BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 048664
(325 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 233 bits (594), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 184/308 (59%), Gaps = 13/308 (4%)
Query: 25 LQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGN- 83
LQ+GFY SCP AE +V V N +A +RMHFHDCFVRGCDASVLL+ST N
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 84 -PERNAVPNQ-TLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKV 141
E++A+PN +L G F+ I K VE ACP VSCADIL RDS G +++V
Sbjct: 62 TAEKDAIPNNPSLRG--FEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQV 119
Query: 142 PTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSV 201
P+GRRDG VS+ +EA IP+P N T L SFAN+ L ++V LSGAH+IGV+HC+S
Sbjct: 120 PSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSF 179
Query: 202 SSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTL----LEMDPGSRKTFDLSYYN 257
++RLYNF DP L YAA L+ C P ++T + +D + D YY
Sbjct: 180 TNRLYNFNSGSGIDPTLSPSYAALLR-NTC--PANSTRFTPITVSLDIITPSVLDNMYYT 236
Query: 258 LLLKRRGLFVSDASLTTNSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEI 317
+ GL SD +L T + LS + +L + ++FA+++ KMG+ +V TG++GEI
Sbjct: 237 GVQLTLGLLTSDQALVTEA-NLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEI 295
Query: 318 RKRCAFVN 325
R C+ VN
Sbjct: 296 RTNCSVVN 303
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 224 bits (572), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 127/306 (41%), Positives = 184/306 (60%), Gaps = 14/306 (4%)
Query: 25 LQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLN--STG 82
L FY ++CPRAE IV ++V + + LAA LR+HFHDCFV+GCDASVLL+ +TG
Sbjct: 9 LSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATG 68
Query: 83 NPERNAVPNQTLTGATFDFIERVKRLVEDACPG-IVSCADILTLVTRDSIVATGGPSWKV 141
E+ A PN TL + F + ++ +E C G +VSC+DIL L RDS+V +GGP ++V
Sbjct: 69 PGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYRV 128
Query: 142 PTGRRDGR-VSIRAEAQNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTS 200
P GRRD R + + +++P P++N L GLD DLV +SG HTIG++HC+S
Sbjct: 129 PLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCSS 188
Query: 201 VSSRLYNFTGVGDQDPALDSEYAANLKARKCRTP-NDNTTLLEMDPGSRKTFDLSYYNLL 259
RL+ DP + + + LK R C D T+L++ + FD YY L
Sbjct: 189 FEDRLFP-----RPDPTISPTFLSRLK-RTCPAKGTDRRTVLDVR--TPNVFDNKYYIDL 240
Query: 260 LKRRGLFVSDASLTTNSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEIRK 319
+ R GLFVSD L TN+ T +V++ Q S ++FF +F S+ KMG+ +V+T +GE+R+
Sbjct: 241 VNREGLFVSDQDLFTNAITRPIVERFAQ-SQQDFFEQFGVSIGKMGQMRVRTSDQGEVRR 299
Query: 320 RCAFVN 325
C+ N
Sbjct: 300 NCSVRN 305
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 222 bits (565), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/305 (40%), Positives = 180/305 (59%), Gaps = 9/305 (2%)
Query: 24 QLQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGN 83
QL YAKSCP +IV V + +AAS +R+HFHDCFV GCDAS+LL+ +
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDG-AD 59
Query: 84 PERNAVPNQTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPT 143
E+ A+PN + F+ I+ +K VE+ACPG+VSCADILTL RDS+V +GGP W+V
Sbjct: 60 SEKLAIPNIN-SARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVAL 118
Query: 144 GRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSS 203
GR+DG V+ + A NN+P+P + F L++ D+V LSGAHT G + C S+
Sbjct: 119 GRKDGLVANQNSA-NNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSN 177
Query: 204 RLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRR 263
RL+NFTG G+ D L++ +NL+ N N T +D + TFD +Y+ LL+ +
Sbjct: 178 RLFNFTGAGNPDATLETSLLSNLQTVCPLGGNSNIT-APLDRSTTDTFDNNYFKNLLEGK 236
Query: 264 GLFVSDASLTTNSFTLSLVKQLLQG---SLENFFAEFAKSVEKMGRNKVKTGSEGEIRKR 320
GL SD L ++ ++ K+L++ S FF +F ++ +MG + G+ GE+R
Sbjct: 237 GLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMG--NISNGASGEVRTN 294
Query: 321 CAFVN 325
C +N
Sbjct: 295 CRVIN 299
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 221 bits (563), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 176/306 (57%), Gaps = 7/306 (2%)
Query: 24 QLQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGN 83
QL FY+ +CP A IV + + + + + AS +R+HFHDCFV GCDAS+LL+ TG+
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 84 --PERNAVPNQTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKV 141
E+NA PN + F+ ++ +K +E+ACPG+VSC+D+L L + S+ GGPSW V
Sbjct: 62 IQSEKNAGPNVN-SARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTV 120
Query: 142 PTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSV 201
GRRD + A A ++IP+P + + + F+ GL+ DLV LSGAHT G + C
Sbjct: 121 LLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVF 180
Query: 202 SSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLK 261
++RL+NF+G G+ DP L+S + L+ + C +T+ +D + FD +Y+ L
Sbjct: 181 NNRLFNFSGTGNPDPTLNSTLLSTLQ-QLCPQNGSASTITNLDLSTPDAFDNNYFANLQS 239
Query: 262 RRGLFVSDASL--TTNSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEIRK 319
GL SD L TT S T+++V FF FA+S+ MG TGS GEIR
Sbjct: 240 NDGLLQSDQELFSTTGSSTIAIVTSFASNQTL-FFQAFAQSMINMGNISPLTGSNGEIRL 298
Query: 320 RCAFVN 325
C VN
Sbjct: 299 DCKKVN 304
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/308 (40%), Positives = 176/308 (57%), Gaps = 9/308 (2%)
Query: 24 QLQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGN 83
QL FY SCP IV D + + + P +AAS LR+HFHDCFV GCDAS+LL++T +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 84 --PERNAVPNQTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKV 141
E++A N + F I+R+K VE ACP VSCAD+LT+ + S+ GGPSW+V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 142 PTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDL-KDLVLLSGAHTIGVSHCTS 200
P GRRD + A N+PAP L+ SF N GL+ DLV LSG HT G + C S
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRS 180
Query: 201 VSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLL 260
+ RLYNF+ G DP L++ Y L+ C + + L++ D + FD YY L
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRG-LCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 239
Query: 261 KRRGLFVSDASLTTN---SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEI 317
+++GL SD L ++ + T+ LV+ S + FF F +++++MG TG++G+I
Sbjct: 240 EQKGLIQSDQELFSSPNATDTIPLVRS-FANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 318 RKRCAFVN 325
R C VN
Sbjct: 299 RLNCRVVN 306
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 125/308 (40%), Positives = 176/308 (57%), Gaps = 9/308 (2%)
Query: 24 QLQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGN 83
QL FY SCP IV D + + + P +AAS LR+HFHDCFV GCDAS+LL++T +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 84 --PERNAVPNQTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKV 141
E++A N + F I+R+K VE ACP VSCAD+LT+ + S+ GGPSW+V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 142 PTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDL-KDLVLLSGAHTIGVSHCTS 200
P GRRD + A N+PAP L+ SF N GL+ DLV LSG HT G + C
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 201 VSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLL 260
+ RLYNF+ G DP L++ Y L+ C + + L++MD + FD YY L
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRG-LCPLNGNLSALVDMDLRTPTIFDNKYYVNLE 239
Query: 261 KRRGLFVSDASLTTN---SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEI 317
+++GL SD L ++ + T+ LV+ S + FF F +++++MG TG++G+I
Sbjct: 240 EQKGLIQSDQELFSSPNATDTIPLVRS-FANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 318 RKRCAFVN 325
R C VN
Sbjct: 299 RLNCRVVN 306
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 216 bits (551), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 131/307 (42%), Positives = 174/307 (56%), Gaps = 9/307 (2%)
Query: 24 QLQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGN 83
QL FY ++CP IV + P + AS +R+HFHDCFV+GCD SVLLN+T
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 84 --PERNAVPN-QTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWK 140
E++A+PN ++ G D + +K VE++CP VSCADIL + + V GGP W
Sbjct: 61 IESEQDALPNINSIRG--LDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWP 118
Query: 141 VPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTS 200
VP GRRD + R A N+PAP N T L+ SFA QGL+ DLV LSG HT G + C++
Sbjct: 119 VPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCST 178
Query: 201 VSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLL 260
+RLYNF+ G+ DP L++ Y L+AR C L +D + FD YY+ LL
Sbjct: 179 FINRLYNFSNTGNPDPTLNTTYLEVLRAR-CPQNATGDNLTNLDLSTPDQFDNRYYSNLL 237
Query: 261 KRRGLFVSDASL--TTNSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEIR 318
+ GL SD L T + T+ +V + FF+ F S+ KMG V TG EGEIR
Sbjct: 238 QLNGLLQSDQELFSTPGADTIPIVNS-FSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIR 296
Query: 319 KRCAFVN 325
+C FVN
Sbjct: 297 LQCNFVN 303
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 175/308 (56%), Gaps = 9/308 (2%)
Query: 24 QLQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGN 83
QL FY SCP IV D + + + P +AAS LR+HFHDCFV GCDAS+LL++T +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 84 --PERNAVPNQTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKV 141
E++A N + F I+R+K VE ACP VSCAD+LT+ + S+ GGPSW+V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 142 PTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDL-KDLVLLSGAHTIGVSHCTS 200
P GRRD + A N+PAP L+ SF N GL+ DLV LSG HT G + C
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 201 VSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLL 260
+ RLYNF+ G DP L++ Y L+ C + + L++ D + FD YY L
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRG-LCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 239
Query: 261 KRRGLFVSDASLTTN---SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEI 317
+++GL SD L ++ + T+ LV+ S + FF F +++++MG TG++G+I
Sbjct: 240 EQKGLIQSDQELFSSPNATDTIPLVRS-FANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 318 RKRCAFVN 325
R C VN
Sbjct: 299 RLNCRVVN 306
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 175/308 (56%), Gaps = 9/308 (2%)
Query: 24 QLQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGN 83
QL FY SCP IV D + + + P +AAS LR+HFHDCFV GCDAS+LL++T +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 84 --PERNAVPNQTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKV 141
E++A N + F I+R+K VE ACP VSCAD+LT+ + S+ GGPSW+V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 142 PTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDL-KDLVLLSGAHTIGVSHCTS 200
P GRRD + A N+PAP L+ SF N GL+ DLV LSG HT G + C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 201 VSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLL 260
+ RLYNF+ G DP L++ Y L+ C + + L++ D + FD YY L
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRG-LCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 238
Query: 261 KRRGLFVSDASLTTN---SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEI 317
+++GL SD L ++ + T+ LV+ S + FF F +++++MG TG++G+I
Sbjct: 239 EQKGLIQSDQELFSSPNATDTIPLVRS-FANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 318 RKRCAFVN 325
R C VN
Sbjct: 298 RLNCRVVN 305
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 175/308 (56%), Gaps = 9/308 (2%)
Query: 24 QLQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGN 83
QL FY SCP IV D + + + P +AAS LR+HFHDCFV GCDAS+LL++T +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 84 --PERNAVPNQTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKV 141
E++A N + F I+R+K VE ACP VSCAD+LT+ + S+ GGPSW+V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 142 PTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDL-KDLVLLSGAHTIGVSHCTS 200
P GRRD + A N+PAP L+ SF N GL+ DLV LSG HT G + C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 201 VSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLL 260
+ RLYNF+ G DP L++ Y L+ C + + L++ D + FD YY L
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRG-LCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 238
Query: 261 KRRGLFVSDASLTTN---SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEI 317
+++GL SD L ++ + T+ LV+ S + FF F +++++MG TG++G+I
Sbjct: 239 EQKGLIQSDQELFSSPNATDTIPLVRS-FANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 318 RKRCAFVN 325
R C VN
Sbjct: 298 RLNCRVVN 305
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 124/308 (40%), Positives = 175/308 (56%), Gaps = 9/308 (2%)
Query: 24 QLQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGN 83
QL FY SCP IV D + + + P +AAS LR+HFHDCFV GCDAS+LL++T +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 84 --PERNAVPNQTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKV 141
E++A N + F I+R+K VE ACP VSCAD+LT+ + S+ GGPSW+V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 142 PTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDL-KDLVLLSGAHTIGVSHCTS 200
P GRRD + A N+PAP L+ SF N GL+ DLV LSG HT G + C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 201 VSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLL 260
+ RLYNF+ G DP L++ Y L+ C + + L++ D + FD YY L
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRG-LCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 238
Query: 261 KRRGLFVSDASLTTN---SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEI 317
+++GL SD L ++ + T+ LV+ S + FF F +++++MG TG++G+I
Sbjct: 239 EQKGLIQSDQELFSSPNATDTIPLVRS-FANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 318 RKRCAFVN 325
R C VN
Sbjct: 298 RLNCRVVN 305
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 214 bits (545), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 123/308 (39%), Positives = 175/308 (56%), Gaps = 9/308 (2%)
Query: 24 QLQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGN 83
QL FY SCP IV D + + + P +AAS LR+HFHDCFV GCDAS+LL++T +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 84 --PERNAVPNQTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKV 141
E++A N + F I+R+K VE ACP VSCAD+LT+ + S+ GGPSW+V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 142 PTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDL-KDLVLLSGAHTIGVSHCTS 200
P GRRD + A N+PAP L+ SF N GL+ DLV LSG H+ G + C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRF 179
Query: 201 VSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLL 260
+ RLYNF+ G DP L++ Y L+ C + + L++ D + FD YY L
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRG-LCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 238
Query: 261 KRRGLFVSDASLTTN---SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEI 317
+++GL SD L ++ + T+ LV+ S + FF F +++++MG TG++G+I
Sbjct: 239 EQKGLIQSDQELFSSPNATDTIPLVRS-FANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 318 RKRCAFVN 325
R C VN
Sbjct: 298 RLNCRVVN 305
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 214 bits (545), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 123/308 (39%), Positives = 174/308 (56%), Gaps = 9/308 (2%)
Query: 24 QLQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGN 83
QL FY SCP IV D + + + P +AAS LR+HFHDCFV GCDAS+LL++T +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 84 --PERNAVPNQTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKV 141
E++A N + F I+R+K VE ACP VSCAD+LT+ + S+ GGPSW+V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 142 PTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDL-KDLVLLSGAHTIGVSHCTS 200
P GRRD + A N+P P L+ SF N GL+ DLV LSG HT G + C
Sbjct: 121 PLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 201 VSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLL 260
+ RLYNF+ G DP L++ Y L+ C + + L++ D + FD YY L
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRG-LCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 239
Query: 261 KRRGLFVSDASLTTN---SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEI 317
+++GL SD L ++ + T+ LV+ S + FF F +++++MG TG++G+I
Sbjct: 240 EQKGLIQSDQELFSSPNATDTIPLVRS-FANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 318 RKRCAFVN 325
R C VN
Sbjct: 299 RLNCRVVN 306
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 214 bits (544), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 123/308 (39%), Positives = 174/308 (56%), Gaps = 9/308 (2%)
Query: 24 QLQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGN 83
QL FY SCP IV D + + + P +AAS LR+HFHDCFV GCDAS+LL++T +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 84 --PERNAVPNQTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKV 141
E++A N + F I+R+K VE ACP VSCAD+LT+ + S+ GGPSW+V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 142 PTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDL-KDLVLLSGAHTIGVSHCTS 200
P GRRD + A N+P P L+ SF N GL+ DLV LSG HT G + C
Sbjct: 121 PLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 201 VSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLL 260
+ RLYNF+ G DP L++ Y L+ C + + L++ D + FD YY L
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRG-LCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 239
Query: 261 KRRGLFVSDASLTTN---SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEI 317
+++GL SD L ++ + T+ LV+ S + FF F +++++MG TG++G+I
Sbjct: 240 EQKGLIQSDQELFSSPNATDTIPLVRS-FANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 318 RKRCAFVN 325
R C VN
Sbjct: 299 RLNCRVVN 306
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 213 bits (543), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 123/308 (39%), Positives = 174/308 (56%), Gaps = 9/308 (2%)
Query: 24 QLQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGN 83
QL FY SCP IV D + + + P +AAS LR+HFHDCFV GCDAS+LL++T +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 84 --PERNAVPNQTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKV 141
E++A N + F I+R+K VE ACP VSCAD+LT+ + S+ GGPSW+V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 142 PTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDL-KDLVLLSGAHTIGVSHCTS 200
P GRRD + A N+PAP L+ SF N GL+ DLV L G HT G + C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRF 179
Query: 201 VSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLL 260
+ RLYNF+ G DP L++ Y L+ C + + L++ D + FD YY L
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRG-LCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 238
Query: 261 KRRGLFVSDASLTTN---SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEI 317
+++GL SD L ++ + T+ LV+ S + FF F +++++MG TG++G+I
Sbjct: 239 EQKGLIQSDQELFSSPNATDTIPLVRS-FANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 318 RKRCAFVN 325
R C VN
Sbjct: 298 RLNCRVVN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 213 bits (541), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/308 (39%), Positives = 174/308 (56%), Gaps = 9/308 (2%)
Query: 24 QLQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGN 83
QL FY SCP IV D + + + P +AAS LR+HF DCFV GCDAS+LL++T +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 84 --PERNAVPNQTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKV 141
E++A N + F I+R+K VE ACP VSCAD+LT+ + S+ GGPSW+V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 142 PTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDL-KDLVLLSGAHTIGVSHCTS 200
P GRRD + A N+PAP L+ SF N GL+ DLV LSG HT G + C
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 201 VSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLL 260
+ RLYNF+ G DP L++ Y L+ C + + L++ D + FD YY L
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRG-LCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 239
Query: 261 KRRGLFVSDASLTTN---SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEI 317
+++GL SD L ++ + T+ LV+ S + FF F +++++MG TG++G+I
Sbjct: 240 EQKGLIQSDQELFSSPNATDTIPLVRS-FANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 318 RKRCAFVN 325
R C VN
Sbjct: 299 RLNCRVVN 306
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 210 bits (535), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 122/308 (39%), Positives = 173/308 (56%), Gaps = 9/308 (2%)
Query: 24 QLQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGN 83
QL FY SCP IV D + + + P +AAS L +HF DCFV GCDAS+LL++T +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 84 --PERNAVPNQTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKV 141
E++A N + F I+R+K VE ACP VSCAD+LT+ + S+ GGPSW+V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 142 PTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDL-KDLVLLSGAHTIGVSHCTS 200
P GRRD + A N+PAP L+ SF N GL+ DLV LSG HT G + C
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 201 VSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLL 260
+ RLYNF+ G DP L++ Y L+ C + + L++ D + FD YY L
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRG-LCPLNGNLSALVDFDLRTPTIFDNKYYVNLE 238
Query: 261 KRRGLFVSDASLTTN---SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEI 317
+++GL SD L ++ + T+ LV+ S + FF F +++++MG TG++G+I
Sbjct: 239 EQKGLIQSDQELFSSPNATDTIPLVRS-FANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 318 RKRCAFVN 325
R C VN
Sbjct: 298 RLNCRVVN 305
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/300 (40%), Positives = 167/300 (55%), Gaps = 14/300 (4%)
Query: 25 LQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGN- 83
L FYA CP A + VN + + AS LR+HFHDCFV+GCDASVLL+ T N
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 84 -PERNAVPN-QTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKV 141
E+ A PN ++ G F+ I+ +K VE CPG+VSCADIL + RDS+VA GG SW V
Sbjct: 62 TGEKTAGPNANSIRG--FEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNV 119
Query: 142 PTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSV 201
GRRD + + A +++PAP N + L +F+N+G K+LV LSGAHTIG + CT+
Sbjct: 120 LLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAF 179
Query: 202 SSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLK 261
+R+YN + +D YA +L+A C + +T L D + FD +YY L
Sbjct: 180 RTRIYN-------ESNIDPTYAKSLQA-NCPSVGGDTNLSPFDVTTPNKFDNAYYINLRN 231
Query: 262 RRGLFVSDASLTTNSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEIRKRC 321
++GL SD L T S V + F +F ++ KMG TG+ G+IR C
Sbjct: 232 KKGLLHSDQQLFNGVSTDSQVTA-YSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNC 290
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/307 (38%), Positives = 173/307 (56%), Gaps = 7/307 (2%)
Query: 23 AQLQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTG 82
L FYA +CP A +V V + + + AS +R+HFHDCFV GCDAS+LL+++G
Sbjct: 2 GSLNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSG 61
Query: 83 N--PERNAVPNQTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWK 140
+ E+NA PN + F+ ++ +K +E+ACPG+VSC D+L L ++ S+ +GGPSW
Sbjct: 62 SIISEKNAGPNAN-SARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWT 120
Query: 141 VPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTS 200
V GRRD + +A A ++IP+PT + + F+ GL+ DLV LSGAHT G + C
Sbjct: 121 VDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGV 180
Query: 201 VSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLL 260
S+RL+NF+G G+ DP L++ + L+ C + +D + FD +Y+ L
Sbjct: 181 FSNRLFNFSGKGNPDPTLNTTLLSTLQ-ELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQ 239
Query: 261 KRRGLFVSDASL--TTNSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEIR 318
GL SD L TT S T+++V FF FA+S+ MG TGS GEIR
Sbjct: 240 SNNGLLQSDQELFSTTGSATIAIVTSFASNQTL-FFQAFAQSMINMGNISPLTGSSGEIR 298
Query: 319 KRCAFVN 325
C N
Sbjct: 299 LDCKKTN 305
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 32/204 (15%)
Query: 117 VSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIP--APTNNFTLLQRSF 174
V+ AD+ L + +I GGP + GR D + + +P P + L+ F
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 175 ANQGLDLKDLVLLSGAHTIGVSHC--TSVSSRLYNFTGVGDQDPALDSEYAANLKARKCR 232
GL+ K++V LSGAHT+G S + +T G P S A LK
Sbjct: 147 YRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTAQWLK----- 201
Query: 233 TPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRG----LFVSDASLTTNSFTLSLVKQLLQG 288
FD SY+ + +RR + +DA+L + + + +
Sbjct: 202 ------------------FDNSYFKDIKERRDEDLLVLPTDAALFEDP-SFKVYAEKYAA 242
Query: 289 SLENFFAEFAKSVEKMGRNKVKTG 312
E FF ++A++ K+ K G
Sbjct: 243 DPEAFFKDYAEAHAKLSNLGAKFG 266
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 82/211 (38%), Gaps = 47/211 (22%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQN 158
D R+ +++ P IVS AD L ++ TGGP GR D +
Sbjct: 73 LDIAVRLLEPIKEQFP-IVSYADFYQLAGVVAVEITGGPEVPFHPGRED---KPEPPPEG 128
Query: 159 NIPAPTNNFTLLQRSFAN-QGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQDPA 217
+P T L+ F GL +D+V LSG HTIG +H F G +P
Sbjct: 129 RLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPL 183
Query: 218 LDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLL--KRRGL--FVSDASLT 273
+ FD SY+ LL ++ GL SD +L
Sbjct: 184 I--------------------------------FDNSYFTELLTGEKDGLLQLPSDKALL 211
Query: 274 TNSFTLSLVKQLLQGSLENFFAEFAKSVEKM 304
T+S LV++ + FFA++A++ K+
Sbjct: 212 TDSVFRPLVEK-YAADEDVFFADYAEAHLKL 241
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 75/194 (38%), Gaps = 46/194 (23%)
Query: 116 IVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFA 175
I+S AD L ++ TGGP GR D + +P T L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPPEGRLPDATKGSDHLRDVFG 157
Query: 176 N-QGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTP 234
GL +D+V LSG HTIG +H + F G +P +
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAHKEAS-----GFEGPWTSNPLI---------------- 196
Query: 235 NDNTTLLEMDPGSRKTFDLSYYNLLL--KRRGL--FVSDASLTTNSFTLSLVKQLLQGSL 290
FD SY+ LL ++ GL SD +L ++ LV +
Sbjct: 197 ----------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADE- 239
Query: 291 ENFFAEFAKSVEKM 304
+ FFA++A++ +K+
Sbjct: 240 DAFFADYAEAHQKL 253
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 74/194 (38%), Gaps = 46/194 (23%)
Query: 116 IVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFA 175
I+S AD L ++ TGGP GR D + +P T L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPPEGRLPDATKGSDHLRDVFG 157
Query: 176 N-QGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTP 234
GL +D+V LSG HTIG +H F G +P +
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI---------------- 196
Query: 235 NDNTTLLEMDPGSRKTFDLSYYNLLL--KRRGL--FVSDASLTTNSFTLSLVKQLLQGSL 290
FD SY+ LL ++ GL SD +L ++ LV +
Sbjct: 197 ----------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADE- 239
Query: 291 ENFFAEFAKSVEKM 304
+ FFA++A++ +K+
Sbjct: 240 DAFFADYAEAHQKL 253
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 74/194 (38%), Gaps = 46/194 (23%)
Query: 116 IVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFA 175
I+S AD L ++ TGGP GR D + +P T L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPPEGRLPDATKGSDHLRDVFG 157
Query: 176 N-QGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTP 234
GL +D+V LSG HTIG +H F G +P +
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI---------------- 196
Query: 235 NDNTTLLEMDPGSRKTFDLSYYNLLL--KRRGL--FVSDASLTTNSFTLSLVKQLLQGSL 290
FD SY+ LL ++ GL SD +L ++ LV +
Sbjct: 197 ----------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADE- 239
Query: 291 ENFFAEFAKSVEKM 304
+ FFA++A++ +K+
Sbjct: 240 DAFFADYAEAHQKL 253
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 74/194 (38%), Gaps = 46/194 (23%)
Query: 116 IVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFA 175
I+S AD L ++ TGGP GR D + +P T L+ F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPPEGRLPDATKGSDHLRDVFG 145
Query: 176 N-QGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTP 234
GL +D+V LSG HTIG +H F G +P +
Sbjct: 146 KAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI---------------- 184
Query: 235 NDNTTLLEMDPGSRKTFDLSYYNLLL--KRRGL--FVSDASLTTNSFTLSLVKQLLQGSL 290
FD SY+ LL ++ GL SD +L ++ LV +
Sbjct: 185 ----------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADE- 227
Query: 291 ENFFAEFAKSVEKM 304
+ FFA++A++ +K+
Sbjct: 228 DAFFADYAEAHQKL 241
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 74/194 (38%), Gaps = 46/194 (23%)
Query: 116 IVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFA 175
I+S AD L ++ TGGP GR D + +P T L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPPEGRLPDATKGSDHLRDVFG 157
Query: 176 N-QGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTP 234
GL +D+V LSG HTIG +H F G +P +
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI---------------- 196
Query: 235 NDNTTLLEMDPGSRKTFDLSYYNLLL--KRRGL--FVSDASLTTNSFTLSLVKQLLQGSL 290
FD SY+ LL ++ GL SD +L ++ LV +
Sbjct: 197 ----------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADE- 239
Query: 291 ENFFAEFAKSVEKM 304
+ FFA++A++ +K+
Sbjct: 240 DAFFADYAEAHQKL 253
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 74/194 (38%), Gaps = 46/194 (23%)
Query: 116 IVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFA 175
I+S AD L ++ TGGP GR D + +P T L+ F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPPEGRLPDATKGSDHLRDVFG 145
Query: 176 N-QGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTP 234
GL +D+V LSG HTIG +H F G +P +
Sbjct: 146 KAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI---------------- 184
Query: 235 NDNTTLLEMDPGSRKTFDLSYYNLLL--KRRGL--FVSDASLTTNSFTLSLVKQLLQGSL 290
FD SY+ LL ++ GL SD +L ++ LV +
Sbjct: 185 ----------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADE- 227
Query: 291 ENFFAEFAKSVEKM 304
+ FFA++A++ +K+
Sbjct: 228 DAFFADYAEAHQKL 241
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 74/194 (38%), Gaps = 46/194 (23%)
Query: 116 IVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFA 175
I+S AD L ++ TGGP GR D + +P T L+ F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPPEGRLPDATKGSDHLRDVFG 145
Query: 176 N-QGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTP 234
GL +D+V LSG HTIG +H F G +P +
Sbjct: 146 KAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI---------------- 184
Query: 235 NDNTTLLEMDPGSRKTFDLSYYNLLL--KRRGL--FVSDASLTTNSFTLSLVKQLLQGSL 290
FD SY+ LL ++ GL SD +L ++ LV +
Sbjct: 185 ----------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADE- 227
Query: 291 ENFFAEFAKSVEKM 304
+ FFA++A++ +K+
Sbjct: 228 DAFFADYAEAHQKL 241
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 74/194 (38%), Gaps = 46/194 (23%)
Query: 116 IVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFA 175
I+S AD L ++ TGGP GR D + +P T L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPPEGRLPDATKGSDHLRDVFG 157
Query: 176 N-QGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTP 234
GL +D+V LSG HTIG +H F G +P +
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI---------------- 196
Query: 235 NDNTTLLEMDPGSRKTFDLSYYNLLL--KRRGL--FVSDASLTTNSFTLSLVKQLLQGSL 290
FD SY+ LL ++ GL SD +L ++ LV +
Sbjct: 197 ----------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADE- 239
Query: 291 ENFFAEFAKSVEKM 304
+ FFA++A++ +K+
Sbjct: 240 DAFFADYAEAHQKL 253
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 74/194 (38%), Gaps = 46/194 (23%)
Query: 116 IVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFA 175
I+S AD L ++ TGGP GR D + +P T L+ F
Sbjct: 89 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPPEGRLPDATKGSDHLRDVFG 145
Query: 176 N-QGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTP 234
GL +D+V LSG HTIG +H F G +P +
Sbjct: 146 KAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI---------------- 184
Query: 235 NDNTTLLEMDPGSRKTFDLSYYNLLL--KRRGL--FVSDASLTTNSFTLSLVKQLLQGSL 290
FD SY+ LL ++ GL SD +L ++ LV +
Sbjct: 185 ----------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADE- 227
Query: 291 ENFFAEFAKSVEKM 304
+ FFA++A++ +K+
Sbjct: 228 DAFFADYAEAHQKL 241
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 74/194 (38%), Gaps = 46/194 (23%)
Query: 116 IVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFA 175
I+S AD L ++ TGGP GR D + +P T L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPPEGRLPDATKGSDHLRDVFG 157
Query: 176 N-QGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTP 234
GL +D+V LSG HTIG +H F G +P +
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI---------------- 196
Query: 235 NDNTTLLEMDPGSRKTFDLSYYNLLL--KRRGL--FVSDASLTTNSFTLSLVKQLLQGSL 290
FD SY+ LL ++ GL SD +L ++ LV +
Sbjct: 197 ----------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK-YAADE 239
Query: 291 ENFFAEFAKSVEKM 304
+ FFA++A++ +K+
Sbjct: 240 DAFFADYAEAHQKL 253
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 74/194 (38%), Gaps = 46/194 (23%)
Query: 116 IVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFA 175
I+S AD L ++ TGGP GR D + +P T L+ F
Sbjct: 101 ILSYADFYQLAGVVAVEVTGGPEVPFHPGRED---KPEPPPEGRLPDATKGSDHLRDVFG 157
Query: 176 N-QGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTP 234
GL +D+V LSG HTIG +H F G +P +
Sbjct: 158 KAMGLTDQDIVALSGGHTIGAAH-----KERSGFEGPWTSNPLI---------------- 196
Query: 235 NDNTTLLEMDPGSRKTFDLSYYNLLL--KRRGL--FVSDASLTTNSFTLSLVKQLLQGSL 290
FD SY+ LL ++ GL SD +L ++ LV +
Sbjct: 197 ----------------FDNSYFTELLSGEKEGLLQLPSDKALLSDPVFRPLVDK-YAADE 239
Query: 291 ENFFAEFAKSVEKM 304
+ FFA++A++ +K+
Sbjct: 240 DAFFADYAEAHQKL 253
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQN 158
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 89 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 139
Query: 159 N---IPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQD 215
+ +P + ++ F ++ +++V L GAHT+G +H + + G +
Sbjct: 140 DNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKNSG-----YEGPWTAN 194
Query: 216 P-ALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
P D+ + NL + LE + + + +D ++L +D SL
Sbjct: 195 PNVFDNSFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 240
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 241 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 274
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQN 158
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 89 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 139
Query: 159 N---IPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGD-Q 214
+ +P + ++ F ++ +++V L GAHT+G +H + + G D
Sbjct: 140 DNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKNSG-----YEGPWDAT 194
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ D+ + NL + LE + + + +D ++L +D SL
Sbjct: 195 NNVFDNSFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 240
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 241 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 274
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 90/214 (42%), Gaps = 31/214 (14%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 89 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 139
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQD 215
+P + ++ F ++ +++V LSGAHT+G +H + Y + +
Sbjct: 140 DNGRLPDADKDADYVRTFFQRLNMNDREVVALSGAHTLGKTHLKNSG---YEGPWTANNN 196
Query: 216 PALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTTN 275
D+ + NL + LE + + + +D L L +D SL +
Sbjct: 197 -VFDNSFYLNLLNEDWK--------LEKNDANNEQWDSKSGYLQLP------TDYSLIQD 241
Query: 276 SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 242 PKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 274
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 89/234 (38%), Gaps = 34/234 (14%)
Query: 41 VLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGNPERNAV---PNQTLTG- 96
+ D +++ + PSL +R+ +H+ C G+P ++ P G
Sbjct: 16 IEDMISEKLELGPSL----IRLAWHEAASYDC-----FKKDGSPNSASMRFKPECLYAGN 66
Query: 97 ATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA 156
D + ++ P I S AD+ L +I GGP+ GR D +
Sbjct: 67 KGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGP 125
Query: 157 QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQD- 215
+P + + ++ F G + ++ V L GAHT G +H + Y+ D++
Sbjct: 126 DGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETH---IEFSGYHGPWTHDKNG 182
Query: 216 -------PALDSEYAANLKARKCRTPNDNTTLLEM---------DPGSRKTFDL 253
LD ++ N K + + + TT L M DP RK +L
Sbjct: 183 FDNSFFTQLLDEDWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVEL 236
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 91/215 (42%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 89 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 139
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 140 DNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 194
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL N+N L + D + + S Y +L +D SL
Sbjct: 195 NNVFTNEFYLNLL-------NENWKLEKNDANNEQWDSKSGYMML-------PTDYSLIQ 240
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 241 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 274
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 86 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 136
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 137 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 191
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +EY NL + LE + + + +D ++L +D SL
Sbjct: 192 NNVFTNEYYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 237
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 238 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 271
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 89 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 139
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + G G
Sbjct: 140 DNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSG-----YEGPWGAA 194
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL N+N L + D + + S Y +L +D SL
Sbjct: 195 NNVFTNEFYLNLL-------NENWKLEKNDANNEQWDSKSGYMML-------PTDYSLIQ 240
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 241 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 274
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 91/214 (42%), Gaps = 31/214 (14%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQN 158
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 89 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 139
Query: 159 N---IPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQD 215
+ +P + ++ F ++ +++V L GAHT+G +H + Y + +
Sbjct: 140 DNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKNSG---YEGPWTANNN 196
Query: 216 PALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTTN 275
D+ + NL + LE + + + +D ++L +D SL +
Sbjct: 197 -VFDNSFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQD 241
Query: 276 SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 242 PKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 274
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 88/234 (37%), Gaps = 34/234 (14%)
Query: 41 VLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGNPERNAV---PNQTLTG- 96
+ D +++ + PSL +R+ +H+ C G+P ++ P G
Sbjct: 16 IEDMISEKLELGPSL----IRLAWHEAASYDC-----FKKDGSPNSASMRFKPECLYAGN 66
Query: 97 ATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA 156
D + ++ P I S AD+ L +I GGP+ GR D +
Sbjct: 67 KGLDIPRKALETLKKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGP 125
Query: 157 QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQD- 215
+P + + ++ F G + ++ V L GAHT G H + Y+ D++
Sbjct: 126 DGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECH---IEFSGYHGPWTHDKNG 182
Query: 216 -------PALDSEYAANLKARKCRTPNDNTTLLEM---------DPGSRKTFDL 253
LD ++ N K + + + TT L M DP RK +L
Sbjct: 183 FDNSFFTQLLDEDWVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVEL 236
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 81/221 (36%), Gaps = 30/221 (13%)
Query: 54 SLAASFLRMHFHDCFVRGCDASVLLNSTGNPERNAV---PNQTLTG-ATFDFIERVKRLV 109
L S +R+ +H+ C G+P ++ P G D + +
Sbjct: 24 ELGPSLIRLAWHEAASYDC-----FKKDGSPNSASMRFKPECLYAGNKGLDIPRKALETL 78
Query: 110 EDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTL 169
+ P I S AD+ L +I GGP+ GR D + +P + +
Sbjct: 79 KKKYPQI-SYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSH 137
Query: 170 LQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQD--------PALDSE 221
++ F G + ++ V L GAHT G H + Y+ D++ LD +
Sbjct: 138 VREVFRRLGFNDQETVALIGAHTCGECH---IEFSGYHGPWTHDKNGFDNSFFTQLLDED 194
Query: 222 YAANLKARKCRTPNDNTTLLEM---------DPGSRKTFDL 253
+ N K + + + TT L M DP RK +L
Sbjct: 195 WVLNPKVEQMQLMDRATTKLMMLPSDVCLLLDPSYRKYVEL 235
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 91/215 (42%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 91 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 141
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 142 DNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL-----KRSGYEGPWGAA 196
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL N+N L + D + + S Y +L +D SL
Sbjct: 197 NNVFTNEFYLNLL-------NENWKLEKNDANNEQWDSKSGYMML-------PTDYSLIQ 242
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 243 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 276
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 89 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RAGRVDTPEDTTP 139
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 140 DNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 194
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 195 NNCFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 240
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 241 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 274
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 90/214 (42%), Gaps = 31/214 (14%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 91 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 141
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQD 215
+P + ++ F ++ +++V L GAH +G +H + Y G G +
Sbjct: 142 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG---YEGPG-GAAN 197
Query: 216 PALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTTN 275
+E+ NL + LE + + + +D ++L +D SL +
Sbjct: 198 NVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQD 243
Query: 276 SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 244 PKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 276
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 33/214 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 87 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 137
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQD 215
+P + ++ F ++ +++V L GAH +G +H + + G G +
Sbjct: 138 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGGGANN 192
Query: 216 PALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTTN 275
+E+ NL + LE + + + +D ++L +D SL +
Sbjct: 193 -VFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQD 237
Query: 276 SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 238 PKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 270
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 33/214 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 86 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 136
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQD 215
+P + ++ F ++ +++V L GAH +G +H + + G G +
Sbjct: 137 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGGGANN 191
Query: 216 PALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTTN 275
+E+ NL + LE + + + +D ++L +D SL +
Sbjct: 192 -VFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQD 236
Query: 276 SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 237 PKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 269
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 90/214 (42%), Gaps = 31/214 (14%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 89 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 139
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQD 215
+P + ++ F ++ +++V L GAH +G +H + Y G G +
Sbjct: 140 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG---YEGPG-GAAN 195
Query: 216 PALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTTN 275
+E+ NL + LE + + + +D ++L +D SL +
Sbjct: 196 NVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQD 241
Query: 276 SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 242 PKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 274
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 33/214 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 92 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 142
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQD 215
+P + ++ F ++ +++V L GAH +G +H + + G G +
Sbjct: 143 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGGGANN 197
Query: 216 PALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTTN 275
+E+ NL + LE + + + +D ++L +D SL +
Sbjct: 198 -VFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQD 242
Query: 276 SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 243 PKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 275
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 86 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 136
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 137 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALKGAHALGKTHLKNSG-----YEGPWGAA 191
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 192 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 237
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 238 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 271
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 91 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 141
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 142 DNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 196
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 197 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 242
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 243 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 276
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 88 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 138
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 139 DNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 193
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 194 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 239
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 240 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 273
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 90/214 (42%), Gaps = 31/214 (14%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQN 158
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 89 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 139
Query: 159 N---IPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQD 215
+ +P + ++ F ++ +++V L GAHT+G +H + Y + +
Sbjct: 140 DNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKNSG---YEGPWTANNN 196
Query: 216 PALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTTN 275
D+ + NL + LE + + + +D L L +D SL +
Sbjct: 197 -VFDNSFYLNLLNEDWK--------LEKNDANNEQWDSKSGYLQLP------TDYSLIQD 241
Query: 276 SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 242 PKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 274
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 91 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEWQGP--KIPW--RCGRVDTPEDTTP 141
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 142 DNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 196
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 197 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 242
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 243 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 276
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 89 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 139
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 140 DNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 194
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 195 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 240
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 241 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 274
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 89 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 139
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 140 DNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 194
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 195 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 240
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 241 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 274
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 89 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 139
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 140 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 194
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 195 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 240
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 241 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 274
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 89 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 139
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 140 DNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 194
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 195 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 240
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 241 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 274
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 91 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 141
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 142 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPFGAA 196
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 197 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 242
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 243 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 276
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 91 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 141
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 142 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 196
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 197 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 242
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 243 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 276
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 89 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 139
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 140 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 194
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 195 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 240
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 241 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 274
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 86 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 136
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 137 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 191
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 192 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 237
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 238 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 271
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + +S D+ +L ++ GP K+P R GRV +
Sbjct: 82 FKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 132
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 133 DNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL-----KRSGYEGPFGAA 187
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL N++ L + D + + S Y +L +D SL
Sbjct: 188 NNVFTNEFYLNLL-------NEDWKLEKNDANNEQWDSKSGYMML-------PTDYSLIQ 233
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 234 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 267
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 91 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RAGRVDTPEDTTP 141
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 142 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGCA 196
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 197 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 242
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 243 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 276
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 91 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 141
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 142 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 196
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 197 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 242
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 243 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 276
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 92 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 142
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 143 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 197
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 198 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 243
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 244 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 277
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 91 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 141
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 142 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 196
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 197 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 242
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 243 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 276
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 91 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 141
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 142 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 196
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 197 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 242
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 243 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 276
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 91 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 141
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 142 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 196
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 197 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 242
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 243 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 276
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 89/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 86 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 136
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + G G
Sbjct: 137 DNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSG-----YEGPWGAA 191
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 192 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 237
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 238 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 271
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 91 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 141
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 142 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 196
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 197 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYIMLP------TDYSLIQ 242
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 243 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 276
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 89 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 139
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 140 DNGRLPDYDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 194
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 195 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 240
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 241 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 274
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 91 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 141
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 142 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPQGAA 196
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 197 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 242
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 243 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 276
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 91 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 141
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 142 DNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL-----KRSGYEGPWGAA 196
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 197 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 242
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 243 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 276
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 89/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 88 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 138
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + G G
Sbjct: 139 DNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSG-----YEGPFGAA 193
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 194 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 239
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 240 DPKYLSIVKEYANDQ-DRFFKDFSKAFEKLLENGI 273
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 89 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 139
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 140 DNGRLPDMDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 194
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 195 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 240
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 241 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 274
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 88/215 (40%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 86 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 136
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 137 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 191
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + ++ + D S Y +L +D SL
Sbjct: 192 NNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKS------GYMHL--------PTDYSLIQ 237
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 238 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 271
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 31/214 (14%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 89 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 139
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQD 215
+P + ++ F ++ +++V L GAH +G +H + Y G G +
Sbjct: 140 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG---YEGPG-GAAN 195
Query: 216 PALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTTN 275
+E+ NL + LE + + + +D ++L ++ SL +
Sbjct: 196 NVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TNYSLIQD 241
Query: 276 SFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 242 PKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 274
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 92 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 142
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 143 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 197
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L ++ SL
Sbjct: 198 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TEYSLIQ 243
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 244 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 277
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 90/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 91 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 141
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 142 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 196
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L ++ SL
Sbjct: 197 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TNYSLIQ 242
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 243 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 276
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 34.7 bits (78), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 89/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 86 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 136
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 137 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 191
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E NL + LE + + + +D ++L +D SL
Sbjct: 192 NNVFTNEKYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 237
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 238 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 271
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 89/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 89 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 139
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 140 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 194
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E NL + LE + + + +D ++L +D SL
Sbjct: 195 NNVFTNEGYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 240
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 241 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 274
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 89/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 86 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 136
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G + + + G G
Sbjct: 137 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTELKNSG-----YEGPWGAA 191
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 192 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 237
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 238 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 271
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 88/215 (40%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 89 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 139
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + G G
Sbjct: 140 DNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRSG-----YEGPWGAA 194
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L + SL
Sbjct: 195 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TXYSLIQ 240
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 241 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 274
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 89/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 92 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 142
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GAH +G +H + + G G
Sbjct: 143 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLKNSG-----YEGPWGAA 197
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L + SL
Sbjct: 198 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TAYSLIQ 243
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 244 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 277
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 89/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 87 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 137
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GA +G +H + + G G
Sbjct: 138 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTHLKNSG-----YEGPWGAA 192
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 193 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 238
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 239 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 272
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 89/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 86 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 136
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GA +G +H + + G G
Sbjct: 137 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTHLKNSG-----YEGPWGAA 191
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 192 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 237
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 238 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 271
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 89/215 (41%), Gaps = 33/215 (15%)
Query: 99 FDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEA-- 156
F F+E + + P I S D+ +L ++ GP K+P R GRV +
Sbjct: 87 FKFLEPIHK----EFPWI-SSGDLFSLGGVTAVQEMQGP--KIPW--RCGRVDTPEDTTP 137
Query: 157 -QNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTG-VGDQ 214
+P + ++ F ++ +++V L GA +G +H + + G G
Sbjct: 138 DNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTHLKNSG-----YEGPWGAA 192
Query: 215 DPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTT 274
+ +E+ NL + LE + + + +D ++L +D SL
Sbjct: 193 NNVFTNEFYLNLLNEDWK--------LEKNDANNEQWDSKSGYMMLP------TDYSLIQ 238
Query: 275 NSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKV 309
+ LS+VK+ + FF +F+K+ EK+ N +
Sbjct: 239 DPKYLSIVKEYANDQ-DKFFKDFSKAFEKLLENGI 272
>pdb|3MML|B Chain B, Allophanate Hydrolase Complex From Mycobacterium
Smegmatis, Msmeg0435- Msmeg0436
pdb|3MML|D Chain D, Allophanate Hydrolase Complex From Mycobacterium
Smegmatis, Msmeg0435- Msmeg0436
pdb|3MML|F Chain F, Allophanate Hydrolase Complex From Mycobacterium
Smegmatis, Msmeg0435- Msmeg0436
pdb|3MML|H Chain H, Allophanate Hydrolase Complex From Mycobacterium
Smegmatis, Msmeg0435- Msmeg0436
Length = 228
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 116 IVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFA 175
++ DI+ R +V GP ++ PT +R G++ +R EA + P + +
Sbjct: 54 LLGVVDIVP-AARTVLVKLAGPRYQAPTRQRLGKLRVRPEAITH--QPPGDRVDVTIDVV 110
Query: 176 NQGLDLKDLVLLSG 189
G DL ++ L+G
Sbjct: 111 YDGADLHEVASLTG 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,011,136
Number of Sequences: 62578
Number of extensions: 363028
Number of successful extensions: 1240
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 1117
Number of HSP's gapped (non-prelim): 90
length of query: 325
length of database: 14,973,337
effective HSP length: 99
effective length of query: 226
effective length of database: 8,778,115
effective search space: 1983853990
effective search space used: 1983853990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)