33.10 E-value=1.1e+02 Score=24.58 Aligned_cols=56 Identities=13% Similarity=0.076 Sum_probs=34.0
Q ss_pred cee-EEEEeCCCCCCCH-----------HHHHHHHHhcCCCCCCcEEE-EecCCCHHH----HHHHHHcCCCeeee
Q 048660 148 KVN-LIITDYTMPGMTG-----------YELLKKIKESSVFREVPVVI-MSSEDVLTQ----IDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~d-lil~D~~mp~~~G-----------~e~~~~ir~~~~~~~~pII~-lt~~~~~~~----~~~~~~~G~~~~L~ 206 (213)
.+| .|-+.+..|...| .++++.+|+. .++|+++ ++...+.+. ...+.++|++.+..
T Consensus 119 g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~---~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d~i~v 191 (311)
T 1jub_A 119 DFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTF---FTKPLGVKLPPYFDLVHFDIMAEILNQFPLTYVNS 191 (311)
T ss_dssp CCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTT---CCSCEEEEECCCCSHHHHHHHHHHHTTSCCCEEEE
T ss_pred CCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHh---cCCCEEEEECCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence 467 7777776565421 4667777764 3678887 444434333 45666779987643
No 391
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Probab=33.03 E-value=1.4e+02 Score=22.87 Aligned_cols=51 Identities=4% Similarity=0.070 Sum_probs=35.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCE--EEE-EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCK--VTA-VESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~--v~~-a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
+|..||-++...+..+..+...|.. +.. ..|..+....+ ....||+|+++.
T Consensus 74 ~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~-----------~~~~fD~Ii~np 127 (259)
T 3lpm_A 74 KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLI-----------PKERADIVTCNP 127 (259)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTS-----------CTTCEEEEEECC
T ss_pred cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhh-----------ccCCccEEEECC
Confidence 8999999999999999988877752 443 34433322111 345799999963
No 392
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=32.84 E-value=1.5e+02 Score=22.09 Aligned_cols=69 Identities=4% Similarity=0.001 Sum_probs=45.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC--KVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKK 169 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~--~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ 169 (213)
..+|..+|-++...+..+..+...|. .+. ...+..+.+.... ....||+|++|...+ +-..+++.
T Consensus 78 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~----------~~~~fD~I~~~~~~~--~~~~~l~~ 145 (233)
T 2gpy_A 78 EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE----------LYPLFDVLFIDAAKG--QYRRFFDM 145 (233)
T ss_dssp TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT----------TSCCEEEEEEEGGGS--CHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc----------cCCCccEEEECCCHH--HHHHHHHH
Confidence 56899999999999999999887775 243 3345444333320 134799999997654 34456666
Q ss_pred HHhc
Q 048660 170 IKES 173 (213)
Q Consensus 170 ir~~ 173 (213)
+.+.
T Consensus 146 ~~~~ 149 (233)
T 2gpy_A 146 YSPM 149 (233)
T ss_dssp HGGG
T ss_pred HHHH
Confidence 6553
No 393
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=32.71 E-value=1e+02 Score=19.95 Aligned_cols=39 Identities=28% Similarity=0.270 Sum_probs=23.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC-CEEEEEcCHHHHHHHh
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISS-CKVTAVESGTRALQYL 133 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g-~~v~~a~~g~eal~~l 133 (213)
.+|+|+.- -.....+...|.+.| +.|..+....+.++.+
T Consensus 6 ~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~ 45 (118)
T 3ic5_A 6 WNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVL 45 (118)
T ss_dssp EEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHH
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHH
Confidence 46777777 555556666666667 6666655444444443
No 394
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=32.52 E-value=1.4e+02 Score=23.28 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=39.3
Q ss_pred eeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 149 VNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 149 ~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.++|-+|. .......++++++++. ...+|+++=-+-.+.++..+++ .|+|..+.
T Consensus 154 ~~~VYld~-sG~~~~~~~i~~i~~~--~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVV 207 (228)
T 3vzx_A 154 LPIFYLEY-SGVLGDIEAVKKTKAV--LETSTLFYGGGIKDAETAKQYA-EHADVIVV 207 (228)
T ss_dssp CSEEEEEC-TTSCCCHHHHHHHHHH--CSSSEEEEESSCCSHHHHHHHH-TTCSEEEE
T ss_pred CCEEEecC-CCCcCCHHHHHHHHHh--cCCCCEEEeCCCCCHHHHHHHH-hCCCEEEE
Confidence 56888887 3332358899999985 2368888666677788888777 79998765
No 395
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=32.42 E-value=83 Score=25.67 Aligned_cols=59 Identities=20% Similarity=0.322 Sum_probs=38.2
Q ss_pred ceeEEEEeCCCCCCCH----------HHHHHHHHhcCC------CCCCcEEE-EecCCCH----HHHHHHHHcCCCeeee
Q 048660 148 KVNLIITDYTMPGMTG----------YELLKKIKESSV------FREVPVVI-MSSEDVL----TQIDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~dlil~D~~mp~~~G----------~e~~~~ir~~~~------~~~~pII~-lt~~~~~----~~~~~~~~~G~~~~L~ 206 (213)
.+|.|-+.+..|..+| .++++.+|+.-. ..+.||++ ++...+. +....+.++|+|.+..
T Consensus 165 g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~v 244 (336)
T 1f76_A 165 YAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIA 244 (336)
T ss_dssp GCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred cCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEE
Confidence 4788888888787653 467777876410 12678877 4544332 2357778899987653
No 396
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=32.38 E-value=1.7e+02 Score=22.31 Aligned_cols=64 Identities=11% Similarity=0.212 Sum_probs=31.8
Q ss_pred HHHHHHHHhhcCCEEEEEcC---HHH---HHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-HHHHHHHHhcCCCCC
Q 048660 106 RKLIERLLQISSCKVTAVES---GTR---ALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-YELLKKIKESSVFRE 178 (213)
Q Consensus 106 ~~~l~~~L~~~g~~v~~a~~---g~e---al~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-~e~~~~ir~~~~~~~ 178 (213)
...+...+++.||.+..+.. ... .++.+ ....+|-|++.-. ..+. .+.++.+++. .
T Consensus 20 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l-----------~~~~vdgiIi~~~--~~~~~~~~~~~~~~~----~ 82 (271)
T 2dri_A 20 KDGAQKEADKLGYNLVVLDSQNNPAKELANVQDL-----------TVRGTKILLINPT--DSDAVGNAVKMANQA----N 82 (271)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHH-----------TTTTEEEEEECCS--STTTTHHHHHHHHHT----T
T ss_pred HHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHH-----------HHcCCCEEEEeCC--ChHHHHHHHHHHHHC----C
Confidence 34445556677887766532 222 23333 3346777666322 1122 2345555542 5
Q ss_pred CcEEEEec
Q 048660 179 VPVVIMSS 186 (213)
Q Consensus 179 ~pII~lt~ 186 (213)
+|+|++..
T Consensus 83 iPvV~i~~ 90 (271)
T 2dri_A 83 IPVITLDR 90 (271)
T ss_dssp CCEEEESS
T ss_pred CcEEEecC
Confidence 67776643
No 397
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=32.36 E-value=1.5e+02 Score=24.34 Aligned_cols=93 Identities=13% Similarity=0.079 Sum_probs=50.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
.+.+||||+.- -.+...+...|.+ .+.|..+.-..+.++.+.. ....+-+|+. |--.+.+.+
T Consensus 14 g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~------------~~~~~~~d~~----d~~~l~~~~ 75 (365)
T 3abi_A 14 GRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKE------------FATPLKVDAS----NFDKLVEVM 75 (365)
T ss_dssp --CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTT------------TSEEEECCTT----CHHHHHHHH
T ss_pred CCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhc------------cCCcEEEecC----CHHHHHHHH
Confidence 34578999988 6677778888875 5777776555555665531 1223344542 333344444
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
++ .++-|.++-..-.......|+++|.+ |+.
T Consensus 76 ~~----~DvVi~~~p~~~~~~v~~~~~~~g~~-yvD 106 (365)
T 3abi_A 76 KE----FELVIGALPGFLGFKSIKAAIKSKVD-MVD 106 (365)
T ss_dssp TT----CSEEEECCCGGGHHHHHHHHHHHTCE-EEE
T ss_pred hC----CCEEEEecCCcccchHHHHHHhcCcc-eEe
Confidence 43 23322222223345567788888873 544
No 398
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=32.22 E-value=1.6e+02 Score=22.63 Aligned_cols=10 Identities=10% Similarity=-0.031 Sum_probs=4.5
Q ss_pred HHHHHHHHHh
Q 048660 163 GYELLKKIKE 172 (213)
Q Consensus 163 G~e~~~~ir~ 172 (213)
|..+++.|.+
T Consensus 114 ~~~a~~~L~~ 123 (289)
T 3k9c_A 114 ITLAVDHLTE 123 (289)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 399
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}
Probab=32.12 E-value=95 Score=23.94 Aligned_cols=37 Identities=5% Similarity=0.037 Sum_probs=28.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTR 128 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~e 128 (213)
.+.++||..-..-+-..+...|.+.|++|..+....+
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 47 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSE 47 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3457888888888888888888888998876644333
No 400
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=31.99 E-value=2e+02 Score=23.28 Aligned_cols=82 Identities=10% Similarity=0.039 Sum_probs=51.2
Q ss_pred HHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEE-----eCCCC----CCCHHHHHHHHHhcCCCC
Q 048660 107 KLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIIT-----DYTMP----GMTGYELLKKIKESSVFR 177 (213)
Q Consensus 107 ~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~-----D~~mp----~~~G~e~~~~ir~~~~~~ 177 (213)
..+..+|+ |-.+.-+.+.+.|..+- ..+ .-.|.++ |..-- -+..++.++++|+. -
T Consensus 14 ~~~~~~~k--ggv~~d~~~~e~A~~ye-~~G----------A~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~---v 77 (297)
T 4adt_A 14 HGWCEMLK--GGVIMDVKNVEQAKIAE-KAG----------AIGVMILENIPSELRNTDGVARSVDPLKIEEIRKC---I 77 (297)
T ss_dssp HHHHHTTT--TCEEEEESSHHHHHHHH-HHT----------CSEEEECCCCC-----CCCCCCCCCHHHHHHHHTT---C
T ss_pred HhHHHHhc--CCcccCCCcHHHHHHHH-HcC----------CCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHh---c
Confidence 44444443 55666777777764443 221 1234454 54422 24579999999975 4
Q ss_pred CCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 178 EVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 178 ~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
.+|++.-.........+.+..+|+|..
T Consensus 78 ~iPvl~k~~i~~ide~qil~aaGAD~I 104 (297)
T 4adt_A 78 SINVLAKVRIGHFVEAQILEELKVDML 104 (297)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTTCSEE
T ss_pred CCCEEEeccCCcHHHHHHHHHcCCCEE
Confidence 799998766566777888889999876
No 401
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=31.99 E-value=1.5e+02 Score=21.62 Aligned_cols=95 Identities=14% Similarity=0.089 Sum_probs=55.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCC-EEE-EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSC-KVT-AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~-~v~-~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
....+|..+|-++...+..+..++..|. .+. ...+..+.+. ....||+|+++.... +-..+++
T Consensus 62 ~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-------------~~~~~D~i~~~~~~~--~~~~~l~ 126 (204)
T 3e05_A 62 MPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD-------------DLPDPDRVFIGGSGG--MLEEIID 126 (204)
T ss_dssp CTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT-------------TSCCCSEEEESCCTT--CHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh-------------cCCCCCEEEECCCCc--CHHHHHH
Confidence 3457899999999999999988877664 233 2333222111 124699999987655 4556777
Q ss_pred HHHhcCCCCCCcEEEEecC-CCH-HHHHHHHHcCC
Q 048660 169 KIKESSVFREVPVVIMSSE-DVL-TQIDSCLEEGA 201 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~-~~~-~~~~~~~~~G~ 201 (213)
.+.+.- .+.-.+++.+.. ... .......+.|.
T Consensus 127 ~~~~~L-kpgG~l~~~~~~~~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 127 AVDRRL-KSEGVIVLNAVTLDTLTKAVEFLEDHGY 160 (204)
T ss_dssp HHHHHC-CTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-CCCeEEEEEecccccHHHHHHHHHHCCC
Confidence 776542 233344443332 122 23334446665
No 402
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=31.98 E-value=1.8e+02 Score=22.58 Aligned_cols=16 Identities=6% Similarity=0.096 Sum_probs=8.2
Q ss_pred HHHHHhhcCCEEEEEc
Q 048660 109 IERLLQISSCKVTAVE 124 (213)
Q Consensus 109 l~~~L~~~g~~v~~a~ 124 (213)
+...+++.||.+..+.
T Consensus 49 i~~~a~~~g~~~~~~~ 64 (305)
T 3huu_A 49 INQACNVRGYSTRMTV 64 (305)
T ss_dssp HHHHHHHHTCEEEECC
T ss_pred HHHHHHHCCCEEEEEe
Confidence 3344455566665543
No 403
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=31.88 E-value=70 Score=23.52 Aligned_cols=31 Identities=13% Similarity=-0.006 Sum_probs=21.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEEcC
Q 048660 95 HVLAVDDSYVDRKLIERLLQISSCKVTAVES 125 (213)
Q Consensus 95 ~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~ 125 (213)
+|||..-.-.+...+...|.+.|++|..+..
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R 32 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVR 32 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEEc
Confidence 5777777666666777776667777765543
No 404
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=31.53 E-value=98 Score=24.46 Aligned_cols=54 Identities=19% Similarity=0.260 Sum_probs=34.4
Q ss_pred EEEEeCC-CCCC-CHHHHHHHHHhcCCCCCCcEEE-EecCCCHHHHHHHHHcCCCeeee
Q 048660 151 LIITDYT-MPGM-TGYELLKKIKESSVFREVPVVI-MSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 151 lil~D~~-mp~~-~G~e~~~~ir~~~~~~~~pII~-lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+=+||-. .|+. -|..+++.||+. .++.|+-+ +--.........+.++|++.+..
T Consensus 59 vDVmDg~FVpnit~G~~~v~~lr~~--~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itv 115 (246)
T 3inp_A 59 FDVMDNHYVPNLTFGPMVLKALRDY--GITAGMDVHLMVKPVDALIESFAKAGATSIVF 115 (246)
T ss_dssp EEEEBSSSSSCBCCCHHHHHHHHHH--TCCSCEEEEEECSSCHHHHHHHHHHTCSEEEE
T ss_pred EEecCCCcCcchhcCHHHHHHHHHh--CCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEE
Confidence 3355643 2554 388999999986 34566655 33334455778888999976543
No 405
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=31.52 E-value=1.7e+02 Score=22.11 Aligned_cols=42 Identities=26% Similarity=0.143 Sum_probs=32.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHh
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYL 133 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l 133 (213)
++.+|||..-..-+...+...|.+.|++|..+....+.++.+
T Consensus 13 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~ 54 (249)
T 3f9i_A 13 TGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSL 54 (249)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 456899999998899999999988999888765544444443
No 406
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=31.38 E-value=59 Score=25.04 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
++.++.++ . ..+|+++..+-.+.++..++++.|++..+.
T Consensus 63 ~~~i~~i~-~---~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~l 101 (241)
T 1qo2_A 63 LPVLEKLS-E---FAEHIQIGGGIRSLDYAEKLRKLGYRRQIV 101 (241)
T ss_dssp HHHHHHGG-G---GGGGEEEESSCCSHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHH-h---cCCcEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 66777776 4 368999999999999999999999988654
No 407
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2
Probab=31.33 E-value=1.7e+02 Score=22.52 Aligned_cols=86 Identities=14% Similarity=0.108 Sum_probs=48.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKI 170 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~i 170 (213)
.+.+|||..-.--+...+...|.+.|+.|..+....+.++.+...... .......+.+|+. +.+.+ ++++.+
T Consensus 30 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dl~--~~~~v~~~~~~~ 102 (272)
T 1yb1_A 30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG-----LGAKVHTFVVDCS--NREDIYSSAKKV 102 (272)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-----TTCCEEEEECCTT--CHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHh-----cCCeEEEEEeeCC--CHHHHHHHHHHH
Confidence 356899999998999999999988999987664333333322110000 1123445556653 32333 345555
Q ss_pred HhcCCCCCCcEEEEec
Q 048660 171 KESSVFREVPVVIMSS 186 (213)
Q Consensus 171 r~~~~~~~~pII~lt~ 186 (213)
.+. ...+-+++..+
T Consensus 103 ~~~--~g~iD~li~~A 116 (272)
T 1yb1_A 103 KAE--IGDVSILVNNA 116 (272)
T ss_dssp HHH--TCCCSEEEECC
T ss_pred HHH--CCCCcEEEECC
Confidence 554 33455666544
No 408
>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*
Probab=31.29 E-value=1.5e+02 Score=23.10 Aligned_cols=32 Identities=9% Similarity=0.005 Sum_probs=27.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEE
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAV 123 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a 123 (213)
.+..+||..-..-+-..+...|.+.|++|..+
T Consensus 10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~ 41 (286)
T 3uve_A 10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAV 41 (286)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE
Confidence 35679999999889999999999999998875
No 409
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=31.25 E-value=62 Score=24.25 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=21.2
Q ss_pred CHHHHHHHHHhcCCCCCCcEEEE--ecCCCHHHHHHHHHcCCCeeee
Q 048660 162 TGYELLKKIKESSVFREVPVVIM--SSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~l--t~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.|+++++.+|+. .++.|+.+- +.+........+.++|++.++.
T Consensus 39 ~g~~~i~~ir~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v 83 (211)
T 3f4w_A 39 EGVNAIKAIKEK--YPHKEVLADAKIMDGGHFESQLLFDAGADYVTV 83 (211)
T ss_dssp HTTHHHHHHHHH--CTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEE
T ss_pred ccHHHHHHHHHh--CCCCEEEEEEEeccchHHHHHHHHhcCCCEEEE
Confidence 355666666654 234555431 2222222356666666665544
No 410
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=31.22 E-value=1.5e+02 Score=22.68 Aligned_cols=89 Identities=10% Similarity=0.038 Sum_probs=50.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-HHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-YELLKKI 170 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-~e~~~~i 170 (213)
.+.++||..-.--+-..+...|.+.|++|..+....+.++.+...... ........+.+|+..-+.+. .++++.+
T Consensus 11 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 86 (252)
T 3f1l_A 11 NDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINE----ETGRQPQWFILDLLTCTSENCQQLAQRI 86 (252)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----HHSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----hcCCCceEEEEecccCCHHHHHHHHHHH
Confidence 356789999988888888888888999887664433333322110000 00113456667763333332 3356666
Q ss_pred HhcCCCCCCcEEEEec
Q 048660 171 KESSVFREVPVVIMSS 186 (213)
Q Consensus 171 r~~~~~~~~pII~lt~ 186 (213)
.+. ...+-+++..+
T Consensus 87 ~~~--~g~id~lv~nA 100 (252)
T 3f1l_A 87 AVN--YPRLDGVLHNA 100 (252)
T ss_dssp HHH--CSCCSEEEECC
T ss_pred HHh--CCCCCEEEECC
Confidence 655 34566666554
No 411
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A
Probab=31.18 E-value=95 Score=24.21 Aligned_cols=83 Identities=10% Similarity=0.088 Sum_probs=48.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKI 170 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~i 170 (213)
.+.++||..-..-+-..+...|.+.|+.|..+....+.++.+... .......+-+|+ -+.+.. .+++.+
T Consensus 26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~Dv--~d~~~v~~~~~~~ 95 (266)
T 3grp_A 26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAAD--------LGKDVFVFSANL--SDRKSIKQLAEVA 95 (266)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH--------HCSSEEEEECCT--TSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH--------hCCceEEEEeec--CCHHHHHHHHHHH
Confidence 356789999888889999999988999887765444444433211 111233444454 343333 355555
Q ss_pred HhcCCCCCCcEEEEec
Q 048660 171 KESSVFREVPVVIMSS 186 (213)
Q Consensus 171 r~~~~~~~~pII~lt~ 186 (213)
.+. ...+-+++..+
T Consensus 96 ~~~--~g~iD~lvnnA 109 (266)
T 3grp_A 96 ERE--MEGIDILVNNA 109 (266)
T ss_dssp HHH--HTSCCEEEECC
T ss_pred HHH--cCCCCEEEECC
Confidence 544 23455666554
No 412
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=30.98 E-value=1.5e+02 Score=21.32 Aligned_cols=95 Identities=16% Similarity=0.149 Sum_probs=53.7
Q ss_pred EEEEEeC--CHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC--CHHHHHHHH
Q 048660 95 HVLAVDD--SYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM--TGYELLKKI 170 (213)
Q Consensus 95 ~ILvVdD--~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~--~G~e~~~~i 170 (213)
+|.++.- .......+...|.+.|..+....+.......+. .-..=|++|+ +...+. +-.++++..
T Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~----------~~~~~d~vI~-iS~sG~t~~~~~~~~~a 119 (183)
T 2xhz_A 51 KVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLG----------MVTPQDVVIA-ISNSGESSEITALIPVL 119 (183)
T ss_dssp CEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTST----------TCCTTCEEEE-ECSSSCCHHHHHHHHHH
T ss_pred eEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhc----------cCCCCCEEEE-EeCCCCCHHHHHHHHHH
Confidence 6766653 455666677777788988877766544332221 0112244333 223343 345566666
Q ss_pred HhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeeeCCC
Q 048660 171 KESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIVKPV 209 (213)
Q Consensus 171 r~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~KP~ 209 (213)
++ ...++|++|+....... .-+|-.|.-|.
T Consensus 120 k~----~g~~vi~IT~~~~s~la-----~~ad~~l~~~~ 149 (183)
T 2xhz_A 120 KR----LHVPLICITGRPESSMA-----RAADVHLCVKV 149 (183)
T ss_dssp HT----TTCCEEEEESCTTSHHH-----HHSSEEEECCC
T ss_pred HH----CCCCEEEEECCCCChhH-----HhCCEEEEeCC
Confidence 64 36789999997654322 23566665554
No 413
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=30.92 E-value=91 Score=24.20 Aligned_cols=86 Identities=17% Similarity=0.073 Sum_probs=47.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcC-HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-HHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVES-GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-YELLKK 169 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~-g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-~e~~~~ 169 (213)
.+.+|||..-..-+...+...|.+.|++|..+.. ..+..+.+...... .......+-+|+ -+.+. .++++.
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~D~--~~~~~v~~~~~~ 100 (271)
T 4iin_A 28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEE-----KGYKAAVIKFDA--ASESDFIEAIQT 100 (271)
T ss_dssp SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-----TTCCEEEEECCT--TCHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh-----cCCceEEEECCC--CCHHHHHHHHHH
Confidence 3567899998888888888888889998876543 33333332211000 111333444444 44333 335666
Q ss_pred HHhcCCCCCCcEEEEec
Q 048660 170 IKESSVFREVPVVIMSS 186 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~ 186 (213)
+.+. ...+-+++..+
T Consensus 101 ~~~~--~g~id~li~nA 115 (271)
T 4iin_A 101 IVQS--DGGLSYLVNNA 115 (271)
T ss_dssp HHHH--HSSCCEEEECC
T ss_pred HHHh--cCCCCEEEECC
Confidence 6554 23455666544
No 414
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=30.88 E-value=1.2e+02 Score=23.45 Aligned_cols=86 Identities=17% Similarity=0.118 Sum_probs=47.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~ir 171 (213)
+.++||..-..-+-..+...|.+.|++|..+....+.++.+...... ........+-+|+ -+.+.. .+++.+.
T Consensus 10 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~~Dv--~~~~~v~~~~~~~~ 83 (262)
T 3pk0_A 10 GRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQ----LGSGKVIGVQTDV--SDRAQCDALAGRAV 83 (262)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT----TSSSCEEEEECCT--TSHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----hCCCcEEEEEcCC--CCHHHHHHHHHHHH
Confidence 45788888888888888888988999887664433333322111000 0112334444555 333333 3455555
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+. ...+-+++..+
T Consensus 84 ~~--~g~id~lvnnA 96 (262)
T 3pk0_A 84 EE--FGGIDVVCANA 96 (262)
T ss_dssp HH--HSCCSEEEECC
T ss_pred HH--hCCCCEEEECC
Confidence 54 23455666544
No 415
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=30.72 E-value=1.8e+02 Score=22.21 Aligned_cols=39 Identities=5% Similarity=0.096 Sum_probs=22.7
Q ss_pred ceeEEEEeCCCCCCC-----------HHHHHHHHHhcCCCCCCcEEEEecCCC
Q 048660 148 KVNLIITDYTMPGMT-----------GYELLKKIKESSVFREVPVVIMSSEDV 189 (213)
Q Consensus 148 ~~dlil~D~~mp~~~-----------G~e~~~~ir~~~~~~~~pII~lt~~~~ 189 (213)
..-+|++|-..++.+ |..+++.|.+.+ +..|.++++...
T Consensus 99 ~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~G---~~~i~~i~~~~~ 148 (298)
T 3tb6_A 99 GIPFAMINASYAELAAPSFTLDDVKGGMMAAEHLLSLG---HTHMMGIFKADD 148 (298)
T ss_dssp TCCEEEESSCCTTCSSCEEEECHHHHHHHHHHHHHHTT---CCSEEEEEESSS
T ss_pred CCCEEEEecCcCCCCCCEEEeCcHHHHHHHHHHHHHCC---CCcEEEEcCCCC
Confidence 345777777665432 566677776642 345666665544
No 416
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=30.72 E-value=46 Score=25.17 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=27.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcC
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVES 125 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~ 125 (213)
.+.+|||..-.-.+...+.+.|.+.|++|..+.-
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R 53 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVR 53 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Confidence 4568999999888888888888888998876643
No 417
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=30.65 E-value=1.6e+02 Score=22.89 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=25.2
Q ss_pred ceeEEEEeCCCCC--C------C----HHHHHHHHHhcCCCCCCcEEEEecCCCHH
Q 048660 148 KVNLIITDYTMPG--M------T----GYELLKKIKESSVFREVPVVIMSSEDVLT 191 (213)
Q Consensus 148 ~~dlil~D~~mp~--~------~----G~e~~~~ir~~~~~~~~pII~lt~~~~~~ 191 (213)
..-+|++|...++ . | |..+++.|.+. ..+-.|.++++.....
T Consensus 83 ~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~--~G~~~i~~i~g~~~~~ 136 (313)
T 3m9w_A 83 GIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDI--VPQGNYFLMGGSPVDN 136 (313)
T ss_dssp TCEEEEESSCCTTSCCSEEEEECHHHHHHHHHHHHHHH--CSSEEEEEEESCTTCH
T ss_pred CCeEEEECCcCCCCCceEEEecCHHHHHHHHHHHHHHh--CCCCcEEEEECCCCCc
Confidence 3446777765543 2 1 55666666633 4577777777776554
No 418
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=30.59 E-value=1.2e+02 Score=22.91 Aligned_cols=38 Identities=11% Similarity=0.167 Sum_probs=23.4
Q ss_pred eeEEEEeCCCCCC-------C----HHHHHHHHHhcCCCCCCcEEEEecCCC
Q 048660 149 VNLIITDYTMPGM-------T----GYELLKKIKESSVFREVPVVIMSSEDV 189 (213)
Q Consensus 149 ~dlil~D~~mp~~-------~----G~e~~~~ir~~~~~~~~pII~lt~~~~ 189 (213)
.-+|++|...++. | |..+++.|.+. .+..|.++++...
T Consensus 83 iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~---G~~~i~~i~~~~~ 131 (272)
T 3o74_A 83 LPVIAIDRRLDPAHFCSVISDDRDASRQLAASLLSS---APRSIALIGARPE 131 (272)
T ss_dssp CCEEEESSCCCTTTCEEEEECHHHHHHHHHHHHHTT---CCSEEEEEEECTT
T ss_pred CCEEEEccCCCccccCEEEEchHHHHHHHHHHHHHC---CCcEEEEEecCCC
Confidence 4477777766542 2 66677777764 3456777776544
No 419
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=30.38 E-value=1.7e+02 Score=22.35 Aligned_cols=15 Identities=13% Similarity=0.011 Sum_probs=7.2
Q ss_pred HHHHHhhcCCEEEEE
Q 048660 109 IERLLQISSCKVTAV 123 (213)
Q Consensus 109 l~~~L~~~g~~v~~a 123 (213)
+...+++.||.+..+
T Consensus 23 i~~~~~~~g~~~~~~ 37 (283)
T 2ioy_A 23 AEEKAKELGYKIIVE 37 (283)
T ss_dssp HHHHHHHHTCEEEEE
T ss_pred HHHHHHhcCcEEEEe
Confidence 333444556655443
No 420
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=30.25 E-value=1.9e+02 Score=24.01 Aligned_cols=54 Identities=19% Similarity=0.136 Sum_probs=39.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC---EE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSC---KV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~---~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
.+|.-||-++...+..+.-++..|. .+ ....|..+.+..+.. ....||+|++|-
T Consensus 236 ~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~---------~~~~fD~Ii~DP 293 (385)
T 2b78_A 236 MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARR---------HHLTYDIIIIDP 293 (385)
T ss_dssp SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHH---------TTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHH---------hCCCccEEEECC
Confidence 4899999999999999888887765 23 456777776654421 234799999985
No 421
>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}
Probab=30.17 E-value=1.2e+02 Score=23.53 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=48.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~ir 171 (213)
+.++||..-.--+-..+...|.+.|++|..+....+.++.+...... ........+-+|+ -+.+.. .+++.+.
T Consensus 20 ~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~~Dv--~~~~~v~~~~~~~~ 93 (266)
T 4egf_A 20 GKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGE----QFGTDVHTVAIDL--AEPDAPAELARRAA 93 (266)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----HHCCCEEEEECCT--TSTTHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH----hcCCcEEEEEecC--CCHHHHHHHHHHHH
Confidence 45788888888888889999988999887664333333222110000 0011344455555 444443 4666676
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+. ...+-+++..+
T Consensus 94 ~~--~g~id~lv~nA 106 (266)
T 4egf_A 94 EA--FGGLDVLVNNA 106 (266)
T ss_dssp HH--HTSCSEEEEEC
T ss_pred HH--cCCCCEEEECC
Confidence 54 33555666554
No 422
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*
Probab=30.16 E-value=1.7e+02 Score=22.79 Aligned_cols=87 Identities=11% Similarity=-0.006 Sum_probs=48.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKI 170 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~i 170 (213)
.+.+|||..-.--+...+...|.+.|++|..+....+.++.+...... ........+-+|+. +.+.+ .+++.+
T Consensus 25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~~Dl~--~~~~~~~~~~~~ 98 (302)
T 1w6u_A 25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISS----QTGNKVHAIQCDVR--DPDMVQNTVSEL 98 (302)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----HHSSCEEEEECCTT--CHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH----hcCCceEEEEeCCC--CHHHHHHHHHHH
Confidence 346899999998899999999988999988764333333322110000 00123445555653 33333 345555
Q ss_pred HhcCCCCCCcEEEEec
Q 048660 171 KESSVFREVPVVIMSS 186 (213)
Q Consensus 171 r~~~~~~~~pII~lt~ 186 (213)
.+. ...+-+++..+
T Consensus 99 ~~~--~g~id~li~~A 112 (302)
T 1w6u_A 99 IKV--AGHPNIVINNA 112 (302)
T ss_dssp HHH--TCSCSEEEECC
T ss_pred HHH--cCCCCEEEECC
Confidence 544 34555666554
No 423
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=30.13 E-value=1.5e+02 Score=22.18 Aligned_cols=51 Identities=10% Similarity=-0.108 Sum_probs=37.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEE-EcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEe
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTA-VESGTRALQYLGLDGEQSNVGFDALKVNLIITD 155 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~-a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D 155 (213)
.+|..+|-++...+..+......+..+.. ..+..+.+.-+ ....||+|++|
T Consensus 84 ~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-----------~~~~fD~V~~d 135 (236)
T 1zx0_A 84 DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL-----------PDGHFDGILYD 135 (236)
T ss_dssp EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS-----------CTTCEEEEEEC
T ss_pred CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhccc-----------CCCceEEEEEC
Confidence 38999999999999999988877776654 45554432222 34579999995
No 424
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=30.07 E-value=1.4e+02 Score=23.31 Aligned_cols=51 Identities=18% Similarity=0.353 Sum_probs=37.0
Q ss_pred ceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCC--HHH----HHHHHHcCCCeee
Q 048660 148 KVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDV--LTQ----IDSCLEEGAEEYI 205 (213)
Q Consensus 148 ~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~--~~~----~~~~~~~G~~~~L 205 (213)
..|+|.+.. + -|++.++++++. .++|+++..+-.. .++ ...++++|++++.
T Consensus 179 Gad~i~~~~--~--~~~~~l~~i~~~---~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~ 235 (273)
T 2qjg_A 179 GADIVKTSY--T--GDIDSFRDVVKG---CPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVA 235 (273)
T ss_dssp TCSEEEECC--C--SSHHHHHHHHHH---CSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEE
T ss_pred CCCEEEECC--C--CCHHHHHHHHHh---CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEE
Confidence 467777763 2 468889998875 2689999887763 444 6667789998875
No 425
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=30.00 E-value=1.4e+02 Score=24.09 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=15.2
Q ss_pred CHHHHHHHHHcCCCeeeeCCCCC
Q 048660 189 VLTQIDSCLEEGAEEYIVKPVKL 211 (213)
Q Consensus 189 ~~~~~~~~~~~G~~~~L~KP~~~ 211 (213)
..+....++++|..-++.||+..
T Consensus 78 h~~~~~~al~~gk~v~~EKP~~~ 100 (344)
T 3euw_A 78 HVDLITRAVERGIPALCEKPIDL 100 (344)
T ss_dssp HHHHHHHHHHTTCCEEECSCSCS
T ss_pred hHHHHHHHHHcCCcEEEECCCCC
Confidence 34456667777777777777653
No 426
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=29.91 E-value=1.1e+02 Score=23.56 Aligned_cols=39 Identities=0% Similarity=-0.045 Sum_probs=23.8
Q ss_pred ceeEEEEeCCCCCC-------C----HHHHHHHHHhcCCCCCCcEEEEecCCC
Q 048660 148 KVNLIITDYTMPGM-------T----GYELLKKIKESSVFREVPVVIMSSEDV 189 (213)
Q Consensus 148 ~~dlil~D~~mp~~-------~----G~e~~~~ir~~~~~~~~pII~lt~~~~ 189 (213)
..-+|++|...+.. | |..+++.|.+. ....|.++++...
T Consensus 87 ~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~---G~~~i~~i~~~~~ 136 (291)
T 3egc_A 87 TFPIVAVNRELRIPGCGAVLSENVRGARTAVEYLIAR---GHTRIGAIVGSAG 136 (291)
T ss_dssp TSCEEEESSCCCCTTCEEEEECHHHHHHHHHHHHHHT---TCCSEEEECSCTT
T ss_pred CCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHHHc---CCCEEEEEeCCCC
Confidence 45577777766531 2 55667777664 3456777777653
No 427
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=29.71 E-value=2.7e+02 Score=23.94 Aligned_cols=90 Identities=13% Similarity=0.081 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhhc-CCEE--EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC-----------CCCHHHHHHH
Q 048660 104 VDRKLIERLLQIS-SCKV--TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP-----------GMTGYELLKK 169 (213)
Q Consensus 104 ~~~~~l~~~L~~~-g~~v--~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp-----------~~~G~e~~~~ 169 (213)
...+.++.+-+.. +..+ ..+.+.++|....+ ...|.|.+...-. +....+++..
T Consensus 264 ~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~------------~G~d~I~v~~~~G~~~~~~~~~~~g~p~~~~l~~ 331 (494)
T 1vrd_A 264 RVIETLEMIKADYPDLPVVAGNVATPEGTEALIK------------AGADAVKVGVGPGSICTTRVVAGVGVPQLTAVME 331 (494)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHH------------TTCSEEEECSSCSTTCHHHHHHCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHH------------cCCCEEEEcCCCCccccccccCCCCccHHHHHHH
Confidence 3445555555544 3433 34566666655442 2367777633210 1234555555
Q ss_pred HHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 170 IKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 170 ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
+++.....++|||+-.+-.+..+..+++.+||+...
T Consensus 332 v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~ 367 (494)
T 1vrd_A 332 CSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVM 367 (494)
T ss_dssp HHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 554321247999999898899999999999998764
No 428
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=29.70 E-value=1.3e+02 Score=22.65 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=30.3
Q ss_pred CccEEEEEeCCHHHH---HHHHHHHhhcCCE-EE--EEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 92 KELHVLAVDDSYVDR---KLIERLLQISSCK-VT--AVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~---~~l~~~L~~~g~~-v~--~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
.+.+||||||--... ..+.+.|++.|.. |. +.-...++.+.+. ... +++-++.
T Consensus 119 ~gk~VllVDDvi~TG~Tl~~a~~~L~~~ga~~V~v~~~v~~~~~~~~l~-----------~~~-~~v~~~~ 177 (208)
T 1wd5_A 119 KGRDVVLVDDGVATGASMEAALSVVFQEGPRRVVVAVPVASPEAVERLK-----------ARA-EVVALSV 177 (208)
T ss_dssp TTSEEEEECSCBSSCHHHHHHHHHHHTTCCSEEEEEEEEBCHHHHHHHH-----------TTS-EEEEEEC
T ss_pred CCCEEEEECCCccHHHHHHHHHHHHHHcCCCEEEEEEEEcCHHHHHHhc-----------ccC-cEEEEec
Confidence 467999999964433 3344456666652 32 2223346666662 223 7777765
No 429
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=29.64 E-value=1.1e+02 Score=22.70 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=34.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEE-cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAV-ESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a-~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
..+|..+|=++...+..+..+...|..+... .|.. .+.. +....||+|+++.
T Consensus 79 ~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~-~~~~-----------~~~~~fD~I~~np 131 (230)
T 3evz_A 79 NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG-IIKG-----------VVEGTFDVIFSAP 131 (230)
T ss_dssp CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSC-SSTT-----------TCCSCEEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCch-hhhh-----------cccCceeEEEECC
Confidence 4689999999999999988888777533322 2211 0111 1335799999873
No 430
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}
Probab=29.59 E-value=1.8e+02 Score=22.60 Aligned_cols=71 Identities=7% Similarity=-0.002 Sum_probs=42.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHH
Q 048660 91 SKELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKI 170 (213)
Q Consensus 91 ~~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~i 170 (213)
...-+|.-||=++...+.+....++.+-......+....... ......+|+|++|+..|+ +...+++.+
T Consensus 100 G~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~----------~~~~~~vDvVf~d~~~~~-~~~~~l~~~ 168 (233)
T 4df3_A 100 GPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKY----------RHLVEGVDGLYADVAQPE-QAAIVVRNA 168 (233)
T ss_dssp CTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGG----------TTTCCCEEEEEECCCCTT-HHHHHHHHH
T ss_pred CCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCcccc----------ccccceEEEEEEeccCCh-hHHHHHHHH
Confidence 455689999999888877777776655333333332111110 113356899999998886 444556665
Q ss_pred Hh
Q 048660 171 KE 172 (213)
Q Consensus 171 r~ 172 (213)
+.
T Consensus 169 ~r 170 (233)
T 4df3_A 169 RF 170 (233)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 431
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=29.54 E-value=2e+02 Score=22.42 Aligned_cols=80 Identities=10% Similarity=0.022 Sum_probs=47.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-HHHHHHHHh
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-YELLKKIKE 172 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-~e~~~~ir~ 172 (213)
.+|||-.-..-+-..+...|.+.|++|..+.-.++.++.+... ......+-+|+ -+.+. -.+++.+.+
T Consensus 3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~---------~~~~~~~~~Dv--~~~~~v~~~v~~~~~ 71 (247)
T 3ged_A 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE---------RPNLFYFHGDV--ADPLTLKKFVEYAME 71 (247)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT---------CTTEEEEECCT--TSHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---------cCCEEEEEecC--CCHHHHHHHHHHHHH
Confidence 3677778888888888999999999988765545555544321 11223334444 33333 335555555
Q ss_pred cCCCCCCcEEEEec
Q 048660 173 SSVFREVPVVIMSS 186 (213)
Q Consensus 173 ~~~~~~~pII~lt~ 186 (213)
. ...+-+++-.+
T Consensus 72 ~--~g~iDiLVNNA 83 (247)
T 3ged_A 72 K--LQRIDVLVNNA 83 (247)
T ss_dssp H--HSCCCEEEECC
T ss_pred H--cCCCCEEEECC
Confidence 4 34566666544
No 432
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=29.49 E-value=1.5e+02 Score=22.39 Aligned_cols=81 Identities=14% Similarity=-0.034 Sum_probs=47.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHHHh
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKIKE 172 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~ir~ 172 (213)
.++||..-..-+...+...|.+.|++|..+....+.++.+.... ......+-+|+. +.+.. ++++.+.+
T Consensus 4 k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~--~~~~v~~~~~~~~~ 73 (235)
T 3l6e_A 4 GHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL--------GNAVIGIVADLA--HHEDVDVAFAAAVE 73 (235)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--------GGGEEEEECCTT--SHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--------cCCceEEECCCC--CHHHHHHHHHHHHH
Confidence 47889998888888898888889998876654344444332110 112444555553 33333 35555555
Q ss_pred cCCCCCCcEEEEec
Q 048660 173 SSVFREVPVVIMSS 186 (213)
Q Consensus 173 ~~~~~~~pII~lt~ 186 (213)
. ...+-+++..+
T Consensus 74 ~--~g~id~lvnnA 85 (235)
T 3l6e_A 74 W--GGLPELVLHCA 85 (235)
T ss_dssp H--HCSCSEEEEEC
T ss_pred h--cCCCcEEEECC
Confidence 4 23455665544
No 433
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=29.44 E-value=1.6e+02 Score=25.40 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=31.6
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHhhcCCEEEEEcCH-------HHHHHHhhhcCCCCCCCCCCCceeEEEEeCC
Q 048660 92 KELHVLAVDDSYV---DRKLIERLLQISSCKVTAVESG-------TRALQYLGLDGEQSNVGFDALKVNLIITDYT 157 (213)
Q Consensus 92 ~~~~ILvVdD~~~---~~~~l~~~L~~~g~~v~~a~~g-------~eal~~l~~~~~~~~~~~~~~~~dlil~D~~ 157 (213)
.+.+|++|+-|.. ..+.+..+-...|..+.....+ .++++.+ ....+|+||+|..
T Consensus 127 ~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a-----------~~~~~DvVIIDTa 191 (443)
T 3dm5_A 127 RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF-----------KSKGVDIIIVDTA 191 (443)
T ss_dssp TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH-----------HHTTCSEEEEECC
T ss_pred CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH-----------HhCCCCEEEEECC
Confidence 3568888886642 3344444445566666544322 2344444 2235899999974
No 434
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=29.38 E-value=1.4e+02 Score=24.46 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=37.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCE---E-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCK---V-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~---v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
.+|..||-++...+.++..++..|.. + ....|..+.+..+.. ....||+|++|.
T Consensus 176 a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~---------~~~~fD~Ii~dP 233 (332)
T 2igt_A 176 AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREER---------RGSTYDIILTDP 233 (332)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHH---------HTCCBSEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHh---------cCCCceEEEECC
Confidence 38999999999999998888766642 4 345666665543311 134799999985
No 435
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Probab=29.21 E-value=1.3e+02 Score=23.68 Aligned_cols=39 Identities=15% Similarity=0.047 Sum_probs=29.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQ 131 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~ 131 (213)
+.++||..-..-+-..+...|.+.|++|..+....+.++
T Consensus 8 gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~ 46 (280)
T 3tox_A 8 GKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALA 46 (280)
T ss_dssp TCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 457888888888888888888889999887654444443
No 436
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=29.17 E-value=1.9e+02 Score=22.13 Aligned_cols=38 Identities=8% Similarity=0.144 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
-++++.+++. .+++.+.|-+ +.+...++++.|++++++
T Consensus 197 ~~~v~~~~~~----G~~v~~wTvn-~~~~~~~l~~~GvdgI~T 234 (247)
T 2otd_A 197 KARVMQLKDA----GLRILVYTVN-KPQHAAELLRWGVDCICT 234 (247)
T ss_dssp HHHHHHHHHT----TCEEEEECCC-CHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHC----CCEEEEEccC-CHHHHHHHHHcCCCEEEe
Confidence 3566666653 6789989865 477888999999999875
No 437
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=29.03 E-value=2.5e+02 Score=23.27 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=40.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC---EE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC---KV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~---~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
..+|.-||-++...+..+..++..|. .+ ....|..+.+..+.. ....||+|++|.
T Consensus 243 ~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~---------~~~~fD~Ii~dp 301 (396)
T 3c0k_A 243 CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD---------RGEKFDVIVMDP 301 (396)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHH---------TTCCEEEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHh---------cCCCCCEEEECC
Confidence 35899999999999999998887776 34 355677766654421 134799999995
No 438
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*
Probab=28.92 E-value=1.2e+02 Score=21.55 Aligned_cols=53 Identities=13% Similarity=0.009 Sum_probs=35.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC-EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC-KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~-~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
..+|.-+|-++...+..+..++..|. .+....+..+.+... ....||+|++++
T Consensus 44 ~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~-----------~~~~fD~v~~~~ 97 (185)
T 3mti_A 44 SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHY-----------VREPIRAAIFNL 97 (185)
T ss_dssp SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGT-----------CCSCEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhh-----------ccCCcCEEEEeC
Confidence 57899999999999999998887764 344333322211111 234799999984
No 439
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=28.90 E-value=2.2e+02 Score=22.64 Aligned_cols=78 Identities=13% Similarity=0.079 Sum_probs=49.2
Q ss_pred HHHHHHHhhcCC---EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH----HHHhcCCCCCC
Q 048660 107 KLIERLLQISSC---KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK----KIKESSVFREV 179 (213)
Q Consensus 107 ~~l~~~L~~~g~---~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~----~ir~~~~~~~~ 179 (213)
..++.+-+..+. ....+.+.+++.+.++. ..|.|.+|-. + .+.++ .++.. .+++
T Consensus 170 ~ai~~~r~~~~~~~~i~vev~tlee~~~A~~a------------GaD~I~ld~~----~-~~~l~~~v~~l~~~--~~~~ 230 (273)
T 2b7n_A 170 SFLTHARKNLPFTAKIEIECESFEEAKNAMNA------------GADIVMCDNL----S-VLETKEIAAYRDAH--YPFV 230 (273)
T ss_dssp HHHHHHGGGSCTTCCEEEEESSHHHHHHHHHH------------TCSEEEEETC----C-HHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc------------CCCEEEECCC----C-HHHHHHHHHHhhcc--CCCc
Confidence 445554444553 34567888888877632 3689999852 2 33333 33332 4567
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCee
Q 048660 180 PVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 180 pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
+|. .++.-+.+....+.++|+|.+
T Consensus 231 ~i~-AsGGI~~~ni~~~~~aGaD~i 254 (273)
T 2b7n_A 231 LLE-ASGNISLESINAYAKSGVDAI 254 (273)
T ss_dssp EEE-EESSCCTTTHHHHHTTTCSEE
T ss_pred EEE-EECCCCHHHHHHHHHcCCcEE
Confidence 765 555567888999999999765
No 440
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=28.84 E-value=1.5e+02 Score=23.24 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=39.0
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 150 NLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 150 dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+|-++. .......++++++++. ...+|+++=-+-.+.++..++++ |++..+.
T Consensus 157 ~~VYl~s-~G~~~~~~~i~~i~~~--~~~~Pv~vGgGI~t~e~a~~~~~-gAd~VIV 209 (240)
T 1viz_A 157 PIFYLEY-SGVLGDIEAVKKTKAV--LETSTLFYGGGIKDAETAKQYAE-HADVIVV 209 (240)
T ss_dssp SEEEEEC-TTSCCCHHHHHHHHHT--CSSSEEEEESSCCSHHHHHHHHT-TCSEEEE
T ss_pred CEEEEeC-CCccChHHHHHHHHHh--cCCCCEEEEeccCCHHHHHHHHh-CCCEEEE
Confidence 4666666 4445568899999985 23788886667778888888888 9998764
No 441
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=28.81 E-value=47 Score=26.20 Aligned_cols=52 Identities=6% Similarity=0.009 Sum_probs=33.0
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 94 LHVLAVDDSYV--------DRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 94 ~~ILvVdD~~~--------~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
.+|+|+.+... ....+...|++.||.+..+.........+ ....+|+|+.-+
T Consensus 3 ~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~-----------~~~~~d~v~~~~ 62 (306)
T 1iow_A 3 DKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL-----------KSMGFQKVFIAL 62 (306)
T ss_dssp CEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGT-----------TTTTEEEEEECC
T ss_pred cEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHh-----------hccCCCEEEEcC
Confidence 57888876431 33567777888999998886542211111 335789887654
No 442
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=28.80 E-value=2.3e+02 Score=22.91 Aligned_cols=91 Identities=12% Similarity=0.152 Sum_probs=57.1
Q ss_pred EEEEEeCCHHH----HHHHHHHHhhcCC--EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHH
Q 048660 95 HVLAVDDSYVD----RKLIERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLK 168 (213)
Q Consensus 95 ~ILvVdD~~~~----~~~l~~~L~~~g~--~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~ 168 (213)
.+++.|++-.. ...++.+-+..+. ....+.+.+++.+.++. ..|.|.+|- ++- +.++
T Consensus 181 ~vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev~tlee~~eA~~a------------GaD~I~ld~----~~~-e~l~ 243 (296)
T 1qap_A 181 AFLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALKA------------GADIIMLDN----FNT-DQMR 243 (296)
T ss_dssp CEEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT------------TCSEEEESS----CCH-HHHH
T ss_pred EEEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc------------CCCEEEECC----CCH-HHHH
Confidence 36666655443 4455555554554 45577888888877631 478999985 343 3344
Q ss_pred HHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCee
Q 048660 169 KIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEY 204 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~ 204 (213)
.+++.- ..+++|. .++.-+.+......+.|+|.+
T Consensus 244 ~~v~~~-~~~~~I~-ASGGIt~~~i~~~a~~GvD~i 277 (296)
T 1qap_A 244 EAVKRV-NGQARLE-VSGNVTAETLREFAETGVDFI 277 (296)
T ss_dssp HHHHTT-CTTCCEE-ECCCSCHHHHHHHHHTTCSEE
T ss_pred HHHHHh-CCCCeEE-EECCCCHHHHHHHHHcCCCEE
Confidence 444331 2356554 666678999999999999654
No 443
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=28.77 E-value=1.4e+02 Score=23.39 Aligned_cols=83 Identities=10% Similarity=0.071 Sum_probs=48.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKI 170 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~i 170 (213)
.+.++||..-..-+-..+...|.+.|++|..+....+.++.+... .......+-+|+ -+.+.. .+++.+
T Consensus 26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~Dv--~d~~~v~~~~~~~ 95 (277)
T 4dqx_A 26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANE--------IGSKAFGVRVDV--SSAKDAESMVEKT 95 (277)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH--------HCTTEEEEECCT--TCHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH--------hCCceEEEEecC--CCHHHHHHHHHHH
Confidence 356789999998999999999988999988765444444433211 011233444454 333332 345555
Q ss_pred HhcCCCCCCcEEEEec
Q 048660 171 KESSVFREVPVVIMSS 186 (213)
Q Consensus 171 r~~~~~~~~pII~lt~ 186 (213)
.+. ...+-+++..+
T Consensus 96 ~~~--~g~iD~lv~nA 109 (277)
T 4dqx_A 96 TAK--WGRVDVLVNNA 109 (277)
T ss_dssp HHH--HSCCCEEEECC
T ss_pred HHH--cCCCCEEEECC
Confidence 544 23455666544
No 444
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=28.66 E-value=1.8e+02 Score=21.48 Aligned_cols=93 Identities=10% Similarity=0.017 Sum_probs=57.1
Q ss_pred hhhcccCCCcchhhhhhhhcCCccEEEEEeCCHHHHHHHHHHHhhcCC--EE-EEEcCHHHHHHHhhhcCCCCCCCCCCC
Q 048660 71 KFKETNRGFPFWAMATVAECSKELHVLAVDDSYVDRKLIERLLQISSC--KV-TAVESGTRALQYLGLDGEQSNVGFDAL 147 (213)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~ILvVdD~~~~~~~l~~~L~~~g~--~v-~~a~~g~eal~~l~~~~~~~~~~~~~~ 147 (213)
..-+.+-|.......-........+|..+|-++......+..+...|. .+ ....+..+.+..+... ...
T Consensus 61 ~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--------~~~ 132 (223)
T 3duw_A 61 NILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENE--------KYE 132 (223)
T ss_dssp EEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHT--------TCC
T ss_pred EEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhc--------CCC
Confidence 344455554443333322222256999999999999999999987775 24 4556777766554221 114
Q ss_pred ceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 148 KVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 148 ~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
.||+|++|...+ .-..+++.+.+.
T Consensus 133 ~fD~v~~d~~~~--~~~~~l~~~~~~ 156 (223)
T 3duw_A 133 PFDFIFIDADKQ--NNPAYFEWALKL 156 (223)
T ss_dssp CCSEEEECSCGG--GHHHHHHHHHHT
T ss_pred CcCEEEEcCCcH--HHHHHHHHHHHh
Confidence 699999997533 234566666553
No 445
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=28.54 E-value=1.7e+02 Score=22.27 Aligned_cols=33 Identities=15% Similarity=0.004 Sum_probs=27.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcC
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVES 125 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~ 125 (213)
+.++||..-.--+-..+...|.+.|++|..+..
T Consensus 7 ~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r 39 (247)
T 2jah_A 7 GKVALITGASSGIGEATARALAAEGAAVAIAAR 39 (247)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 457899999888888898888889998876543
No 446
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=28.47 E-value=1.8e+02 Score=23.42 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=12.0
Q ss_pred HHHHHHHHcCCCeeeeCCCC
Q 048660 191 TQIDSCLEEGAEEYIVKPVK 210 (213)
Q Consensus 191 ~~~~~~~~~G~~~~L~KP~~ 210 (213)
+....++++|..-++.||+.
T Consensus 86 ~~~~~al~~G~~v~~eKp~~ 105 (346)
T 3cea_A 86 EMTIYAMNAGLNVFCEKPLG 105 (346)
T ss_dssp HHHHHHHHTTCEEEECSCCC
T ss_pred HHHHHHHHCCCEEEEcCCCC
Confidence 44556666666556666654
No 447
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=28.11 E-value=1.4e+02 Score=23.17 Aligned_cols=32 Identities=9% Similarity=0.037 Sum_probs=27.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEc
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVE 124 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~ 124 (213)
+.+|||..-..-+-..+...|.+.|++|..+.
T Consensus 10 gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~ 41 (287)
T 3pxx_A 10 DKVVLVTGGARGQGRSHAVKLAEEGADIILFD 41 (287)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCeEEEEc
Confidence 45799999998888899999988999988753
No 448
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=28.08 E-value=88 Score=29.99 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
+++++++++. .+++|||+..+-.+.++..+++.+|++.+.
T Consensus 775 ~~~v~~v~~~--~~~ipvi~~GGI~s~~da~~~l~~Ga~~v~ 814 (1025)
T 1gte_A 775 LRAVTTIARA--LPGFPILATGGIDSAESGLQFLHSGASVLQ 814 (1025)
T ss_dssp HHHHHHHHHH--STTCCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHH--cCCCCEEEecCcCCHHHHHHHHHcCCCEEE
Confidence 4678888875 357999999999999999999999999864
No 449
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=27.99 E-value=12 Score=29.25 Aligned_cols=39 Identities=10% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
+++++++++. .++|+|+..+-.+.++..++++.|+++.+
T Consensus 189 ~~~~~~i~~~---~~iPvia~GGI~~~~d~~~~~~~Gad~v~ 227 (247)
T 3tdn_A 189 TEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLRGADKVS 227 (247)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHcCCcHhh
Confidence 4677777764 47899998888888999999999998864
No 450
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=27.95 E-value=1.7e+02 Score=22.53 Aligned_cols=31 Identities=3% Similarity=-0.062 Sum_probs=26.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEE
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAV 123 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a 123 (213)
+.++||..-..-+-..+...|.+.|++|..+
T Consensus 8 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~ 38 (259)
T 3edm_A 8 NRTIVVAGAGRDIGRACAIRFAQEGANVVLT 38 (259)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 4578999988888888888898899998876
No 451
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Probab=27.91 E-value=2.1e+02 Score=22.17 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=27.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEc
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVE 124 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~ 124 (213)
+.+|||..-.--+...+...|.+.|++|....
T Consensus 44 ~k~vlITGasggIG~~la~~L~~~G~~V~~~~ 75 (285)
T 2c07_A 44 NKVALVTGAGRGIGREIAKMLAKSVSHVICIS 75 (285)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCEEEEEc
Confidence 45799999998898899999988899988765
No 452
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=27.78 E-value=1.6e+02 Score=22.59 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=26.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVE 124 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~ 124 (213)
++|||..-.-.+...+...|.+.|++|....
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~ 36 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFD 36 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEEC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEec
Confidence 4899999999999999999988899988764
No 453
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=27.74 E-value=1.5e+02 Score=24.83 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=36.9
Q ss_pred ceeEEEEeCCCCCC-CHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 148 KVNLIITDYTMPGM-TGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 148 ~~dlil~D~~mp~~-~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
.+|.|.++...... .-.+.++.+|+. .+.+||++-. -.+.+....+.++|+|.+..
T Consensus 165 G~d~i~i~~~~g~~~~~~e~i~~ir~~--~~~~pviv~~-v~~~~~a~~a~~~Gad~I~v 221 (404)
T 1eep_A 165 HVDILVIDSAHGHSTRIIELIKKIKTK--YPNLDLIAGN-IVTKEAALDLISVGADCLKV 221 (404)
T ss_dssp TCSEEEECCSCCSSHHHHHHHHHHHHH--CTTCEEEEEE-ECSHHHHHHHHTTTCSEEEE
T ss_pred CCCEEEEeCCCCChHHHHHHHHHHHHH--CCCCeEEEcC-CCcHHHHHHHHhcCCCEEEE
Confidence 46777776433221 246678888876 3478888622 33477888999999987655
No 454
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2
Probab=27.70 E-value=2e+02 Score=21.94 Aligned_cols=33 Identities=6% Similarity=-0.133 Sum_probs=27.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcC
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVES 125 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~ 125 (213)
+.++||..-.--+-..+...|.+.|++|..+..
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r 39 (262)
T 1zem_A 7 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDM 39 (262)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 457899999888888899999889998876543
No 455
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}
Probab=27.68 E-value=75 Score=24.98 Aligned_cols=82 Identities=12% Similarity=0.050 Sum_probs=48.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHH----HHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-HHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRAL----QYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-YEL 166 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal----~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-~e~ 166 (213)
.+.++||..-..-+...+...|.+.|++|..+....+.+ +.+... ......+-+|+ -+.+. .++
T Consensus 31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---------~~~~~~~~~Dl--~d~~~v~~~ 99 (276)
T 3r1i_A 31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV---------GGKALPIRCDV--TQPDQVRGM 99 (276)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT---------TCCCEEEECCT--TCHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---------CCeEEEEEcCC--CCHHHHHHH
Confidence 356899999998899999999988999987764333322 223211 11333444555 33333 335
Q ss_pred HHHHHhcCCCCCCcEEEEec
Q 048660 167 LKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 167 ~~~ir~~~~~~~~pII~lt~ 186 (213)
++.+.+. ...+-+++..+
T Consensus 100 ~~~~~~~--~g~iD~lvnnA 117 (276)
T 3r1i_A 100 LDQMTGE--LGGIDIAVCNA 117 (276)
T ss_dssp HHHHHHH--HSCCSEEEECC
T ss_pred HHHHHHH--cCCCCEEEECC
Confidence 6666554 23455666544
No 456
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=27.50 E-value=97 Score=25.77 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHH----HHHHHHcCC--Ceeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQ----IDSCLEEGA--EEYIV 206 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~----~~~~~~~G~--~~~L~ 206 (213)
-++++.+++.-....+|+|++++..+.+. ...++++|+ .+++.
T Consensus 231 ~ea~~~f~~~~~a~~~P~v~lsgG~~~~~fl~~v~~A~~aGa~f~Gv~~ 279 (332)
T 3iv3_A 231 EEAAQAFREQEASTDLPYIYLSAGVSAELFQETLVFAHKAGAKFNGVLC 279 (332)
T ss_dssp HHHHHHHHHHHHTCSSCEEEECTTCCHHHHHHHHHHHHHHTCCCCEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCCcceEEe
Confidence 46656565532256899999998876644 456778999 88864
No 457
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*
Probab=27.43 E-value=1.8e+02 Score=22.24 Aligned_cols=34 Identities=9% Similarity=0.006 Sum_probs=28.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESG 126 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g 126 (213)
+.+|||..-.--+-..+...|.+.|++|..+...
T Consensus 16 ~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~ 49 (278)
T 2bgk_A 16 DKVAIITGGAGGIGETTAKLFVRYGAKVVIADIA 49 (278)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4679999999899999988888899998876443
No 458
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=27.42 E-value=2.4e+02 Score=22.69 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=36.6
Q ss_pred CceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 147 LKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 147 ~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
..+|+|.+....| .++++.+++. .++++... .+.+....+.+.|+|.++.
T Consensus 95 ~g~d~V~~~~g~p----~~~~~~l~~~----gi~vi~~v--~t~~~a~~~~~~GaD~i~v 144 (328)
T 2gjl_A 95 AGIRVVETAGNDP----GEHIAEFRRH----GVKVIHKC--TAVRHALKAERLGVDAVSI 144 (328)
T ss_dssp TTCCEEEEEESCC----HHHHHHHHHT----TCEEEEEE--SSHHHHHHHHHTTCSEEEE
T ss_pred cCCCEEEEcCCCc----HHHHHHHHHc----CCCEEeeC--CCHHHHHHHHHcCCCEEEE
Confidence 3578888887665 5788888864 56776533 3466778899999998876
No 459
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=27.39 E-value=1.1e+02 Score=24.10 Aligned_cols=22 Identities=9% Similarity=-0.206 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhcCCEEEEEcCH
Q 048660 105 DRKLIERLLQISSCKVTAVESG 126 (213)
Q Consensus 105 ~~~~l~~~L~~~g~~v~~a~~g 126 (213)
....+...|.+.|++|..+...
T Consensus 35 ~~~~l~~~L~~~G~~v~v~~~~ 56 (342)
T 2iuy_A 35 VVANLMDGLLELGHEVFLLGAP 56 (342)
T ss_dssp HHHHHHHHHHHTTCEEEEESCT
T ss_pred HHHHHHHHHHHcCCeEEEEecC
Confidence 3445666777789998877643
No 460
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=27.37 E-value=82 Score=26.29 Aligned_cols=49 Identities=16% Similarity=0.200 Sum_probs=34.0
Q ss_pred CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEec
Q 048660 125 SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 125 ~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~ 186 (213)
|..||+..+....+ +.-|+|.+- |.+.=+++++.+|+. .+.+|+.++--
T Consensus 241 N~~EAlre~~~Di~--------EGAD~vMVK---Pal~YLDIi~~vk~~--~p~~P~aaYqV 289 (342)
T 1h7n_A 241 GRGLARRALERDMS--------EGADGIIVK---PSTFYLDIMRDASEI--CKDLPICAYHV 289 (342)
T ss_dssp CHHHHHHHHHHHHH--------TTCSEEEEE---SSGGGHHHHHHHHHH--TTTSCEEEEEC
T ss_pred CHHHHHHHHHhhHH--------hCCCeEEEe---cCccHHHHHHHHHHh--ccCCCeEEEEc
Confidence 56777776543322 234777776 666668889999987 57899999854
No 461
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=27.31 E-value=1.2e+02 Score=23.49 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=48.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEc-CHHHHHH-HhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVE-SGTRALQ-YLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLK 168 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~-~g~eal~-~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~ 168 (213)
.+..+||..-..-+...+.+.|.+.|+.|.... ...+.++ .+..... .......+-+|+. +.+.. .+++
T Consensus 24 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~--~~~~v~~~~~ 95 (269)
T 3gk3_A 24 AKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERD------AGRDFKAYAVDVA--DFESCERCAE 95 (269)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHT------TTCCCEEEECCTT--CHHHHHHHHH
T ss_pred cCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHh------cCCceEEEEecCC--CHHHHHHHHH
Confidence 345788888888888899999988999887664 3333322 2211100 1123445555553 43333 3566
Q ss_pred HHHhcCCCCCCcEEEEec
Q 048660 169 KIKESSVFREVPVVIMSS 186 (213)
Q Consensus 169 ~ir~~~~~~~~pII~lt~ 186 (213)
.+.+. ...+-+++..+
T Consensus 96 ~~~~~--~g~id~li~nA 111 (269)
T 3gk3_A 96 KVLAD--FGKVDVLINNA 111 (269)
T ss_dssp HHHHH--HSCCSEEEECC
T ss_pred HHHHH--cCCCCEEEECC
Confidence 66554 23455666654
No 462
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=27.30 E-value=1.7e+02 Score=24.56 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=39.1
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHhhcCCEEEEEcC---------HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC
Q 048660 94 LHVLAVDDSYVD-----RKLIERLLQISSCKVTAVES---------GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP 159 (213)
Q Consensus 94 ~~ILvVdD~~~~-----~~~l~~~L~~~g~~v~~a~~---------g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp 159 (213)
.|+|||-|.... .+.+...|++.|+.+..+.. ..++++.+ ....+|+|| ...
T Consensus 44 ~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~-----------~~~~~D~II---avG 109 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVA-----------KKEKVEAVL---GVG 109 (407)
T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHH-----------HHTTCSEEE---EEE
T ss_pred CeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHH-----------HhcCCCEEE---EeC
Confidence 478998874332 44566677777887765542 23344444 234568777 235
Q ss_pred CCCHHHHHHHHHh
Q 048660 160 GMTGYELLKKIKE 172 (213)
Q Consensus 160 ~~~G~e~~~~ir~ 172 (213)
+.+-.++++.+..
T Consensus 110 GGsviD~AK~iA~ 122 (407)
T 1vlj_A 110 GGSVVDSAKAVAA 122 (407)
T ss_dssp SHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHH
Confidence 6666777776654
No 463
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=27.30 E-value=73 Score=25.77 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=43.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhc
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKES 173 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~ 173 (213)
++|.|+-....-...+...|++.|+.+.......+.+ ..+|+|+. =+.|| .+++..|..
T Consensus 30 mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~----------------~~~DlvIv----lGGDG-T~L~aa~~~ 88 (278)
T 1z0s_A 30 MRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL----------------ENFDFIVS----VGGDG-TILRILQKL 88 (278)
T ss_dssp CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG----------------GGSSEEEE----EECHH-HHHHHHTTC
T ss_pred eEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccccc----------------CCCCEEEE----ECCCH-HHHHHHHHh
Confidence 5788874321116678888999999988765432211 14677775 24566 455666654
Q ss_pred CCCCCCcEEEEec
Q 048660 174 SVFREVPVVIMSS 186 (213)
Q Consensus 174 ~~~~~~pII~lt~ 186 (213)
. .. +||+.+..
T Consensus 89 ~-~~-~PilGIN~ 99 (278)
T 1z0s_A 89 K-RC-PPIFGINT 99 (278)
T ss_dssp S-SC-CCEEEEEC
T ss_pred C-CC-CcEEEECC
Confidence 2 22 89998864
No 464
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=27.22 E-value=1.7e+02 Score=22.04 Aligned_cols=32 Identities=6% Similarity=-0.047 Sum_probs=27.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEc
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVE 124 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~ 124 (213)
+.+|||..-.--+...+...|.+.|++|..+.
T Consensus 13 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~ 44 (260)
T 3awd_A 13 NRVAIVTGGAQNIGLACVTALAEAGARVIIAD 44 (260)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 46799999998888889888888899987664
No 465
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=27.22 E-value=3.1e+02 Score=23.80 Aligned_cols=100 Identities=13% Similarity=0.033 Sum_probs=56.7
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHhhc-C-C--EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCC-----
Q 048660 93 ELHVLAVDDS----YVDRKLIERLLQIS-S-C--KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMP----- 159 (213)
Q Consensus 93 ~~~ILvVdD~----~~~~~~l~~~L~~~-g-~--~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp----- 159 (213)
+.++++++-+ ....+.+..+-+.. + . -+..+.+.++|...... ..|.+.+... |
T Consensus 254 gv~~l~Vd~~~g~~~~~~~~i~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~a------------Gad~I~Vg~~-~g~~~~ 320 (503)
T 1me8_A 254 GADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADA------------GADFIKIGIG-GGSICI 320 (503)
T ss_dssp TCSEEEECCSCCCSHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHH------------TCSEEEECSS-CSTTCC
T ss_pred hccceEEecccCcccchhhHHHHHHHhCCCCceEeeccccCHHHHHHHHHh------------CCCeEEeccc-CCcCcc
Confidence 4567777533 22233333222222 2 2 33457777777776632 3466665331 2
Q ss_pred -------CCCHHHHHHHHHhcCC------CCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 160 -------GMTGYELLKKIKESSV------FREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 160 -------~~~G~e~~~~ir~~~~------~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
+...+.++..+.+... ...+|||+=.+-....+..+|+.+||+...
T Consensus 321 ~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~ 379 (503)
T 1me8_A 321 TREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIM 379 (503)
T ss_dssp STTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred cccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence 1234444445443210 115899888888899999999999999764
No 466
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=27.21 E-value=2.2e+02 Score=22.02 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 165 ELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 165 e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
++++.+++. .++|.+.|-+ +.+...++++.|+|++++
T Consensus 201 ~~v~~~~~~----G~~v~~WTvn-~~~~~~~l~~~GVdgIiT 237 (252)
T 3qvq_A 201 QQVSDIKAA----GYKVLAFTIN-DESLALKLYNQGLDAVFS 237 (252)
T ss_dssp HHHHHHHHT----TCEEEEECCC-CHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHC----CCEEEEEcCC-CHHHHHHHHHcCCCEEEe
Confidence 556666653 6789999875 477889999999999875
No 467
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=27.19 E-value=2.1e+02 Score=21.80 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 165 ELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 165 e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+..+.+|+. ..++||++-.+-...+....+.+.|+|++|.
T Consensus 159 ~~~~~ir~~--~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlV 198 (219)
T 2h6r_A 159 GTVRAVKEI--NKDVKVLCGAGISKGEDVKAALDLGAEGVLL 198 (219)
T ss_dssp HHHHHHHHH--CTTCEEEECSSCCSHHHHHHHHTTTCCCEEE
T ss_pred HHHHHHHhc--cCCCeEEEEeCcCcHHHHHHHhhCCCCEEEE
Confidence 455566654 2367887777777788888899999999875
No 468
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*
Probab=27.04 E-value=2.1e+02 Score=21.80 Aligned_cols=82 Identities=10% Similarity=-0.020 Sum_probs=46.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~ir 171 (213)
+.++||..-.--+-..+...|.+.|++|..+....+.++.+.... ......+-+|+. +.+.. .+++.+.
T Consensus 5 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~D~~--~~~~~~~~~~~~~ 74 (254)
T 1hdc_A 5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL--------GDAARYQHLDVT--IEEDWQRVVAYAR 74 (254)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT--------GGGEEEEECCTT--CHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------CCceeEEEecCC--CHHHHHHHHHHHH
Confidence 457899998888888888888889999876644334444332110 112344445553 33333 3455555
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+. ...+-+++..+
T Consensus 75 ~~--~g~iD~lv~nA 87 (254)
T 1hdc_A 75 EE--FGSVDGLVNNA 87 (254)
T ss_dssp HH--HSCCCEEEECC
T ss_pred HH--cCCCCEEEECC
Confidence 43 23455666544
No 469
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=27.01 E-value=2.2e+02 Score=22.13 Aligned_cols=86 Identities=7% Similarity=0.043 Sum_probs=48.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcC-HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-HHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVES-GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-YELLKKI 170 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~-g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-~e~~~~i 170 (213)
+.++||..-..-+-..+...|.+.|++|..+.. ..+.++.+...... ........+-+|+ -+.+. .++++.+
T Consensus 25 ~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~Dv--~d~~~v~~~~~~~ 98 (281)
T 3v2h_A 25 TKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAG----LSSGTVLHHPADM--TKPSEIADMMAMV 98 (281)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHT----TCSSCEEEECCCT--TCHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhh----ccCCcEEEEeCCC--CCHHHHHHHHHHH
Confidence 457899999988999999999899999887653 33333322111000 0112333344454 33333 3356666
Q ss_pred HhcCCCCCCcEEEEec
Q 048660 171 KESSVFREVPVVIMSS 186 (213)
Q Consensus 171 r~~~~~~~~pII~lt~ 186 (213)
.+. ...+-+++..+
T Consensus 99 ~~~--~g~iD~lv~nA 112 (281)
T 3v2h_A 99 ADR--FGGADILVNNA 112 (281)
T ss_dssp HHH--TSSCSEEEECC
T ss_pred HHH--CCCCCEEEECC
Confidence 654 34555666554
No 470
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=26.96 E-value=2e+02 Score=22.16 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhcCC-EEEEEcC---HHH---HHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCC-HHHHHHHHHhcCCC
Q 048660 105 DRKLIERLLQISSC-KVTAVES---GTR---ALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMT-GYELLKKIKESSVF 176 (213)
Q Consensus 105 ~~~~l~~~L~~~g~-~v~~a~~---g~e---al~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~-G~e~~~~ir~~~~~ 176 (213)
....+...+++.|| .+..... ... .++.+ ....+|-||+--. ..+ ..+.++.+++
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~vdgiii~~~--~~~~~~~~~~~~~~---- 82 (309)
T 2fvy_A 20 VRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL-----------LAKGVKALAINLV--DPAAAGTVIEKARG---- 82 (309)
T ss_dssp HHHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHH-----------HHTTCSEEEECCS--SGGGHHHHHHHHHT----
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHH-----------HHcCCCEEEEeCC--CcchhHHHHHHHHH----
Confidence 34455666777887 7766542 222 33333 2235777776321 112 2345666654
Q ss_pred CCCcEEEEecC
Q 048660 177 REVPVVIMSSE 187 (213)
Q Consensus 177 ~~~pII~lt~~ 187 (213)
..+|+|++...
T Consensus 83 ~~iPvV~~~~~ 93 (309)
T 2fvy_A 83 QNVPVVFFNKE 93 (309)
T ss_dssp TTCCEEEESSC
T ss_pred CCCcEEEecCC
Confidence 36788877553
No 471
>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A
Probab=26.72 E-value=1.3e+02 Score=22.76 Aligned_cols=84 Identities=10% Similarity=0.084 Sum_probs=46.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHH-HHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGY-ELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~-e~~~~ir 171 (213)
+.+|||..-.--+-..+.+.|.+.|++|..+....+.++.+..... .......+-+|+. +.+.+ ++++.+.
T Consensus 6 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~------~~~~~~~~~~D~~--~~~~~~~~~~~~~ 77 (251)
T 1zk4_A 6 GKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG------TPDQIQFFQHDSS--DEDGWTKLFDATE 77 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC------CTTTEEEEECCTT--CHHHHHHHHHHHH
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh------ccCceEEEECCCC--CHHHHHHHHHHHH
Confidence 4578888888888888888888889988765433333332211110 1123455555653 32222 3455554
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+. ...+-+++..+
T Consensus 78 ~~--~~~id~li~~A 90 (251)
T 1zk4_A 78 KA--FGPVSTLVNNA 90 (251)
T ss_dssp HH--HSSCCEEEECC
T ss_pred HH--hCCCCEEEECC
Confidence 43 23445555544
No 472
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2
Probab=26.65 E-value=1.5e+02 Score=23.01 Aligned_cols=41 Identities=15% Similarity=0.003 Sum_probs=30.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHh
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYL 133 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l 133 (213)
+.++||..-.--+-..+...|.+.|++|..+....+.++.+
T Consensus 9 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 49 (270)
T 1yde_A 9 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRAL 49 (270)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 45799999988888889998988999988765434444433
No 473
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=26.59 E-value=70 Score=25.08 Aligned_cols=41 Identities=24% Similarity=0.338 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCCCCCcEEEEecCCCHH---HHHHHHHcCCCeeeeC
Q 048660 163 GYELLKKIKESSVFREVPVVIMSSEDVLT---QIDSCLEEGAEEYIVK 207 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII~lt~~~~~~---~~~~~~~~G~~~~L~K 207 (213)
+++.++.+|+. .++|+++++.. +.. ....+.++|+++++.-
T Consensus 82 ~~~~i~~ir~~---~~~Pv~~m~~~-~~~~~~~~~~a~~aGadgv~v~ 125 (262)
T 1rd5_A 82 VLEMLREVTPE---LSCPVVLLSYY-KPIMFRSLAKMKEAGVHGLIVP 125 (262)
T ss_dssp HHHHHHHHGGG---CSSCEEEECCS-HHHHSCCTHHHHHTTCCEEECT
T ss_pred HHHHHHHHHhc---CCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEEc
Confidence 56778888874 46888887522 121 1234889999988764
No 474
>1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1
Probab=26.38 E-value=88 Score=22.70 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=17.6
Q ss_pred CccEEEEEeCCHHH---HHHHHHHHhhcCCEE
Q 048660 92 KELHVLAVDDSYVD---RKLIERLLQISSCKV 120 (213)
Q Consensus 92 ~~~~ILvVdD~~~~---~~~l~~~L~~~g~~v 120 (213)
.+.+||||||--.. ...+.+.|++.|...
T Consensus 119 ~gk~VllVDDvitTG~Tl~~~~~~L~~~Ga~~ 150 (175)
T 1vch_A 119 LNQRVVLVSDVVASGETMRAMEKMVLRAGGHV 150 (175)
T ss_dssp TTCEEEEEEEEESSSHHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEEeccccchHHHHHHHHHHHHcCCeE
Confidence 45689999985333 333444566667643
No 475
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=26.35 E-value=1e+02 Score=25.77 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=56.0
Q ss_pred HHHHHHHHhhcCC--EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC----CC-CCCCHHHHHHHHHhcCCCCC
Q 048660 106 RKLIERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY----TM-PGMTGYELLKKIKESSVFRE 178 (213)
Q Consensus 106 ~~~l~~~L~~~g~--~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~----~m-p~~~G~e~~~~ir~~~~~~~ 178 (213)
.+.++.+-+..+. .+..+.+.++|....+ ...|.|.+.- ++ -+...++++.++++.- ..+
T Consensus 218 ~~~i~~lr~~~~~PvivK~v~~~e~a~~a~~------------~Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v-~~~ 284 (368)
T 2nli_A 218 PRDIEEIAGHSGLPVFVKGIQHPEDADMAIK------------RGASGIWVSNHGARQLYEAPGSFDTLPAIAERV-NKR 284 (368)
T ss_dssp HHHHHHHHHHSSSCEEEEEECSHHHHHHHHH------------TTCSEEEECCGGGTSCSSCCCHHHHHHHHHHHH-TTS
T ss_pred HHHHHHHHHHcCCCEEEEcCCCHHHHHHHHH------------cCCCEEEEcCCCcCCCCCCCChHHHHHHHHHHh-CCC
Confidence 3445555444443 3334567777766552 1356666532 11 1234678888887642 236
Q ss_pred CcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 179 VPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 179 ~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
+|||+-.+-.+..+..+++..||+.+.
T Consensus 285 ipVia~GGI~~g~D~~kalalGAd~V~ 311 (368)
T 2nli_A 285 VPIVFDSGVRRGEHVAKALASGADVVA 311 (368)
T ss_dssp SCEEECSSCCSHHHHHHHHHTTCSEEE
T ss_pred CeEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 999999999999999999999999875
No 476
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Probab=26.28 E-value=2.1e+02 Score=21.50 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=46.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEcCH-HHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcC
Q 048660 96 VLAVDDSYVDRKLIERLLQISSCKVTAVESG-TRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESS 174 (213)
Q Consensus 96 ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g-~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~ 174 (213)
|.++|.++.....+. .|+.+....-. .+.++.. .-...|++++-..- +..-..++..+|+.
T Consensus 34 v~vid~~~~~~~~~~-----~~~~~i~gd~~~~~~l~~a-----------~i~~ad~vi~~~~~-d~~n~~~~~~a~~~- 95 (234)
T 2aef_A 34 FVLAEDENVRKKVLR-----SGANFVHGDPTRVSDLEKA-----------NVRGARAVIVDLES-DSETIHCILGIRKI- 95 (234)
T ss_dssp EEEESCGGGHHHHHH-----TTCEEEESCTTCHHHHHHT-----------TCTTCSEEEECCSC-HHHHHHHHHHHHHH-
T ss_pred EEEEECCHHHHHHHh-----cCCeEEEcCCCCHHHHHhc-----------CcchhcEEEEcCCC-cHHHHHHHHHHHHH-
Confidence 777777665433332 45555443211 2344333 12356778875421 11234455666665
Q ss_pred CCCCCcEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 175 VFREVPVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 175 ~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
.+.+.||+.+.+. .....+.+.|++..+
T Consensus 96 -~~~~~iia~~~~~--~~~~~l~~~G~~~vi 123 (234)
T 2aef_A 96 -DESVRIIAEAERY--ENIEQLRMAGADQVI 123 (234)
T ss_dssp -CSSSEEEEECSSG--GGHHHHHHHTCSEEE
T ss_pred -CCCCeEEEEECCH--hHHHHHHHCCCCEEE
Confidence 4566777766543 344556688998654
No 477
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*
Probab=26.20 E-value=1.4e+02 Score=22.80 Aligned_cols=82 Identities=12% Similarity=0.071 Sum_probs=47.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-HHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-YELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-~e~~~~ir 171 (213)
+.++||..-..-+-..+...|.+.|++|..+....+.++.+.... ......+-+|+ -+.+. -.+++.+.
T Consensus 6 gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dv--~~~~~v~~~~~~~~ 75 (247)
T 3rwb_A 6 GKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI--------GKKARAIAADI--SDPGSVKALFAEIQ 75 (247)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--------CTTEEECCCCT--TCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------CCceEEEEcCC--CCHHHHHHHHHHHH
Confidence 457889988888888888888889999887654444444332110 11233334444 33333 23566665
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+. ...+-+++..+
T Consensus 76 ~~--~g~id~lv~nA 88 (247)
T 3rwb_A 76 AL--TGGIDILVNNA 88 (247)
T ss_dssp HH--HSCCSEEEECC
T ss_pred HH--CCCCCEEEECC
Confidence 54 23455666544
No 478
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=26.18 E-value=1.1e+02 Score=26.88 Aligned_cols=65 Identities=15% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCC-----------------------------CCH--------------
Q 048660 127 TRALQYLGLDGEQSNVGFDALKVNLIITDYTMPG-----------------------------MTG-------------- 163 (213)
Q Consensus 127 ~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~-----------------------------~~G-------------- 163 (213)
.++++.+ ....++.|++++++|. ..|
T Consensus 263 ~~~~~ra-----------e~aG~~al~itvd~p~~g~R~~~~r~g~~~p~~~~~~~~g~~~~~~~g~~~~~~~~~d~~~~ 331 (511)
T 1kbi_A 263 DDLVKNV-----------EKLGVKALFVTVDAPSLGQREKDMKLKFSNTKAGPKAMKKTNVEESQGASRALSKFIDPSLT 331 (511)
T ss_dssp HHHHHHH-----------HHHTCSCEEEECSCSSCCCCHHHHHHHHTTCC-------CCCCSSCCCGGGGCBTTBCTTCC
T ss_pred HHHHHHH-----------HHcCCCEEEEeCCCCCccccHHHHhccCCCCcccccccccccccccccHHHHHhhccChHhH
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
++.++.||+. . .+||++= +....++...+.++|++.+..
T Consensus 332 ~~~i~~lr~~--~-~~PvivK-gv~~~e~A~~a~~aGad~I~v 370 (511)
T 1kbi_A 332 WKDIEELKKK--T-KLPIVIK-GVQRTEDVIKAAEIGVSGVVL 370 (511)
T ss_dssp HHHHHHHHHH--C-SSCEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHH--h-CCcEEEE-eCCCHHHHHHHHHcCCCEEEE
No 479
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=26.17 E-value=2.8e+02 Score=22.92 Aligned_cols=55 Identities=15% Similarity=0.178 Sum_probs=40.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCC--EE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSC--KV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~--~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
..+|.-||-++...+..+..++..|. .+ ....|..+.+..+.. ....||+|++|.
T Consensus 240 ~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~---------~~~~fD~Vi~dp 297 (396)
T 2as0_A 240 ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK---------KGEKFDIVVLDP 297 (396)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH---------TTCCEEEEEECC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHh---------hCCCCCEEEECC
Confidence 34899999999999999998887775 34 355677666654321 234799999985
No 480
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=26.11 E-value=2e+02 Score=22.08 Aligned_cols=67 Identities=13% Similarity=0.166 Sum_probs=35.0
Q ss_pred HHHHHHHHhhcCCEEEEEc--CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEE
Q 048660 106 RKLIERLLQISSCKVTAVE--SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVI 183 (213)
Q Consensus 106 ~~~l~~~L~~~g~~v~~a~--~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~ 183 (213)
...+...+++.||.+..+. +.....+.++.. ....+|-|++.-.-+. .....++.+++. .+|+|+
T Consensus 21 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l--------~~~~vdgiii~~~~~~-~~~~~~~~~~~~----~iPvV~ 87 (306)
T 8abp_A 21 WKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSL--------AASGAKGFVICTPDPK-LGSAIVAKARGY----DMKVIA 87 (306)
T ss_dssp HHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHH--------HHTTCCEEEEECSCGG-GHHHHHHHHHHT----TCEEEE
T ss_pred HHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHH--------HHcCCCEEEEeCCCch-hhHHHHHHHHHC----CCcEEE
Confidence 3445556677788776554 333333333211 2235777776532221 223345666543 678888
Q ss_pred Ee
Q 048660 184 MS 185 (213)
Q Consensus 184 lt 185 (213)
+.
T Consensus 88 ~~ 89 (306)
T 8abp_A 88 VD 89 (306)
T ss_dssp ES
T ss_pred eC
Confidence 76
No 481
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=26.03 E-value=2e+02 Score=22.78 Aligned_cols=84 Identities=10% Similarity=0.043 Sum_probs=49.0
Q ss_pred EEEEE-eCCHHHH---HHHHHHHhhcCCEEEEE-------cCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH
Q 048660 95 HVLAV-DDSYVDR---KLIERLLQISSCKVTAV-------ESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG 163 (213)
Q Consensus 95 ~ILvV-dD~~~~~---~~l~~~L~~~g~~v~~a-------~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G 163 (213)
+|.++ +|+..-+ +.++..|++.|..+... .+....++.+. ...+|.|++.... ...
T Consensus 141 ~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~-----------~~~~d~i~~~~~~--~~a 207 (358)
T 3hut_A 141 SVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIE-----------DEAPQAIYLAMAY--EDA 207 (358)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHH-----------HHCCSEEEEESCH--HHH
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHH-----------hcCCCEEEEccCc--hHH
Confidence 55554 4554433 34556677788866432 34556666663 2357888886421 245
Q ss_pred HHHHHHHHhcCCCCCCcEEEEecCCCHHHH
Q 048660 164 YELLKKIKESSVFREVPVVIMSSEDVLTQI 193 (213)
Q Consensus 164 ~e~~~~ir~~~~~~~~pII~lt~~~~~~~~ 193 (213)
..+++.+++.+ -.+|++...+.......
T Consensus 208 ~~~~~~~~~~g--~~~p~~~~~~~~~~~~~ 235 (358)
T 3hut_A 208 APFLRALRARG--SALPVYGSSALYSPKFI 235 (358)
T ss_dssp HHHHHHHHHTT--CCCCEEECGGGCSHHHH
T ss_pred HHHHHHHHHcC--CCCcEEecCcccCHHHH
Confidence 66788888763 36787766555554433
No 482
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=26.02 E-value=2.9e+02 Score=23.04 Aligned_cols=86 Identities=13% Similarity=0.087 Sum_probs=56.9
Q ss_pred HHHHHHHhhcCC--EEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCC----C-CCCCHHHHHHHHHhcCCCCCC
Q 048660 107 KLIERLLQISSC--KVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYT----M-PGMTGYELLKKIKESSVFREV 179 (213)
Q Consensus 107 ~~l~~~L~~~g~--~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~----m-p~~~G~e~~~~ir~~~~~~~~ 179 (213)
+.++.+-+..+. .+..+.+.++|....+ ...|.|++.-. + .+...++++.++++.- ..++
T Consensus 207 ~~i~~lr~~~~~PvivK~v~~~e~A~~a~~------------~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av-~~~i 273 (352)
T 3sgz_A 207 NDLSLLQSITRLPIILKGILTKEDAELAMK------------HNVQGIVVSNHGGRQLDEVSASIDALREVVAAV-KGKI 273 (352)
T ss_dssp HHHHHHHHHCCSCEEEEEECSHHHHHHHHH------------TTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHH-TTSS
T ss_pred HHHHHHHHhcCCCEEEEecCcHHHHHHHHH------------cCCCEEEEeCCCCCccCCCccHHHHHHHHHHHh-CCCC
Confidence 445555444443 3445677777776653 23566665321 1 1234678888887642 3479
Q ss_pred cEEEEecCCCHHHHHHHHHcCCCeee
Q 048660 180 PVVIMSSEDVLTQIDSCLEEGAEEYI 205 (213)
Q Consensus 180 pII~lt~~~~~~~~~~~~~~G~~~~L 205 (213)
|||+-.+-.+..+..+++.+||+.+.
T Consensus 274 pVia~GGI~~g~Dv~kaLalGA~aV~ 299 (352)
T 3sgz_A 274 EVYMDGGVRTGTDVLKALALGARCIF 299 (352)
T ss_dssp EEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred eEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999864
No 483
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=26.00 E-value=78 Score=23.57 Aligned_cols=43 Identities=16% Similarity=0.246 Sum_probs=24.2
Q ss_pred CHHHHHHHHHhcCCCCCCcEEE--EecCCCHHHHHHHHHcCCCeeee
Q 048660 162 TGYELLKKIKESSVFREVPVVI--MSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 162 ~G~e~~~~ir~~~~~~~~pII~--lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+|.++++.||+. .++.|+++ .+.+........+.++|++.+..
T Consensus 39 ~g~~~i~~l~~~--~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~v 83 (207)
T 3ajx_A 39 EGLSVITAVKKA--HPDKIVFADMKTMDAGELEADIAFKAGADLVTV 83 (207)
T ss_dssp HCTHHHHHHHHH--STTSEEEEEEEECSCHHHHHHHHHHTTCSEEEE
T ss_pred hCHHHHHHHHHh--CCCCeEEEEEEecCccHHHHHHHHhCCCCEEEE
Confidence 456677777765 33566664 33321223466777777776543
No 484
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=25.97 E-value=2.8e+02 Score=22.99 Aligned_cols=89 Identities=18% Similarity=0.050 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhhcCCEEEEEcC---HHHHHHHhhhcCCCCCCCCCCCceeEEEEe-------CCCCCCCHHHHHHHHH
Q 048660 102 SYVDRKLIERLLQISSCKVTAVES---GTRALQYLGLDGEQSNVGFDALKVNLIITD-------YTMPGMTGYELLKKIK 171 (213)
Q Consensus 102 ~~~~~~~l~~~L~~~g~~v~~a~~---g~eal~~l~~~~~~~~~~~~~~~~dlil~D-------~~mp~~~G~e~~~~ir 171 (213)
++.....+.+.++..|+.+...-. ..+..+.+ .....|.+.++ ...|.. .++.+++++
T Consensus 140 d~~~~~~~i~~~~~~g~~v~~~v~~~~~~e~a~~~-----------~~agad~i~i~~~~~~~~~~~~~~-~~~~i~~l~ 207 (393)
T 2qr6_A 140 DTELLSERIAQVRDSGEIVAVRVSPQNVREIAPIV-----------IKAGADLLVIQGTLISAEHVNTGG-EALNLKEFI 207 (393)
T ss_dssp CHHHHHHHHHHHHHTTSCCEEEECTTTHHHHHHHH-----------HHTTCSEEEEECSSCCSSCCCC------CHHHHH
T ss_pred CHHHHHHHHHHHhhcCCeEEEEeCCccHHHHHHHH-----------HHCCCCEEEEeCCccccccCCCcc-cHHHHHHHH
Q ss_pred hcCCCCCCcEEEEecCCCHHHHHHHHHcCCCeeee
Q 048660 172 ESSVFREVPVVIMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 172 ~~~~~~~~pII~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+. . .+||++ -+-.+.++...+.++|+|.+..
T Consensus 208 ~~--~-~~pvi~-ggi~t~e~a~~~~~~Gad~i~v 238 (393)
T 2qr6_A 208 GS--L-DVPVIA-GGVNDYTTALHMMRTGAVGIIV 238 (393)
T ss_dssp HH--C-SSCEEE-ECCCSHHHHHHHHTTTCSEEEE
T ss_pred Hh--c-CCCEEE-CCcCCHHHHHHHHHcCCCEEEE
No 485
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Probab=25.96 E-value=1.3e+02 Score=22.69 Aligned_cols=33 Identities=9% Similarity=-0.046 Sum_probs=26.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcC
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVES 125 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~ 125 (213)
+.+|||..-.--+...+...|.+.|++|.....
T Consensus 11 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r 43 (255)
T 1fmc_A 11 GKCAIITGAGAGIGKEIAITFATAGASVVVSDI 43 (255)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEcC
Confidence 457899988888888888888888998876643
No 486
>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}
Probab=25.89 E-value=1.2e+02 Score=23.63 Aligned_cols=86 Identities=8% Similarity=0.052 Sum_probs=48.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-HHHHHHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-YELLKKI 170 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-~e~~~~i 170 (213)
.+.++||..-..-+-..+...|.+.|++|..+....+.++.+...... .......+-+|+ -+.+. .++++.+
T Consensus 25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~Dv--~d~~~v~~~~~~~ 97 (271)
T 4ibo_A 25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRN-----VGHDAEAVAFDV--TSESEIIEAFARL 97 (271)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHH-----TTCCEEECCCCT--TCHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----cCCceEEEEcCC--CCHHHHHHHHHHH
Confidence 356788888888888888989988999988765433333322110000 111233333444 33333 3356666
Q ss_pred HhcCCCCCCcEEEEec
Q 048660 171 KESSVFREVPVVIMSS 186 (213)
Q Consensus 171 r~~~~~~~~pII~lt~ 186 (213)
.+. ...+-+++..+
T Consensus 98 ~~~--~g~iD~lv~nA 111 (271)
T 4ibo_A 98 DEQ--GIDVDILVNNA 111 (271)
T ss_dssp HHH--TCCCCEEEECC
T ss_pred HHH--CCCCCEEEECC
Confidence 654 34566666554
No 487
>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A
Probab=25.89 E-value=36 Score=27.65 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCCCCCcEE--EEecCCCHHHHHHHHHcCCCeeee
Q 048660 163 GYELLKKIKESSVFREVPVV--IMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII--~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
++++++.+++. ..+|++ +..+-.+.++..+++.+|+++++.
T Consensus 195 ~~~~i~~i~~~---~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~v 237 (305)
T 2nv1_A 195 PYELLLQIKKD---GKLPVVNFAAGGVATPADAALMMQLGADGVFV 237 (305)
T ss_dssp CHHHHHHHHHH---TSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEE
T ss_pred cHHHHHHHHHh---cCCCEEEEeccCCCCHHHHHHHHHcCCCEEEE
Confidence 46778888764 367887 556666888999999999998754
No 488
>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}
Probab=25.88 E-value=1.1e+02 Score=24.27 Aligned_cols=83 Identities=16% Similarity=0.112 Sum_probs=47.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHH----HHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-HHH
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTR----ALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-YEL 166 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~e----al~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-~e~ 166 (213)
.+.+|||..-..-+-..+...|.+.|++|..+....+ +.+.+... .......+-+|+ -+.+. .++
T Consensus 40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--------~~~~~~~~~~Dv--~d~~~v~~~ 109 (293)
T 3rih_A 40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGEL--------GAGNVIGVRLDV--SDPGSCADA 109 (293)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTS--------SSSCEEEEECCT--TCHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh--------CCCcEEEEEEeC--CCHHHHHHH
Confidence 3457888888888889999999889998876643322 23333211 002334444554 34333 335
Q ss_pred HHHHHhcCCCCCCcEEEEec
Q 048660 167 LKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 167 ~~~ir~~~~~~~~pII~lt~ 186 (213)
++.+.+. ...+-+++..+
T Consensus 110 ~~~~~~~--~g~iD~lvnnA 127 (293)
T 3rih_A 110 ARTVVDA--FGALDVVCANA 127 (293)
T ss_dssp HHHHHHH--HSCCCEEEECC
T ss_pred HHHHHHH--cCCCCEEEECC
Confidence 5666554 33455666544
No 489
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=25.87 E-value=1.2e+02 Score=24.77 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHcCCCeeeeCCCCC
Q 048660 188 DVLTQIDSCLEEGAEEYIVKPVKL 211 (213)
Q Consensus 188 ~~~~~~~~~~~~G~~~~L~KP~~~ 211 (213)
...+....++++|.+-|+-||+..
T Consensus 79 ~H~~~~~~al~aGkhV~~EKPla~ 102 (352)
T 3kux_A 79 THFPLAQSALAAGKHVVVDKPFTV 102 (352)
T ss_dssp THHHHHHHHHHTTCEEEECSSCCS
T ss_pred HHHHHHHHHHHCCCcEEEECCCcC
Confidence 345667888899988888899754
No 490
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=25.85 E-value=1.7e+02 Score=20.42 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=31.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCE-EEEEcCHHHHHHHh
Q 048660 94 LHVLAVDDSYVDRKLIERLLQISSCK-VTAVESGTRALQYL 133 (213)
Q Consensus 94 ~~ILvVdD~~~~~~~l~~~L~~~g~~-v~~a~~g~eal~~l 133 (213)
..|+++.+...........|...||. |.....|-.++...
T Consensus 57 ~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~ 97 (141)
T 3ilm_A 57 RDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKAI 97 (141)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHHHHHHT
T ss_pred CeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHHHHHHC
Confidence 46888888777777788889999995 88888888887653
No 491
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=25.73 E-value=2.3e+02 Score=21.78 Aligned_cols=31 Identities=6% Similarity=0.012 Sum_probs=26.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEE
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAV 123 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a 123 (213)
+.++||..-..-+-..+...|.+.|++|..+
T Consensus 11 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~ 41 (262)
T 3ksu_A 11 NKVIVIAGGIKNLGALTAKTFALESVNLVLH 41 (262)
T ss_dssp TCEEEEETCSSHHHHHHHHHHTTSSCEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 4578999999889999999999999998875
No 492
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=25.68 E-value=1.5e+02 Score=21.81 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=35.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
.+ +|-++..... ...|.+.+..+..+.+..++++++ ...+.|+++.|.
T Consensus 106 ~g-~igv~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~L-----------~~GrvDa~i~~~ 153 (232)
T 3i6v_A 106 SG-IVAAQTATIQ-----AGYIAESGATLVEFATPEETIAAV-----------RNGEADAVFADR 153 (232)
T ss_dssp TS-EEEEETTSHH-----HHHHHHSSSEEEEESSHHHHHHHH-----------HTTSSSEEEEEH
T ss_pred CC-CEEEecCchH-----HHHHHhcCCeEEEeCCHHHHHHHH-----------HcCCcCEEEECh
Confidence 35 7777766643 233444488999999999999999 556889999974
No 493
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E
Probab=25.61 E-value=1.2e+02 Score=23.10 Aligned_cols=82 Identities=18% Similarity=0.103 Sum_probs=48.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHhhcCCEEEEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCH-HHHHHHHH
Q 048660 93 ELHVLAVDDSYVDRKLIERLLQISSCKVTAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTG-YELLKKIK 171 (213)
Q Consensus 93 ~~~ILvVdD~~~~~~~l~~~L~~~g~~v~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G-~e~~~~ir 171 (213)
+.++||..-..-+-..+...|.+.|++|..+....+.++.+.... ......+-+|+. +.+. ..+++.+.
T Consensus 9 gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--------~~~~~~~~~Dv~--d~~~v~~~~~~~~ 78 (248)
T 3op4_A 9 GKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL--------GDNGKGMALNVT--NPESIEAVLKAIT 78 (248)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--------GGGEEEEECCTT--CHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--------cccceEEEEeCC--CHHHHHHHHHHHH
Confidence 457888888888888888889889999887654444444332111 112334445553 3333 33566665
Q ss_pred hcCCCCCCcEEEEec
Q 048660 172 ESSVFREVPVVIMSS 186 (213)
Q Consensus 172 ~~~~~~~~pII~lt~ 186 (213)
+. ...+-+++..+
T Consensus 79 ~~--~g~iD~lv~nA 91 (248)
T 3op4_A 79 DE--FGGVDILVNNA 91 (248)
T ss_dssp HH--HCCCSEEEECC
T ss_pred HH--cCCCCEEEECC
Confidence 54 23455666544
No 494
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=25.60 E-value=78 Score=26.29 Aligned_cols=49 Identities=16% Similarity=0.413 Sum_probs=34.0
Q ss_pred CHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCCCHHHHHHHHHhcCCCCCCcEEEEec
Q 048660 125 SGTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGMTGYELLKKIKESSVFREVPVVIMSS 186 (213)
Q Consensus 125 ~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~~G~e~~~~ir~~~~~~~~pII~lt~ 186 (213)
|..||+..+....+ +.-|+|.+- |++.=+++++.+|+. .+.+|+.++--
T Consensus 230 N~~EAlre~~~Di~--------EGAD~vMVK---Pal~YLDIi~~vk~~--~p~~P~aaYqV 278 (330)
T 1pv8_A 230 ARGLALRAVDRDVR--------EGADMLMVK---PGMPYLDIVREVKDK--HPDLPLAVYHV 278 (330)
T ss_dssp CHHHHHHHHHHHHH--------TTCSBEEEE---SCGGGHHHHHHHHHH--STTSCEEEEEC
T ss_pred CHHHHHHHHHhhHH--------hCCceEEEe---cCccHHHHHHHHHHh--cCCCCeEEEEc
Confidence 56777776653322 234677666 666668899999987 66899999854
No 495
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=25.59 E-value=1.5e+02 Score=20.71 Aligned_cols=41 Identities=7% Similarity=-0.088 Sum_probs=31.7
Q ss_pred ccEEEEEeCCH--HHHHHHHHHHhhcCCEEEEEcCHHHHHHHh
Q 048660 93 ELHVLAVDDSY--VDRKLIERLLQISSCKVTAVESGTRALQYL 133 (213)
Q Consensus 93 ~~~ILvVdD~~--~~~~~l~~~L~~~g~~v~~a~~g~eal~~l 133 (213)
...|++..+.. .........|+..||+|.....|-.++...
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~W~~~ 114 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEYWRKE 114 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHHHHHT
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHHHHHC
Confidence 34677887776 456677788999999998999998887653
No 496
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=25.54 E-value=1.3e+02 Score=23.13 Aligned_cols=84 Identities=15% Similarity=0.074 Sum_probs=44.1
Q ss_pred CccEEEEEeCC--H-HHHHHHHHHHhhcCCEEEE-E-cC---HHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCCCCC--
Q 048660 92 KELHVLAVDDS--Y-VDRKLIERLLQISSCKVTA-V-ES---GTRALQYLGLDGEQSNVGFDALKVNLIITDYTMPGM-- 161 (213)
Q Consensus 92 ~~~~ILvVdD~--~-~~~~~l~~~L~~~g~~v~~-a-~~---g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~mp~~-- 161 (213)
.+..+++.+.+ . .....+..++. .+++-.. . .+ ..+.++.+.. ...-+|++|...++.
T Consensus 34 ~g~~~~~~~~~~~~~~~~~~~~~l~~-~~vdgiIi~~~~~~~~~~~~~~~~~-----------~~iPvV~~~~~~~~~~~ 101 (291)
T 3l49_A 34 LGGTAIALDAGRNDQTQVSQIQTLIA-QKPDAIIEQLGNLDVLNPWLQKIND-----------AGIPLFTVDTATPHAIN 101 (291)
T ss_dssp TTCEEEEEECTTCHHHHHHHHHHHHH-HCCSEEEEESSCHHHHHHHHHHHHH-----------TTCCEEEESCCCTTCSE
T ss_pred cCCEEEEEcCCCCHHHHHHHHHHHHH-cCCCEEEEeCCChhhhHHHHHHHHH-----------CCCcEEEecCCCCCcCc
Confidence 35677777533 2 22444555554 3443322 2 23 2345555532 234478888766542
Q ss_pred --------CHHHHHHHHHhcCCCCCCcEEEEecCC
Q 048660 162 --------TGYELLKKIKESSVFREVPVVIMSSED 188 (213)
Q Consensus 162 --------~G~e~~~~ir~~~~~~~~pII~lt~~~ 188 (213)
.|..+++.+.+.. ..+..|.++++..
T Consensus 102 ~V~~D~~~~g~~~~~~l~~~~-~g~~~i~~i~~~~ 135 (291)
T 3l49_A 102 NTTSNNYSIGAELALQMVADL-GGKGNVLVFNGFY 135 (291)
T ss_dssp EEEECHHHHHHHHHHHHHHHH-TTCEEEEEECSCT
T ss_pred eEecChHHHHHHHHHHHHHHc-CCCceEEEEeCCC
Confidence 2667777777621 1356777787654
No 497
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=25.52 E-value=2.4e+02 Score=22.06 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=43.4
Q ss_pred CccEEEEEeCCHHHHHHHHHHHhhc--C----------CEE-EEEcCHHHHHHHhhhcCCCCCCCCCCCceeEEEEeCCC
Q 048660 92 KELHVLAVDDSYVDRKLIERLLQIS--S----------CKV-TAVESGTRALQYLGLDGEQSNVGFDALKVNLIITDYTM 158 (213)
Q Consensus 92 ~~~~ILvVdD~~~~~~~l~~~L~~~--g----------~~v-~~a~~g~eal~~l~~~~~~~~~~~~~~~~dlil~D~~m 158 (213)
...+|..||-++...+..+..+ .. + -++ ....|+.+.+.. ...||+|++|...
T Consensus 97 ~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-------------~~~fD~Ii~d~~~ 162 (281)
T 1mjf_A 97 DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-------------NRGFDVIIADSTD 162 (281)
T ss_dssp CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-------------CCCEEEEEEECCC
T ss_pred CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-------------cCCeeEEEECCCC
Confidence 3468999999999999888887 33 2 223 345666554432 1369999999865
Q ss_pred CCCC-----HHHHHHHHHhc
Q 048660 159 PGMT-----GYELLKKIKES 173 (213)
Q Consensus 159 p~~~-----G~e~~~~ir~~ 173 (213)
|... ..++++.+++.
T Consensus 163 ~~~~~~~l~~~~~l~~~~~~ 182 (281)
T 1mjf_A 163 PVGPAKVLFSEEFYRYVYDA 182 (281)
T ss_dssp CC-----TTSHHHHHHHHHH
T ss_pred CCCcchhhhHHHHHHHHHHh
Confidence 4321 24566666653
No 498
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=25.48 E-value=1.3e+02 Score=25.82 Aligned_cols=54 Identities=20% Similarity=0.113 Sum_probs=31.5
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHhhcCCEEEEEcC---H----HHHHHHhhhcCCCCCCCCCCCceeEEEEeC
Q 048660 92 KELHVLAVDDSY---VDRKLIERLLQISSCKVTAVES---G----TRALQYLGLDGEQSNVGFDALKVNLIITDY 156 (213)
Q Consensus 92 ~~~~ILvVdD~~---~~~~~l~~~L~~~g~~v~~a~~---g----~eal~~l~~~~~~~~~~~~~~~~dlil~D~ 156 (213)
.+.+|++++-|. .....+..+-...|..+..... . .++++.+ ....+|+||+|.
T Consensus 125 ~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~-----------~~~~~DvVIIDT 188 (425)
T 2ffh_A 125 KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA-----------RLEARDLILVDT 188 (425)
T ss_dssp TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH-----------HHTTCSEEEEEC
T ss_pred cCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH-----------HHCCCCEEEEcC
Confidence 356899998773 2333344444456777766533 2 2233333 124689999997
No 499
>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*
Probab=25.43 E-value=48 Score=26.60 Aligned_cols=41 Identities=20% Similarity=0.305 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCCCCCcEE--EEecCCCHHHHHHHHHcCCCeeee
Q 048660 163 GYELLKKIKESSVFREVPVV--IMSSEDVLTQIDSCLEEGAEEYIV 206 (213)
Q Consensus 163 G~e~~~~ir~~~~~~~~pII--~lt~~~~~~~~~~~~~~G~~~~L~ 206 (213)
+++.++.+++. .++|++ +..+-.+.++..+++++|+++++.
T Consensus 195 ~~~~i~~l~~~---~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvv 237 (297)
T 2zbt_A 195 PFELVKWVHDH---GRLPVVNFAAGGIATPADAALMMHLGMDGVFV 237 (297)
T ss_dssp CHHHHHHHHHH---SSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEE
T ss_pred hHHHHHHHHHh---cCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEE
Confidence 46778888875 256766 444455889999999999998764
No 500
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=25.43 E-value=2.1e+02 Score=21.59 Aligned_cols=37 Identities=8% Similarity=0.011 Sum_probs=21.8
Q ss_pred eeEEEEeCCCCCC-------C----HHHHHHHHHhcCCCCCCcEEEEecCC
Q 048660 149 VNLIITDYTMPGM-------T----GYELLKKIKESSVFREVPVVIMSSED 188 (213)
Q Consensus 149 ~dlil~D~~mp~~-------~----G~e~~~~ir~~~~~~~~pII~lt~~~ 188 (213)
.-+|++|-..+.. | |..+++.|.+. .+..|.++++..
T Consensus 83 iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~L~~~---G~~~i~~i~~~~ 130 (275)
T 3d8u_A 83 TPVLEIAELSSKASYLNIGVDHFEVGKACTRHLIEQ---GFKNVGFIGARG 130 (275)
T ss_dssp CCEEEESSSCSSSSSEEECBCHHHHHHHHHHHHHTT---TCCCEEEEECSC
T ss_pred CCEEEEeeccCCCCCCEEEEChHHHHHHHHHHHHHC---CCCeEEEEcCCC
Confidence 3477777654431 2 56667777764 244677777653
Done!