BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048662
         (214 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
 pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
          Length = 885

 Score =  167 bits (422), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 82/140 (58%), Positives = 100/140 (71%), Gaps = 4/140 (2%)

Query: 2   TFGISSLNKKNVDDGRKLASAVYLQVSSISQAHLFVTHARSWSYVKCPVLFLALAFCVAQ 61
           TFG+ S+     D+  +L  AVYLQVS ISQA +FVT +RSWS+V+ P   L +AF +AQ
Sbjct: 740 TFGVRSIR----DNNHELMGAVYLQVSIISQALIFVTRSRSWSFVERPGALLMIAFLIAQ 795

Query: 62  LTATLIAVYATWSFATIEGIGWGWAGVIWLYNIIFYILLDFIKFFIRYVLSRNFWDLVIE 121
           L ATLIAVYA W FA I GIGWGWAGVIWLY+I+ Y  LD  KF IRY+LS   W  + E
Sbjct: 796 LIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPLDVFKFAIRYILSGKAWLNLFE 855

Query: 122 QRTAFTTKRDFGKEEHERRW 141
            +TAFT K+D+GKEE E +W
Sbjct: 856 NKTAFTMKKDYGKEEREAQW 875


>pdb|2O98|P Chain P, Structure Of The 14-3-3  H+-Atpase Plant Complex
 pdb|2O98|Q Chain Q, Structure Of The 14-3-3  H+-Atpase Plant Complex
          Length = 52

 Score = 45.4 bits (106), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 32/52 (61%)

Query: 163 SSYGELSRMXXXXXXXXXXXXXXXXHTLKGQVESLIRLKGLDIDSILQSYSV 214
           +++ EL+++                HTLKG VES+++LKGLDI++I QSY +
Sbjct: 1   TNFNELNQLAEEAKRRAEIARQRELHTLKGHVESVVKLKGLDIETIQQSYDI 52


>pdb|3M50|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
           EPIBESTAT
 pdb|3M51|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
           PYRROLIDO
 pdb|4DX0|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY A
           PYRAZOLE Derivative
          Length = 31

 Score = 42.4 bits (98), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/27 (62%), Positives = 24/27 (88%)

Query: 188 HTLKGQVESLIRLKGLDIDSILQSYSV 214
           HTLKG VE++++LKGLDI++I QSY +
Sbjct: 5   HTLKGHVEAVVKLKGLDIETIQQSYDI 31


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.137    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,361,109
Number of Sequences: 62578
Number of extensions: 180509
Number of successful extensions: 488
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 8
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)