BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 048673
         (243 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3T9L|A Chain A, Structure Of N-Terminal Dusp-Ubl Domains Of Human Usp15
          Length = 230

 Score = 35.8 bits (81), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 10/75 (13%)

Query: 141 GVAFMDVKKAKILASIVLMTSMLSGG-FFIQKGPFFMSWLRYISFNNYDSYQHHCSSDSC 199
           G A +D +++ I  + +L TS+  G  +++    +F  W +Y+ F+++D YQ    +   
Sbjct: 5   GAADLDTQRSDI--ATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYP 62

Query: 200 SPPFIRELRIDHSGL 214
            P       ID+SGL
Sbjct: 63  GP-------IDNSGL 70


>pdb|3PV1|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Domains
 pdb|3PV1|B Chain B, Crystal Structure Of The Usp15 Dusp-Ubl Domains
          Length = 225

 Score = 35.8 bits (81), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 10/75 (13%)

Query: 141 GVAFMDVKKAKILASIVLMTSMLSGG-FFIQKGPFFMSWLRYISFNNYDSYQHHCSSDSC 199
           G A +D +++ I  + +L TS+  G  +++    +F  W +Y+ F+++D YQ    +   
Sbjct: 7   GAADLDTQRSDI--ATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYP 64

Query: 200 SPPFIRELRIDHSGL 214
            P       ID+SGL
Sbjct: 65  GP-------IDNSGL 72


>pdb|1W6V|A Chain A, Solution Structure Of The Dusp Domain Of Husp15
          Length = 141

 Score = 35.4 bits (80), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 10/75 (13%)

Query: 141 GVAFMDVKKAKILASIVLMTSMLSGG-FFIQKGPFFMSWLRYISFNNYDSYQHHCSSDSC 199
           G A +D +++ I  + +L TS+  G  +++    +F  W +Y+ F+++D YQ    +   
Sbjct: 26  GAADLDTQRSDI--ATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYP 83

Query: 200 SPPFIRELRIDHSGL 214
            P       ID+SGL
Sbjct: 84  GP-------IDNSGL 91


>pdb|3LMN|A Chain A, Oligomeric Structure Of The Dusp Domain Of Human Usp15
 pdb|3LMN|B Chain B, Oligomeric Structure Of The Dusp Domain Of Human Usp15
          Length = 135

 Score = 35.4 bits (80), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 10/75 (13%)

Query: 141 GVAFMDVKKAKILASIVLMTSMLSGG-FFIQKGPFFMSWLRYISFNNYDSYQHHCSSDSC 199
           G A +D +++ I  + +L TS+  G  +++    +F  W +Y+ F+++D YQ    +   
Sbjct: 7   GAADLDTQRSDI--ATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYP 64

Query: 200 SPPFIRELRIDHSGL 214
            P       ID+SGL
Sbjct: 65  GP-------IDNSGL 72


>pdb|4A3P|A Chain A, Structure Of Usp15 Dusp-Ubl Deletion Mutant
          Length = 217

 Score = 33.5 bits (75), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 10/73 (13%)

Query: 143 AFMDVKKAKILASIVLMTSMLSGG-FFIQKGPFFMSWLRYISFNNYDSYQHHCSSDSCSP 201
           A +D +++ I  + +L TS+  G  +++    +F  W +Y+ F+++D YQ    +    P
Sbjct: 4   ADLDTQRSDI--ATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGP 61

Query: 202 PFIRELRIDHSGL 214
                  ID+SGL
Sbjct: 62  -------IDNSGL 67


>pdb|4A3O|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Monomer
 pdb|4A3O|B Chain B, Crystal Structure Of The Usp15 Dusp-Ubl Monomer
          Length = 220

 Score = 33.5 bits (75), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 10/73 (13%)

Query: 143 AFMDVKKAKILASIVLMTSMLSGG-FFIQKGPFFMSWLRYISFNNYDSYQHHCSSDSCSP 201
           A +D +++ I  + +L TS+  G  +++    +F  W +Y+ F+++D YQ    +    P
Sbjct: 4   ADLDTQRSDI--ATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGP 61

Query: 202 PFIRELRIDHSGL 214
                  ID+SGL
Sbjct: 62  -------IDNSGL 67


>pdb|3PPA|A Chain A, Structure Of The Dusp-Ubl Domains Of Usp15
          Length = 237

 Score = 33.5 bits (75), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 10/73 (13%)

Query: 143 AFMDVKKAKILASIVLMTSMLSGG-FFIQKGPFFMSWLRYISFNNYDSYQHHCSSDSCSP 201
           A +D +++ I  + +L TS+  G  +++    +F  W +Y+ F+++D YQ    +    P
Sbjct: 21  ADLDTQRSDI--ATLLKTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQMGDQNVYPGP 78

Query: 202 PFIRELRIDHSGL 214
                  ID+SGL
Sbjct: 79  -------IDNSGL 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.138    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,464,302
Number of Sequences: 62578
Number of extensions: 167774
Number of successful extensions: 352
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 7
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)