Query 048662
Match_columns 214
No_of_seqs 205 out of 479
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 11:47:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048662.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048662hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0205 Plasma membrane H+-tra 100.0 2.7E-61 5.8E-66 465.3 4.0 200 1-214 743-942 (942)
2 TIGR01524 ATPase-IIIB_Mg magne 98.5 3.3E-07 7.2E-12 93.1 8.2 92 18-109 770-863 (867)
3 PRK10517 magnesium-transportin 98.5 5.4E-07 1.2E-11 92.1 9.1 92 18-109 805-898 (902)
4 PRK15122 magnesium-transportin 98.4 7E-07 1.5E-11 91.3 8.6 92 18-109 805-898 (903)
5 TIGR01647 ATPase-IIIA_H plasma 98.3 8.6E-07 1.9E-11 88.8 5.4 54 17-70 702-755 (755)
6 PF00689 Cation_ATPase_C: Cati 97.5 0.00021 4.6E-09 58.3 6.1 88 18-105 89-181 (182)
7 TIGR01106 ATPase-IIC_X-K sodiu 97.5 0.00042 9.2E-09 71.7 9.0 91 18-108 891-984 (997)
8 TIGR01522 ATPase-IIA2_Ca golgi 96.9 0.004 8.6E-08 63.8 9.0 90 18-107 787-880 (884)
9 TIGR01116 ATPase-IIA1_Ca sarco 96.9 0.003 6.5E-08 65.0 8.1 89 18-106 823-915 (917)
10 TIGR01523 ATPase-IID_K-Na pota 96.2 0.018 3.8E-07 60.5 8.4 91 18-109 937-1047(1053)
11 TIGR01517 ATPase-IIB_Ca plasma 96.2 0.017 3.7E-07 59.6 8.0 89 17-106 847-938 (941)
12 COG0474 MgtA Cation transport 95.1 0.07 1.5E-06 55.3 7.9 84 16-101 816-902 (917)
13 KOG0203 Na+/K+ ATPase, alpha s 71.7 0.47 1E-05 49.4 -3.0 92 19-110 914-1008(1019)
14 TIGR01657 P-ATPase-V P-type AT 58.7 20 0.00044 37.9 5.9 66 18-84 976-1046(1054)
15 KOG2927 Membrane component of 58.0 21 0.00046 34.0 5.2 32 43-75 181-212 (372)
16 PRK05978 hypothetical protein; 54.0 84 0.0018 26.3 7.7 50 49-105 71-122 (148)
17 PF03839 Sec62: Translocation 42.4 72 0.0016 28.4 5.9 29 47-75 105-133 (224)
18 PF10067 DUF2306: Predicted me 39.5 75 0.0016 24.2 4.9 34 39-72 2-35 (103)
19 KOG0202 Ca2+ transporting ATPa 38.3 44 0.00095 35.5 4.4 90 21-110 876-969 (972)
20 TIGR00727 ISP4_OPT small oligo 37.1 1.6E+02 0.0035 30.2 8.1 71 45-121 391-475 (681)
21 PRK12821 aspartyl/glutamyl-tRN 34.3 4.1E+02 0.0088 26.4 10.0 81 130-210 352-437 (477)
22 COG3462 Predicted membrane pro 34.2 1.7E+02 0.0036 23.7 6.2 13 106-118 67-79 (117)
23 KOG2262 Sexual differentiation 31.1 1.3E+02 0.0029 31.2 6.4 73 45-121 438-524 (761)
24 PF10777 YlaC: Inner membrane 30.7 1.1E+02 0.0023 26.0 4.8 49 46-101 33-81 (155)
25 PRK11212 hypothetical protein; 30.2 3.8E+02 0.0082 23.5 8.5 33 39-72 134-166 (210)
26 PF11169 DUF2956: Protein of u 30.0 50 0.0011 26.2 2.6 21 78-98 82-102 (103)
27 TIGR02916 PEP_his_kin putative 26.9 4.3E+02 0.0094 26.2 9.1 48 38-85 213-261 (679)
28 TIGR00383 corA magnesium Mg(2+ 26.1 3.2E+02 0.0068 24.2 7.4 11 75-85 282-292 (318)
29 PF04678 DUF607: Protein of un 25.3 2.1E+02 0.0045 24.0 5.7 48 50-97 94-141 (180)
30 PF10329 DUF2417: Region of un 23.4 5.4E+02 0.012 23.0 9.4 89 19-122 48-137 (232)
31 TIGR00869 sec62 protein transl 22.2 4E+02 0.0087 23.9 7.1 29 47-75 113-141 (232)
32 PRK13455 F0F1 ATP synthase sub 21.9 2.6E+02 0.0057 23.2 5.7 31 167-197 120-150 (184)
33 KOG2987 Fatty acid desaturase 21.3 1.8E+02 0.0039 27.1 4.8 36 51-97 44-79 (324)
34 PF03248 Rer1: Rer1 family; I 20.2 5.6E+02 0.012 22.0 8.3 32 42-73 99-130 (176)
No 1
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-61 Score=465.34 Aligned_cols=200 Identities=67% Similarity=1.090 Sum_probs=194.8
Q ss_pred CccCccccCcCCCCCccchHHHHHHHHHHhhhhheeeeecCCCCcccCChHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 048662 1 RTFGISSLNKKNVDDGRKLASAVYLQVSSISQAHLFVTHARSWSYVKCPVLFLALAFCVAQLTATLIAVYATWSFATIEG 80 (214)
Q Consensus 1 ~~fgv~~~~~~~~~~~~~lqT~~FLqlsis~qa~IFvtRtrg~fw~srPs~~Ll~A~l~a~liaTliAv~g~~~~~~m~~ 80 (214)
++|||+++.+|..+ +.+++|||+|+++|++||+||+|+|||.++||.+|++|++.+|+++|+||+|++|.|+.+.+
T Consensus 743 ~~f~v~~~~~~~~~----~~~a~ylqvsi~sqaliFvtrsr~w~~~erpg~~L~~af~~aqliatliavya~w~~a~i~~ 818 (942)
T KOG0205|consen 743 RTFGVRSLFGNEHE----LMSALYLQVSIISQALIFVTRSRSWSFVERPGWLLLIAFFAAQLIATLIAVYANWSFARITG 818 (942)
T ss_pred cccceeeccCCHHH----HHHhhhhhheehhceeeEEEeccCCccccCcHHHHHHHHHHHHHHHHHHHHHheecccceec
Confidence 47999999888774 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccccccChhHHHHHHHHhhhhhhcCCCCCCcccc
Q 048662 81 IGWGWAGVIWLYNIIFYILLDFIKFFIRYVLSRNFWDLVIEQRTAFTTKRDFGKEEHERRWAQEQRTLHGLHPRDTSMFS 160 (214)
Q Consensus 81 Igw~~~~~Iwly~iv~~l~lD~iK~~ir~~l~~~~~~~~~~~k~a~t~~~~~g~~~~~~~~a~~~~~l~~~~~~~~~~f~ 160 (214)
|+|+|.+++|+|++++|+++|++|+.+||.++|++|++++++|++||+|||||+|+|++|||.+|||+||+|+++
T Consensus 819 igw~w~gviw~ysi~~y~~ld~~kf~~~y~lsg~a~~~~~~~k~~~~~kk~~~~~~~~a~~~~~qrt~~~lq~~~----- 893 (942)
T KOG0205|consen 819 IGWGWAGVIWLYSIVFYIPLDILKFIIRYALSGKAWDRLIENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPE----- 893 (942)
T ss_pred ceeeeeeeEEEEEEEEEEechhhheehhhhhhhhHHHHHhcCcchhhhccccchhhhhhHHHHhhhhhcccCCCc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred cccccchhhhhHHHHHhhhhHHhhhhhhhcchhhhHhhhhcCCChhhhcccccC
Q 048662 161 VESSYGELSRMAEEAIRRAEIARLRELHTLKGQVESLIRLKGLDIDSILQSYSV 214 (214)
Q Consensus 161 ~~~~~~~~~~~~~~a~rr~~~a~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 214 (214)
-+|+|++|||+|||||+|||||+||||||||||+||||+|+|+| |||||
T Consensus 894 ----~~~~~~~a~~~~~~ae~~r~~e~~~l~g~vesv~klk~~d~~~~-~~~t~ 942 (942)
T KOG0205|consen 894 ----GRELSEIAEEAKRRAEIARLRELHTLKGHVESVVKLKGLDIETI-QHYTV 942 (942)
T ss_pred ----cchhhHHHHHHhhhhhhhhccchhhhhhhhHhhhhhcccchhhh-hhccC
Confidence 17999999999999999999999999999999999999999999 99997
No 2
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=98.49 E-value=3.3e-07 Score=93.12 Aligned_cols=92 Identities=7% Similarity=-0.012 Sum_probs=78.1
Q ss_pred chHHHHHHHHHHhhhhheeeeecCC-CCcccCChHHHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHH
Q 048662 18 KLASAVYLQVSSISQAHLFVTHARS-WSYVKCPVLFLALAFCVAQLTATLIAVYATWSFATIEGIGWGWAGVIWLYNIIF 96 (214)
Q Consensus 18 ~lqT~~FLqlsis~qa~IFvtRtrg-~fw~srPs~~Ll~A~l~a~liaTliAv~g~~~~~~m~~Igw~~~~~Iwly~iv~ 96 (214)
.+||++|+.+++++.+.+|+.|+++ +||+++|+..+++++++.+++++.+++.+...++++.|+|+.+..+.+++.+.+
T Consensus 770 ~~~t~~f~~~~~~~~~~~~~~R~~~~~~~~n~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~~~l~~~~~~~~~~~~~~~ 849 (867)
T TIGR01524 770 LFQSGWFVVGLLSQTLVVHMIRTEKIPFIQSRAAAPVMIATLLVMALGIIIPFSPLGHSIGLVSLPLSYFPWLIAILVGY 849 (867)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCcCCCCcCcchHHHHHHHHHHHHHHHHHHhchhhhhhhhccccCCccHHHHHHHHHHHH
Confidence 4799999999999999999999987 899999999999999999999999887543345789999888877777777777
Q ss_pred HHHHHHHHH-HHHH
Q 048662 97 YILLDFIKF-FIRY 109 (214)
Q Consensus 97 ~l~lD~iK~-~ir~ 109 (214)
.++.|+.|. ++|+
T Consensus 850 ~~~~e~~k~~~~~~ 863 (867)
T TIGR01524 850 MATMQLVKTFYIRR 863 (867)
T ss_pred HHHHHHHHHHHHHh
Confidence 778899998 4443
No 3
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=98.47 E-value=5.4e-07 Score=92.09 Aligned_cols=92 Identities=8% Similarity=0.002 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHhhhhheeeeecCC-CCcccCChHHHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHH
Q 048662 18 KLASAVYLQVSSISQAHLFVTHARS-WSYVKCPVLFLALAFCVAQLTATLIAVYATWSFATIEGIGWGWAGVIWLYNIIF 96 (214)
Q Consensus 18 ~lqT~~FLqlsis~qa~IFvtRtrg-~fw~srPs~~Ll~A~l~a~liaTliAv~g~~~~~~m~~Igw~~~~~Iwly~iv~ 96 (214)
.+|+++|+.+++++.+.+|++|+++ +||+++|+..+++++++.+++++.+++.+..+++++.|+|+.+..+.+++.+.+
T Consensus 805 ~~~~~~F~~~~~~q~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 884 (902)
T PRK10517 805 LFQSGWFVVGLLSQTLIVHMIRTRRIPFIQSRAAWPLMIMTLIVMAVGIALPFSPLASYLQLQALPLSYFPWLVAILAGY 884 (902)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCcccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhCCcCCChhHHHHHHHHHHHH
Confidence 4788999999999999999999997 899999999999999999999999995554556789999988888878887888
Q ss_pred HHHHHHHHH-HHHH
Q 048662 97 YILLDFIKF-FIRY 109 (214)
Q Consensus 97 ~l~lD~iK~-~ir~ 109 (214)
.++.++.|. ++|+
T Consensus 885 ~~~~e~~K~~~~~~ 898 (902)
T PRK10517 885 MTLTQLVKGFYSRR 898 (902)
T ss_pred HHHHHHHHHHHHHh
Confidence 888899998 4444
No 4
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=98.42 E-value=7e-07 Score=91.27 Aligned_cols=92 Identities=10% Similarity=0.068 Sum_probs=79.5
Q ss_pred chHHHHHHHHHHhhhhheeeeecCC-CCcccCChHHHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHH
Q 048662 18 KLASAVYLQVSSISQAHLFVTHARS-WSYVKCPVLFLALAFCVAQLTATLIAVYATWSFATIEGIGWGWAGVIWLYNIIF 96 (214)
Q Consensus 18 ~lqT~~FLqlsis~qa~IFvtRtrg-~fw~srPs~~Ll~A~l~a~liaTliAv~g~~~~~~m~~Igw~~~~~Iwly~iv~ 96 (214)
.++|++|+.+++++.+.+|+.|+++ ++|+++|+...++++++.+++.+.+++.+...++++.|+|+...++++++++++
T Consensus 805 ~~~t~~f~~l~~~q~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~~~l~~~~~~~~~~~~~~~ 884 (903)
T PRK15122 805 LFQSGWFIEGLLSQTLVVHMLRTQKIPFIQSTAALPVLLTTGLIMAIGIYIPFSPLGAMVGLEPLPWSYFPWLAATLLGY 884 (903)
T ss_pred hhHHHHHHHHHHHHHHHHHhhCcCCCCcCcchHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999999986 889999999999999999999999987333345789999999888889999999
Q ss_pred HHHHHHHHH-HHHH
Q 048662 97 YILLDFIKF-FIRY 109 (214)
Q Consensus 97 ~l~lD~iK~-~ir~ 109 (214)
+++.++.|. ++|.
T Consensus 885 ~~~~e~~k~~~~r~ 898 (903)
T PRK15122 885 CLVAQGMKRFYIRR 898 (903)
T ss_pred HHHHHHHHHHHhhh
Confidence 999999997 4443
No 5
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=98.28 E-value=8.6e-07 Score=88.85 Aligned_cols=54 Identities=44% Similarity=0.637 Sum_probs=51.6
Q ss_pred cchHHHHHHHHHHhhhhheeeeecCCCCcccCChHHHHHHHHHHHHHHHHHHHH
Q 048662 17 RKLASAVYLQVSSISQAHLFVTHARSWSYVKCPVLFLALAFCVAQLTATLIAVY 70 (214)
Q Consensus 17 ~~lqT~~FLqlsis~qa~IFvtRtrg~fw~srPs~~Ll~A~l~a~liaTliAv~ 70 (214)
++.||++|+++++++++++|++|+++.+|.++||++|++++++++++++++++|
T Consensus 702 ~~~~t~~f~~~~~~~~~~~~~~r~~~~~~~~~p~~~l~~~~~~~~~~~~~~~~~ 755 (755)
T TIGR01647 702 GNLQSLIYLQVSISGQATIFVTRTHGFFWSERPGKLLFIAFVIAQIIATFIAVY 755 (755)
T ss_pred hhhHHHHHHHHHHHHHHHHheeccCCCCcccCCcHHHHHHHHHHHHHHHHHhhC
Confidence 369999999999999999999999999999999999999999999999999864
No 6
>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....
Probab=97.53 E-value=0.00021 Score=58.35 Aligned_cols=88 Identities=9% Similarity=0.050 Sum_probs=69.7
Q ss_pred chHHHHHHHHHHhhhhheeeeecCC-CCcc-c--CChHHHHHHHHHHHHHHHHHHHHh-cccccccccCchHHHHHHHHH
Q 048662 18 KLASAVYLQVSSISQAHLFVTHARS-WSYV-K--CPVLFLALAFCVAQLTATLIAVYA-TWSFATIEGIGWGWAGVIWLY 92 (214)
Q Consensus 18 ~lqT~~FLqlsis~qa~IFvtRtrg-~fw~-s--rPs~~Ll~A~l~a~liaTliAv~g-~~~~~~m~~Igw~~~~~Iwly 92 (214)
+-||++|..+++++-+.+|+.|+++ ..|. . +..++++.+.++..++..++.+.+ ...++++.++++...+++++.
T Consensus 89 ~a~T~~F~~lv~~q~~~~~~~r~~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~i~~~P~~~~~f~~~~l~~~~w~~~l~~ 168 (182)
T PF00689_consen 89 QAQTMAFTALVLSQLFNAFNCRSRRRSVFRFRGIFSNKWLLIAILISIALQILIVYVPGLNRIFGTAPLPLWQWLICLAL 168 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSSSTCTT-STGGGSHHHHHHHHHHHHHHHHHHHSTTHHHHST----THHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccccccccceecccccccchHHHHHHHHHHHHHHHhcchhhHhhhcccCCCHHHHHHHHHH
Confidence 4899999999999999999999964 4554 2 357889999999888888888875 334578899998888888999
Q ss_pred HHHHHHHHHHHHH
Q 048662 93 NIIFYILLDFIKF 105 (214)
Q Consensus 93 ~iv~~l~lD~iK~ 105 (214)
+++.++..++.|.
T Consensus 169 ~~~~~~~~ei~K~ 181 (182)
T PF00689_consen 169 ALLPFIVDEIRKL 181 (182)
T ss_dssp HCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999886
No 7
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=97.48 E-value=0.00042 Score=71.74 Aligned_cols=91 Identities=12% Similarity=0.208 Sum_probs=72.3
Q ss_pred chHHHHHHHHHHhhhhheeeeecCC-CCc-ccCChHHHHHHHHHHHHHHHHHHHHh-cccccccccCchHHHHHHHHHHH
Q 048662 18 KLASAVYLQVSSISQAHLFVTHARS-WSY-VKCPVLFLALAFCVAQLTATLIAVYA-TWSFATIEGIGWGWAGVIWLYNI 94 (214)
Q Consensus 18 ~lqT~~FLqlsis~qa~IFvtRtrg-~fw-~srPs~~Ll~A~l~a~liaTliAv~g-~~~~~~m~~Igw~~~~~Iwly~i 94 (214)
+.+|++|+.+++++.+.+|..|+++ .+| .+.+.++|+.++++..++..++.+.+ ...++++.|++|.+.++++++++
T Consensus 891 ~~~t~~f~~~v~~q~~~~~~~R~~~~~~f~~~~~n~~l~~~~~~~~~l~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~~ 970 (997)
T TIGR01106 891 TCHTAFFVSIVVVQWADLIICKTRRNSVFQQGMKNKILIFGLFEETALAAFLSYCPGMGVALRMYPLKPTWWFCAFPYSL 970 (997)
T ss_pred hhhHHHHHHHHHHHHHHHHHhccCcccccccCCcCHHHHHHHHHHHHHHHHHHHhhhhHHHhccccCCHHHHHHHHHHHH
Confidence 4799999999999999999999975 344 44788899999998888888888876 34567899999988777788887
Q ss_pred HHHHHHHHHHHHHH
Q 048662 95 IFYILLDFIKFFIR 108 (214)
Q Consensus 95 v~~l~lD~iK~~ir 108 (214)
++++...+.|.+.|
T Consensus 971 ~~~~~~~~~k~~~r 984 (997)
T TIGR01106 971 LIFVYDEIRKLIIR 984 (997)
T ss_pred HHHHHHHHHHHHHH
Confidence 77655555555444
No 8
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=96.91 E-value=0.004 Score=63.80 Aligned_cols=90 Identities=9% Similarity=0.005 Sum_probs=68.2
Q ss_pred chHHHHHHHHHHhhhhheeeeecCCCC-ccc--CChHHHHHHHHHHHHHHHHHHHHhc-ccccccccCchHHHHHHHHHH
Q 048662 18 KLASAVYLQVSSISQAHLFVTHARSWS-YVK--CPVLFLALAFCVAQLTATLIAVYAT-WSFATIEGIGWGWAGVIWLYN 93 (214)
Q Consensus 18 ~lqT~~FLqlsis~qa~IFvtRtrg~f-w~s--rPs~~Ll~A~l~a~liaTliAv~g~-~~~~~m~~Igw~~~~~Iwly~ 93 (214)
+-+|++|..+++++.+..|..|+++.+ |.. .+.++++.++++..++..++.+.+. ..+++..|++|...+++++++
T Consensus 787 ~~~t~~f~~~v~~q~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~~w~~~~~~~ 866 (884)
T TIGR01522 787 RDTTMTFTCFVFFDMFNALACRSQTKSVFEIGFFSNRMFNYAVGGSIIGQLLVIYFPPLQSVFQTEALSIKDLLFLLLIT 866 (884)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccCCccccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999997654 332 3567888888887777766665543 356678999997767777777
Q ss_pred HHHHHHHHHHHHHH
Q 048662 94 IIFYILLDFIKFFI 107 (214)
Q Consensus 94 iv~~l~lD~iK~~i 107 (214)
++.++...+.|.+.
T Consensus 867 ~~~~~~~~~~k~~~ 880 (884)
T TIGR01522 867 SSVCIVDEIRKKVE 880 (884)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777643
No 9
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=96.91 E-value=0.003 Score=64.96 Aligned_cols=89 Identities=11% Similarity=0.039 Sum_probs=69.7
Q ss_pred chHHHHHHHHHHhhhhheeeeecCCCC-ccc--CChHHHHHHHHHHHHHHHHHHHHhc-ccccccccCchHHHHHHHHHH
Q 048662 18 KLASAVYLQVSSISQAHLFVTHARSWS-YVK--CPVLFLALAFCVAQLTATLIAVYAT-WSFATIEGIGWGWAGVIWLYN 93 (214)
Q Consensus 18 ~lqT~~FLqlsis~qa~IFvtRtrg~f-w~s--rPs~~Ll~A~l~a~liaTliAv~g~-~~~~~m~~Igw~~~~~Iwly~ 93 (214)
+-+|+.|..+++++.+..|..|+++.. |.. .+.++++.++++..++..++.+.+. ..+++..|++|...+++++++
T Consensus 823 ~~~t~~f~~~v~~q~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~~~~~l~~~~~~v~~~~~~f~~~~l~~~~w~~~~~~~ 902 (917)
T TIGR01116 823 PARTISLSVLVVIEMFNALNALSEDQSLLRMPPWVNKWLIGAICLSMALHFLILYVPFLSRIFGVTPLSLTDWLMVLKLS 902 (917)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCcccccccCCccCHHHHHHHHHHHHHHHHHHHhHHHHHHhccCCCCHHHHHHHHHHH
Confidence 468999999999999999999997543 432 2467888888888877777666553 246788999998888888888
Q ss_pred HHHHHHHHHHHHH
Q 048662 94 IIFYILLDFIKFF 106 (214)
Q Consensus 94 iv~~l~lD~iK~~ 106 (214)
++.++..++.|++
T Consensus 903 ~~~~~~~e~~k~~ 915 (917)
T TIGR01116 903 LPVILVDEVLKFF 915 (917)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777888864
No 10
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=96.20 E-value=0.018 Score=60.51 Aligned_cols=91 Identities=18% Similarity=0.080 Sum_probs=68.3
Q ss_pred chHHHHHHHHHHhhhhheeeeecCCC-Cccc-----------------CChHHHHHHHHHHHHHHHHHHHHhcc-c-ccc
Q 048662 18 KLASAVYLQVSSISQAHLFVTHARSW-SYVK-----------------CPVLFLALAFCVAQLTATLIAVYATW-S-FAT 77 (214)
Q Consensus 18 ~lqT~~FLqlsis~qa~IFvtRtrg~-fw~s-----------------rPs~~Ll~A~l~a~liaTliAv~g~~-~-~~~ 77 (214)
+-+|+.|..+++++.+.+|..|+++. +|.. ...++|+.++++..++..++.+.+.. . +++
T Consensus 937 ~a~t~~f~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~l~~~~~~~~~l~~~~~~~p~~~~~~f~ 1016 (1053)
T TIGR01523 937 KARSAAFATMTFCALILAVEVKDFDNSFFNLHGIPDGDSNFKEFFHSIVENKFLAWAIAFAAVSAFPTIYIPVINDDVFK 1016 (1053)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCchhhhhcCccccccccccccccCCccCHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Confidence 56899999999999999999999853 3432 13567888888888887777776655 2 678
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048662 78 IEGIGWGWAGVIWLYNIIFYILLDFIKFFIRY 109 (214)
Q Consensus 78 m~~Igw~~~~~Iwly~iv~~l~lD~iK~~ir~ 109 (214)
..|++|.|.. +.+.+++.++..++.|.+.|.
T Consensus 1017 ~~~l~~~w~~-~~~~~~~~~~~~e~~K~~~r~ 1047 (1053)
T TIGR01523 1017 HKPIGAEWGL-AAAATIAFFFGAEIWKCGKRR 1047 (1053)
T ss_pred cCCcchHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 9999987754 566677777777888875443
No 11
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=96.16 E-value=0.017 Score=59.60 Aligned_cols=89 Identities=8% Similarity=-0.035 Sum_probs=60.3
Q ss_pred cchHHHHHHHHHHhhhhheeeeecCC--CCcccCC-hHHHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHHH
Q 048662 17 RKLASAVYLQVSSISQAHLFVTHARS--WSYVKCP-VLFLALAFCVAQLTATLIAVYATWSFATIEGIGWGWAGVIWLYN 93 (214)
Q Consensus 17 ~~lqT~~FLqlsis~qa~IFvtRtrg--~fw~srP-s~~Ll~A~l~a~liaTliAv~g~~~~~~m~~Igw~~~~~Iwly~ 93 (214)
.+.+|+.|..+++.+.+.+|..|+.+ .+|...+ .++++.++++..++..++..+ ...+++..|++|...+++.+.+
T Consensus 847 ~~~~t~~f~~~v~~~~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~~~~~l~~~~~~~-~~~~f~~~~l~~~~w~~~~~~~ 925 (941)
T TIGR01517 847 GELNTIVFNTFVLLQLFNEINARKLYERNVFEGLFKNRIFVTIMGFTFGFQVIIVEF-GGSFFSTVSLSIEQWIGCVLLG 925 (941)
T ss_pred chhhHHHHHHHHHHHHHHHHHHccCCcccccccccccHHHHHHHHHHHHHHHHHHHH-HHHHhcccCCCHHHHHHHHHHH
Confidence 46899999999999999999999975 4664322 345666666666655444333 3456788999986555555555
Q ss_pred HHHHHHHHHHHHH
Q 048662 94 IIFYILLDFIKFF 106 (214)
Q Consensus 94 iv~~l~lD~iK~~ 106 (214)
++.++...+.|++
T Consensus 926 ~~~~~~~~~~~~~ 938 (941)
T TIGR01517 926 MLSLIFGVLLRLI 938 (941)
T ss_pred HHHHHHHHHHHhc
Confidence 5555555666653
No 12
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=95.14 E-value=0.07 Score=55.26 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=63.9
Q ss_pred ccchHHHHHHHHHHhhhhheeeeecCCCCcccC---ChHHHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHH
Q 048662 16 GRKLASAVYLQVSSISQAHLFVTHARSWSYVKC---PVLFLALAFCVAQLTATLIAVYATWSFATIEGIGWGWAGVIWLY 92 (214)
Q Consensus 16 ~~~lqT~~FLqlsis~qa~IFvtRtrg~fw~sr---Ps~~Ll~A~l~a~liaTliAv~g~~~~~~m~~Igw~~~~~Iwly 92 (214)
...++|++|..+++++++..|.+|+.+.+|.+. +.+.++++.++..++..++.+++......+.+.++. ..-|++
T Consensus 816 ~~~~~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~l~l~~~~~~~~~~~~f~~~~~~--~~~~~~ 893 (917)
T COG0474 816 QALLQTTAFTVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPTPLS--LFEWLI 893 (917)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchhhcccccCHHHHHHHHHHHHHHHHHHHhHHhHhhhccCCCCc--HHHHHH
Confidence 446999999999999999999999997777655 899999999999999999988886542234444444 455666
Q ss_pred HHHHHHHHH
Q 048662 93 NIIFYILLD 101 (214)
Q Consensus 93 ~iv~~l~lD 101 (214)
.+.+..+..
T Consensus 894 ~~~~~~~~~ 902 (917)
T COG0474 894 AIAVALLLL 902 (917)
T ss_pred HHHHHHHHH
Confidence 665554443
No 13
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=71.68 E-value=0.47 Score=49.38 Aligned_cols=92 Identities=15% Similarity=0.210 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHhhhhheeeeecCCC--CcccCChHHHHHHHHHHHHHHHHHHHHhccc-ccccccCchHHHHHHHHHHHH
Q 048662 19 LASAVYLQVSSISQAHLFVTHARSW--SYVKCPVLFLALAFCVAQLTATLIAVYATWS-FATIEGIGWGWAGVIWLYNII 95 (214)
Q Consensus 19 lqT~~FLqlsis~qa~IFvtRtrg~--fw~srPs~~Ll~A~l~a~liaTliAv~g~~~-~~~m~~Igw~~~~~Iwly~iv 95 (214)
.+|+.|+.++..+-+-++++-||+- |=+-+-.+.|..|.+...+++.++++.+... ..+|.|+.|.|......|++.
T Consensus 914 c~taFfvsIvV~Q~adLii~KTRRnSlfqqGmrN~vl~f~v~~e~~La~fl~y~pg~~~~l~~~pl~~~~wl~a~P~~il 993 (1019)
T KOG0203|consen 914 CYTAFFISIVVVQWADLIICKTRRNSIFQQGMRNKVLIFAVIFETCLACFLCYCPGVLYALGMYPLKFQWWLVAFPFGIL 993 (1019)
T ss_pred hhhheeeeehHHhHhhHHhhhcchhHHHHhhhhhhhHHHHHHHHHHHHHHHhcCccHHHHhccCCCCcEEEEecccceee
Confidence 6789999999999888888888864 3356788899999999999999999987542 247889999887777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 048662 96 FYILLDFIKFFIRYV 110 (214)
Q Consensus 96 ~~l~lD~iK~~ir~~ 110 (214)
-++.-++=|+++|..
T Consensus 994 IfvydE~Rk~~IR~~ 1008 (1019)
T KOG0203|consen 994 IFVYDEVRKLFIRRY 1008 (1019)
T ss_pred eeeHHHHHhHhhhhC
Confidence 676666666676653
No 14
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=58.66 E-value=20 Score=37.93 Aligned_cols=66 Identities=8% Similarity=-0.034 Sum_probs=39.4
Q ss_pred chHHHHHHHHHHhhhhheeeeecCCCCcccC--ChHHHHHHHHHHHHHHHHHHH--Hh-cccccccccCchH
Q 048662 18 KLASAVYLQVSSISQAHLFVTHARSWSYVKC--PVLFLALAFCVAQLTATLIAV--YA-TWSFATIEGIGWG 84 (214)
Q Consensus 18 ~lqT~~FLqlsis~qa~IFvtRtrg~fw~sr--Ps~~Ll~A~l~a~liaTliAv--~g-~~~~~~m~~Igw~ 84 (214)
...|++| .++..+++.+|+++++|.+|..+ -.++++.+.++..++..++++ .+ ...++.+.|+|..
T Consensus 976 ~~~T~~f-~~~~~~~~~~~~~~~~g~pf~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 1046 (1054)
T TIGR01657 976 LLNTVLF-FVSSFQYLITAIVNSKGPPFREPIYKNKPFVYLLITGLGLLLVLLLDPHPLLGKILQIVPLPQE 1046 (1054)
T ss_pred HHHHHHH-HHHHHHHHHheEEEcCCcchhhhHHHhHHHHHHHHHHHHHHHHhhhCCCHHHHhhheeeeCCHH
Confidence 4679999 66777888889999998777543 233455555554333332333 11 2234566677744
No 15
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.98 E-value=21 Score=34.00 Aligned_cols=32 Identities=22% Similarity=0.573 Sum_probs=22.0
Q ss_pred CCcccCChHHHHHHHHHHHHHHHHHHHHhcccc
Q 048662 43 WSYVKCPVLFLALAFCVAQLTATLIAVYATWSF 75 (214)
Q Consensus 43 ~fw~srPs~~Ll~A~l~a~liaTliAv~g~~~~ 75 (214)
|-+..+|-.++++++++ .+++..|++|+.|+-
T Consensus 181 W~yep~~~~~~vl~~~f-vl~tlaivLFPLWP~ 212 (372)
T KOG2927|consen 181 WIYEPRPLMWQVLGVLF-VLVTLAIVLFPLWPR 212 (372)
T ss_pred EeccCCchhHHHHHHHH-HHHHHHHHhcccCcH
Confidence 33455677777777776 556666888888865
No 16
>PRK05978 hypothetical protein; Provisional
Probab=54.02 E-value=84 Score=26.27 Aligned_cols=50 Identities=22% Similarity=0.250 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHHH--HHHHHHHHHHHH
Q 048662 49 PVLFLALAFCVAQLTATLIAVYATWSFATIEGIGWGWAGVIWLYN--IIFYILLDFIKF 105 (214)
Q Consensus 49 Ps~~Ll~A~l~a~liaTliAv~g~~~~~~m~~Igw~~~~~Iwly~--iv~~l~lD~iK~ 105 (214)
|. .+.+++++..+++.++.++-.+ ..|+..-.++|++. ++..+++-.+|.
T Consensus 71 pA-y~~i~ivg~ivv~~~l~~~~~~------~pp~w~~~~i~~~l~lil~L~LL~p~KG 122 (148)
T PRK05978 71 PA-YLVIVIVGHIVVGGFMGTETTF------NLPVWLHLAIWLPITLIASLALLQPIKG 122 (148)
T ss_pred Cc-chhHHHHHHHHHHHHHHHHHHc------CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 7778888888888888775432 23555555566654 444556677776
No 17
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=42.45 E-value=72 Score=28.36 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=16.1
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhcccc
Q 048662 47 KCPVLFLALAFCVAQLTATLIAVYATWSF 75 (214)
Q Consensus 47 srPs~~Ll~A~l~a~liaTliAv~g~~~~ 75 (214)
++++..-.+..++..+++..++.|++|+.
T Consensus 105 e~~~~~~~l~~~~~~~~v~a~~lFPlWP~ 133 (224)
T PF03839_consen 105 EPSPLMQYLIGALLLVGVIAICLFPLWPR 133 (224)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhhhcChH
Confidence 34444433343444444557778888865
No 18
>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function.
Probab=39.53 E-value=75 Score=24.24 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=25.5
Q ss_pred ecCCCCcccCChHHHHHHHHHHHHHHHHHHHHhc
Q 048662 39 HARSWSYVKCPVLFLALAFCVAQLTATLIAVYAT 72 (214)
Q Consensus 39 Rtrg~fw~srPs~~Ll~A~l~a~liaTliAv~g~ 72 (214)
|.|++-+...=|..-+.+.+++.+.+..|+.+..
T Consensus 2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~i~~~~~ 35 (103)
T PF10067_consen 2 RRKGPRLHRWLGRVYVAAMLISALSALFIAFYAP 35 (103)
T ss_pred CCCcccHHHhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566666666788888888888888888877754
No 19
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=38.28 E-value=44 Score=35.47 Aligned_cols=90 Identities=10% Similarity=0.034 Sum_probs=62.0
Q ss_pred HHHHHHHHHhhhhheeeeecCC-CCcccC--ChHHHHHHHHHHHHHHHHHHHHhcc-cccccccCchHHHHHHHHHHHHH
Q 048662 21 SAVYLQVSSISQAHLFVTHARS-WSYVKC--PVLFLALAFCVAQLTATLIAVYATW-SFATIEGIGWGWAGVIWLYNIIF 96 (214)
Q Consensus 21 T~~FLqlsis~qa~IFvtRtrg-~fw~sr--Ps~~Ll~A~l~a~liaTliAv~g~~-~~~~m~~Igw~~~~~Iwly~iv~ 96 (214)
|+.|--+++...+.-...|+.. ..|.-+ -.+||+.|+.++.+...++-+.+.. ..+..+|++|.-.+++...++-+
T Consensus 876 tMa~tv~V~~emfNaL~~~se~~slf~~~~~~N~~l~~ai~~S~~~~f~ilYvp~l~~iFq~~~l~~~ew~~vl~~s~~V 955 (972)
T KOG0202|consen 876 TMALTVLVFIEMFNALNCLSENKSLFTMPPWSNRWLLWAIALSFVLHFLVLYVPPLQRIFQTEPLSLAEWLLVLAISSPV 955 (972)
T ss_pred eEEEeehhHHHHHHHhhcccCCcceEEecccccHHHHHHHHHHHHhhheEEEechhhhhheecCCcHHHHHHHHHHhhhh
Confidence 4444445556666666677653 223222 3458999988888777776665543 34678899998888888888888
Q ss_pred HHHHHHHHHHHHHH
Q 048662 97 YILLDFIKFFIRYV 110 (214)
Q Consensus 97 ~l~lD~iK~~ir~~ 110 (214)
+++-++.|++-|..
T Consensus 956 ~i~dEilK~~~R~~ 969 (972)
T KOG0202|consen 956 IIVDEILKFIARNY 969 (972)
T ss_pred hhHHHHHHHHHHhc
Confidence 88999999976653
No 20
>TIGR00727 ISP4_OPT small oligopeptide transporter, OPT family. This model represents a family of transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. A set of related proteins from the plant Arabidopsis thaliana forms an outgroup to the yeast set by neighbor joining analysis but is remarkably well conserved and is predicted here to have equivalent function.
Probab=37.12 E-value=1.6e+02 Score=30.24 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=51.8
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHHHHHHH--------------HHHHHHHHH
Q 048662 45 YVKCPVLFLALAFCVAQLTATLIAVYATWSFATIEGIGWGWAGVIWLYNIIFYILLD--------------FIKFFIRYV 110 (214)
Q Consensus 45 w~srPs~~Ll~A~l~a~liaTliAv~g~~~~~~m~~Igw~~~~~Iwly~iv~~l~lD--------------~iK~~ir~~ 110 (214)
+.+-|.+|-++.++++.+++. +++.. | -..+||.-..+..+.++++.+|+- +.+++.-|+
T Consensus 391 Y~evP~WWy~~~l~is~~~~~-~~v~~-~----~t~lP~W~~~lal~l~~i~~iP~~~i~a~t~~~~~ln~l~eli~Gy~ 464 (681)
T TIGR00727 391 YKEVPDWWYLAVFLGFFGMGI-ATVEH-W----PTETPVWGLFVCLIFNFVFLIPTTILQATTNISFGLNVLTEFIVGYA 464 (681)
T ss_pred CCCCcHHHHHHHHHHHHHHHH-HHHhh-C----CCCCCHHHHHHHHHHHHHHHHhhhheEeecCCccchhHHHHHHhhhc
Confidence 467799999888888777773 33433 2 237888888888888999988776 455678888
Q ss_pred hhhhhhhhhhh
Q 048662 111 LSRNFWDLVIE 121 (214)
Q Consensus 111 l~~~~~~~~~~ 121 (214)
++|++-.+++=
T Consensus 465 ~PG~p~a~~~f 475 (681)
T TIGR00727 465 LPGRPLAMMIF 475 (681)
T ss_pred cCCCchHHHHH
Confidence 88877666554
No 21
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=34.35 E-value=4.1e+02 Score=26.41 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=40.6
Q ss_pred cccChhHHHHHHHHhhhhhhcCCCCCCccccccc----ccchhhhhHHHHHhhhhHHhhhhh-hhcchhhhHhhhhcCCC
Q 048662 130 RDFGKEEHERRWAQEQRTLHGLHPRDTSMFSVES----SYGELSRMAEEAIRRAEIARLREL-HTLKGQVESLIRLKGLD 204 (214)
Q Consensus 130 ~~~g~~~~~~~~a~~~~~l~~~~~~~~~~f~~~~----~~~~~~~~~~~a~rr~~~a~l~~~-~~l~~~~~~~~~~~~~~ 204 (214)
+||..+-.|.|-..-..++.-+|+|--..+..+. +-.++.++|.-||=+.+-+++.++ ..|+.-++-+-+++.+|
T Consensus 352 ~~~~~~~~e~~~~~~~~~~s~l~s~~m~~~~~~~k~~ItkEeVkKLAkLARLeLSEEElEkl~~dLn~ILdyVEkLnEVD 431 (477)
T PRK12821 352 KGFKTELSETQTKGIKKSFSDLQSPLFPKHWTSKKQQLNKDELKKLARLVMFDLDDAELEKLQVEFKDITSSFKQVEKID 431 (477)
T ss_pred hhhHHHHHHHhhhhhhhhhhhhcChhhhhhhccccccCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcccC
Confidence 4555566666666666777777777311111111 112333444444433333332222 23344455566788888
Q ss_pred hhhhcc
Q 048662 205 IDSILQ 210 (214)
Q Consensus 205 ~~~~~~ 210 (214)
-+.+.+
T Consensus 432 TegVEP 437 (477)
T PRK12821 432 TTNVKP 437 (477)
T ss_pred cCCCCC
Confidence 887654
No 22
>COG3462 Predicted membrane protein [Function unknown]
Probab=34.18 E-value=1.7e+02 Score=23.70 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=6.5
Q ss_pred HHHHHhhhhhhhh
Q 048662 106 FIRYVLSRNFWDL 118 (214)
Q Consensus 106 ~ir~~l~~~~~~~ 118 (214)
++-+.+....|.+
T Consensus 67 fm~~~~g~~r~~~ 79 (117)
T COG3462 67 FMFYILGAVRRGS 79 (117)
T ss_pred HHHHHHHHhcccc
Confidence 4455554445544
No 23
>KOG2262 consensus Sexual differentiation process protein ISP4 [Signal transduction mechanisms]
Probab=31.05 E-value=1.3e+02 Score=31.19 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=50.9
Q ss_pred cccCChHHHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
Q 048662 45 YVKCPVLFLALAFCVAQLTATLIAVYATWSFATIEGIGWGWAGVIWLYNIIFYILLDFIK--------------FFIRYV 110 (214)
Q Consensus 45 w~srPs~~Ll~A~l~a~liaTliAv~g~~~~~~m~~Igw~~~~~Iwly~iv~~l~lD~iK--------------~~ir~~ 110 (214)
+++-|.+|.+.-.++...++..++.+ +-....+||.-..+.-++++++++|+-++- .++-|+
T Consensus 438 YKeVP~WWf~~ili~s~~l~~~~~~~----~~~~~q~PwWg~~va~~ia~vf~iPigii~AtTNq~~GLNiitE~i~Gy~ 513 (761)
T KOG2262|consen 438 YKEVPDWWFLAILIVSLGLGLAACEG----YKTQVQLPWWGLLVACAIAFVFTIPIGIIQATTNQTPGLNIITEYIIGYI 513 (761)
T ss_pred hccCcHHHHHHHHHHHHHHHhhheee----ecccccCchHHHHHHHHHHHHHhccHHHhhhhccCCccHHHHHHHHHHhh
Confidence 56779888886555555554444333 122337888888888999999999987754 357888
Q ss_pred hhhhhhhhhhh
Q 048662 111 LSRNFWDLVIE 121 (214)
Q Consensus 111 l~~~~~~~~~~ 121 (214)
++|++--|+.=
T Consensus 514 ~PgrPiAn~~F 524 (761)
T KOG2262|consen 514 YPGRPIANLCF 524 (761)
T ss_pred cCCchHHHHHH
Confidence 88887777544
No 24
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=30.69 E-value=1.1e+02 Score=26.03 Aligned_cols=49 Identities=24% Similarity=0.509 Sum_probs=26.9
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHHHHHHH
Q 048662 46 VKCPVLFLALAFCVAQLTATLIAVYATWSFATIEGIGWGWAGVIWLYNIIFYILLD 101 (214)
Q Consensus 46 ~srPs~~Ll~A~l~a~liaTliAv~g~~~~~~m~~Igw~~~~~Iwly~iv~~l~lD 101 (214)
..-| .|.+|..++-+...++.+++. .=|.+|-|...+....+..++.+|
T Consensus 33 ~~HP--~L~~~M~~~y~~~~~lm~~sp-----y~G~~s~~~ftv~fv~m~~~llfD 81 (155)
T PF10777_consen 33 RNHP--YLCLAMYAAYLAVAALMYYSP-----YFGLGSVWGFTVFFVVMAAFLLFD 81 (155)
T ss_pred HhCc--HHHHHHHHHHHHHHHHHHhcc-----hhhhHHHHHHHHHHHHHHHHHHhh
Confidence 3446 667777777776666666642 114444444444444444444455
No 25
>PRK11212 hypothetical protein; Provisional
Probab=30.22 E-value=3.8e+02 Score=23.48 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=24.3
Q ss_pred ecCCCCcccCChHHHHHHHHHHHHHHHHHHHHhc
Q 048662 39 HARSWSYVKCPVLFLALAFCVAQLTATLIAVYAT 72 (214)
Q Consensus 39 Rtrg~fw~srPs~~Ll~A~l~a~liaTliAv~g~ 72 (214)
|.+++.|- |+-..-+++-++|.++...+|+||.
T Consensus 134 K~~k~lWl-Rn~~ST~vsq~iDT~IF~~IAF~g~ 166 (210)
T PRK11212 134 RQSRAWWV-APTASTLFGNLSDTLAFFFIAFYRS 166 (210)
T ss_pred Hccchhhh-hHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 55566775 6766677788888888888888874
No 26
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=30.03 E-value=50 Score=26.22 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=17.8
Q ss_pred cccCchHHHHHHHHHHHHHHH
Q 048662 78 IEGIGWGWAGVIWLYNIIFYI 98 (214)
Q Consensus 78 m~~Igw~~~~~Iwly~iv~~l 98 (214)
...|||..+++.|+-.++|++
T Consensus 82 ~~~LPW~LL~lSW~gF~~Y~~ 102 (103)
T PF11169_consen 82 SSWLPWGLLVLSWIGFIAYIF 102 (103)
T ss_pred ccchhHHHHHHHHHHHHHHHH
Confidence 457999999999998888875
No 27
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=26.91 E-value=4.3e+02 Score=26.18 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=25.5
Q ss_pred eecCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcccc-cccccCchHH
Q 048662 38 THARSWSYVKCPVLFLALAFCVAQLTATLIAVYATWSF-ATIEGIGWGW 85 (214)
Q Consensus 38 tRtrg~fw~srPs~~Ll~A~l~a~liaTliAv~g~~~~-~~m~~Igw~~ 85 (214)
.|.|.|--.-..|..++..++...+++.-+++.+..+. ...-+-+|+-
T Consensus 213 ~r~~~~~~~~~~sr~~~~~~~~~~~~g~yl~~~~~~~~~~~~~gg~~~~ 261 (679)
T TIGR02916 213 ARNPDWSVRIAVSREMAFHSATLLGAGLYLLAMAGAGYYLRYFGGEWGD 261 (679)
T ss_pred hcccCCCcceeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHH
Confidence 34444433345777787777777777655554443322 1122456663
No 28
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=26.06 E-value=3.2e+02 Score=24.23 Aligned_cols=11 Identities=18% Similarity=0.788 Sum_probs=6.2
Q ss_pred ccccccCchHH
Q 048662 75 FATIEGIGWGW 85 (214)
Q Consensus 75 ~~~m~~Igw~~ 85 (214)
|..|+.+.|.|
T Consensus 282 f~~mP~l~~~~ 292 (318)
T TIGR00383 282 FKFMPELNWKY 292 (318)
T ss_pred cccCccccchh
Confidence 33477666654
No 29
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=25.27 E-value=2.1e+02 Score=24.03 Aligned_cols=48 Identities=15% Similarity=0.193 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHHH
Q 048662 50 VLFLALAFCVAQLTATLIAVYATWSFATIEGIGWGWAGVIWLYNIIFY 97 (214)
Q Consensus 50 s~~Ll~A~l~a~liaTliAv~g~~~~~~m~~Igw~~~~~Iwly~iv~~ 97 (214)
-.+..++++++|.....=..+..+++.-|+||..-......+....||
T Consensus 94 ~~w~gl~~l~~q~~~l~rLTf~e~sWDvMEPVTYfv~~~~~i~~y~yf 141 (180)
T PF04678_consen 94 LLWGGLALLVVQFGILARLTFWEYSWDVMEPVTYFVGYGTSILGYAYF 141 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHhHHHHHHHHHHH
Confidence 345556666667666665555555666799986544443333334444
No 30
>PF10329 DUF2417: Region of unknown function (DUF2417); InterPro: IPR019431 This entry represents a family of fungal proteins with no known function. In some cases these proteins also contain an alpha/beta hydrolase fold (IPR000073 from INTERPRO).
Probab=23.43 E-value=5.4e+02 Score=23.02 Aligned_cols=89 Identities=11% Similarity=0.067 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHhhhhheeeeecCCCCcccCChHHHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHHHH
Q 048662 19 LASAVYLQVSSISQAHLFVTHARSWSYVKCPVLFLALAFCVAQLTATLIAVYATWSFATIEGIGWGWAGVIWLYNIIFYI 98 (214)
Q Consensus 19 lqT~~FLqlsis~qa~IFvtRtrg~fw~srPs~~Ll~A~l~a~liaTliAv~g~~~~~~m~~Igw~~~~~Iwly~iv~~l 98 (214)
+.+.|++-+.++....+.---+||..|.+ ..+..-++++.++..+. + ++ | ...--++-+.+..++
T Consensus 48 i~~iw~v~llvS~F~s~Pg~~~Rg~~F~~---~~l~~lsl~~~~~~L~F--f------~v---p-S~~~r~l~~vl~~Ll 112 (232)
T PF10329_consen 48 INFIWWVLLLVSDFFSPPGFNNRGSGFLD---FDLTLLSLITNLFNLWF--F------GV---P-SKLERILNIVLAGLL 112 (232)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCchHH---HHHHHHHHHHHHHHHHh--e------ec---C-cHHHHHHHHHHHHHH
Confidence 44677777788888877777777766631 22222222222222221 1 11 1 233556777788888
Q ss_pred HHHHHHH-HHHHHhhhhhhhhhhhh
Q 048662 99 LLDFIKF-FIRYVLSRNFWDLVIEQ 122 (214)
Q Consensus 99 ~lD~iK~-~ir~~l~~~~~~~~~~~ 122 (214)
.+|.+=. ++++.....+|-.+..-
T Consensus 113 lvdlilil~V~~~R~~eG~vGi~s~ 137 (232)
T PF10329_consen 113 LVDLILILAVPYTRHEEGWVGIASV 137 (232)
T ss_pred HHHHHHHHhhHhHHhHhhHhhHHHH
Confidence 8898887 88888888777665543
No 31
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=22.25 E-value=4e+02 Score=23.92 Aligned_cols=29 Identities=7% Similarity=0.085 Sum_probs=14.7
Q ss_pred cCChHHHHHHHHHHHHHHHHHHHHhcccc
Q 048662 47 KCPVLFLALAFCVAQLTATLIAVYATWSF 75 (214)
Q Consensus 47 srPs~~Ll~A~l~a~liaTliAv~g~~~~ 75 (214)
++++..-.+..++..++...++.+++|+.
T Consensus 113 e~~~~~~~l~~~~~~~~ila~~lFPlWP~ 141 (232)
T TIGR00869 113 NPRPYMDYLIVILVVSIILALVLFPLWPR 141 (232)
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhcccChH
Confidence 34444333334444455555667777754
No 32
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=21.86 E-value=2.6e+02 Score=23.19 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=18.9
Q ss_pred hhhhhHHHHHhhhhHHhhhhhhhcchhhhHh
Q 048662 167 ELSRMAEEAIRRAEIARLRELHTLKGQVESL 197 (214)
Q Consensus 167 ~~~~~~~~a~rr~~~a~l~~~~~l~~~~~~~ 197 (214)
+..++-++|+.+.+-.+-+....++..+...
T Consensus 120 ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~l 150 (184)
T PRK13455 120 SIARRLAAAEDQIASAEAAAVKAVRDRAVSV 150 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666677777765443
No 33
>KOG2987 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=21.26 E-value=1.8e+02 Score=27.10 Aligned_cols=36 Identities=17% Similarity=0.445 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccCchHHHHHHHHHHHHHH
Q 048662 51 LFLALAFCVAQLTATLIAVYATWSFATIEGIGWGWAGVIWLYNIIFY 97 (214)
Q Consensus 51 ~~Ll~A~l~a~liaTliAv~g~~~~~~m~~Igw~~~~~Iwly~iv~~ 97 (214)
++.+.+.++.|+.++-+ +..++|.|+.. |+|.+.-+
T Consensus 44 kwvv~~~Vi~Q~~~~~l----------l~dl~W~~il~-~AYf~gg~ 79 (324)
T KOG2987|consen 44 KWVVLGMVILQILAAYL----------LRDLDWKWILF-IAYFFGGF 79 (324)
T ss_pred HHHHHHHHHHHHHHHHH----------HhcccHHHHHH-HHHHhhhh
Confidence 46666777777666554 56789998876 77776654
No 34
>PF03248 Rer1: Rer1 family; InterPro: IPR004932 RER1 family proteins are involved in involved in the retrieval of some endoplasmic reticulum membrane proteins from the early golgi compartment. The C terminus of yeast Rer1p interacts with a coatomer complex [].; GO: 0016021 integral to membrane
Probab=20.22 E-value=5.6e+02 Score=22.04 Aligned_cols=32 Identities=6% Similarity=0.036 Sum_probs=27.1
Q ss_pred CCCcccCChHHHHHHHHHHHHHHHHHHHHhcc
Q 048662 42 SWSYVKCPVLFLALAFCVAQLTATLIAVYATW 73 (214)
Q Consensus 42 g~fw~srPs~~Ll~A~l~a~liaTliAv~g~~ 73 (214)
++|-...|..-+..+..-+.+++.+..++...
T Consensus 99 rPFiRRlPEFkFW~~~tka~~i~~~~tff~~f 130 (176)
T PF03248_consen 99 RPFIRRLPEFKFWYSCTKATVISLFCTFFPFF 130 (176)
T ss_pred CCccccchhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 57777779999999999999999999888753
Done!