Query 048669
Match_columns 568
No_of_seqs 224 out of 1010
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 20:45:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048669.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048669hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f3t_A Protein argonaute-2; hy 100.0 5E-100 2E-104 876.8 50.5 476 17-567 93-675 (861)
2 4f1n_A Kpago; argonaute, RNAI, 100.0 1.2E-86 4.1E-91 766.2 37.0 506 16-567 119-845 (1046)
3 1yvu_A Hypothetical protein AQ 100.0 1.1E-62 3.6E-67 552.9 16.9 396 80-567 77-575 (706)
4 1u04_A Argonaute, hypothetical 100.0 3.7E-56 1.3E-60 499.9 24.4 443 4-565 26-631 (771)
5 3ho1_A Argonaute; argonaute, p 100.0 1.8E-49 6.1E-54 438.9 23.7 338 161-566 142-549 (685)
6 2yha_A Post-transcriptional ge 100.0 6.3E-47 2.1E-51 400.3 20.0 224 321-567 7-248 (388)
7 2yhb_A QDE-2, post-transcripti 100.0 1.2E-45 4.1E-50 395.5 19.9 224 321-567 7-248 (437)
8 4g0o_A Protein argonaute 5; MI 99.9 4.6E-27 1.6E-31 213.9 11.6 129 321-458 5-139 (139)
9 4g0x_A Protein argonaute 1; MI 99.9 1.9E-26 6.6E-31 211.9 12.2 135 321-458 5-147 (147)
10 4g0m_A Protein argonaute 2; MI 99.9 4E-26 1.4E-30 210.5 10.0 136 321-458 5-150 (150)
11 3luc_A Protein argonaute-2; MI 99.9 1.1E-25 3.9E-30 204.5 12.5 126 321-455 5-138 (138)
12 2w42_A PIWI, putative uncharac 99.9 1.4E-24 4.7E-29 232.3 4.0 190 328-561 47-254 (427)
13 1vyn_A Argonaute2; nucleic aci 99.7 2.2E-18 7.5E-23 157.2 5.7 69 195-265 75-143 (143)
14 2xfm_A MIWI, PIWI-like protein 99.6 8E-17 2.8E-21 148.0 4.6 73 195-275 62-149 (150)
15 3qir_A PIWI-like protein 2; st 99.6 2.4E-16 8E-21 143.9 5.8 72 195-274 61-148 (148)
16 3mj0_A Protein argonaute-2; ar 99.4 6.2E-14 2.1E-18 124.3 5.1 52 195-248 73-124 (124)
17 3o7v_X PIWI-like protein 1; PI 99.4 1.6E-13 5.4E-18 121.4 6.1 55 195-257 61-124 (124)
18 1r6z_P Chimera of maltose-bind 99.3 1.2E-12 4.2E-17 143.2 5.8 55 195-251 455-509 (509)
19 2qvw_A GLP_546_48378_50642; di 97.6 4.2E-05 1.4E-09 86.7 5.4 62 180-242 169-253 (756)
20 4b4u_A Bifunctional protein fo 53.4 24 0.00081 35.2 6.8 67 384-450 42-109 (303)
21 4a26_A Putative C-1-tetrahydro 39.9 54 0.0019 32.6 6.9 77 382-458 23-103 (300)
22 1a4i_A Methylenetetrahydrofola 39.0 56 0.0019 32.5 6.9 70 381-450 20-91 (301)
23 4a5o_A Bifunctional protein fo 36.8 63 0.0022 31.9 6.8 74 385-458 25-101 (286)
24 3l07_A Bifunctional protein fo 36.0 61 0.0021 32.0 6.5 77 382-458 21-100 (285)
25 2c2x_A Methylenetetrahydrofola 33.8 73 0.0025 31.3 6.7 68 382-450 20-88 (281)
26 1b0a_A Protein (fold bifunctio 32.7 59 0.002 32.1 5.8 70 381-450 19-89 (288)
27 3p2o_A Bifunctional protein fo 30.6 77 0.0026 31.2 6.3 64 395-458 33-99 (285)
28 2nrr_A Uvrabc system protein C 29.7 1E+02 0.0036 27.5 6.4 68 473-560 17-85 (159)
29 1edz_A 5,10-methylenetetrahydr 29.7 88 0.003 31.3 6.6 68 381-450 21-89 (320)
30 3nqi_A Putative lipoprotein; s 21.8 53 0.0018 31.5 3.1 23 539-561 196-218 (246)
No 1
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=100.00 E-value=4.5e-100 Score=876.84 Aligned_cols=476 Identities=32% Similarity=0.530 Sum_probs=405.7
Q ss_pred CccccCccceeecCCCCCCceEEEEEeCCCCCCccCCCCCCCCCCCCCchhhhhhccCCCceEEEEEEEeeccChHHHHH
Q 048669 17 KLGPTGEKSLFTISALPHKKMEFLVLLDNPSSYRTTSNDSPDGHGSNNERDRKRRRVSQSKTFKVEISVAAKIPLQAIAA 96 (568)
Q Consensus 17 ~~~~DG~~~l~t~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~i~~~~l~~ 96 (568)
.+||||+++|||+++||+++.++++.+... ++ .++++|+|+|+++++|++++|.+
T Consensus 93 ~~afDG~~~l~s~~~L~~~~~~~~~~v~~~------------~~-------------~~~~~~~V~I~~~~~i~l~~L~~ 147 (861)
T 4f3t_A 93 KPVFDGRKNLYTAMPLPIGRDKVELEVTLP------------GE-------------GKDRIFKVSIKWVSCVSLQALHD 147 (861)
T ss_dssp CCEECSSSEEEESSCCSCSSCEEEEECCC--------------------------------CEEEEEEEEEEEEHHHHHH
T ss_pred eEEEcCcceEEECCcCCCCCcceEEEEecC------------CC-------------CCCcEEEEEEEEeeecCHHHHHH
Confidence 369999999999999998654444443211 00 13678999999999999999999
Q ss_pred HhcCCCCcChHHHHHHHHHHHhhhhhhcccccchhhhhhcccccceeeecccccCCCCCCcccCCCcEEEeeceEEEEEe
Q 048669 97 ALHGQESQNSREAFRVLDIILRQHAAKHMIDHRSISIFLATSYRGCFLVRQSFFQNEPRSFFDLGGGVLGCWGFHSSFQA 176 (568)
Q Consensus 97 ~l~g~~~~~~~~~iq~Lniilr~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~fF~~~~~~~~~l~~gle~w~Gf~~Svr~ 176 (568)
||+|.....+.++||+||||||+.++ +++..+||+||+++.+...++++|+|+|+|||+|||+
T Consensus 148 ~l~g~~~~~~~~~iq~Lniilr~~~~-----------------~~~~~vGR~Ff~~~~~~~~~lg~Gle~w~G~~~Svr~ 210 (861)
T 4f3t_A 148 ALSGRLPSVPFETIQALDVVMRHLPS-----------------MRYTPVGRSFFTASEGCSNPLGGGREVWFGFHQSVRP 210 (861)
T ss_dssp HHHTCSSSCCHHHHHHHHHHHHHHHH-----------------HHSEEETTEEECCC---CCEEETTEEEEEEEEEEEEE
T ss_pred HhcCCCCCCcHHHHHHHHHHHHhhcc-----------------ccccccCCCccCCCCCceeccCCCEEEEeceeEEEEe
Confidence 99999888889999999999999766 4789999999998755446789999999999999999
Q ss_pred cCCceeEEEeeee-------------------------------------------------------------------
Q 048669 177 TQGGLSLNIGVKD------------------------------------------------------------------- 189 (568)
Q Consensus 177 ~~~~l~LniDvs~------------------------------------------------------------------- 189 (568)
++++|+||+|+||
T Consensus 211 ~~~~l~LnvDvs~~~F~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~k~LkGl~V~~t~~~~~~r~yrI~~i~~~p 290 (861)
T 4f3t_A 211 SLWKMMLNIDVSATAFYKAQPVIEFVCEVLDFKSIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRP 290 (861)
T ss_dssp CSSSEEEEEEEEEEEEECCEEHHHHHHHHHTCSSCC---CCCCHHHHHHHHHHHTTCEEEESCC---CCEEEEEEEEEEE
T ss_pred cCCccEEeecccceeEeeCCcHHHHHHHHhcccchhhhccccCHHHHHHHHHHhCCcEEEEeecCCCCceEEEeeCCCCC
Confidence 9999999999999
Q ss_pred cC-CCC-----Cc--eEEehHHHHHhhcCCcccCCCCCceEEeCCCCCCeeEeccceeecCCccccccCCHHHHHHHHHH
Q 048669 190 RN-DDV-----KC--VDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTKALTVFQRSALVEK 261 (568)
Q Consensus 190 ~~-~~~-----~g--~~iSv~dYf~~~Y~i~L~~~p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~kL~~~q~~~mi~~ 261 (568)
.+ .+| +| .+|||+|||+++||++|+| |+||||++|++++++|||||||.|++||+++++|+++|+++||++
T Consensus 291 a~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~-p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q~s~mik~ 369 (861)
T 4f3t_A 291 ASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRY-PHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRA 369 (861)
T ss_dssp TTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSC-TTSEEEEESCTTTTEEEEGGGEEECTTCBCCSCCCHHHHHHHHHH
T ss_pred CCCcEEEeecCCCCceeEEHHHHHHHhcCcccCC-CCCceEEecCCCCCccccceeEEeeCCccccccCCHHHHHHHHHH
Confidence 00 012 23 4799999999999999999 999999999988899999999999999999999999999999999
Q ss_pred hcCChHHHHHHhhccchhHHHHHHHhcCCCCcccccccCeeecCcceEeeeEecCCCee---------------------
Q 048669 262 SQQKPQEKMKIITDDSMEHYAQVMRSNKNDSEPMLRSCGISINSRFAQVEGRILSAPRI--------------------- 320 (568)
Q Consensus 262 t~~~P~~R~~~I~~~~~~~f~~~l~~~~~~~~~~l~~fGl~i~~~~~~V~gRvL~~P~I--------------------- 320 (568)
|+.+|.+|.+.|.+ .++.++++.+++|++|||+|+++|++|+||+||||+|
T Consensus 370 ~~~~P~~R~~~I~~--------~~~~l~~~~~~~l~~fGi~i~~~~~~v~gRvL~~P~I~y~~~~~~~~~~~~g~W~~~~ 441 (861)
T 4f3t_A 370 TARSAPDRQEEISK--------LMRSASFNTDPYVREFGIMVKDEMTDVTGRVLQPPSILYGGRNKAIATPVQGVWDMRN 441 (861)
T ss_dssp HCCCHHHHHHHHHH--------HHHHHCGGGCHHHHHTTCEECSSCEEEEEEECCCCCEECCSSSCCEECCBTTBCCCTT
T ss_pred HccCHHHHHHHHHH--------HHHHhcCCCchHHHHCCCEEeCCeeEEEEEEecCceEEecCCcccccCCCCCceeccC
Confidence 99999999999998 5666666677899999999999999999999999999
Q ss_pred --eccCcccCceEEEEeCCc-----ccHHHHHHHHHHHhhhcCCCCCC-CCcccccCccccCCCChHHHHHHHHHHHHhc
Q 048669 321 --FVPAAKIDHWAVANFSGG-----CDIRSLCRDLIRFGEMKRISTSP-PLNVFEENPQFRRAPAPVRVDRMFEQMKQKF 392 (568)
Q Consensus 321 --f~~~~~l~~W~vv~~~~~-----~~~~~f~~~l~~~~~~~Gm~~~~-p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (568)
|+.++++++|+++++... ..+++|++.|.+.|+.+||.+.. |..+... ...++++.+++.+++..
T Consensus 442 ~~f~~~~~l~~W~vv~~~~~~~~~~~~~~~f~~~L~~~~~~~G~~i~~~p~~~~~~-------~~~~~~~~~~~~l~~~~ 514 (861)
T 4f3t_A 442 KQFHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKYA-------QGADSVEPMFRHLKNTY 514 (861)
T ss_dssp CCCTBCCCBCCEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSCCSEEEEC-------CSSSSHHHHHHHHHHHS
T ss_pred CEEccCcccceeEEEEecCcccccHHHHHHHHHHHHHHHhhCCcccCCCCeEEEec-------CchHHHHHHHHHHHhhc
Confidence 445667899999998642 25899999999999999999975 4332221 12356788899888764
Q ss_pred cCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc---ccChhHHHHHHHHHHhhcCCcceeccccccCCCCCc
Q 048669 393 EKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT---KVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLV 469 (568)
Q Consensus 393 ~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~---k~~~q~~~NI~lKIN~KLGG~n~~l~~~~~~~~p~l 469 (568)
.++||||||+|+ + ++.|+.||++||+++||+||||+.+ |.++||++|||||||+||||+||.+.+. ..|.+
T Consensus 515 -~~~qlvl~Ilp~-~-~~~Y~~IK~~~~~~~gI~TQcv~~~~~~k~~~q~~~ni~lKiN~KlGG~n~~l~~~---~~~~~ 588 (861)
T 4f3t_A 515 -AGLQLVVVILPG-K-TPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVNNILLPQ---GRPPV 588 (861)
T ss_dssp -TTCCEEEEEESS-S-CTHHHHHHHHHHHTSCCEEEEEETHHHHSCCHHHHHHHHHHHHHHTTCBCCEECST---TSCGG
T ss_pred -CCCcEEEEEeCC-C-ccHHHHHHHHhcccCCcceEEEEecccccccHHHHHHHHHHHHHhcCCcceecccc---ccccc
Confidence 468999999997 4 6899999999999999999999985 5689999999999999999999998642 24555
Q ss_pred CCCCEEEEEeeeccCCCCCCCCCeEEEEEeeCCCCccceeeEEEEecCCccccccccCCCCCCCChHHHHHHHHHHHHHH
Q 048669 470 SKVPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKS 549 (568)
Q Consensus 470 ~~~~tMivG~DV~Hp~~~~~~~pSiaavVaS~d~~~~t~y~~~~~~Q~~~~Eii~~l~~p~~~~~~~~~~~~~L~~f~~~ 549 (568)
...+|||||+||+||++++...|||||||||+| .++++|++.+++|.+++|+|++|. +|++++|++|++.
T Consensus 589 ~~~~tmiiG~DV~H~~~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~E~i~~l~---------~~~~~~L~~~~~~ 658 (861)
T 4f3t_A 589 FQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMD-AHPNRYCATVRVQQHRQEIIQDLA---------AMVRELLIQFYKS 658 (861)
T ss_dssp GGSCEEEEEEEEECCC----CCCEEEEEEEECS-SSSCCEEEEEEEESTTCCSCTTHH---------HHHHHHHHHHHHH
T ss_pred cCCceEEEEEEecccCCCCCCCceEEEEEEEcC-CCcceEEEEEEEcCCCccHHHHHH---------HHHHHHHHHHHHH
Confidence 568999999999999998656899999999999 499999999999999999999876 5999999999998
Q ss_pred hCCCCCCEEEEEecCCCC
Q 048669 550 SGQTKPSQIIIFRSTLTW 567 (568)
Q Consensus 550 n~~~lP~~IIiYRDGVS~ 567 (568)
| +.+|++|||||||||+
T Consensus 659 ~-~~~P~~IiiyRDGVse 675 (861)
T 4f3t_A 659 T-RFKPTRIIFYRDGVSE 675 (861)
T ss_dssp H-SCCCSEEEEEEESCCG
T ss_pred h-CCCCceEEEEecCCCh
Confidence 7 6999999999999996
No 2
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=1.2e-86 Score=766.25 Aligned_cols=506 Identities=19% Similarity=0.248 Sum_probs=368.0
Q ss_pred CCccccCccceeecCCCC---CCceEEEEEeCCCCCCccCCCCCCCCCCCCCchhhhh-hccCCCceEEEEEEEeeccCh
Q 048669 16 SKLGPTGEKSLFTISALP---HKKMEFLVLLDNPSSYRTTSNDSPDGHGSNNERDRKR-RRVSQSKTFKVEISVAAKIPL 91 (568)
Q Consensus 16 ~~~~~DG~~~l~t~~~l~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~i~~~~~i~~ 91 (568)
..+||||+++|||+.+|| +....+.|.+...+.. .++++| .++..+...+ ....+.++|+|+|+++++|++
T Consensus 119 ~~ia~d~~~~L~s~~~L~~~~l~~~~~~v~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~V~i~~~~~i~l 193 (1046)
T 4f1n_A 119 DRIAFNGEDTIYSHVPLEEFTLFDGCWEVSNKQKKKV--VPGMGA---PSNKASLQKKIDPELEEMVSQITLKFSGKVGL 193 (1046)
T ss_dssp TSEEECSSSEEEESSCGGGSTTCTTCCC------------------------------------CGGGGEEEEEEEEEEG
T ss_pred CceeecCccceEECCcCCccccCCCceEEeccccccc--cCCccc---ccccccccccccccccCceEEEEEEEeeecCH
Confidence 568999999999999999 4333566665510000 001110 0000000000 002457889999999999999
Q ss_pred HHHHHHhcCCCCcC--h---HHHHHHHHHHHhhhhhhcccccchhhhhhcccccceeeec-ccccCCCC-CCcccCCCcE
Q 048669 92 QAIAAALHGQESQN--S---REAFRVLDIILRQHAAKHMIDHRSISIFLATSYRGCFLVR-QSFFQNEP-RSFFDLGGGV 164 (568)
Q Consensus 92 ~~l~~~l~g~~~~~--~---~~~iq~Lniilr~~~~~~~~~~~~~~~~~~~~~~~~~~~g-r~fF~~~~-~~~~~l~~gl 164 (568)
.+|.+||.|+.... . .+++++||+||++.+..+. ....++| ++||..+. ....+||+|+
T Consensus 194 ~dL~~~l~~~~~~~~~~~~~~~~i~aL~~il~~~~~~~~--------------~~i~~vg~nkFF~~~~~~~~~~Lg~Gl 259 (1046)
T 4f1n_A 194 KDIYNDTTTQDTEVQESRMSAIDKTCLLSLLGAKFMSTD--------------DLIFQVQGNKFFIFNNFAKAIPFQIGG 259 (1046)
T ss_dssp GGGGSCSSCCCTTHHHHHHTCHHHHHHHHHHHHHHHCSS--------------SCEEEETTTEEEECSTTCCEEECSSSE
T ss_pred HHHHHHHcCCCccccccccchHHHHHHHHHHhhhhhhcC--------------CceEEcCCcccccCCCCCccccCCCcE
Confidence 99999999986532 2 6899999999999998510 1224554 57885443 3457899999
Q ss_pred EEeeceEEEEEecCCceeEEEeeee----------------------------------c--------------------
Q 048669 165 LGCWGFHSSFQATQGGLSLNIGVKD----------------------------------R-------------------- 190 (568)
Q Consensus 165 e~w~Gf~~Svr~~~~~l~LniDvs~----------------------------------~-------------------- 190 (568)
|+|+|||+||||++++|+||||++| .
T Consensus 260 e~wrGffqSvRpa~~rLlLNvdvs~~aF~k~~~~~~~~~~~~~~~~~p~~lid~l~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1046)
T 4f1n_A 260 YLLQGFTVSLTHVYGGVALNTVSVPAPFIKHTKYLPGDPRFKNNEKEQFTLMDWIIECYHQSKAIRDIRYNPKTAPPPSV 339 (1046)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCTTSHHHHHCTTCCCCHHHHHHHHHHHHHHHHSSSCTTTTSCCCCS
T ss_pred EEEEeEeeeEEecCCceEEEEeccceeEEeccccCcccccccccccCCccHHHHHHHHhccccccccccccccccCCCch
Confidence 9999999999999999999999988 0
Q ss_pred ----------C----------------C-------------------------------CC---Cc--------------
Q 048669 191 ----------N----------------D-------------------------------DV---KC-------------- 196 (568)
Q Consensus 191 ----------~----------------~-------------------------------~~---~g-------------- 196 (568)
. . .| ++
T Consensus 340 ~d~~~f~~~~~kl~k~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~~~a~~~~F~~~~~~~~~~~~~~~g~~~ 419 (1046)
T 4f1n_A 340 KDLNYFVEKNTDISALLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTRESAVSMRFNVLESSLKKNSAPKPNEKP 419 (1046)
T ss_dssp SHHHHHHHHCHHHHHHHTTCEECCTTCC--------------CCCEECCEECSSCSSSCC--------------------
T ss_pred hhhhhhhHHHHHHHHHhCCCEEEEEecCccccccccccccccccceEEeeccCCCCCceEEeccCCcccccccccCCcCc
Confidence 0 0 01 11
Q ss_pred eEEehHHHHHhhcCCcccCCCCCceEEeCCCCCCeeEeccceeecCCccccccCCHHHHHHHHHHhcCChHHHHHHhhcc
Q 048669 197 VDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKMKIITDD 276 (568)
Q Consensus 197 ~~iSv~dYf~~~Y~i~L~~~p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~kL~~~q~~~mi~~t~~~P~~R~~~I~~~ 276 (568)
++|||+|||+++||++|+| |++|||++|++ .+|||||||.|++||+|+++|++ +++||++||++|.+|++.|.+.
T Consensus 420 ~~iTVadYFk~kYni~Lky-P~LPcV~VG~~--~~ylPmElC~I~pGQr~~kKL~~--ts~MIKfAa~rP~eR~~~I~~~ 494 (1046)
T 4f1n_A 420 ININTIDYFKRKYDITLKY-PDMKLVNLGGK--NDVVPPECLTIVPGQKLKGQIFD--TKTYIDFSAIRPTEKFDLISRL 494 (1046)
T ss_dssp ---CHHHHHHHHSCCCCSC-TTSCCEECSTT--TCEECGGGCCBCTTCBCCSCCCC--HHHHHHHHCCCHHHHHHHHHHH
T ss_pred eEEEHHHHHHHHhCcccCC-CCCCEEEECCC--CcccccceEEecCCccccccccc--HHHHHHHHccCcHHHHHHHHHH
Confidence 4699999999999999999 99999999985 38999999999999999999998 4899999999999999999983
Q ss_pred chhHHHHHHH-hcCCCCcccccccCeeecCcceEeeeEecCCCeeecc-------------------------------C
Q 048669 277 SMEHYAQVMR-SNKNDSEPMLRSCGISINSRFAQVEGRILSAPRIFVP-------------------------------A 324 (568)
Q Consensus 277 ~~~~f~~~l~-~~~~~~~~~l~~fGl~i~~~~~~V~gRvL~~P~If~~-------------------------------~ 324 (568)
++ +.+. .+..+.+++|++|| +|+++|++|+|||||||.|.|. +
T Consensus 495 ~~----~~~~~~l~~~~~~~l~~FG-~I~~~m~~V~gRVLppP~L~Yg~~~~~~~~~p~~~~~~p~~G~Wnm~~~kf~~~ 569 (1046)
T 4f1n_A 495 SM----PAIKRGLTDSEKEESSAPH-NSAYQFMRVPSRILDAPVVQFKESTFEYKDKSYGTKHEESKGNWNMKGHQFIST 569 (1046)
T ss_dssp HH----HHHHHHTSCCC---------CCSSSCCEEEEEECCCCCEECSSCEECCCCCCSSSSGGGGTTBCCCTTCCCSBC
T ss_pred HH----HhhhccccccccHhHHhcC-CccCceeeEEEEEcCCCeEeecCCcccccccccccccCccCCcccCCCCEEecC
Confidence 21 1222 24445678999999 9999999999999999999432 2
Q ss_pred c-ccCceEEEEeCCc---------ccHHHHHHHHHHHhhhcCCCCCCCC-cccccC---c---------cccCC------
Q 048669 325 A-KIDHWAVANFSGG---------CDIRSLCRDLIRFGEMKRISTSPPL-NVFEEN---P---------QFRRA------ 375 (568)
Q Consensus 325 ~-~l~~W~vv~~~~~---------~~~~~f~~~l~~~~~~~Gm~~~~p~-~v~~~~---~---------~~~~~------ 375 (568)
+ .+.+|.++++... .++++|++.|.+.|+.+||.+..|. .+.... | ..+..
T Consensus 570 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~Gm~i~~~~~p~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 649 (1046)
T 4f1n_A 570 PAKQVNLRAIFINNANTAPPASMESELDISMDKFASDVKQLGVDFNVSGKPILINQFGPPIKKFQGGGRGGRGGRGSRGG 649 (1046)
T ss_dssp CSSCEEEEEEEEECSSSCCCGGGHHHHHHHHHHHHHHHHTTTCCEECCSCCEEEESCCSCBC------------------
T ss_pred CcccceEEEEEEcCCCcccccccHHHHHHHHHHHHHHHHhcCCccCCCCCCccccccccccccccccccccccccccccc
Confidence 2 2346666554321 2678999999999999999997641 110000 0 00000
Q ss_pred ------------CChHHHHHHHHHHHHhccCCCeEEEEEcCCCC-CchhhhhhhhhcccccCceeeEeecc---ccChhH
Q 048669 376 ------------PAPVRVDRMFEQMKQKFEKRPCFLLCLLPDRK-DSDLYGSWKRKTLSEFGIFNQCLAPT---KVNEQY 439 (568)
Q Consensus 376 ------------~~~~~~~~~~~~~~~~~~~~~~lvlvilp~~~-~~~~Y~~IK~~~d~~~GV~TQcv~~~---k~~~q~ 439 (568)
......+..+..+.+.. ..++|||||||+ + ++++|+.||++||+++||+||||+.+ |.+.||
T Consensus 650 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~lvl~Ilp~-~~~~~~Y~~IK~~~d~~~gV~TQcv~~~t~~k~~~q~ 727 (1046)
T 4f1n_A 650 RGGRGAPSGPPTFETSPGEISLLNLLENI-PSNTYILYVLRR-GNDSAVYDRLKYITDLKFGALNSCVVWDNFKKNSIQY 727 (1046)
T ss_dssp ----------CCCBCCTTHHHHHHHHHTC-CTTEEEEEEESS-SCCHHHHHHHHHHHTTTTCCCEEEEEHHHHTTCCHHH
T ss_pred cccccccccccccccchHHHHHHHHHHhc-CCCCEEEEEecC-CCCchHHHHHHHHhhccCCcccEEEehhhhccccHHH
Confidence 00012344444444443 468999999998 5 67899999999999999999999985 568899
Q ss_pred HHHHHHHHHhhcCCcceeccccccCCCCCcC----CCCEEEEEeeeccCCCCCCCCCeEEEEEeeCCCCccceeeEEEEe
Q 048669 440 LMNVLLKINAKLGGLNSLLAIEQSKNLPLVS----KVPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRS 515 (568)
Q Consensus 440 ~~NI~lKIN~KLGG~n~~l~~~~~~~~p~l~----~~~tMivG~DV~Hp~~~~~~~pSiaavVaS~d~~~~t~y~~~~~~ 515 (568)
++|||||||+||||+||.|+.. .++.+. ..+|||||+||+|++++ ..+||||||||+| .++++|++.+++
T Consensus 728 ~~NI~lKiN~KLGG~n~~l~~~---~~~~l~~~~~~~ptMiiG~DVtH~p~~--~~~SiaavVaS~d-~~~t~y~s~~~~ 801 (1046)
T 4f1n_A 728 NSNVVMKMNLKLLGSNHSLSIE---NNKLLIDKESNLPILVLGSDVTHYPEK--DQNSIASLVGSYD-DKFTQFPGDYML 801 (1046)
T ss_dssp HHHHHHHHHHHTTCBCCEECTT---GGGGGEETTTTEECEEEEEEEECCSST--TCEEEEEEEECCS-SSCCCCCEEEEE
T ss_pred HHHHHHHHHHhcCCeeeecccc---ccccccccccCCceEEEeeeeecCCCC--CCCeeeEEEEEEC-CCcCeEeeEEEE
Confidence 9999999999999999999743 234432 34799999999995443 2469999999999 599999999999
Q ss_pred cCC-ccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCCCEEEEEecCCCC
Q 048669 516 QST-KLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFRSTLTW 567 (568)
Q Consensus 516 Q~~-~~Eii~~l~~p~~~~~~~~~~~~~L~~f~~~n~~~lP~~IIiYRDGVS~ 567 (568)
|.+ ++|+|++|.. ||.++|++|++.|++.+|++|||||||||+
T Consensus 802 Q~~~~~Eii~~L~~---------~~~~~L~~y~~~n~~~lP~~IIiYRDGVSE 845 (1046)
T 4f1n_A 802 QDGPGEEIITNVGS---------LMLNRLKIYQKHNNGKLPTKIMYFRDGVSV 845 (1046)
T ss_dssp EEEETCCSCTTGGG---------GHHHHHHHHHHTTTTCCCSSEEEEEESCCG
T ss_pred ecCCCccHHHHHHH---------HHHHHHHHHHHhcCCCCCcEEEEEecCCch
Confidence 998 9999999874 999999999998558999999999999996
No 3
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=100.00 E-value=1.1e-62 Score=552.92 Aligned_cols=396 Identities=15% Similarity=0.124 Sum_probs=297.0
Q ss_pred EEEEEEeeccC----hHHHHHHhcCCCCcChHHHHHHHHHHHhhhhhhcccccchhhhhhcccccceeeecccccCCCCC
Q 048669 80 KVEISVAAKIP----LQAIAAALHGQESQNSREAFRVLDIILRQHAAKHMIDHRSISIFLATSYRGCFLVRQSFFQNEPR 155 (568)
Q Consensus 80 ~v~i~~~~~i~----~~~l~~~l~g~~~~~~~~~iq~Lniilr~~~~~~~~~~~~~~~~~~~~~~~~~~~gr~fF~~~~~ 155 (568)
+|+|++++++. .+ .++++|+++.+|++. . +.+.++||+||++...
T Consensus 77 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~--~----------------l~~~~igr~~~~~~~~ 125 (706)
T 1yvu_A 77 IVELKRVGEEEFRGFQN-------------ERECQELFRDFLTKT--K----------------VKDKFISDFYKKFRDK 125 (706)
T ss_dssp CEEEEECCCEECCCCSC-------------HHHHHHHHHHHHHHT--C----------------HHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEEeeccCCCC-------------CHHHHHHHHHHHHHc--C----------------ChHhhhCccccCcccc
Confidence 56799999988 44 388999999999877 2 5677899999998643
Q ss_pred CcccC---CCcEEEeeceEEEEEecC-CceeEEEeeee---------------c-----------CCCC-----------
Q 048669 156 SFFDL---GGGVLGCWGFHSSFQATQ-GGLSLNIGVKD---------------R-----------NDDV----------- 194 (568)
Q Consensus 156 ~~~~l---~~gle~w~Gf~~Svr~~~-~~l~LniDvs~---------------~-----------~~~~----------- 194 (568)
+.+ .++||+||||.+||+.++ ++++||+|++| . +-++
T Consensus 126 --~~i~~~~~~l~iwPG~~tsi~~~e~~~~~L~~DvshKvlr~~Tvld~l~~~~~~~~~~~~~y~n~ty~~riddi~~~~ 203 (706)
T 1yvu_A 126 --ITVQGKNRKIALIPEVNEKVLKSEEGYFLLHLDLKFRIQPFETLQTLLERNDFNPKRIRVKPIGIDFVGRVQDVFKAK 203 (706)
T ss_dssp --HEEECSSCEEEEEEEEEEEEEEBSSSCEEEEEEEEEEEEESSCHHHHHHHCCCCCTTCEEEETTCCCCEEEEEEEEST
T ss_pred --ccccCCCCcEEEccCeEEEEEeccCCCeEEEEEeeeeecccchHHHHHHHhhhcchhHHhhcccceeccccCcccccC
Confidence 566 468999999999999999 99999999999 0 0000
Q ss_pred --------CceEEehHHHHHhhcCCc--------ccCCCCCceEEeCCCCC-CeeEeccceeecCCccccccCCHHHHHH
Q 048669 195 --------KCVDVTVFDYFVNHRRIN--------LCFSGDFPCIDVGKPRK-PTYIPIELCSLLSLQRYTKALTVFQRSA 257 (568)
Q Consensus 195 --------~g~~iSv~dYf~~~Y~i~--------L~~~p~lPll~~g~~~~-~~ylP~Elc~i~~gQ~~~~kL~~~q~~~ 257 (568)
+|.+|| ||+++|++. .+. +.+|+++...+.. +++++| ||.+++ |+++|+++
T Consensus 204 ~~P~~~f~~g~~iS---Yyk~~~~~~q~ll~~r~~~~-~~~~~~v~~~~~~p~~lL~p-lc~~t~-------Ltd~q~~~ 271 (706)
T 1yvu_A 204 EKGEEFFRLCMERS---THKSSKKAWEELLKNRELRE-KAFLVVLEKGYTYPATILKP-VLTYEN-------LEDEERNE 271 (706)
T ss_dssp TSCHHHHHHHHHTC---SSHHHHHHHHHHHHCHHHHH-HCEEEEETTSCEEEGGGEEE-CCCCC-------------HHH
T ss_pred CCcceEecCCCCcc---eEecccCcchhhhhcccccc-CCceEEeccCCCCCceeecc-ccccCC-------CCHHHHHH
Confidence 123456 888888765 445 5565555433211 455555 887776 99999999
Q ss_pred HHHHhcCChHHHHHHhhccchhHHHHHHHhcCCCCcccccccCeeecCcceEeeeEecCCCeeec---------------
Q 048669 258 LVEKSQQKPQEKMKIITDDSMEHYAQVMRSNKNDSEPMLRSCGISINSRFAQVEGRILSAPRIFV--------------- 322 (568)
Q Consensus 258 mi~~t~~~P~~R~~~I~~~~~~~f~~~l~~~~~~~~~~l~~fGl~i~~~~~~V~gRvL~~P~If~--------------- 322 (568)
|+++|+.+|++|++.|++ .++.+ +++|++|||+|+++|++|+|||||+|.|.+
T Consensus 272 mik~t~~~P~~R~~~i~~--------~~~~~----~~~L~~fGi~i~~~~~~v~gRVLp~P~i~~~~g~~~~~~~~~~~~ 339 (706)
T 1yvu_A 272 VADIVRMEPGKRLNLIRY--------ILRRY----VKALRDYGWYISPEEERAKGKLNFKDTVLDAKGKNTKVITNLRKF 339 (706)
T ss_dssp HTSTTSCCHHHHHHHHHH--------HHHHH----HHHHHTTTEEECSSCEECCEECCCCCCEECSSCCEECCSSCCHHH
T ss_pred HHHHHccCHHHHHHHHHH--------HHHHH----HHHHHHcCCEECCceeecccEEcCCceeecCCCCcceeccCCccc
Confidence 999999999999999999 44432 478999999999999999999999999852
Q ss_pred --------cCcccCc---eEEEEeCCcccHHHHHHHHHHHhhhcCCCCCCCCcccccCccccCCCChHHHHHHHHHHHHh
Q 048669 323 --------PAAKIDH---WAVANFSGGCDIRSLCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQK 391 (568)
Q Consensus 323 --------~~~~l~~---W~vv~~~~~~~~~~f~~~l~~~~~~~Gm~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (568)
.++.++. |.+++..+..++++|++.|.+.|+.+||++..|..+... .+.++++++.+.+.
T Consensus 340 ~~~~~~~~~~~~l~~~~lW~~i~~~~~~~~~~f~~~L~~~~~~~G~~i~~p~~~~~~---------~~~~~~~~~~l~~~ 410 (706)
T 1yvu_A 340 LELCRPFVKKDVLSVEIISVSVYKKLEWRKEEFLKELINFLKNKGIKLKIKGKSLIL---------AQTREEAKEKLIPV 410 (706)
T ss_dssp HHHCCCCCSCSEEEEEEEEEEC-----CHHHHHHHHHHHHHHTTTCEEEEEEEEEEE---------CSSTTHHHHHHHHH
T ss_pred ccccCceecccccccceEEEEEecchhHHHHHHHHHHHHHHHHcCceecCCcccccc---------chhHHHHHHHHHHH
Confidence 1233456 744433222368999999999999999999776432110 12445566666654
Q ss_pred c--cCCCeEEEEEcCCCC-------CchhhhhhhhhcccccCceeeEeeccc----cChhHHHHHHHHHHhhcCCcceec
Q 048669 392 F--EKRPCFLLCLLPDRK-------DSDLYGSWKRKTLSEFGIFNQCLAPTK----VNEQYLMNVLLKINAKLGGLNSLL 458 (568)
Q Consensus 392 ~--~~~~~lvlvilp~~~-------~~~~Y~~IK~~~d~~~GV~TQcv~~~k----~~~q~~~NI~lKIN~KLGG~n~~l 458 (568)
. ..+++|||||+|+ + +.+.|+.||++|+ +.||+||||..++ .+.|+++|||||||+||||+||.|
T Consensus 411 ~~~~~~~qlvlvIlp~-~~~~~~~~~~~~Y~~IK~~~~-~~GI~TQcv~~~tl~~~~~~q~~~NI~lkiN~KLGG~nw~L 488 (706)
T 1yvu_A 411 INKIKDVDLVIVFLEE-YPKVDPYKSFLLYDFVKRELL-KKMIPSQVILNRTLKNENLKFVLLNVAEQVLAKTGNIPYKL 488 (706)
T ss_dssp HTTTSSCSEEEEEEC-----------CHHHHHHHHHHH-HTTCCCEEEEHHHHHHSCHHHHHHHHHHHHHHHTTCCSCEE
T ss_pred hcccCCCcEEEEEECC-ccccccccCccHHHHHHHHHh-cCCCceEEEehhhccccchHHHHHHHHHHHHHHhCCeeeee
Confidence 3 2478999999998 6 6899999999965 9999999999753 357899999999999999999999
Q ss_pred cccccCCCCCcCCCCEEEEEeeeccCCCCCCCCCeEEEEEeeCCCCc--cceeeEEEEecCCccccccccCCCCCCCChH
Q 048669 459 AIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPI--LSRYRASVRSQSTKLEMIDSLFKPLPNKDDA 536 (568)
Q Consensus 459 ~~~~~~~~p~l~~~~tMivG~DV~Hp~~~~~~~pSiaavVaS~d~~~--~t~y~~~~~~Q~~~~Eii~~l~~p~~~~~~~ 536 (568)
.. | ...+|||||+||+||+.+. ..||+||+|||+| .. +++|.+....| .++|++++
T Consensus 489 ~~------~--~~~~tmiIGiDVsH~~~~~-~~pSv~g~vas~d-~~g~~~~~~~~~~~q-~~~ei~~~----------- 546 (706)
T 1yvu_A 489 KE------I--EGKVDAFVGIDISRITRDG-KTVNAVAFTKIFN-SKGELVRYYLTSYPA-FGEKLTEK----------- 546 (706)
T ss_dssp SC------C--TTCCSEEEEECEEECCCSS-SCCCEEEEEEEEC-TTSCEEEEEEEEECS-CTTHHHHH-----------
T ss_pred cc------C--CCCceEEEEEEEeccCCCC-CCceEEEEEEEEc-CCCCEEEEEEEeccc-ccchHHHH-----------
Confidence 62 2 1368999999999998543 3599999999998 34 57888887655 47788755
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEEecCCCC
Q 048669 537 GIVRELLVDFYKSSGQTKPSQIIIFRSTLTW 567 (568)
Q Consensus 537 ~~~~~~L~~f~~~n~~~lP~~IIiYRDGVS~ 567 (568)
++..+|+.|++.+ +.+|+||||||||||.
T Consensus 547 -l~~~~l~~~~~~~-~~~P~rIIiyRDGVse 575 (706)
T 1yvu_A 547 -AIGDVFSLLEKLG-FKKGSKIVVHRDGRLY 575 (706)
T ss_dssp -HHHHHHHHHHHTT-CCTTCEEEEEESSCCC
T ss_pred -HHHHHHHHHHHhc-CCCCcEEEEEeCCCCc
Confidence 5566777887654 7999999999999995
No 4
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=100.00 E-value=3.7e-56 Score=499.88 Aligned_cols=443 Identities=12% Similarity=0.091 Sum_probs=305.6
Q ss_pred ceeeCccccccC------------CCccccCccc--eeecCCCCCCceEEEEEeCCCCCCccCCCCCCCCCCCCCchhhh
Q 048669 4 SVFIGPEESKRT------------SKLGPTGEKS--LFTISALPHKKMEFLVLLDNPSSYRTTSNDSPDGHGSNNERDRK 69 (568)
Q Consensus 4 ~~~~~p~~~~~~------------~~~~~DG~~~--l~t~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (568)
||||.|+++.+. |.++|||. . ||++++|+ .
T Consensus 26 ~v~~~p~~~~~~~~~~~~~~~~~~g~~~fdg~-~~~l~~~~~l~----------~------------------------- 69 (771)
T 1u04_A 26 RLFNDPEEELQKEGYSIYRLAYENVGIVIDPE-NLIIATTKELE----------Y------------------------- 69 (771)
T ss_dssp EC------------CCHHHHHHHTTEEEEETT-TTEEEESSCCC----------C-------------------------
T ss_pred EeecCChHHHHHHHHHHHHHHhhcCcEEecCc-ceeeeccceec----------c-------------------------
Confidence 899999999541 67899995 7 99999996 1
Q ss_pred hhccCCCceEEEEEEEeeccChHHHHHHhcCCCCcChHHHHHHHHHHHhhhhhhcccccchhhhhhcccccc-----eee
Q 048669 70 RRRVSQSKTFKVEISVAAKIPLQAIAAALHGQESQNSREAFRVLDIILRQHAAKHMIDHRSISIFLATSYRG-----CFL 144 (568)
Q Consensus 70 ~~~~~~~~~~~v~i~~~~~i~~~~l~~~l~g~~~~~~~~~iq~Lniilr~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 144 (568)
++..++|+++.+++++ +|++|+|+|+.+.. ++ +..
T Consensus 70 -----~~~~~~~~~~~~~~~~-------------------~~~~n~i~r~~l~~----------------~~~~~~~l~~ 109 (771)
T 1u04_A 70 -----EGEFIPEGEISFSELR-------------------NDYQSKLVLRLLKE----------------NGIGEYELSK 109 (771)
T ss_dssp -----SSCCEEEEEECGGGSC-------------------HHHHHHHHHHHHHH----------------TTCSHHHHHH
T ss_pred -----CCCeEEEEEEEcceec-------------------HHHHHHHHHHHHHH----------------cccchHHHHH
Confidence 1334889999998877 67899999999986 56 789
Q ss_pred ecccccCCCCCCcccCCCcEEEeeceEEEEEecCCceeEEEeeee---------------------------------c-
Q 048669 145 VRQSFFQNEPRSFFDLGGGVLGCWGFHSSFQATQGGLSLNIGVKD---------------------------------R- 190 (568)
Q Consensus 145 ~gr~fF~~~~~~~~~l~~gle~w~Gf~~Svr~~~~~l~LniDvs~---------------------------------~- 190 (568)
+||+||++ +.+ +.+++|+||.+||+.++++++|++|++| +
T Consensus 110 ~~r~~~~~-----~~~-~~~~~~~~~~tsi~~~e~~~ll~~di~hkv~r~~t~~d~~~~~~~~~~~~~~~~~g~~~~~~~ 183 (771)
T 1u04_A 110 LLRKFRKP-----KTF-GDYKVIPSVEMSVIKHDEDFYLVIHIIHQIQSMKTLWELVNKDPKELEEFLMTHKENLMLKDI 183 (771)
T ss_dssp HHTTTSCC-----EEE-TTEEEEEEEEEEEEECSSCEEEEEEEEEEEEESSCHHHHTTTCHHHHHHHHHHSTTTCEEEET
T ss_pred HhhhcCCC-----ccc-cccEEEECceeeEEecCCceEEEEEeeeeEeehhHHHHHHHHHHHHHHHHHHhccCcEEeeec
Confidence 99999987 233 4589999999999999999999999999 0
Q ss_pred ----------C-C------C----------C-----Cc--eEEehHHHHHhhcCCcccCCCCCceEEeCCC-------CC
Q 048669 191 ----------N-D------D----------V-----KC--VDVTVFDYFVNHRRINLCFSGDFPCIDVGKP-------RK 229 (568)
Q Consensus 191 ----------~-~------~----------~-----~g--~~iSv~dYf~~~Y~i~L~~~p~lPll~~g~~-------~~ 229 (568)
+ . + + ++ +++++.+||.++|++ ++ ++||+|++..+ .+
T Consensus 184 ~~~~~~vy~~n~~~Y~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~y~i--~d-~~QPllvs~~~~~~~~~~~~ 260 (771)
T 1u04_A 184 ASPLKTVYKPCFEEYTKKPKLDHNQEIVKYWYNYHIERYWNTPEAKLEFYRKFGQ--VD-LKQPAILAKFASKIKKNKNY 260 (771)
T ss_dssp TSTTCCEEEECBCTTSSCBCEECCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHCS--CC-TTSCEEEEEESCC-----CC
T ss_pred cccceeEeecccceeecCCccccCCCChhheeceeecCCCCCcchhHHHHHhcCc--Cc-CCCCeEEecchhhccCCCCc
Confidence 0 0 0 0 11 234555666688995 88 99999998532 34
Q ss_pred CeeEeccceeecCCccccccCCHHHHHHHHHHhcCChHHHHHHhhccchhHHHHHH-----HhcCCCCcccccccCeeec
Q 048669 230 PTYIPIELCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKMKIITDDSMEHYAQVM-----RSNKNDSEPMLRSCGISIN 304 (568)
Q Consensus 230 ~~ylP~Elc~i~~gQ~~~~kL~~~q~~~mi~~t~~~P~~R~~~I~~~~~~~f~~~l-----~~~~~~~~~~l~~fGl~i~ 304 (568)
.+||+||||.+|| ...+++...+++|..+|+..|++|.+.|.+ |++.+ +.. .+..+.|+.|| .++
T Consensus 261 ~i~LiPELc~~TG---~~~~~~~~~MK~la~~trl~P~~R~~~l~~-----~~~~l~~~~~~~~-~~~~~~l~~~~-~l~ 330 (771)
T 1u04_A 261 KIYLLPQLVVPTY---NAEQLESDVAKEILEYTKLMPEERKELLEN-----ILAEVDSDIIDKS-LSEIEVEKIAQ-ELE 330 (771)
T ss_dssp CEEECTTTEEEEE---EGGGC----CCHHHHHHCCCHHHHHHHHHH-----HHHHCCCSSBCSS-CCEEEEEECCG-GGG
T ss_pred eeeechHhhhhcC---chhhhhHHHHHHHHHHHCCCHHHHHHHHHH-----HHHHhhhhhhcCC-HHHHHHHhhhh-ccC
Confidence 7999999999998 233345556679999999999999999999 66666 332 23456787888 577
Q ss_pred CcceEeeeEecCCCeeec---------------------cC----------cccCceEEEEeCCcccHHHHH--------
Q 048669 305 SRFAQVEGRILSAPRIFV---------------------PA----------AKIDHWAVANFSGGCDIRSLC-------- 345 (568)
Q Consensus 305 ~~~~~V~gRvL~~P~If~---------------------~~----------~~l~~W~vv~~~~~~~~~~f~-------- 345 (568)
.+ +.|.++++.+-.|+. .+ ..|..|.+++......+++|+
T Consensus 331 ~~-~~v~~~~~~~~~i~~~~~~~~~~adW~~~~~~~~~~~~~~~p~~l~~~~~i~~wil~~~~~~~~~~~f~~~~f~~~~ 409 (771)
T 1u04_A 331 NK-IRVRDDKGNSVPISQLNVQKSQLLLWTNYSRKYPVILPYEVPEKFRKIREIPMFIILDSGLLADIQNFATNEFRELV 409 (771)
T ss_dssp SS-EEEECSSSCEEESCCC--------CGGGGSCCCCCCCCSBCCTHHHHCCCCCEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred cC-cccccccccccceeecCcCCCccCCcchhhCCCcceecccchhhhhcccccceEEEEeCCchHHHHHHHHHHhhhHH
Confidence 66 777766655422311 11 223347776654445678887
Q ss_pred -HHHHHHhhhcCCC---------CCCCCcccccCcc-cc-CCCChHHHHHHHHHHHHhcc-CCCeEEEEEcCCCCCchhh
Q 048669 346 -RDLIRFGEMKRIS---------TSPPLNVFEENPQ-FR-RAPAPVRVDRMFEQMKQKFE-KRPCFLLCLLPDRKDSDLY 412 (568)
Q Consensus 346 -~~l~~~~~~~Gm~---------~~~p~~v~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~-~~~~lvlvilp~~~~~~~Y 412 (568)
+.|.++++.+|+. +.-|..-....+. .. ....+++++.+++.+.+.+. ..++||||+++..++.+.|
T Consensus 410 ~~~l~~~~~~~~~~~~~~~~~~~i~~p~~~~~~~~~~i~~dl~~~~~i~~~l~~~~~~~~~~~~~lvlv~l~~~~~~d~Y 489 (771)
T 1u04_A 410 KSMYYSLAKKYNSLAKKARSTNEIGLPFLDFRGKEKVITEDLNSDKGIIEVVEQVSSFMKGKELGLAFIAARNKLSSEKF 489 (771)
T ss_dssp HHHCC-----------------------------CEEEEECTTSHHHHHHHHHHHHHHHTTCSCEEEEEEECTTSCHHHH
T ss_pred HHHHHHHhhcccchhhcccccccccCCCcccccCcceecccccchHHHHHHHHHHHHhccCCCCCEEEEEEcCCCCcchH
Confidence 5555555444432 2222210000000 00 00123567788888766542 4579987777431567899
Q ss_pred hhhhhhcccccCceeeEeecccc-------C-----hhHHHHHHHHHHhhcCCcceeccccccCCCCCcCCCCEEEEEee
Q 048669 413 GSWKRKTLSEFGIFNQCLAPTKV-------N-----EQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMD 480 (568)
Q Consensus 413 ~~IK~~~d~~~GV~TQcv~~~k~-------~-----~q~~~NI~lKIN~KLGG~n~~l~~~~~~~~p~l~~~~tMivG~D 480 (568)
+.||++| ++.||+||||..++. + .+++.|||+||||||||+||.|+ .|. .+|||||+|
T Consensus 490 ~~IK~~~-~~~gIpTQcV~~~Tl~~~~~k~~~~~l~~sia~NIalqIn~KLGG~pW~L~------~p~---~~tmiIGiD 559 (771)
T 1u04_A 490 EEIKRRL-FNLNVISQVVNEDTLKNKRDKYDRNRLDLFVRHNLLFQVLSKLGVKYYVLD------YRF---NYDYIIGID 559 (771)
T ss_dssp HHHHHHH-HHTTEEEEEEEHHHHHHCEETTEEEEECHHHHHHHHHHHHHHTTCBCCEES------CCC---SSSEEEEEE
T ss_pred HHHHHHH-hcCCcccEEEecccccCccccccccchhHHHHHHHHHHHHHHhCCcceeec------CCC---CCEEEEEEE
Confidence 9999997 799999999997531 1 67899999999999999999996 243 689999999
Q ss_pred eccCCCCCCCCCeEEEEEeeCCCCccceeeEEEEecCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCCCEEEE
Q 048669 481 VSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIII 560 (568)
Q Consensus 481 V~Hp~~~~~~~pSiaavVaS~d~~~~t~y~~~~~~Q~~~~Eii~~l~~p~~~~~~~~~~~~~L~~f~~~n~~~lP~~IIi 560 (568)
|+||+++. ..+|+||+|+|.|+ ..++|.+.+..|.++ |.++ +. .|++++|.+|++.|++.+|+||||
T Consensus 560 V~H~~~~~-~svs~~A~V~s~dg-~~~~~~s~~~~~~~~-E~i~-l~---------~~l~~~L~~y~~~n~~~lP~RIIi 626 (771)
T 1u04_A 560 VAPMKRSE-GYIGGSAVMFDSQG-YIRKIVPIKIGEQRG-ESVD-MN---------EFFKEMVDKFKEFNIKLDNKKILL 626 (771)
T ss_dssp EEEECCTT-TCEEEEEEEEETTS-CEEEEEEEECCCCSS-SSCC-HH---------HHHHHHHHHHHHTTCCCTTCEEEE
T ss_pred EEcCCCCC-CceEEEEEEECCCC-CEEEEEEEEeecCCc-cEEc-HH---------HHHHHHHHHHHHHhCCCCCCEEEE
Confidence 99997553 46888999999995 888998866555554 4454 44 599999999999855789999999
Q ss_pred EecCC
Q 048669 561 FRSTL 565 (568)
Q Consensus 561 YRDGV 565 (568)
|||||
T Consensus 627 yRDG~ 631 (771)
T 1u04_A 627 LRDGR 631 (771)
T ss_dssp ECSBC
T ss_pred EcCCC
Confidence 99996
No 5
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=100.00 E-value=1.8e-49 Score=438.87 Aligned_cols=338 Identities=16% Similarity=0.104 Sum_probs=257.5
Q ss_pred CCcEEEeeceEEEEEecC-CceeEEEeeee------------------------------------cCC----CCCceEE
Q 048669 161 GGGVLGCWGFHSSFQATQ-GGLSLNIGVKD------------------------------------RND----DVKCVDV 199 (568)
Q Consensus 161 ~~gle~w~Gf~~Svr~~~-~~l~LniDvs~------------------------------------~~~----~~~g~~i 199 (568)
|.|.|+++|+.-.|.++. +++.|.||+.| ++. .+-...|
T Consensus 142 ~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r~~~~~~~~~~l~~~~~~~~~v~~~y~~~~~~~~~~~~~~p~~~~l~~~~ 221 (685)
T 3ho1_A 142 GPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRILCEMSLEAWLAQGHPLPKRVRNAYDRRTWELLRLGEEDPKELPLPGGL 221 (685)
T ss_dssp ETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEEECSCHHHHHHHSCCCCSEEEESSSCCEECCCEEECCCTTCC------
T ss_pred CCceEEecceEEEEEECCCCcEEEEEeeheeecChhhHHHHHHhCCCccHHHhhhcccceEEEeecccCCchheecCCCc
Confidence 789999999999999998 89999999999 011 1112379
Q ss_pred ehHHHHHhhcCCcccCCCCCceEEeCCC----CC-----CeeEeccceeecCCccccccCCHHHHHHHHHHhcCChHHHH
Q 048669 200 TVFDYFVNHRRINLCFSGDFPCIDVGKP----RK-----PTYIPIELCSLLSLQRYTKALTVFQRSALVEKSQQKPQEKM 270 (568)
Q Consensus 200 Sv~dYf~~~Y~i~L~~~p~lPll~~g~~----~~-----~~ylP~Elc~i~~gQ~~~~kL~~~q~~~mi~~t~~~P~~R~ 270 (568)
|++|||+++|.+ +. -++|+|+.-++ .+ .+||.|||| +++ |++.+.+ .+|+.+|++|+
T Consensus 222 s~~~y~~~k~~~--~~-~~~~~vv~~~~~~~~~~~i~~~~~~l~p~l~-m~~-------l~~~~~~---~~trlsP~~R~ 287 (685)
T 3ho1_A 222 SLLDYHASKGRL--QG-REGGRVAWVADPKDPRKPIPHLTGLLVPVLT-LED-------LHEEEGS---LALSLPWEERR 287 (685)
T ss_dssp CSTTTTTTTSTT--TT-SCCCSEEEECSCC---CCEEEETTSEEEECC-TTT-------TSSCSSC---CCCCCCHHHHH
T ss_pred cHHHHHhhcccc--cc-cCCceEEEEeccccCCCcceeeeeeechHhH-HHH-------Hhhhhhh---ccccCCHHHHH
Confidence 999999999887 87 89999974321 22 368999999 888 8887665 68999999999
Q ss_pred HHhhccchhHHHHHHHhcCCCCcccccccCeeecCcceEeeeEecCCCeeecc----------------CcccCceEEEE
Q 048669 271 KIITDDSMEHYAQVMRSNKNDSEPMLRSCGISINSRFAQVEGRILSAPRIFVP----------------AAKIDHWAVAN 334 (568)
Q Consensus 271 ~~I~~~~~~~f~~~l~~~~~~~~~~l~~fGl~i~~~~~~V~gRvL~~P~If~~----------------~~~l~~W~vv~ 334 (568)
+++.+ |++. +++.|||+ +++|++|+||+||||+||.. ++. ..|++++
T Consensus 288 ~~l~~-----~~~~----------i~~~~Gl~-~~~~i~v~gRvLppp~I~g~~~~~~~~d~~~~~~~~~~~-~~~ail~ 350 (685)
T 3ho1_A 288 RRTRE-----IASW----------IGRRLGLG-TPEAVRAQAYRLSIPKLMGRRAVSKPADALRVGFYRAQE-TALALLR 350 (685)
T ss_dssp HHHHH-----HHHH----------HHHTTCSC-CCEEEEEEEEECCCCCEESSSBCSSGGGHHHHCCSSCCC-EEEEEEE
T ss_pred HHHHH-----HHHH----------HHHhcCCC-CCCcceEEEEEcCHHHhcCCCCcCCchhhccCcceeccC-ceEEEEe
Confidence 99999 4333 35679999 99999999999999999321 122 3688988
Q ss_pred eCCc-ccHHHHHHHHHHHhhhcCCCCCCCCcccccCccccCCCChHHHHHHHHHHHHhccCCCeEEEEEcCCCCCchhhh
Q 048669 335 FSGG-CDIRSLCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRPCFLLCLLPDRKDSDLYG 413 (568)
Q Consensus 335 ~~~~-~~~~~f~~~l~~~~~~~Gm~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~ 413 (568)
+.+. ..+++|+++|.++|+.+||++..|... +.+. +...+...++.+.+ .++|+||||+|+ ++.+.|+
T Consensus 351 l~~~~~~~~~f~~~L~~va~~~G~~i~~~~~~--~~~~-----d~~~~~~~l~~~~~---~~~qlvvvIlp~-~~~~~y~ 419 (685)
T 3ho1_A 351 LDGAQGWPEFLRRALLRAFGASGASLRLHTLH--AHPS-----QGLAFREALRKAKE---EGVQAVLVLTPP-MAWEDRN 419 (685)
T ss_dssp CSSCCSCCHHHHHHHHHHHHSSSSCEEEEECC--CCGG-----GTHHHHHHHHHHHH---TTCCEEEEEESC-CCHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHhCCcEeccceee--cCCC-----chHHHHHHHHHhhh---cCCCEEEEEECC-CCccHHH
Confidence 8764 478899999999999999999864322 1111 11233444444443 478999999999 7888999
Q ss_pred hhhhhcccccCceeeEeec--cccChhHHHHHHHHHHhhcCCcceeccccccCCCCCcCCCCEEEEEeeeccCCCCCCCC
Q 048669 414 SWKRKTLSEFGIFNQCLAP--TKVNEQYLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKVPTIIFGMDVSHGSPGHSNV 491 (568)
Q Consensus 414 ~IK~~~d~~~GV~TQcv~~--~k~~~q~~~NI~lKIN~KLGG~n~~l~~~~~~~~p~l~~~~tMivG~DV~Hp~~~~~~~ 491 (568)
.||++| .+.||+||||.. .+.+.++++||||||||||||+||.|+. |. .++||||+||+|++.
T Consensus 420 ~IKk~~-~~~GIpTQcV~~tl~k~~~~ia~NIaLkINaKLGG~pW~L~~------P~---~~tmiIGiDVsH~~~----- 484 (685)
T 3ho1_A 420 RLKALL-LREGLPSQILNVPLREEERHRWENALLGLLAKAGLQVVALSG------AY---PAELAVGFDAGGRES----- 484 (685)
T ss_dssp HHHHHH-HHTTCCEEEEESSCCTTCHHHHHHHHHHHHHHHTCCCCEECS------CC---SCSEEEEEEEEETTE-----
T ss_pred HHHHHH-hcCCCccEEEecccccccHhHHHHHHHHHHHHhCCeeEEecC------CC---CCeEEEEEEEEcCCC-----
Confidence 999986 799999999992 2356788999999999999999999962 43 689999999999872
Q ss_pred CeEEEEEeeCCC-CccceeeEEEEecCCccccccccCCCCCCCChHHHHHHHHHHHHHHhCCCCCCEEEEEecCCC
Q 048669 492 PSVAAVVSSRNW-PILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSGQTKPSQIIIFRSTLT 566 (568)
Q Consensus 492 pSiaavVaS~d~-~~~t~y~~~~~~Q~~~~Eii~~l~~p~~~~~~~~~~~~~L~~f~~~n~~~lP~~IIiYRDGVS 566 (568)
.+++|++++++. ...++| +.++.|...++.+++|. .|+.++|.+|++.| +.+|+|||||||||+
T Consensus 485 ~~~~~~aav~~~dg~~~~~-~~~~~Q~~e~l~~~~L~---------~~l~eaL~~Y~k~n-g~lP~RIIIyRDGV~ 549 (685)
T 3ho1_A 485 FRFGGAACAVGGDGGHLLW-TLPEAQAGERIPQEVVW---------DLLEETLWAFRRKA-GRLPSRVLLLRNGRV 549 (685)
T ss_dssp EEEEEEEEEECC--CCCEE-ECCCCCCSCCCHHHHHH---------HHHHHHHHHHHHHH-SSCCSEEEEEECSSS
T ss_pred CccceEEEEEECCCCEEEe-EEEEccCCcEecHHHHH---------HHHHHHHHHHHHHh-CCCCcEEEEEeCCCC
Confidence 355555554441 244554 33456654333445665 69999999999997 799999999999993
No 6
>2yha_A Post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; HET: GOL; 1.85A {Neurospora crassa} PDB: 2xdy_A
Probab=100.00 E-value=6.3e-47 Score=400.31 Aligned_cols=224 Identities=24% Similarity=0.389 Sum_probs=184.8
Q ss_pred ecc-CcccCceEEEEeCCc---ccHHHHHHHHHHHhhhcCCCCCCCCcccccCccccCCCChHHHHHHHHHHHHhccCCC
Q 048669 321 FVP-AAKIDHWAVANFSGG---CDIRSLCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRP 396 (568)
Q Consensus 321 f~~-~~~l~~W~vv~~~~~---~~~~~f~~~l~~~~~~~Gm~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (568)
|++ ++++++|+++++.+. ..+++|++.|.+.|+.+||.+..|........ ..+.+..+ .++.+.+. .++
T Consensus 7 f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~---~~~~~~~~--~~~~~~~~--~~~ 79 (388)
T 2yha_A 7 VARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMS---VPGSEKEF--FAKVKELM--SSH 79 (388)
T ss_dssp CSBCCSCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEE---CCSSHHHH--HHHHHHHH--HTC
T ss_pred eccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecC---CCchHHHh--HHHHhhcc--CCC
Confidence 666 788999999999643 37999999999999999999988753211000 11122222 22333221 368
Q ss_pred eEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc---ccChh--HHHHHHHHHHhhcCCcceeccccccCCCCCcCC
Q 048669 397 CFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT---KVNEQ--YLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSK 471 (568)
Q Consensus 397 ~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~---k~~~q--~~~NI~lKIN~KLGG~n~~l~~~~~~~~p~l~~ 471 (568)
+|||||+|+ ++.++|+.||++||++.||+||||+.+ |.++| |++||+||||+||||+||.|.+ .+|++.+
T Consensus 80 ~lvl~ilp~-~~~~~Y~~iK~~~~~~~GI~TQcv~~~~~~k~~~q~s~~~NI~lKiN~KlGG~n~~l~~----~~~~~~~ 154 (388)
T 2yha_A 80 QFVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT----PIPLLAK 154 (388)
T ss_dssp SEEEEEESS-SCHHHHHHHHHHHHTTTCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCCS----CCHHHHT
T ss_pred eEEEEEECC-CChhHHHHHHHHHhccCCCceEEEehhhhcCcCcHHHHHHHHHHHHHHHhCCcceeccc----cccccCC
Confidence 999999999 778899999999999999999999985 45778 9999999999999999999974 2455666
Q ss_pred CCEEEEEeeeccCC---CC--CCCCCeEEEEEeeCCCCccceeeEEEEecC-CccccccccCCCCCCCChHHHHHHHHHH
Q 048669 472 VPTIIFGMDVSHGS---PG--HSNVPSVAAVVSSRNWPILSRYRASVRSQS-TKLEMIDSLFKPLPNKDDAGIVRELLVD 545 (568)
Q Consensus 472 ~~tMivG~DV~Hp~---~~--~~~~pSiaavVaS~d~~~~t~y~~~~~~Q~-~~~Eii~~l~~p~~~~~~~~~~~~~L~~ 545 (568)
.+|||||+||+||+ || ....|||||||||+| +++++|++.+++|. +++|+|++|. +|++++|+.
T Consensus 155 ~~tmiiG~DV~H~~~~~~g~~~~~~pSiaavVaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l~---------~~~~~~L~~ 224 (388)
T 2yha_A 155 GKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQFT---------DKFKTRLEL 224 (388)
T ss_dssp SCEEEEEEEEECSCCCSSSSCCTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHHH---------HHHHHHHHH
T ss_pred CCEEEEEEEEecccccCCCCcCCCCCEEEEEEEEcC-CCCCEEEEEEEEcCCCcccHHHHHH---------HHHHHHHHH
Confidence 79999999999999 77 335799999999999 69999999999999 9999999876 699999999
Q ss_pred HHH---HhCCCCCCEEEEEecCCCC
Q 048669 546 FYK---SSGQTKPSQIIIFRSTLTW 567 (568)
Q Consensus 546 f~~---~n~~~lP~~IIiYRDGVS~ 567 (568)
|++ ++ +.+|+||||||||||+
T Consensus 225 ~~~~~~~~-~~~P~rIiiyRDGVse 248 (388)
T 2yha_A 225 WRSNPANN-RSLPENILIFRDGVSE 248 (388)
T ss_dssp HHHSGGGT-TCCCSEEEEEEESCCG
T ss_pred HHHhhhhc-CCCCceEEEEecCcCh
Confidence 998 54 7999999999999996
No 7
>2yhb_A QDE-2, post-transcriptional gene silencing protein QDE-2; RNA binding protein, argonaute, miRNA, siRNA; 3.65A {Neurospora crassa}
Probab=100.00 E-value=1.2e-45 Score=395.54 Aligned_cols=224 Identities=24% Similarity=0.389 Sum_probs=184.4
Q ss_pred ecc-CcccCceEEEEeCCc---ccHHHHHHHHHHHhhhcCCCCCCCCcccccCccccCCCChHHHHHHHHHHHHhccCCC
Q 048669 321 FVP-AAKIDHWAVANFSGG---CDIRSLCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRP 396 (568)
Q Consensus 321 f~~-~~~l~~W~vv~~~~~---~~~~~f~~~l~~~~~~~Gm~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (568)
|++ ++++++|+++++... ..+++|++.|.+.|+.+||++..|........ ..+.+..+ .++.+.+. .++
T Consensus 7 f~~p~~~l~~W~vv~~~~~~~~~~~~~f~~~l~~~~~~~G~~i~~p~~~~~~~~---~~~~~~~~--~~~~~~~~--~~~ 79 (437)
T 2yhb_A 7 VARPCRKIEKWTYLELKGSKANEGVPQAMTAFAEFLNRTGIPINPRFSPGMSMS---VPGSEKEF--FAKVKELM--SSH 79 (437)
T ss_dssp CSBCCCCBCSEEEEEEECSSCCCCHHHHHHHHHHHHHHTTCCBCSCCCCCEEEE---CCSSHHHH--HHHHHHHH--HTC
T ss_pred eccCCCcCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCEeCCCCCcceecC---CCchHHHH--HHHHhhcc--CCC
Confidence 666 688999999999542 37999999999999999999987753111000 11122222 22333221 368
Q ss_pred eEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc---ccChh--HHHHHHHHHHhhcCCcceeccccccCCCCCcCC
Q 048669 397 CFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT---KVNEQ--YLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSK 471 (568)
Q Consensus 397 ~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~---k~~~q--~~~NI~lKIN~KLGG~n~~l~~~~~~~~p~l~~ 471 (568)
+|||||+|+ ++.++|+.||++||++.||+||||+.+ |.++| |++||+||||+||||+||.|.. .+|++.+
T Consensus 80 ~lvl~ilp~-~~~~~Y~~iK~~~~~~~gI~TQcv~~~~~~k~~~q~s~~~Ni~lKiN~KlGG~n~~l~~----~~~~~~~ 154 (437)
T 2yhb_A 80 QFVVVLLPR-KDVAIYNMVKRAADITFGVHTVCCVAEKFLSTKGQLGYFANVGLKVNLKFGGTNHNIKT----PIPLLAK 154 (437)
T ss_dssp SEEEEEESS-CCHHHHHHHHHHHHTTSCCEEEEEEHHHHHCSTTHHHHHHHHHHHHHHHTTCBCCCCSS----CCHHHHT
T ss_pred cEEEEEECC-CChhHHHHHHHHHhcccCcccEEEehhHhcCcccHHHHHHHHHHHHHHHhCCcceeccc----cccccCC
Confidence 999999999 778899999999999999999999985 45778 9999999999999999999973 2455666
Q ss_pred CCEEEEEeeeccCC---CC--CCCCCeEEEEEeeCCCCccceeeEEEEecC-CccccccccCCCCCCCChHHHHHHHHHH
Q 048669 472 VPTIIFGMDVSHGS---PG--HSNVPSVAAVVSSRNWPILSRYRASVRSQS-TKLEMIDSLFKPLPNKDDAGIVRELLVD 545 (568)
Q Consensus 472 ~~tMivG~DV~Hp~---~~--~~~~pSiaavVaS~d~~~~t~y~~~~~~Q~-~~~Eii~~l~~p~~~~~~~~~~~~~L~~ 545 (568)
.+|||||+||+||+ || ....|||||||||+| +++++|.+.+++|. +++|+|++|. +|++++|+.
T Consensus 155 ~~tmiiG~DV~H~~~~~~g~~~~~~pSiaa~vaS~d-~~~~~y~~~~~~Q~~~~~E~i~~l~---------~~~~~~L~~ 224 (437)
T 2yhb_A 155 GKTMVVGYDVTHPTNLAAGQSPASAPSIVGLVSTID-QHLGQWPAMVWNNPHGQESMTEQFT---------DKFKTRLEL 224 (437)
T ss_dssp TCEEEEEEEECCCSCCCTTCCSTTSCEEEEEEECCS-TTCCCCCEEEEEETTTHHHHHHHHH---------HHHHHHHHH
T ss_pred CCEEEEEEEEeccccccCCCcCCCCCEEEEEEEecC-CCcCeeeeEEEEcCCcchhHHHHHH---------HHHHHHHHH
Confidence 89999999999999 76 335799999999999 69999999999999 9999999876 699999999
Q ss_pred HHH---HhCCCCCCEEEEEecCCCC
Q 048669 546 FYK---SSGQTKPSQIIIFRSTLTW 567 (568)
Q Consensus 546 f~~---~n~~~lP~~IIiYRDGVS~ 567 (568)
|++ .+ +.+|+||||||||||+
T Consensus 225 ~~~~~~~~-~~~P~rIiiyRDGVse 248 (437)
T 2yhb_A 225 WRSNPANN-RSLPENILIFRDGVSE 248 (437)
T ss_dssp HHTCGGGT-TCCCSEEEEEEESCCT
T ss_pred HHhhhhhc-CCCCceEEEEeCCcch
Confidence 998 54 7999999999999996
No 8
>4g0o_A Protein argonaute 5; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.19A {Arabidopsis thaliana}
Probab=99.94 E-value=4.6e-27 Score=213.88 Aligned_cols=129 Identities=32% Similarity=0.533 Sum_probs=109.8
Q ss_pred eccCcccCceEEEEeCCc---ccHHHHHHHHHHHhhhcCCCCCCCCcccccCccccCCCChHHHHHHHHHHHHhccCCCe
Q 048669 321 FVPAAKIDHWAVANFSGG---CDIRSLCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRPC 397 (568)
Q Consensus 321 f~~~~~l~~W~vv~~~~~---~~~~~f~~~l~~~~~~~Gm~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (568)
|+.++++++|++++|.++ .++++|++.|.+.|+.+||.+.+|..+... ....++++.+++.+.+.+ .+++
T Consensus 5 f~~~~~l~~W~vv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~------~~~~~~~e~~l~~~~~~~-~~~q 77 (139)
T 4g0o_A 5 MVNGAKVTSWTCVSFSTRIDRGLPQEFCKQLIGMCVSKGMEFKPQPAIPFI------SCPPEHIEEALLDIHKRA-PGLQ 77 (139)
T ss_dssp EEECCEECSEEEEECCSSSCTTHHHHHHHHHHHHHHHHTCEECSSCSSCCE------ECCGGGHHHHHHHHHHHC-TTCS
T ss_pred EccCcccCeEEEEEccCCCCHHHHHHHHHHHHHHHHHcCCccCCCCEEeee------cCCchhHHHHHHHHHHhc-CCCc
Confidence 678889999999999643 479999999999999999999876533210 012467888898888866 5699
Q ss_pred EEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc---ccChhHHHHHHHHHHhhcCCcceec
Q 048669 398 FLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT---KVNEQYLMNVLLKINAKLGGLNSLL 458 (568)
Q Consensus 398 lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~---k~~~q~~~NI~lKIN~KLGG~n~~l 458 (568)
|||||+|+ ++++ |+.||++||+++||+||||+.+ |.++||++||+||||+||||+||.|
T Consensus 78 lv~~ilp~-~~~~-Y~~iK~~~~~~~gi~tQcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 139 (139)
T 4g0o_A 78 LLIVILPD-VTGS-YGKIKRICETELGIVSQCCQPRQVNKLNKQYMENVALKINVKTGGRNTVL 139 (139)
T ss_dssp EEEEECCS-SSSC-HHHHHCCCCCCCCCCEEEECHHHHHHTCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred EEEEEECC-CCCc-HHHHHHHHhccCCcceEEechhhhcCCCHHHHHHHHHHHhhhhCcccCcC
Confidence 99999999 6777 9999999999999999999985 5689999999999999999999975
No 9
>4g0x_A Protein argonaute 1; MID domain, small RNA 5' nucleotide recognition, gene regula; 1.35A {Arabidopsis thaliana} PDB: 4g0q_A* 4g0p_A 4g0y_A* 4g0z_A* 3vna_A 3vnb_A
Probab=99.93 E-value=1.9e-26 Score=211.86 Aligned_cols=135 Identities=29% Similarity=0.530 Sum_probs=106.0
Q ss_pred eccCcccCceEEEEeCCcc---cHHHHHHHHHHHhhhcCCCCCCCCcccccCccccCCCChHHHHHHHHHHHHhc--cCC
Q 048669 321 FVPAAKIDHWAVANFSGGC---DIRSLCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKF--EKR 395 (568)
Q Consensus 321 f~~~~~l~~W~vv~~~~~~---~~~~f~~~l~~~~~~~Gm~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 395 (568)
|+.++++++|+++++.+.. .+++|++.|.+.|+.+||.+.+|..+.... ......+..++..++++.+.+ +.+
T Consensus 5 f~~~~~l~~Wavv~~~~~~~~~~~~~F~~~L~~~~~~~Gm~i~~p~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~ 82 (147)
T 4g0x_A 5 MINGGTVNNWICINFSRQVQDNLARTFCQELAQMCYVSGMAFNPEPVLPPVS--ARPEQVEKVLKTRYHDATSKLSQGKE 82 (147)
T ss_dssp EEECCEECSEEEEECCTTCCHHHHHHHHHHHHHHHHHTTCEECSSCSSCCEE--CCGGGHHHHHHHHHHHHHHTSSTTCC
T ss_pred EecCCccCeEEEEEccCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCeeeccC--CChHHHHHHHHHHHHHHHhhcccCCC
Confidence 6788899999999998653 588899999999999999998776532210 000011223444444444332 257
Q ss_pred CeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc---ccChhHHHHHHHHHHhhcCCcceec
Q 048669 396 PCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT---KVNEQYLMNVLLKINAKLGGLNSLL 458 (568)
Q Consensus 396 ~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~---k~~~q~~~NI~lKIN~KLGG~n~~l 458 (568)
++|||||+|+ +++++|+.||++||+++||+||||+.+ |.++||++||+||||+||||+||.|
T Consensus 83 ~~lv~~il~~-~~~~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N~~l 147 (147)
T 4g0x_A 83 IDLLIVILPD-NNGSLYGDLKRICETELGIVSQCCLTKHVFKMSKQYMANVALKINVKVGGRNTVL 147 (147)
T ss_dssp CCEEEEEECS-SCTTHHHHHHHHCCCCCCCCEEEEEHHHHHHCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred CeEEEEEeCC-CCccHHHHHHHHHccCCCcccEEechhhhcCCCHHHHHHHHHHHHHhhCcccccC
Confidence 8999999999 788999999999999999999999986 4689999999999999999999975
No 10
>4g0m_A Protein argonaute 2; MID domain, small RNA 5' nucleotide recognition, gene regula; 2.31A {Arabidopsis thaliana}
Probab=99.93 E-value=4e-26 Score=210.45 Aligned_cols=136 Identities=25% Similarity=0.412 Sum_probs=97.6
Q ss_pred eccCcccCceEEEEeCCc----ccHHHHHHHHHHHhhhcCCCCCCCCcccccCcc-ccC-CCChHHHHHHHHHHHHhcc-
Q 048669 321 FVPAAKIDHWAVANFSGG----CDIRSLCRDLIRFGEMKRISTSPPLNVFEENPQ-FRR-APAPVRVDRMFEQMKQKFE- 393 (568)
Q Consensus 321 f~~~~~l~~W~vv~~~~~----~~~~~f~~~l~~~~~~~Gm~~~~p~~v~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~- 393 (568)
|+.++++++|+++++.+. .++++|++.|.+.|+.+||.+.+|..+....+. ..+ ...+..++.+++++++..+
T Consensus 5 f~~~~~l~~Wavv~~~~~~~~~~~~~~f~~~l~~~~~~~Gm~i~~P~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 84 (150)
T 4g0m_A 5 VTRGSIVKHWAVLDFTASERFNKMPNDFVDNLIDRCWRLGMQMEAPIVYKTSRMETLSNGNAIEELLRSVIDEASRKHGG 84 (150)
T ss_dssp ----CEECSEEEEETTTTTSTTCCCTTHHHHHHHHHHHTTCEECCCSEEEECCGGGGGCHHHHHHHHHHHHHHHHHHTTT
T ss_pred ECCCcccCeEEEEEecCCcchhHHHHHHHHHHHHHHHHcCCccCCCceeeccccccccCchHHHHHHHHHHHHHHHhcCC
Confidence 678889999999999764 378999999999999999999887754221000 000 0012245556666666544
Q ss_pred CCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc---ccChhHHHHHHHHHHhhcCCcceec
Q 048669 394 KRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT---KVNEQYLMNVLLKINAKLGGLNSLL 458 (568)
Q Consensus 394 ~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~---k~~~q~~~NI~lKIN~KLGG~n~~l 458 (568)
..|+|||||||+ ++ +.|+.||++||+++||+||||+.+ |.++||++||+||||+||||+||.|
T Consensus 85 ~~pqlv~~ilp~-~~-~~Y~~iK~~~~~~~gi~tqcv~~~~~~k~~~q~~~nv~lkiN~KlGG~n~~l 150 (150)
T 4g0m_A 85 ARPTLVLCAMSR-KD-DGYKTLKWIAETKLGLVTQCFLTGPATKGGDQYRANLALKMNAKVGGSNVEL 150 (150)
T ss_dssp CCCCEEEEEESS-CC-THHHHHHHCCCCCSCCEEEEEEHHHHSSSCHHHHHHHHHHHHHHC-------
T ss_pred CCCcEEEEEECC-CC-ccHHHHHHHHhhccCcceEEeehhhccCCCHHHHHHHHHHHhhccCCccCcC
Confidence 367999999999 66 459999999999999999999985 5789999999999999999999975
No 11
>3luc_A Protein argonaute-2; MID domain, ribonucleoprotein, RNA-binding, RNA-mediated GEN silencing, translation regulation, RNA binding protein; 1.69A {Homo sapiens} PDB: 3lud_A* 3lug_A 3luh_A 3luj_A* 3luk_A 3qx8_A* 3qx9_A*
Probab=99.93 E-value=1.1e-25 Score=204.52 Aligned_cols=126 Identities=26% Similarity=0.448 Sum_probs=105.9
Q ss_pred eccCcccCceEEEEeCCc-----ccHHHHHHHHHHHhhhcCCCCCCCCcccccCccccCCCChHHHHHHHHHHHHhccCC
Q 048669 321 FVPAAKIDHWAVANFSGG-----CDIRSLCRDLIRFGEMKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKR 395 (568)
Q Consensus 321 f~~~~~l~~W~vv~~~~~-----~~~~~f~~~l~~~~~~~Gm~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (568)
|+.|+++++|++++|.+. ..+++|++.|.+.|+.+||.+.+|..+... .+..++++.+|+++++.. .+
T Consensus 5 f~~~~~l~~Wavv~~~~~r~~~~~~~~~F~~~L~~~~~~~Gm~i~~~p~~~~~------~~~~~~v~~~~~~l~~~~-~~ 77 (138)
T 3luc_A 5 FHTGIEIKVWAIACFAPQRQCTEVHLKSFTEQLRKISRDAGMPIQGQPCFCKY------AQGADSVEPMFRHLKNTY-AG 77 (138)
T ss_dssp CCCCCCBCSEEEEECSCTTTSCHHHHHHHHHHHHHHHHHHTCCBCSSCSEEEE------CCSGGGHHHHHHHHHHHC-TT
T ss_pred ecCCcccceEEEEEecCcccccHHHHHHHHHHHHHHHHhcCCCCCCCCeeeec------CCcHHHHHHHHHHHHhcC-CC
Confidence 678899999999999742 268999999999999999999864432211 123568999999998864 46
Q ss_pred CeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc---ccChhHHHHHHHHHHhhcCCcc
Q 048669 396 PCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT---KVNEQYLMNVLLKINAKLGGLN 455 (568)
Q Consensus 396 ~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~---k~~~q~~~NI~lKIN~KLGG~n 455 (568)
++|||||||+ ++++|+.||++||+++||+||||+.+ |.++||++||+||||+||||+|
T Consensus 78 ~qlv~~ilp~--~~~~Y~~iK~~~~~~~gv~tqcv~~~~~~k~~~q~~~nv~lKiN~KlGG~N 138 (138)
T 3luc_A 78 LQLVVVILPG--KTPVYAEVKRVGDTVLGMATQCVQMKNVQRTTPQTLSNLCLKINVKLGGVN 138 (138)
T ss_dssp CCEEEEEECS--SCHHHHHHHHHHHTTSCCCEEEEEHHHHHSCCHHHHHHHHHHHHHHHSCC-
T ss_pred CcEEEEEECC--CChHHHHHHHHhccCCCcceEEeCchhccCCCHHHHHHHHHHHhhccCCcC
Confidence 8999999997 47899999999999999999999975 5689999999999999999997
No 12
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=99.89 E-value=1.4e-24 Score=232.33 Aligned_cols=190 Identities=14% Similarity=0.060 Sum_probs=130.7
Q ss_pred CceEEEEeCCcccHHHHHHHHHHHhh---hcCCCCCCCCcccccCccccCCCChHHHHHHHHHHHHhccCCCeEEEEEc-
Q 048669 328 DHWAVANFSGGCDIRSLCRDLIRFGE---MKRISTSPPLNVFEENPQFRRAPAPVRVDRMFEQMKQKFEKRPCFLLCLL- 403 (568)
Q Consensus 328 ~~W~vv~~~~~~~~~~f~~~l~~~~~---~~Gm~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvlvil- 403 (568)
.+|++++..+... |++.|.+... ..++.+..+... . ..+ .+.++ +.+++ +++++|||+
T Consensus 47 ~~w~vI~~~~~~~---~l~~l~~~~~~~~g~~f~~~~~~~~-~--~~y-----~~~i~---~~l~~----~~~lvlvilp 108 (427)
T 2w42_A 47 NQIALIHNNQFSS---LINQLKSQISSKIDEVWHIHNINIS-E--FIY-----DSPHF---DSIKS----QVDNAIDTGV 108 (427)
T ss_dssp SEEEEEESCTTCH---HHHHHHHHHHHHHHHTTCCCSCEEE-E--EEC-----SSSSH---HHHHH----HHHHHHHHCC
T ss_pred CEEEEEECcccHH---HHHHHHHhhhhcCCCceeecCCcCC-h--HHH-----HHHHH---HHhcC----CCCEEEEEEE
Confidence 6899999876543 6666655432 245555433210 0 001 11222 22332 478999999
Q ss_pred -------CCCCCchhhhhhhhhcccccCceeeEeeccc---cChh-HHHHHHHHHHhhcCCcceeccccccCCCCCcCCC
Q 048669 404 -------PDRKDSDLYGSWKRKTLSEFGIFNQCLAPTK---VNEQ-YLMNVLLKINAKLGGLNSLLAIEQSKNLPLVSKV 472 (568)
Q Consensus 404 -------p~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~k---~~~q-~~~NI~lKIN~KLGG~n~~l~~~~~~~~p~l~~~ 472 (568)
|+ ++++.|. +|+ ++.+.||+||||..++ .+.+ +++||++||||||||+||.|+.. .|. .
T Consensus 109 ~~~~~~~~~-~~~~~y~-~K~-~~~~~gvptQ~I~~~tl~~~~~~~~~~nIalqi~~KlGG~pW~l~~~----~~~---~ 178 (427)
T 2w42_A 109 DGIMLVLPE-YNTPLYY-KLK-SYLINSIPSQFMRYDILSNRNLTFYVDNLLVQFVSKLGGKPWILNVD----PEK---G 178 (427)
T ss_dssp SEEEEEESS-CCHHHHH-HHH-HHHHTTSCEEEEEGGGCCTTTHHHHHHHHHHHHHHHTTCBCCEECCC----TTS---S
T ss_pred ccccccCCC-CCcchHH-HHH-HHhCCCcCcEEEEhhhcccccchhHHHHHHHHHHHHhCCcceecccC----CCC---C
Confidence 66 5555565 787 5689999999999875 3434 48899999999999999999731 132 5
Q ss_pred CEEEEEeeeccCCCCCCCCCeEEEEEeeCCCCccceeeEEEEecCCccccccccCCCCCCCChHHHHHHHHHHHHH-HhC
Q 048669 473 PTIIFGMDVSHGSPGHSNVPSVAAVVSSRNWPILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYK-SSG 551 (568)
Q Consensus 473 ~tMivG~DV~Hp~~~~~~~pSiaavVaS~d~~~~t~y~~~~~~Q~~~~Eii~~l~~p~~~~~~~~~~~~~L~~f~~-~n~ 551 (568)
+|||||+||+|++++ +++|++.+.| .+..-+...++.|.+++|++++|. .+++++|.+|++ .|
T Consensus 179 ~~miiGidv~h~~~~-----~v~g~a~v~~-~~g~~~~~~~~~~~~~~E~~~~l~---------~~l~~aL~~y~~~~~- 242 (427)
T 2w42_A 179 SDIIIGTGATRIDNV-----NLFCFAMVFK-KDGTMLWNEISPIVTSSEYLTYLK---------STIKKVVYGFKKSNP- 242 (427)
T ss_dssp CSEEEEEEEEESSSS-----EEEEEEEEEC-TTSCEEEEEECCCEEGGGHHHHHH---------HHHHHHHHHHHHHCT-
T ss_pred CeEEEEEEEEEcCCC-----cEEEEEEEEc-CCCCEEEEEEEecCChhHHHHHHH---------HHHHHHHHHHHHHhc-
Confidence 699999999999864 6777644444 233334455566667899999876 599999999998 76
Q ss_pred CCCCC--EEEEE
Q 048669 552 QTKPS--QIIIF 561 (568)
Q Consensus 552 ~~lP~--~IIiY 561 (568)
+.+|+ |||||
T Consensus 243 ~~~P~~~rIii~ 254 (427)
T 2w42_A 243 DWDVEKLTLHVS 254 (427)
T ss_dssp TCCCSEEEEEEE
T ss_pred CCCCCceEEEEE
Confidence 68898 66988
No 13
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=99.72 E-value=2.2e-18 Score=157.21 Aligned_cols=69 Identities=26% Similarity=0.437 Sum_probs=43.9
Q ss_pred CceEEehHHHHHhhcCCcccCCCCCceEEeCCCCCCeeEeccceeecCCccccccCCHHHHHHHHHHhcCC
Q 048669 195 KCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTKALTVFQRSALVEKSQQK 265 (568)
Q Consensus 195 ~g~~iSv~dYf~~~Y~i~L~~~p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~kL~~~q~~~mi~~t~~~ 265 (568)
+|++|||+|||+++ |++|+| |+||||++|++.+++|||||||.|++||+++++|++.|+++||++||++
T Consensus 75 ~g~~isv~~Yf~~~-~~~l~~-p~lP~l~~g~~~k~~ylP~ElC~i~~gQ~~~~kl~~~q~~~mik~a~~~ 143 (143)
T 1vyn_A 75 DGKKVTIASYFHSR-NYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDGATQVANMIKYAATS 143 (143)
T ss_dssp SSCEEEHHHHHHHT-TCCCSS-TTSEEEEEECSSSEEEEEGGGEEECC-----------------------
T ss_pred CCCEEEHHHHHHHc-CCCCCC-CCCCeEEecCCCCCeEeccEeEEccCCccccccCCHHHHHHHHHHHhcC
Confidence 57899999999988 999999 9999999999889999999999999999999999999999999999863
No 14
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}
Probab=99.64 E-value=8e-17 Score=147.97 Aligned_cols=73 Identities=19% Similarity=0.315 Sum_probs=45.4
Q ss_pred CceEEehHHHHHhhcCCcccCCCCCceEEeCCCC---------CCeeEeccceeecCCccccccCCHHHHH------HHH
Q 048669 195 KCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPR---------KPTYIPIELCSLLSLQRYTKALTVFQRS------ALV 259 (568)
Q Consensus 195 ~g~~iSv~dYf~~~Y~i~L~~~p~lPll~~g~~~---------~~~ylP~Elc~i~~gQ~~~~kL~~~q~~------~mi 259 (568)
+|.++||+|||+++||++|+| |+||||+++.+. +++|||||||.|+| |+++|++ +|+
T Consensus 62 ~g~~~T~~eYf~~~Y~i~i~~-~~qPlL~~~~~~~~~~~~~~~~~~~LppELC~i~~-------L~d~~rs~~~~mk~l~ 133 (150)
T 2xfm_A 62 DGSEVSFLEYYRKQYNQEITD-LKQPVLVSQPKRRRGPGGTLPGPAMLIPELCYLTG-------LTDKMRNDFNVMKDLA 133 (150)
T ss_dssp SSCCCCHHHHHHTTCCCCCCC-SSSCEEEECSSCTTCCSSCSSCCEEECGGGEEECS-------TTC-------------
T ss_pred CCceeeHHHHHHHHcCCccCC-CCCCeEEecccccccccccccceEEecHHHhccCC-------CCHHHHhhHHHHHHHH
Confidence 467899999999999999999 999999997642 67999999999997 9999988 499
Q ss_pred HHhcCChHHHHHHhhc
Q 048669 260 EKSQQKPQEKMKIITD 275 (568)
Q Consensus 260 ~~t~~~P~~R~~~I~~ 275 (568)
++|+.+|.+|.+.|.+
T Consensus 134 ~~t~~~P~~R~~~i~~ 149 (150)
T 2xfm_A 134 VHTRLTPEQRQREVGR 149 (150)
T ss_dssp ----------------
T ss_pred HHHccCHHHHHHHHhc
Confidence 9999999999998875
No 15
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=99.62 E-value=2.4e-16 Score=143.92 Aligned_cols=72 Identities=13% Similarity=0.200 Sum_probs=41.9
Q ss_pred CceEEehHHHHHhhcCCcccCCCCCceEEeCCCC----------CCeeEeccceeecCCccccccCCHHHHH------HH
Q 048669 195 KCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPR----------KPTYIPIELCSLLSLQRYTKALTVFQRS------AL 258 (568)
Q Consensus 195 ~g~~iSv~dYf~~~Y~i~L~~~p~lPll~~g~~~----------~~~ylP~Elc~i~~gQ~~~~kL~~~q~~------~m 258 (568)
+|.++||+|||+++||++|+| |+||||+++.+. +++|||||||.++| |+++|++ +|
T Consensus 61 dg~~iT~~eYf~~kY~i~I~~-~~qPlL~~~~k~~~~~~~~~~~~~~yL~pELC~ltg-------Ltd~~r~d~~~mk~l 132 (148)
T 3qir_A 61 DGKEITFLEYYSKNYGITVKE-EDQPLLIHRPSERQDNHGMLLKGEILLLPELSFMTG-------IPEKMKKDFRAMKDL 132 (148)
T ss_dssp TSCEEEHHHHHHHHHCCCCSC-TTCCEEEECCTTCCCC---CCSCCEEECGGGEECC-----------------------
T ss_pred CCCcccHHHHHHHHcCCeecC-CCCceEEeecccccCCCCCCccceeeecHHHhhhcC-------CCHHHHhhhHHHHHH
Confidence 467899999999999999999 999999997642 57999999999998 9999987 79
Q ss_pred HHHhcCChHHHHHHhh
Q 048669 259 VEKSQQKPQEKMKIIT 274 (568)
Q Consensus 259 i~~t~~~P~~R~~~I~ 274 (568)
+.+|+..|.+|.+.|+
T Consensus 133 ~~~tr~~P~~R~~~l~ 148 (148)
T 3qir_A 133 AQQINLSPKQHHSALE 148 (148)
T ss_dssp ----------------
T ss_pred HHHHCCCHHHHHHhhC
Confidence 9999999999998763
No 16
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=99.43 E-value=6.2e-14 Score=124.28 Aligned_cols=52 Identities=33% Similarity=0.579 Sum_probs=43.9
Q ss_pred CceEEehHHHHHhhcCCcccCCCCCceEEeCCCCCCeeEeccceeecCCccccc
Q 048669 195 KCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTK 248 (568)
Q Consensus 195 ~g~~iSv~dYf~~~Y~i~L~~~p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~ 248 (568)
+|.+|||+|||+++ |++|+| |+||||++|+..+++|||||||.|++||++++
T Consensus 73 ~g~~isV~~Yf~~~-~~~l~~-p~lP~l~~g~~~~~~ylP~Elc~i~~gQ~~~~ 124 (124)
T 3mj0_A 73 DGKKVTIASYFHSR-NYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNR 124 (124)
T ss_dssp SSSEEEHHHHHHTT-TCCCSC-SSSEEEECCBTTBCCEECGGGEEEEC------
T ss_pred CCcEEEHHHHHHHc-CCcccC-CCCCeEeecCCCCceEecceeEEECCCCccCC
Confidence 57899999999997 999999 99999999998899999999999999999863
No 17
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=99.41 E-value=1.6e-13 Score=121.38 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=44.4
Q ss_pred CceEEehHHHHHhhcCCcccCCCCCceEEeCCCC---------CCeeEeccceeecCCccccccCCHHHHHH
Q 048669 195 KCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPR---------KPTYIPIELCSLLSLQRYTKALTVFQRSA 257 (568)
Q Consensus 195 ~g~~iSv~dYf~~~Y~i~L~~~p~lPll~~g~~~---------~~~ylP~Elc~i~~gQ~~~~kL~~~q~~~ 257 (568)
+|..+||+|||+++||++|++ |+||||+++.+. +++|||||||.++| |+|+++++
T Consensus 61 dg~~~T~~eYyk~kY~i~I~~-~~QPLL~~~~k~~~~~~~~~~~~iyLipELC~ltG-------ltd~~r~d 124 (124)
T 3o7v_X 61 DGSEVSFLEYYRKQYNQEITD-LKQPMLVSQPKRRRGPGGTLPGPAMLIPELCYLTG-------LTDKMRND 124 (124)
T ss_dssp TSCEEEHHHHHHHHHCCCCCC-SSCCEEEECCC----------CCEEECGGGEECCC-------CC------
T ss_pred CCCeeeHHHHHHHHhCceecC-CCcceEEEeeecccCCCCCCcceEEechhheeccC-------CChHhccC
Confidence 467899999999999999999 999999997532 57999999999999 99998863
No 18
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=99.30 E-value=1.2e-12 Score=143.16 Aligned_cols=55 Identities=33% Similarity=0.533 Sum_probs=44.1
Q ss_pred CceEEehHHHHHhhcCCcccCCCCCceEEeCCCCCCeeEeccceeecCCccccccCC
Q 048669 195 KCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKPRKPTYIPIELCSLLSLQRYTKALT 251 (568)
Q Consensus 195 ~g~~iSv~dYf~~~Y~i~L~~~p~lPll~~g~~~~~~ylP~Elc~i~~gQ~~~~kL~ 251 (568)
++++|||+|||+ +||++|+| |+||||++|++++++|||||||.|++||||++|||
T Consensus 455 ~~~~~sv~~yf~-~~~~~l~~-p~lp~v~~~~~~~~~~~P~e~~~i~~~q~~~~~~~ 509 (509)
T 1r6z_P 455 DGKKVTIASYFH-SRNYPLKF-PQLHCLNVGSSIKSILLPIELCSIEEGQALNRKDG 509 (509)
T ss_dssp TTEEEEHHHHHH-HTTCCCSC-TTSEEEECSCTTSCCEECGGGEEEEC---------
T ss_pred CCeEEEHHHHHH-HcCCcccC-CCCCeEecCCCCCCceecceeeEecCCccccccCC
Confidence 568999999999 89999999 99999999998899999999999999999999986
No 19
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=97.59 E-value=4.2e-05 Score=86.74 Aligned_cols=62 Identities=24% Similarity=0.442 Sum_probs=46.3
Q ss_pred ceeEEEeeee---cCCCC--CceEEehHHHHHhhcCCcccCCCCCceEEeCCC------------------CCCeeEecc
Q 048669 180 GLSLNIGVKD---RNDDV--KCVDVTVFDYFVNHRRINLCFSGDFPCIDVGKP------------------RKPTYIPIE 236 (568)
Q Consensus 180 ~l~LniDvs~---~~~~~--~g~~iSv~dYf~~~Y~i~L~~~p~lPll~~g~~------------------~~~~ylP~E 236 (568)
+.+...|+.. +.++| .+..+|+.|||+++||++|++ ++||+|.+... .+.++||||
T Consensus 169 r~Y~i~~id~d~~P~S~F~~~~~~~Ty~dYYk~ky~i~I~d-~~QPLL~~~~~~~~~~~r~~~~~~~~~~~~~~v~L~PE 247 (756)
T 2qvw_A 169 SLYVVLGIDSTQTSLSYFTRANESITYMRYYATAHNIHLRA-ADLPLVAAVRLDDLKDHQIPAPGSWDDLAPKLRFLPPE 247 (756)
T ss_dssp EEEEEEEEEEEEETTSEEEETTEEEEHHHHHHHTTCCCCSC-TTSEEEEEEETTTTTTCCCCSTTC-CCSCSSCEEECTT
T ss_pred eEEEEEEecCCCCCCCcCCCCCCCCCHHHHHHHHcCccccc-CCCCeEEEEecccccccccccccccccCCccceeeCHH
Confidence 4444455544 22333 246899999999999999999 99999987421 235899999
Q ss_pred ceeecC
Q 048669 237 LCSLLS 242 (568)
Q Consensus 237 lc~i~~ 242 (568)
||.++|
T Consensus 248 LC~vt~ 253 (756)
T 2qvw_A 248 LCLLLP 253 (756)
T ss_dssp TCEECC
T ss_pred Hheeec
Confidence 999998
No 20
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=53.44 E-value=24 Score=35.21 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=46.7
Q ss_pred HHHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 384 MFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 384 ~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
-++.++++....|.|.++++-+...+..|-..|...+.+.||.+..+... ....+-+-+...++|.-
T Consensus 42 ~v~~l~~~~g~~P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~~~se~ell~~I~~LN~D 109 (303)
T 4b4u_A 42 RVEALKAKTGRTPILATILVGDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQLLAEIEKLNAN 109 (303)
T ss_dssp HHHHHHHHHSCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEecCccCCHHHHHHHHHHhcCC
Confidence 33445544445688988888663346789999998899999999988764 33444556666677753
No 21
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=39.89 E-value=54 Score=32.57 Aligned_cols=77 Identities=18% Similarity=0.266 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcc-CCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh--cCCccee
Q 048669 382 DRMFEQMKQKFE-KRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK--LGGLNSL 457 (568)
Q Consensus 382 ~~~~~~~~~~~~-~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K--LGG~n~~ 457 (568)
...+..++++.. ..|.|.++.+-+...+..|-..|...+.++||.+..+... .....-+-+...++|.- .-|+.-.
T Consensus 23 ~~~v~~l~~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVq 102 (300)
T 4a26_A 23 KDKVAALRELYGGRVPGLASIIVGQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQ 102 (300)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEEC
T ss_pred HHHHHHHHHhCCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEc
Confidence 333444554433 4688988888663346889999999899999999888753 34445567777888853 5666544
Q ss_pred c
Q 048669 458 L 458 (568)
Q Consensus 458 l 458 (568)
+
T Consensus 103 l 103 (300)
T 4a26_A 103 L 103 (300)
T ss_dssp S
T ss_pred C
Confidence 3
No 22
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=39.03 E-value=56 Score=32.49 Aligned_cols=70 Identities=23% Similarity=0.325 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhc-cCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 381 VDRMFEQMKQKF-EKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 381 ~~~~~~~~~~~~-~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
+...+..+++.. ...|.|+++.+-+...+..|-..|...+.+.||.+..+... .....-+.+...++|.-
T Consensus 20 ~~~~v~~l~~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D 91 (301)
T 1a4i_A 20 LKNQVTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNED 91 (301)
T ss_dssp HHHHHHHHHHHSTTCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCCCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 334444555442 13488998888763456789999998888999999998763 34445566777888864
No 23
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=36.79 E-value=63 Score=31.87 Aligned_cols=74 Identities=20% Similarity=0.328 Sum_probs=50.3
Q ss_pred HHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHh--hcCCcceec
Q 048669 385 FEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINA--KLGGLNSLL 458 (568)
Q Consensus 385 ~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~--KLGG~n~~l 458 (568)
++.+++.....|.|.++.+-+...+..|-..|...+.++||.+..+... .....-+.+...++|. ..-|+.-.+
T Consensus 25 v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVql 101 (286)
T 4a5o_A 25 VTERRQQGLRVPGLAVILVGTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQL 101 (286)
T ss_dssp HHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECS
T ss_pred HHHHHhcCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcC
Confidence 3344443223588988888663346789999998888999999888763 3445556777788886 355665443
No 24
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=35.96 E-value=61 Score=31.96 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=51.9
Q ss_pred HHHHHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh--cCCcceec
Q 048669 382 DRMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK--LGGLNSLL 458 (568)
Q Consensus 382 ~~~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K--LGG~n~~l 458 (568)
...++.++++....|.|.++.+-+...+..|-..|...+.++||.+..+... .....-+-....++|.- .-|++-.+
T Consensus 21 ~~~v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvql 100 (285)
T 3l07_A 21 ATQVQEYKHHTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQL 100 (285)
T ss_dssp HHHHHHHHHHHCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECS
T ss_pred HHHHHHHHhcCCCCceEEEEEECCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEcC
Confidence 3334444443223688988888663346789999998888999999888763 34445566777888864 56665443
No 25
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=33.76 E-value=73 Score=31.33 Aligned_cols=68 Identities=16% Similarity=0.175 Sum_probs=46.8
Q ss_pred HHHHHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 382 DRMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 382 ~~~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
...++.+++. ...|.|.++.+-+...+..|-..|...+.+.||.+..+... .....-+.+...++|.-
T Consensus 20 ~~~v~~l~~~-g~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~i~~lN~D 88 (281)
T 2c2x_A 20 KQRVAALDAA-GRTPGLGTILVGDDPGSQAYVRGKHADCAKVGITSIRRDLPADISTATLNETIDELNAN 88 (281)
T ss_dssp HHHHHHHHHT-TCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhc-CCCceEEEEEeCCChhhHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3334444443 23488988888653446789999988888999999988763 34455566777888854
No 26
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=32.72 E-value=59 Score=32.09 Aligned_cols=70 Identities=20% Similarity=0.270 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhccCCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHhh
Q 048669 381 VDRMFEQMKQKFEKRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINAK 450 (568)
Q Consensus 381 ~~~~~~~~~~~~~~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~K 450 (568)
+...++.+++.....|.|.++.+-+...+..|-..|...+.+.||.+..+... .....-+.+...++|.-
T Consensus 19 ~~~~v~~l~~~~~~~P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D 89 (288)
T 1b0a_A 19 VAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNAD 89 (288)
T ss_dssp HHHHHHHHHHTTCCCCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 33334445443213488988888663446789999998888999999888753 33445566677888764
No 27
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=30.57 E-value=77 Score=31.21 Aligned_cols=64 Identities=22% Similarity=0.332 Sum_probs=46.8
Q ss_pred CCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeecc-ccChhHHHHHHHHHHh--hcCCcceec
Q 048669 395 RPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPT-KVNEQYLMNVLLKINA--KLGGLNSLL 458 (568)
Q Consensus 395 ~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~-k~~~q~~~NI~lKIN~--KLGG~n~~l 458 (568)
.|.|.++.+-+...+..|-..|...+.++||.+..+... .....-+.+...++|. +.-|++-.+
T Consensus 33 ~P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvql 99 (285)
T 3p2o_A 33 ESCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQL 99 (285)
T ss_dssp CCEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEecC
Confidence 688888888663346789999998888999999888764 3444556777788886 466776444
No 28
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=29.74 E-value=1e+02 Score=27.53 Aligned_cols=68 Identities=24% Similarity=0.354 Sum_probs=40.5
Q ss_pred CEEEEEeeeccCCCCCCCCCeEEEEEeeCCC-CccceeeEEEEecCCccccccccCCCCCCCChHHHHHHHHHHHHHHhC
Q 048669 473 PTIIFGMDVSHGSPGHSNVPSVAAVVSSRNW-PILSRYRASVRSQSTKLEMIDSLFKPLPNKDDAGIVRELLVDFYKSSG 551 (568)
Q Consensus 473 ~tMivG~DV~Hp~~~~~~~pSiaavVaS~d~-~~~t~y~~~~~~Q~~~~Eii~~l~~p~~~~~~~~~~~~~L~~f~~~n~ 551 (568)
|.-|=++|+||-.. .-+||++|.=.|. +.-+.|.- +.+.. +-.+|. .+|+|.|..-+..
T Consensus 17 P~RIE~fDiSh~~G----~~~VasmVVf~~g~p~K~~YRr-f~I~~---~g~DDy----------a~M~Evl~RR~~r-- 76 (159)
T 2nrr_A 17 PYRIEGIDISHLQG----KYTVASLVVFEDGFPKKGDYRR-YKIEQ---DHPDDY----------ESIRTVVKRRYSK-- 76 (159)
T ss_dssp CCEEEEEEEECC-------CCEEEEEEEETTEECGGGCEE-EEC--------CHH----------HHHHHHHHHHHTT--
T ss_pred CCEEEEEECCccCC----ccceEEEEEEeCCccChhhCce-eecCC---CCCCHH----------HHHHHHHHHHhcc--
Confidence 56789999999753 3578888876664 11133332 33332 223454 3889988776643
Q ss_pred CCCCCEEEE
Q 048669 552 QTKPSQIII 560 (568)
Q Consensus 552 ~~lP~~IIi 560 (568)
..+|+-|+|
T Consensus 77 ~~~PDLilI 85 (159)
T 2nrr_A 77 HPLPNLLFV 85 (159)
T ss_dssp SCCCSEEEE
T ss_pred CCCCCEEEE
Confidence 379998886
No 29
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=29.67 E-value=88 Score=31.31 Aligned_cols=68 Identities=16% Similarity=0.337 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcc-CCCeEEEEEcCCCCCchhhhhhhhhcccccCceeeEeeccccChhHHHHHHHHHHhh
Q 048669 381 VDRMFEQMKQKFE-KRPCFLLCLLPDRKDSDLYGSWKRKTLSEFGIFNQCLAPTKVNEQYLMNVLLKINAK 450 (568)
Q Consensus 381 ~~~~~~~~~~~~~-~~~~lvlvilp~~~~~~~Y~~IK~~~d~~~GV~TQcv~~~k~~~q~~~NI~lKIN~K 450 (568)
+...+..+++... ..|.|+++.+-+...+..|-..|...+.+.||.+..+..... .-+.+...++|.-
T Consensus 21 ~~~~v~~l~~~~~~~~P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~~~~~l~~~--~~l~~~i~~lN~d 89 (320)
T 1edz_A 21 IINNVEEYKKTHNGQGPLLVGFLANNDPAAKMYATWTQKTSESMGFRYDLRVIEDK--DFLEEAIIQANGD 89 (320)
T ss_dssp HHHHHHHHHHHTTTCCCEEEEEECCCCHHHHHHHHHHHHHHHHHTCEEEEEECSSG--GGHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCCCeEEEEEECCchhHHHHHHHHHHHHHHcCCEEEEEECCCh--HHHHHHHHHHcCC
Confidence 3344444544421 248898888866344678999999888899999988876432 4356677788753
No 30
>3nqi_A Putative lipoprotein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.87A {Bacteroides fragilis}
Probab=21.82 E-value=53 Score=31.51 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCCCCCEEEEE
Q 048669 539 VRELLVDFYKSSGQTKPSQIIIF 561 (568)
Q Consensus 539 ~~~~L~~f~~~n~~~lP~~IIiY 561 (568)
+..+|.+|...+++.+|.+|+|.
T Consensus 196 Is~~l~aFk~k~G~~~PtkI~V~ 218 (246)
T 3nqi_A 196 ISQILREYTLKSGQTKPAKITIV 218 (246)
T ss_dssp CHHHHHHHHHHHCCSSCSEEEEE
T ss_pred HHHHHHHHHHhcCCcCCcEEEEE
Confidence 35789999999855589999985
Done!