Query 048664
Match_columns 325
No_of_seqs 176 out of 1590
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 11:48:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 2E-108 3E-113 784.7 26.5 313 7-325 5-324 (324)
2 cd00693 secretory_peroxidase H 100.0 2E-101 5E-106 733.2 25.8 296 24-324 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 1.4E-72 3.1E-77 519.1 6.5 228 41-289 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 1.1E-69 2.3E-74 511.2 19.3 230 39-321 15-256 (289)
5 cd00691 ascorbate_peroxidase A 100.0 1.7E-66 3.7E-71 484.1 16.3 227 36-310 11-251 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 1.8E-65 3.8E-70 475.9 19.1 231 27-310 3-248 (250)
7 cd00692 ligninase Ligninase an 100.0 1.8E-64 4E-69 483.5 19.2 236 37-325 16-287 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 2.1E-63 4.6E-68 461.3 18.9 227 31-310 3-248 (251)
9 cd00314 plant_peroxidase_like 100.0 3E-59 6.5E-64 436.1 15.2 223 40-306 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 3.2E-56 6.9E-61 433.3 16.9 274 24-315 28-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 6E-53 1.3E-57 433.5 19.1 271 24-312 38-405 (716)
12 PRK15061 catalase/hydroperoxid 100.0 1.1E-49 2.5E-54 407.3 18.5 274 24-315 40-414 (726)
13 cd08201 plant_peroxidase_like_ 100.0 2.1E-50 4.5E-55 374.4 11.0 232 25-306 14-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 9.4E-39 2E-43 300.0 15.2 221 43-308 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 9.7E-34 2.1E-38 291.8 15.0 221 40-309 429-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 3.9E-33 8.5E-38 286.0 16.2 221 43-309 442-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 4.5E-28 9.6E-33 239.1 15.5 250 40-307 71-415 (730)
18 COG0376 KatG Catalase (peroxid 99.3 2.4E-11 5.3E-16 121.3 14.0 216 43-308 452-725 (730)
19 COG3763 Uncharacterized protei 57.8 23 0.0005 27.0 4.5 29 39-67 23-51 (71)
20 PF11895 DUF3415: Domain of un 53.3 12 0.00026 29.2 2.4 19 292-310 2-20 (80)
21 PF15240 Pro-rich: Proline-ric 38.4 17 0.00038 32.5 1.4 16 9-24 2-17 (179)
22 PRK01844 hypothetical protein; 28.2 99 0.0021 23.7 3.8 28 40-67 24-51 (72)
23 PRK00523 hypothetical protein; 25.1 1.2E+02 0.0025 23.3 3.7 28 40-67 25-52 (72)
24 KOG0400 40S ribosomal protein 24.4 52 0.0011 28.2 1.9 33 165-197 31-64 (151)
25 PLN02161 beta-amylase 23.9 1.1E+02 0.0024 31.9 4.5 34 281-319 234-272 (531)
26 PF02419 PsbL: PsbL protein; 22.4 69 0.0015 21.3 1.8 17 5-21 17-33 (37)
27 PRK00753 psbL photosystem II r 21.8 71 0.0015 21.4 1.7 16 6-21 20-35 (39)
28 CHL00038 psbL photosystem II p 21.6 67 0.0015 21.4 1.6 15 6-20 19-33 (38)
29 PTZ00411 transaldolase-like pr 21.4 46 0.001 32.8 1.2 48 134-181 180-230 (333)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.6e-108 Score=784.68 Aligned_cols=313 Identities=45% Similarity=0.808 Sum_probs=289.3
Q ss_pred HHHHHHHHHHhhhc-c-ccccCcCcccCCCchHHHHHHHHHHHHHHhCCCchhhhhHhhhccccccCCCceEEecCCCCC
Q 048664 7 IGVVFLSLFGVVGL-S-EAQLQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNSTGNP 84 (325)
Q Consensus 7 ~~~~~~~~~~~~~~-~-~~~L~~~fY~~sCP~~e~iVr~~v~~~~~~~~~~a~~llRL~FHDcfv~GcDgSill~~~~~~ 84 (325)
+-+|+++++..... + .++|+++||++|||++|+||+++|++++.+||+++|++|||+||||||+||||||||+++ ..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~-~~ 83 (324)
T PLN03030 5 IVILFFLLAMMATTLVQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS-NT 83 (324)
T ss_pred hhHHHHHHHHHhcccchhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC-cc
Confidence 33444444443322 2 367999999999999999999999999999999999999999999999999999999864 34
Q ss_pred ccCCCCCCCCCCcchHHHHHHHHHHHhhCCCCCcHHHHHHhhhhhhhhccCCCCccccCCCcCCCCCchhhhhcCCCCCC
Q 048664 85 ERNAVPNQTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPT 164 (325)
Q Consensus 85 E~~~~~N~~L~g~~~~~Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~ 164 (325)
||++++|.+|+| |++||.||+++|++||++||||||||+||||||+++|||.|+|++||||+++|.+.++. +||.|+
T Consensus 84 Ek~a~~N~~l~G--f~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~ 160 (324)
T PLN03030 84 EKTALPNLLLRG--YDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFT 160 (324)
T ss_pred cccCCCCcCcch--HHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCC
Confidence 999999999999 99999999999999999999999999999999999999999999999999999877764 899999
Q ss_pred CCHHHHHHHHHHcCCCcccceeeecccccccccccccccccccCCCCC-CCCCCCCHHHHHHhhcccCCCCCCCCCcccC
Q 048664 165 NNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVG-DQDPALDSEYAANLKARKCRTPNDNTTLLEM 243 (325)
Q Consensus 165 ~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~~hc~~f~~Rl~~f~~~~-~~dp~ld~~~~~~L~~~~Cp~~~~~~~~~~l 243 (325)
.++++|++.|+++||+.+|||+||||||||++||.+|.+|||||++++ .+||+||+.|+++||+ .||..++....+++
T Consensus 161 ~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~-~Cp~~~~~~~~~~l 239 (324)
T PLN03030 161 DSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQA-LCPQNGDGSRRIAL 239 (324)
T ss_pred CCHHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhc-cCCCCCCCCccccC
Confidence 999999999999999999999999999999999999999999999875 5899999999999999 99964333346789
Q ss_pred CCCCCcccCcHHHHHHhhcccccccccccccChhHHHHHHHHhcCCH----HHHHHHHHHHHHHhhcCCCCCCCCCcccc
Q 048664 244 DPGSRKTFDLSYYNLLLKRRGLFVSDASLTTNSFTLSLVKQLLQGSL----ENFFAEFAKSVEKMGRNKVKTGSEGEIRK 319 (325)
Q Consensus 244 D~~tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~y~A~d~----~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~ 319 (325)
|+.||.+|||+||+||++++|+|+|||+|+.|++|+++|++| |.|+ ++|+++|++||+|||+|+|+||.+|||||
T Consensus 240 D~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~-A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk 318 (324)
T PLN03030 240 DTGSSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRF-LGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRK 318 (324)
T ss_pred CCCCCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHH-hcccccchhhhHHHHHHHHHHHccCCCCCCCCCceec
Confidence 999999999999999999999999999999999999999999 9874 59999999999999999999999999999
Q ss_pred cCccCC
Q 048664 320 RCAFVN 325 (325)
Q Consensus 320 ~C~~~n 325 (325)
+|+++|
T Consensus 319 ~C~~vN 324 (324)
T PLN03030 319 VCSAIN 324 (324)
T ss_pred cccccC
Confidence 999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.4e-101 Score=733.15 Aligned_cols=296 Identities=54% Similarity=0.940 Sum_probs=285.3
Q ss_pred ccCcCcccCCCchHHHHHHHHHHHHHHhCCCchhhhhHhhhccccccCCCceEEecCC-CC-CccCCCCCCCCCCcchHH
Q 048664 24 QLQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNST-GN-PERNAVPNQTLTGATFDF 101 (325)
Q Consensus 24 ~L~~~fY~~sCP~~e~iVr~~v~~~~~~~~~~a~~llRL~FHDcfv~GcDgSill~~~-~~-~E~~~~~N~~L~g~~~~~ 101 (325)
||+++||++|||++|+||+++|++.+.++++++|++|||+||||||+||||||||+++ +. .|+++++|.+|+| |++
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g--~~~ 78 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRG--FDV 78 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcch--hHH
Confidence 6999999999999999999999999999999999999999999999999999999987 43 4999999999999 999
Q ss_pred HHHHHHHHHhhCCCCCcHHHHHHhhhhhhhhccCCCCccccCCCcCCCCCchhhhhcCCCCCCCCHHHHHHHHHHcCCCc
Q 048664 102 IERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDL 181 (325)
Q Consensus 102 Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~ 181 (325)
|+.||+++|+.||++||||||||||||+||+++|||.|+|++||+|++++.+..+ +.||.|+.+++++++.|+++||++
T Consensus 79 i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~ 157 (298)
T cd00693 79 IDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTV 157 (298)
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCH
Confidence 9999999999999999999999999999999999999999999999998877665 789999999999999999999999
Q ss_pred ccceeeecccccccccccccccccccCCCCCCCCCCCCHHHHHHhhcccCCCCCCCCCcccCCCCCCcccCcHHHHHHhh
Q 048664 182 KDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLK 261 (325)
Q Consensus 182 ~dlVaLsGaHTiG~~hc~~f~~Rl~~f~~~~~~dp~ld~~~~~~L~~~~Cp~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~ 261 (325)
+|||||+||||||++||.+|.+|+|||+|++.+||+||+.|+..|+. .||..++.+..+++|+.||.+|||+||++++.
T Consensus 158 ~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~-~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~ 236 (298)
T cd00693 158 TDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRK-KCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLA 236 (298)
T ss_pred HHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcC-CCCCCCCCCccccCCCCCCCccccHHHHHHHh
Confidence 99999999999999999999999999999988999999999999999 99976555567899999999999999999999
Q ss_pred cccccccccccccChhHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCCCCCCCCCcccccCccC
Q 048664 262 RRGLFVSDASLTTNSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEIRKRCAFV 324 (325)
Q Consensus 262 ~~glL~SD~~L~~d~~t~~~V~~y~A~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~~ 324 (325)
++|+|+|||+|+.|++|+++|++| |.||++|+++|++||+||++|+|+||.+||||++|++|
T Consensus 237 ~~glL~SD~~L~~d~~t~~~V~~~-A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 237 GRGLLTSDQALLSDPRTRAIVNRY-AANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred cccCccCCHHhccCccHHHHHHHH-hhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 999999999999999999999999 99999999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.4e-72 Score=519.10 Aligned_cols=228 Identities=46% Similarity=0.816 Sum_probs=209.2
Q ss_pred HHHHHHHHHHhCCCchhhhhHhhhccccc-cCCCceEEecCCCCCccCCCCCCCCC-CcchHHHHHHHHHHHhhCCCCCc
Q 048664 41 VLDYVNKHIHNAPSLAASFLRMHFHDCFV-RGCDASVLLNSTGNPERNAVPNQTLT-GATFDFIERVKRLVEDACPGIVS 118 (325)
Q Consensus 41 Vr~~v~~~~~~~~~~a~~llRL~FHDcfv-~GcDgSill~~~~~~E~~~~~N~~L~-g~~~~~Id~iK~~le~~cp~~VS 118 (325)
||++|++++.++++++|++|||+|||||+ +|||||||+.. .|+++++|.+|+ + +++|+.||+++|++||++||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~~---~e~~~~~N~gl~~~--~~~i~~ik~~~~~~cp~~VS 75 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLFS---AEKDAPPNRGLRDG--FDVIDPIKAKLEAACPGVVS 75 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGST---TGGGSGGGTTHHHH--HHHHHHHHHHHCHHSTTTS-
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceeccc---cccccccccCccee--eechhhHHhhhcccccCCCC
Confidence 89999999999999999999999999999 99999999953 499999999999 7 99999999999999999999
Q ss_pred HHHHHHhhhhhhhhccCCCCccccCCCcCCCCCchhhhhcCCCCCCCCHHHHHHHHHHcCCCcccceeeecccccccccc
Q 048664 119 CADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGAHTIGVSHC 198 (325)
Q Consensus 119 cADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~~hc 198 (325)
|||||+||||+||+.+|||.|+|++||+|++++++.++ .+||.|+.++++|++.|+++|||++|||||+||||||++||
T Consensus 76 ~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c 154 (230)
T PF00141_consen 76 CADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHC 154 (230)
T ss_dssp HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESG
T ss_pred HHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceeccccccccee
Confidence 99999999999999999999999999999999999877 78999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCCCCCCCCCHHHHHHhhcccCCCCCCCCCcccCCCCCCcccCcHHHHHHhhcccccccccccccChhH
Q 048664 199 TSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRGLFVSDASLTTNSFT 278 (325)
Q Consensus 199 ~~f~~Rl~~f~~~~~~dp~ld~~~~~~L~~~~Cp~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~~glL~SD~~L~~d~~t 278 (325)
.+|. |+| + .+||+||+.|+.. .| ..++++ .+++| ||.+|||+||++++.++|+|+||++|+.|++|
T Consensus 155 ~~f~-rl~-~----~~dp~~d~~~~~~----~C-~~~~~~-~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t 220 (230)
T PF00141_consen 155 SSFS-RLY-F----PPDPTMDPGYAGQ----NC-NSGGDN-GVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPET 220 (230)
T ss_dssp GCTG-GTS-C----SSGTTSTHHHHHH----SS-STSGCT-CEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTH
T ss_pred cccc-ccc-c----cccccccccccee----cc-CCCccc-ccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHH
Confidence 9999 999 4 5799999999977 68 433333 77888 99999999999999999999999999999999
Q ss_pred HHHHHHHhcCC
Q 048664 279 LSLVKQLLQGS 289 (325)
Q Consensus 279 ~~~V~~y~A~d 289 (325)
+++|++| |+|
T Consensus 221 ~~~V~~y-A~d 230 (230)
T PF00141_consen 221 RPIVERY-AQD 230 (230)
T ss_dssp HHHHHHH-HHT
T ss_pred HHHHHHH-hcC
Confidence 9999999 865
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.1e-69 Score=511.25 Aligned_cols=230 Identities=27% Similarity=0.377 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHhCCCchhhhhHhhhcccc-------ccCCCceEEecCCCCCccCCCCCCCCC-CcchHHHHHHHHHHH
Q 048664 39 KIVLDYVNKHIHNAPSLAASFLRMHFHDCF-------VRGCDASVLLNSTGNPERNAVPNQTLT-GATFDFIERVKRLVE 110 (325)
Q Consensus 39 ~iVr~~v~~~~~~~~~~a~~llRL~FHDcf-------v~GcDgSill~~~~~~E~~~~~N~~L~-g~~~~~Id~iK~~le 110 (325)
+.+++++ ..+.++|.++|.+|||+||||| ++||||||++.. |+++++|.+|+ + +++|+.||+++
T Consensus 15 ~~~~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~~----E~~~~~N~gL~~g--~~vid~iK~~~- 86 (289)
T PLN02608 15 EKARRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNEE----EYSHGANNGLKIA--IDLCEPVKAKH- 86 (289)
T ss_pred HHHHHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeeccc----ccCCccccchHHH--HHHHHHHHHHc-
Confidence 4566677 4477899999999999999999 899999999954 99999999995 7 99999999987
Q ss_pred hhCCCCCcHHHHHHhhhhhhhhccCCCCccccCCCcCCCCCchhhhhcCCCCCCCCHHHHHHHHHHcCCCcccceeeecc
Q 048664 111 DACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSGA 190 (325)
Q Consensus 111 ~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGa 190 (325)
++|||||||+||||+||+.+|||.|+|++||+|++++++ +++||+|+.+++++++.|+++|||++|||||+||
T Consensus 87 ----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGA 159 (289)
T PLN02608 87 ----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPE---EGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGG 159 (289)
T ss_pred ----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCc---cCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhccc
Confidence 489999999999999999999999999999999999863 4689999999999999999999999999999999
Q ss_pred cccccccccccccccccCCCCCCCCCCCCHHHHHHhhcccCCCCCCCCCcccCCCCCCcccCcHHHHHHhhc--ccc--c
Q 048664 191 HTIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKR--RGL--F 266 (325)
Q Consensus 191 HTiG~~hc~~f~~Rl~~f~~~~~~dp~ld~~~~~~L~~~~Cp~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~--~gl--L 266 (325)
||||++||. |+ +|.| | + ..||.+|||+||++++.+ +|+ |
T Consensus 160 HTiG~ahc~----r~-g~~g-----~--------------------~-------~~Tp~~FDN~Yy~~ll~~~~~gll~L 202 (289)
T PLN02608 160 HTLGRAHPE----RS-GFDG-----P--------------------W-------TKEPLKFDNSYFVELLKGESEGLLKL 202 (289)
T ss_pred ccccccccc----CC-CCCC-----C--------------------C-------CCCCCccChHHHHHHHcCCcCCcccc
Confidence 999999995 54 3322 0 1 168999999999999998 788 7
Q ss_pred ccccccccChhHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCCCCCCCCCcccccC
Q 048664 267 VSDASLTTNSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEIRKRC 321 (325)
Q Consensus 267 ~SD~~L~~d~~t~~~V~~y~A~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C 321 (325)
+|||+|+.|++|+++|++| |.||++|+++|++||+||++|+|+||.+||+.+.-
T Consensus 203 ~SD~~L~~d~~T~~~V~~f-A~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~ 256 (289)
T PLN02608 203 PTDKALLEDPEFRPYVELY-AKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKST 256 (289)
T ss_pred ccCHhhhcChhHHHHHHHH-hhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccC
Confidence 9999999999999999999 99999999999999999999999999999998754
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.7e-66 Score=484.11 Aligned_cols=227 Identities=24% Similarity=0.355 Sum_probs=205.7
Q ss_pred hHHHHHHHHHHHHHHhCCCchhhhhHhhhccccccCCCceEEecCC-C----CCccCCCCCCCC-CCcchHHHHHHHHHH
Q 048664 36 RAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFVRGCDASVLLNST-G----NPERNAVPNQTL-TGATFDFIERVKRLV 109 (325)
Q Consensus 36 ~~e~iVr~~v~~~~~~~~~~a~~llRL~FHDcfv~GcDgSill~~~-~----~~E~~~~~N~~L-~g~~~~~Id~iK~~l 109 (325)
..++||+++|++.+. +++++|++|||+|||||+ ||+|+++++. + .+|+++++|.+| ++ |++|++||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~--~~~i~~iK~~~ 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIA--RKLLEPIKKKY 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHH--HHHHHHHHHHc
Confidence 457899999999999 999999999999999994 7777766433 1 139999999999 78 99999999987
Q ss_pred HhhCCCCCcHHHHHHhhhhhhhhccCCCCccccCCCcCCCCCchhhhhcCCCCCCCCHHHHHHHHHHcCCCcccceeeec
Q 048664 110 EDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLDLKDLVLLSG 189 (325)
Q Consensus 110 e~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG 189 (325)
++||||||||||||+||+.+|||.|+|++||+|+.++....++++||.|+.+++++++.|+++|||++|||||+|
T Consensus 86 -----~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsG 160 (253)
T cd00691 86 -----PDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSG 160 (253)
T ss_pred -----CCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcc
Confidence 489999999999999999999999999999999999987777789999999999999999999999999999999
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCHHHHHHhhcccCCCCCCCCCcccCCCCCCcccCcHHHHHHhhccc-----
Q 048664 190 AHTIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRRG----- 264 (325)
Q Consensus 190 aHTiG~~hc~~f~~Rl~~f~~~~~~dp~ld~~~~~~L~~~~Cp~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~~g----- 264 (325)
|||||++||.. ++|.| .+ ..||.+|||+||++|+.++|
T Consensus 161 aHTiG~a~c~~-----~~~~g-------------------------~~-------~~tp~~FDn~Yy~~ll~~~g~~~~~ 203 (253)
T cd00691 161 AHTLGRCHKER-----SGYDG-------------------------PW-------TKNPLKFDNSYFKELLEEDWKLPTP 203 (253)
T ss_pred cceeecccccC-----CCCCC-------------------------CC-------CCCCCcccHHHHHHHhcCCCccCcC
Confidence 99999999953 23322 01 15899999999999999999
Q ss_pred ---ccccccccccChhHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCCCC
Q 048664 265 ---LFVSDASLTTNSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVK 310 (325)
Q Consensus 265 ---lL~SD~~L~~d~~t~~~V~~y~A~d~~~F~~~Fa~Am~Km~~lgv~ 310 (325)
+|+||++|+.|++|+++|++| |.|+++|+++|++||+||+++||.
T Consensus 204 ~~~~L~sD~~L~~d~~t~~~v~~~-a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 204 GLLMLPTDKALLEDPKFRPYVELY-AKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred cceechhhHHHHcCccHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999 999999999999999999999986
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.8e-65 Score=475.86 Aligned_cols=231 Identities=27% Similarity=0.408 Sum_probs=208.0
Q ss_pred cCcccCC--CchHHHHHHHHHHHHHHhCCCchhhhhHhhhc-----ccccc--CCCceEEecCCCCCccCCCCCCCC-CC
Q 048664 27 LGFYAKS--CPRAEKIVLDYVNKHIHNAPSLAASFLRMHFH-----DCFVR--GCDASVLLNSTGNPERNAVPNQTL-TG 96 (325)
Q Consensus 27 ~~fY~~s--CP~~e~iVr~~v~~~~~~~~~~a~~llRL~FH-----Dcfv~--GcDgSill~~~~~~E~~~~~N~~L-~g 96 (325)
.+||..+ |+.+++.++..+++.+ .+++++|.+|||+|| ||+++ ||||||..+. |+++++|.+| ++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~~----E~~~~~N~gl~~~ 77 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFDA----EQAHGANSGIHIA 77 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccccc----cccCCCccCHHHH
Confidence 3567644 8899999999999977 889999999999999 88876 9999996643 9999999999 68
Q ss_pred cchHHHHHHHHHHHhhCCCCCcHHHHHHhhhhhhhhccCCCCccccCCCcCCCCCchhhhhcCCCCCCCCHHHHHHHHHH
Q 048664 97 ATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFAN 176 (325)
Q Consensus 97 ~~~~~Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~ 176 (325)
|++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|++++++ ++.||.|+.++++|++.|++
T Consensus 78 --~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F~~ 147 (250)
T PLN02364 78 --LRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVFAK 147 (250)
T ss_pred --HHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHHHH
Confidence 99999999998 589999999999999999999999999999999999865 46899999999999999997
Q ss_pred -cCCCcccceeeecccccccccccccccccccCCCCCCCCCCCCHHHHHHhhcccCCCCCCCCCcccCCCCCCcccCcHH
Q 048664 177 -QGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSY 255 (325)
Q Consensus 177 -~Gl~~~dlVaLsGaHTiG~~hc~~f~~Rl~~f~~~~~~dp~ld~~~~~~L~~~~Cp~~~~~~~~~~lD~~tp~~FDn~Y 255 (325)
+|||++|||||+||||||++|| .|+ +|.| .+ ..||.+|||+|
T Consensus 148 ~~Gl~~~d~VaLsGaHTiG~~hc----~r~-~~~g-------------------------~~-------~~tp~~fDn~Y 190 (250)
T PLN02364 148 QMGLSDKDIVALSGAHTLGRCHK----DRS-GFEG-------------------------AW-------TSNPLIFDNSY 190 (250)
T ss_pred hcCCCHHHheeeecceeeccccC----CCC-CCCC-------------------------CC-------CCCCCccchHH
Confidence 5999999999999999999999 344 3321 01 16899999999
Q ss_pred HHHHhhc--ccccc--cccccccChhHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCCCC
Q 048664 256 YNLLLKR--RGLFV--SDASLTTNSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVK 310 (325)
Q Consensus 256 y~~l~~~--~glL~--SD~~L~~d~~t~~~V~~y~A~d~~~F~~~Fa~Am~Km~~lgv~ 310 (325)
|++|+.+ +|+|. |||+|+.|++|+.+|++| |.||++|+++|++||+||++||+-
T Consensus 191 y~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~-a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 191 FKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKY-AADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HHHHhcCCcCCCccccchHHHccCchHHHHHHHH-hhCHHHHHHHHHHHHHHHHccCCC
Confidence 9999998 89865 999999999999999999 999999999999999999999973
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.8e-64 Score=483.47 Aligned_cols=236 Identities=22% Similarity=0.313 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHHHhCC---CchhhhhHhhhccccc------------cCCCceEEecCCCCCccCCCCCCCCCCcchHH
Q 048664 37 AEKIVLDYVNKHIHNAP---SLAASFLRMHFHDCFV------------RGCDASVLLNSTGNPERNAVPNQTLTGATFDF 101 (325)
Q Consensus 37 ~e~iVr~~v~~~~~~~~---~~a~~llRL~FHDcfv------------~GcDgSill~~~~~~E~~~~~N~~L~g~~~~~ 101 (325)
+|..|+++|++.+..+. ..|+.+|||+|||||+ +|||||||++. ..|+++++|.||+ ++
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~--~~E~~~~~N~gL~----~v 89 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFD--DIETAFHANIGLD----EI 89 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCC--cccccCCCCCCHH----HH
Confidence 57899999999998554 4677799999999996 89999999974 2499999999887 68
Q ss_pred HHHHHHHHHhhCCCCCcHHHHHHhhhhhhhhc-cCCCCccccCCCcCCCCCchhhhhcCCCCCCCCHHHHHHHHHHcCCC
Q 048664 102 IERVKRLVEDACPGIVSCADILTLVTRDSIVA-TGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFANQGLD 180 (325)
Q Consensus 102 Id~iK~~le~~cp~~VScADilalAar~av~~-~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~ 180 (325)
|+.||..+|+.| ||||||||||||+||+. .|||.|+|++||+|++++.+ ++.||.|+.++++|++.|+++||+
T Consensus 90 vd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~---~g~LP~p~~sv~~l~~~F~~~Gf~ 163 (328)
T cd00692 90 VEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAP---DGLVPEPFDSVDKILARFADAGFS 163 (328)
T ss_pred HHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCC
Confidence 999999999998 99999999999999995 69999999999999999864 568999999999999999999999
Q ss_pred cccceeeecccccccccccccccccccCCCCCCCCCCCCHHHHHHhhcccCCCCCCCCCcccCCCCCCcccCcHHHHHHh
Q 048664 181 LKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLL 260 (325)
Q Consensus 181 ~~dlVaLsGaHTiG~~hc~~f~~Rl~~f~~~~~~dp~ld~~~~~~L~~~~Cp~~~~~~~~~~lD~~tp~~FDn~Yy~~l~ 260 (325)
++|||+|+||||||++|. +||+++ ..++| .||.+|||+||+|++
T Consensus 164 ~~E~VaLsGAHTiG~a~~---------------~Dps~~--------------------g~p~D-~TP~~FDn~Yf~~ll 207 (328)
T cd00692 164 PDELVALLAAHSVAAQDF---------------VDPSIA--------------------GTPFD-STPGVFDTQFFIETL 207 (328)
T ss_pred HHHHhhhcccccccccCC---------------CCCCCC--------------------CCCCC-CCcchhcHHHHHHHH
Confidence 999999999999999982 356554 13577 599999999999987
Q ss_pred -hccc-------------------ccccccccccChhHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCCCCCCCCCccccc
Q 048664 261 -KRRG-------------------LFVSDASLTTNSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVKTGSEGEIRKR 320 (325)
Q Consensus 261 -~~~g-------------------lL~SD~~L~~d~~t~~~V~~y~A~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~ 320 (325)
++++ +|+||++|+.|++|+.+|++| |+||++|+++|++||+||++|||. ...+.+
T Consensus 208 ~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~f-a~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~d 282 (328)
T cd00692 208 LKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSF-VNNQAKMNAAFAAAMLKLSLLGQD----NISLTD 282 (328)
T ss_pred HcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHH-hcCHHHHHHHHHHHHHHHHcCCCC----cchhcc
Confidence 4555 499999999999999999999 999999999999999999999986 337889
Q ss_pred CccCC
Q 048664 321 CAFVN 325 (325)
Q Consensus 321 C~~~n 325 (325)
|+.|+
T Consensus 283 cs~v~ 287 (328)
T cd00692 283 CSDVI 287 (328)
T ss_pred CcccC
Confidence 99875
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=2.1e-63 Score=461.32 Aligned_cols=227 Identities=26% Similarity=0.387 Sum_probs=201.9
Q ss_pred cCCCch-------HHHHHHHHHHHHHHhCCCchhhhhHhhhccccc-------cCCCceEEecCCCCCccCCCCCCCCC-
Q 048664 31 AKSCPR-------AEKIVLDYVNKHIHNAPSLAASFLRMHFHDCFV-------RGCDASVLLNSTGNPERNAVPNQTLT- 95 (325)
Q Consensus 31 ~~sCP~-------~e~iVr~~v~~~~~~~~~~a~~llRL~FHDcfv-------~GcDgSill~~~~~~E~~~~~N~~L~- 95 (325)
++.||. ..+-++..+.+.+ ++...+|.+|||+||||.+ +||||||.+.. |+++++|.||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~~----E~~~~~N~gL~~ 77 (251)
T PLN02879 3 KKSYPEVKEEYKKAVQRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHPQ----ELAHDANNGLDI 77 (251)
T ss_pred cccCCCccHHHHHHHHHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecChh----hccCCCcCChHH
Confidence 467773 3344577777766 5578999999999999974 89999999753 99999999998
Q ss_pred CcchHHHHHHHHHHHhhCCCCCcHHHHHHhhhhhhhhccCCCCccccCCCcCCCCCchhhhhcCCCCCCCCHHHHHHHHH
Q 048664 96 GATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFA 175 (325)
Q Consensus 96 g~~~~~Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~ 175 (325)
+ +++|+.||+++ ++|||||||+||+|+||+.+|||.|+|++||+|+.++++ +++||.|+.++++|++.|+
T Consensus 78 ~--~~~i~~iK~~~-----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~---~~~lP~p~~~~~~l~~~F~ 147 (251)
T PLN02879 78 A--VRLLDPIKELF-----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPP---EGRLPQATKGVDHLRDVFG 147 (251)
T ss_pred H--HHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHH
Confidence 6 99999999998 589999999999999999999999999999999998854 5689999999999999999
Q ss_pred HcCCCcccceeeecccccccccccccccccccCCCCCCCCCCCCHHHHHHhhcccCCCCCCCCCcccCCCCCCcccCcHH
Q 048664 176 NQGLDLKDLVLLSGAHTIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSY 255 (325)
Q Consensus 176 ~~Gl~~~dlVaLsGaHTiG~~hc~~f~~Rl~~f~~~~~~dp~ld~~~~~~L~~~~Cp~~~~~~~~~~lD~~tp~~FDn~Y 255 (325)
++|||++||||||||||||++||. | ++|.| . +| .||.+|||+|
T Consensus 148 ~~Gl~~~dlVALsGaHTiG~ah~~----r-~g~~g-------------------------~------~d-~tp~~FDN~Y 190 (251)
T PLN02879 148 RMGLNDKDIVALSGGHTLGRCHKE----R-SGFEG-------------------------A------WT-PNPLIFDNSY 190 (251)
T ss_pred HcCCCHHHHeeeeccccccccccc----c-ccCCC-------------------------C------CC-CCccceeHHH
Confidence 999999999999999999999995 3 33322 1 22 5899999999
Q ss_pred HHHHhhc--ccc--cccccccccChhHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCCCC
Q 048664 256 YNLLLKR--RGL--FVSDASLTTNSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRNKVK 310 (325)
Q Consensus 256 y~~l~~~--~gl--L~SD~~L~~d~~t~~~V~~y~A~d~~~F~~~Fa~Am~Km~~lgv~ 310 (325)
|++|+.+ +|+ |+||++|+.|++|+++|++| |.||++||++|++||+||++||+.
T Consensus 191 y~~ll~~~~~gll~L~SD~aL~~D~~t~~~V~~~-A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 191 FKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKY-AADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred HHHHHcCCcCCCccchhhHHHhcCCcHHHHHHHH-hhCHHHHHHHHHHHHHHHHccCCC
Confidence 9999999 888 67999999999999999999 999999999999999999999975
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=3e-59 Score=436.12 Aligned_cols=223 Identities=31% Similarity=0.419 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHhCCCchhhhhHhhhcccccc--------CCCceEEecCCCCCccCCCCCCCC-CCcchHHHHHHHHHHH
Q 048664 40 IVLDYVNKHIHNAPSLAASFLRMHFHDCFVR--------GCDASVLLNSTGNPERNAVPNQTL-TGATFDFIERVKRLVE 110 (325)
Q Consensus 40 iVr~~v~~~~~~~~~~a~~llRL~FHDcfv~--------GcDgSill~~~~~~E~~~~~N~~L-~g~~~~~Id~iK~~le 110 (325)
.|++.|++.+.+++.+++++|||+|||||+. ||||||+++. |+++++|.+| ++ +++|+.||+++|
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~----e~~~~~N~~l~~~--~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEP----ELDRPENGGLDKA--LRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccc----cccCcccccHHHH--HHHHHHHHHHcC
Confidence 5889999999999999999999999999996 9999999975 9999999986 67 999999999999
Q ss_pred hhCCCCCcHHHHHHhhhhhhhhcc--CCCCccccCCCcCCCCCc--hhhhhcCCCCCCCCHHHHHHHHHHcCCCccccee
Q 048664 111 DACPGIVSCADILTLVTRDSIVAT--GGPSWKVPTGRRDGRVSI--RAEAQNNIPAPTNNFTLLQRSFANQGLDLKDLVL 186 (325)
Q Consensus 111 ~~cp~~VScADilalAar~av~~~--GGP~~~v~~GR~D~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVa 186 (325)
. |++|||||||++|+++||+.+ |||.|+|++||+|++.+. ...+...+|.|..+++++++.|+++||+++||||
T Consensus 76 ~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VA 153 (255)
T cd00314 76 G--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVA 153 (255)
T ss_pred C--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHh
Confidence 8 899999999999999999999 999999999999999764 3344567888888999999999999999999999
Q ss_pred ee-ccccc-ccccccccccccccCCCCCCCCCCCCHHHHHHhhcccCCCCCCCCCcccCCCCCCcccCcHHHHHHhhcc-
Q 048664 187 LS-GAHTI-GVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSYYNLLLKRR- 263 (325)
Q Consensus 187 Ls-GaHTi-G~~hc~~f~~Rl~~f~~~~~~dp~ld~~~~~~L~~~~Cp~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~~- 263 (325)
|+ ||||| |++||..|..|+ |+ +|+.||.+|||+||++++.++
T Consensus 154 L~~GaHti~G~~~~~~~~~~~-------------------------~~----------~~~~tp~~fDN~yy~~l~~~~~ 198 (255)
T cd00314 154 LSAGAHTLGGKNHGDLLNYEG-------------------------SG----------LWTSTPFTFDNAYFKNLLDMNW 198 (255)
T ss_pred hccCCeeccCcccCCCCCccc-------------------------CC----------CCCCCCCccchHHHHHHhcCCc
Confidence 99 99999 999998776554 11 344799999999999999988
Q ss_pred ---------------cccccccccccChhHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 048664 264 ---------------GLFVSDASLTTNSFTLSLVKQLLQGSLENFFAEFAKSVEKMGR 306 (325)
Q Consensus 264 ---------------glL~SD~~L~~d~~t~~~V~~y~A~d~~~F~~~Fa~Am~Km~~ 306 (325)
++|+||++|+.|++|+.+|++| |.|+++|+++|++||+||++
T Consensus 199 ~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~y-a~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 199 EWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERY-ASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred ccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHH-HhCHHHHHHHHHHHHHHHcC
Confidence 8999999999999999999999 99999999999999999985
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=3.2e-56 Score=433.29 Aligned_cols=274 Identities=17% Similarity=0.231 Sum_probs=236.5
Q ss_pred ccCcCc-ccCCCchH-HHHHHHHHHHHHHhC--------CCchhhhhHhhhccccc-------cCCC-ceEEecCCCCCc
Q 048664 24 QLQLGF-YAKSCPRA-EKIVLDYVNKHIHNA--------PSLAASFLRMHFHDCFV-------RGCD-ASVLLNSTGNPE 85 (325)
Q Consensus 24 ~L~~~f-Y~~sCP~~-e~iVr~~v~~~~~~~--------~~~a~~llRL~FHDcfv-------~GcD-gSill~~~~~~E 85 (325)
.+-.+| |.+.+-.+ .+.|+++|++.+... ...+|.+|||+|||+.+ +|++ |+|.+.. |
T Consensus 28 p~~~~~~~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~p----e 103 (409)
T cd00649 28 PMGEDFNYAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAP----L 103 (409)
T ss_pred CCCCCCCHHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCcccccc----c
Confidence 344555 55555444 368999999998864 37999999999999986 7997 8999875 9
Q ss_pred cCCCCCCCCCCcchHHHHHHHHHHHhhCCCCCcHHHHHHhhhhhhhhccCCCCccccCCCcCCCCCchh-----------
Q 048664 86 RNAVPNQTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRA----------- 154 (325)
Q Consensus 86 ~~~~~N~~L~g~~~~~Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~----------- 154 (325)
++++.|.+|.. +..+++.||+++ |..||+||+|+||+.+|||.+|||.|++.+||.|...+...
T Consensus 104 ~~~~~N~gL~~-a~~~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~ 178 (409)
T cd00649 104 NSWPDNVNLDK-ARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLA 178 (409)
T ss_pred cCcHhhhhHHH-HHHHHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhccc
Confidence 99999999975 589999999988 34799999999999999999999999999999999764320
Q ss_pred ------------------------hhhc--CCCCCCCCHHHHHHHHHHcCCCcccceee-eccccccccccccccccccc
Q 048664 155 ------------------------EAQN--NIPAPTNNFTLLQRSFANQGLDLKDLVLL-SGAHTIGVSHCTSVSSRLYN 207 (325)
Q Consensus 155 ------------------------~~~~--~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL-sGaHTiG~~hc~~f~~Rl~~ 207 (325)
.+++ .||+|..++++|++.|++||||++||||| +||||||++||.+|.+||.
T Consensus 179 ~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg- 257 (409)
T cd00649 179 DKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG- 257 (409)
T ss_pred ccccccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC-
Confidence 0122 69999999999999999999999999999 5999999999999999983
Q ss_pred CCCCCCCCCCCCHHHHHHhh--cccCCCCC-CCCCcccCC---CCCCcccCcHHHHHHhh--------------------
Q 048664 208 FTGVGDQDPALDSEYAANLK--ARKCRTPN-DNTTLLEMD---PGSRKTFDLSYYNLLLK-------------------- 261 (325)
Q Consensus 208 f~~~~~~dp~ld~~~~~~L~--~~~Cp~~~-~~~~~~~lD---~~tp~~FDn~Yy~~l~~-------------------- 261 (325)
+||.+++.|++.|+ . .||... .++..+.+| +.||.+|||+||++|++
T Consensus 258 ------~dP~~~~~~~~gLgw~~-~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~ 330 (409)
T cd00649 258 ------PEPEAAPIEQQGLGWKN-SYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNA 330 (409)
T ss_pred ------CCCCcCHHHHHhhcccc-cCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCc
Confidence 59999999999996 6 999643 233456788 58999999999999998
Q ss_pred ----------------cccccccccccccChhHHHHHHHHhcCCHHHHHHHHHHHHHHh--hcCCCCCCCCC
Q 048664 262 ----------------RRGLFVSDASLTTNSFTLSLVKQLLQGSLENFFAEFAKSVEKM--GRNKVKTGSEG 315 (325)
Q Consensus 262 ----------------~~glL~SD~~L~~d~~t~~~V~~y~A~d~~~F~~~Fa~Am~Km--~~lgv~tg~~G 315 (325)
+.|||+||++|+.|++++++|++| |.|+++||++|++||+|| +++|+++-..|
T Consensus 331 ~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~y-A~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 331 AGENTVPDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRF-LENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred cccccCCCccccccccCcccchhhHhhhcCccHHHHHHHH-hcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 568999999999999999999999 999999999999999999 69999986555
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=6e-53 Score=433.50 Aligned_cols=271 Identities=18% Similarity=0.228 Sum_probs=231.2
Q ss_pred ccCcCc-ccCCCchH-HHHHHHHHHHHHHhC--------CCchhhhhHhhhccccc-------cCC-CceEEecCCCCCc
Q 048664 24 QLQLGF-YAKSCPRA-EKIVLDYVNKHIHNA--------PSLAASFLRMHFHDCFV-------RGC-DASVLLNSTGNPE 85 (325)
Q Consensus 24 ~L~~~f-Y~~sCP~~-e~iVr~~v~~~~~~~--------~~~a~~llRL~FHDcfv-------~Gc-DgSill~~~~~~E 85 (325)
.+-.+| |.+-+-.. .+.|+++|++.+... ...+|-+|||+||++.+ ||| .|+|.+.. |
T Consensus 38 p~~~~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P----~ 113 (716)
T TIGR00198 38 PMGEDFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAP----L 113 (716)
T ss_pred CCCCCccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceeccc----c
Confidence 355555 66555443 356899999998864 37999999999999986 798 58998875 9
Q ss_pred cCCCCCCCCCCcchHHHHHHHHHHHhhCCCCCcHHHHHHhhhhhhhhccCCCCccccCCCcCCCCCch------------
Q 048664 86 RNAVPNQTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIR------------ 153 (325)
Q Consensus 86 ~~~~~N~~L~g~~~~~Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~------------ 153 (325)
++++.|.+|.. +..+++.||++ ||++|||||||+||+++||+.+|||.|+|.+||+|+..+..
T Consensus 114 ~sw~~N~~Ldk-a~~lL~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~ 188 (716)
T TIGR00198 114 NSWPDNVNLDK-ARRLLWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLT 188 (716)
T ss_pred cCchhhhhHHH-HHHHHHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhh
Confidence 99999999975 58899998874 78899999999999999999999999999999999953320
Q ss_pred --------------h----------hhhcCCCCCCCCHHHHHHHHHHcCCCcccceeee-cccccccccccccccccccC
Q 048664 154 --------------A----------EAQNNIPAPTNNFTLLQRSFANQGLDLKDLVLLS-GAHTIGVSHCTSVSSRLYNF 208 (325)
Q Consensus 154 --------------~----------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~~hc~~f~~Rl~~f 208 (325)
. +....+|.|..++++|++.|++||||++|||||+ ||||||++||.+|.+||
T Consensus 189 ~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl--- 265 (716)
T TIGR00198 189 SSREDRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI--- 265 (716)
T ss_pred ccccccccccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC---
Confidence 0 1112699999999999999999999999999995 99999999999999998
Q ss_pred CCCCCCCCCCCHHHHHHhhcccCCCCC---CCCCcccCC---CCCCcccCcHHHHHHhhc--------------------
Q 048664 209 TGVGDQDPALDSEYAANLKARKCRTPN---DNTTLLEMD---PGSRKTFDLSYYNLLLKR-------------------- 262 (325)
Q Consensus 209 ~~~~~~dp~ld~~~~~~L~~~~Cp~~~---~~~~~~~lD---~~tp~~FDn~Yy~~l~~~-------------------- 262 (325)
++||++++.|++.|+. .||... .++..+.+| +.||.+|||+||+||+..
T Consensus 266 ----g~dP~~~~~~~~gLg~-~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~ 340 (716)
T TIGR00198 266 ----GPDPEGAPIEEQGLGW-HNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAP 340 (716)
T ss_pred ----CCCCCcCHHHHHHhcc-cCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccc
Confidence 2799999999999998 998532 233356777 679999999999999974
Q ss_pred --------------ccccccccccccChhHHHHHHHHhcCCHHHHHHHHHHHHHHhh--cCCCCCC
Q 048664 263 --------------RGLFVSDASLTTNSFTLSLVKQLLQGSLENFFAEFAKSVEKMG--RNKVKTG 312 (325)
Q Consensus 263 --------------~glL~SD~~L~~d~~t~~~V~~y~A~d~~~F~~~Fa~Am~Km~--~lgv~tg 312 (325)
.++|+||++|..|++++++|+.| |.|++.|+++|++||+||+ .+|++.-
T Consensus 341 ~~~p~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~y-A~d~~~F~~dFA~Aw~KL~~~d~gp~~~ 405 (716)
T TIGR00198 341 EIIPDVEDPNKKHNPIMLDADLALRFDPEFRKISRRF-LREPDYFAEAFAKAWFKLTHRDMGPKSR 405 (716)
T ss_pred cccccccccccccccCccchhHHhccCccHHHHHHHH-hcCHHHHHHHHHHHHHHHcccccCchhh
Confidence 68999999999999999999999 9999999999999999998 5676543
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.1e-49 Score=407.31 Aligned_cols=274 Identities=18% Similarity=0.241 Sum_probs=232.6
Q ss_pred ccCcCc-ccCCCchH-HHHHHHHHHHHHHhC--------CCchhhhhHhhhccccc-------cCCC-ceEEecCCCCCc
Q 048664 24 QLQLGF-YAKSCPRA-EKIVLDYVNKHIHNA--------PSLAASFLRMHFHDCFV-------RGCD-ASVLLNSTGNPE 85 (325)
Q Consensus 24 ~L~~~f-Y~~sCP~~-e~iVr~~v~~~~~~~--------~~~a~~llRL~FHDcfv-------~GcD-gSill~~~~~~E 85 (325)
.+-.+| |.+-+-.. .+.|+++|.+.+... ...+|-+|||+||++.+ +||+ |+|.+.. |
T Consensus 40 p~~~~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~p----e 115 (726)
T PRK15061 40 PMGEDFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAP----L 115 (726)
T ss_pred CCCCCCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcc----c
Confidence 355555 56555443 357999999998864 47999999999999986 7996 8898865 9
Q ss_pred cCCCCCCCCCCcchHHHHHHHHHHHhhCCCCCcHHHHHHhhhhhhhhccCCCCccccCCCcCCCCCchh-----------
Q 048664 86 RNAVPNQTLTGATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRA----------- 154 (325)
Q Consensus 86 ~~~~~N~~L~g~~~~~Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~----------- 154 (325)
++++.|.+|.. +..+++.||+++ |..||+||+|+||+..|||.+|||.|++..||.|...+...
T Consensus 116 ~~w~~N~gL~k-a~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~ 190 (726)
T PRK15061 116 NSWPDNVNLDK-ARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLG 190 (726)
T ss_pred ccchhhhhHHH-HHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccc
Confidence 99999999975 589999999998 35799999999999999999999999999999998654321
Q ss_pred ---------------------------hhhcCCCCCCCCHHHHHHHHHHcCCCcccceeee-cccccccccccccccccc
Q 048664 155 ---------------------------EAQNNIPAPTNNFTLLQRSFANQGLDLKDLVLLS-GAHTIGVSHCTSVSSRLY 206 (325)
Q Consensus 155 ---------------------------~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~~hc~~f~~Rl~ 206 (325)
+-...+|+|..++.+|++.|++||||++|||||+ ||||||++||..|.+||
T Consensus 191 ~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl- 269 (726)
T PRK15061 191 GDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV- 269 (726)
T ss_pred cccccccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc-
Confidence 0012379999999999999999999999999995 99999999999999998
Q ss_pred cCCCCCCCCCCCCHHHHHHhh--cccCCCCC-CCCCcccCC---CCCCcccCcHHHHHHhhc------------------
Q 048664 207 NFTGVGDQDPALDSEYAANLK--ARKCRTPN-DNTTLLEMD---PGSRKTFDLSYYNLLLKR------------------ 262 (325)
Q Consensus 207 ~f~~~~~~dp~ld~~~~~~L~--~~~Cp~~~-~~~~~~~lD---~~tp~~FDn~Yy~~l~~~------------------ 262 (325)
.+||.+++.+++.|. . .||.+. .++.+..+| +.||.+|||+||++|+..
T Consensus 270 ------gpdP~~a~~~~qgLgw~~-~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~ 342 (726)
T PRK15061 270 ------GPEPEAAPIEEQGLGWKN-SYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKD 342 (726)
T ss_pred ------CCCCCcCHHHHHhccccc-cCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccC
Confidence 269999999999995 6 999642 334456788 689999999999999984
Q ss_pred ------------------ccccccccccccChhHHHHHHHHhcCCHHHHHHHHHHHHHHh--hcCCCCCCCCC
Q 048664 263 ------------------RGLFVSDASLTTNSFTLSLVKQLLQGSLENFFAEFAKSVEKM--GRNKVKTGSEG 315 (325)
Q Consensus 263 ------------------~glL~SD~~L~~d~~t~~~V~~y~A~d~~~F~~~Fa~Am~Km--~~lgv~tg~~G 315 (325)
.+||+||++|..||+++++|++| |.|+++|+++|++||.|| ..+|+++-.-|
T Consensus 343 ~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~f-A~d~~~F~~~FA~A~~KL~hrdmgp~~ry~g 414 (726)
T PRK15061 343 GAAEDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRF-LENPEEFADAFARAWFKLTHRDMGPKSRYLG 414 (726)
T ss_pred ccccccCCcccccccccCcccccccHHhhcCCcHHHHHHHH-hcCHHHHHHHHHHHHHHHcccCCCchhhhcC
Confidence 58999999999999999999999 999999999999999999 55777654333
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=2.1e-50 Score=374.40 Aligned_cols=232 Identities=25% Similarity=0.300 Sum_probs=184.3
Q ss_pred cCcCcccCCCchHHHHHHHHHHHHHHhCCCchhhhhHhhhcccc-------ccCCCceEEecCCCCCccC-CCCCCCCCC
Q 048664 25 LQLGFYAKSCPRAEKIVLDYVNKHIHNAPSLAASFLRMHFHDCF-------VRGCDASVLLNSTGNPERN-AVPNQTLTG 96 (325)
Q Consensus 25 L~~~fY~~sCP~~e~iVr~~v~~~~~~~~~~a~~llRL~FHDcf-------v~GcDgSill~~~~~~E~~-~~~N~~L~g 96 (325)
++.+||+.. .-+.|...-..+...+++++|++|||+||||| ++||||||+++.. ..|+. .+.|.+|++
T Consensus 14 ~~~g~~~~~---f~~~v~~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~-~~En~G~~~n~~l~~ 89 (264)
T cd08201 14 LQSGYSARG---FVAGVTPCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD-RPENIGSGFNTTLNF 89 (264)
T ss_pred hcccceecc---cccccccccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC-ChhhccCchhhcccc
Confidence 445555532 12233333344556889999999999999999 8999999999742 34776 556677888
Q ss_pred cchHHHHHHHHHHHhhCCCCCcHHHHHHhhhhhhhhccCCCCccccCCCcCCCCCchhhhhcCCCCCCCCHHHHHHHHHH
Q 048664 97 ATFDFIERVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIRAEAQNNIPAPTNNFTLLQRSFAN 176 (325)
Q Consensus 97 ~~~~~Id~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~ 176 (325)
|+.|+.+ +||||||||||+|+||+.+|||.|+|++||+|++++.+. .||.|+.++++|++.|++
T Consensus 90 --~~~i~~~----------~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~ 153 (264)
T cd08201 90 --FVNFYSP----------RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRR 153 (264)
T ss_pred --ceeeccC----------ccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc----cCCCCccCHHHHHHHHHH
Confidence 8877543 699999999999999999999999999999999988763 499999999999999999
Q ss_pred cCCCcccceeeec-ccccccccccccccccccCCCCCCCCCCCCHHHHHHhhcccCCCCCCCCCcccCCCCCCcccCcHH
Q 048664 177 QGLDLKDLVLLSG-AHTIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTFDLSY 255 (325)
Q Consensus 177 ~Gl~~~dlVaLsG-aHTiG~~hc~~f~~Rl~~f~~~~~~dp~ld~~~~~~L~~~~Cp~~~~~~~~~~lD~~tp~~FDn~Y 255 (325)
+||+++|||+|+| |||||++||..|.+++- |. ...+...++| .||.+|||+|
T Consensus 154 ~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~---------~g-----------------~~~~~~~p~d-stp~~FDn~~ 206 (264)
T cd08201 154 QGFSTSEMIALVACGHTLGGVHSEDFPEIVP---------PG-----------------SVPDTVLQFF-DTTIQFDNKV 206 (264)
T ss_pred cCCChHHHheeecCCeeeeecccccchhhcC---------Cc-----------------cccCCCCCCC-CCccccchHH
Confidence 9999999999995 99999999998876541 10 0001133566 6999999999
Q ss_pred HHHHhhcc--c--------ccccccccccChhHHHHHHHHhcCCHHHHHHHHHHHHHHhhc
Q 048664 256 YNLLLKRR--G--------LFVSDASLTTNSFTLSLVKQLLQGSLENFFAEFAKSVEKMGR 306 (325)
Q Consensus 256 y~~l~~~~--g--------lL~SD~~L~~d~~t~~~V~~y~A~d~~~F~~~Fa~Am~Km~~ 306 (325)
|.+++++. + .+.||..++..+.-.. ++.+ | ++..|.+.++..+.||.+
T Consensus 207 f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n~t-~~~l-~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 207 VTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGNVT-MNEL-A-SPDTFQKTCADILQRMID 264 (264)
T ss_pred HHHHhcCCCCCceeecCCCCccchhhheecCccHH-HHHh-c-ChHHHHHHHHHHHHHHhC
Confidence 99999864 2 3689999998665554 4667 6 789999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=9.4e-39 Score=300.01 Aligned_cols=221 Identities=14% Similarity=0.158 Sum_probs=180.3
Q ss_pred HHHHHHHHhCCCchhhhhHhhhccccc-------cCCCce-EEecCCCCCccCCCCCCC--CCCcchHHHHHHHHHHHhh
Q 048664 43 DYVNKHIHNAPSLAASFLRMHFHDCFV-------RGCDAS-VLLNSTGNPERNAVPNQT--LTGATFDFIERVKRLVEDA 112 (325)
Q Consensus 43 ~~v~~~~~~~~~~a~~llRL~FHDcfv-------~GcDgS-ill~~~~~~E~~~~~N~~--L~g~~~~~Id~iK~~le~~ 112 (325)
+.+++.+....-.++.+|||+||++.+ ||++|+ |.+.. |++++.|.+ |.. +..+++.||+++...
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~p----e~~w~~N~~~~L~~-~~~~Le~ik~~~~~~ 91 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAP----QKDWEVNEPEELAK-VLAVLEGIQKEFNES 91 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCcc----ccCcCccCcHHHHH-HHHHHHHHHHHhccc
Confidence 667777777778999999999999986 899999 77754 999999998 874 589999999998522
Q ss_pred -CC-CCCcHHHHHHhhhhhhhhccCC-----CCccccCCCcCCCCCchhhh--hcCCCCCC------------CCHHHHH
Q 048664 113 -CP-GIVSCADILTLVTRDSIVATGG-----PSWKVPTGRRDGRVSIRAEA--QNNIPAPT------------NNFTLLQ 171 (325)
Q Consensus 113 -cp-~~VScADilalAar~av~~~GG-----P~~~v~~GR~D~~~s~~~~~--~~~lP~p~------------~~~~~l~ 171 (325)
-+ ..||.||+|+||+..|||.+|| |.+++.+||.|.+.+..... ...+|.+. ...+.|+
T Consensus 92 ~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lr 171 (297)
T cd08200 92 QSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLV 171 (297)
T ss_pred ccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHH
Confidence 12 2799999999999999999999 99999999999987643210 11345332 2457899
Q ss_pred HHHHHcCCCcccceeeeccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHhhcccCCCCCCCCCcccCCCCCCcc
Q 048664 172 RSFANQGLDLKDLVLLSGAH-TIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKT 250 (325)
Q Consensus 172 ~~F~~~Gl~~~dlVaLsGaH-TiG~~hc~~f~~Rl~~f~~~~~~dp~ld~~~~~~L~~~~Cp~~~~~~~~~~lD~~tp~~ 250 (325)
+.|.++|||++|||||+||| ++|..|..++ . |.|+ .+|.+
T Consensus 172 d~f~rlglsd~EmvaL~Gg~r~lG~~~~~s~-------~-------------------------G~wT-------~~p~~ 212 (297)
T cd08200 172 DKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------H-------------------------GVFT-------DRPGV 212 (297)
T ss_pred HHHHhCCCChHHHhheecchhhcccCCCCCC-------C-------------------------CCCc-------CCCCc
Confidence 99999999999999999998 7998874321 0 1233 58999
Q ss_pred cCcHHHHHHhhc--------------------cc-----ccccccccccChhHHHHHHHHhcCC--HHHHHHHHHHHHHH
Q 048664 251 FDLSYYNLLLKR--------------------RG-----LFVSDASLTTNSFTLSLVKQLLQGS--LENFFAEFAKSVEK 303 (325)
Q Consensus 251 FDn~Yy~~l~~~--------------------~g-----lL~SD~~L~~d~~t~~~V~~y~A~d--~~~F~~~Fa~Am~K 303 (325)
|||.||+||+.. .| .+.+|..|.+|++.+++|+.| |.| +++||+||++||.|
T Consensus 213 f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~Y-A~dd~~~~F~~DF~~A~~K 291 (297)
T cd08200 213 LTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVY-ASDDAQEKFVKDFVAAWTK 291 (297)
T ss_pred cccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHH-hcccchhHHHHHHHHHHHH
Confidence 999999999951 01 267899999999999999999 998 99999999999999
Q ss_pred hhcCC
Q 048664 304 MGRNK 308 (325)
Q Consensus 304 m~~lg 308 (325)
|+++.
T Consensus 292 lmeld 296 (297)
T cd08200 292 VMNLD 296 (297)
T ss_pred HHhcC
Confidence 99874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=9.7e-34 Score=291.82 Aligned_cols=221 Identities=17% Similarity=0.210 Sum_probs=177.1
Q ss_pred HHHHHHHHH---HHhCCCchhhhhHhhhccccc-------cCCCce-EEecCCCCCccCCCCC--CCCCCcchHHHHHHH
Q 048664 40 IVLDYVNKH---IHNAPSLAASFLRMHFHDCFV-------RGCDAS-VLLNSTGNPERNAVPN--QTLTGATFDFIERVK 106 (325)
Q Consensus 40 iVr~~v~~~---~~~~~~~a~~llRL~FHDcfv-------~GcDgS-ill~~~~~~E~~~~~N--~~L~g~~~~~Id~iK 106 (325)
+|+++|.+. +....-..+.|||++||++.+ ||++|+ |.|.. |++++.| .+|.. ++++++.||
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~p----e~~w~~N~p~gL~~-vl~~Le~Ik 503 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEP----QKNWPVNEPTRLAK-VLAVLEKIQ 503 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecch----hcCcccCCHHHHHH-HHHHHHHHH
Confidence 446666553 445566789999999999986 899999 77765 9999999 78874 589999999
Q ss_pred HHHHhhCCCCCcHHHHHHhhhhhhhhcc---CCC--CccccCCCcCCCCCchhhhhcCCC---C------------CCCC
Q 048664 107 RLVEDACPGIVSCADILTLVTRDSIVAT---GGP--SWKVPTGRRDGRVSIRAEAQNNIP---A------------PTNN 166 (325)
Q Consensus 107 ~~le~~cp~~VScADilalAar~av~~~---GGP--~~~v~~GR~D~~~s~~~~~~~~lP---~------------p~~~ 166 (325)
+++.. ..||.||+|+||+..|||.+ ||| .+++.+||.|.+.... +++...| . ....
T Consensus 504 ~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~~~ 579 (716)
T TIGR00198 504 AEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAVTP 579 (716)
T ss_pred HHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccCCH
Confidence 98842 27999999999999999998 898 5788999999987643 2222222 1 1234
Q ss_pred HHHHHHHHHHcCCCcccceeeeccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHhhcccCCCCCCCCCcccCCC
Q 048664 167 FTLLQRSFANQGLDLKDLVLLSGAH-TIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDP 245 (325)
Q Consensus 167 ~~~l~~~F~~~Gl~~~dlVaLsGaH-TiG~~hc~~f~~Rl~~f~~~~~~dp~ld~~~~~~L~~~~Cp~~~~~~~~~~lD~ 245 (325)
.+.|++.|.++|||++|||||+||| ++|+.|..++ . |.++
T Consensus 580 ~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~-------~-------------------------G~~T------- 620 (716)
T TIGR00198 580 EELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSK-------H-------------------------GVFT------- 620 (716)
T ss_pred HHHHHHHHHhCCCChHHHHheecchhhccccCCCCC-------C-------------------------CCCc-------
Confidence 5678999999999999999999995 9999985321 0 1132
Q ss_pred CCCcccCcHHHHHHhhcc--------------------c---cc--ccccccccChhHHHHHHHHhcCCH--HHHHHHHH
Q 048664 246 GSRKTFDLSYYNLLLKRR--------------------G---LF--VSDASLTTNSFTLSLVKQLLQGSL--ENFFAEFA 298 (325)
Q Consensus 246 ~tp~~FDn~Yy~~l~~~~--------------------g---lL--~SD~~L~~d~~t~~~V~~y~A~d~--~~F~~~Fa 298 (325)
.+|.+|||.||+||+... | ++ .+|..|.+|++.|++|+.| |.|+ ++||+||+
T Consensus 621 ~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~Y-A~dd~~~~F~~DF~ 699 (716)
T TIGR00198 621 DRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVY-AQDDAREKFVKDFV 699 (716)
T ss_pred CCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHH-hcccccchHHHHHH
Confidence 579999999999999621 2 22 6799999999999999999 9987 89999999
Q ss_pred HHHHHhhcCCC
Q 048664 299 KSVEKMGRNKV 309 (325)
Q Consensus 299 ~Am~Km~~lgv 309 (325)
+||.|+++++-
T Consensus 700 ~Aw~Klm~ldr 710 (716)
T TIGR00198 700 AAWTKVMNLDR 710 (716)
T ss_pred HHHHHHHhCCC
Confidence 99999999874
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=3.9e-33 Score=286.00 Aligned_cols=221 Identities=16% Similarity=0.179 Sum_probs=180.3
Q ss_pred HHHHHHHHhCCCchhhhhHhhhccccc-------cCCCce-EEecCCCCCccCCCCCC--CCCCcchHHHHHHHHHHHhh
Q 048664 43 DYVNKHIHNAPSLAASFLRMHFHDCFV-------RGCDAS-VLLNSTGNPERNAVPNQ--TLTGATFDFIERVKRLVEDA 112 (325)
Q Consensus 43 ~~v~~~~~~~~~~a~~llRL~FHDcfv-------~GcDgS-ill~~~~~~E~~~~~N~--~L~g~~~~~Id~iK~~le~~ 112 (325)
..+++.+....-..+.|||++||++.+ ||++|+ |.|.. |++++.|. +|.. ++++++.||++++..
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~P----q~~w~~N~p~~L~~-vl~~LE~Ik~~f~~~ 516 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAP----QKDWEVNEPAQLAK-VLAVLEGIQAEFNAA 516 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceeccc----ccCccccCHHHHHH-HHHHHHHHHHHHhhc
Confidence 566667777777899999999999986 899999 88865 99999998 8874 589999999999643
Q ss_pred C--CCCCcHHHHHHhhhhhhhhcc---CC--CCccccCCCcCCCCCchhhhh---cCCCCCC------------CCHHHH
Q 048664 113 C--PGIVSCADILTLVTRDSIVAT---GG--PSWKVPTGRRDGRVSIRAEAQ---NNIPAPT------------NNFTLL 170 (325)
Q Consensus 113 c--p~~VScADilalAar~av~~~---GG--P~~~v~~GR~D~~~s~~~~~~---~~lP~p~------------~~~~~l 170 (325)
- ...||.||+|+||+..|||.+ || |.+++.+||.|.+.... +++ ..+|.+. ...+.|
T Consensus 517 ~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e~~L 595 (726)
T PRK15061 517 QSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPEELL 595 (726)
T ss_pred cCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCHHHHH
Confidence 2 236999999999999999998 68 99999999999987543 222 2456532 234789
Q ss_pred HHHHHHcCCCcccceeeeccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHhhcccCCCCCCCCCcccCCCCCCc
Q 048664 171 QRSFANQGLDLKDLVLLSGAH-TIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRK 249 (325)
Q Consensus 171 ~~~F~~~Gl~~~dlVaLsGaH-TiG~~hc~~f~~Rl~~f~~~~~~dp~ld~~~~~~L~~~~Cp~~~~~~~~~~lD~~tp~ 249 (325)
++.|.++|||++|||||+||| ++|..|-.++ . +.++ .+|.
T Consensus 596 ~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~-------~-------------------------G~~T-------~~p~ 636 (726)
T PRK15061 596 VDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK-------H-------------------------GVFT-------DRPG 636 (726)
T ss_pred HHHHHhCCCChHHHhheecchhhcccCCCCCC-------C-------------------------CCCc-------CCCC
Confidence 999999999999999999997 7888773211 0 1132 5799
Q ss_pred ccCcHHHHHHhhc----------c----------c---c--cccccccccChhHHHHHHHHhcCC--HHHHHHHHHHHHH
Q 048664 250 TFDLSYYNLLLKR----------R----------G---L--FVSDASLTTNSFTLSLVKQLLQGS--LENFFAEFAKSVE 302 (325)
Q Consensus 250 ~FDn~Yy~~l~~~----------~----------g---l--L~SD~~L~~d~~t~~~V~~y~A~d--~~~F~~~Fa~Am~ 302 (325)
+|||.||+||+.. . | + +.+|..|.+|++.|++|+.| |.| +++||+||++||.
T Consensus 637 ~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvY-A~dd~~~kF~~DF~~Aw~ 715 (726)
T PRK15061 637 VLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVY-ASDDAKEKFVRDFVAAWT 715 (726)
T ss_pred ccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHH-hcccchhHHHHHHHHHHH
Confidence 9999999999951 0 1 1 47899999999999999999 998 9999999999999
Q ss_pred HhhcCCC
Q 048664 303 KMGRNKV 309 (325)
Q Consensus 303 Km~~lgv 309 (325)
|+++++-
T Consensus 716 Kvmeldr 722 (726)
T PRK15061 716 KVMNLDR 722 (726)
T ss_pred HHHhCCC
Confidence 9999873
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.5e-28 Score=239.05 Aligned_cols=250 Identities=16% Similarity=0.212 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHhC--------CCchhhhhHhhhccccc-------cCC-CceEEecCCCCCccCCCCCCCCCCcchHHHH
Q 048664 40 IVLDYVNKHIHNA--------PSLAASFLRMHFHDCFV-------RGC-DASVLLNSTGNPERNAVPNQTLTGATFDFIE 103 (325)
Q Consensus 40 iVr~~v~~~~~~~--------~~~a~~llRL~FHDcfv-------~Gc-DgSill~~~~~~E~~~~~N~~L~g~~~~~Id 103 (325)
.|+..+...+... ...+|-+|||+||-+.+ +|. .|...+.. +.++|.|.+|+. ++.++.
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFaP----lnSWPDN~nLDK-arRLLW 145 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAP----LNSWPDNANLDK-ARRLLW 145 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceeccc----ccCCCcccchHH-HHHHhh
Confidence 4555555555543 25799999999999976 333 33333432 778899999985 599999
Q ss_pred HHHHHHHhhCCCCCcHHHHHHhhhhhhhhccCCCCccccCCCcCCCCCch------------------------------
Q 048664 104 RVKRLVEDACPGIVSCADILTLVTRDSIVATGGPSWKVPTGRRDGRVSIR------------------------------ 153 (325)
Q Consensus 104 ~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~------------------------------ 153 (325)
.||+++ +..||+||+|.||+.+|++.+|++++.+..||.|--.+..
T Consensus 146 PIKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Plaavq 221 (730)
T COG0376 146 PIKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQ 221 (730)
T ss_pred hHhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhhe
Confidence 999998 4689999999999999999999999999999999877654
Q ss_pred --------hhhhcCCCCCCCCHHHHHHHHHHcCCCcccceeee-cccccccccccccccccccCCCCCCCCCCCCHHHHH
Q 048664 154 --------AEAQNNIPAPTNNFTLLQRSFANQGLDLKDLVLLS-GAHTIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAA 224 (325)
Q Consensus 154 --------~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~~hc~~f~~Rl~~f~~~~~~dp~ld~~~~~ 224 (325)
.+ .+..|+|..+..+++..|++|++|++|.|||+ ||||+|++|-..-.+-+ +++|.--+--.+
T Consensus 222 MGLIYVNPEG-png~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v-------g~ePe~a~ie~q 293 (730)
T COG0376 222 MGLIYVNPEG-PNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV-------GPEPEAAPIEQQ 293 (730)
T ss_pred eeeEEeCCCC-CCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc-------CCCccccchhhh
Confidence 11 24578899999999999999999999999997 69999999976422211 356654444344
Q ss_pred Hhhcc-cCCCC-CCCCCcccC---CCCCCcccCcHHHHHHhhcc-----------------------------------c
Q 048664 225 NLKAR-KCRTP-NDNTTLLEM---DPGSRKTFDLSYYNLLLKRR-----------------------------------G 264 (325)
Q Consensus 225 ~L~~~-~Cp~~-~~~~~~~~l---D~~tp~~FDn~Yy~~l~~~~-----------------------------------g 264 (325)
-|-.. +|..+ +.++.+..+ -+.||++|||+||.+|+... .
T Consensus 294 GlGW~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~ 373 (730)
T COG0376 294 GLGWANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPM 373 (730)
T ss_pred ccccccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCce
Confidence 33220 22221 122222222 24689999999999998631 4
Q ss_pred ccccccccccChhHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Q 048664 265 LFVSDASLTTNSFTLSLVKQLLQGSLENFFAEFAKSVEKMGRN 307 (325)
Q Consensus 265 lL~SD~~L~~d~~t~~~V~~y~A~d~~~F~~~Fa~Am~Km~~l 307 (325)
||++|.+|..||..++|.++| ..|++.|.+.|++||-||..-
T Consensus 374 MlttDlaLr~DP~Y~kIs~rf-~e~pd~F~~~FArAWfKLtHR 415 (730)
T COG0376 374 MLTTDLALRFDPEYEKISRRF-LEDPDEFADAFARAWFKLTHR 415 (730)
T ss_pred eeccchhhhcChHHHHHHHHH-HhCHHHHHHHHHHHHHHHhhc
Confidence 799999999999999999999 999999999999999999753
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.31 E-value=2.4e-11 Score=121.27 Aligned_cols=216 Identities=18% Similarity=0.228 Sum_probs=152.0
Q ss_pred HHHHHHHHhCCCchhhhhHhhhccccc-------cCCCceEE-ecCCCCCccCCCCCCC--CCCcchHHHHHHHHHHHhh
Q 048664 43 DYVNKHIHNAPSLAASFLRMHFHDCFV-------RGCDASVL-LNSTGNPERNAVPNQT--LTGATFDFIERVKRLVEDA 112 (325)
Q Consensus 43 ~~v~~~~~~~~~~a~~llRL~FHDcfv-------~GcDgSil-l~~~~~~E~~~~~N~~--L~g~~~~~Id~iK~~le~~ 112 (325)
..++..+.+..-....++-.+|--+-+ +|.+|.-+ |.+ .++++.|.. |.. ++.+++.|.+..+
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaP----qkdWevN~P~~l~k-vl~~le~iq~~fn-- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAP----QKDWEVNQPAELAK-VLAVLEKIQKEFN-- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecc----cccCCCCCHHHHHH-HHHHHHHHHHHhc--
Confidence 345556666666678888888887754 67877654 543 788888863 332 4778888888876
Q ss_pred CCCCCcHHHHHHhhhhhhhhcc---CCCCc--cccCCCcCCCCCchhhhhcC--C-CC------------CCCCHHHHHH
Q 048664 113 CPGIVSCADILTLVTRDSIVAT---GGPSW--KVPTGRRDGRVSIRAEAQNN--I-PA------------PTNNFTLLQR 172 (325)
Q Consensus 113 cp~~VScADilalAar~av~~~---GGP~~--~v~~GR~D~~~s~~~~~~~~--l-P~------------p~~~~~~l~~ 172 (325)
..||.||+|+|++..+|+.+ +|-.+ |+..||.|++.... +++.. | |- ...+-+-|++
T Consensus 525 --kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqt-Dv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvD 601 (730)
T COG0376 525 --KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQT-DVESFAVLEPIADGFRNYVKKDYVLTPEELLVD 601 (730)
T ss_pred --CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhc-chhhhhcccccchhhhhhccCCCcCCHHHHHHH
Confidence 46999999999999999973 67654 56699999976543 11110 1 11 1123455788
Q ss_pred HHHHcCCCcccceeeeccc-ccccccccccccccccCCCCCCCCCCCCHHHHHHhhcccCCCCCCCCCcccCCCCCCccc
Q 048664 173 SFANQGLDLKDLVLLSGAH-TIGVSHCTSVSSRLYNFTGVGDQDPALDSEYAANLKARKCRTPNDNTTLLEMDPGSRKTF 251 (325)
Q Consensus 173 ~F~~~Gl~~~dlVaLsGaH-TiG~~hc~~f~~Rl~~f~~~~~~dp~ld~~~~~~L~~~~Cp~~~~~~~~~~lD~~tp~~F 251 (325)
.-+-.+||.-||++|.||- -+|. ||.|+ ...++- ..|...
T Consensus 602 kAqlL~LtapemtVLiGGlRvLg~-----------n~g~s--------------------------~~GVfT--~~pg~L 642 (730)
T COG0376 602 KAQLLTLTAPEMTVLIGGLRVLGA-----------NYGGS--------------------------KHGVFT--DRPGVL 642 (730)
T ss_pred HHHHhccCCccceEEEcceEeecc-----------CCCCC--------------------------ccceec--cCcccc
Confidence 8888999999999999875 2222 22221 112322 367888
Q ss_pred CcHHHHHHhhc----------c----------cc-----cccccccccChhHHHHHHHHhcCC--HHHHHHHHHHHHHHh
Q 048664 252 DLSYYNLLLKR----------R----------GL-----FVSDASLTTNSFTLSLVKQLLQGS--LENFFAEFAKSVEKM 304 (325)
Q Consensus 252 Dn~Yy~~l~~~----------~----------gl-----L~SD~~L~~d~~t~~~V~~y~A~d--~~~F~~~Fa~Am~Km 304 (325)
.|.||.||+.- + |- -..|..+-+++..|.+.+-| |.+ ++.|.+||+.||.|+
T Consensus 643 tndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVY-a~dda~ekFv~DFvaaw~kV 721 (730)
T COG0376 643 TNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVY-ASDDAKEKFVKDFVAAWTKV 721 (730)
T ss_pred cchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHH-hccchHHHHHHHHHHHHHHH
Confidence 88888888852 1 21 24688888999999999999 864 789999999999999
Q ss_pred hcCC
Q 048664 305 GRNK 308 (325)
Q Consensus 305 ~~lg 308 (325)
.++.
T Consensus 722 Mn~D 725 (730)
T COG0376 722 MNLD 725 (730)
T ss_pred hccc
Confidence 9875
No 19
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.75 E-value=23 Score=26.97 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCCchhhhhHhhhccc
Q 048664 39 KIVLDYVNKHIHNAPSLAASFLRMHFHDC 67 (325)
Q Consensus 39 ~iVr~~v~~~~~~~~~~a~~llRL~FHDc 67 (325)
-|.|+.+.+.+.++|.+-...||+.+--.
T Consensus 23 fiark~~~k~lk~NPpine~~iR~M~~qm 51 (71)
T COG3763 23 FIARKQMKKQLKDNPPINEEMIRMMMAQM 51 (71)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 38999999999999999999999988643
No 20
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=53.27 E-value=12 Score=29.19 Aligned_cols=19 Identities=11% Similarity=0.155 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhcCCCC
Q 048664 292 NFFAEFAKSVEKMGRNKVK 310 (325)
Q Consensus 292 ~F~~~Fa~Am~Km~~lgv~ 310 (325)
...++|..||.||+.||..
T Consensus 2 ~m~~~F~~am~KlavLG~d 20 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHD 20 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 3578999999999999863
No 21
>PF15240 Pro-rich: Proline-rich
Probab=38.36 E-value=17 Score=32.55 Aligned_cols=16 Identities=31% Similarity=0.412 Sum_probs=11.5
Q ss_pred HHHHHHHHhhhccccc
Q 048664 9 VVFLSLFGVVGLSEAQ 24 (325)
Q Consensus 9 ~~~~~~~~~~~~~~~~ 24 (325)
||+||..+||++++|+
T Consensus 2 LlVLLSvALLALSSAQ 17 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQ 17 (179)
T ss_pred hhHHHHHHHHHhhhcc
Confidence 5677777777777765
No 22
>PRK01844 hypothetical protein; Provisional
Probab=28.21 E-value=99 Score=23.73 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCCchhhhhHhhhccc
Q 048664 40 IVLDYVNKHIHNAPSLAASFLRMHFHDC 67 (325)
Q Consensus 40 iVr~~v~~~~~~~~~~a~~llRL~FHDc 67 (325)
+-|+.+++.++++|.+-...||..|--.
T Consensus 24 ~ark~~~k~lk~NPpine~mir~Mm~QM 51 (72)
T PRK01844 24 IARKYMMNYLQKNPPINEQMLKMMMMQM 51 (72)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 7889999999999999999999887543
No 23
>PRK00523 hypothetical protein; Provisional
Probab=25.10 E-value=1.2e+02 Score=23.32 Aligned_cols=28 Identities=14% Similarity=0.406 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhCCCchhhhhHhhhccc
Q 048664 40 IVLDYVNKHIHNAPSLAASFLRMHFHDC 67 (325)
Q Consensus 40 iVr~~v~~~~~~~~~~a~~llRL~FHDc 67 (325)
+-|..+++.+.++|.+-...||..|--.
T Consensus 25 iark~~~k~l~~NPpine~mir~M~~QM 52 (72)
T PRK00523 25 VSKKMFKKQIRENPPITENMIRAMYMQM 52 (72)
T ss_pred HHHHHHHHHHHHCcCCCHHHHHHHHHHh
Confidence 7889999999999999999999887543
No 24
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=24.45 E-value=52 Score=28.22 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHHcCCCcccc-eeeeccccccccc
Q 048664 165 NNFTLLQRSFANQGLDLKDL-VLLSGAHTIGVSH 197 (325)
Q Consensus 165 ~~~~~l~~~F~~~Gl~~~dl-VaLsGaHTiG~~h 197 (325)
+++.+.+-.|+++||++.++ |.|--+|-||++.
T Consensus 31 ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 34566677999999999886 5566999999875
No 25
>PLN02161 beta-amylase
Probab=23.86 E-value=1.1e+02 Score=31.90 Aligned_cols=34 Identities=26% Similarity=0.419 Sum_probs=24.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHhh-----cCCCCCCCCCcccc
Q 048664 281 LVKQLLQGSLENFFAEFAKSVEKMG-----RNKVKTGSEGEIRK 319 (325)
Q Consensus 281 ~V~~y~A~d~~~F~~~Fa~Am~Km~-----~lgv~tg~~GeiR~ 319 (325)
-++.| ..|++.|...|.-+. +|.|=-|+.||.|=
T Consensus 234 plq~Y-----~Dfm~SFr~~F~~~~~~~I~eI~VGlGP~GELRY 272 (531)
T PLN02161 234 AVQCY-----EDFMLSFSTKFEPYIGNVIEEISIGLGPSGELRY 272 (531)
T ss_pred HHHHH-----HHHHHHHHHHHHHHhcCceEEEEeccccCccccC
Confidence 45677 358888888888764 45555689999983
No 26
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=22.45 E-value=69 Score=21.30 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=12.1
Q ss_pred chHHHHHHHHHHhhhcc
Q 048664 5 DYIGVVFLSLFGVVGLS 21 (325)
Q Consensus 5 ~~~~~~~~~~~~~~~~~ 21 (325)
.||+|+++++++++.++
T Consensus 17 LY~GLllifvl~vLFss 33 (37)
T PF02419_consen 17 LYWGLLLIFVLAVLFSS 33 (37)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 35999877777776543
No 27
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=21.83 E-value=71 Score=21.39 Aligned_cols=16 Identities=25% Similarity=0.667 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHhhhcc
Q 048664 6 YIGVVFLSLFGVVGLS 21 (325)
Q Consensus 6 ~~~~~~~~~~~~~~~~ 21 (325)
||+|++++.++++.++
T Consensus 20 y~GlLlifvl~vLFss 35 (39)
T PRK00753 20 YLGLLLVFVLGILFSS 35 (39)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5999877777776543
No 28
>CHL00038 psbL photosystem II protein L
Probab=21.62 E-value=67 Score=21.43 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHhhhc
Q 048664 6 YIGVVFLSLFGVVGL 20 (325)
Q Consensus 6 ~~~~~~~~~~~~~~~ 20 (325)
||+|++++.++++.+
T Consensus 19 y~GLLlifvl~vlfs 33 (38)
T CHL00038 19 YWGLLLIFVLAVLFS 33 (38)
T ss_pred HHHHHHHHHHHHHHH
Confidence 599987777777654
No 29
>PTZ00411 transaldolase-like protein; Provisional
Probab=21.41 E-value=46 Score=32.75 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=29.1
Q ss_pred cCCCCccccCCCcCCCCCchhhhhcCCCCC---CCCHHHHHHHHHHcCCCc
Q 048664 134 TGGPSWKVPTGRRDGRVSIRAEAQNNIPAP---TNNFTLLQRSFANQGLDL 181 (325)
Q Consensus 134 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p---~~~~~~l~~~F~~~Gl~~ 181 (325)
+|-..+..++||.+...-.+.......+.. -..+.++.++|++.|+..
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T 230 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKT 230 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCe
Confidence 577788999999865432221111111211 234678888999999865
Done!