Query 048672
Match_columns 92
No_of_seqs 133 out of 1277
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 11:53:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0406 Glutathione S-transfer 99.9 1.4E-24 3E-29 139.6 9.2 85 6-91 8-103 (231)
2 PRK09481 sspA stringent starva 99.9 2E-23 4.3E-28 133.3 9.9 84 6-91 9-102 (211)
3 KOG0868 Glutathione S-transfer 99.9 3.6E-22 7.8E-27 123.6 6.4 83 6-90 4-100 (217)
4 PRK15113 glutathione S-transfe 99.9 2.6E-21 5.7E-26 123.7 10.3 85 6-91 4-105 (214)
5 PLN02473 glutathione S-transfe 99.8 1.4E-20 2.9E-25 120.0 9.0 84 7-91 2-99 (214)
6 PLN02395 glutathione S-transfe 99.8 4E-20 8.7E-25 117.8 9.2 83 8-91 3-98 (215)
7 COG0625 Gst Glutathione S-tran 99.8 4.9E-20 1.1E-24 117.4 8.2 82 8-91 1-98 (211)
8 PRK10357 putative glutathione 99.8 9.2E-20 2E-24 115.3 8.1 82 8-91 1-93 (202)
9 PRK13972 GSH-dependent disulfi 99.8 1.7E-19 3.7E-24 115.2 9.0 80 8-91 2-100 (215)
10 PRK10542 glutathionine S-trans 99.8 7.4E-20 1.6E-24 115.5 7.3 82 8-91 1-97 (201)
11 TIGR01262 maiA maleylacetoacet 99.8 7.3E-19 1.6E-23 111.6 7.9 81 9-91 1-95 (210)
12 cd03059 GST_N_SspA GST_N famil 99.8 3.6E-18 7.7E-23 92.4 7.4 63 8-71 1-73 (73)
13 KOG0867 Glutathione S-transfer 99.8 3.6E-18 7.7E-23 110.5 8.5 84 7-91 2-99 (226)
14 PF13417 GST_N_3: Glutathione 99.8 3.2E-18 7E-23 93.5 7.0 64 10-74 1-74 (75)
15 PRK11752 putative S-transferas 99.8 6E-18 1.3E-22 111.5 9.4 82 6-91 43-146 (264)
16 cd03052 GST_N_GDAP1 GST_N fami 99.8 4.7E-18 1E-22 92.6 6.7 60 8-68 1-73 (73)
17 PLN02378 glutathione S-transfe 99.7 7E-18 1.5E-22 108.0 7.9 82 4-89 11-99 (213)
18 cd03058 GST_N_Tau GST_N family 99.7 1.1E-17 2.3E-22 91.0 7.2 64 8-71 1-74 (74)
19 PLN02817 glutathione dehydroge 99.7 1.6E-17 3.6E-22 109.6 8.0 80 7-90 67-153 (265)
20 cd03046 GST_N_GTT1_like GST_N 99.7 2.9E-17 6.3E-22 89.4 7.5 64 8-72 1-76 (76)
21 cd03050 GST_N_Theta GST_N fami 99.7 2.5E-17 5.5E-22 89.9 7.3 63 8-71 1-76 (76)
22 cd03057 GST_N_Beta GST_N famil 99.7 2.8E-17 6E-22 89.9 7.1 64 8-72 1-77 (77)
23 cd03048 GST_N_Ure2p_like GST_N 99.7 4.1E-17 8.9E-22 90.1 7.7 64 8-72 2-80 (81)
24 cd03045 GST_N_Delta_Epsilon GS 99.7 3.3E-17 7.2E-22 88.8 7.0 61 8-69 1-74 (74)
25 cd03053 GST_N_Phi GST_N family 99.7 7.9E-17 1.7E-21 87.8 7.4 62 8-70 2-76 (76)
26 cd03061 GST_N_CLIC GST_N famil 99.7 5.7E-17 1.2E-21 91.6 6.8 57 17-74 33-89 (91)
27 cd03076 GST_N_Pi GST_N family, 99.7 3.7E-17 8.1E-22 88.9 5.6 61 8-69 2-72 (73)
28 cd03041 GST_N_2GST_N GST_N fam 99.7 7.6E-17 1.7E-21 88.5 6.2 63 8-71 2-77 (77)
29 cd03044 GST_N_EF1Bgamma GST_N 99.7 1.5E-16 3.3E-21 86.8 6.5 60 9-69 2-74 (75)
30 cd03060 GST_N_Omega_like GST_N 99.7 2E-16 4.3E-21 85.4 6.8 58 9-67 2-70 (71)
31 cd03056 GST_N_4 GST_N family, 99.7 2.5E-16 5.3E-21 85.0 6.8 60 8-68 1-73 (73)
32 cd03055 GST_N_Omega GST_N fami 99.7 3E-16 6.4E-21 88.3 7.3 63 5-68 16-89 (89)
33 cd03047 GST_N_2 GST_N family, 99.7 2.7E-16 5.8E-21 85.3 6.8 60 8-68 1-73 (73)
34 cd03042 GST_N_Zeta GST_N famil 99.7 4.1E-16 9E-21 84.1 6.6 60 8-68 1-73 (73)
35 cd03049 GST_N_3 GST_N family, 99.7 3.5E-16 7.7E-21 84.7 6.1 60 8-68 1-73 (73)
36 TIGR00862 O-ClC intracellular 99.7 1.1E-15 2.5E-20 99.4 9.6 70 17-87 30-101 (236)
37 cd03039 GST_N_Sigma_like GST_N 99.6 3.5E-16 7.6E-21 84.6 5.2 61 8-69 1-72 (72)
38 PTZ00057 glutathione s-transfe 99.6 2.9E-15 6.4E-20 95.3 9.4 77 6-89 3-97 (205)
39 cd03051 GST_N_GTT2_like GST_N 99.6 1E-15 2.2E-20 82.6 6.2 60 8-68 1-74 (74)
40 PRK10387 glutaredoxin 2; Provi 99.6 1.2E-15 2.5E-20 96.9 7.0 68 8-78 1-79 (210)
41 PF02798 GST_N: Glutathione S- 99.6 2.6E-15 5.6E-20 82.3 6.9 63 7-69 2-76 (76)
42 cd03075 GST_N_Mu GST_N family, 99.6 3.5E-15 7.7E-20 82.8 6.8 62 9-71 2-82 (82)
43 cd03077 GST_N_Alpha GST_N fami 99.6 3.9E-15 8.5E-20 82.1 6.8 61 8-72 2-77 (79)
44 cd03080 GST_N_Metaxin_like GST 99.6 7E-15 1.5E-19 80.2 6.7 57 8-72 2-75 (75)
45 cd03037 GST_N_GRX2 GST_N famil 99.6 9.9E-15 2.2E-19 78.6 6.0 60 8-69 1-71 (71)
46 cd03038 GST_N_etherase_LigE GS 99.6 1.6E-14 3.5E-19 80.2 6.4 54 17-72 27-84 (84)
47 cd03040 GST_N_mPGES2 GST_N fam 99.5 1.6E-14 3.5E-19 78.9 5.7 62 7-71 1-76 (77)
48 PF13409 GST_N_2: Glutathione 99.5 6.4E-14 1.4E-18 75.6 5.8 53 17-70 13-70 (70)
49 TIGR02182 GRXB Glutaredoxin, G 99.5 7E-14 1.5E-18 89.3 6.8 68 9-79 1-79 (209)
50 cd03043 GST_N_1 GST_N family, 99.5 7.7E-14 1.7E-18 75.8 6.0 51 17-68 21-73 (73)
51 KOG1695 Glutathione S-transfer 99.5 1.2E-13 2.7E-18 88.2 7.8 79 7-90 3-91 (206)
52 cd00570 GST_N_family Glutathio 99.5 4.2E-13 9E-18 70.7 6.7 60 8-68 1-71 (71)
53 KOG4420 Uncharacterized conser 99.5 2.3E-13 5.1E-18 88.9 6.6 73 7-80 26-111 (325)
54 cd03054 GST_N_Metaxin GST_N fa 99.4 8.3E-13 1.8E-17 71.3 6.3 46 17-70 27-72 (72)
55 PLN02907 glutamate-tRNA ligase 99.3 6.8E-12 1.5E-16 92.2 7.9 70 8-91 3-82 (722)
56 cd03079 GST_N_Metaxin2 GST_N f 99.2 5.2E-11 1.1E-15 64.9 6.0 56 8-70 11-74 (74)
57 KOG1422 Intracellular Cl- chan 98.9 5.9E-09 1.3E-13 66.4 7.3 58 17-75 32-89 (221)
58 TIGR02190 GlrX-dom Glutaredoxi 98.8 1.9E-08 4.1E-13 55.2 6.2 64 4-68 6-79 (79)
59 cd03078 GST_N_Metaxin1_like GS 98.7 7.7E-08 1.7E-12 52.2 6.4 46 17-70 27-72 (73)
60 COG2999 GrxB Glutaredoxin 2 [P 98.5 2.1E-07 4.5E-12 58.3 5.2 65 8-74 1-76 (215)
61 cd03029 GRX_hybridPRX5 Glutare 98.5 1.1E-06 2.3E-11 47.2 6.5 61 7-68 2-72 (72)
62 PRK10638 glutaredoxin 3; Provi 98.3 2.5E-06 5.4E-11 47.1 6.0 61 7-68 3-74 (83)
63 KOG4244 Failed axon connection 98.3 4.2E-06 9.2E-11 55.3 6.4 62 6-75 44-122 (281)
64 KOG3029 Glutathione S-transfer 98.2 4E-06 8.6E-11 56.1 5.7 61 7-70 90-160 (370)
65 TIGR02196 GlrX_YruB Glutaredox 98.1 8.9E-06 1.9E-10 42.9 4.9 60 7-67 1-73 (74)
66 cd02976 NrdH NrdH-redoxin (Nrd 98.0 2.1E-05 4.6E-10 41.3 4.3 51 8-59 2-63 (73)
67 cd03027 GRX_DEP Glutaredoxin ( 97.9 5.3E-05 1.2E-09 40.6 5.4 56 7-63 2-68 (73)
68 PRK10329 glutaredoxin-like pro 97.9 3.7E-05 7.9E-10 42.4 4.7 50 7-57 2-61 (81)
69 cd02066 GRX_family Glutaredoxi 97.8 8.6E-05 1.9E-09 38.7 5.4 58 8-66 2-70 (72)
70 TIGR02200 GlrX_actino Glutared 97.7 0.00017 3.7E-09 38.5 5.2 59 8-67 2-75 (77)
71 cd03418 GRX_GRXb_1_3_like Glut 97.7 0.0002 4.4E-09 38.2 5.2 59 8-67 2-72 (75)
72 TIGR02181 GRX_bact Glutaredoxi 97.5 0.00052 1.1E-08 37.1 5.1 60 8-68 1-71 (79)
73 TIGR02194 GlrX_NrdH Glutaredox 97.4 0.00029 6.3E-09 37.7 3.9 47 8-55 1-57 (72)
74 PF00462 Glutaredoxin: Glutare 97.3 0.00029 6.3E-09 36.2 2.5 49 8-57 1-60 (60)
75 cd03419 GRX_GRXh_1_2_like Glut 97.1 0.0041 8.8E-08 33.5 6.4 61 8-69 2-76 (82)
76 COG0695 GrxC Glutaredoxin and 97.1 0.0028 6.2E-08 34.8 5.6 51 7-58 2-65 (80)
77 PRK11200 grxA glutaredoxin 1; 97.0 0.0046 1E-07 33.9 5.9 65 7-72 2-84 (85)
78 PF10568 Tom37: Outer mitochon 96.9 0.0017 3.8E-08 35.0 3.5 43 17-67 25-71 (72)
79 TIGR02189 GlrX-like_plant Glut 96.6 0.025 5.3E-07 32.2 7.1 60 6-66 8-81 (99)
80 TIGR02183 GRXA Glutaredoxin, G 96.5 0.019 4E-07 31.7 6.0 65 8-72 2-83 (86)
81 PHA03050 glutaredoxin; Provisi 96.4 0.032 7E-07 32.3 6.7 59 6-65 13-88 (108)
82 TIGR02180 GRX_euk Glutaredoxin 96.3 0.041 8.9E-07 29.5 6.6 60 9-69 2-77 (84)
83 cd03028 GRX_PICOT_like Glutare 96.0 0.033 7.2E-07 31.0 5.3 50 17-67 34-84 (90)
84 PF11287 DUF3088: Protein of u 95.5 0.059 1.3E-06 31.5 4.9 50 23-72 44-108 (112)
85 TIGR00365 monothiol glutaredox 95.1 0.14 2.9E-06 29.0 5.7 60 6-66 12-87 (97)
86 COG4545 Glutaredoxin-related p 94.2 0.16 3.4E-06 27.8 4.2 51 7-58 3-77 (85)
87 KOG3027 Mitochondrial outer me 93.9 0.15 3.2E-06 33.2 4.4 57 8-71 29-92 (257)
88 PRK12759 bifunctional gluaredo 93.7 0.21 4.6E-06 35.3 5.2 58 7-65 3-79 (410)
89 PF05768 DUF836: Glutaredoxin- 93.1 0.6 1.3E-05 25.3 5.5 45 7-54 1-57 (81)
90 PF09635 MetRS-N: MetRS-N bind 92.3 0.13 2.8E-06 30.6 2.1 33 40-73 30-64 (122)
91 COG1393 ArsC Arsenate reductas 89.2 0.95 2.1E-05 26.6 3.9 23 7-29 2-34 (117)
92 cd03031 GRX_GRX_like Glutaredo 88.7 2.5 5.4E-05 25.9 5.6 49 17-66 27-80 (147)
93 TIGR00411 redox_disulf_1 small 88.5 2.4 5.1E-05 22.3 5.1 47 7-55 2-62 (82)
94 cd02973 TRX_GRX_like Thioredox 87.9 2.4 5.1E-05 21.6 5.5 48 7-58 2-64 (67)
95 TIGR01616 nitro_assoc nitrogen 87.7 1.3 2.9E-05 26.3 3.9 23 7-29 2-34 (126)
96 PRK10026 arsenate reductase; P 87.7 0.77 1.7E-05 28.0 2.9 22 7-28 3-34 (141)
97 cd03033 ArsC_15kD Arsenate Red 87.6 0.64 1.4E-05 27.1 2.5 23 8-30 2-34 (113)
98 PRK10853 putative reductase; P 86.7 0.7 1.5E-05 27.2 2.3 22 8-29 2-33 (118)
99 PRK12559 transcriptional regul 86.3 1.5 3.2E-05 26.3 3.6 24 8-31 2-35 (131)
100 cd03030 GRX_SH3BGR Glutaredoxi 86.1 4.4 9.4E-05 22.8 5.5 48 17-65 27-79 (92)
101 PRK13344 spxA transcriptional 85.8 1.7 3.7E-05 26.0 3.7 24 8-31 2-35 (132)
102 cd03032 ArsC_Spx Arsenate Redu 85.3 1.6 3.5E-05 25.2 3.4 23 8-30 2-34 (115)
103 PRK01655 spxA transcriptional 85.2 1.1 2.3E-05 26.8 2.6 23 8-30 2-34 (131)
104 PRK10824 glutaredoxin-4; Provi 83.9 6.2 0.00014 23.1 5.4 49 17-66 41-90 (115)
105 PTZ00062 glutaredoxin; Provisi 83.3 5.6 0.00012 25.7 5.4 49 17-66 139-188 (204)
106 cd03035 ArsC_Yffb Arsenate Red 83.2 2.3 5.1E-05 24.3 3.4 24 8-31 1-34 (105)
107 cd02977 ArsC_family Arsenate R 82.7 1.4 3.1E-05 24.9 2.4 23 8-30 1-33 (105)
108 cd03036 ArsC_like Arsenate Red 82.6 1.3 2.8E-05 25.6 2.1 24 8-31 1-34 (111)
109 cd03034 ArsC_ArsC Arsenate Red 81.1 1.7 3.6E-05 25.1 2.3 22 8-29 1-32 (112)
110 TIGR00014 arsC arsenate reduct 76.7 2.7 5.9E-05 24.3 2.3 22 8-29 1-32 (114)
111 TIGR00412 redox_disulf_2 small 76.6 9.3 0.0002 20.2 5.5 37 17-58 25-61 (76)
112 TIGR02681 phage_pRha phage reg 75.1 4.4 9.6E-05 23.5 2.8 25 47-71 2-27 (108)
113 TIGR01617 arsC_related transcr 74.1 3.6 7.8E-05 23.8 2.3 23 8-30 1-33 (117)
114 PHA02125 thioredoxin-like prot 71.1 13 0.00028 19.5 4.2 45 8-55 2-54 (75)
115 cd03026 AhpF_NTD_C TRX-GRX-lik 68.9 17 0.00038 20.0 5.0 48 7-58 15-77 (89)
116 TIGR01764 excise DNA binding d 68.3 11 0.00024 17.5 3.2 24 45-68 25-48 (49)
117 KOG1752 Glutaredoxin and relat 62.6 28 0.0006 20.1 6.7 60 6-66 14-87 (104)
118 KOG3028 Translocase of outer m 56.9 31 0.00067 23.9 4.4 29 41-70 45-74 (313)
119 PF12728 HTH_17: Helix-turn-he 55.8 23 0.0005 17.0 3.4 26 45-70 25-50 (51)
120 PF13192 Thioredoxin_3: Thiore 55.7 29 0.00064 18.2 4.9 39 17-60 25-63 (76)
121 PF04564 U-box: U-box domain; 53.8 16 0.00034 19.3 2.2 22 47-69 16-37 (73)
122 PF09314 DUF1972: Domain of un 53.1 12 0.00027 23.8 2.0 26 54-79 155-181 (185)
123 PRK09266 hypothetical protein; 47.5 20 0.00043 23.7 2.4 56 17-72 202-259 (266)
124 KOG2903 Predicted glutathione 47.2 30 0.00064 23.7 3.1 23 46-68 123-148 (319)
125 PF11588 DUF3243: Protein of u 42.1 18 0.00038 20.0 1.3 26 61-92 36-61 (81)
126 PF03711 OKR_DC_1_C: Orn/Lys/A 39.3 11 0.00025 22.7 0.3 36 34-71 78-113 (136)
127 TIGR03412 iscX_yfhJ FeS assemb 37.8 36 0.00078 17.9 1.9 16 58-73 3-18 (63)
128 TIGR03143 AhpF_homolog putativ 37.6 1.2E+02 0.0025 22.5 5.3 49 7-59 479-542 (555)
129 PF04908 SH3BGR: SH3-binding, 35.2 89 0.0019 17.8 4.7 58 8-66 3-86 (99)
130 PF03960 ArsC: ArsC family; I 35.2 32 0.0007 19.5 1.7 19 11-29 1-29 (110)
131 KOG3425 Uncharacterized conser 34.9 98 0.0021 18.6 3.7 52 17-69 60-121 (128)
132 cd01659 TRX_superfamily Thiore 34.8 51 0.0011 14.9 3.4 12 39-51 47-58 (69)
133 PRK10721 hypothetical protein; 34.3 44 0.00095 17.7 1.9 17 57-73 5-21 (66)
134 COG0435 ECM4 Predicted glutath 33.5 61 0.0013 22.4 3.0 38 46-84 129-174 (324)
135 PF09098 Dehyd-heme_bind: Quin 32.2 34 0.00073 21.6 1.5 19 54-72 48-68 (167)
136 cd02978 KaiB_like KaiB-like fa 29.6 89 0.0019 16.8 2.7 33 17-51 28-60 (72)
137 PF09147 DUF1933: Domain of un 28.8 1E+02 0.0022 19.9 3.3 29 41-70 118-148 (201)
138 PF07511 DUF1525: Protein of u 28.3 73 0.0016 18.8 2.4 25 45-69 82-107 (114)
139 COG3118 Thioredoxin domain-con 25.4 2.4E+02 0.0052 19.7 5.0 65 6-72 45-131 (304)
140 PF04384 Fe-S_assembly: Iron-s 25.3 71 0.0015 16.9 1.8 16 58-73 4-19 (64)
141 COG2975 Uncharacterized protei 25.2 73 0.0016 16.6 1.8 17 57-73 3-19 (64)
142 cd01790 Herp_N Homocysteine-re 25.0 80 0.0017 17.2 2.1 21 49-69 47-67 (79)
143 PRK08227 autoinducer 2 aldolas 23.7 1.3E+02 0.0028 20.4 3.2 35 35-71 182-216 (264)
144 COG1225 Bcp Peroxiredoxin [Pos 23.4 56 0.0012 20.3 1.4 48 7-56 32-98 (157)
145 PRK06852 aldolase; Validated 23.3 1.3E+02 0.0028 20.8 3.3 35 35-70 219-253 (304)
146 PRK10954 periplasmic protein d 22.5 1.1E+02 0.0024 19.4 2.7 15 45-59 166-180 (207)
147 PF11734 TilS_C: TilS substrat 22.2 1E+02 0.0022 16.2 2.1 13 45-57 38-50 (74)
148 COG1982 LdcC Arginine/lysine/o 21.5 72 0.0016 24.0 1.8 35 35-74 492-526 (557)
149 TIGR03759 conj_TIGR03759 integ 20.2 2E+02 0.0043 18.8 3.4 34 17-51 156-192 (200)
No 1
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.4e-24 Score=139.60 Aligned_cols=85 Identities=53% Similarity=0.857 Sum_probs=81.0
Q ss_pred CeeEEEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhcCC-C
Q 048672 6 SEVVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCWNN-T 74 (92)
Q Consensus 6 ~~~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~~~-~ 74 (92)
+.++||+++.| ++|||+|+.+.+|+.++++++++.||.|+|||||+++|..+.||..|++||++.+++ +
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~ 87 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGP 87 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCC
Confidence 56999999999 999999999999999999999999977799999999999999999999999999995 5
Q ss_pred CCCCCCCHHHHHhhhhC
Q 048672 75 AKLLPEDPHQRTKLHLG 91 (92)
Q Consensus 75 ~~l~p~~~~~~~~~~~~ 91 (92)
+ ++|.||.+||++|+|
T Consensus 88 ~-iLP~DPy~Ra~arfw 103 (231)
T KOG0406|consen 88 P-ILPSDPYERAQARFW 103 (231)
T ss_pred C-CCCCCHHHHHHHHHH
Confidence 6 999999999999998
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.90 E-value=2e-23 Score=133.25 Aligned_cols=84 Identities=31% Similarity=0.373 Sum_probs=78.2
Q ss_pred CeeEEEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhcCCCC
Q 048672 6 SEVVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCWNNTA 75 (92)
Q Consensus 6 ~~~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~ 75 (92)
++++||+++.| +++|++|+.+.+++.+++++|+++||. |+||+|+++|.+|+||.||++||+++|++..
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~-g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~ 87 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPY-QSVPTLVDRELTLYESRIIMEYLDERFPHPP 87 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCC-CCCCEEEECCEEeeCHHHHHHHHHHhCCCCC
Confidence 46999999866 999999999999998888899999999 9999999999999999999999999998876
Q ss_pred CCCCCCHHHHHhhhhC
Q 048672 76 KLLPEDPHQRTKLHLG 91 (92)
Q Consensus 76 ~l~p~~~~~~~~~~~~ 91 (92)
|+|.++.+++++++|
T Consensus 88 -l~p~~~~~ra~~~~~ 102 (211)
T PRK09481 88 -LMPVYPVARGESRLM 102 (211)
T ss_pred -CCCCCHHHHHHHHHH
Confidence 999999999998887
No 3
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.6e-22 Score=123.59 Aligned_cols=83 Identities=36% Similarity=0.697 Sum_probs=76.3
Q ss_pred CeeEEEecCch----------hhcCCCceEEEccCCC----CChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhc
Q 048672 6 SEVVLFRHWPR----------KLKGKAYVYVGEDLTN----KSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCW 71 (92)
Q Consensus 6 ~~~~Ly~~~~s----------~~~gi~~~~~~v~~~~----~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~ 71 (92)
.+.+||++|+| +.|||+|+.+.|++-. ...+|.++||. ++||+|++||.+|+||.||++||++.|
T Consensus 4 ~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm-~kVP~L~i~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM-EKVPTLVIDGLTLTESLAIIEYLEETY 82 (217)
T ss_pred ccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch-hhCCeEEECCEEeehHHHHHHHHHhcC
Confidence 46899999988 9999999999999852 35689999999 999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHhhhh
Q 048672 72 NNTAKLLPEDPHQRTKLHL 90 (92)
Q Consensus 72 ~~~~~l~p~~~~~~~~~~~ 90 (92)
|++. |+|.|+..||.+|.
T Consensus 83 P~pp-LLP~d~~KRA~~r~ 100 (217)
T KOG0868|consen 83 PDPP-LLPKDPHKRAKARA 100 (217)
T ss_pred CCCC-CCCcCHHHHHHHHH
Confidence 9999 99999999998874
No 4
>PRK15113 glutathione S-transferase; Provisional
Probab=99.87 E-value=2.6e-21 Score=123.69 Aligned_cols=85 Identities=21% Similarity=0.313 Sum_probs=75.0
Q ss_pred CeeEEEecC--ch----------hhcCCCceEEEccCCC---CChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhh
Q 048672 6 SEVVLFRHW--PR----------KLKGKAYVYVGEDLTN---KSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDC 70 (92)
Q Consensus 6 ~~~~Ly~~~--~s----------~~~gi~~~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~ 70 (92)
++++||+++ .| .++|++|+.+.+++.. +.++|+++||. |+||+|++||.+|+||.||++||++.
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~-g~VP~L~~~~~~l~ES~aI~~YL~~~ 82 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT-RRVPTLQHDDFELSESSAIAEYLEER 82 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC-CCCCEEEECCEEEecHHHHHHHHHHH
Confidence 578999964 34 9999999999999863 56899999999 99999999999999999999999999
Q ss_pred cCCCC--CCCCCCHHHHHhhhhC
Q 048672 71 WNNTA--KLLPEDPHQRTKLHLG 91 (92)
Q Consensus 71 ~~~~~--~l~p~~~~~~~~~~~~ 91 (92)
+++.. .++|.++.+++++++|
T Consensus 83 ~~~~~~~~l~p~~~~~ra~~~~~ 105 (214)
T PRK15113 83 FAPPAWERIYPADLQARARARQI 105 (214)
T ss_pred cCCCCccccCCCCHHHHHHHHHH
Confidence 97542 3889999999999887
No 5
>PLN02473 glutathione S-transferase
Probab=99.84 E-value=1.4e-20 Score=120.01 Aligned_cols=84 Identities=20% Similarity=0.217 Sum_probs=74.2
Q ss_pred eeEEEecCch----------hhcCCCceEEEccCC---CCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhcCC
Q 048672 7 EVVLFRHWPR----------KLKGKAYVYVGEDLT---NKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCWNN 73 (92)
Q Consensus 7 ~~~Ly~~~~s----------~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~~~ 73 (92)
.++||+++.| .++|++|+.+.+++. ++.++++++||. |+||+|+++|.+|+||.+|++||++.+++
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~YL~~~~~~ 80 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF-GQVPAIEDGDLKLFESRAIARYYATKYAD 80 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC-CCCCeEEECCEEEEehHHHHHHHHHHcCC
Confidence 3799998865 889999999999876 467899999999 99999999999999999999999999975
Q ss_pred C-CCCCCCCHHHHHhhhhC
Q 048672 74 T-AKLLPEDPHQRTKLHLG 91 (92)
Q Consensus 74 ~-~~l~p~~~~~~~~~~~~ 91 (92)
. ..|+|.++.+++++++|
T Consensus 81 ~~~~l~p~~~~~ra~~~~~ 99 (214)
T PLN02473 81 QGTDLLGKTLEHRAIVDQW 99 (214)
T ss_pred cCCCCCCCCHHHHHHHHHH
Confidence 3 23899999999998877
No 6
>PLN02395 glutathione S-transferase
Probab=99.83 E-value=4e-20 Score=117.82 Aligned_cols=83 Identities=24% Similarity=0.277 Sum_probs=73.5
Q ss_pred eEEEecCch---------hhcCCCceEEEccCC---CCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhcCCC-
Q 048672 8 VVLFRHWPR---------KLKGKAYVYVGEDLT---NKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCWNNT- 74 (92)
Q Consensus 8 ~~Ly~~~~s---------~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~~~~- 74 (92)
++||+.+.| .++|++|+.+.+++. +++++|.++||. |+||+|+++|.+|+||.+|++||++.|+..
T Consensus 3 ~~ly~~~~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~~ 81 (215)
T PLN02395 3 LKVYGPAFASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF-GVVPVIVDGDYKIFESRAIMRYYAEKYRSQG 81 (215)
T ss_pred EEEEcCCcCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHHHcCCCC
Confidence 799997755 889999999999875 457899999999 999999999999999999999999999753
Q ss_pred CCCCCCCHHHHHhhhhC
Q 048672 75 AKLLPEDPHQRTKLHLG 91 (92)
Q Consensus 75 ~~l~p~~~~~~~~~~~~ 91 (92)
..++|.++.+++++++|
T Consensus 82 ~~l~p~~~~~~~~~~~~ 98 (215)
T PLN02395 82 PDLLGKTIEERGQVEQW 98 (215)
T ss_pred cCcCCCChhHHHHHHHH
Confidence 23999999999998887
No 7
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=4.9e-20 Score=117.41 Aligned_cols=82 Identities=35% Similarity=0.436 Sum_probs=71.7
Q ss_pred eEEEecCch----------hhcCCCceEEEccCC--CCChhhhhcCCCCCccceEEeCCe-eeecHHHHHHHHHhhcCCC
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLT--NKSDLLLDYNPVHKKVPVLVYSGQ-SIAESLIILEYSDDCWNNT 74 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~--~~~~~~~~~~p~~g~vP~L~~~g~-~l~eS~~I~~yL~~~~~~~ 74 (92)
++||+++.| .++|++|+.+.|++. .+.++|.++||. |+||+|+++|. +|+||.||++||++.|+++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~-gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPL-GKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCC-CCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 478888877 999999999999997 478999999999 99999996654 9999999999999999988
Q ss_pred CCCCCCCHH---HHHhhhhC
Q 048672 75 AKLLPEDPH---QRTKLHLG 91 (92)
Q Consensus 75 ~~l~p~~~~---~~~~~~~~ 91 (92)
. |+|.++. ++++...|
T Consensus 80 ~-l~p~~~~~r~~r~~~~~~ 98 (211)
T COG0625 80 P-LLPADPLARRARALLLWW 98 (211)
T ss_pred C-cCCCCchhHHHHHHHHHH
Confidence 7 9998885 66666665
No 8
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.81 E-value=9.2e-20 Score=115.31 Aligned_cols=82 Identities=30% Similarity=0.408 Sum_probs=73.3
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEE-eCCeeeecHHHHHHHHHhhcCCCCC
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLV-YSGQSIAESLIILEYSDDCWNNTAK 76 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~eS~~I~~yL~~~~~~~~~ 76 (92)
++||+++.| +++|++|+.+.++.....+++.+.||. |+||+|+ ++|.+|+||.+|++||++.++++.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~-g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~- 78 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPL-GKVPALVTEEGECWFDSPIIAEYIELLNVAPA- 78 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCc-cCCCeEEeCCCCeeecHHHHHHHHHHhCCCCC-
Confidence 479999877 999999999988887667788899999 9999998 788999999999999999988766
Q ss_pred CCCCCHHHHHhhhhC
Q 048672 77 LLPEDPHQRTKLHLG 91 (92)
Q Consensus 77 l~p~~~~~~~~~~~~ 91 (92)
|+|.++.+++++++|
T Consensus 79 l~p~~~~~~a~~~~~ 93 (202)
T PRK10357 79 MLPRDPLAALRVRQL 93 (202)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999988766
No 9
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.81 E-value=1.7e-19 Score=115.25 Aligned_cols=80 Identities=23% Similarity=0.227 Sum_probs=69.2
Q ss_pred eEEEecCch---------hhcCCCceEEEccCCC---CChhhhhcCCCCCccceEEe-----CC--eeeecHHHHHHHHH
Q 048672 8 VVLFRHWPR---------KLKGKAYVYVGEDLTN---KSDLLLDYNPVHKKVPVLVY-----SG--QSIAESLIILEYSD 68 (92)
Q Consensus 8 ~~Ly~~~~s---------~~~gi~~~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~-----~g--~~l~eS~~I~~yL~ 68 (92)
++||+.+.+ +++|++|+.+.+++.. +.++|+++||. |+||+|++ || .+|+||.||++||+
T Consensus 2 ~~Ly~~~~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~-gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~ 80 (215)
T PRK13972 2 IDLYFAPTPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPN-NKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_pred eEEEECCCCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcC-CCCCEEEeCCCCCCCCceeEEcHHHHHHHHH
Confidence 789988744 9999999999998753 46899999999 99999996 45 47999999999999
Q ss_pred hhcCCCCCCCCCCHHHHHhhhhC
Q 048672 69 DCWNNTAKLLPEDPHQRTKLHLG 91 (92)
Q Consensus 69 ~~~~~~~~l~p~~~~~~~~~~~~ 91 (92)
+.++ . +.|.++.++++++.|
T Consensus 81 ~~~~--~-l~p~~~~~ra~~~~~ 100 (215)
T PRK13972 81 EKTG--L-FLSHETRERAATLQW 100 (215)
T ss_pred HhcC--C-CCCCCHHHHHHHHHH
Confidence 9885 3 778899999998877
No 10
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.81 E-value=7.4e-20 Score=115.48 Aligned_cols=82 Identities=27% Similarity=0.363 Sum_probs=70.5
Q ss_pred eEEEecCch---------hhcCCCceEEEccCCC----CChhhhhcCCCCCccceEE-eCCeeeecHHHHHHHHHhhcCC
Q 048672 8 VVLFRHWPR---------KLKGKAYVYVGEDLTN----KSDLLLDYNPVHKKVPVLV-YSGQSIAESLIILEYSDDCWNN 73 (92)
Q Consensus 8 ~~Ly~~~~s---------~~~gi~~~~~~v~~~~----~~~~~~~~~p~~g~vP~L~-~~g~~l~eS~~I~~yL~~~~~~ 73 (92)
|+||+.+.| +++||+|+.+.|++.. ..++|.++||. |+||+|+ +||.+|+||.+|++||++.+++
T Consensus 1 m~l~~~~~s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~-g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK-GQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccHHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC-CCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 578888765 9999999999999853 35789999999 9999998 6889999999999999999987
Q ss_pred CCCCC-CCCHHHHHhhhhC
Q 048672 74 TAKLL-PEDPHQRTKLHLG 91 (92)
Q Consensus 74 ~~~l~-p~~~~~~~~~~~~ 91 (92)
+. ++ |.++.++++++.|
T Consensus 80 ~~-l~~p~~~~~ra~~~~~ 97 (201)
T PRK10542 80 RQ-LLAPVGSLSRYHTIEW 97 (201)
T ss_pred cc-cCCCCCcHHHHHHHHH
Confidence 76 55 6678899887765
No 11
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.78 E-value=7.3e-19 Score=111.59 Aligned_cols=81 Identities=35% Similarity=0.620 Sum_probs=71.4
Q ss_pred EEEecCch----------hhcCCCceEEEccCC----CCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhcCCC
Q 048672 9 VLFRHWPR----------KLKGKAYVYVGEDLT----NKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCWNNT 74 (92)
Q Consensus 9 ~Ly~~~~s----------~~~gi~~~~~~v~~~----~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~~~~ 74 (92)
+||+++.| .++|++|+.+.+++. .+.+++.++||. |+||+|+++|.+|+||.+|++||++.+++.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~ 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-GLVPTLDIDGEVLTQSLAIIEYLEETYPDP 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-CcCCEEEECCEEeecHHHHHHHHHHhCCCC
Confidence 46766555 999999999999862 246789999998 999999999999999999999999999877
Q ss_pred CCCCCCCHHHHHhhhhC
Q 048672 75 AKLLPEDPHQRTKLHLG 91 (92)
Q Consensus 75 ~~l~p~~~~~~~~~~~~ 91 (92)
. ++|.++.+++++++|
T Consensus 80 ~-l~p~~~~~~a~~~~~ 95 (210)
T TIGR01262 80 P-LLPADPIKRARVRAL 95 (210)
T ss_pred C-CCCCCHHHHHHHHHH
Confidence 7 999999999999887
No 12
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.76 E-value=3.6e-18 Score=92.38 Aligned_cols=63 Identities=30% Similarity=0.383 Sum_probs=57.9
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhc
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCW 71 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~ 71 (92)
|+||+.+.| +++|++|+.+.++..++.++|.+.||. |++|+|+++|..++||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPY-GTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 579998776 999999999999988778899999999 999999999999999999999999864
No 13
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.6e-18 Score=110.49 Aligned_cols=84 Identities=31% Similarity=0.374 Sum_probs=74.9
Q ss_pred eeEEEecCch----------hhcCCCceEEEccCC---CCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhcC-
Q 048672 7 EVVLFRHWPR----------KLKGKAYVYVGEDLT---NKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCWN- 72 (92)
Q Consensus 7 ~~~Ly~~~~s----------~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~~- 72 (92)
.++||+++.| .++|++|+.+.+++. +..++|+++||. |+||+|+++|..++||.||+.||.+.|.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~-~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPL-GKVPALEDGGLTLWESHAILRYLAEKYGP 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcC-CCCCeEecCCeEEeeHHHHHHHHHHHcCC
Confidence 4789999887 999999999988875 679999999999 9999999999999999999999999986
Q ss_pred CCCCCCCCCHHHHHhhhhC
Q 048672 73 NTAKLLPEDPHQRTKLHLG 91 (92)
Q Consensus 73 ~~~~l~p~~~~~~~~~~~~ 91 (92)
.+..|+|.++.+++.+.+|
T Consensus 81 ~~~~l~p~~~~~ra~v~~~ 99 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQW 99 (226)
T ss_pred CCcccCCcCHHHHHHHHHH
Confidence 2223999999999999876
No 14
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.76 E-value=3.2e-18 Score=93.49 Aligned_cols=64 Identities=33% Similarity=0.472 Sum_probs=59.7
Q ss_pred EEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhcCCC
Q 048672 10 LFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCWNNT 74 (92)
Q Consensus 10 Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~~~~ 74 (92)
||+++.| +++||+|+.+.++...+.++|.+.||. |+||+|++||.+++||.+|++||++.|+++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~-~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPK-GKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTT-SBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhccc-ccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 6888877 999999999999988888999999999 999999999999999999999999999864
No 15
>PRK11752 putative S-transferase; Provisional
Probab=99.76 E-value=6e-18 Score=111.50 Aligned_cols=82 Identities=24% Similarity=0.227 Sum_probs=70.0
Q ss_pred CeeEEEecCch---------hhc------CCCceEEEccCC---CCChhhhhcCCCCCccceEEeC----CeeeecHHHH
Q 048672 6 SEVVLFRHWPR---------KLK------GKAYVYVGEDLT---NKSDLLLDYNPVHKKVPVLVYS----GQSIAESLII 63 (92)
Q Consensus 6 ~~~~Ly~~~~s---------~~~------gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~----g~~l~eS~~I 63 (92)
.+++||+.+.+ +++ |++|+.+.|++. +.+++|+++||. |+||+|+++ |.+|+||.||
T Consensus 43 ~~~~Ly~~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~-GkVP~Lv~~dg~~~~~L~ES~AI 121 (264)
T PRK11752 43 HPLQLYSLGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN-SKIPALLDRSGNPPIRVFESGAI 121 (264)
T ss_pred CCeEEecCCCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-CCCCEEEeCCCCCCeEEEcHHHH
Confidence 36999997644 665 889999999875 347899999999 999999964 3689999999
Q ss_pred HHHHHhhcCCCCCCCCCCHHHHHhhhhC
Q 048672 64 LEYSDDCWNNTAKLLPEDPHQRTKLHLG 91 (92)
Q Consensus 64 ~~yL~~~~~~~~~l~p~~~~~~~~~~~~ 91 (92)
++||++.++ . |+|.++.++++++.|
T Consensus 122 l~YL~~~~~--~-L~P~~~~era~v~~w 146 (264)
T PRK11752 122 LLYLAEKFG--A-FLPKDLAARTETLNW 146 (264)
T ss_pred HHHHHHhcC--C-cCCCCHHHHHHHHHH
Confidence 999999986 3 899999999999877
No 16
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.75 E-value=4.7e-18 Score=92.60 Aligned_cols=60 Identities=23% Similarity=0.382 Sum_probs=54.0
Q ss_pred eEEEecCch----------hhcCCCceEEEccCC---CCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHH
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLT---NKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSD 68 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~ 68 (92)
++||+++.| +++|++|+.+.+++. ++.++|.++||. |+||+|+++|.+|+||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~-g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPT-GEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 478988866 999999999999874 457889999999 999999999999999999999985
No 17
>PLN02378 glutathione S-transferase DHAR1
Probab=99.75 E-value=7e-18 Score=107.98 Aligned_cols=82 Identities=21% Similarity=0.215 Sum_probs=68.3
Q ss_pred CCCeeEEEecCch-------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhcCCCCC
Q 048672 4 QQSEVVLFRHWPR-------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCWNNTAK 76 (92)
Q Consensus 4 ~~~~~~Ly~~~~s-------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~~ 76 (92)
|.....++.+|.| +++|++|+.+.|++..++++|+++||. |+||+|+++|.+|+||.+|++||+++|++..
T Consensus 11 ~~~~~~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~-G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~- 88 (213)
T PLN02378 11 VGAPDHLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQ-GKVPVLKIDDKWVTDSDVIVGILEEKYPDPP- 88 (213)
T ss_pred CCCCCCCCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHhCCCCC-
Confidence 3333446666777 999999999999998888899999999 9999999999999999999999999998755
Q ss_pred CCCCCHHHHHhhh
Q 048672 77 LLPEDPHQRTKLH 89 (92)
Q Consensus 77 l~p~~~~~~~~~~ 89 (92)
+. ++.+++.+.
T Consensus 89 l~--~~~~~a~i~ 99 (213)
T PLN02378 89 LK--TPAEFASVG 99 (213)
T ss_pred CC--CHHHHHHHH
Confidence 53 566666553
No 18
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.74 E-value=1.1e-17 Score=91.02 Aligned_cols=64 Identities=59% Similarity=0.997 Sum_probs=57.2
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhc
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCW 71 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~ 71 (92)
|+||+++.| +++|++|+.+.++...+.++|.+.||.+|++|+|+++|.+++||.+|++||++.+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 589998877 9999999999998887788999999932899999999999999999999999764
No 19
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.73 E-value=1.6e-17 Score=109.61 Aligned_cols=80 Identities=24% Similarity=0.231 Sum_probs=69.9
Q ss_pred eeEEEecCch-------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhcCCCCCCCC
Q 048672 7 EVVLFRHWPR-------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCWNNTAKLLP 79 (92)
Q Consensus 7 ~~~Ly~~~~s-------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~~l~p 79 (92)
.++++.+|.| +++|++|+.+.+++..++++|.++||. |+||+|+++|.+|+||.+|++||++.|+++. +.
T Consensus 67 ~~~~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~-GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~-L~- 143 (265)
T PLN02817 67 PNKLGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPE-GKVPVVKLDEKWVADSDVITQALEEKYPDPP-LA- 143 (265)
T ss_pred CCcCCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCC-CCCCEEEECCEEEecHHHHHHHHHHHCCCCC-CC-
Confidence 3567777777 999999999999998889999999999 9999999888999999999999999998765 63
Q ss_pred CCHHHHHhhhh
Q 048672 80 EDPHQRTKLHL 90 (92)
Q Consensus 80 ~~~~~~~~~~~ 90 (92)
++.++++++.
T Consensus 144 -~~~era~i~~ 153 (265)
T PLN02817 144 -TPPEKASVGS 153 (265)
T ss_pred -CHHHHHHHHH
Confidence 5777777654
No 20
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.73 E-value=2.9e-17 Score=89.41 Aligned_cols=64 Identities=28% Similarity=0.329 Sum_probs=56.9
Q ss_pred eEEEecCch---------hhcCCCceEEEccCC---CCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhcC
Q 048672 8 VVLFRHWPR---------KLKGKAYVYVGEDLT---NKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCWN 72 (92)
Q Consensus 8 ~~Ly~~~~s---------~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~~ 72 (92)
++||+++.+ +++|++|+.+.++.. .+.++|.+.||. +++|+|+++|..++||.+|++||++.|+
T Consensus 1 ~~l~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPRSRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL-GKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCCCChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 478887755 999999999999874 467899999999 9999999999999999999999998874
No 21
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.73 E-value=2.5e-17 Score=89.95 Aligned_cols=63 Identities=27% Similarity=0.343 Sum_probs=55.9
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCC---CChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhc
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTN---KSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCW 71 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~ 71 (92)
++||+++.| +++|++|+.+.++... ..++|.+.||. |++|+|+++|..++||.||++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF-GKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 478998877 8999999999998753 35789999999 999999999999999999999999864
No 22
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.72 E-value=2.8e-17 Score=89.92 Aligned_cols=64 Identities=31% Similarity=0.398 Sum_probs=56.2
Q ss_pred eEEEecCch---------hhcCCCceEEEccCCC---CChhhhhcCCCCCccceEEeC-CeeeecHHHHHHHHHhhcC
Q 048672 8 VVLFRHWPR---------KLKGKAYVYVGEDLTN---KSDLLLDYNPVHKKVPVLVYS-GQSIAESLIILEYSDDCWN 72 (92)
Q Consensus 8 ~~Ly~~~~s---------~~~gi~~~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~~-g~~l~eS~~I~~yL~~~~~ 72 (92)
++||+++.+ +++|++|+.+.++... +.++|.+.||. |++|+|+++ |..++||.+|++||++.||
T Consensus 1 ~~Ly~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~-~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGACSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPK-GQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCCchHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCC-CCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 478888765 9999999999888753 57899999999 999999966 8999999999999999875
No 23
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.72 E-value=4.1e-17 Score=90.08 Aligned_cols=64 Identities=25% Similarity=0.369 Sum_probs=56.6
Q ss_pred eEEEecCch---------hhcCCCceEEEccCC---CCChhhhhcCCCCCccceEEeC---CeeeecHHHHHHHHHhhcC
Q 048672 8 VVLFRHWPR---------KLKGKAYVYVGEDLT---NKSDLLLDYNPVHKKVPVLVYS---GQSIAESLIILEYSDDCWN 72 (92)
Q Consensus 8 ~~Ly~~~~s---------~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~---g~~l~eS~~I~~yL~~~~~ 72 (92)
++||+++.+ +++|++|+.+.+++. ++.++|.+.||. |+||+|+++ |..|+||.+|++||+++|+
T Consensus 2 ~~Ly~~~~~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~~ 80 (81)
T cd03048 2 ITLYTHGTPNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN-GRIPAIVDHNGTPLTVFESGAILLYLAEKYD 80 (81)
T ss_pred eEEEeCCCCChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC-CCCCEEEeCCCCceEEEcHHHHHHHHHHHhC
Confidence 789987644 999999999999864 457899999999 999999976 8999999999999999875
No 24
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.72 E-value=3.3e-17 Score=88.82 Aligned_cols=61 Identities=28% Similarity=0.260 Sum_probs=54.8
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCC---CChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHh
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTN---KSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDD 69 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~ 69 (92)
++||+++.| +++|++|+.+.+++.. ..++|.+.||. |++|+|+++|..|+||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQ-HTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcC-CCCCEEEECCEEEEcHHHHHHHHhC
Confidence 579999877 9999999999998753 46899999999 9999999999999999999999974
No 25
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.71 E-value=7.9e-17 Score=87.79 Aligned_cols=62 Identities=31% Similarity=0.325 Sum_probs=55.6
Q ss_pred eEEEecCch----------hhcCCCceEEEccCC---CCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhh
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLT---NKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDC 70 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~ 70 (92)
++||+++.| +++|++|+.+.++.. ++.++|.+.||. |++|+|+++|..++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~-~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF-GQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 789998866 999999999988875 356889999998 99999999999999999999999863
No 26
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.70 E-value=5.7e-17 Score=91.65 Aligned_cols=57 Identities=25% Similarity=0.376 Sum_probs=54.2
Q ss_pred hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhcCCC
Q 048672 17 KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCWNNT 74 (92)
Q Consensus 17 ~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~~~~ 74 (92)
+++|++|+.+.+++.+++++|+++||. |++|+|+++|.+++||.+|++||++.++.+
T Consensus 33 ~eKgi~ye~~~vd~~~~p~~~~~~nP~-g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 33 WLKGVVFNVTTVDMKRKPEDLKDLAPG-TQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred HHCCCceEEEEeCCCCCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 999999999999999989999999998 999999999999999999999999998654
No 27
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.70 E-value=3.7e-17 Score=88.85 Aligned_cols=61 Identities=13% Similarity=0.011 Sum_probs=54.6
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHh
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDD 69 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~ 69 (92)
++||+++.| .++|++|+.+.+++.+..+++.+.||. |++|+|+++|..++||.+|++||++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLF-GQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCC-CCCCEEEECCEEEEcHHHHHHHHhc
Confidence 689998755 999999999999876556689999998 9999999999999999999999975
No 28
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.69 E-value=7.6e-17 Score=88.45 Aligned_cols=63 Identities=21% Similarity=0.172 Sum_probs=54.7
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCC-CChhhhhcCCCCCccceEEe--CCeeeecHHHHHHHHHhhc
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTN-KSDLLLDYNPVHKKVPVLVY--SGQSIAESLIILEYSDDCW 71 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~--~g~~l~eS~~I~~yL~~~~ 71 (92)
++||+++.| .++|++|+.+.++... ..+++.+.||. |+||+|++ +|..++||.+|++||++.|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCC-CcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 789999887 9999999998886543 35789999998 99999996 4789999999999999864
No 29
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.68 E-value=1.5e-16 Score=86.77 Aligned_cols=60 Identities=27% Similarity=0.240 Sum_probs=54.1
Q ss_pred EEEecCch----------hhcCCCceEEEccCC--CCChhhhhcCCCCCccceEEe-CCeeeecHHHHHHHHHh
Q 048672 9 VLFRHWPR----------KLKGKAYVYVGEDLT--NKSDLLLDYNPVHKKVPVLVY-SGQSIAESLIILEYSDD 69 (92)
Q Consensus 9 ~Ly~~~~s----------~~~gi~~~~~~v~~~--~~~~~~~~~~p~~g~vP~L~~-~g~~l~eS~~I~~yL~~ 69 (92)
+||+++.| +++|++|+.+.+++. ++.++|.++||. |++|+|+. +|..|+||.||++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~-~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL-GKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC-CCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 68888876 999999999999986 467899999999 99999995 68999999999999986
No 30
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.68 E-value=2e-16 Score=85.43 Aligned_cols=58 Identities=33% Similarity=0.449 Sum_probs=53.1
Q ss_pred EEEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEe-CCeeeecHHHHHHHH
Q 048672 9 VLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVY-SGQSIAESLIILEYS 67 (92)
Q Consensus 9 ~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~-~g~~l~eS~~I~~yL 67 (92)
+||+++.| +++|++|+.+.+++.++.++|.+.||. |+||+|++ ||..|+||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~-~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPK-GTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCC-CCCCEEEECCCcEEecHHHHHHhh
Confidence 68888777 999999999999988778899999999 99999996 599999999999997
No 31
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.68 E-value=2.5e-16 Score=84.96 Aligned_cols=60 Identities=33% Similarity=0.460 Sum_probs=53.8
Q ss_pred eEEEecCch----------hhcCCCceEEEccCC---CCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHH
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLT---NKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSD 68 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~ 68 (92)
++||+++.| +++|++|+.+.+++. ++.++|.+.||. |++|+|+++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN-GEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 479998877 999999999999864 357889999998 999999999999999999999984
No 32
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.68 E-value=3e-16 Score=88.32 Aligned_cols=63 Identities=33% Similarity=0.426 Sum_probs=56.9
Q ss_pred CCeeEEEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeC-CeeeecHHHHHHHHH
Q 048672 5 QSEVVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYS-GQSIAESLIILEYSD 68 (92)
Q Consensus 5 ~~~~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~-g~~l~eS~~I~~yL~ 68 (92)
.++++||+.+.| +++|++|+.+.++...+.++|.+.||. +++|+|+++ |..|+||.+|++||+
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~-~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQ-GKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCC-CCcCEEEECCCCEEECHHHHHHhhC
Confidence 467999999887 999999999999987767789999999 999999965 899999999999985
No 33
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.67 E-value=2.7e-16 Score=85.31 Aligned_cols=60 Identities=23% Similarity=0.264 Sum_probs=53.1
Q ss_pred eEEEecCch----------hhcCCCceEEEccCC---CCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHH
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLT---NKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSD 68 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~ 68 (92)
++||+++.| +++|++|+.+.++.. .+.++|.+.||. |++|+|+++|..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~-~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN-GRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC-CCCCEEEECCEEEECHHHHHHHhC
Confidence 478988766 999999999988764 346889999999 999999999999999999999984
No 34
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.66 E-value=4.1e-16 Score=84.14 Aligned_cols=60 Identities=37% Similarity=0.563 Sum_probs=53.4
Q ss_pred eEEEecCch----------hhcCCCceEEEccCC---CCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHH
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLT---NKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSD 68 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~ 68 (92)
++||+++.| +++|++|+.+.++.. ++.++|.+.||. |++|+|+++|..++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ-GLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 478888766 999999999999874 356889999998 999999999999999999999985
No 35
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.66 E-value=3.5e-16 Score=84.72 Aligned_cols=60 Identities=28% Similarity=0.359 Sum_probs=53.8
Q ss_pred eEEEecCch----------hh--cCCCceEEEccCCCCChhhhhcCCCCCccceEE-eCCeeeecHHHHHHHHH
Q 048672 8 VVLFRHWPR----------KL--KGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLV-YSGQSIAESLIILEYSD 68 (92)
Q Consensus 8 ~~Ly~~~~s----------~~--~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~eS~~I~~yL~ 68 (92)
++||+++.| ++ +|++|+.+.++...+.++|.+.||. |++|+|+ ++|..+.||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPL-GKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCC-CCCCEEEECCCCEEECHHHHHhhhC
Confidence 478988877 77 8899999999887778899999998 9999998 68899999999999985
No 36
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.66 E-value=1.1e-15 Score=99.43 Aligned_cols=70 Identities=26% Similarity=0.364 Sum_probs=61.4
Q ss_pred hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhcCCC--CCCCCCCHHHHHh
Q 048672 17 KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCWNNT--AKLLPEDPHQRTK 87 (92)
Q Consensus 17 ~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~~~~--~~l~p~~~~~~~~ 87 (92)
.++|++|+.+.|++..++++|+++||. |+||||+++|.+|+||.+|++||++.|+.+ ..+.|.++..++.
T Consensus 30 ~ekgi~~e~~~vd~~~~~~~fl~inP~-g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~~~~~~~~ 101 (236)
T TIGR00862 30 WLKGVVFNVTTVDLKRKPEDLQNLAPG-THPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPKHPESNTA 101 (236)
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHCcC-CCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCCCHHHHHH
Confidence 899999999999999888999999999 999999999999999999999999999652 2267777665554
No 37
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.65 E-value=3.5e-16 Score=84.57 Aligned_cols=61 Identities=25% Similarity=0.194 Sum_probs=52.5
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCC-CChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHh
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTN-KSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDD 69 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~ 69 (92)
++||+++.| +++|++|+.+.++... ...+|.+.||. |++|+|+++|..++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPF-GQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcC-CCCCEEEECCEEEEecHHHHHHhhC
Confidence 478888765 9999999999988753 33458899998 9999999999999999999999974
No 38
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.63 E-value=2.9e-15 Score=95.26 Aligned_cols=77 Identities=22% Similarity=0.283 Sum_probs=60.6
Q ss_pred CeeEEEecCch----------hhcCCCceEEEccCCCCChhhh--------hcCCCCCccceEEeCCeeeecHHHHHHHH
Q 048672 6 SEVVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLL--------DYNPVHKKVPVLVYSGQSIAESLIILEYS 67 (92)
Q Consensus 6 ~~~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~--------~~~p~~g~vP~L~~~g~~l~eS~~I~~yL 67 (92)
++++||+++.+ +++|++|+.+.++. .. +.++ ..||. |+||+|++||.+|+||.||++||
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~-~~-~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~eS~AI~~YL 79 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE-NG-DAFIEFKNFKKEKDTPF-EQVPILEMDNIIFAQSQAIVRYL 79 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc-cc-hHHHHHHhccccCCCCC-CCCCEEEECCEEEecHHHHHHHH
Confidence 45899998644 99999999987743 22 2343 48998 99999999999999999999999
Q ss_pred HhhcCCCCCCCCCCHHHHHhhh
Q 048672 68 DDCWNNTAKLLPEDPHQRTKLH 89 (92)
Q Consensus 68 ~~~~~~~~~l~p~~~~~~~~~~ 89 (92)
++.++ +.+.+..+++.+.
T Consensus 80 a~~~~----~~~~~~~~~~~~~ 97 (205)
T PTZ00057 80 SKKYK----ICGESELNEFYAD 97 (205)
T ss_pred HHHcC----CCCCCHHHHHHHH
Confidence 99996 4455666665554
No 39
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.63 E-value=1e-15 Score=82.57 Aligned_cols=60 Identities=33% Similarity=0.405 Sum_probs=53.0
Q ss_pred eEEEecCch----------hhcCCCceEEEccCC---CCChhhhhcCCCCCccceEE-eCCeeeecHHHHHHHHH
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLT---NKSDLLLDYNPVHKKVPVLV-YSGQSIAESLIILEYSD 68 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~-~~g~~l~eS~~I~~yL~ 68 (92)
++||+++.| +++|++|+.+.+++. ...++|.+.||. |++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPA-GTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCC-CCCCEEEeCCCCEEecHHHHHHHhC
Confidence 589999876 999999999999874 346789999999 9999999 68899999999999985
No 40
>PRK10387 glutaredoxin 2; Provisional
Probab=99.63 E-value=1.2e-15 Score=96.87 Aligned_cols=68 Identities=22% Similarity=0.183 Sum_probs=56.2
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEE-eCCeeeecHHHHHHHHHhhcCCCCC
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLV-YSGQSIAESLIILEYSDDCWNNTAK 76 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~eS~~I~~yL~~~~~~~~~ 76 (92)
|+||+++.| +++|++|+.+.++..... ...+.||. |+||+|+ ++|..|+||.+|++||+++|+++.
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~~~~~p~-~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~- 77 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEA-TPIRMIGQ-KQVPILQKDDGSYMPESLDIVHYIDELDGKPL- 77 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hHHHhcCC-cccceEEecCCeEecCHHHHHHHHHHhCCCcc-
Confidence 589998877 999999999888654322 23678998 9999995 899999999999999999998754
Q ss_pred CC
Q 048672 77 LL 78 (92)
Q Consensus 77 l~ 78 (92)
+.
T Consensus 78 l~ 79 (210)
T PRK10387 78 LT 79 (210)
T ss_pred CC
Confidence 53
No 41
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.62 E-value=2.6e-15 Score=82.26 Aligned_cols=63 Identities=35% Similarity=0.435 Sum_probs=52.6
Q ss_pred eeEEEecCch--------hhcCCCceEEEccCC---CCChhhhhcCCCCCccceEEeC-CeeeecHHHHHHHHHh
Q 048672 7 EVVLFRHWPR--------KLKGKAYVYVGEDLT---NKSDLLLDYNPVHKKVPVLVYS-GQSIAESLIILEYSDD 69 (92)
Q Consensus 7 ~~~Ly~~~~s--------~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~-g~~l~eS~~I~~yL~~ 69 (92)
++++|..+.+ +++|++|+.+.+++. ++.++|.+.||..|++|+|+++ |..|+||.||++||++
T Consensus 2 ~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 3677777666 999999999999985 3459999999954899999988 9999999999999985
No 42
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.61 E-value=3.5e-15 Score=82.84 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=49.4
Q ss_pred EEEecCch----------hhcCCCceEEEccCCC----CChhhhh-c----CCCCCccceEEeCCeeeecHHHHHHHHHh
Q 048672 9 VLFRHWPR----------KLKGKAYVYVGEDLTN----KSDLLLD-Y----NPVHKKVPVLVYSGQSIAESLIILEYSDD 69 (92)
Q Consensus 9 ~Ly~~~~s----------~~~gi~~~~~~v~~~~----~~~~~~~-~----~p~~g~vP~L~~~g~~l~eS~~I~~yL~~ 69 (92)
+||++..+ +++|++|+.+.+++.. +.+++.+ . +|. |+||+|++||..|+||.||++||++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~-g~vP~L~~~g~~l~ES~AIl~YLa~ 80 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDF-PNLPYYIDGDVKLTQSNAILRYIAR 80 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcC-CCCCEEEECCEEEeehHHHHHHHhh
Confidence 56776544 9999999999998753 1244542 2 298 9999999999999999999999997
Q ss_pred hc
Q 048672 70 CW 71 (92)
Q Consensus 70 ~~ 71 (92)
++
T Consensus 81 ~~ 82 (82)
T cd03075 81 KH 82 (82)
T ss_pred cC
Confidence 64
No 43
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.61 E-value=3.9e-15 Score=82.06 Aligned_cols=61 Identities=20% Similarity=0.225 Sum_probs=50.6
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCCCChhhhhcC-----CCCCccceEEeCCeeeecHHHHHHHHHhhcC
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYN-----PVHKKVPVLVYSGQSIAESLIILEYSDDCWN 72 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~-----p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~~ 72 (92)
++||+++.+ +++|++|+.+.++.. ++|.+.+ |. |+||+|++||..|+||.||++||+++++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~-g~vP~L~~~g~~l~ES~AI~~YL~~~~~ 77 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMF-QQVPMVEIDGMKLVQTRAILNYIAGKYN 77 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCC-CCCCEEEECCEEEeeHHHHHHHHHHHcC
Confidence 589998765 999999999988753 3443333 57 9999999999999999999999999875
No 44
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.59 E-value=7e-15 Score=80.18 Aligned_cols=57 Identities=21% Similarity=0.399 Sum_probs=49.4
Q ss_pred eEEEecCc-------h----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhh
Q 048672 8 VVLFRHWP-------R----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDC 70 (92)
Q Consensus 8 ~~Ly~~~~-------s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~ 70 (92)
++||+++. | +++|++|+.+.++. .+.||. |++|+|+++|..+.||.+|++||+++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~-------~~~~p~-g~vPvl~~~g~~l~eS~~I~~yL~~~ 73 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL-------AKRSPK-GKLPFIELNGEKIADSELIIDHLEEK 73 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc-------ccCCCC-CCCCEEEECCEEEcCHHHHHHHHHHH
Confidence 68898873 2 99999999887764 268998 99999999999999999999999987
Q ss_pred cC
Q 048672 71 WN 72 (92)
Q Consensus 71 ~~ 72 (92)
|.
T Consensus 74 ~~ 75 (75)
T cd03080 74 YG 75 (75)
T ss_pred cC
Confidence 63
No 45
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.57 E-value=9.9e-15 Score=78.63 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=50.2
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeC-CeeeecHHHHHHHHHh
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYS-GQSIAESLIILEYSDD 69 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~-g~~l~eS~~I~~yL~~ 69 (92)
|+||+++.| +++|++|+.+.++... .....+.+|. |++|+|+++ |..+.||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~-~~~~~~~~~~-~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD-EATPIRMIGA-KQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc-hHHHHHhcCC-CccCEEEeCCCeEeehHHHHHHHHhC
Confidence 578998877 9999999999887543 2345678998 999999965 8999999999999974
No 46
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.56 E-value=1.6e-14 Score=80.24 Aligned_cols=54 Identities=28% Similarity=0.415 Sum_probs=46.4
Q ss_pred hhcCCCceEEEccCCCC---ChhhhhcCCCCCccceEEeC-CeeeecHHHHHHHHHhhcC
Q 048672 17 KLKGKAYVYVGEDLTNK---SDLLLDYNPVHKKVPVLVYS-GQSIAESLIILEYSDDCWN 72 (92)
Q Consensus 17 ~~~gi~~~~~~v~~~~~---~~~~~~~~p~~g~vP~L~~~-g~~l~eS~~I~~yL~~~~~ 72 (92)
.++|++|+.+.++.... ..++ +.||. |++|+|+++ |..++||.+|++||+++|+
T Consensus 27 ~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~-~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 27 NHKGLEYKTVPVEFPDIPPILGEL-TSGGF-YTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred HhCCCCCeEEEecCCCcccccccc-cCCCC-ceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 89999999999887532 2334 78998 999999988 8999999999999999875
No 47
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.55 E-value=1.6e-14 Score=78.88 Aligned_cols=62 Identities=21% Similarity=0.375 Sum_probs=51.2
Q ss_pred eeEEEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeC----CeeeecHHHHHHHHHhhc
Q 048672 7 EVVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYS----GQSIAESLIILEYSDDCW 71 (92)
Q Consensus 7 ~~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~----g~~l~eS~~I~~yL~~~~ 71 (92)
+++||+++.| .++|++|+.+.++.... ++ ++.+|. ++||+|+++ |.+|+||.+|++||++..
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~~-~~-~~~~~~-~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVSR-KE-IKWSSY-KKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchhH-HH-HHHhCC-CccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 3789999877 99999999998876432 23 367998 999999954 789999999999999753
No 48
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.50 E-value=6.4e-14 Score=75.55 Aligned_cols=53 Identities=43% Similarity=0.529 Sum_probs=45.5
Q ss_pred hhcCCCceEEEccC----CCCChhhhhcCCCCCccceEEe-CCeeeecHHHHHHHHHhh
Q 048672 17 KLKGKAYVYVGEDL----TNKSDLLLDYNPVHKKVPVLVY-SGQSIAESLIILEYSDDC 70 (92)
Q Consensus 17 ~~~gi~~~~~~v~~----~~~~~~~~~~~p~~g~vP~L~~-~g~~l~eS~~I~~yL~~~ 70 (92)
+++|++|+...+.. ..+.++|.+.||. |+||+|++ +|.++.||.+|++||+++
T Consensus 13 ~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 13 EEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-GKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp HHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred HHhCCCCEEEEEeeecCccccChhhhccCcC-eEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 89999999988844 2456899999999 99999995 899999999999999873
No 49
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.50 E-value=7e-14 Score=89.32 Aligned_cols=68 Identities=22% Similarity=0.134 Sum_probs=54.6
Q ss_pred EEEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEE-eCCeeeecHHHHHHHHHhhcCCCCCC
Q 048672 9 VLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLV-YSGQSIAESLIILEYSDDCWNNTAKL 77 (92)
Q Consensus 9 ~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~eS~~I~~yL~~~~~~~~~l 77 (92)
+||++..| +++|++|+.+.+..... ....+.||. |+||+|+ ++|.+|+||.+|++||++.|+.+. +
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~~~~np~-g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~-~ 77 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETPIRMIGA-KQVPILQKDDGRAMPESLDIVAYFDKLDGEPL-L 77 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcc-hhHHHhcCC-CCcceEEeeCCeEeccHHHHHHHHHHhCCCcc-C
Confidence 46776655 99999999887754432 234789998 9999998 899999999999999999997643 4
Q ss_pred CC
Q 048672 78 LP 79 (92)
Q Consensus 78 ~p 79 (92)
.+
T Consensus 78 ~~ 79 (209)
T TIGR02182 78 TG 79 (209)
T ss_pred CC
Confidence 33
No 50
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.50 E-value=7.7e-14 Score=75.79 Aligned_cols=51 Identities=33% Similarity=0.461 Sum_probs=46.6
Q ss_pred hhcCCCceEEEccCCC--CChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHH
Q 048672 17 KLKGKAYVYVGEDLTN--KSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSD 68 (92)
Q Consensus 17 ~~~gi~~~~~~v~~~~--~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~ 68 (92)
+++|++|+.+.+++.. +.++|.+.||. |++|+|+++|.+++||.+|++||+
T Consensus 21 ~~~gl~~e~~~v~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 21 KAAGIPFEEILVPLYTPDTRARILEFSPT-GKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred HHcCCCCEEEEeCCCCccccHHHHhhCCC-CcCCEEEECCEEEEcHHHHHHHhC
Confidence 8999999999998753 46889999999 999999999999999999999984
No 51
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.2e-13 Score=88.18 Aligned_cols=79 Identities=19% Similarity=0.231 Sum_probs=68.2
Q ss_pred eeEEEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhcCCCCC
Q 048672 7 EVVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCWNNTAK 76 (92)
Q Consensus 7 ~~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~~ 76 (92)
.++|+.+... +..|++|+.+.+...+.........|. ||+|+|..||..|.+|.||++||+++|+
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pf-gqlP~l~vDg~~i~QS~AI~RyLArk~g---- 77 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPF-GQLPVLEVDGKKLVQSRAILRYLARKFG---- 77 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCC-CCCCEEeECCEeeccHHHHHHHHHHHhC----
Confidence 4788877655 999999999999876543445566898 9999999999999999999999999998
Q ss_pred CCCCCHHHHHhhhh
Q 048672 77 LLPEDPHQRTKLHL 90 (92)
Q Consensus 77 l~p~~~~~~~~~~~ 90 (92)
+.+.++.|+|++.+
T Consensus 78 l~Gkt~~E~a~vD~ 91 (206)
T KOG1695|consen 78 LAGKTEEEEAWVDM 91 (206)
T ss_pred cCCCCHHHHHHHHH
Confidence 99999999999875
No 52
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.46 E-value=4.2e-13 Score=70.68 Aligned_cols=60 Identities=38% Similarity=0.484 Sum_probs=51.5
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCCCCh-hhhhcCCCCCccceEEeCCeeeecHHHHHHHHH
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTNKSD-LLLDYNPVHKKVPVLVYSGQSIAESLIILEYSD 68 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~-~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~ 68 (92)
++||+++.| +++|++|+.+.++...... ++.+.+|. +++|+|+.+|..+.||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL-GKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 478888776 8999999999998764333 58889998 999999999999999999999984
No 53
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.46 E-value=2.3e-13 Score=88.90 Aligned_cols=73 Identities=26% Similarity=0.408 Sum_probs=65.7
Q ss_pred eeEEEecCch----------hhcCCCceEEEccCC---CCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhcCC
Q 048672 7 EVVLFRHWPR----------KLKGKAYVYVGEDLT---NKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCWNN 73 (92)
Q Consensus 7 ~~~Ly~~~~s----------~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~~~ 73 (92)
.++||++|.| ++|||+|+...|++. +..+||..+||. |.||||++|..+|.|++-|++|+++.|.+
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~-gevPVl~~g~~II~d~tqIIdYvErtf~g 104 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPG-GEVPVLIHGDNIISDYTQIIDYVERTFTG 104 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCC-CCCceEecCCeecccHHHHHHHHHHhhcc
Confidence 4899999988 999999999999986 468999999999 99999999999999999999999999866
Q ss_pred CCCCCCC
Q 048672 74 TAKLLPE 80 (92)
Q Consensus 74 ~~~l~p~ 80 (92)
...|.|+
T Consensus 105 er~l~pe 111 (325)
T KOG4420|consen 105 ERVLMPE 111 (325)
T ss_pred ccccccc
Confidence 5447775
No 54
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.42 E-value=8.3e-13 Score=71.28 Aligned_cols=46 Identities=30% Similarity=0.406 Sum_probs=41.1
Q ss_pred hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhh
Q 048672 17 KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDC 70 (92)
Q Consensus 17 ~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~ 70 (92)
+++|++|+.+.++.. ..+|. |++|+|+++|.++.||.+|++||+++
T Consensus 27 ~~~~i~~~~~~~~~~-------~~~p~-g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 27 RMAGIPYEVVFSSNP-------WRSPT-GKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred HhCCCceEEEecCCc-------ccCCC-cccCEEEECCEEEcCHHHHHHHHhhC
Confidence 899999999988753 27898 99999999999999999999999864
No 55
>PLN02907 glutamate-tRNA ligase
Probab=99.32 E-value=6.8e-12 Score=92.18 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=62.6
Q ss_pred eEEEecCch---------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEE-eCCeeeecHHHHHHHHHhhcCCCCCC
Q 048672 8 VVLFRHWPR---------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLV-YSGQSIAESLIILEYSDDCWNNTAKL 77 (92)
Q Consensus 8 ~~Ly~~~~s---------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~eS~~I~~yL~~~~~~~~~l 77 (92)
++||+.+.| ++.|++|+.+. .+|. |+||+|+ ++|..|+||.||++||++.++... |
T Consensus 3 ~kLy~~~~S~~~~v~~~L~~lgv~~e~~~------------~~p~-GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~~-L 68 (722)
T PLN02907 3 AKLSFPPDSPPLAVIAAAKVAGVPLTIDP------------SLKS-GSAPTLLFSSGEKLTGTNVLLRYIARSASLPG-F 68 (722)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCcEEee------------cCCC-CCCcEEEECCCCEEECHHHHHHHHHHhCCCcC-C
Confidence 789999887 89999999763 2688 9999999 689999999999999999998777 9
Q ss_pred CCCCHHHHHhhhhC
Q 048672 78 LPEDPHQRTKLHLG 91 (92)
Q Consensus 78 ~p~~~~~~~~~~~~ 91 (92)
+|.++.++++++.|
T Consensus 69 ~p~d~~erAqV~qW 82 (722)
T PLN02907 69 YGQDAFESSQVDEW 82 (722)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999999887
No 56
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.22 E-value=5.2e-11 Score=64.93 Aligned_cols=56 Identities=18% Similarity=0.186 Sum_probs=42.9
Q ss_pred eEEE-ecCch-------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhh
Q 048672 8 VVLF-RHWPR-------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDC 70 (92)
Q Consensus 8 ~~Ly-~~~~s-------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~ 70 (92)
..|+ ..+.| ++.|+||+.+.+ .. . ...+|. |+||+|++||.+++||.+|+.||+++
T Consensus 11 ~~~~~~~~~~~kv~~~L~elglpye~~~~--~~--~--~~~~P~-GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 11 QILLPDNASCLAVQTFLKMCNLPFNVRCR--AN--A--EFMSPS-GKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred eeecCCCCCHHHHHHHHHHcCCCcEEEec--CC--c--cccCCC-CcccEEEECCEEEeCHHHHHHHHhcC
Confidence 4555 44555 999999998732 11 1 126787 99999999999999999999999763
No 57
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=98.94 E-value=5.9e-09 Score=66.43 Aligned_cols=58 Identities=28% Similarity=0.409 Sum_probs=55.5
Q ss_pred hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhcCCCC
Q 048672 17 KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCWNNTA 75 (92)
Q Consensus 17 ~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~~~~~ 75 (92)
.++|++|+...||...++++|+++.|. |++|+|..+|.+.+||..|-++|++.++.+.
T Consensus 32 ~~k~~~f~vttVd~~~kp~~f~~~sp~-~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~ 89 (221)
T KOG1422|consen 32 ELKGVPFKVTTVDLSRKPEWFLDISPG-GKPPVLKFDEKWVTDSDKIEEFLEEKLPPPK 89 (221)
T ss_pred HHcCCCceEEEeecCCCcHHHHhhCCC-CCCCeEEeCCceeccHHHHHHHHHHhcCCCC
Confidence 789999999999999999999999998 9999999999999999999999999998765
No 58
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=98.83 E-value=1.9e-08 Score=55.23 Aligned_cols=64 Identities=20% Similarity=0.183 Sum_probs=53.0
Q ss_pred CCCeeEEEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHH
Q 048672 4 QQSEVVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSD 68 (92)
Q Consensus 4 ~~~~~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~ 68 (92)
.+..++||+.+.| ...|++|+.+.++-.....++...++. ..+|++..+|..+..+..|.+||+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~-~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGA-TTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCC-CCcCeEEECCEEEcCHHHHHHHhC
Confidence 3457999999988 888999999887654434556667777 899999999999999999999984
No 59
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.73 E-value=7.7e-08 Score=52.23 Aligned_cols=46 Identities=28% Similarity=0.342 Sum_probs=37.3
Q ss_pred hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhh
Q 048672 17 KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDC 70 (92)
Q Consensus 17 ~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~ 70 (92)
+..|++|+.+...- ....|. |++|+|+++|..+.+|..|++||.++
T Consensus 27 r~~~~~~~v~~~~n-------~~~sp~-gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 27 KFAGAPLKVVPSNN-------PWRSPT-GKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred HcCCCCEEEEecCC-------CCCCCC-CccCEEEECCEEecChHHHHHHHHHc
Confidence 77899998663321 134687 99999999999999999999999864
No 60
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.1e-07 Score=58.34 Aligned_cols=65 Identities=22% Similarity=0.168 Sum_probs=48.2
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEE-eCCeeeecHHHHHHHHHhhcCCC
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLV-YSGQSIAESLIILEYSDDCWNNT 74 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~l~eS~~I~~yL~~~~~~~ 74 (92)
|+||-+..| ..+|||++.....-.+... -..+-.. .+||+|+ ++|..+.||..|+.|+++..+.+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~T-p~rmiG~-KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEET-PIRMIGQ-KQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccC-hhhhhcc-cccceEEccccccchhhhHHHHHHHHhcCch
Confidence 456665544 7899999987665543222 2234454 7899999 99999999999999999987654
No 61
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.48 E-value=1.1e-06 Score=47.17 Aligned_cols=61 Identities=20% Similarity=0.139 Sum_probs=49.2
Q ss_pred eeEEEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHH
Q 048672 7 EVVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSD 68 (92)
Q Consensus 7 ~~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~ 68 (92)
+++||+.+.| ...|++|+.+.++.......+....+. ..+|++..+|..+..+..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~-~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGA-MTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCC-CCcCeEEECCEEEeCHHHHHHHhC
Confidence 5889998888 888999998888754433445555676 789999999999999999999984
No 62
>PRK10638 glutaredoxin 3; Provisional
Probab=98.35 E-value=2.5e-06 Score=47.06 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=50.9
Q ss_pred eeEEEecCch----------hhcCCCceEEEccCCC-CChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHH
Q 048672 7 EVVLFRHWPR----------KLKGKAYVYVGEDLTN-KSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSD 68 (92)
Q Consensus 7 ~~~Ly~~~~s----------~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~ 68 (92)
.++||+.+.| +++|++|+.+.++... ..+++.+.++. .++|++..+|..+.....+..+-.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR-TTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHHHHH
Confidence 5899999888 8999999999887653 35678889998 999999999999998887776643
No 63
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=98.26 E-value=4.2e-06 Score=55.28 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=50.6
Q ss_pred CeeEEEecCch-----------------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHH
Q 048672 6 SEVVLFRHWPR-----------------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSD 68 (92)
Q Consensus 6 ~~~~Ly~~~~s-----------------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~ 68 (92)
+.+.||++++. +..+||||.+.-. +...+.. |++|.++-+|+.+.||..|...|.
T Consensus 44 D~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~-------~~~rSr~-G~lPFIELNGe~iaDS~~I~~~L~ 115 (281)
T KOG4244|consen 44 DTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCS-------LKRRSRN-GTLPFIELNGEHIADSDLIEDRLR 115 (281)
T ss_pred CeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceecccc-------ceeeccC-CCcceEEeCCeeccccHHHHHHHH
Confidence 45779998765 9999999977433 3244666 999999999999999999999999
Q ss_pred hhcCCCC
Q 048672 69 DCWNNTA 75 (92)
Q Consensus 69 ~~~~~~~ 75 (92)
+.+.-+.
T Consensus 116 ~hf~~~~ 122 (281)
T KOG4244|consen 116 KHFKIPD 122 (281)
T ss_pred HHcCCCC
Confidence 8886554
No 64
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.22 E-value=4e-06 Score=56.08 Aligned_cols=61 Identities=21% Similarity=0.396 Sum_probs=48.4
Q ss_pred eeEEEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhh
Q 048672 7 EVVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDC 70 (92)
Q Consensus 7 ~~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~ 70 (92)
.++||.+..| .+.||+|+.+.|++-.+.+.-. +- |.|||.|..+|+.+.||.+|+.-|+..
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~eIk~--Ss-ykKVPil~~~Geqm~dSsvIIs~laTy 160 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQEIKW--SS-YKKVPILLIRGEQMVDSSVIISLLATY 160 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhhccc--cc-cccccEEEeccceechhHHHHHHHHHH
Confidence 5889998766 8899999999999875433222 23 489999998788999999999888653
No 65
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.13 E-value=8.9e-06 Score=42.91 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=44.6
Q ss_pred eeEEEecCch----------hhcCCCceEEEccCCC-CChhhhhcCCCCCccceEEeCCeee--ecHHHHHHHH
Q 048672 7 EVVLFRHWPR----------KLKGKAYVYVGEDLTN-KSDLLLDYNPVHKKVPVLVYSGQSI--AESLIILEYS 67 (92)
Q Consensus 7 ~~~Ly~~~~s----------~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l--~eS~~I~~yL 67 (92)
+++||+.+.| ++.|++|..+.++-.. ..+++.+.++. ..+|+++.+|..+ .++..|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~-~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQ-RGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCC-CcccEEEECCEEEeeCCHHHHHHHh
Confidence 3788998777 7778888877665432 23457788898 8999999888877 6777777665
No 66
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.95 E-value=2.1e-05 Score=41.35 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=40.0
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCC-CChhhhhcCCCCCccceEEeCCeeeec
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTN-KSDLLLDYNPVHKKVPVLVYSGQSIAE 59 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~e 59 (92)
+++|+.+.| .++|++|+.+.++... ..+++.+.+|. +.+|+++.+|..+..
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i~~~~~~i~g 63 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY-RSVPVVVIGDEHLSG 63 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC-cccCEEEECCEEEec
Confidence 688988877 7789999988876542 24567788998 999999988876653
No 67
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.90 E-value=5.3e-05 Score=40.61 Aligned_cols=56 Identities=16% Similarity=0.256 Sum_probs=44.2
Q ss_pred eeEEEecCch----------hhcCCCceEEEccCCC-CChhhhhcCCCCCccceEEeCCeeeecHHHH
Q 048672 7 EVVLFRHWPR----------KLKGKAYVYVGEDLTN-KSDLLLDYNPVHKKVPVLVYSGQSIAESLII 63 (92)
Q Consensus 7 ~~~Ly~~~~s----------~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I 63 (92)
.++||+.+.| ..+|++|+.+.++-.. ..+++.+.++. ..+|++..+|..+.--...
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v~i~~~~iGg~~~~ 68 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS-SVVPQIFFNEKLVGGLTDL 68 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHH
Confidence 5889999888 8899999988776542 34578888998 8999999999887654443
No 68
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.90 E-value=3.7e-05 Score=42.44 Aligned_cols=50 Identities=12% Similarity=0.228 Sum_probs=37.0
Q ss_pred eeEEEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeee
Q 048672 7 EVVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSI 57 (92)
Q Consensus 7 ~~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l 57 (92)
+++||+.+.| .++||+|+.+.++-.....+....++. ..+|+++.++..+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i~~~~~ 61 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGF-RQLPVVIAGDLSW 61 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-CCcCEEEECCEEE
Confidence 5889999888 899999998888743322233345687 8999999877654
No 69
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.83 E-value=8.6e-05 Score=38.74 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=45.5
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCC-CChhhhhcCCCCCccceEEeCCeeeecHHHHHHH
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTN-KSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEY 66 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~y 66 (92)
+++|+.+.| ..++++|+.+.++-.. ...++.+.++. ..+|++..+|..+..+..|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~-~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGW-PTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEecHHHHHHh
Confidence 688998877 7888988877665432 24567778897 8999999999999998877653
No 70
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.69 E-value=0.00017 Score=38.47 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=41.5
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCCC-ChhhhhcC-CCCCccceEE-eCCeeeecH--HHHHHHH
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTNK-SDLLLDYN-PVHKKVPVLV-YSGQSIAES--LIILEYS 67 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~~-~~~~~~~~-p~~g~vP~L~-~~g~~l~eS--~~I~~yL 67 (92)
++||+.+.| ...|++|+.+.++-... ...+.+.+ +. ..+|+++ .+|..+.++ ..+..+|
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~-~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGN-MTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCC-ceeCEEEECCCeEecCCCHHHHHHHh
Confidence 688998877 78899998776654432 34555676 77 8999997 677877654 4555554
No 71
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.66 E-value=0.0002 Score=38.23 Aligned_cols=59 Identities=14% Similarity=0.136 Sum_probs=44.1
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCC-CChhhhhcCCCCC-ccceEEeCCeeeecHHHHHHHH
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTN-KSDLLLDYNPVHK-KVPVLVYSGQSIAESLIILEYS 67 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g-~vP~L~~~g~~l~eS~~I~~yL 67 (92)
++||+.+.| +.+|++|+.+.++... ...++.+..+. . .+|++..+|..+.....+.++-
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~-~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGG-RRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCC-CCccCEEEECCEEEeChHHHHHHH
Confidence 789998888 8889999988887541 12344444454 4 8999999999998888877664
No 72
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.45 E-value=0.00052 Score=37.12 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=45.7
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCC-CChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHH
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTN-KSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSD 68 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~ 68 (92)
+++|+.+.| +.+|++|+.+.++... ...++.+..+. ..+|++..+|..+.....+..+-.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~-~~vP~i~i~g~~igg~~~~~~~~~ 71 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR-RTVPQIFIGDVHVGGCDDLYALDR 71 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCC-CCcCEEEECCEEEcChHHHHHHHH
Confidence 478888877 8899999998887542 23456666666 789999999999988777766654
No 73
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.44 E-value=0.00029 Score=37.66 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=33.5
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCe
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQ 55 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~ 55 (92)
++||+.+.| .++|++|+.+.++-.....+.+...+. ..+|+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~-~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGF-RQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-cccCEEEECCC
Confidence 478888888 889999998888754322233334576 78999997654
No 74
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.25 E-value=0.00029 Score=36.25 Aligned_cols=49 Identities=27% Similarity=0.331 Sum_probs=37.9
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCC-CChhhhhcCCCCCccceEEeCCeee
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTN-KSDLLLDYNPVHKKVPVLVYSGQSI 57 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l 57 (92)
+++|+.+.| +.+|++|+.+.++... ..+++.+.... ..+|++..||..+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV-RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC-CccCEEEECCEEC
Confidence 478888888 8999999999888663 34556666566 7899999888754
No 75
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.13 E-value=0.0041 Score=33.53 Aligned_cols=61 Identities=21% Similarity=0.213 Sum_probs=47.3
Q ss_pred eEEEecCch----------hhcCCCceEEEccCCCCC----hhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHh
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLTNKS----DLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDD 69 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~----~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~ 69 (92)
+++|+.+.| ...+++|+.+.++..... ..+.+.+.. ..+|++..+|..+..+..+.++..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 678887777 888899998888876432 234466665 7899999999999999998888753
No 76
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0028 Score=34.76 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=38.9
Q ss_pred eeEEEecCch----------hhcCCCceEEEccCCC--CChhhh-hcCCCCCccceEEeCCeeee
Q 048672 7 EVVLFRHWPR----------KLKGKAYVYVGEDLTN--KSDLLL-DYNPVHKKVPVLVYSGQSIA 58 (92)
Q Consensus 7 ~~~Ly~~~~s----------~~~gi~~~~~~v~~~~--~~~~~~-~~~p~~g~vP~L~~~g~~l~ 58 (92)
++++|..+.| ..+|++|+.+.++... ...+.. ..++. ..+|++..||..+.
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I~i~~~~ig 65 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQIFIGGKHVG 65 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCC-CCcCEEEECCEEEe
Confidence 4788888877 8899999998887765 333444 45577 89999998887664
No 77
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.02 E-value=0.0046 Score=33.94 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=47.5
Q ss_pred eeEEEecCch----------hh-----cCCCceEEEccCCC-CChhhhhcCC--CCCccceEEeCCeeeecHHHHHHHHH
Q 048672 7 EVVLFRHWPR----------KL-----KGKAYVYVGEDLTN-KSDLLLDYNP--VHKKVPVLVYSGQSIAESLIILEYSD 68 (92)
Q Consensus 7 ~~~Ly~~~~s----------~~-----~gi~~~~~~v~~~~-~~~~~~~~~p--~~g~vP~L~~~g~~l~eS~~I~~yL~ 68 (92)
.+++|+.+.| .. .|++|+.+.++-.. ...++..... . ..+|++..+|..+.....|.+++.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~-~~vP~ifi~g~~igg~~~~~~~~~ 80 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPV-ETVPQIFVDQKHIGGCTDFEAYVK 80 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCC-CcCCEEEECCEEEcCHHHHHHHHH
Confidence 4889999888 33 78999987776432 1234444333 2 479999999999999999999998
Q ss_pred hhcC
Q 048672 69 DCWN 72 (92)
Q Consensus 69 ~~~~ 72 (92)
+.++
T Consensus 81 ~~~~ 84 (85)
T PRK11200 81 ENLG 84 (85)
T ss_pred Hhcc
Confidence 7754
No 78
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=96.90 E-value=0.0017 Score=35.04 Aligned_cols=43 Identities=23% Similarity=0.386 Sum_probs=33.6
Q ss_pred hhcCCC---ceEEEccCCCCChhhhhcCCCCCccceEEe-CCeeeecHHHHHHHH
Q 048672 17 KLKGKA---YVYVGEDLTNKSDLLLDYNPVHKKVPVLVY-SGQSIAESLIILEYS 67 (92)
Q Consensus 17 ~~~gi~---~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~-~g~~l~eS~~I~~yL 67 (92)
+..+.+ |+.+..+ .+ ...|. |++|+|.+ ++..+.+-..|++||
T Consensus 25 ~~~~~~~~~~~vv~s~----n~---~~Spt-g~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 25 KFAGAPEQQFKVVPSN----NP---WLSPT-GELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred HhCCCCCceEEEEEcC----CC---CcCCC-CCCCEEEECCCcEEECHHHHHHhh
Confidence 666777 6655443 11 36788 99999998 999999999999998
No 79
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.62 E-value=0.025 Score=32.21 Aligned_cols=60 Identities=15% Similarity=0.105 Sum_probs=45.0
Q ss_pred CeeEEEecCch----------hhcCCCceEEEccCCCCCh----hhhhcCCCCCccceEEeCCeeeecHHHHHHH
Q 048672 6 SEVVLFRHWPR----------KLKGKAYVYVGEDLTNKSD----LLLDYNPVHKKVPVLVYSGQSIAESLIILEY 66 (92)
Q Consensus 6 ~~~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~----~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~y 66 (92)
.++++|+.+.| ...|++|+.+.++...... .+.+.++. ..+|++..+|..+.-...+...
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeEEECCEEEcCHHHHHHH
Confidence 46999999888 7889999988887543222 34556676 7899999999888777665553
No 80
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=96.52 E-value=0.019 Score=31.74 Aligned_cols=65 Identities=11% Similarity=0.094 Sum_probs=44.0
Q ss_pred eEEEecCch----------hhc-----CCCceEEEccCCC-CChhhhhcCCC-CCccceEEeCCeeeecHHHHHHHHHhh
Q 048672 8 VVLFRHWPR----------KLK-----GKAYVYVGEDLTN-KSDLLLDYNPV-HKKVPVLVYSGQSIAESLIILEYSDDC 70 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~-----gi~~~~~~v~~~~-~~~~~~~~~p~-~g~vP~L~~~g~~l~eS~~I~~yL~~~ 70 (92)
+++|+.+.| ..+ +++|+.+.++-.. ...++.+.... ...||++..+|..+..+..|..++.+.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 578888777 333 5667776665322 12344444331 047999999999999999999999876
Q ss_pred cC
Q 048672 71 WN 72 (92)
Q Consensus 71 ~~ 72 (92)
+.
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 53
No 81
>PHA03050 glutaredoxin; Provisional
Probab=96.40 E-value=0.032 Score=32.32 Aligned_cols=59 Identities=20% Similarity=0.223 Sum_probs=44.5
Q ss_pred CeeEEEecCch----------hhcCC---CceEEEccCCCC----ChhhhhcCCCCCccceEEeCCeeeecHHHHHH
Q 048672 6 SEVVLFRHWPR----------KLKGK---AYVYVGEDLTNK----SDLLLDYNPVHKKVPVLVYSGQSIAESLIILE 65 (92)
Q Consensus 6 ~~~~Ly~~~~s----------~~~gi---~~~~~~v~~~~~----~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~ 65 (92)
+.+++|+.+.| ...|+ +|+.+.++-... ..++.+.+.. ..||.+..+|..+.-...+..
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEECCEEEeChHHHHH
Confidence 46899998887 77888 788888875322 3456777887 799999999988876665544
No 82
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.34 E-value=0.041 Score=29.53 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=43.4
Q ss_pred EEEecCch----------hhcCCC--ceEEEccCCCCCh----hhhhcCCCCCccceEEeCCeeeecHHHHHHHHHh
Q 048672 9 VLFRHWPR----------KLKGKA--YVYVGEDLTNKSD----LLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDD 69 (92)
Q Consensus 9 ~Ly~~~~s----------~~~gi~--~~~~~v~~~~~~~----~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~ 69 (92)
++|+.+.| ...+++ |+.+.++...... .+.+.... ..+|++..+|..+..+..+.+...+
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 56666666 667788 8888887653322 24455666 6899999999999999888877653
No 83
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=96.02 E-value=0.033 Score=30.97 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=37.2
Q ss_pred hhcCCCceEEEccCCC-CChhhhhcCCCCCccceEEeCCeeeecHHHHHHHH
Q 048672 17 KLKGKAYVYVGEDLTN-KSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYS 67 (92)
Q Consensus 17 ~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL 67 (92)
...|++|+.+.++-.. ...++.+.... ..+|++..+|..+.....+....
T Consensus 34 ~~~~i~y~~idv~~~~~~~~~l~~~~g~-~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 34 NQLGVDFGTFDILEDEEVRQGLKEYSNW-PTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred HHcCCCeEEEEcCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeCHHHHHHHH
Confidence 8889999988876432 13445566776 78999999999988887776643
No 84
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=95.47 E-value=0.059 Score=31.54 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=35.2
Q ss_pred ceEEEccCCCCChhhhh-cCCCCCccceEE-eCCe-------------eeecHHHHHHHHHhhcC
Q 048672 23 YVYVGEDLTNKSDLLLD-YNPVHKKVPVLV-YSGQ-------------SIAESLIILEYSDDCWN 72 (92)
Q Consensus 23 ~~~~~v~~~~~~~~~~~-~~p~~g~vP~L~-~~g~-------------~l~eS~~I~~yL~~~~~ 72 (92)
.+.+.|++........+ +..-+.-+|+|+ .+|. .|.++..|++||++.|+
T Consensus 44 ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~La~r~g 108 (112)
T PF11287_consen 44 LDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRYLAERHG 108 (112)
T ss_pred ccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHHHHHHcC
Confidence 55567777665555543 333225689999 5544 68899999999999986
No 85
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.13 E-value=0.14 Score=29.01 Aligned_cols=60 Identities=23% Similarity=0.284 Sum_probs=41.3
Q ss_pred CeeEEEec--------Cch-------hhcCCCceEEEccCCC-CChhhhhcCCCCCccceEEeCCeeeecHHHHHHH
Q 048672 6 SEVVLFRH--------WPR-------KLKGKAYVYVGEDLTN-KSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEY 66 (92)
Q Consensus 6 ~~~~Ly~~--------~~s-------~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~y 66 (92)
.++.+|.. |.| ..+|++|+.+.++-.. ...++.+.+.. ..+|.+..+|..+.-...+...
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi~g~~iGG~ddl~~l 87 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYVKGEFVGGCDIIMEM 87 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeChHHHHHH
Confidence 46888853 444 8899999987764221 12344566776 7899999999988776665554
No 86
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.16 Score=27.80 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=34.7
Q ss_pred eeEEEecCch----------hhcCCCceEEEccCC-----------CCChhhhh--cCCCCCccceEE-eCCeeee
Q 048672 7 EVVLFRHWPR----------KLKGKAYVYVGEDLT-----------NKSDLLLD--YNPVHKKVPVLV-YSGQSIA 58 (92)
Q Consensus 7 ~~~Ly~~~~s----------~~~gi~~~~~~v~~~-----------~~~~~~~~--~~p~~g~vP~L~-~~g~~l~ 58 (92)
+.+||+.-.| +..+++|+.+.+.-. +..++|.+ .|.. -.||+|. +||.++.
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gy-iGIPall~~d~~vVl 77 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGY-IGIPALLTDDGKVVL 77 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCc-ccceEEEeCCCcEEE
Confidence 3589988777 677888888777432 34567764 4443 4689998 7777665
No 87
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.94 E-value=0.15 Score=33.23 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=44.0
Q ss_pred eEEEecCch-------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhc
Q 048672 8 VVLFRHWPR-------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCW 71 (92)
Q Consensus 8 ~~Ly~~~~s-------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~ 71 (92)
+-|+.+..| +..++||..+.-+ ..+| ++|. |++|.|..|...+.|=.+|+.++..+-
T Consensus 29 iLl~d~ascLAVqtfLrMcnLPf~v~~~~----Naef--mSP~-G~vPllr~g~~~~aef~pIV~fVeak~ 92 (257)
T KOG3027|consen 29 ILLPDNASCLAVQTFLRMCNLPFNVRQRA----NAEF--MSPG-GKVPLLRIGKTLFAEFEPIVDFVEAKG 92 (257)
T ss_pred cccccchhHHHHHHHHHHcCCCceeeecC----Cccc--cCCC-CCCceeeecchhhhhhhHHHHHHHHhc
Confidence 445555555 8899999976432 3344 4898 999999999999999999999998764
No 88
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=93.68 E-value=0.21 Score=35.35 Aligned_cols=58 Identities=12% Similarity=0.142 Sum_probs=39.8
Q ss_pred eeEEEecCch----------hhcCCCceEEEccCCCCChhhh-h--------cCCCCCccceEEeCCeeeecHHHHHH
Q 048672 7 EVVLFRHWPR----------KLKGKAYVYVGEDLTNKSDLLL-D--------YNPVHKKVPVLVYSGQSIAESLIILE 65 (92)
Q Consensus 7 ~~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~~~~~-~--------~~p~~g~vP~L~~~g~~l~eS~~I~~ 65 (92)
.+++|+.+.| ..+||+|+.+.|+-.....++. + ..+. ..||++..||..+.--..+..
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEECCEEEeCchHHHH
Confidence 4889998888 8899999988887332222322 2 2355 689999988887765544433
No 89
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=93.11 E-value=0.6 Score=25.33 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=30.0
Q ss_pred eeEEEecCch----------h--hcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCC
Q 048672 7 EVVLFRHWPR----------K--LKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSG 54 (92)
Q Consensus 7 ~~~Ly~~~~s----------~--~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g 54 (92)
+++||+-+.| + ....+|+...||+.. .+++.+... ..||||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~-d~~l~~~Y~--~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE-DPELFEKYG--YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT-THHHHHHSC--TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC-CHHHHHHhc--CCCCEEEEcC
Confidence 3789999998 2 233457777777764 455666666 3799999766
No 90
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=92.31 E-value=0.13 Score=30.60 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=15.2
Q ss_pred cCCCCCccceEE--eCCeeeecHHHHHHHHHhhcCC
Q 048672 40 YNPVHKKVPVLV--YSGQSIAESLIILEYSDDCWNN 73 (92)
Q Consensus 40 ~~p~~g~vP~L~--~~g~~l~eS~~I~~yL~~~~~~ 73 (92)
.|.- ...|-|. -+|+.|+|+.||++||..-|.+
T Consensus 30 v~ed-~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 30 VNED-ESGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp E-SS---S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred eCCc-cccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 3443 4457784 5789999999999999987753
No 91
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=89.22 E-value=0.95 Score=26.63 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=20.0
Q ss_pred eeEEEecCch----------hhcCCCceEEEcc
Q 048672 7 EVVLFRHWPR----------KLKGKAYVYVGED 29 (92)
Q Consensus 7 ~~~Ly~~~~s----------~~~gi~~~~~~v~ 29 (92)
++++|+.|.| +..|++|+.+.+-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 5899999999 9999999977654
No 92
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=88.71 E-value=2.5 Score=25.89 Aligned_cols=49 Identities=8% Similarity=0.056 Sum_probs=33.7
Q ss_pred hhcCCCceEEEccCCC-CChhhhhcCC----CCCccceEEeCCeeeecHHHHHHH
Q 048672 17 KLKGKAYVYVGEDLTN-KSDLLLDYNP----VHKKVPVLVYSGQSIAESLIILEY 66 (92)
Q Consensus 17 ~~~gi~~~~~~v~~~~-~~~~~~~~~p----~~g~vP~L~~~g~~l~eS~~I~~y 66 (92)
+.++|+|+.+.|+... ..+++.+... . ..+|.+..+|..+-....+.+.
T Consensus 27 ~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~-~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 27 ESFRVKFDERDVSMDSGFREELRELLGAELKA-VSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred HHCCCcEEEEECCCCHHHHHHHHHHhCCCCCC-CCCCEEEECCEEEecHHHHHHH
Confidence 7889999988887542 2334444322 2 5799999999988777666653
No 93
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=88.51 E-value=2.4 Score=22.29 Aligned_cols=47 Identities=19% Similarity=0.136 Sum_probs=30.1
Q ss_pred eeEEEecCch--------------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCe
Q 048672 7 EVVLFRHWPR--------------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQ 55 (92)
Q Consensus 7 ~~~Ly~~~~s--------------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~ 55 (92)
+++||+.+.| ++.+..+....||... .++..+.... ..+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME-NPQKAMEYGI-MAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc-CHHHHHHcCC-ccCCEEEECCE
Confidence 3678888777 2334446666777654 3344455565 67999997775
No 94
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=87.87 E-value=2.4 Score=21.57 Aligned_cols=48 Identities=19% Similarity=0.140 Sum_probs=28.8
Q ss_pred eeEEEecCch----------h---h--cCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeee
Q 048672 7 EVVLFRHWPR----------K---L--KGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIA 58 (92)
Q Consensus 7 ~~~Ly~~~~s----------~---~--~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~ 58 (92)
++++|+.+.| . . .++.|..+ |... .+++.+.... ..+|++..+|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~i--d~~~-~~~l~~~~~i-~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMI--DAAE-FPDLADEYGV-MSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEE--Eccc-CHhHHHHcCC-cccCEEEECCEEEE
Confidence 3678877777 1 1 13555444 4332 3445556665 67999998887654
No 95
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=87.73 E-value=1.3 Score=26.30 Aligned_cols=23 Identities=9% Similarity=0.034 Sum_probs=19.9
Q ss_pred eeEEEecCch----------hhcCCCceEEEcc
Q 048672 7 EVVLFRHWPR----------KLKGKAYVYVGED 29 (92)
Q Consensus 7 ~~~Ly~~~~s----------~~~gi~~~~~~v~ 29 (92)
.++||+.|.| .++|++|+.+.+-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 5899999999 8889999988764
No 96
>PRK10026 arsenate reductase; Provisional
Probab=87.67 E-value=0.77 Score=27.96 Aligned_cols=22 Identities=5% Similarity=0.131 Sum_probs=19.4
Q ss_pred eeEEEecCch----------hhcCCCceEEEc
Q 048672 7 EVVLFRHWPR----------KLKGKAYVYVGE 28 (92)
Q Consensus 7 ~~~Ly~~~~s----------~~~gi~~~~~~v 28 (92)
++++|+.|.| .++|++|+.+.+
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~ 34 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTEPTIIHY 34 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEee
Confidence 5899999999 788999998776
No 97
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=87.57 E-value=0.64 Score=27.10 Aligned_cols=23 Identities=4% Similarity=-0.024 Sum_probs=19.7
Q ss_pred eEEEecCch----------hhcCCCceEEEccC
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDL 30 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~ 30 (92)
++||+.|.| .++|++|+.+.+--
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehhc
Confidence 789999999 88899999887643
No 98
>PRK10853 putative reductase; Provisional
Probab=86.72 E-value=0.7 Score=27.15 Aligned_cols=22 Identities=18% Similarity=0.220 Sum_probs=19.0
Q ss_pred eEEEecCch----------hhcCCCceEEEcc
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGED 29 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~ 29 (92)
+++|+.+.| +++|++|+.+.+-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 789999999 8889999987664
No 99
>PRK12559 transcriptional regulator Spx; Provisional
Probab=86.29 E-value=1.5 Score=26.26 Aligned_cols=24 Identities=17% Similarity=0.036 Sum_probs=20.3
Q ss_pred eEEEecCch----------hhcCCCceEEEccCC
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLT 31 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~ 31 (92)
+++|+.+.| ..+|++|+.+.+.-.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~ 35 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSN 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCC
Confidence 789999999 888999998877543
No 100
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=86.06 E-value=4.4 Score=22.76 Aligned_cols=48 Identities=8% Similarity=0.073 Sum_probs=32.7
Q ss_pred hhcCCCceEEEccCCCC-ChhhhhcC----CCCCccceEEeCCeeeecHHHHHH
Q 048672 17 KLKGKAYVYVGEDLTNK-SDLLLDYN----PVHKKVPVLVYSGQSIAESLIILE 65 (92)
Q Consensus 17 ~~~gi~~~~~~v~~~~~-~~~~~~~~----p~~g~vP~L~~~g~~l~eS~~I~~ 65 (92)
..+||+|+.+.|+.... ..+..+.. +. ..+|-+..++..+-....+..
T Consensus 27 ~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~-~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 27 EAKKIEFEEVDISMNEENRQWMRENVPNENGK-PLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred HHCCCceEEEecCCCHHHHHHHHHhcCCCCCC-CCCCEEEECCEEeeCHHHHHH
Confidence 78899999988876422 23444432 33 578988889988887755544
No 101
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=85.83 E-value=1.7 Score=26.01 Aligned_cols=24 Identities=4% Similarity=-0.033 Sum_probs=20.3
Q ss_pred eEEEecCch----------hhcCCCceEEEccCC
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLT 31 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~ 31 (92)
+++|+.+.| ..+|++|+.+.+.-.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~ 35 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKE 35 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCC
Confidence 789999999 888999999887543
No 102
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=85.27 E-value=1.6 Score=25.23 Aligned_cols=23 Identities=4% Similarity=-0.156 Sum_probs=19.7
Q ss_pred eEEEecCch----------hhcCCCceEEEccC
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDL 30 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~ 30 (92)
+++|+.+.| ..+|++|+.+.+.-
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFK 34 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCC
Confidence 789999999 88899999887743
No 103
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=85.21 E-value=1.1 Score=26.79 Aligned_cols=23 Identities=13% Similarity=-0.055 Sum_probs=19.8
Q ss_pred eEEEecCch----------hhcCCCceEEEccC
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDL 30 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~ 30 (92)
++||+.+.| ..+|++|+.+.+.-
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~ 34 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccC
Confidence 789999999 88899999887753
No 104
>PRK10824 glutaredoxin-4; Provisional
Probab=83.91 E-value=6.2 Score=23.14 Aligned_cols=49 Identities=20% Similarity=0.252 Sum_probs=35.1
Q ss_pred hhcCCCceEEEccCCC-CChhhhhcCCCCCccceEEeCCeeeecHHHHHHH
Q 048672 17 KLKGKAYVYVGEDLTN-KSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEY 66 (92)
Q Consensus 17 ~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~y 66 (92)
...|++|+.+.++-.. -...+.+.+.. ..||.+..+|..+--+..+...
T Consensus 41 ~~~~i~~~~idi~~d~~~~~~l~~~sg~-~TVPQIFI~G~~IGG~ddl~~l 90 (115)
T PRK10824 41 SACGERFAYVDILQNPDIRAELPKYANW-PTFPQLWVDGELVGGCDIVIEM 90 (115)
T ss_pred HHcCCCceEEEecCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHH
Confidence 6788999877665431 23345566676 7899999999988877666654
No 105
>PTZ00062 glutaredoxin; Provisional
Probab=83.26 E-value=5.6 Score=25.68 Aligned_cols=49 Identities=22% Similarity=0.137 Sum_probs=34.6
Q ss_pred hhcCCCceEEEccCCC-CChhhhhcCCCCCccceEEeCCeeeecHHHHHHH
Q 048672 17 KLKGKAYVYVGEDLTN-KSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEY 66 (92)
Q Consensus 17 ~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~y 66 (92)
+..|++|+...++-.. ....+.+.+.. ..+|.+..+|..+.-...+.+.
T Consensus 139 ~~~~i~y~~~DI~~d~~~~~~l~~~sg~-~TvPqVfI~G~~IGG~d~l~~l 188 (204)
T PTZ00062 139 NSSGVKYETYNIFEDPDLREELKVYSNW-PTYPQLYVNGELIGGHDIIKEL 188 (204)
T ss_pred HHcCCCEEEEEcCCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHH
Confidence 7789999977665332 12344566666 6899999999988877766653
No 106
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=83.16 E-value=2.3 Score=24.32 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=19.8
Q ss_pred eEEEecCch----------hhcCCCceEEEccCC
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLT 31 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~ 31 (92)
+++|+.|.| .++|++|+.+.+.-.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~ 34 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKD 34 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccC
Confidence 579999999 888999998877543
No 107
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=82.68 E-value=1.4 Score=24.89 Aligned_cols=23 Identities=9% Similarity=0.176 Sum_probs=19.4
Q ss_pred eEEEecCch----------hhcCCCceEEEccC
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDL 30 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~ 30 (92)
++||+.+.| ..+|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLK 33 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeecc
Confidence 479999988 88899999888754
No 108
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=82.63 E-value=1.3 Score=25.57 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=19.8
Q ss_pred eEEEecCch----------hhcCCCceEEEccCC
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDLT 31 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~~ 31 (92)
++||+.+.| ..+|++|+.+.+.-.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~ 34 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEE 34 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCC
Confidence 579999988 888999998877543
No 109
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=81.14 E-value=1.7 Score=25.15 Aligned_cols=22 Identities=9% Similarity=-0.037 Sum_probs=18.3
Q ss_pred eEEEecCch----------hhcCCCceEEEcc
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGED 29 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~ 29 (92)
++||+.+.| .++|++|+.+.+-
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 579999999 7889999987653
No 110
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=76.73 E-value=2.7 Score=24.35 Aligned_cols=22 Identities=18% Similarity=-0.007 Sum_probs=18.2
Q ss_pred eEEEecCch----------hhcCCCceEEEcc
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGED 29 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~ 29 (92)
++||+.+.| ...|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 579999999 7789999977654
No 111
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=76.60 E-value=9.3 Score=20.22 Aligned_cols=37 Identities=14% Similarity=0.197 Sum_probs=24.0
Q ss_pred hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeee
Q 048672 17 KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIA 58 (92)
Q Consensus 17 ~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~ 58 (92)
++.|..++.+.++ + .++..+ ... ..+|++..+|..+.
T Consensus 25 ~e~~~~~~~~~v~--~-~~~a~~-~~v-~~vPti~i~G~~~~ 61 (76)
T TIGR00412 25 EELGIDAEFEKVT--D-MNEILE-AGV-TATPGVAVDGELVI 61 (76)
T ss_pred HHcCCCeEEEEeC--C-HHHHHH-cCC-CcCCEEEECCEEEE
Confidence 6677888887776 1 222223 344 57999998886654
No 112
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=75.09 E-value=4.4 Score=23.48 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=20.5
Q ss_pred cceEE-eCCeeeecHHHHHHHHHhhc
Q 048672 47 VPVLV-YSGQSIAESLIILEYSDDCW 71 (92)
Q Consensus 47 vP~L~-~~g~~l~eS~~I~~yL~~~~ 71 (92)
+|.+. .+|...++|..|+++....|
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H 27 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRH 27 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcch
Confidence 35554 89999999999999988766
No 113
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=74.13 E-value=3.6 Score=23.82 Aligned_cols=23 Identities=9% Similarity=0.197 Sum_probs=18.8
Q ss_pred eEEEecCch----------hhcCCCceEEEccC
Q 048672 8 VVLFRHWPR----------KLKGKAYVYVGEDL 30 (92)
Q Consensus 8 ~~Ly~~~~s----------~~~gi~~~~~~v~~ 30 (92)
++||+.+.| ..+|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGE 33 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCC
Confidence 478999988 88899999887743
No 114
>PHA02125 thioredoxin-like protein
Probab=71.15 E-value=13 Score=19.47 Aligned_cols=45 Identities=24% Similarity=0.297 Sum_probs=29.3
Q ss_pred eEEEecCch--------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCe
Q 048672 8 VVLFRHWPR--------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQ 55 (92)
Q Consensus 8 ~~Ly~~~~s--------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~ 55 (92)
+.+|+.+.| ...++.++...||... ..++.+.+.. ..+|++. +|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~~~~~~vd~~~-~~~l~~~~~v-~~~PT~~-~g~ 54 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVEYTYVDVDTDE-GVELTAKHHI-RSLPTLV-NTS 54 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHhheEEeeeCCC-CHHHHHHcCC-ceeCeEE-CCE
Confidence 567777766 3445667766666433 4566667776 7899998 443
No 115
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=68.86 E-value=17 Score=19.96 Aligned_cols=48 Identities=10% Similarity=0.089 Sum_probs=29.1
Q ss_pred eeEEEecCch--------------hhc-CCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeee
Q 048672 7 EVVLFRHWPR--------------KLK-GKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIA 58 (92)
Q Consensus 7 ~~~Ly~~~~s--------------~~~-gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~ 58 (92)
.+.+|..+.| ++. ++.+..+ +... .++..+.... ..+|+++.+|....
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~v--d~~~-~~e~a~~~~V-~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMI--DGAL-FQDEVEERGI-MSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEE--EhHh-CHHHHHHcCC-ccCCEEEECCEEEE
Confidence 4678887777 333 3555544 4333 3445555565 68999998776554
No 116
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=68.32 E-value=11 Score=17.48 Aligned_cols=24 Identities=13% Similarity=0.083 Sum_probs=20.3
Q ss_pred CccceEEeCCeeeecHHHHHHHHH
Q 048672 45 KKVPVLVYSGQSIAESLIILEYSD 68 (92)
Q Consensus 45 g~vP~L~~~g~~l~eS~~I~~yL~ 68 (92)
|.+|....++..+.....|.+|++
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 25 GELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred CCCCeEEeCCeEEEeHHHHHHHHh
Confidence 778887778888999999998875
No 117
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=62.61 E-value=28 Score=20.06 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=41.9
Q ss_pred CeeEEEecCch----------hhcCCCceEEEccCCCCC----hhhhhcCCCCCccceEEeCCeeeecHHHHHHH
Q 048672 6 SEVVLFRHWPR----------KLKGKAYVYVGEDLTNKS----DLLLDYNPVHKKVPVLVYSGQSIAESLIILEY 66 (92)
Q Consensus 6 ~~~~Ly~~~~s----------~~~gi~~~~~~v~~~~~~----~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~y 66 (92)
+++.+|.-..| ...++++..+.+|..... ..+.+.... ..+|.+..+|..+--+..+..+
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~-~tvP~vFI~Gk~iGG~~dl~~l 87 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ-RTVPNVFIGGKFIGGASDLMAL 87 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC-CCCCEEEECCEEEcCHHHHHHH
Confidence 45777776555 557888888888776433 334456666 6899999999988766665544
No 118
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.95 E-value=31 Score=23.95 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=25.2
Q ss_pred CCCCCccceEE-eCCeeeecHHHHHHHHHhh
Q 048672 41 NPVHKKVPVLV-YSGQSIAESLIILEYSDDC 70 (92)
Q Consensus 41 ~p~~g~vP~L~-~~g~~l~eS~~I~~yL~~~ 70 (92)
.|. |++|+|+ ++|..+..-.-|+.+|..+
T Consensus 45 s~s-g~LP~l~~~ng~~va~~~~iv~~L~k~ 74 (313)
T KOG3028|consen 45 SPS-GKLPYLITDNGTKVAGPVKIVQFLKKN 74 (313)
T ss_pred CCC-CCCCeEEecCCceeccHHHHHHHHHHh
Confidence 566 8999999 6679999999999999874
No 119
>PF12728 HTH_17: Helix-turn-helix domain
Probab=55.81 E-value=23 Score=16.96 Aligned_cols=26 Identities=8% Similarity=0.004 Sum_probs=22.3
Q ss_pred CccceEEeCCeeeecHHHHHHHHHhh
Q 048672 45 KKVPVLVYSGQSIAESLIILEYSDDC 70 (92)
Q Consensus 45 g~vP~L~~~g~~l~eS~~I~~yL~~~ 70 (92)
|.+|....++.....-..|.+|+.++
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 25 GKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred CCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 78888888888999999999999763
No 120
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=55.71 E-value=29 Score=18.19 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=24.1
Q ss_pred hhcCCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeecH
Q 048672 17 KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAES 60 (92)
Q Consensus 17 ~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~eS 60 (92)
...|+.++.+.+ ...++. ..... ..+|+++.||...+..
T Consensus 25 ~~~~i~~ei~~~---~~~~~~-~~ygv-~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 25 EELGIEVEIIDI---EDFEEI-EKYGV-MSVPALVINGKVVFVG 63 (76)
T ss_dssp HHTTEEEEEEET---TTHHHH-HHTT--SSSSEEEETTEEEEES
T ss_pred HhcCCeEEEEEc---cCHHHH-HHcCC-CCCCEEEECCEEEEEe
Confidence 455666665544 223334 56666 7899999888876554
No 121
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=53.78 E-value=16 Score=19.34 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.7
Q ss_pred cceEEeCCeeeecHHHHHHHHHh
Q 048672 47 VPVLVYSGQSIAESLIILEYSDD 69 (92)
Q Consensus 47 vP~L~~~g~~l~eS~~I~~yL~~ 69 (92)
=||+..+| ..+|-.+|.+||.+
T Consensus 16 dPVi~~~G-~tyer~~I~~~l~~ 37 (73)
T PF04564_consen 16 DPVILPSG-HTYERSAIERWLEQ 37 (73)
T ss_dssp SEEEETTS-EEEEHHHHHHHHCT
T ss_pred CceeCCcC-CEEcHHHHHHHHHc
Confidence 48988888 89999999999988
No 122
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=53.09 E-value=12 Score=23.77 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=20.2
Q ss_pred CeeeecHHHHHHHHHhhcC-CCCCCCC
Q 048672 54 GQSIAESLIILEYSDDCWN-NTAKLLP 79 (92)
Q Consensus 54 g~~l~eS~~I~~yL~~~~~-~~~~l~p 79 (92)
+..+.||..|-+|+.+.|+ ....+.|
T Consensus 155 d~lIaDs~~I~~y~~~~y~~~~s~~Ia 181 (185)
T PF09314_consen 155 DRLIADSKGIQDYIKERYGRKKSTFIA 181 (185)
T ss_pred CEEEEcCHHHHHHHHHHcCCCCcEEec
Confidence 5579999999999999998 4433444
No 123
>PRK09266 hypothetical protein; Provisional
Probab=47.53 E-value=20 Score=23.66 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=38.2
Q ss_pred hhcCCCceEEEccCCC--CChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhcC
Q 048672 17 KLKGKAYVYVGEDLTN--KSDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCWN 72 (92)
Q Consensus 17 ~~~gi~~~~~~v~~~~--~~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~~ 72 (92)
+..|+++++..+.+.+ ..++..-.|...|-+||-..++..+.+...+.+.|.+.|.
T Consensus 202 ~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 202 ERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 5668888888887653 2333333444438899999888877655678787777663
No 124
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=47.25 E-value=30 Score=23.71 Aligned_cols=23 Identities=30% Similarity=0.166 Sum_probs=18.2
Q ss_pred ccceEEeCC---eeeecHHHHHHHHH
Q 048672 46 KVPVLVYSG---QSIAESLIILEYSD 68 (92)
Q Consensus 46 ~vP~L~~~g---~~l~eS~~I~~yL~ 68 (92)
.||||.|-. .+=.||..|++.+.
T Consensus 123 TVPVLWD~k~ktIVnNES~eIIr~fN 148 (319)
T KOG2903|consen 123 TVPVLWDLKTKTIVNNESSEIIRMFN 148 (319)
T ss_pred EEEEEEccccceeecCchHHHHHHHh
Confidence 599999643 23469999999998
No 125
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=42.09 E-value=18 Score=20.04 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=16.9
Q ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHhhhhCC
Q 048672 61 LIILEYSDDCWNNTAKLLPEDPHQRTKLHLGK 92 (92)
Q Consensus 61 ~~I~~yL~~~~~~~~~l~p~~~~~~~~~~~~~ 92 (92)
.-|-.||++. .-|.++.+|....+|+
T Consensus 36 ~~iGdyLA~~------vdP~N~EerlLkELW~ 61 (81)
T PF11588_consen 36 YQIGDYLAKN------VDPKNPEERLLKELWD 61 (81)
T ss_dssp HHHHHHHHT-----------SHHHHHHHHHHH
T ss_pred HHHHHHHHhc------CCCCCHHHHHHHHHHH
Confidence 3567788765 5677899999999884
No 126
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=39.34 E-value=11 Score=22.74 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=21.8
Q ss_pred ChhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhc
Q 048672 34 SDLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCW 71 (92)
Q Consensus 34 ~~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~ 71 (92)
..++.-..|- -||+|+.|..+=-|+..|++||....
T Consensus 78 sae~i~pYPP--GIPll~pGE~it~~~~~~i~yl~~l~ 113 (136)
T PF03711_consen 78 SAEFIVPYPP--GIPLLVPGERITEETEEIIDYLLALQ 113 (136)
T ss_dssp BSS-BEECTT--TS-SB-TTEEB-STTHHHHHHHHHHH
T ss_pred EEeeeeecCC--CCcEECCccccccchHHHHHHHHHHH
Confidence 4556666774 49988855444356889999997643
No 127
>TIGR03412 iscX_yfhJ FeS assembly protein IscX. Members of this protein family are YfhJ, a protein of the ISC system for iron-sulfur cluster assembly. Other genes in the system include iscSUA, hscBA, and fdx.
Probab=37.81 E-value=36 Score=17.91 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=14.3
Q ss_pred ecHHHHHHHHHhhcCC
Q 048672 58 AESLIILEYSDDCWNN 73 (92)
Q Consensus 58 ~eS~~I~~yL~~~~~~ 73 (92)
.+|..|+.-|.++||+
T Consensus 3 ~D~~eIA~~L~e~~pd 18 (63)
T TIGR03412 3 TDSQEIAIALAEAHPD 18 (63)
T ss_pred cCHHHHHHHHHHHCCC
Confidence 5889999999999986
No 128
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=37.63 E-value=1.2e+02 Score=22.48 Aligned_cols=49 Identities=14% Similarity=0.045 Sum_probs=31.9
Q ss_pred eeEEEecCch--------------hhc-CCCceEEEccCCCCChhhhhcCCCCCccceEEeCCeeeec
Q 048672 7 EVVLFRHWPR--------------KLK-GKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLVYSGQSIAE 59 (92)
Q Consensus 7 ~~~Ly~~~~s--------------~~~-gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~l~e 59 (92)
.+++|..+.| .+. +|..+.+.+.. .+++.+.... ..+|+++.+|..+.+
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~---~~~~~~~~~v-~~vP~~~i~~~~~~~ 542 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH---FPDLKDEYGI-MSVPAIVVDDQQVYF 542 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc---cHHHHHhCCc-eecCEEEECCEEEEe
Confidence 4778777777 444 57666655543 2456656665 689999988876544
No 129
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=35.20 E-value=89 Score=17.79 Aligned_cols=58 Identities=7% Similarity=0.007 Sum_probs=29.7
Q ss_pred eEEEecCch----------------hhcCCCceEEEccCCCCCh-hhhhcC---------CCCCccceEEeCCeeeecHH
Q 048672 8 VVLFRHWPR----------------KLKGKAYVYVGEDLTNKSD-LLLDYN---------PVHKKVPVLVYSGQSIAESL 61 (92)
Q Consensus 8 ~~Ly~~~~s----------------~~~gi~~~~~~v~~~~~~~-~~~~~~---------p~~g~vP~L~~~g~~l~eS~ 61 (92)
+++|..-.+ ..++|+|+.+.|....... +..+.. +. .-.|-+..|+..+.+=-
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~-~lpPqiF~~~~Y~Gdye 81 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGK-PLPPQIFNGDEYCGDYE 81 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT---S-EEEETTEEEEEHH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCC-CCCCEEEeCCEEEeeHH
Confidence 678876655 8899999977665432222 223222 22 23468888888776655
Q ss_pred HHHHH
Q 048672 62 IILEY 66 (92)
Q Consensus 62 ~I~~y 66 (92)
.+-+.
T Consensus 82 ~f~ea 86 (99)
T PF04908_consen 82 DFEEA 86 (99)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 130
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=35.18 E-value=32 Score=19.48 Aligned_cols=19 Identities=11% Similarity=0.228 Sum_probs=11.6
Q ss_pred EecCch----------hhcCCCceEEEcc
Q 048672 11 FRHWPR----------KLKGKAYVYVGED 29 (92)
Q Consensus 11 y~~~~s----------~~~gi~~~~~~v~ 29 (92)
|+.+.| ++.|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 677777 8889999977664
No 131
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.94 E-value=98 Score=18.61 Aligned_cols=52 Identities=17% Similarity=0.164 Sum_probs=31.4
Q ss_pred hhcCCCceEEEccCCCCChhhhhcCCCCC-------ccceEE-eC--CeeeecHHHHHHHHHh
Q 048672 17 KLKGKAYVYVGEDLTNKSDLLLDYNPVHK-------KVPVLV-YS--GQSIAESLIILEYSDD 69 (92)
Q Consensus 17 ~~~gi~~~~~~v~~~~~~~~~~~~~p~~g-------~vP~L~-~~--g~~l~eS~~I~~yL~~ 69 (92)
++.......+.|+..+++-|-...||+ . -||+|. .+ +..+.+...-...|.+
T Consensus 60 k~ap~~~~~v~v~VG~rp~Wk~p~n~F-R~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 60 KHAPEDVHFVHVYVGNRPYWKDPANPF-RKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred HhCCCceEEEEEEecCCCcccCCCCcc-ccCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 445555666777666554444444443 3 379988 44 4567777776666654
No 132
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=34.75 E-value=51 Score=14.85 Aligned_cols=12 Identities=42% Similarity=0.426 Sum_probs=9.4
Q ss_pred hcCCCCCccceEE
Q 048672 39 DYNPVHKKVPVLV 51 (92)
Q Consensus 39 ~~~p~~g~vP~L~ 51 (92)
..++. ..+|+++
T Consensus 47 ~~~~~-~~~P~~~ 58 (69)
T cd01659 47 KRYGV-GGVPTLV 58 (69)
T ss_pred HhCCC-ccccEEE
Confidence 46676 8999988
No 133
>PRK10721 hypothetical protein; Provisional
Probab=34.33 E-value=44 Score=17.74 Aligned_cols=17 Identities=24% Similarity=0.110 Sum_probs=14.9
Q ss_pred eecHHHHHHHHHhhcCC
Q 048672 57 IAESLIILEYSDDCWNN 73 (92)
Q Consensus 57 l~eS~~I~~yL~~~~~~ 73 (92)
-++|..|+.-|.++||+
T Consensus 5 W~D~~dIA~~L~e~~Pd 21 (66)
T PRK10721 5 WTDSREIGEALYDAYPD 21 (66)
T ss_pred ccCHHHHHHHHHHHCCC
Confidence 46899999999999986
No 134
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.54 E-value=61 Score=22.41 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=25.5
Q ss_pred ccceEEeCC--eee-ecHHHHHHHHHhhcC-----CCCCCCCCCHHH
Q 048672 46 KVPVLVYSG--QSI-AESLIILEYSDDCWN-----NTAKLLPEDPHQ 84 (92)
Q Consensus 46 ~vP~L~~~g--~~l-~eS~~I~~yL~~~~~-----~~~~l~p~~~~~ 84 (92)
.||||.+.. .++ .||..|++-+...|. ... |+|....+
T Consensus 129 TVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~d-lyP~~Lr~ 174 (324)
T COG0435 129 TVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVD-LYPEALRT 174 (324)
T ss_pred eEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccc-cCCHHHHH
Confidence 689999543 333 599999998876653 234 88864443
No 135
>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1.4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.
Probab=32.20 E-value=34 Score=21.56 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=11.6
Q ss_pred Ceeee--cHHHHHHHHHhhcC
Q 048672 54 GQSIA--ESLIILEYSDDCWN 72 (92)
Q Consensus 54 g~~l~--eS~~I~~yL~~~~~ 72 (92)
|..|. |-.+|++||++.++
T Consensus 48 Gl~Is~eer~avVkYLAd~~G 68 (167)
T PF09098_consen 48 GLPISPEERRAVVKYLADTQG 68 (167)
T ss_dssp -----HHHHHHHHHHHHHHT-
T ss_pred CCCCCHHHHHHHHHHHHHccC
Confidence 44454 56899999999885
No 136
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=29.61 E-value=89 Score=16.80 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=21.3
Q ss_pred hhcCCCceEEEccCCCCChhhhhcCCCCCccceEE
Q 048672 17 KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLV 51 (92)
Q Consensus 17 ~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 51 (92)
++.+-+|+...||... .++..+.... --.|+|+
T Consensus 28 ~~l~~~~~LeVIDv~~-~P~lAe~~~i-vAtPtLv 60 (72)
T cd02978 28 ELLGGPYELEVIDVLK-QPQLAEEDKI-VATPTLV 60 (72)
T ss_pred HhcCCcEEEEEEEccc-CHhHHhhCCE-EEechhh
Confidence 5667789999998865 3444444444 4567665
No 137
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices. Their exact function has not, as yet, been determined []. ; PDB: 1Q19_A 1Q15_D.
Probab=28.78 E-value=1e+02 Score=19.88 Aligned_cols=29 Identities=17% Similarity=0.067 Sum_probs=19.8
Q ss_pred CCCCCccceEE--eCCeeeecHHHHHHHHHhh
Q 048672 41 NPVHKKVPVLV--YSGQSIAESLIILEYSDDC 70 (92)
Q Consensus 41 ~p~~g~vP~L~--~~g~~l~eS~~I~~yL~~~ 70 (92)
-+. |..||-+ .+..+|++|.-++-+++..
T Consensus 118 ds~-G~~pv~lV~~~~~WiTn~LK~V~~~eg~ 148 (201)
T PF09147_consen 118 DSR-GFNPVYLVQSKFIWITNSLKLVSAVEGE 148 (201)
T ss_dssp -SS-SSS-EEEEESSSEEEES-HHHHHHHH-T
T ss_pred cCC-CCceEEEEecCceEEecceEEEEEeecc
Confidence 355 7778765 5567999999999999764
No 138
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=28.26 E-value=73 Score=18.75 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=17.5
Q ss_pred CccceEE-eCCeeeecHHHHHHHHHh
Q 048672 45 KKVPVLV-YSGQSIAESLIILEYSDD 69 (92)
Q Consensus 45 g~vP~L~-~~g~~l~eS~~I~~yL~~ 69 (92)
.|+|+++ ++..+++-.+.+.+-+..
T Consensus 82 ~k~PAVVfD~~~VVYG~tDV~~A~~~ 107 (114)
T PF07511_consen 82 TKYPAVVFDDRYVVYGETDVARALAR 107 (114)
T ss_pred cccCEEEEcCCeEEecccHHHHHHHH
Confidence 5899999 666677766666655543
No 139
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.41 E-value=2.4e+02 Score=19.65 Aligned_cols=65 Identities=11% Similarity=0.071 Sum_probs=41.8
Q ss_pred CeeEEEecCch--------------hhcCCCceEEEccCCCCChhhhhcCCCCCccceEE--eCCeee------ecHHHH
Q 048672 6 SEVVLFRHWPR--------------KLKGKAYVYVGEDLTNKSDLLLDYNPVHKKVPVLV--YSGQSI------AESLII 63 (92)
Q Consensus 6 ~~~~Ly~~~~s--------------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~l------~eS~~I 63 (92)
+-+++|+.|.| ++.+=.|....|+... .+.+-..... ..||+++ -+|..+ .--..|
T Consensus 45 PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~-~p~vAaqfgi-qsIPtV~af~dGqpVdgF~G~qPesql 122 (304)
T COG3118 45 PVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA-EPMVAAQFGV-QSIPTVYAFKDGQPVDGFQGAQPESQL 122 (304)
T ss_pred CeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc-chhHHHHhCc-CcCCeEEEeeCCcCccccCCCCcHHHH
Confidence 34566777777 4444458888888764 4556666666 7899877 566544 223567
Q ss_pred HHHHHhhcC
Q 048672 64 LEYSDDCWN 72 (92)
Q Consensus 64 ~~yL~~~~~ 72 (92)
-+||++.-+
T Consensus 123 r~~ld~~~~ 131 (304)
T COG3118 123 RQFLDKVLP 131 (304)
T ss_pred HHHHHHhcC
Confidence 888877544
No 140
>PF04384 Fe-S_assembly: Iron-sulphur cluster assembly; InterPro: IPR007479 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents IscX proteins (also known as hypothetical protein YfhJ) that are part of the ISC system. IscX is active as a monomer. The structure of YfhJ is an orthogonal alpha-bundle []. YfhJ is a small acidic protein that binds IscS, and contains a modified winged helix motif that is usually found in DNA-binding proteins []. YfhJ/IscX can bind Fe, and may function as an Fe donor in the assembly of FeS clusters ; GO: 0016226 iron-sulfur cluster assembly; PDB: 2BZT_A 1UJ8_A.
Probab=25.30 E-value=71 Score=16.85 Aligned_cols=16 Identities=13% Similarity=-0.043 Sum_probs=13.4
Q ss_pred ecHHHHHHHHHhhcCC
Q 048672 58 AESLIILEYSDDCWNN 73 (92)
Q Consensus 58 ~eS~~I~~yL~~~~~~ 73 (92)
.|+..|+.-|.+.||+
T Consensus 4 ~D~~eIA~~L~e~~pd 19 (64)
T PF04384_consen 4 TDSEEIAIELYEKYPD 19 (64)
T ss_dssp T-HHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHCCC
Confidence 5788999999999987
No 141
>COG2975 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.23 E-value=73 Score=16.57 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=14.3
Q ss_pred eecHHHHHHHHHhhcCC
Q 048672 57 IAESLIILEYSDDCWNN 73 (92)
Q Consensus 57 l~eS~~I~~yL~~~~~~ 73 (92)
-++|.-|++-|.+.||+
T Consensus 3 WtD~~~Iae~Lyd~~pd 19 (64)
T COG2975 3 WTDSQEIAEALYDAYPD 19 (64)
T ss_pred cchHHHHHHHHHhcCCC
Confidence 36889999999998875
No 142
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=25.04 E-value=80 Score=17.23 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.4
Q ss_pred eEEeCCeeeecHHHHHHHHHh
Q 048672 49 VLVYSGQSIAESLIILEYSDD 69 (92)
Q Consensus 49 ~L~~~g~~l~eS~~I~~yL~~ 69 (92)
-|+..|.+|.|...+..|+..
T Consensus 47 rLIy~GKiLkD~~tL~~~~~~ 67 (79)
T cd01790 47 RLIYSGKLLPDHLKLRDVLRK 67 (79)
T ss_pred EEEEcCeeccchhhHHHHhhc
Confidence 577999999999999999854
No 143
>PRK08227 autoinducer 2 aldolase; Validated
Probab=23.67 E-value=1.3e+02 Score=20.38 Aligned_cols=35 Identities=14% Similarity=0.154 Sum_probs=24.8
Q ss_pred hhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhc
Q 048672 35 DLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCW 71 (92)
Q Consensus 35 ~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~ 71 (92)
+.|.+.--. +.+||++.||... +...+++.+.+..
T Consensus 182 ~~f~~vv~a-~~vPVviaGG~k~-~~~~~L~~v~~ai 216 (264)
T PRK08227 182 EGFERITAG-CPVPIVIAGGKKL-PERDALEMCYQAI 216 (264)
T ss_pred HHHHHHHHc-CCCcEEEeCCCCC-CHHHHHHHHHHHH
Confidence 456665555 7899999999887 4466777776543
No 144
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.38 E-value=56 Score=20.33 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=30.8
Q ss_pred eeEEEecCch-----------------hhcCCCceEEEccCCC--CChhhhhcCCCCCccceEEeCCee
Q 048672 7 EVVLFRHWPR-----------------KLKGKAYVYVGEDLTN--KSDLLLDYNPVHKKVPVLVYSGQS 56 (92)
Q Consensus 7 ~~~Ly~~~~s-----------------~~~gi~~~~~~v~~~~--~~~~~~~~~p~~g~vP~L~~~g~~ 56 (92)
.++||.||.. +..++..+..-|...+ ....|.+.+.+ .+|.|-|.+..
T Consensus 32 ~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L--~f~LLSD~~~~ 98 (157)
T COG1225 32 PVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGL--TFPLLSDEDGE 98 (157)
T ss_pred cEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCC--CceeeECCcHH
Confidence 4889999865 4444555555555543 34678877776 58888766554
No 145
>PRK06852 aldolase; Validated
Probab=23.27 E-value=1.3e+02 Score=20.81 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=23.5
Q ss_pred hhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhh
Q 048672 35 DLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDC 70 (92)
Q Consensus 35 ~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~ 70 (92)
+.|....-.-|.+||++.||... ....+++.+.+.
T Consensus 219 e~f~~vv~~~g~vpVviaGG~k~-~~~e~L~~v~~a 253 (304)
T PRK06852 219 ELFKEAVLAAGRTKVVCAGGSST-DPEEFLKQLYEQ 253 (304)
T ss_pred HHHHHHHHhCCCCcEEEeCCCCC-CHHHHHHHHHHH
Confidence 56765554414899999999887 445566666544
No 146
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=22.51 E-value=1.1e+02 Score=19.37 Aligned_cols=15 Identities=20% Similarity=0.558 Sum_probs=11.7
Q ss_pred CccceEEeCCeeeec
Q 048672 45 KKVPVLVYSGQSIAE 59 (92)
Q Consensus 45 g~vP~L~~~g~~l~e 59 (92)
..+|+++.+|..+..
T Consensus 166 ~gtPtfiInGky~v~ 180 (207)
T PRK10954 166 RGVPAMFVNGKYMVN 180 (207)
T ss_pred CCCCEEEECCEEEEc
Confidence 579999999886544
No 147
>PF11734 TilS_C: TilS substrate C-terminal domain; InterPro: IPR012796 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of lysidine-tRNA(Ile) synthetase, which ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a PP-loop motif involved in ATP binding. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) versus AUG (Met) and UGA (stop) versus UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This domain is found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain architecture of this protein is variable; some, including characterised proteins of Escherichia coli and Bacillus subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family. It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer). The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, E. coli NtrL, and B. subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain. The HUP domain class (after HIGH-signature proteins, UspA, and PP-ATPase) groups together PP-loop ATPases, the nucleotide-binding domains of class I aminoacyl-tRNA synthetases, UspA protein (USPA domains), photolyases, and electron transport flavoproteins (ETFP). The HUP domain is a distinct class of alpha/beta domain[]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016879 ligase activity, forming carbon-nitrogen bonds, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3A2K_A 3HJ7_A 1NI5_A.
Probab=22.17 E-value=1e+02 Score=16.20 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=10.2
Q ss_pred CccceEEeCCeee
Q 048672 45 KKVPVLVYSGQSI 57 (92)
Q Consensus 45 g~vP~L~~~g~~l 57 (92)
.++|+|.+++.++
T Consensus 38 ~~~Pll~~~~~iv 50 (74)
T PF11734_consen 38 DRLPLLCDGGEIV 50 (74)
T ss_dssp CCSEEEEETTEEE
T ss_pred CcEEEEEECCEEE
Confidence 5789999887765
No 148
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=21.49 E-value=72 Score=24.04 Aligned_cols=35 Identities=23% Similarity=0.319 Sum_probs=22.8
Q ss_pred hhhhhcCCCCCccceEEeCCeeeecHHHHHHHHHhhcCCC
Q 048672 35 DLLLDYNPVHKKVPVLVYSGQSIAESLIILEYSDDCWNNT 74 (92)
Q Consensus 35 ~~~~~~~p~~g~vP~L~~~g~~l~eS~~I~~yL~~~~~~~ 74 (92)
.++.--.|- -||+|+ .|++++| .|++||......+
T Consensus 492 A~~v~PYPP--GIP~l~-PGE~it~--~~i~yl~~l~e~g 526 (557)
T COG1982 492 AEFVLPYPP--GIPLLV-PGERITE--EVIDYLLALQEFG 526 (557)
T ss_pred eeeeeecCC--CCceec-cCCCcCH--HHHHHHHHHHHcC
Confidence 334444553 488877 5668888 8999998764333
No 149
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=20.16 E-value=2e+02 Score=18.78 Aligned_cols=34 Identities=12% Similarity=0.060 Sum_probs=21.5
Q ss_pred hhcCCCceE---EEccCCCCChhhhhcCCCCCccceEE
Q 048672 17 KLKGKAYVY---VGEDLTNKSDLLLDYNPVHKKVPVLV 51 (92)
Q Consensus 17 ~~~gi~~~~---~~v~~~~~~~~~~~~~p~~g~vP~L~ 51 (92)
...+||.+. ..|.+.+..-.++...-. |++|+++
T Consensus 156 ~~~~Idp~~V~~~~ITLNHD~G~w~~lg~~-g~lP~~l 192 (200)
T TIGR03759 156 NRHQIDPAKVRSRQITLNHDNGRWLQLGLQ-GQLPAVV 192 (200)
T ss_pred HHcCCCHHHeecCeeEEecCcchHHHccCC-CCCCEEE
Confidence 677777443 345555445556666545 8899887
Done!