Query 048669
Match_columns 568
No_of_seqs 224 out of 1010
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 11:51:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048669.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048669hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03202 protein argonaute; Pr 100.0 3E-102 8E-107 895.2 54.1 526 17-567 104-722 (900)
2 KOG1042 Germ-line stem cell di 100.0 1.7E-84 3.6E-89 681.6 26.4 455 4-566 116-685 (845)
3 KOG1041 Translation initiation 100.0 2.1E-81 4.5E-86 717.3 41.5 478 16-567 114-690 (876)
4 cd04657 Piwi_ago-like Piwi_ago 100.0 2.9E-51 6.2E-56 441.2 25.0 248 294-567 1-282 (426)
5 cd04658 Piwi_piwi-like_Euk Piw 100.0 5.9E-51 1.3E-55 442.3 27.6 277 254-567 2-310 (448)
6 cd02826 Piwi-like Piwi-like: P 100.0 9.2E-43 2E-47 371.9 23.7 233 307-567 2-255 (393)
7 PF02171 Piwi: Piwi domain; I 100.0 1.1E-31 2.3E-36 277.4 13.5 154 398-567 1-160 (302)
8 cd04659 Piwi_piwi-like_ProArk 99.9 1.4E-22 2.9E-27 217.7 14.9 165 380-566 95-271 (404)
9 PF02170 PAZ: PAZ domain; Int 99.6 6.4E-16 1.4E-20 140.9 8.3 70 195-265 64-135 (135)
10 PF08699 DUF1785: Domain of un 99.5 1.6E-14 3.5E-19 108.7 3.9 46 143-189 1-46 (52)
11 cd02825 PAZ PAZ domain, named 99.2 1.1E-11 2.3E-16 109.9 5.4 46 195-241 67-115 (115)
12 cd02846 PAZ_argonaute_like PAZ 99.2 1.5E-11 3.2E-16 108.8 5.1 44 197-241 71-114 (114)
13 cd02845 PAZ_piwi_like PAZ doma 99.2 1.1E-11 2.4E-16 109.9 3.9 46 196-242 62-115 (117)
14 cd02844 PAZ_CAF_like PAZ domai 98.5 7E-08 1.5E-12 87.6 3.4 45 197-242 66-133 (135)
15 cd02843 PAZ_dicer_like PAZ dom 96.4 0.0019 4.1E-08 57.2 2.0 60 162-226 42-106 (122)
16 COG1431 Argonaute homolog, imp 95.3 0.13 2.9E-06 56.3 10.9 85 399-498 409-496 (685)
17 PF00763 THF_DHG_CYH: Tetrahyd 62.5 20 0.00043 31.6 5.8 69 381-450 16-85 (117)
18 PRK14185 bifunctional 5,10-met 55.4 37 0.00081 35.1 7.1 69 382-450 18-87 (293)
19 cd06559 Endonuclease_V Endonuc 53.7 73 0.0016 31.2 8.5 73 472-560 24-99 (208)
20 PRK14187 bifunctional 5,10-met 51.8 58 0.0013 33.7 7.8 56 395-450 32-88 (294)
21 KOG3123 Diphthine synthase [Tr 51.6 19 0.00042 35.0 4.0 46 396-444 132-177 (272)
22 PRK14184 bifunctional 5,10-met 51.1 57 0.0012 33.6 7.6 69 381-449 17-86 (286)
23 PRK14171 bifunctional 5,10-met 50.0 64 0.0014 33.3 7.8 65 385-449 22-87 (288)
24 PRK14176 bifunctional 5,10-met 48.6 75 0.0016 32.8 8.0 56 395-450 38-94 (287)
25 PF08459 UvrC_HhH_N: UvrC Heli 48.4 30 0.00065 32.3 4.7 73 472-560 10-85 (155)
26 PRK14188 bifunctional 5,10-met 48.1 68 0.0015 33.3 7.7 68 383-450 20-88 (296)
27 PLN02897 tetrahydrofolate dehy 47.9 62 0.0013 34.2 7.4 56 394-449 85-141 (345)
28 PRK14192 bifunctional 5,10-met 47.3 67 0.0014 33.0 7.5 76 384-459 22-100 (283)
29 PRK10792 bifunctional 5,10-met 46.9 63 0.0014 33.3 7.2 68 383-450 21-89 (285)
30 PRK14168 bifunctional 5,10-met 46.6 64 0.0014 33.4 7.2 70 381-450 19-89 (297)
31 PLN02516 methylenetetrahydrofo 46.4 78 0.0017 32.8 7.8 57 394-450 38-95 (299)
32 PRK14183 bifunctional 5,10-met 46.4 69 0.0015 32.9 7.3 56 395-450 31-87 (281)
33 PRK14186 bifunctional 5,10-met 46.0 73 0.0016 33.0 7.5 56 395-450 32-88 (297)
34 PRK14180 bifunctional 5,10-met 45.5 72 0.0016 32.8 7.3 68 383-450 19-87 (282)
35 PLN02616 tetrahydrofolate dehy 45.3 76 0.0017 33.8 7.6 65 385-449 93-158 (364)
36 PRK14174 bifunctional 5,10-met 44.7 77 0.0017 32.8 7.5 56 395-450 31-87 (295)
37 PRK14179 bifunctional 5,10-met 43.6 85 0.0019 32.3 7.5 56 395-450 32-88 (284)
38 PRK14177 bifunctional 5,10-met 43.4 88 0.0019 32.2 7.6 60 395-454 33-95 (284)
39 PRK14194 bifunctional 5,10-met 41.9 86 0.0019 32.6 7.3 55 395-449 33-88 (301)
40 PRK14169 bifunctional 5,10-met 41.9 90 0.0019 32.1 7.4 55 395-449 30-85 (282)
41 PRK14166 bifunctional 5,10-met 41.1 86 0.0019 32.3 7.1 55 395-449 30-85 (282)
42 PRK14191 bifunctional 5,10-met 40.6 98 0.0021 31.9 7.4 57 394-450 30-87 (285)
43 PRK14193 bifunctional 5,10-met 39.7 98 0.0021 31.9 7.2 56 395-450 32-88 (284)
44 PRK14190 bifunctional 5,10-met 39.3 98 0.0021 31.9 7.2 56 395-450 32-88 (284)
45 PF09373 PMBR: Pseudomurein-bi 38.7 35 0.00075 23.0 2.6 18 541-559 15-32 (33)
46 PRK14173 bifunctional 5,10-met 36.5 1.2E+02 0.0025 31.4 7.2 56 395-450 29-85 (287)
47 PRK14172 bifunctional 5,10-met 36.1 1.2E+02 0.0027 31.1 7.3 56 395-450 32-88 (278)
48 PRK14181 bifunctional 5,10-met 34.3 1.3E+02 0.0029 31.0 7.2 56 394-449 25-81 (287)
49 PRK14170 bifunctional 5,10-met 34.0 1.3E+02 0.0028 31.0 7.0 55 395-449 31-86 (284)
50 PRK14178 bifunctional 5,10-met 33.8 1.6E+02 0.0034 30.3 7.7 57 394-450 25-82 (279)
51 PRK14167 bifunctional 5,10-met 32.8 1.4E+02 0.0031 30.9 7.2 56 395-450 31-87 (297)
52 PRK14189 bifunctional 5,10-met 32.5 1.6E+02 0.0035 30.3 7.5 55 395-449 32-87 (285)
53 PRK14182 bifunctional 5,10-met 31.6 1.5E+02 0.0032 30.5 7.0 55 395-449 30-85 (282)
54 PRK14175 bifunctional 5,10-met 30.3 1.6E+02 0.0034 30.4 7.0 55 395-449 32-87 (286)
55 COG0190 FolD 5,10-methylene-te 30.3 1.5E+02 0.0032 30.5 6.7 67 383-449 18-85 (283)
56 PRK12306 uvrC excinuclease ABC 23.4 2.3E+02 0.005 31.8 7.2 73 472-560 365-440 (519)
57 PRK14670 uvrC excinuclease ABC 22.9 2.4E+02 0.0052 32.1 7.3 75 472-560 357-434 (574)
58 PRK14672 uvrC excinuclease ABC 22.1 2.5E+02 0.0053 32.7 7.2 74 472-560 453-528 (691)
No 1
>PLN03202 protein argonaute; Provisional
Probab=100.00 E-value=3.5e-102 Score=895.21 Aligned_cols=526 Identities=69% Similarity=1.139 Sum_probs=446.0
Q ss_pred CccccCccceeecCCCCCCceEEEEEeCCCCCCccCCCCCCCCCCCCCchhhhh-hccCCCceEEEEEEEeeccChHHHH
Q 048669 17 KLGPTGEKSLFTISALPHKKMEFLVLLDNPSSYRTTSNDSPDGHGSNNERDRKR-RRVSQSKTFKVEISVAAKIPLQAIA 95 (568)
Q Consensus 17 ~~~~DG~~~l~t~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~i~~~~~i~~~~l~ 95 (568)
.+||||+++|||+++||++..++.|.++++++.+...+-+|+++++|++++.+| ++..+++.|+|+|+++++|++++|.
T Consensus 104 ~~~~Dg~~~l~s~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~L~ 183 (900)
T PLN03202 104 DFAYDGEKSLFTVGALPQNKLEFTVVLEDVSSNRNNGNGSPVGNGSPNGGDRKRSRRPYQSKTFKVEISFAAKIPMQAIA 183 (900)
T ss_pred ceeecCccceEECccCCCCCceEEEEecccccccccccccccccCCccccccccccccCCCceEEEEEEEccccCHHHHH
Confidence 689999999999999998777788887653111100112344445554444333 3345678999999999999999999
Q ss_pred HHhcCCCCcChHHHHHHHHHHHhhhhhhcccccchhhhhhcccccceeeecccccCCCCCCcccCCCcEEEeeceEEEEE
Q 048669 96 AALHGQESQNSREAFRVLDIILRQHAAKHMIDHRSISIFLATSYRGCFLVRQSFFQNEPRSFFDLGGGVLGCWGFHSSFQ 175 (568)
Q Consensus 96 ~~l~g~~~~~~~~~iq~Lniilr~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~fF~~~~~~~~~l~~gle~w~Gf~~Svr 175 (568)
+||.|.....+.++||+||||||+.++. .+++.+||+||.+......++++|+|+|+||++|||
T Consensus 184 ~~l~~~~~~~~~~~iq~lnivlr~~~~~----------------~~~~~~gr~ff~~~~~~~~~l~~gle~~~G~~~Svr 247 (900)
T PLN03202 184 NALRGQESENSQDALRVLDIILRQHAAK----------------QGCLLVRQSFFHNDPKNFVDLGGGVLGCRGFHSSFR 247 (900)
T ss_pred HHHcCCCCCCcHHHHHHHHHHHhhhhhh----------------CCCceeccccCCCCCcccccCCCceEEeeeeeeEee
Confidence 9999998888899999999999999986 568899999998765444578999999999999999
Q ss_pred ecCCceeEEEeeee----------------------------------------------------------cCCCC---
Q 048669 176 ATQGGLSLNIGVKD----------------------------------------------------------RNDDV--- 194 (568)
Q Consensus 176 ~~~~~l~LniDvs~----------------------------------------------------------~~~~~--- 194 (568)
+++++|+||||++| .+.+|
T Consensus 248 ~~~~~l~LnvDvs~~~F~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~~F~~~ 327 (900)
T PLN03202 248 TTQGGLSLNIDVSTTMIVQPGPVVDFLIANQNVRDPFQIDWSKAKRMLKNLRVKVSPSNQEYKITGLSEKPCKEQTFSLK 327 (900)
T ss_pred eccCceEEeeeeeeeeeecCCcHHHHHHHhcCcCCccchhHHHHHHHhcCCEEEEecCCceEEEeeccCCCCcceEEEcc
Confidence 99999999999999 00011
Q ss_pred ---------CceEEehHHHHHhhcCCcccCCC-CCceEEeCCCCCCeeEeccceeecCCccccccCCHHHHHHHHHHhcC
Q 048669 195 ---------KCVDVTVFDYFVNHRRINLCFSG-DFPCIDVGKPRKPTYIPIELCSLLSLQRYTKALTVFQRSALVEKSQQ 264 (568)
Q Consensus 195 ---------~g~~iSv~dYf~~~Y~i~L~~~p-~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~kL~~~q~~~mi~~t~~ 264 (568)
.+++|||+|||+++||++|+| | ++|||++|+..+++|||||||.|+|||+++++|++.|+++||++|+.
T Consensus 328 ~~~~~~~~~~~~~iSv~dYfk~~Yni~l~~-p~~lPlv~~g~~~~~~ylP~ElC~i~~~Q~~~~~l~~~q~~~mik~a~~ 406 (900)
T PLN03202 328 QRNGNGNEVETVEITVYDYFVKHRGIELRY-SGDLPCINVGKPKRPTYFPIELCSLVSLQRYTKALSTLQRSSLVEKSRQ 406 (900)
T ss_pred cCCcccccCCcceEEHHHHHHHHcCccccC-CCCCCEEEcCCCCCCeEEcceeeEccCCceechhCCHHHHHHHHHHHcc
Confidence 134899999999999999999 7 99999999988899999999999999999999999999999999999
Q ss_pred ChHHHHHHhhccchhHHHHHHHhcCCCCcccccccCeeecCcceEeeeEecCCCee---------------------ecc
Q 048669 265 KPQEKMKIITDDSMEHYAQVMRSNKNDSEPMLRSCGISINSRFAQVEGRILSAPRI---------------------FVP 323 (568)
Q Consensus 265 ~P~~R~~~I~~~~~~~f~~~l~~~~~~~~~~l~~fGl~i~~~~~~V~gRvL~~P~I---------------------f~~ 323 (568)
+|.+|++.|.+ .++.++++.+++|++|||+|+++|++|+||+||||+| |+.
T Consensus 407 ~P~~R~~~i~~--------~~~~~~~~~~~~l~~fGi~i~~~~~~V~gRvL~~P~I~y~~~~~~~p~~g~Wn~~~~kf~~ 478 (900)
T PLN03202 407 KPQERMKVLTD--------ALKSSNYDADPMLRSCGISISSQFTQVEGRVLPAPKLKVGNGEDFFPRNGRWNFNNKKLVE 478 (900)
T ss_pred CHHHHHHHHHH--------HHHHhCCCCchHHHHCCcEecCCceEEeEEEcCCceeecCCCcccCCCCCceecCCCEecC
Confidence 99999999988 5666667788999999999999999999999999999 455
Q ss_pred CcccCceEEEEeCCcccHHHHHHHHHHHhhhcCCCCCCCCcccccCccccCCCChHHHHHHHHHHHHhccCCCeEEEEEc
Q 048669 324 AAKIDHWAVANFSGGCDIRSLCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRPCFLLCLL 403 (568)
Q Consensus 324 ~~~l~~W~vv~~~~~~~~~~f~~~l~~~~~~~Gm~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvlvil 403 (568)
++++++|+++++.+.+++++|++.|.+.|+.+||.+..|..+...++.......+++++.+++++++.++..++||||||
T Consensus 479 ~~~l~~W~vv~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~qlv~vIl 558 (900)
T PLN03202 479 PTKIERWAVVNFSARCDIRHLVRDLIKCGEMKGINIEPPFDVFEENPQFRRAPPPVRVEKMFEQIQSKLPGPPQFLLCIL 558 (900)
T ss_pred CCccceEEEEEecCchhHHHHHHHHHHHHHHCCceeCCCccccccccccccccchHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 77899999998876668999999999999999999988865432222222123456799999999988766799999999
Q ss_pred CCCCCchhhhhhhhhcccccCceeeEeeccccChhHHHHHHHHHHhhcCCcceeccccccCCCCCcCCCCEEEEEeeecc
Q 048669 404 PDRKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSH 483 (568)
Q Consensus 404 p~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~k~~~q~~~NI~lKIN~KLGG~n~~l~~~~~~~~p~l~~~~tMivG~DV~H 483 (568)
|+++++++|+.||++||+++||+||||..++.++||++|||||||+||||+||.|.++....+|++.+.+|||||+||+|
T Consensus 559 p~~~~~~~Y~~IK~~~~~~~gV~TQcv~~~~~~~q~~~NIalKiN~KLGG~n~~~~~~~~~~i~~~~~~~tMivG~DVtH 638 (900)
T PLN03202 559 PERKNSDIYGPWKKKNLSEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGLNSLLAIEHSPSIPLVSKVPTIILGMDVSH 638 (900)
T ss_pred cCCCCcchHHHHHHHHhhccCcccEEeCccccchHHHHHHHHHHhhhhCCcceeecccccccCccccCCCeEEEEEEeec
Confidence 97336789999999999999999999987778999999999999999999999997654445788877899999999999
Q ss_pred CCCCCCCCCeEEEEEeeCCCCccceeeEEEEecCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCCCEEEEEec
Q 048669 484 GSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFRS 563 (568)
Q Consensus 484 p~~~~~~~pSiaavVaS~d~~~~t~y~~~~~~Q~~~~Eii~~l~~p~~~~~~~~~~~~~L~~f~~~n~~~lP~~IIiYRD 563 (568)
|+++....|||||||||+|++++++|++.+++|.+++|+|++|..+....++++|++++|+.|++.+++.+|++||||||
T Consensus 639 p~~g~~~~pSiaa~VaS~d~~~~~~y~s~~~~Q~~~~E~i~~l~~~~~~~~~~~m~~~~L~~~~~~~~~~~P~~IiiyRD 718 (900)
T PLN03202 639 GSPGQSDVPSIAAVVSSRQWPLISRYRASVRTQSPKVEMIDSLFKPVGDKDDDGIIRELLLDFYTSSGKRKPEQIIIFRD 718 (900)
T ss_pred CCCCCCCCCceEEEEeccCcccccceeeEEEecCCCceeeeehhccccccchHHHHHHHHHHHHHHcCCCCCceeEEEec
Confidence 99986457999999999996579999999999999999999985433333467899999999998876799999999999
Q ss_pred CCCC
Q 048669 564 TLTW 567 (568)
Q Consensus 564 GVS~ 567 (568)
|||+
T Consensus 719 GVse 722 (900)
T PLN03202 719 GVSE 722 (900)
T ss_pred CCCH
Confidence 9996
No 2
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.7e-84 Score=681.62 Aligned_cols=455 Identities=22% Similarity=0.353 Sum_probs=399.9
Q ss_pred ceeeCcccccc--------------CCCccccCccceeecCCCCCCceEEEEEeCCCCCCccCCCCCCCCCCCCCchhhh
Q 048669 4 SVFIGPEESKR--------------TSKLGPTGEKSLFTISALPHKKMEFLVLLDNPSSYRTTSNDSPDGHGSNNERDRK 69 (568)
Q Consensus 4 ~~~~~p~~~~~--------------~~~~~~DG~~~l~t~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (568)
||+|+|..+.+ ++.+||||. .||++++|.++..+ ....
T Consensus 116 hVef~P~ves~rlR~~~L~~h~~lig~~~~FDG~-iLfl~~k~eq~~te---l~~k------------------------ 167 (845)
T KOG1042|consen 116 HVEFEPDVESRRLREALLYNHTDLIGKGYAFDGT-ILFLKEKFEQKQTE---LVSK------------------------ 167 (845)
T ss_pred EEeeccccccHHHHHHHHHHhHhhhccceeecce-eehhhHHHhhhhhe---eecc------------------------
Confidence 89999999887 368999995 99999999765332 2221
Q ss_pred hhccCCCceEEEEEEEeeccChHHHHHHhcCCCCcChHHHHHHHHHHHhhhhhhcccccchhhhhhcccccceeeecccc
Q 048669 70 RRRVSQSKTFKVEISVAAKIPLQAIAAALHGQESQNSREAFRVLDIILRQHAAKHMIDHRSISIFLATSYRGCFLVRQSF 149 (568)
Q Consensus 70 ~~~~~~~~~~~v~i~~~~~i~~~~l~~~l~g~~~~~~~~~iq~Lniilr~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~f 149 (568)
++++..++|+|++++++...+ +++||++|+|||+.+.. +++.++||+|
T Consensus 168 ---s~~ge~i~I~ik~~~~~~~t~-------------p~~iqv~NlI~RR~~k~----------------L~L~qigRny 215 (845)
T KOG1042|consen 168 ---SRDGELIKITIKLTNELPSTD-------------PQCIQVFNLILRRSMKG----------------LNLTQIGRNY 215 (845)
T ss_pred ---cCCCceEEEEEEEeccccCCC-------------hhHHHHHHHHHHHHHhh----------------ccHHHhhhcc
Confidence 246788999999999999765 88999999999999986 8999999999
Q ss_pred cCCCCCCcccC-CCcEEEeeceEEEEEecCCceeEEEeeee---------------------------------------
Q 048669 150 FQNEPRSFFDL-GGGVLGCWGFHSSFQATQGGLSLNIGVKD--------------------------------------- 189 (568)
Q Consensus 150 F~~~~~~~~~l-~~gle~w~Gf~~Svr~~~~~l~LniDvs~--------------------------------------- 189 (568)
|++... ++| .+.|++||||.+|||.+++.++|+.|++|
T Consensus 216 ynp~~~--i~ip~~km~lwPGy~tSIrq~E~~illctei~hKvmR~ETvy~~m~~~~~~~~~~qe~~~~~~~glivLT~Y 293 (845)
T KOG1042|consen 216 YDPRAK--IEIPEFKMSLWPGYETSIRQHENDILLCTEISHKVMRTETVYDIMRSCQHNTQRFQETVNKNVIGLIVLTRY 293 (845)
T ss_pred CCCCcc--cccccccceecCcchhHHHHhhhceeeehhhhhhHhhhhHHHHHHHHHhhCHHHHHHHHHHHhcceEEEEec
Confidence 998754 777 68999999999999999999999999999
Q ss_pred -------cC--------CCC--CceEEehHHHHHhhcCCcccCCCCCceEEeCCC--------CCCeeEeccceeecCCc
Q 048669 190 -------RN--------DDV--KCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKP--------RKPTYIPIELCSLLSLQ 244 (568)
Q Consensus 190 -------~~--------~~~--~g~~iSv~dYf~~~Y~i~L~~~p~lPll~~g~~--------~~~~ylP~Elc~i~~gQ 244 (568)
+| .+| ++++||+.|||+++|||+|++ -+||+|+...+ ...++|.||||+++|
T Consensus 294 NNktyriddvD~~~tP~stF~k~dgeIs~veYyk~qYni~I~d-l~QPlliS~~k~K~~~g~~~q~~~lIPELc~~TG-- 370 (845)
T KOG1042|consen 294 NNKTYRIDDVDFSQTPLSTFKKDDGEISFVEYYKKQYNIEITD-LNQPLLISEPKDKRPKGEPPQLAMLIPELCFLTG-- 370 (845)
T ss_pred CCceeeeeccccCcCccceeeecCceeeHhHHHHHhcCeEEee-CCcceEeccCcccCCCCCCccceeeehhhhhccC--
Confidence 11 122 567999999999999999999 99999997432 346899999999999
Q ss_pred cccccCCHHHHH------HHHHHhcCChHHHHHHhhccchhHHHHHHHhcCCCCcccccccCeeecCcceEeeeEecCCC
Q 048669 245 RYTKALTVFQRS------ALVEKSQQKPQEKMKIITDDSMEHYAQVMRSNKNDSEPMLRSCGISINSRFAQVEGRILSAP 318 (568)
Q Consensus 245 ~~~~kL~~~q~~------~mi~~t~~~P~~R~~~I~~~~~~~f~~~l~~~~~~~~~~l~~fGl~i~~~~~~V~gRvL~~P 318 (568)
|||++++ +|.++|+..|++|..++.. |++.++... +..+.|+.|||+++++.++|+|||||+.
T Consensus 371 -----Ltd~mr~dF~~Mkama~hTRlsP~qR~~rlr~-----li~~l~~n~-~~~~~lr~Wgi~ld~~l~~v~gRil~sE 439 (845)
T KOG1042|consen 371 -----LTDEMRSDFQLMKAMAEHTRLSPQQRQDRLRR-----LIDRLQKNP-NSVEELRDWGISLDSNLAEVQGRILPSE 439 (845)
T ss_pred -----CcHHHHhhHHHHHHHHHHhcCCHHHHHHHHHH-----HHHHHhcCh-HHHHHHHhcCcccCcchhhccceecCcc
Confidence 9999986 8999999999999999998 777777653 5667899999999999999999999999
Q ss_pred ee------------------------eccCcccCceEEEEeCCcc-cHHHHHHHHHHHhhhcCCCCCCCCcccccCcccc
Q 048669 319 RI------------------------FVPAAKIDHWAVANFSGGC-DIRSLCRDLIRFGEMKRISTSPPLNVFEENPQFR 373 (568)
Q Consensus 319 ~I------------------------f~~~~~l~~W~vv~~~~~~-~~~~f~~~l~~~~~~~Gm~~~~p~~v~~~~~~~~ 373 (568)
.| ++.+..+.+|++++..+.. .++.|+++|.+++..+||++..|..+.+.
T Consensus 440 kI~~~~~~~~~~~~~ADWsr~~R~c~i~~~~~l~~W~vi~p~r~~~~a~~fi~~l~r~a~~mgm~i~~P~~v~i~----- 514 (845)
T KOG1042|consen 440 KILFGNQKVPYEGKQADWSREFRTCGILRGSNLDNWAVIYPGRNNSEAQEFINMLRRVASSMGMQIREPICVEIK----- 514 (845)
T ss_pred ceecCCcccCCCcchhhhhhhcccccccccCCCcceEEEecCccHHHHHHHHHHHHHhccccceecCCceEEEeC-----
Confidence 99 3345578999999988764 79999999999999999999999876542
Q ss_pred CCCChHHHHHHHHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecccc-C----hhHHHHHHHHHH
Q 048669 374 RAPAPVRVDRMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPTKV-N----EQYLMNVLLKIN 448 (568)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~k~-~----~q~~~NI~lKIN 448 (568)
+++.+.|++.+.+....++|+|+||+|+ .+++.|++||++++++.+||||||..++. + .+++++|+||||
T Consensus 515 ----ddr~~tYvraiqq~v~~D~qmvvcil~~-~nk~~Y~sIKK~~cvd~pvPsQ~V~lrTl~~~~~lmSIAtKI~lQmn 589 (845)
T KOG1042|consen 515 ----DDRPGTYVRAIQQVVGADIQMVVCILPS-DNKTRYDSIKKYLCVDCPVPSQCVNLRTLAKRSKLMSIATKIALQMN 589 (845)
T ss_pred ----CCChHHHHHHHHHhccCCceEEEEEecC-CchhhHHHHHhheeccCCCccceEEEEeecCcchhHHHHHHHHHHHh
Confidence 3567889999998888889999999999 88999999999999999999999998753 2 347899999999
Q ss_pred hhcCCcceeccccccCCCCCcCCCCEEEEEeeeccCCCCCCCCCeEEEEEeeCCCCccceeeEEEEecCCccccccccCC
Q 048669 449 AKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFK 528 (568)
Q Consensus 449 ~KLGG~n~~l~~~~~~~~p~l~~~~tMivG~DV~Hp~~~~~~~pSiaavVaS~d~~~~t~y~~~~~~Q~~~~Eii~~l~~ 528 (568)
|||||..|.|+ ||+ +.+|+||+||+|.+.. +..|++|+|||+| +.+|+|+|.+..|...+|+.+.|+.
T Consensus 590 CKlGg~lW~V~------IPL---k~lMiVG~Dv~hd~~~--k~rsvga~VAs~n-~~~tr~fS~v~~~~~~qel~d~L~~ 657 (845)
T KOG1042|consen 590 CKLGGELWKVE------IPL---KGLMIVGFDVYHDPTL--KGRSVGAFVASMN-NDFTRWFSRVIEQENGQELADNLKV 657 (845)
T ss_pred hhhcCcceEEe------eec---ccceEEEEEeecCccc--cCceEEEEEEeec-cchhhhhhheecccCHHHHHHHHHH
Confidence 99999999996 787 7899999999998764 5789999999999 7999999999999999999999874
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCCCCCEEEEEecCCC
Q 048669 529 PLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFRSTLT 566 (568)
Q Consensus 529 p~~~~~~~~~~~~~L~~f~~~n~~~lP~~IIiYRDGVS 566 (568)
++..||++|++.| ..||+|||+||||||
T Consensus 658 ---------~~~~ALr~y~~~n-~~LPsRIi~YRDGVg 685 (845)
T KOG1042|consen 658 ---------FLAKALRQYYEVN-RTLPSRIIVYRDGVG 685 (845)
T ss_pred ---------HHHHHHHHHHHhc-ccCCceEEEEecCCC
Confidence 9999999999998 699999999999998
No 3
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.1e-81 Score=717.27 Aligned_cols=478 Identities=35% Similarity=0.552 Sum_probs=409.6
Q ss_pred CCccccCccceeecCCCCCCceEEEEEeCCCCCCccCCCCCCCCCCCCCchhhhhhccCCCceEEEEEEEeeccChHHHH
Q 048669 16 SKLGPTGEKSLFTISALPHKKMEFLVLLDNPSSYRTTSNDSPDGHGSNNERDRKRRRVSQSKTFKVEISVAAKIPLQAIA 95 (568)
Q Consensus 16 ~~~~~DG~~~l~t~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~l~ 95 (568)
..++|||+++|||...++....++++..... .....|+++|+++.++.+..+.
T Consensus 114 ~~~~YDg~~~lyt~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~ik~~~~~~~~~~~ 166 (876)
T KOG1041|consen 114 GGPAYDGQKTLYTKLELPEGVVTLDFDVISP---------------------------KEWKKFKVSIKKVSEVVLTKLN 166 (876)
T ss_pred CcccccCCceeEeccccccccceEEEEecCC---------------------------CCCcceEEEEEecccccccCcc
Confidence 5667999999999777774233333322221 0111199999999999999999
Q ss_pred HHhcCCCCcChHHHHHHHHHHHhhhhhhcccccchhhhhhcccccceeeecccccCCCCCCcccCCCcEEEeeceEEEEE
Q 048669 96 AALHGQESQNSREAFRVLDIILRQHAAKHMIDHRSISIFLATSYRGCFLVRQSFFQNEPRSFFDLGGGVLGCWGFHSSFQ 175 (568)
Q Consensus 96 ~~l~g~~~~~~~~~iq~Lniilr~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~fF~~~~~~~~~l~~gle~w~Gf~~Svr 175 (568)
.++.+.....+.+++|+|++++++.++. ..+..+|++||.........+++|.|+|.||++|+|
T Consensus 167 ~~~~~~~~~~~~~~~~~ld~~~~~~~s~----------------~~~~~~~~sff~~~~~~~~~l~~g~e~~~Gf~~s~r 230 (876)
T KOG1041|consen 167 GFIYTRGENAPRDANQTLDVVLREIATS----------------QGLNNVGYSFFGNDTREPAKLGGGVEIWEGFHKSIR 230 (876)
T ss_pred ccccCccccCchhHHHHHHHHHHhhhch----------------hcccccchheecCCCCCccccCCCceeeeeeeeeee
Confidence 9999887788999999999999999986 458999999999743334558999999999999999
Q ss_pred ecCCceeEEEeeee-------------------c-------------------------------------------CCC
Q 048669 176 ATQGGLSLNIGVKD-------------------R-------------------------------------------NDD 193 (568)
Q Consensus 176 ~~~~~l~LniDvs~-------------------~-------------------------------------------~~~ 193 (568)
+++++++||+|+++ . +..
T Consensus 231 ~~~~~~~l~id~~~~~F~k~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lkgL~v~~~h~~~~r~~~i~~l~~~~a~~~~ 310 (876)
T KOG1041|consen 231 PTQGGLSLNIDVKTTAFYKGTPVIEFLKKILEIKTRAFHKDRPLDIKKALKGLKVYVTHGKRKRKIKIMGLSKKPAKNTT 310 (876)
T ss_pred eccCceEEeeeeeeeeeecCcchHHHHHhhhcCcccccccccchhHHHHhhCcEEEEecccCcceEEEecccCCcccCce
Confidence 99999999999998 0 001
Q ss_pred C---C--ceEEehHHHHHhhcCCcccCCCCCceEEeCCCCCCeeEeccceeecCCccccc-cCCHHHHHHHHHHhcCChH
Q 048669 194 V---K--CVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTK-ALTVFQRSALVEKSQQKPQ 267 (568)
Q Consensus 194 ~---~--g~~iSv~dYf~~~Y~i~L~~~p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~-kL~~~q~~~mi~~t~~~P~ 267 (568)
| + +.++||+|||+++||++|+| |++|||++|..++..|+|||||.|.+|||+.+ +|++.|+++|++.+++.|+
T Consensus 311 F~l~~~~~~~~tV~~Yf~~ky~~~Lky-p~LPcv~v~~~~~~~~~PmElc~i~~gQr~~k~kl~~~q~~~m~k~~~~~P~ 389 (876)
T KOG1041|consen 311 FELKDKKGREITVADYFLEKYNITLKY-PDLPCVVVKRPKRENFYPMELCNIVPGQRITKEKLTPNQQSAMIKASAVKPD 389 (876)
T ss_pred eeccCCCceEEeHHHHHHHhcCccccC-CCCccEeecCCCCCcccchhheecccCceeecccCCHHHHHHhhhhhcCCHH
Confidence 2 1 68899999999999999999 99999999999999999999999999999998 9999999999999999999
Q ss_pred HHHHHhhccchhHHHHHHHhcCCCCcccccccCeeecCcceEeeeEecCCCee----------------------eccCc
Q 048669 268 EKMKIITDDSMEHYAQVMRSNKNDSEPMLRSCGISINSRFAQVEGRILSAPRI----------------------FVPAA 325 (568)
Q Consensus 268 ~R~~~I~~~~~~~f~~~l~~~~~~~~~~l~~fGl~i~~~~~~V~gRvL~~P~I----------------------f~~~~ 325 (568)
+|.+.|.. .++..++..+++|++|||.|.++|+.|+||+||||.| |+.|+
T Consensus 390 ~R~~~i~~--------~~~~~~~~~d~~l~~fGi~i~~~~~~v~grvL~~P~L~~~~~~~~~~p~~g~~~~~~k~~~~~~ 461 (876)
T KOG1041|consen 390 QRQKLIKK--------VLKSSLKLSNPYLKEFGIIVVSEPTQVEGRVLPPPKLKFGGNEMPKNPTPGTWFMRNKKFVKPA 461 (876)
T ss_pred HHHHHHHH--------HHHHhccccchhHHhcCeEEecccccccccccCCceeeccCCCCccCCCcCccccccCcccccc
Confidence 99999999 7888777779999999999999999999999999999 55678
Q ss_pred ccCceEEEEeCCcccH--HHHHHHHHHHhhhcCCCCCCCCcccccCccccCCCChHHHHHHHHHHHHhcc--CCCeEEEE
Q 048669 326 KIDHWAVANFSGGCDI--RSLCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFE--KRPCFLLC 401 (568)
Q Consensus 326 ~l~~W~vv~~~~~~~~--~~f~~~l~~~~~~~Gm~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lvlv 401 (568)
.+..|+|++|...++. +.|+++|.+.|++.||.+..|. .+.. ...+++..+..++...+ ..+++|+|
T Consensus 462 ~i~~wavv~f~~~~~~~~~~f~~~L~~~c~~~Gm~i~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~~li~~ 532 (876)
T KOG1041|consen 462 KIKSWAVVNFSNSETLRQKQFVDELIKICKDKGMEIKRPR--KWAP-------TEESLEDMITEKSSMEKAAAGVQLVFI 532 (876)
T ss_pred eEEEEEEEEecccccccHHHHHHHHHHHHHHcCccccccc--ccCc-------ccchhHHHHHHHHhhhccCCCceEEEE
Confidence 8999999999876422 6999999999999999996533 2211 22567777777666543 56899999
Q ss_pred EcCCCCCchhhhhhhhhcccccCceeeEeecc---ccChhHHHHHHHHHHhhcCCcceeccccccCCCCCcCCCCEEEEE
Q 048669 402 LLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT---KVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFG 478 (568)
Q Consensus 402 ilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~---k~~~q~~~NI~lKIN~KLGG~n~~l~~~~~~~~p~l~~~~tMivG 478 (568)
|+++ +..++|+.+|++++...||+|||++.+ +..+||++||+||||+||||+|+.+..+....+| ....+|||||
T Consensus 533 I~~~-k~~~vy~~lK~~e~t~~gi~tQc~~~~~~~k~~~qtl~Nl~lKiN~KlGG~N~~l~~~~~~~~~-~~~~ptl~IG 610 (876)
T KOG1041|consen 533 ILPE-KNPDVHDELKYIEETVGGLTTQCIRPTTAKKMSPQTLANLILKINVKLGGLNYVLVSPRSSRGP-KLDSPTLFIG 610 (876)
T ss_pred EECC-CCcchhHHHHHHHHHhcCceeEEeecchhcccchHHHHHHHHHHhhccCceeeEEecccccCcc-cCCCCeEEEE
Confidence 9999 888999999999999999999999986 4579999999999999999999988754332333 3458999999
Q ss_pred eeeccCCCCCCC--CCeEEEEEeeCCCCccceeeEEEEecCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCCC
Q 048669 479 MDVSHGSPGHSN--VPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPS 556 (568)
Q Consensus 479 ~DV~Hp~~~~~~--~pSiaavVaS~d~~~~t~y~~~~~~Q~~~~Eii~~l~~p~~~~~~~~~~~~~L~~f~~~n~~~lP~ 556 (568)
+|||||++++.. .|||||||||+|| +.++|.|.+++|.+++|+|+++. +|+.++|..|++++ +.+|+
T Consensus 611 ~dVsHp~~~~~~~~~PSiagvv~s~~~-~~~~y~g~~~~Q~~r~e~i~~~~---------~~~~~~l~~f~~~t-~~~P~ 679 (876)
T KOG1041|consen 611 FDVSHPAAGTSFDGNPSIVGVVYNLDW-HPQKFAGFVRFQKSRQEVIQDLG---------EMIRELLRSFRKST-RKLPD 679 (876)
T ss_pred EeeeCCCcCCCcCCCccEEEEEecccc-cchhhcceEEEecCChhhhcchH---------HHHHHHHHHHHHhc-cCCCc
Confidence 999999998755 5999999999998 99999999999999999999954 69999999999997 67999
Q ss_pred EEEEEecCCCC
Q 048669 557 QIIIFRSTLTW 567 (568)
Q Consensus 557 ~IIiYRDGVS~ 567 (568)
||||||||||+
T Consensus 680 ~IIiyRdGvSE 690 (876)
T KOG1041|consen 680 RIVIYRDGVSE 690 (876)
T ss_pred eEEEEecCCcc
Confidence 99999999997
No 4
>cd04657 Piwi_ago-like Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=2.9e-51 Score=441.17 Aligned_cols=248 Identities=41% Similarity=0.673 Sum_probs=216.0
Q ss_pred ccccccCeeecCcceEeeeEecCCCee----------------------eccCcccCceEEEEeCCc-------ccHHHH
Q 048669 294 PMLRSCGISINSRFAQVEGRILSAPRI----------------------FVPAAKIDHWAVANFSGG-------CDIRSL 344 (568)
Q Consensus 294 ~~l~~fGl~i~~~~~~V~gRvL~~P~I----------------------f~~~~~l~~W~vv~~~~~-------~~~~~f 344 (568)
++|++|||+|+++|++|+||+|+||.| |+.++++++|+++++... .++++|
T Consensus 1 ~~l~~fGi~i~~~~~~v~grvL~~P~i~y~~~~~~~~~~~g~W~~~~~~f~~~~~~~~W~vi~~~~~~~~~~~~~~~~~F 80 (426)
T cd04657 1 PYLKEFGISVSKEMITVPGRVLPPPKLKYGDSSKTVPPRNGSWNLRGKKFLEGGPIRSWAVLNFAGPRRSREERADLRNF 80 (426)
T ss_pred ChhHhCCCEecCCeeEEeEEEcCCceeeccCCccccCCCCCceeecCcccCCCcccceEEEEEecCccccchhHHHHHHH
Confidence 468999999999999999999999999 445677899999999763 158999
Q ss_pred HHHHHHHhhhcCCCCCCCCcccccCccccCCCChHHHHHHHHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccC
Q 048669 345 CRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFG 424 (568)
Q Consensus 345 ~~~l~~~~~~~Gm~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~G 424 (568)
++.|.+.|+.+||++. . .+. ..++.++.+++.+++.....++|||||+|+ +++++|+.||++||.+.|
T Consensus 81 ~~~l~~~~~~~g~~~~-~-~~~---------~~~~~~~~~~~~~~~~~~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~~g 148 (426)
T cd04657 81 VDQLVKTVIGAGINIT-T-AIA---------SVEGRVEELFAKLKQAKGEGPQLVLVILPK-KDSDIYGRIKRLADTELG 148 (426)
T ss_pred HHHHHHHHHhcCCccc-c-ccc---------ccchhHHHHHHHHHhhccCCCCEEEEEEcC-CCcchHHHHHHHHhhcCC
Confidence 9999999999999986 1 111 124567888888888765579999999998 778999999999999999
Q ss_pred ceeeEeeccc----cChhHHHHHHHHHHhhcCCcceeccccccCCCCCcCCCCEEEEEeeeccCCCCC-CCCCeEEEEEe
Q 048669 425 IFNQCLAPTK----VNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGH-SNVPSVAAVVS 499 (568)
Q Consensus 425 V~TQcv~~~k----~~~q~~~NI~lKIN~KLGG~n~~l~~~~~~~~p~l~~~~tMivG~DV~Hp~~~~-~~~pSiaavVa 499 (568)
|+||||..++ .++||+.||+||||+||||+||.++.. ..+++...+|||||+||+||++++ ...||||||||
T Consensus 149 I~TQci~~~~~~k~~~~~~~~NI~lKin~KlGG~n~~v~~~---~~~~~~~~~tmiiG~Dv~H~~~~~~~~~pSiaa~Va 225 (426)
T cd04657 149 IHTQCVLAKKVTKKGNPQYFANVALKINLKLGGINHSLEPD---IRPLLTKEPTMVLGADVTHPSPGDPAGAPSIAAVVA 225 (426)
T ss_pred cccEEEcccccccccchHHHHHHHHHHHHhcCCEeeecccc---cccccCCCCEEEEEEeeecCCCCCCCCCCcEEEEEE
Confidence 9999999863 579999999999999999999999753 223445589999999999999875 45799999999
Q ss_pred eCCCCccceeeEEEEecCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCCCEEEEEecCCCC
Q 048669 500 SRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFRSTLTW 567 (568)
Q Consensus 500 S~d~~~~t~y~~~~~~Q~~~~Eii~~l~~p~~~~~~~~~~~~~L~~f~~~n~~~lP~~IIiYRDGVS~ 567 (568)
|+| .++++|++.+++|.+++|+|++|. +|++++|++|++.| +.+|++|||||||||+
T Consensus 226 s~d-~~~~~y~~~~~~q~~~~e~i~~l~---------~~~~~~l~~~~~~~-~~~P~~IiiyRDGvse 282 (426)
T cd04657 226 SVD-WHLAQYPASVRLQSHRQEIIDDLE---------SMVRELLRAFKKAT-GKLPERIIYYRDGVSE 282 (426)
T ss_pred ecC-CcccccceEEEEeCCCcchHHHHH---------HHHHHHHHHHHHHh-CCCCceEEEEEcCcCH
Confidence 999 599999999999999999999876 59999999999987 6899999999999995
No 5
>cd04658 Piwi_piwi-like_Euk Piwi_piwi-like_Euk: PIWI domain, Piwi-like subfamily found in eukaryotes. This domain is found in Piwi and closely related proteins, where it is believed to perform a crucial role in germline cells, via RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The mechanism in Piwi is believed to be similar to that in Argonaute, the central component of the RNA-induced silencing complex (RISC). The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing.
Probab=100.00 E-value=5.9e-51 Score=442.30 Aligned_cols=277 Identities=25% Similarity=0.385 Sum_probs=235.9
Q ss_pred HHHHHHHHhcCChHHHHHHhhccchhHHHHHHHhcCCCCc--ccccccCeeecCcceEeeeEecCCCee-----------
Q 048669 254 QRSALVEKSQQKPQEKMKIITDDSMEHYAQVMRSNKNDSE--PMLRSCGISINSRFAQVEGRILSAPRI----------- 320 (568)
Q Consensus 254 q~~~mi~~t~~~P~~R~~~I~~~~~~~f~~~l~~~~~~~~--~~l~~fGl~i~~~~~~V~gRvL~~P~I----------- 320 (568)
.+.+|+++|+.+|.+|++.|.+ | ++.+..+.+ ++|++|||+|++++++|+||+|+||.|
T Consensus 2 ~m~~l~~~~~~~P~eR~~~i~~-----~---~~~~~~~~~~~~~l~~~gi~i~~~~~~v~~rvL~~P~i~~~~~~~~~~~ 73 (448)
T cd04658 2 LMKELAEHTKLNPKERYDTIRQ-----F---IQRIQKNPSVQELLKKWGIELDSNPLKIQGRVLPPEQIIMGNVFVYANS 73 (448)
T ss_pred hHHHHHHHhCCCHHHHHHHHHH-----H---HHHhcCCCchHHHHHHCCeEEcCCceEEeeEEeCCCeEEeCCCccCCCC
Confidence 3578999999999999999999 4 444433333 689999999999999999999999999
Q ss_pred ------------eccCcccCceEEEEeCCc-ccHHHHHHHHHHHhhhcCCCCCCCCcccccCccccCCCChHHHHHHHHH
Q 048669 321 ------------FVPAAKIDHWAVANFSGG-CDIRSLCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQ 387 (568)
Q Consensus 321 ------------f~~~~~l~~W~vv~~~~~-~~~~~f~~~l~~~~~~~Gm~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~ 387 (568)
|+.+.++++|+++++..+ ..+++|++.|.+.++.+||.+.+|..+... .++.+.+++.
T Consensus 74 ~~~w~~~~~~~~~~~~~~~~~W~vi~~~~~~~~~~~f~~~l~~~~~~~G~~~~~P~~~~~~---------~~~~~~~~~~ 144 (448)
T cd04658 74 NADWKREIRNQPLYDAVNLNNWVLIYPSRDQREAESFLQTLKQVAGPMGIQISPPKIIKVK---------DDRIETYIRA 144 (448)
T ss_pred CCCcchhhcCCcccCCcccCeEEEEEecCCHHHHHHHHHHHHHHHHHcCCccCCCeEEEeC---------CCCHHHHHHH
Confidence 345667899999998754 479999999999999999999888754331 1235567777
Q ss_pred HHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeeccc-----cChhHHHHHHHHHHhhcCCcceeccccc
Q 048669 388 MKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPTK-----VNEQYLMNVLLKINAKLGGLNSLLAIEQ 462 (568)
Q Consensus 388 ~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~k-----~~~q~~~NI~lKIN~KLGG~n~~l~~~~ 462 (568)
+++....+++|+|||+|+ +.+++|+.||++|+.+.||+||||..++ ...++++||+||||+||||+||.+...
T Consensus 145 l~~~~~~~~~lvvvilp~-~~~~~Y~~iK~~~~~~~gI~tQ~i~~~t~~~~~~~~~~~~ni~lkinaKlGG~~w~l~~~- 222 (448)
T cd04658 145 LKDAFRSDPQLVVIILPG-NKKDLYDAIKKFCCVECPVPSQVITSRTLKKKKNLRSIASKIALQINAKLGGIPWTVEIP- 222 (448)
T ss_pred HHHhhcCCCcEEEEEECC-CCchhHHHHHHHhhcccCcCCEEEehhhcccccccHHHHHHHHHHHHHHhCCcceEeccC-
Confidence 777665679999999998 6678999999999999999999999853 245789999999999999999999732
Q ss_pred cCCCCCcCCCCEEEEEeeeccCCCCCCCCCeEEEEEeeCCCCccceeeEEEEecCCcccc-ccccCCCCCCCChHHHHHH
Q 048669 463 SKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEM-IDSLFKPLPNKDDAGIVRE 541 (568)
Q Consensus 463 ~~~~p~l~~~~tMivG~DV~Hp~~~~~~~pSiaavVaS~d~~~~t~y~~~~~~Q~~~~Ei-i~~l~~p~~~~~~~~~~~~ 541 (568)
.....+|||||+||+||+++ ..||+||+|||+| .++++|++.++.|..++|+ +++|. +|+++
T Consensus 223 -----~~~~~~tmiiGidv~h~~~~--~~~Si~a~vas~~-~~~~~~~~~~~~q~~~~e~~~~~l~---------~~~~~ 285 (448)
T cd04658 223 -----PFILKNTMIVGIDVYHDTIT--KKKSVVGFVASLN-KSITKWFSKYISQVRGQEEIIDSLG---------KSMKK 285 (448)
T ss_pred -----CCCCCCeEEEEEeeecCCCC--CCCcEEEEEEEcC-CCCceEeeEEEEeCCCceeeHHHHH---------HHHHH
Confidence 12347899999999999874 4699999999999 6999999999999999998 77665 69999
Q ss_pred HHHHHHHHhCCCCCCEEEEEecCCCC
Q 048669 542 LLVDFYKSSGQTKPSQIIIFRSTLTW 567 (568)
Q Consensus 542 ~L~~f~~~n~~~lP~~IIiYRDGVS~ 567 (568)
+|..|++.| |.+|++|||||||||+
T Consensus 286 ~l~~y~~~~-~~~P~~IiiyRdGvse 310 (448)
T cd04658 286 ALKAYKKEN-KKLPSRIIIYRDGVGD 310 (448)
T ss_pred HHHHHHHHh-CCCCceEEEEecCCCH
Confidence 999999987 7999999999999984
No 6
>cd02826 Piwi-like Piwi-like: PIWI domain. Domain found in proteins involved in RNA silencing. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=100.00 E-value=9.2e-43 Score=371.88 Aligned_cols=233 Identities=23% Similarity=0.315 Sum_probs=188.0
Q ss_pred ceEeeeEecCCCee------------eccCccc-CceEEEEeCCcccHHHHHHHHHHHhhhcCCCCCC-CCcccccCccc
Q 048669 307 FAQVEGRILSAPRI------------FVPAAKI-DHWAVANFSGGCDIRSLCRDLIRFGEMKRISTSP-PLNVFEENPQF 372 (568)
Q Consensus 307 ~~~V~gRvL~~P~I------------f~~~~~l-~~W~vv~~~~~~~~~~f~~~l~~~~~~~Gm~~~~-p~~v~~~~~~~ 372 (568)
+++|+||+||||.| |+.++.+ .+|+++++.+. ..++|++.|.+.++++||++.. |.....+...
T Consensus 2 ~~~v~grvL~~p~i~~~~~w~~~~~~f~~~~~~~~~W~vi~~~~~-~~~~f~~~l~~~~~~~G~~~~~~~~~~~~~~~~- 79 (393)
T cd02826 2 PLILKGRVLPKPQILFKNKFLRNIGPFEKPAKITNPVAVIAFRNE-EVDDLVKRLADACRQLGMKIKEIPIVSWIEDLN- 79 (393)
T ss_pred ceEEeeEecCCCceEecCCccccCCeeCCCCEeCCeEEEEEcccH-HHHHHHHHHHHHHHhCCCccCCCCCcceeeccc-
Confidence 67999999999999 4456778 99999998643 4668999999999999999987 5443222110
Q ss_pred cCCCChHHHHHHHHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeeccc-----cChhHHHHHHHHH
Q 048669 373 RRAPAPVRVDRMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPTK-----VNEQYLMNVLLKI 447 (568)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~k-----~~~q~~~NI~lKI 447 (568)
...+.+...++ +..+.+++|||||+|+ +++++|+.||++|+.. ||+||||..++ .+++|++||+|||
T Consensus 80 ---~~~~~~~~~~~---~~~~~~~~lv~~ilp~-~~~~~Y~~iK~~~~~~-gI~tQ~i~~~t~~~~~~~~~~~~Ni~lki 151 (393)
T cd02826 80 ---NSFKDLKSVFK---NAIKAGVQLVIFILKE-KKPPLHDEIKRLEAKS-DIPSQVIQLKTAKKMRRLKQTLDNLLRKV 151 (393)
T ss_pred ---ccHHHHHHHHH---HHhhcCCCEEEEEEcC-CCccHHHHHHHHHhcc-CCceEEEehhhhccccccHHHHHHHHHHH
Confidence 01233444444 4333479999999999 7789999999999988 99999998752 5689999999999
Q ss_pred HhhcCCcceeccccccCCCCCcCCCCEEEEEeeeccCCCC-CCCCCeEEEEEeeCCCCccceeeEEEEecCCcccccccc
Q 048669 448 NAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPG-HSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSL 526 (568)
Q Consensus 448 N~KLGG~n~~l~~~~~~~~p~l~~~~tMivG~DV~Hp~~~-~~~~pSiaavVaS~d~~~~t~y~~~~~~Q~~~~Eii~~l 526 (568)
|+||||+||.|+.. .+...+|||||+||+||+++ ....||++|||||+| .+ +.|.+.++.|..++|++++|
T Consensus 152 n~KlGG~~~~l~~~------~~~~~~tmiiGiDv~h~~~~~~~~~~si~~~vas~~-~~-~~~g~~~~~~~~~~~~~~~l 223 (393)
T cd02826 152 NSKLGGINYILDSP------VKLFKSDIFIGFDVSHPDRRTVNGGPSAVGFAANLS-NH-TFLGGFLYVQPSREVKLQDL 223 (393)
T ss_pred hhhhCCeeeEeccC------CCCCCCEEEEEEEeeCCCCCCCCCCCcEEEEEeecC-Cc-cccceEEEEecCccchHHHH
Confidence 99999999999742 12347899999999999885 234799999999999 35 55556778898888988776
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHhCCC-CCCEEEEEecCCCC
Q 048669 527 FKPLPNKDDAGIVRELLVDFYKSSGQT-KPSQIIIFRSTLTW 567 (568)
Q Consensus 527 ~~p~~~~~~~~~~~~~L~~f~~~n~~~-lP~~IIiYRDGVS~ 567 (568)
. +|++++|..|+++| +. +|++|||||||||+
T Consensus 224 ~---------~~~~~~L~~y~~~~-~~~~P~~IiiyRDGvse 255 (393)
T cd02826 224 G---------EVIKKCLDGFKKST-GEGLPEKIVIYRDGVSE 255 (393)
T ss_pred H---------HHHHHHHHHHHHHc-CCCCcceeEEEecCCCH
Confidence 5 59999999999987 68 99999999999995
No 7
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=99.97 E-value=1.1e-31 Score=277.44 Aligned_cols=154 Identities=41% Similarity=0.609 Sum_probs=130.3
Q ss_pred EEEEEcCCCCCchhhhhhhhhcccccCceeeEeeccc---c--ChhHHHHHHHHHHhhcCCcc-eeccccccCCCCCcCC
Q 048669 398 FLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPTK---V--NEQYLMNVLLKINAKLGGLN-SLLAIEQSKNLPLVSK 471 (568)
Q Consensus 398 lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~k---~--~~q~~~NI~lKIN~KLGG~n-~~l~~~~~~~~p~l~~ 471 (568)
+|+||+|+ ++.+.|..||++++.+.||+||||..++ . ..+++.||+||||+||||+| |.++.. ...++
T Consensus 1 ~i~~ii~~-~~~~~Y~~iKk~~~~~~gi~tQ~i~~~~~~~~~~~~~~~~ni~lkinaKlGG~n~~~~~~~--~~~~~--- 74 (302)
T PF02171_consen 1 LIVVIIPD-KNSDNYHAIKKYLERKLGIPTQCILSKTLRKKNKSKQILNNIALKINAKLGGINPWLLDSP--PSIDL--- 74 (302)
T ss_dssp -EEEEESS-SSHHHHHHHHHHHHTTTTCEEEEEEHHHHHTSTHHHHHHHHHHHHHHHHTTTBSEEECSCS--SGSSE---
T ss_pred CEEEEEeC-CChhHHHHHHHHHccCCCcccEEEccCcccccchHHHHHHHHHHHHHHhCCCeeeeecccc--ccccc---
Confidence 58999999 7889999999999999999999999852 3 36899999999999999995 555421 11122
Q ss_pred CCEEEEEeeeccCCCCCCCCCeEEEEEeeCCCCccceeeEEEEecCCccccccccCCCCCCCChHHHHHHHHHHHHHHhC
Q 048669 472 VPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSG 551 (568)
Q Consensus 472 ~~tMivG~DV~Hp~~~~~~~pSiaavVaS~d~~~~t~y~~~~~~Q~~~~Eii~~l~~p~~~~~~~~~~~~~L~~f~~~n~ 551 (568)
.+|||||+||+|++++....||++|+|+|+| ++.++|.+.+++|..++|++++|. ++++++|+.|++.|+
T Consensus 75 ~~~miIGidv~h~~~~~~~~~sv~g~~~s~~-~~~~~~~~~~~~~~~~~e~~~~l~---------~~~~~~L~~~~~~~~ 144 (302)
T PF02171_consen 75 KNTMIIGIDVSHPSPGSDKNPSVVGFVASFD-SDGSKYFSSVRFQDSGQEIIDNLE---------EIIKEALKEFKKNNG 144 (302)
T ss_dssp SEEEEEEEEEEEESSTCTCSCEEEEEEEEES-TTTCEEEEEEEEECTTCCCHHHHH---------HHHHHHHHHHHHTTT
T ss_pred CceEEEEEEEEecCcccCCcceeeEEEEecc-CccccccceeEEeccchhhhcchh---------hHHHHHHHHHHHHcC
Confidence 6899999999999987545799999999999 699999999999999999999876 599999999999874
Q ss_pred CCCCCEEEEEecCCCC
Q 048669 552 QTKPSQIIIFRSTLTW 567 (568)
Q Consensus 552 ~~lP~~IIiYRDGVS~ 567 (568)
+.+|++|||||||||+
T Consensus 145 ~~~P~~IiiyRdGvse 160 (302)
T PF02171_consen 145 KWLPERIIIYRDGVSE 160 (302)
T ss_dssp T-TTSEEEEEEES--G
T ss_pred CCCCceEEEEEcccCH
Confidence 3399999999999985
No 8
>cd04659 Piwi_piwi-like_ProArk Piwi_piwi-like_ProArk: PIWI domain, Piwi-like subfamily found in Archaea and Bacteria. RNA silencing refers to a group of related gene-silencing mechanisms mediated by short RNA molecules, including siRNAs, miRNAs, and heterochromatin-related guide RNAs. The central component of the RNA-induced silencing complex (RISC) and related complexes is Argonaute. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the 5' anchoring of the guide RNA and the other, the catalytic site for slicing. This domain is also found in closely related proteins, including the Piwi subfamily, where it is believed to perform a crucial role in germline cells, via a similar mechanism.
Probab=99.88 E-value=1.4e-22 Score=217.74 Aligned_cols=165 Identities=18% Similarity=0.235 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHhccCCCeEEEEEcCCCCC------chhhhhhhhhcccccCceeeEeeccc-----cChhHHHHHHHHHH
Q 048669 380 RVDRMFEQMKQKFEKRPCFLLCLLPDRKD------SDLYGSWKRKTLSEFGIFNQCLAPTK-----VNEQYLMNVLLKIN 448 (568)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~lvlvilp~~~~------~~~Y~~IK~~~d~~~GV~TQcv~~~k-----~~~q~~~NI~lKIN 448 (568)
.+...++...+.....++++||++|+ +. .++|..||+++ .+.||+||||..++ ...+++.||++|||
T Consensus 95 ~~~~a~~~~~~~~~~~~~~~lvilP~-~~~~~~~~~~~Y~~iK~~~-~~~giptQ~v~~~tl~~~~~~~~~~~nial~i~ 172 (404)
T cd04659 95 AIIEAVDLALSESSQGVDVVIVVLPE-DLKELPEEFDLYDRLKAKL-LRLGIPTQFVREDTLKNRQDLAYVAWNLALALY 172 (404)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEeCH-HHhhcccccCHHHHHHHHH-HhcCCceEEeeHHHcCccccHHHHHHHHHHHHH
Confidence 33344444333323468999999998 54 78999999997 68999999998753 24678999999999
Q ss_pred hhcCCcceeccccccCCCCCcCCCCEEEEEeeeccCCCCCCCCCeEEEEEeeCCCCccceeeEEEEecCCccccccccCC
Q 048669 449 AKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFK 528 (568)
Q Consensus 449 ~KLGG~n~~l~~~~~~~~p~l~~~~tMivG~DV~Hp~~~~~~~pSiaavVaS~d~~~~t~y~~~~~~Q~~~~Eii~~l~~ 528 (568)
+||||+||.|.. + ...+|||||+||+|+..+....+++|+|+.+ | .. +.+..+...++.+.+-
T Consensus 173 aKlGG~pW~l~~------~--~~~~~~iIGidv~~~~~~~~~~~~~a~vf~~-~---g~---g~~~~~~~~~~~~~~~-- 235 (404)
T cd04659 173 AKLGGIPWKLDA------D--SDPADLYIGIGFARSRDGEVRVTGCAQVFDS-D---GL---GLILRGAPIEEPTEDR-- 235 (404)
T ss_pred HhcCCCceEccc------C--CCCCeEEEEEEEEEcCCCCEEEEEEEEEEcC-C---CC---EEEEecCccCCccccc--
Confidence 999999999962 2 2368999999999998652223444443322 3 21 1222233333333310
Q ss_pred CCCCCChHHHHHHHHHHHHHHhCCC-CCCEEEEEecCCC
Q 048669 529 PLPNKDDAGIVRELLVDFYKSSGQT-KPSQIIIFRSTLT 566 (568)
Q Consensus 529 p~~~~~~~~~~~~~L~~f~~~n~~~-lP~~IIiYRDGVS 566 (568)
....+.++++++|..|++.+ +. +|+|||||||||.
T Consensus 236 --~~~~~~~~l~~~l~~y~~~~-~~~~P~rIiihrdg~~ 271 (404)
T cd04659 236 --SPADLKDLLKRVLEGYRESH-RGRDPKRLVLHKDGRF 271 (404)
T ss_pred --CHHHHHHHHHHHHHHHHHHc-CCCCCeEEEEECCCCC
Confidence 00135579999999999987 46 9999999999986
No 9
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.63 E-value=6.4e-16 Score=140.95 Aligned_cols=70 Identities=33% Similarity=0.570 Sum_probs=59.9
Q ss_pred CceEEehHHHHHhhcCCcccCCCCCceEEeCCCCC--CeeEeccceeecCCccccccCCHHHHHHHHHHhcCC
Q 048669 195 KCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRK--PTYIPIELCSLLSLQRYTKALTVFQRSALVEKSQQK 265 (568)
Q Consensus 195 ~g~~iSv~dYf~~~Y~i~L~~~p~lPll~~g~~~~--~~ylP~Elc~i~~gQ~~~~kL~~~q~~~mi~~t~~~ 265 (568)
+|+++||+|||+++||++|+| |+||||+++...+ ++|||||||.|+|+|++.+++.+.+++.|++.+|.+
T Consensus 64 ~g~~itv~eYf~~~Y~i~L~~-p~~Pll~~~~~~~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~~~ 135 (135)
T PF02170_consen 64 DGKEITVAEYFKEKYNIRLKY-PDLPLLNVKSKKKKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFACSP 135 (135)
T ss_dssp TSEEEEHHHHHHHTCT---SS-TTSEEEEECSTTTTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHSS-
T ss_pred CCceEEhHHHHHhhhhccccc-CCCCeEEeccCCCCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHhcC
Confidence 478999999999999999999 9999999998777 999999999999999999999999999999999863
No 10
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=99.49 E-value=1.6e-14 Score=108.71 Aligned_cols=46 Identities=43% Similarity=0.668 Sum_probs=37.9
Q ss_pred eeecccccCCCCCCcccCCCcEEEeeceEEEEEecCCceeEEEeeee
Q 048669 143 FLVRQSFFQNEPRSFFDLGGGVLGCWGFHSSFQATQGGLSLNIGVKD 189 (568)
Q Consensus 143 ~~~gr~fF~~~~~~~~~l~~gle~w~Gf~~Svr~~~~~l~LniDvs~ 189 (568)
+.+||+||+++... .+|++|+|+|+|||+||||+.++|+||||+++
T Consensus 1 ~~vgrsFF~~~~~~-~~l~~Gle~~rG~~qSvRp~~~~l~lNvDvs~ 46 (52)
T PF08699_consen 1 TAVGRSFFPPSGGP-VDLGGGLEAWRGFFQSVRPTQGGLLLNVDVSH 46 (52)
T ss_dssp EEETTEEEE-------EEETTEEEEEEEEEEEEEETTEEEEEEECCE
T ss_pred CccccccCCCCCCC-ccCCCcEEEeEeEEeeeEEcCCCCEEEEeCce
Confidence 35899999987543 78999999999999999999999999999997
No 11
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=99.22 E-value=1.1e-11 Score=109.89 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=42.7
Q ss_pred CceEEehHHHHHhhcCCcccCCCCCceEEeCCC---CCCeeEeccceeec
Q 048669 195 KCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKP---RKPTYIPIELCSLL 241 (568)
Q Consensus 195 ~g~~iSv~dYf~~~Y~i~L~~~p~lPll~~g~~---~~~~ylP~Elc~i~ 241 (568)
+|.++||+|||+++||++|+| |+||||++|++ .+.+|||||||.|+
T Consensus 67 ~~~~isv~dYf~~kY~~~l~~-p~~Pll~~~~~~~~~~~~~lp~Elc~i~ 115 (115)
T cd02825 67 DGKEITFADYFKERYNLTLTD-LNQPLLIVKFSSKKSYSILLPPELCVIT 115 (115)
T ss_pred CCCEEEHHHHHHHHcCCcccC-CCCCEEEecCcccCCCceEEchheEEeC
Confidence 467899999999999999999 99999999987 77899999999985
No 12
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.20 E-value=1.5e-11 Score=108.78 Aligned_cols=44 Identities=39% Similarity=0.970 Sum_probs=41.8
Q ss_pred eEEehHHHHHhhcCCcccCCCCCceEEeCCCCCCeeEeccceeec
Q 048669 197 VDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLL 241 (568)
Q Consensus 197 ~~iSv~dYf~~~Y~i~L~~~p~lPll~~g~~~~~~ylP~Elc~i~ 241 (568)
.+|||+|||+++||++|+| |++|||++|+..+++|+|||||.|.
T Consensus 71 ~~isV~dYf~~~y~~~l~~-p~lP~v~~g~~~~~~~~P~Elc~i~ 114 (114)
T cd02846 71 KEISVADYFKEKYNIRLKY-PNLPCLQVGRKGKPNYLPMELCNIV 114 (114)
T ss_pred cEEEHHHHHHHHcCCcccC-CCCCEEEeCCCCCCcEecceeEEeC
Confidence 4899999999999999999 9999999999888999999999984
No 13
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.19 E-value=1.1e-11 Score=109.88 Aligned_cols=46 Identities=22% Similarity=0.416 Sum_probs=41.6
Q ss_pred ceEEehHHHHHhhcCCcccCCCCCceEEeCCC--------CCCeeEeccceeecC
Q 048669 196 CVDVTVFDYFVNHRRINLCFSGDFPCIDVGKP--------RKPTYIPIELCSLLS 242 (568)
Q Consensus 196 g~~iSv~dYf~~~Y~i~L~~~p~lPll~~g~~--------~~~~ylP~Elc~i~~ 242 (568)
+.++||+|||+++||+.|+| |+||||+++.+ .+++|||||||.++|
T Consensus 62 ~~~~S~~~Yy~~kY~i~I~~-~~qPLL~~~~k~~~~~~~~~~~iyL~pElC~ltg 115 (117)
T cd02845 62 GTEITFVEYYKKQYNIEITD-LNQPLLVSRPKRRDPRGGEKEPIYLIPELCFLTG 115 (117)
T ss_pred CCeeeHHHHHHHHcCCcccc-CCCCcEEeeccccccCCCCCcEEEEchHHhhhcC
Confidence 35899999999999999999 99999999763 348999999999998
No 14
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.50 E-value=7e-08 Score=87.58 Aligned_cols=45 Identities=27% Similarity=0.340 Sum_probs=37.6
Q ss_pred eEEehHHHHHhhcCCcccCCCCCceEEeCC--------------C---------CCCeeEeccceeecC
Q 048669 197 VDVTVFDYFVNHRRINLCFSGDFPCIDVGK--------------P---------RKPTYIPIELCSLLS 242 (568)
Q Consensus 197 ~~iSv~dYf~~~Y~i~L~~~p~lPll~~g~--------------~---------~~~~ylP~Elc~i~~ 242 (568)
..+||+|||+++||+.|+| |+||||++.. + ...++||||||.+.+
T Consensus 66 ~~~Sy~eYy~~kY~i~L~~-~~QPLL~~~~~~~~~NlL~~~~~~~~~~~~~~~~~~~v~L~PELC~~~~ 133 (135)
T cd02844 66 GYATYAEYFKEKYGIVLNH-PNQPLLKGKQIFNLHNLLHNRFEEKGESEEKEKDRYFVELPPELCSVID 133 (135)
T ss_pred ceeeHHHHHHHHhCceecc-CCcceEEEecccccceecccccccccccccccccceEEEeChHHhcccc
Confidence 4699999999999999999 9999998641 0 114799999999864
No 15
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=96.36 E-value=0.0019 Score=57.15 Aligned_cols=60 Identities=8% Similarity=0.012 Sum_probs=42.1
Q ss_pred CcEEEeeceEEEEEecCC-ceeEEEeeee---cCCCCCc-eEEehHHHHHhhcCCcccCCCCCceEEeCC
Q 048669 162 GGVLGCWGFHSSFQATQG-GLSLNIGVKD---RNDDVKC-VDVTVFDYFVNHRRINLCFSGDFPCIDVGK 226 (568)
Q Consensus 162 ~gle~w~Gf~~Svr~~~~-~l~LniDvs~---~~~~~~g-~~iSv~dYf~~~Y~i~L~~~p~lPll~~g~ 226 (568)
.|..|.+.|- -... +.+...||.. +.+.|.+ ..+|++|||+++||+.|++ ++||||.+..
T Consensus 42 ~g~vV~t~Yn----N~d~pK~Y~V~dI~~dltP~S~F~~~~~~Ty~eYyk~KY~I~I~~-~~QPLL~v~~ 106 (122)
T cd02843 42 QDAVVMPWYR----NFDQPQYFYVAEICTDLRPLSKFPGPEYETFEEYYKKKYKLDIQN-LNQPLLDVDH 106 (122)
T ss_pred CCCEEeeccc----CCCCCeEEEEEEEcCCCCCCCCCCCCCCccHHHHHHHhcCeEecc-CCCCcEeecC
Confidence 4566777661 1111 4666667765 3344422 3799999999999999999 9999999854
No 16
>COG1431 Argonaute homolog, implicated in RNA metabolism [Translation, ribosomal structure and biogenesis]
Probab=95.32 E-value=0.13 Score=56.27 Aligned_cols=85 Identities=27% Similarity=0.103 Sum_probs=60.9
Q ss_pred EEEEcCCCCCchhhhhhhhhcccccCceeeEeecc---ccChhHHHHHHHHHHhhcCCcceeccccccCCCCCcCCCCEE
Q 048669 399 LLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT---KVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTI 475 (568)
Q Consensus 399 vlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~---k~~~q~~~NI~lKIN~KLGG~n~~l~~~~~~~~p~l~~~~tM 475 (568)
+...-+- ++...|+.+|+ .+.-|++|.+.-. +.-.-++.|+|.|+-||-+|+++.+-.. .-| -+-
T Consensus 409 ~~k~e~y-kdd~~YailKr---ld~~ipsqvil~~n~rk~~Kg~~tnla~~~~~ktlgqpY~~r~~---~gp-----vDa 476 (685)
T COG1431 409 LKKQEMY-KDDVKYAILKR---LDETIPSQVILDPNNRKPYKGTKTNLASKRYLKTLGQPYLKRNG---LGP-----VDA 476 (685)
T ss_pred hcccccc-ccchHHHHHHh---hcccCcceeeeccccCCcchhhhhHHHHHHHHHhcCCceeeecc---CCC-----ccc
Confidence 3334444 66788999999 4568999999864 3445689999999999999999988521 122 358
Q ss_pred EEEeeeccCCCCCCCCCeEEEEE
Q 048669 476 IFGMDVSHGSPGHSNVPSVAAVV 498 (568)
Q Consensus 476 ivG~DV~Hp~~~~~~~pSiaavV 498 (568)
|+|+||+.-.-+ ...+-|++
T Consensus 477 ivGlDvsr~~~g---n~tV~gct 496 (685)
T COG1431 477 IVGLDVSRVSEG---NWTVEGCT 496 (685)
T ss_pred eeeeeeeEEeeC---CeEEeeee
Confidence 999999987643 34554533
No 17
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=62.46 E-value=20 Score=31.63 Aligned_cols=69 Identities=23% Similarity=0.334 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 381 VDRMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 381 ~~~~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
+...+..+++. ...|.|+++.+.+...+..|...|...+.++||.+..+... ....+-+-..+-++|.-
T Consensus 16 l~~~i~~l~~~-~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 16 LKEEIEKLKEK-GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNED 85 (117)
T ss_dssp HHHHHHHHHHC-T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhc-CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 33444445544 34588988888663446789988888888999999999874 45666778888888854
No 18
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.39 E-value=37 Score=35.07 Aligned_cols=69 Identities=22% Similarity=0.228 Sum_probs=45.4
Q ss_pred HHHHHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeeccc-cChhHHHHHHHHHHhh
Q 048669 382 DRMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEQYLMNVLLKINAK 450 (568)
Q Consensus 382 ~~~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~k-~~~q~~~NI~lKIN~K 450 (568)
...++.++++....|.|+++.+.++..+..|...|...+.++||.+..+.... ....-+.++..++|.-
T Consensus 18 ~~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (293)
T PRK14185 18 AAEVAEIVAKGGKRPHLAAILVGHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRELNQD 87 (293)
T ss_pred HHHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33344444443346888888887645567899988888889999998887642 2333455666677653
No 19
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=53.67 E-value=73 Score=31.23 Aligned_cols=73 Identities=27% Similarity=0.332 Sum_probs=40.3
Q ss_pred CCEEEEEeeeccCCCCCCCCCeEEEEEeeCCCCccceeeEEEEecCCccccccccCCCCCCCChHHHHHHH---HHHHHH
Q 048669 472 VPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVREL---LVDFYK 548 (568)
Q Consensus 472 ~~tMivG~DV~Hp~~~~~~~pSiaavVaS~d~~~~t~y~~~~~~Q~~~~Eii~~l~~p~~~~~~~~~~~~~---L~~f~~ 548 (568)
.+.+|-|+|++|... +.-.+||+|.- ++++..-....++.-.....-|..+- +|+|. ++.|.+
T Consensus 24 ~~~~I~gvDiS~~~~---~~~~vaa~Vv~-~~~~~~~~~~~~~~~~~~~PYIPG~L----------afRE~p~l~~~~~~ 89 (208)
T cd06559 24 EVRLVAGVDVSYKKD---GDLAVAAAVVL-DYPDLEVVETAVAVGEVTFPYIPGLL----------AFREGPPLLEALEK 89 (208)
T ss_pred CccEEEEEEeeeccC---CCeEEEEEEEE-ECCCCcEEEEEEEEEecCCCCcchhH----------HHhhHHHHHHHHHh
Confidence 568999999999752 23456665533 32333333333333332222344443 66665 444433
Q ss_pred HhCCCCCCEEEE
Q 048669 549 SSGQTKPSQIII 560 (568)
Q Consensus 549 ~n~~~lP~~IIi 560 (568)
- ..+|+-|+|
T Consensus 90 -l-~~~PDlilV 99 (208)
T cd06559 90 -L-KTKPDLLLV 99 (208)
T ss_pred -C-CCCCCEEEE
Confidence 2 368998887
No 20
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.83 E-value=58 Score=33.70 Aligned_cols=56 Identities=21% Similarity=0.421 Sum_probs=39.2
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
.|.|+++.+.+...+..|...|...+.++||.+..+... .....-+..++.++|.-
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d 88 (294)
T PRK14187 32 FPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNND 88 (294)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578888887664567789988888888999999888763 22333355555666543
No 21
>KOG3123 consensus Diphthine synthase [Translation, ribosomal structure and biogenesis]
Probab=51.58 E-value=19 Score=34.98 Aligned_cols=46 Identities=22% Similarity=0.314 Sum_probs=32.4
Q ss_pred CeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeeccccChhHHHHHH
Q 048669 396 PCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEQYLMNVL 444 (568)
Q Consensus 396 ~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~k~~~q~~~NI~ 444 (568)
.+++++-=.- +-...|+.||+ ..+.|.+|-|++--|.+.|.+.|++
T Consensus 132 VSiv~ftd~w-rP~SfydkI~~--Nr~~glHTLcLLDIkvkEqs~enl~ 177 (272)
T KOG3123|consen 132 VSIVFFTDNW-RPESFYDKIKE--NRQLGLHTLCLLDIKVKEQSVENLA 177 (272)
T ss_pred EEEEEEccCc-CchhHHHHHHH--hhhcCceeEEEEEEeeccHHHHHHh
Confidence 4444444322 33568999998 6899999999997666666666664
No 22
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.13 E-value=57 Score=33.64 Aligned_cols=69 Identities=14% Similarity=0.308 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHh
Q 048669 381 VDRMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINA 449 (568)
Q Consensus 381 ~~~~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~ 449 (568)
+.+.++.++++....|.|+++.+.+...+..|...|...+.++||.+..+... ....+-+.+...++|.
T Consensus 17 l~~~v~~l~~~~g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 86 (286)
T PRK14184 17 LKTEVAALTARHGRAPGLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNA 86 (286)
T ss_pred HHHHHHHHHhccCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33334444443233578888887664556789988888888999999888754 3344445566677775
No 23
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.02 E-value=64 Score=33.28 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=42.9
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHh
Q 048669 385 FEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINA 449 (568)
Q Consensus 385 ~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~ 449 (568)
++.++.+....|.|+++.+.+...+..|...|...+.++||.+..+... ....+-+.+...++|.
T Consensus 22 v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~ 87 (288)
T PRK14171 22 IQELKSQTNASPKLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNL 87 (288)
T ss_pred HHHHHhccCCCCeEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3344333233578888887664557789888877778999999888764 3344445566666664
No 24
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.61 E-value=75 Score=32.77 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=42.0
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
.|.|+++.+.+...+..|...|...+.++||.+-.+... .....-+.+...++|.-
T Consensus 38 ~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D 94 (287)
T PRK14176 38 TPGLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKR 94 (287)
T ss_pred CCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578888887664567889999888888999999888764 33444566777788753
No 25
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=48.44 E-value=30 Score=32.27 Aligned_cols=73 Identities=22% Similarity=0.197 Sum_probs=39.6
Q ss_pred CCEEEEEeeeccCCCCCCCCCeEEEEEeeCCCCccceeeEEEEecCCccccccccCCCCCCCChHHHHHHHHHHHHHHh-
Q 048669 472 VPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSS- 550 (568)
Q Consensus 472 ~~tMivG~DV~Hp~~~~~~~pSiaavVaS~d~~~~t~y~~~~~~Q~~~~Eii~~l~~p~~~~~~~~~~~~~L~~f~~~n- 550 (568)
.|.-|-++|+||=.. .-.|+++|.=.|....-+.|=.+.+... +-.+|.. +|+|.|..+++..
T Consensus 10 ~P~rIE~fDiSh~~G----~~~Vgs~Vvf~~G~~~k~~YR~f~i~~~--~~~dDy~----------~M~Evl~RR~~~~~ 73 (155)
T PF08459_consen 10 LPRRIECFDISHIQG----SDTVGSMVVFENGKPDKSEYRRFNIKTV--DGGDDYA----------AMREVLTRRFKRLK 73 (155)
T ss_dssp --SEEEEEEEEECTT----TCEEEEEEEEETTEE-GGG-EEEEEE----STT-HHH----------HHHHHHHHHHCCCH
T ss_pred CCCEEEEEECcccCC----cccEEEEEEEECCccChhhCceEecCCC--CCCcHHH----------HHHHHHHHHHhccc
Confidence 567899999999753 3578888876664222233334455532 1225553 8888887776431
Q ss_pred --CCCCCCEEEE
Q 048669 551 --GQTKPSQIII 560 (568)
Q Consensus 551 --~~~lP~~IIi 560 (568)
...+|+-|+|
T Consensus 74 ~~~~~lPDLilI 85 (155)
T PF08459_consen 74 EEKEPLPDLILI 85 (155)
T ss_dssp HHT----SEEEE
T ss_pred ccCCCCCCEEEE
Confidence 1369998886
No 26
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.06 E-value=68 Score=33.25 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=41.8
Q ss_pred HHHHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 383 RMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 383 ~~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
+.++.++.+....|.|+++.+.+...+..|...|...+.++||.+-.+... .....-+.+++.++|.-
T Consensus 20 ~~v~~l~~~~g~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d 88 (296)
T PRK14188 20 AEVARLKAAHGVTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNAD 88 (296)
T ss_pred HHHHHHHHccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 333344333223578888887664556789888887788899998777653 22333344555666554
No 27
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=47.87 E-value=62 Score=34.22 Aligned_cols=56 Identities=27% Similarity=0.303 Sum_probs=36.7
Q ss_pred CCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHh
Q 048669 394 KRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINA 449 (568)
Q Consensus 394 ~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~ 449 (568)
..|.|+++.+.++..+..|...|...+.++||.+..+... .....-+..++.++|.
T Consensus 85 ~~P~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~ 141 (345)
T PLN02897 85 KVPGLAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNE 141 (345)
T ss_pred CCCeEEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3577877777664556788888887777888888877653 2222234455566654
No 28
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.27 E-value=67 Score=33.05 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=52.4
Q ss_pred HHHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh--cCCcceecc
Q 048669 384 MFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK--LGGLNSLLA 459 (568)
Q Consensus 384 ~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K--LGG~n~~l~ 459 (568)
.++.++++....|.|+++.+.+...+..|..+|...+.+.||.+..+... ....+-+..++-++|.. .-|+|-.+.
T Consensus 22 ~i~~~~~~~~~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlP 100 (283)
T PRK14192 22 RVEALKAKTGRTPILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHP 100 (283)
T ss_pred HHHHHHhccCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCC
Confidence 33344433223578888888764567889999998888999999888763 23344467788888865 567766653
No 29
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.87 E-value=63 Score=33.27 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=44.6
Q ss_pred HHHHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 383 RMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 383 ~~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
+.++.++++....|.|+++.+.+...+..|...|...+.++||.+..+... ....+-+...+.++|.-
T Consensus 21 ~~v~~l~~~~~~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d 89 (285)
T PRK10792 21 QKVQARVAAGLRAPGLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNAD 89 (285)
T ss_pred HHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 333444433223478888877663456789988888888999998888764 33444455666777754
No 30
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.60 E-value=64 Score=33.42 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 381 VDRMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 381 ~~~~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
+.+.++.++++....|.|+++.+-+...+..|...|...+.++||.+-.+... .....-+.....++|.-
T Consensus 19 lk~~v~~l~~~~g~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D 89 (297)
T PRK14168 19 IRGEVAELKEKYGKVPGLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNND 89 (297)
T ss_pred HHHHHHHHHHcCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33334444443233578888887663456789988888888999998777653 33333345566666643
No 31
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=46.44 E-value=78 Score=32.85 Aligned_cols=57 Identities=30% Similarity=0.413 Sum_probs=38.7
Q ss_pred CCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 394 KRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 394 ~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
..|.|+++.+-+...+..|...|...+.++||.+-.+... ....+-+.....++|.-
T Consensus 38 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D 95 (299)
T PLN02516 38 KVPGLAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNAN 95 (299)
T ss_pred CCCeEEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3578888777663556789988888888999998888663 33333344555556543
No 32
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.38 E-value=69 Score=32.91 Aligned_cols=56 Identities=18% Similarity=0.309 Sum_probs=41.1
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
.|.|+++.+.+...+..|...|...+.++||.+..+... ....+-+.+...++|.-
T Consensus 31 ~P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D 87 (281)
T PRK14183 31 VPGLAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNNN 87 (281)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578888888764557889999988888999999888753 33333455666777743
No 33
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.01 E-value=73 Score=33.02 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=38.8
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
.|.|+++.+.+...+..|...|...+.++||.+-.+... ....+-+.+++.++|.-
T Consensus 32 ~p~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (297)
T PRK14186 32 PPGLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQD 88 (297)
T ss_pred CceEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 577887777663456789888888888899998888763 33343455666677653
No 34
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.52 E-value=72 Score=32.82 Aligned_cols=68 Identities=18% Similarity=0.275 Sum_probs=43.8
Q ss_pred HHHHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeeccc-cChhHHHHHHHHHHhh
Q 048669 383 RMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEQYLMNVLLKINAK 450 (568)
Q Consensus 383 ~~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~k-~~~q~~~NI~lKIN~K 450 (568)
+.++.++++....|.|+++.+.+...+..|...|...+.++||.+..+.... ....-+.++..++|.-
T Consensus 19 ~~v~~~~~~~g~~P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (282)
T PRK14180 19 TQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNND 87 (282)
T ss_pred HHHHHHHhccCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3334444332235788888776534567899888888889999998887643 3333455666777643
No 35
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=45.28 E-value=76 Score=33.77 Aligned_cols=65 Identities=26% Similarity=0.317 Sum_probs=42.3
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHh
Q 048669 385 FEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINA 449 (568)
Q Consensus 385 ~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~ 449 (568)
++.++++....|.|+++.+.+...+..|...|...+.++||.+..+... ....+-+.+.+.++|.
T Consensus 93 v~~lk~~~g~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~ 158 (364)
T PLN02616 93 VSRMKESIGVVPGLAVILVGDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFISGFNN 158 (364)
T ss_pred HHHHHHcCCCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3344443233578888888764557789988888888999998877653 2233344556666664
No 36
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.73 E-value=77 Score=32.81 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=41.0
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
.|.|+++.+.+...+..|...|...+.++||.+-.+... .....-+.+...++|.-
T Consensus 31 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (295)
T PRK14174 31 VPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNND 87 (295)
T ss_pred CCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578888888764557789999888888999999888764 33344455666777754
No 37
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.61 E-value=85 Score=32.31 Aligned_cols=56 Identities=16% Similarity=0.310 Sum_probs=39.4
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
.|.|+++.+.+...+..|...|...+.+.||.+-.+... .....-+.++..++|.-
T Consensus 32 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (284)
T PRK14179 32 VPGLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQD 88 (284)
T ss_pred CceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578888877663456789888877777899998877664 33444455677777653
No 38
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.39 E-value=88 Score=32.21 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=41.9
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHh--hcCCc
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINA--KLGGL 454 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~--KLGG~ 454 (568)
.|.|+++.+.+...+..|...|...+.++||.+..+... ....+-+.+...++|. ..-|+
T Consensus 33 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GI 95 (284)
T PRK14177 33 IPKLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGI 95 (284)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeE
Confidence 478887777653456789888887788999999888764 3344455667777776 34455
No 39
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.90 E-value=86 Score=32.56 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=35.6
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHh
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINA 449 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~ 449 (568)
.|.|+++.+.+...+..|...|...+.++||.+-.+... .....-+.+...++|.
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 88 (301)
T PRK14194 33 EPALAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNA 88 (301)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 578887777664456789888887788889988777653 2223333444444443
No 40
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.89 E-value=90 Score=32.12 Aligned_cols=55 Identities=15% Similarity=0.288 Sum_probs=37.8
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeeccc-cChhHHHHHHHHHHh
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEQYLMNVLLKINA 449 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~k-~~~q~~~NI~lKIN~ 449 (568)
.|.|+++.+.+...+..|...|...+.++||.+..+.... ...+-+.+.+.++|.
T Consensus 30 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 85 (282)
T PRK14169 30 TPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNH 85 (282)
T ss_pred CCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5778777776644567898888888888999888877642 233334566666665
No 41
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.10 E-value=86 Score=32.27 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=39.8
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeeccc-cChhHHHHHHHHHHh
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPTK-VNEQYLMNVLLKINA 449 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~k-~~~q~~~NI~lKIN~ 449 (568)
.|.|+++.+.+...+..|...|...+.++||.+..+.... ...+-+.+...++|.
T Consensus 30 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 30 ESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNH 85 (282)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788888776634567899888888889999999887643 333345566677775
No 42
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.64 E-value=98 Score=31.89 Aligned_cols=57 Identities=21% Similarity=0.290 Sum_probs=37.8
Q ss_pred CCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 394 KRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 394 ~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
..|.|+++.+-+...+..|...|...+.++||.+-.+... .....-+.+...++|.-
T Consensus 30 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (285)
T PRK14191 30 KRPKLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTD 87 (285)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3577887777653456788888887788889888777653 22333445666666643
No 43
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.72 E-value=98 Score=31.89 Aligned_cols=56 Identities=23% Similarity=0.231 Sum_probs=40.6
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
.|.|+++.+.+...+..|...|...+.++||.+..+... ....+-+.+...++|.-
T Consensus 32 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D 88 (284)
T PRK14193 32 TPGLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNAD 88 (284)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578888887663456789998888888999999888764 33344455666777755
No 44
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.29 E-value=98 Score=31.87 Aligned_cols=56 Identities=23% Similarity=0.374 Sum_probs=38.3
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
.|.|+++.+.+...+..|...|...+.++||.+..+... .....-+.....++|.-
T Consensus 32 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (284)
T PRK14190 32 VPGLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNAD 88 (284)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 578887777663456789888887778899988887653 33333355666677654
No 45
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=38.69 E-value=35 Score=23.00 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=14.5
Q ss_pred HHHHHHHHHhCCCCCCEEE
Q 048669 541 ELLVDFYKSSGQTKPSQII 559 (568)
Q Consensus 541 ~~L~~f~~~n~~~lP~~II 559 (568)
.+..+|++.| |++|..|-
T Consensus 15 ~rv~~f~~~n-gRlPnyV~ 32 (33)
T PF09373_consen 15 SRVNNFYESN-GRLPNYVS 32 (33)
T ss_pred HHHHHHHHHc-CCCCCeee
Confidence 4678898887 79999874
No 46
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.49 E-value=1.2e+02 Score=31.39 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=36.8
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
.|.|+++.+.+...+..|...|...+.++||.+..+... .....-+.++..++|.-
T Consensus 29 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 85 (287)
T PRK14173 29 VPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNAD 85 (287)
T ss_pred CCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 567777777653446678888877777888888877653 23333355666666653
No 47
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.05 E-value=1.2e+02 Score=31.06 Aligned_cols=56 Identities=20% Similarity=0.215 Sum_probs=39.7
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
.|.|+++.+.+...+..|...|...+.++||.+..+... .....-+.+...++|.-
T Consensus 32 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d 88 (278)
T PRK14172 32 IPKIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKD 88 (278)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 478888887763456779988887788999999888764 33333455667777754
No 48
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.34 E-value=1.3e+02 Score=30.95 Aligned_cols=56 Identities=14% Similarity=0.330 Sum_probs=38.1
Q ss_pred CCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHh
Q 048669 394 KRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINA 449 (568)
Q Consensus 394 ~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~ 449 (568)
..|.|+++.+.+...+..|...|...+.++||.+..+... .....-+.++..++|.
T Consensus 25 ~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 81 (287)
T PRK14181 25 TAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNN 81 (287)
T ss_pred CCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578877777663456789888888888899988887663 2333334566666663
No 49
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.02 E-value=1.3e+02 Score=31.04 Aligned_cols=55 Identities=25% Similarity=0.369 Sum_probs=37.7
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHh
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINA 449 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~ 449 (568)
.|.|+++.+-+...+..|...|...+.++||.+-.+... .....-+-+...++|.
T Consensus 31 ~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (284)
T PRK14170 31 KPGLAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNE 86 (284)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 577888877663456789888888788899998887764 2233334456666664
No 50
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.82 E-value=1.6e+02 Score=30.27 Aligned_cols=57 Identities=14% Similarity=0.241 Sum_probs=37.9
Q ss_pred CCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 394 KRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 394 ~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
..|.|+++.+.+...+..|...|...+.++||.+..+... .....-+.....++|.-
T Consensus 25 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 82 (279)
T PRK14178 25 LYPRLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNED 82 (279)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3578887777663456788888887788899988887653 22333344555666543
No 51
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.80 E-value=1.4e+02 Score=30.91 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=36.0
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
.|.|+++.+.+...+..|...|...+.++||.+-.+... ....+-+.+...++|.-
T Consensus 31 ~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (297)
T PRK14167 31 TPGLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNAD 87 (297)
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 567777777653456778888777777888888777653 23333345555666544
No 52
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.51 E-value=1.6e+02 Score=30.34 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=38.2
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHh
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINA 449 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~ 449 (568)
.|.|+++.+.+...+..|...|...+.++||.+-.+... ....+-+.++..++|.
T Consensus 32 ~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 32 QPGLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNR 87 (285)
T ss_pred CCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 578888777664556789888888888899988877653 3334445566666664
No 53
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.59 E-value=1.5e+02 Score=30.54 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=38.1
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHh
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINA 449 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~ 449 (568)
.|.|+++.+.+...+..|...|...+.++||.+-.+... ....+-+.+..-++|.
T Consensus 30 ~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14182 30 QTGLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNA 85 (282)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 577888877653456789888887788899988887753 3344445566666665
No 54
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.26 E-value=1.6e+02 Score=30.41 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=38.2
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHh
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINA 449 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~ 449 (568)
.|.|+++.+.+...+..|...|...+.++||.+-.+... .....-+.+...++|.
T Consensus 32 ~p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (286)
T PRK14175 32 TPKLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNN 87 (286)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 578888777663456789888888888899998888764 2333344566666764
No 55
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=30.26 E-value=1.5e+02 Score=30.53 Aligned_cols=67 Identities=25% Similarity=0.349 Sum_probs=44.6
Q ss_pred HHHHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHh
Q 048669 383 RMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINA 449 (568)
Q Consensus 383 ~~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~ 449 (568)
+..+.+++.....|.|+++.+-+...+..|-+.|...+.+.|+.+...... .....-+.++..++|.
T Consensus 18 ~~v~~~~~~~~~~P~LavilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~ 85 (283)
T COG0190 18 EKVEALKAKGGFKPGLAVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNA 85 (283)
T ss_pred HHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcC
Confidence 333344442223678888888663346899999999888999999998764 3344445556666643
No 56
>PRK12306 uvrC excinuclease ABC subunit C; Reviewed
Probab=23.38 E-value=2.3e+02 Score=31.85 Aligned_cols=73 Identities=25% Similarity=0.283 Sum_probs=43.8
Q ss_pred CCEEEEEeeeccCCCCCCCCCeEEEEEeeCCCCccceeeEEEEecCCccccccccCCCCCCCChHHHHHHHHHHHHHHhC
Q 048669 472 VPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSG 551 (568)
Q Consensus 472 ~~tMivG~DV~Hp~~~~~~~pSiaavVaS~d~~~~t~y~~~~~~Q~~~~Eii~~l~~p~~~~~~~~~~~~~L~~f~~~n~ 551 (568)
.|.-|-++|+||=.. .-.||++|.=.|+.-.-+.|=.+.+... +-.+|. .+|+|.|...+....
T Consensus 365 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~p~k~~YR~f~Ik~~--~~~dDy----------~~m~Evl~RR~~r~~ 428 (519)
T PRK12306 365 PPNVIECFDISHLSG----TSTVGSMVQFRNGKPDKKNYRRFKIKTV--EGIDDF----------ASIAEVVRRRYSRLL 428 (519)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEeCCccChhhcCeeecCCC--CCCCHH----------HHHHHHHHHHHhhcc
Confidence 456789999999653 3578888877664222233333445431 113454 377787776664321
Q ss_pred ---CCCCCEEEE
Q 048669 552 ---QTKPSQIII 560 (568)
Q Consensus 552 ---~~lP~~IIi 560 (568)
+.+|+-|||
T Consensus 429 ~~~~~~PDLilI 440 (519)
T PRK12306 429 EENSELPDLIVI 440 (519)
T ss_pred cccCCCCCEEEE
Confidence 148998886
No 57
>PRK14670 uvrC excinuclease ABC subunit C; Provisional
Probab=22.88 E-value=2.4e+02 Score=32.14 Aligned_cols=75 Identities=21% Similarity=0.229 Sum_probs=44.9
Q ss_pred CCEEEEEeeeccCCCCCCCCCeEEEEEeeCCCCccceeeEEEEecCCccccccccCCCCCCCChHHHHHHHHHHHHHHhC
Q 048669 472 VPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSG 551 (568)
Q Consensus 472 ~~tMivG~DV~Hp~~~~~~~pSiaavVaS~d~~~~t~y~~~~~~Q~~~~Eii~~l~~p~~~~~~~~~~~~~L~~f~~~n~ 551 (568)
.|.-|-++|+||=.. .-.||++|.=.|+...-+.|=.+.+........+|.. +|+|.|...+..-.
T Consensus 357 ~p~rIE~fDiSh~~G----~~~V~smVvf~~G~~~k~~YRkf~ik~~~~~~~DD~a----------~M~Evl~RR~~r~~ 422 (574)
T PRK14670 357 LPKTIEGFDIAHLNG----QKTVASLVTFKMGKPFKDGYRVYKINSLLKGEIDDFK----------AIKEVISRRYSKLI 422 (574)
T ss_pred CCCeEEEEECCccCC----CCceEEEEEEECCccChhhCCeeeccCCCCCCCCHHH----------HHHHHHHHHHhhcc
Confidence 467899999999764 3478888877664222233333444431111135553 88888777765411
Q ss_pred ---CCCCCEEEE
Q 048669 552 ---QTKPSQIII 560 (568)
Q Consensus 552 ---~~lP~~IIi 560 (568)
+.+|+-|||
T Consensus 423 ~~~~~~PDLilI 434 (574)
T PRK14670 423 NEQLELPNLILI 434 (574)
T ss_pred cccCCCCCEEEE
Confidence 258998886
No 58
>PRK14672 uvrC excinuclease ABC subunit C; Provisional
Probab=22.14 E-value=2.5e+02 Score=32.66 Aligned_cols=74 Identities=24% Similarity=0.327 Sum_probs=46.2
Q ss_pred CCEEEEEeeeccCCCCCCCCCeEEEEEeeCCCCccceeeEEEEecCCccccccccCCCCCCCChHHHHHHHHHHHHHHhC
Q 048669 472 VPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSG 551 (568)
Q Consensus 472 ~~tMivG~DV~Hp~~~~~~~pSiaavVaS~d~~~~t~y~~~~~~Q~~~~Eii~~l~~p~~~~~~~~~~~~~L~~f~~~n~ 551 (568)
.|..|-++|+||=.. .-.||++|.=.|+.--.+.|=.+.+.... .-++|.. +|+|.|...+.+..
T Consensus 453 ~p~rIE~fDiSh~~G----~~~VasmVvf~~G~p~k~~YR~f~ik~~~-~~~DD~a----------sM~Evl~RR~~r~~ 517 (691)
T PRK14672 453 IPTLIEGFDISHLGG----KYTVASLICFKNGAPDTKNYRLFNLRAHD-TRIDDFA----------SMREAIARRYTHTP 517 (691)
T ss_pred CCCeEEEEECCccCC----cCceEEEEEEECCccChhhCCeeeccCCC-CCCchHH----------HHHHHHHHHhhccc
Confidence 578999999999764 35788888776642222333334444311 1135553 88888887765421
Q ss_pred --CCCCCEEEE
Q 048669 552 --QTKPSQIII 560 (568)
Q Consensus 552 --~~lP~~IIi 560 (568)
..+|+-|||
T Consensus 518 ~~~~~PDLilI 528 (691)
T PRK14672 518 EGYTLPDLILV 528 (691)
T ss_pred ccCCCCCEEEE
Confidence 258998886
Done!