Query 048673
Match_columns 243
No_of_seqs 142 out of 1596
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 11:54:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/048673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03211 ABC transporter G-25; 100.0 1.1E-42 2.4E-47 324.3 24.2 237 1-238 284-658 (659)
2 TIGR00955 3a01204 The Eye Pigm 100.0 1.8E-41 3.9E-46 315.4 24.9 240 1-241 244-616 (617)
3 KOG0061 Transporter, ABC super 100.0 3.6E-40 7.8E-45 304.7 23.5 241 1-242 248-612 (613)
4 PLN03140 ABC transporter G fam 100.0 5.4E-40 1.2E-44 326.2 24.3 236 1-238 415-789 (1470)
5 TIGR00956 3a01205 Pleiotropic 100.0 8.7E-40 1.9E-44 325.1 21.5 197 41-239 455-695 (1394)
6 PLN03140 ABC transporter G fam 100.0 1.5E-38 3.2E-43 316.0 24.7 200 41-241 1249-1469(1470)
7 KOG0065 Pleiotropic drug resis 100.0 1.1E-37 2.3E-42 296.5 22.0 236 1-238 339-730 (1391)
8 TIGR00956 3a01205 Pleiotropic 100.0 1E-35 2.2E-40 296.2 20.5 237 1-240 981-1392(1394)
9 KOG0065 Pleiotropic drug resis 100.0 6.6E-31 1.4E-35 250.4 15.5 239 1-240 1009-1385(1391)
10 TIGR03062 pip_yhgE_Cterm YhgE/ 99.7 4.6E-16 9.9E-21 126.4 17.6 148 79-239 58-208 (208)
11 TIGR01291 nodJ ABC-2 type tran 99.7 2.7E-14 5.9E-19 119.5 21.8 195 26-238 54-251 (253)
12 PF01061 ABC2_membrane: ABC-2 99.7 3.2E-18 7E-23 138.1 -3.5 152 41-195 54-207 (210)
13 TIGR01247 drrB daunorubicin re 99.6 5.6E-14 1.2E-18 116.3 21.4 179 41-232 53-234 (236)
14 TIGR00025 Mtu_efflux ABC trans 99.6 9.7E-14 2.1E-18 114.7 19.0 163 65-237 64-231 (232)
15 PRK15066 inner membrane transp 99.5 6.2E-12 1.3E-16 105.5 22.4 154 78-241 101-256 (257)
16 TIGR03861 phenyl_ABC_PedC alco 99.4 3.1E-11 6.6E-16 101.0 21.0 181 41-236 65-250 (253)
17 TIGR01248 drrC daunorubicin re 99.4 1.7E-11 3.7E-16 94.7 15.2 128 63-195 15-147 (152)
18 COG0842 ABC-type multidrug tra 99.4 9.8E-11 2.1E-15 98.3 20.5 190 41-240 93-285 (286)
19 TIGR03518 ABC_perm_GldF glidin 98.9 5.3E-07 1.1E-11 74.9 21.1 154 67-237 71-240 (240)
20 PF12698 ABC2_membrane_3: ABC- 98.7 4.2E-09 9E-14 90.5 0.0 156 61-231 181-343 (344)
21 PF12679 ABC2_membrane_2: ABC- 98.4 2.2E-05 4.7E-10 66.1 16.1 162 69-238 90-276 (277)
22 COG1682 TagG ABC-type polysacc 98.4 0.00011 2.4E-09 61.7 20.1 150 79-240 106-258 (263)
23 PRK15176 Vi polysaccharide exp 98.1 0.00076 1.6E-08 56.8 18.9 108 123-240 152-262 (264)
24 COG1277 NosY ABC-type transpor 97.6 0.0063 1.4E-07 51.3 15.7 170 69-239 83-277 (278)
25 COG1511 Predicted membrane pro 97.1 0.0097 2.1E-07 57.7 12.6 144 73-228 610-755 (780)
26 COG4587 ABC-type uncharacteriz 97.0 0.086 1.9E-06 43.4 15.4 88 145-241 173-263 (268)
27 PF12051 DUF3533: Protein of u 96.9 0.059 1.3E-06 47.9 15.5 134 79-226 240-380 (382)
28 TIGR01257 rim_protein retinal- 96.9 0.18 3.8E-06 54.0 20.7 174 56-233 668-857 (2272)
29 PF06182 ABC2_membrane_6: ABC- 96.7 0.26 5.5E-06 40.4 18.0 159 69-240 54-224 (229)
30 PF03379 CcmB: CcmB protein; 96.4 0.053 1.2E-06 44.2 10.8 91 69-161 68-166 (215)
31 TIGR01257 rim_protein retinal- 96.3 0.37 8E-06 51.7 18.3 167 62-232 1701-1895(2272)
32 PF06422 PDR_CDR: CDR ABC tran 95.7 0.015 3.2E-07 41.8 3.9 36 206-241 42-77 (103)
33 TIGR01190 ccmB heme exporter p 95.3 0.37 8E-06 39.2 10.8 92 68-161 64-163 (211)
34 TIGR03732 lanti_perm_MutE lant 94.1 2.9 6.3E-05 34.6 17.5 74 70-143 64-149 (241)
35 COG1668 NatB ABC-type Na+ effl 94.0 4.3 9.4E-05 36.4 17.1 78 78-155 227-316 (407)
36 PF12730 ABC2_membrane_4: ABC- 93.7 2.2 4.8E-05 33.6 12.3 86 69-155 70-171 (232)
37 COG4200 Uncharacterized protei 93.4 3.7 8E-05 33.6 14.6 147 70-240 76-235 (239)
38 COG2386 CcmB ABC-type transpor 88.7 11 0.00025 30.4 12.2 94 65-161 68-169 (221)
39 TIGR03733 lanti_perm_MutG lant 86.0 18 0.0004 29.9 17.9 69 78-146 85-158 (248)
40 KOG0059 Lipid exporter ABCA1 a 85.6 14 0.00031 36.7 12.2 120 63-185 320-447 (885)
41 PF08370 PDR_assoc: Plant PDR 82.0 2.4 5.2E-05 27.6 3.5 36 205-240 20-57 (65)
42 PF01102 Glycophorin_A: Glycop 70.7 7.9 0.00017 28.6 4.0 29 212-240 67-95 (122)
43 PF06123 CreD: Inner membrane 57.3 1.3E+02 0.0029 27.3 9.9 28 27-54 286-314 (430)
44 PRK11715 inner membrane protei 49.7 1.9E+02 0.0041 26.4 9.7 29 26-54 291-320 (436)
45 PF05545 FixQ: Cbb3-type cytoc 48.9 35 0.00076 20.5 3.5 27 214-240 10-36 (49)
46 PF10281 Ish1: Putative stress 45.4 27 0.00058 19.8 2.5 31 8-38 6-36 (38)
47 PF02009 Rifin_STEVOR: Rifin/s 45.2 26 0.00057 30.1 3.4 16 226-241 271-286 (299)
48 cd01324 cbb3_Oxidase_CcoQ Cyto 38.8 55 0.0012 19.8 3.2 27 214-240 11-37 (48)
49 PTZ00046 rifin; Provisional 35.2 44 0.00094 29.5 3.3 15 227-241 331-345 (358)
50 TIGR01477 RIFIN variant surfac 35.2 44 0.00095 29.4 3.3 15 227-241 326-340 (353)
51 PF05568 ASFV_J13L: African sw 30.0 70 0.0015 24.3 3.2 27 215-241 34-60 (189)
52 PF04387 PTPLA: Protein tyrosi 27.9 1.6E+02 0.0035 22.8 5.1 24 171-194 75-98 (164)
53 PRK13718 conjugal transfer pro 25.3 1.2E+02 0.0026 20.4 3.3 11 182-192 24-34 (84)
54 COG3559 TnrB3 Putative exporte 25.1 5.4E+02 0.012 23.7 18.6 92 126-238 441-533 (536)
55 COG3559 TnrB3 Putative exporte 24.9 5.5E+02 0.012 23.6 11.2 94 122-233 168-261 (536)
56 PF10777 YlaC: Inner membrane 24.1 3E+02 0.0064 21.1 5.6 23 70-96 17-39 (155)
57 PF06667 PspB: Phage shock pro 23.6 1.6E+02 0.0034 19.7 3.7 20 223-242 13-32 (75)
58 PF15203 TMEM95: TMEM95 family 23.0 55 0.0012 24.1 1.5 24 171-195 67-90 (152)
59 PF12760 Zn_Tnp_IS1595: Transp 22.7 68 0.0015 18.9 1.7 21 7-27 2-26 (46)
60 TIGR01478 STEVOR variant surfa 22.4 1E+02 0.0023 26.2 3.2 25 214-238 263-287 (295)
61 PF11100 TrbE: Conjugal transf 21.6 1.9E+02 0.0041 18.6 3.5 12 181-192 15-26 (66)
62 PF05393 Hum_adeno_E3A: Human 21.6 2E+02 0.0044 19.9 3.9 7 216-222 37-43 (94)
63 PTZ00370 STEVOR; Provisional 21.5 1.1E+02 0.0024 26.1 3.2 25 214-238 259-283 (296)
64 PF02613 Nitrate_red_del: Nitr 21.4 49 0.0011 24.4 1.1 28 6-33 65-93 (136)
65 PF15086 UPF0542: Uncharacteri 20.7 2.3E+02 0.0049 18.8 3.9 28 141-168 13-40 (74)
66 COG4736 CcoQ Cbb3-type cytochr 20.4 1.7E+02 0.0037 18.6 3.2 26 215-240 11-36 (60)
No 1
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.1e-42 Score=324.28 Aligned_cols=237 Identities=44% Similarity=0.793 Sum_probs=214.8
Q ss_pred CcccccCcchHHHHHHhcCCCCCCCCCChhhHHhhhcC------------------------------------------
Q 048673 1 SSLYSRKASEAVDYFSSIGCSPCIAMNPAEFPIDLANG------------------------------------------ 38 (243)
Q Consensus 1 ~~~Y~G~~~~~~~~F~~~g~~~p~~~npad~~~~~~~~------------------------------------------ 38 (243)
|++|+|+++++++||+++|++||++.|||||++|+++.
T Consensus 284 ~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 363 (659)
T PLN03211 284 RCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQ 363 (659)
T ss_pred cEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccHHHHHHHhhhhhhc
Confidence 57899999999999999999999999999999988531
Q ss_pred -----------C---------------------------------------------------------------ccHHH
Q 048673 39 -----------N---------------------------------------------------------------ASLLF 44 (243)
Q Consensus 39 -----------~---------------------------------------------------------------~g~lf 44 (243)
+ .|++|
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i~~~ll~G~lf~~~~~~~~~~r~g~lf 443 (659)
T PLN03211 364 ANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDFRDVQDRLGLLF 443 (659)
T ss_pred chhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0 18888
Q ss_pred HHHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 048673 45 FISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNML 124 (243)
Q Consensus 45 ~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~ 124 (243)
+++++..+.+.+.+++.++.||+++.||+.+|+|++.+|++||+++++|+.++.+++|.+++|||+|+++++++|+.+++
T Consensus 444 f~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~l 523 (659)
T PLN03211 444 FISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLL 523 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHH
Confidence 88888888887899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCCCchHHHHHHHhhchhhhhhhhhhcc-ccCCCCC-
Q 048673 125 TVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQHHCS-SDSCSPP- 202 (243)
Q Consensus 125 ~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p~mp~~~~wi~~isp~~y~~~~~l~~-~f~~~~~- 202 (243)
++++..++++++|++++++++|.+.|+.+++++..+++++||+++++||+||+|++|+||++| ++++++. ||.+.+.
T Consensus 524 i~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~~ip~~~~W~~ylS~~~y-~~eal~~nef~~~~~~ 602 (659)
T PLN03211 524 VLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKYISTTFY-SYRLLINVQYGEGKRI 602 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHhhchHHHHHHHHhCHHHH-HHHHHHHHhcCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999987 9999998 8864211
Q ss_pred ----Ccc----------------cccccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048673 203 ----FIR----------------ELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMK 238 (243)
Q Consensus 203 ----~~~----------------g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~ 238 (243)
.|. +.+..+.|.++++|+++.+++++++|+.|++++
T Consensus 603 ~~~~~C~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 603 SSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred ccccCCCCcccCCCCCCccchhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 011 111235799999999999999999999998765
No 2
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.8e-41 Score=315.43 Aligned_cols=240 Identities=28% Similarity=0.418 Sum_probs=218.5
Q ss_pred CcccccCcchHHHHHHhcCCCCCCCCCChhhHHhhhcCC-----------------------------------------
Q 048673 1 SSLYSRKASEAVDYFSSIGCSPCIAMNPAEFPIDLANGN----------------------------------------- 39 (243)
Q Consensus 1 ~~~Y~G~~~~~~~~F~~~g~~~p~~~npad~~~~~~~~~----------------------------------------- 39 (243)
|++|+||++++.+||+++|++||++.||+||++|+++.+
T Consensus 244 ~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 323 (617)
T TIGR00955 244 RVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGL 323 (617)
T ss_pred eEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhcccccc
Confidence 578999999999999999999999999999999987521
Q ss_pred ---------------------------------------------------------------------ccHHHHHHHHH
Q 048673 40 ---------------------------------------------------------------------ASLLFFISVFW 50 (243)
Q Consensus 40 ---------------------------------------------------------------------~g~lf~~~~~~ 50 (243)
.|++|++....
T Consensus 324 ~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~ 403 (617)
T TIGR00955 324 VKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNM 403 (617)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 06788888888
Q ss_pred HHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Q 048673 51 GFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCI 130 (243)
Q Consensus 51 ~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~ 130 (243)
.+.+++..++.++.||+++.||+.+|+|++.+|++||+++++|..++.+++|.++.||++|+++++++|+.+++++++..
T Consensus 404 ~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~ 483 (617)
T TIGR00955 404 TFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVA 483 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHH
Confidence 88877788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCCCCC-C---
Q 048673 131 LAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSCSPP-F--- 203 (243)
Q Consensus 131 l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~~~~-~--- 203 (243)
++++++|+++++++||.+.|..+++++++++++++|+++| +||+|++|++|+||++| ++++++. ||.+... .
T Consensus 484 ~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~y-a~~al~~nef~~~~~~~c~~ 562 (617)
T TIGR00955 484 NVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRY-GNEGLLINQWSDVDNIECTS 562 (617)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHH-HHHHHHHHHhCCCccccccC
Confidence 9999999999999999999999999999999999999998 99999999999999987 9999998 8865321 0
Q ss_pred ------c----------ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 048673 204 ------I----------RELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVT 241 (243)
Q Consensus 204 ------~----------~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~~~~ 241 (243)
+ .|.+.++.|.++++|++++++|++++++.|+++.+++
T Consensus 563 ~~~~~~c~~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~ 616 (617)
T TIGR00955 563 ANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRK 616 (617)
T ss_pred cCcCCCCCcChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 1 1333446899999999999999999999999987664
No 3
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.6e-40 Score=304.72 Aligned_cols=241 Identities=32% Similarity=0.559 Sum_probs=220.6
Q ss_pred CcccccCcchHHHHHHhcCCCCCCCCCChhhHHhhhcC-----------------------C------------------
Q 048673 1 SSLYSRKASEAVDYFSSIGCSPCIAMNPAEFPIDLANG-----------------------N------------------ 39 (243)
Q Consensus 1 ~~~Y~G~~~~~~~~F~~~g~~~p~~~npad~~~~~~~~-----------------------~------------------ 39 (243)
+++|+|+++++.+||+++|++||++.||+||++|+++. +
T Consensus 248 ~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (613)
T KOG0061|consen 248 EVVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTSKK 327 (613)
T ss_pred cEEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhcccccc
Confidence 57999999999999999999999999999999998872 0
Q ss_pred --------------------------------------------------------------ccHHHHHHHHHHHHHHHH
Q 048673 40 --------------------------------------------------------------ASLLFFISVFWGFFPLFT 57 (243)
Q Consensus 40 --------------------------------------------------------------~g~lf~~~~~~~~~~~~~ 57 (243)
.|++|+.+..+.+..+++
T Consensus 328 ~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~ 407 (613)
T KOG0061|consen 328 VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFG 407 (613)
T ss_pred cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 177888888888888888
Q ss_pred HHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 048673 58 ATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLG 137 (243)
Q Consensus 58 ~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg 137 (243)
+++.|+.||+++.||+++|+|+.++|++||+++++|+.++.+++|..++||++|++++..+|..+.+++++..++++++|
T Consensus 408 ~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~ 487 (613)
T KOG0061|consen 408 AVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLG 487 (613)
T ss_pred HHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCC--CCCC--------c
Q 048673 138 LIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSC--SPPF--------I 204 (243)
Q Consensus 138 ~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~--~~~~--------~ 204 (243)
++++++++|...|..+++++..++++++|++++ ++|.|++|++|+|+.|| ++|++.. ||.+ .... .
T Consensus 488 ~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry-~~e~l~~n~~~~~~~~~~~~~~~~~~~ 566 (613)
T KOG0061|consen 488 LFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRY-AFEALLINQFSGGSSRCFLSGNLCCES 566 (613)
T ss_pred HHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHH-HHHHHHHHHhhccccccccCcCCcccc
Confidence 999999999999999999999999999999998 99999999999999988 9999999 8874 1110 1
Q ss_pred --------ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 048673 205 --------RELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVTV 242 (243)
Q Consensus 205 --------~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~~~~~ 242 (243)
.|.+.++.|.|+.+++++.++|++++|..|+++.|++.
T Consensus 567 ~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 567 TGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 12223468999999999999999999999999988764
No 4
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.4e-40 Score=326.16 Aligned_cols=236 Identities=18% Similarity=0.252 Sum_probs=213.2
Q ss_pred CcccccCcchHHHHHHhcCCCCCCCCCChhhHHhhhcCC-----------------------------------------
Q 048673 1 SSLYSRKASEAVDYFSSIGCSPCIAMNPAEFPIDLANGN----------------------------------------- 39 (243)
Q Consensus 1 ~~~Y~G~~~~~~~~F~~~g~~~p~~~npad~~~~~~~~~----------------------------------------- 39 (243)
|++|+||++++++||+++||+||+++|||||++|+++++
T Consensus 415 ~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 494 (1470)
T PLN03140 415 QIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVP 494 (1470)
T ss_pred eEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhh
Confidence 578999999999999999999999999999999886520
Q ss_pred ----------------------------------------------------------------------------ccHH
Q 048673 40 ----------------------------------------------------------------------------ASLL 43 (243)
Q Consensus 40 ----------------------------------------------------------------------------~g~l 43 (243)
.|++
T Consensus 495 ~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~l 574 (1470)
T PLN03140 495 FDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGAL 574 (1470)
T ss_pred hhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHH
Confidence 0677
Q ss_pred HHHHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 048673 44 FFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNM 123 (243)
Q Consensus 44 f~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~ 123 (243)
|+++++.++.+ +..+..++.||++|.|||+.++|++++|++|+.+.++|+.++.++++.+++|||+|+++++++|+.++
T Consensus 575 ff~~l~~~~~~-~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~ 653 (1470)
T PLN03140 575 LFSMIINMFNG-FAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQL 653 (1470)
T ss_pred HHHHHHHHHHH-HHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHH
Confidence 77777777766 58889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCCC
Q 048673 124 LTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSCS 200 (243)
Q Consensus 124 ~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~~ 200 (243)
+++++..+++++++.+++++++|...|+.+++++++++++++||++| +||+||+|++|+||++| ++++++. ||.++
T Consensus 654 l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Y-a~eal~~NEf~~~ 732 (1470)
T PLN03140 654 LLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSY-GFNALAVNEMFAP 732 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHH-HHHHHHHHhccCc
Confidence 99999999999999999999999999999999999999999999999 99999999999999987 9999999 98654
Q ss_pred CC---------Ccccc--------ccc--chHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048673 201 PP---------FIREL--------RID--HSGLEVWAMMPMIIGYRLVAYLSLRRMK 238 (243)
Q Consensus 201 ~~---------~~~g~--------~~~--~~~~~~~~L~~~~i~~~~la~~~L~~~~ 238 (243)
.. ...|. +.+ ..|.++++|+++.++|+++++++|++.+
T Consensus 733 ~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 733 RWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred cccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 21 11222 222 3589999999999999999999999876
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=8.7e-40 Score=325.10 Aligned_cols=197 Identities=21% Similarity=0.286 Sum_probs=179.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHH
Q 048673 41 SLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFS 120 (243)
Q Consensus 41 g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~ 120 (243)
|++|+++++.++++ +..+..+..||+++.||+++++|++++|++|++++++|+.++.+++|.+++|||+|++.++++|+
T Consensus 455 g~lf~~~~~~~~~~-~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff 533 (1394)
T TIGR00956 455 GALFFAILFNAFSS-LLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFF 533 (1394)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHH
Confidence 88999999988887 46677778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-cc
Q 048673 121 QNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SD 197 (243)
Q Consensus 121 ~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f 197 (243)
.+++++++..+++++++.++++++||.+.|+.+++++++++++++||++| +||+|++|++|+||++| ++++++. ||
T Consensus 534 ~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~y-afeal~~nef 612 (1394)
T TIGR00956 534 FYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAY-AFESLMVNEF 612 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHH-HHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999 99999999999999987 9999998 88
Q ss_pred CCCCC--------------------------------Cccc---------ccccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 048673 198 SCSPP--------------------------------FIRE---------LRIDHSGLEVWAMMPMIIGYRLVAYLSLRR 236 (243)
Q Consensus 198 ~~~~~--------------------------------~~~g---------~~~~~~~~~~~~L~~~~i~~~~la~~~L~~ 236 (243)
++... .+.| .+.++.|+|+++|+++.++|++++++.+++
T Consensus 613 ~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~ 692 (1394)
T TIGR00956 613 HGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEF 692 (1394)
T ss_pred cCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 54210 0122 123468999999999999999999999998
Q ss_pred hhh
Q 048673 237 MKI 239 (243)
Q Consensus 237 ~~~ 239 (243)
.++
T Consensus 693 ~~~ 695 (1394)
T TIGR00956 693 NKG 695 (1394)
T ss_pred ccc
Confidence 763
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.5e-38 Score=315.95 Aligned_cols=200 Identities=19% Similarity=0.216 Sum_probs=181.7
Q ss_pred cHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHH
Q 048673 41 SLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFS 120 (243)
Q Consensus 41 g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~ 120 (243)
|++|+.+++.++....+.++.+..||++|.||+.+|+|++.+|++|++++|+|+.++.+++|.+++|||+|++.+++.|+
T Consensus 1249 g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~ 1328 (1470)
T PLN03140 1249 GAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFF 1328 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHH
Confidence 56677777777766667888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-cc
Q 048673 121 QNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SD 197 (243)
Q Consensus 121 ~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f 197 (243)
.+++++++..++++++|+++++++||.+.|..+++++..++++|+|+++| +||+||+|++|+||++| ++++++. ||
T Consensus 1329 ~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y-~~~~l~~~~f 1407 (1470)
T PLN03140 1329 WFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAW-TVYGLIVSQY 1407 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHH-HHhhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999 99999999999999987 9999998 98
Q ss_pred CCCCC--Cc----------------ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 048673 198 SCSPP--FI----------------RELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVT 241 (243)
Q Consensus 198 ~~~~~--~~----------------~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~~~~ 241 (243)
.+.+. .+ .|++.+..|.+++++++|+++|++++++.+++.+.+|
T Consensus 1408 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~ 1469 (1470)
T PLN03140 1408 GDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQT 1469 (1470)
T ss_pred CCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 76321 11 2333456799999999999999999999999998776
No 7
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-37 Score=296.46 Aligned_cols=236 Identities=19% Similarity=0.309 Sum_probs=216.6
Q ss_pred CcccccCcchHHHHHHhcCCCCCCCCCChhhHHhhhcCC-----------------------------------------
Q 048673 1 SSLYSRKASEAVDYFSSIGCSPCIAMNPAEFPIDLANGN----------------------------------------- 39 (243)
Q Consensus 1 ~~~Y~G~~~~~~~~F~~~g~~~p~~~npad~~~~~~~~~----------------------------------------- 39 (243)
+++|+||++++++|||++||.||+++++|||+.++++..
T Consensus 339 ~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~ 418 (1391)
T KOG0065|consen 339 YQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKP 418 (1391)
T ss_pred ceEEeccHHHHHHHHHhcCccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcch
Confidence 579999999999999999999999999999999999831
Q ss_pred --------------------------------------------------------------------------ccHHHH
Q 048673 40 --------------------------------------------------------------------------ASLLFF 45 (243)
Q Consensus 40 --------------------------------------------------------------------------~g~lf~ 45 (243)
.|++|+
T Consensus 419 ~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lff 498 (1391)
T KOG0065|consen 419 YDKSKKHKAALVSSKYSVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFF 498 (1391)
T ss_pred hhhhhccchhhcCCceeccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHH
Confidence 188999
Q ss_pred HHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 048673 46 ISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLT 125 (243)
Q Consensus 46 ~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~ 125 (243)
++++..+.+ +..++...+.|+++.|+|+..+|+++++.++..+.++|..++.++++.+|.|++.|+.+++++|+.++++
T Consensus 499 sll~~~f~~-laEi~~~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~ 577 (1391)
T KOG0065|consen 499 ALLFNLFNG-LAEIALTFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLF 577 (1391)
T ss_pred HHHHHHHHh-HHHHHHHHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 999988887 6999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCCCCC
Q 048673 126 VFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSCSPP 202 (243)
Q Consensus 126 ~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~~~~ 202 (243)
++++..++.++..+++++++|...|+.++++.++...+++||.+| +||+|++|++|++|+.| ++|+++. ||++++.
T Consensus 578 lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y-~fesl~~NEF~~~~~ 656 (1391)
T KOG0065|consen 578 LFLCQFCMSGLFRFIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMY-AFESLMSNEFHGRRW 656 (1391)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHH-HHHHHHHhhhhcccC
Confidence 999999999999999999999999999999999999999999999 99999999999999976 9999998 8876321
Q ss_pred C-----------------------------ccccc---------ccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048673 203 F-----------------------------IRELR---------IDHSGLEVWAMMPMIIGYRLVAYLSLRRMK 238 (243)
Q Consensus 203 ~-----------------------------~~g~~---------~~~~~~~~~~L~~~~i~~~~la~~~L~~~~ 238 (243)
. ++|.+ ..+.|++++++++|.++|.++..+++.+.+
T Consensus 657 ~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 657 PCSPSGPAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred CCCCCCCcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 0 11222 235799999999999999999999998876
No 8
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1e-35 Score=296.18 Aligned_cols=237 Identities=17% Similarity=0.187 Sum_probs=203.4
Q ss_pred CcccccCc----chHHHHHHhcCC-CCCCCCCChhhHHhhhcCC------------------------------------
Q 048673 1 SSLYSRKA----SEAVDYFSSIGC-SPCIAMNPAEFPIDLANGN------------------------------------ 39 (243)
Q Consensus 1 ~~~Y~G~~----~~~~~~F~~~g~-~~p~~~npad~~~~~~~~~------------------------------------ 39 (243)
|++|+|++ +++++||+++|+ +||++.|||||++|+++.+
T Consensus 981 ~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 1060 (1394)
T TIGR00956 981 QTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKA 1060 (1394)
T ss_pred EEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccC
Confidence 47899997 689999999996 9999999999999986420
Q ss_pred ---------------------------------------------------------------------ccHHHHHHHHH
Q 048673 40 ---------------------------------------------------------------------ASLLFFISVFW 50 (243)
Q Consensus 40 ---------------------------------------------------------------------~g~lf~~~~~~ 50 (243)
.|++|+.+...
T Consensus 1061 ~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~ 1140 (1394)
T TIGR00956 1061 EDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLF 1140 (1394)
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 05566666655
Q ss_pred HHHHHHHHHhcchhhhHHH-HHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHH-------HHHH
Q 048673 51 GFFPLFTATFTFPQERAML-AEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIA-------FSQN 122 (243)
Q Consensus 51 ~~~~~~~~i~~~~~er~v~-~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~-------f~~~ 122 (243)
.+. ..+.++.++.||.++ .||+.+|+|++.+|++||+++|+|+.++.+++|.+++||++|++.+++. |+.+
T Consensus 1141 ~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~ 1219 (1394)
T TIGR00956 1141 NPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLF 1219 (1394)
T ss_pred HHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHH
Confidence 544 357788888999886 8999999999999999999999999999999999999999999887655 8999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCC
Q 048673 123 MLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSC 199 (243)
Q Consensus 123 ~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~ 199 (243)
++++++..++++++|+++++++||.+.|+.+++++..++++|||+++| +||.||+|++|+||++| ++++++. ||.+
T Consensus 1220 ~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y-~~~~l~~~~~~~ 1298 (1394)
T TIGR00956 1220 WLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTY-LVQALLSTGLAD 1298 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHH-HHHHHHHHHcCC
Confidence 999999999999999999999999999999999999999999999998 99999999999999988 9999988 7754
Q ss_pred CCC----------------C------------------------c------c--------cccccchHHHHHHHHHHHHH
Q 048673 200 SPP----------------F------------------------I------R--------ELRIDHSGLEVWAMMPMIIG 225 (243)
Q Consensus 200 ~~~----------------~------------------------~------~--------g~~~~~~~~~~~~L~~~~i~ 225 (243)
.+. . | + |.+.++.|+|++++++++++
T Consensus 1299 ~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~ 1378 (1394)
T TIGR00956 1299 VPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFF 1378 (1394)
T ss_pred CeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHH
Confidence 210 0 0 1 22235689999999999999
Q ss_pred HHHHHHHHHHhhhhh
Q 048673 226 YRLVAYLSLRRMKIV 240 (243)
Q Consensus 226 ~~~la~~~L~~~~~~ 240 (243)
+ +++++.|+++.|+
T Consensus 1379 ~-~~~~~~l~~~~r~ 1392 (1394)
T TIGR00956 1379 N-IIATVFFYWLARV 1392 (1394)
T ss_pred H-HHHHHhhheEEEc
Confidence 9 7777888776543
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=6.6e-31 Score=250.38 Aligned_cols=239 Identities=19% Similarity=0.271 Sum_probs=195.6
Q ss_pred CcccccCc----chHHHHHHhcC-CCCCCCCCChhhHHhhhcCC------------------------------------
Q 048673 1 SSLYSRKA----SEAVDYFSSIG-CSPCIAMNPAEFPIDLANGN------------------------------------ 39 (243)
Q Consensus 1 ~~~Y~G~~----~~~~~~F~~~g-~~~p~~~npad~~~~~~~~~------------------------------------ 39 (243)
|+||+||. +.+++|||++| .+||+..|||||++|+++..
T Consensus 1009 qtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~ 1088 (1391)
T KOG0065|consen 1009 QTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGF 1088 (1391)
T ss_pred eEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccC
Confidence 58999998 66778999995 99999999999999998751
Q ss_pred -------------------------------------------------------------------ccHHHHHHHHHHH
Q 048673 40 -------------------------------------------------------------------ASLLFFISVFWGF 52 (243)
Q Consensus 40 -------------------------------------------------------------------~g~lf~~~~~~~~ 52 (243)
.|++|..+.+..-
T Consensus 1089 ~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~ 1168 (1391)
T KOG0065|consen 1089 STDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGP 1168 (1391)
T ss_pred CcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhh
Confidence 0556666655443
Q ss_pred HHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Q 048673 53 FPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILA 132 (243)
Q Consensus 53 ~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~ 132 (243)
.......+.+..||..+.||+.+|+||+.+|++|++++|+|+.++++.+|.++.|+++|+..++++++.+++..++..++
T Consensus 1169 ~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lY 1248 (1391)
T KOG0065|consen 1169 NNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLY 1248 (1391)
T ss_pred hhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHH
Confidence 33222344456688888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCCCCCCcc----
Q 048673 133 AQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSCSPPFIR---- 205 (243)
Q Consensus 133 ~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~~~~~~~---- 205 (243)
.+.+|+++.+++||.+.|+.+.+.++....+|||++.| .||.||.|++|+||.+| ..+++.. ++++.+..++
T Consensus 1249 f~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty-~l~gli~~~~~d~~v~c~~~e~ 1327 (1391)
T KOG0065|consen 1249 FTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTY-TLEGLISSQLGDVEVTCEDSEM 1327 (1391)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHH-HHHHHHHHHhCCCceeeecCCc
Confidence 99999999999999999999999999999999999999 89999999999999998 7999987 7765432211
Q ss_pred -------c----------------ccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048673 206 -------E----------------LRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIV 240 (243)
Q Consensus 206 -------g----------------~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~~~ 240 (243)
| +..+.....-.+..++.+++..++....++.++.
T Consensus 1328 ~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~w 1385 (1391)
T KOG0065|consen 1328 NYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFW 1385 (1391)
T ss_pred cccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHH
Confidence 1 1111111222345567777777777777776654
No 10
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.72 E-value=4.6e-16 Score=126.41 Aligned_cols=148 Identities=16% Similarity=0.106 Sum_probs=122.7
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 048673 79 KLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVL 158 (243)
Q Consensus 79 ~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~ 158 (243)
+...++++|.+...+..+++..+...+.++..|++.+ ++...++..++..++..++|..++.+.++...+. .....
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHH
Confidence 6678899999999999999999999999998898864 5677788888899999999999999998765443 34455
Q ss_pred HHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 048673 159 MTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSCSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLR 235 (243)
Q Consensus 159 ~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~~~~~~~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~ 235 (243)
.++++++|.++| .||+|+||+++++|.+| +.+++.. .+ |.+..+.|.++++|+++.+++..+++...|
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~-~~~~~r~~~~--------~~~~~~~~~~~~~L~~~~~v~~~la~~~~~ 204 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTY-SVNGLRQLIS--------GGNDGTLWQAVAVLLLILVVFLALSLLSAR 204 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHH-HHHHHHHHHh--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677778998899 89999999999999987 8999766 33 212345788999999999999999988887
Q ss_pred hhhh
Q 048673 236 RMKI 239 (243)
Q Consensus 236 ~~~~ 239 (243)
|++|
T Consensus 205 ~~~~ 208 (208)
T TIGR03062 205 RKRR 208 (208)
T ss_pred hhcC
Confidence 7664
No 11
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.67 E-value=2.7e-14 Score=119.51 Aligned_cols=195 Identities=12% Similarity=0.005 Sum_probs=138.2
Q ss_pred CCChhhHHhhhcCCccHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHH
Q 048673 26 MNPAEFPIDLANGNASLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVI 105 (243)
Q Consensus 26 ~npad~~~~~~~~~~g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i 105 (243)
.+..||+.- |++-+++...+..........-.+|+..++|-+.... ++..+++||.+.+....+++.++...+
T Consensus 54 ~~y~~f~~p------g~l~~~~~~~~~~~~~~~~~~~~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~ 126 (253)
T TIGR01291 54 VSYAAFLAA------GMVATSAMTASTFETIYATFARMRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVV 126 (253)
T ss_pred CCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455544 6665555554432211111111134444444444444 888999999999987777777665555
Q ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhc
Q 048673 106 ICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYIS 183 (243)
Q Consensus 106 ~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~is 183 (243)
.+. .|..+. .+........++..++..++|++++.+.++.+.+..+.+.+..|++++||.++| .||+|+|++.+++
T Consensus 127 ~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~n 204 (253)
T TIGR01291 127 TAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFL 204 (253)
T ss_pred HHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHC
Confidence 443 344433 445555566677888888999999999999999999999999999999999999 8999999999999
Q ss_pred hhhhhhhhhhcc-ccCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048673 184 FNNYDSYQHHCS-SDSCSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMK 238 (243)
Q Consensus 184 p~~y~~~~~l~~-~f~~~~~~~~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~ 238 (243)
|.+| ..|++.. .+ |.+..+.+.++.++.++++++..++....|++.
T Consensus 205 Plt~-~v~~~R~~~~--------g~~~~~~~~~~~~l~~~~vv~~~la~~~fr~~~ 251 (253)
T TIGR01291 205 PLAH-SIDDIRPVML--------GGPGTQVGLHLGALCLYAVVPFFISAALLRRRL 251 (253)
T ss_pred cHHH-HHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9976 8888665 32 222334567889999999999999887777654
No 12
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.65 E-value=3.2e-18 Score=138.11 Aligned_cols=152 Identities=28% Similarity=0.527 Sum_probs=137.4
Q ss_pred cHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHH
Q 048673 41 SLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFS 120 (243)
Q Consensus 41 g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~ 120 (243)
|.++.......+....+......+||..+.||+.++.|++.+|.++|.+.+++..+..+++...+.+.+.|++.+ ++.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~ 131 (210)
T PF01061_consen 54 GLIFGSIIFSFFSSISGSSISFERERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFF 131 (210)
T ss_pred eeeehhhHHhhhhhcccchhhhhhhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cch
Confidence 666666666665555566577889999999999999999999999999999999999999999999999999876 678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc
Q 048673 121 QNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS 195 (243)
Q Consensus 121 ~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~ 195 (243)
.+++..++..++..++|.+++.++++.+.+..+.+.+..+++++||.++| ++|+|++|+.+++|.+| +.|+++.
T Consensus 132 ~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~-~~~~~r~ 207 (210)
T PF01061_consen 132 LFLLILLLSILCSSGLGLLLAALFPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTY-AVEALRA 207 (210)
T ss_pred heecccccccccccccccccccchhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHH-HHHHHHH
Confidence 88888899999999999999999999999999999999999999999999 89999999999999977 9998775
No 13
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.65 E-value=5.6e-14 Score=116.29 Aligned_cols=179 Identities=15% Similarity=0.215 Sum_probs=134.3
Q ss_pred cHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHH
Q 048673 41 SLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFS 120 (243)
Q Consensus 41 g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~ 120 (243)
|.+.+.....+....... ...+|+..++|-+.... ++..++++|.+.+.+..+++..+...+.++..+.+. ..+.
T Consensus 53 G~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~P~-~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~ 127 (236)
T TIGR01247 53 GIVAMTVFNMSFFSGISV--IWDRQFGFLKEILVAPA-SRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVI 127 (236)
T ss_pred HHHHHHHHHHHHHhhhHH--HHHHHhCHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHH
Confidence 666655555443322121 11234444444444333 788899999999999999999998888888776554 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhccccC
Q 048673 121 QNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCSSDS 198 (243)
Q Consensus 121 ~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~~f~ 198 (243)
..++..++..++..++|..++...+|.+.++.+.+.+..|+..+||.++| .||+|+||+.+++|.+| +.|++..-
T Consensus 128 ~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~-~~~~~r~~-- 204 (236)
T TIGR01247 128 PTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTY-AVDGARYY-- 204 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHH-HHHHHHHH--
Confidence 44555666777889999999999999999999999999999999999999 89999999999999977 88886541
Q ss_pred CCCCCccccc-ccchHHHHHHHHHHHHHHHHHHHH
Q 048673 199 CSPPFIRELR-IDHSGLEVWAMMPMIIGYRLVAYL 232 (243)
Q Consensus 199 ~~~~~~~g~~-~~~~~~~~~~L~~~~i~~~~la~~ 232 (243)
..|.+ ..+.+.++++++++.+++..++..
T Consensus 205 -----~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 205 -----LAGVSPTFPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred -----HhCCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 12333 456788999999999999888754
No 14
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.61 E-value=9.7e-14 Score=114.67 Aligned_cols=163 Identities=12% Similarity=0.150 Sum_probs=117.8
Q ss_pred hhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 048673 65 ERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAF 144 (243)
Q Consensus 65 er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~is~~~ 144 (243)
|+..+.|-+.... ++..++++|.+...+..+.+..+.. +.+...|.+.+.+ ....+....+....+.+++.+++.+.
T Consensus 64 ~~G~l~rl~~~P~-~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~ 140 (232)
T TIGR00025 64 RYGALKRLGATPL-PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGG-ALTALTLGAVIIALGTALFAALGLVA 140 (232)
T ss_pred HhCHHHHHhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444 8899999998888888776655554 5556778876532 33344444555566677777777776
Q ss_pred c---cHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhccccCCCCCCcccccccchHHHHHHH
Q 048673 145 M---DVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRELRIDHSGLEVWAM 219 (243)
Q Consensus 145 ~---~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~~f~~~~~~~~g~~~~~~~~~~~~L 219 (243)
+ +.+.+..+.+....|+.++||.++| .||+|+||+++++|.+| ..+++..... .|.+....+.++..+
T Consensus 141 ~~~~~~~~~~~i~~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~-~~~~~r~~~~------~~~~~~~~~~~~~~l 213 (232)
T TIGR00025 141 GGTLQAEIVLAVANLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSY-ATEALRQAAT------VSVDTFGAVRDLVVV 213 (232)
T ss_pred hccccHHHHHHHHHHHHHHHHHHhheeeecccccHHHHHHHHhCcHHH-HHHHHHHHHc------CCCChhhHHHHHHHH
Confidence 4 4555588889999999999999999 89999999999999987 8888765221 233455578899999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 048673 220 MPMIIGYRLVAYLSLRRM 237 (243)
Q Consensus 220 ~~~~i~~~~la~~~L~~~ 237 (243)
+++.+++..++....||+
T Consensus 214 ~~~~~v~~~la~~~~~r~ 231 (232)
T TIGR00025 214 LAFWVALAALAAIRLRRR 231 (232)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 999999988887766543
No 15
>PRK15066 inner membrane transport permease; Provisional
Probab=99.52 E-value=6.2e-12 Score=105.50 Aligned_cols=154 Identities=19% Similarity=0.125 Sum_probs=117.6
Q ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 048673 78 YKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIV 157 (243)
Q Consensus 78 y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~ 157 (243)
.++..+.++|.+.......++.++...+.....|.+.+ .........++........|+.++.+.++.+....+.+.+
T Consensus 101 ~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~ 178 (257)
T PRK15066 101 VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTFV 178 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 37888999999988877777777776666665566543 2233333334434444455899998888888889999999
Q ss_pred HHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhccccCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 048673 158 LMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLR 235 (243)
Q Consensus 158 ~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~~f~~~~~~~~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~ 235 (243)
..|++.+||.+.| ++|+|+||+.+++|.+| ..|++..-+. |.+..+.|.++.+++++++++..++....|
T Consensus 179 ~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~-~v~~~R~~~~-------g~~~~~~~~~l~~l~~~~~v~~~la~~~~~ 250 (257)
T PRK15066 179 LTPLTYLGGVFYSISLLPPFWQGVSKLNPIVY-MVNAFRYGFL-------GISDVPLWLAFAVLLVFIVVLYLLAWYLLE 250 (257)
T ss_pred HHHHHHHcchhccHHhChHHHHHHHHHCcHHH-HHHHHHHHHc-------CCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 89999999999999976 8888765211 222234688999999999999999998888
Q ss_pred hhhhhh
Q 048673 236 RMKIVT 241 (243)
Q Consensus 236 ~~~~~~ 241 (243)
|+++-|
T Consensus 251 r~~~~~ 256 (257)
T PRK15066 251 RGRGLR 256 (257)
T ss_pred hhcccC
Confidence 777655
No 16
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.45 E-value=3.1e-11 Score=101.02 Aligned_cols=181 Identities=11% Similarity=0.146 Sum_probs=127.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHH
Q 048673 41 SLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFS 120 (243)
Q Consensus 41 g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~ 120 (243)
|++-+......+.... -....+|+....|-+.... ++..+.++|.+.+....+++..+...+... .|.+.+..+..
T Consensus 65 Gi~~~~~~~~~~~~~~--~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l 140 (253)
T TIGR03861 65 GLCCMILLFNGMQSSL--SMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYV 140 (253)
T ss_pred HHHHHHHHHHHHHhhh--HhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHH
Confidence 6665555544433321 1122344445555555554 788899999999988888877665555543 36655433444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--Cc---hHHHHHHHhhchhhhhhhhhhcc
Q 048673 121 QNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KG---PFFMSWLRYISFNNYDSYQHHCS 195 (243)
Q Consensus 121 ~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~m---p~~~~wi~~isp~~y~~~~~l~~ 195 (243)
......++..+...++|+++|.++++.+.+..+.+.+..|++.+||.+.| ++ |+|+||+.+++|..| ..|++..
T Consensus 141 ~~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~-~i~~~R~ 219 (253)
T TIGR03861 141 SVLPALVLVAFMLGALGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTH-AVELVRF 219 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHH-HHHHHHH
Confidence 44555566778888999999999999988999999999999999999998 44 899999999999965 7888654
Q ss_pred ccCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 048673 196 SDSCSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRR 236 (243)
Q Consensus 196 ~f~~~~~~~~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~ 236 (243)
-+ .|. ..|.++..+.++.+++..++....||
T Consensus 220 ~~-------~g~---~~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 220 AL-------YGQ---LNLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred HH-------hCC---cchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 21 111 13667788888888888888766554
No 17
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=99.40 E-value=1.7e-11 Score=94.74 Aligned_cols=128 Identities=13% Similarity=0.022 Sum_probs=96.3
Q ss_pred hhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHH---HHHHHHHHHHHHHHHHHH
Q 048673 63 PQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQ---NMLTVFLCILAAQGLGLI 139 (243)
Q Consensus 63 ~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~---~~~~~~l~~l~~~~lg~~ 139 (243)
.+|+..++|-+.... ++..++++|.+......+++..+..++.+. .|.+.+ +.+.. .++...+.......++..
T Consensus 15 dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~-~~~~~~~~~~~~~~l~~~~f~~l~~~ 91 (152)
T TIGR01248 15 DREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFR-NGVAAALLFLLIPSIFGIAFAALVMA 91 (152)
T ss_pred HHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777766 889999999999999999998888888854 488775 33333 333334445566666666
Q ss_pred HHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc
Q 048673 140 IGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS 195 (243)
Q Consensus 140 is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~ 195 (243)
++...++.+ +....+.+..|+.++||.++| +||+|+||+.+++|.+| +.|++..
T Consensus 92 ~a~~~~~~~-~~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~-~~~~~R~ 147 (152)
T TIGR01248 92 MALRKEGRF-AMEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISP-AIEACAD 147 (152)
T ss_pred HHHHcCCHH-HHHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccH-HHHHHHH
Confidence 665555554 444568888999999999999 99999999999999987 8888664
No 18
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=99.39 E-value=9.8e-11 Score=98.34 Aligned_cols=190 Identities=18% Similarity=0.265 Sum_probs=134.5
Q ss_pred cHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHH
Q 048673 41 SLLFFISVFWGFFPLFTATFTFPQERAMLAEERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFS 120 (243)
Q Consensus 41 g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~ 120 (243)
|.+.+...+.........+.. .+|+..+.|=..+.. +...+++++.+.......+...+...+..+..|.... +...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~sp~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~-~~~~ 169 (286)
T COG0842 93 GVILMSVLFSGIFSFSSALFR-EREFGTLERLLVSPV-SRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFL-GSLL 169 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-HHhhCcHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CcHH
Confidence 444444444433332222221 234444455555544 4355677777777777666666666676677774433 5566
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcccc
Q 048673 121 QNMLTVFLCILAAQGLGLIIG-VAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCSSD 197 (243)
Q Consensus 121 ~~~~~~~l~~l~~~~lg~~is-~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~~f 197 (243)
.......+..+...++|.+++ ...++.+.+..+.+....|+.+++|.++| .+|+|+||++++.|.+| +.+++...+
T Consensus 170 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~-~~~~~~~~~ 248 (286)
T COG0842 170 LLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTY-AIDALRYVY 248 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHH-HHHHHHHHH
Confidence 677777778888888999666 36677888888998999999999999999 89999999999999987 888877622
Q ss_pred CCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048673 198 SCSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIV 240 (243)
Q Consensus 198 ~~~~~~~~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~~~ 240 (243)
. .|...++.+.++.+++++.+++.+++...+|+++++
T Consensus 249 ~------~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 249 L------GGWRNDGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred h------CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1 122333478899999999999999999888887764
No 19
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.93 E-value=5.3e-07 Score=74.92 Aligned_cols=154 Identities=14% Similarity=0.051 Sum_probs=100.4
Q ss_pred HHHHHHhcCCCc--------chHHHHHHHHHHHhhHHHHHHHHH--HHHHHHhcCCC---CcHHHHHHHHHHHHHHHHHH
Q 048673 67 AMLAEERSVDMY--------KLSAYFSARNISDLPLDLILPIIV--LVIICVMVGLR---PSYIAFSQNMLTVFLCILAA 133 (243)
Q Consensus 67 ~v~~rE~~~~~y--------~~~~y~lak~~~~~~~~~~~~~~~--~~i~y~~~gl~---~~~~~f~~~~~~~~l~~l~~ 133 (243)
..+.|||++|.. ++..+.+||.+.......+..... ........|.+ .+.+.+....+..++...+.
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 345677777774 788999999999865544333211 11122223332 24556555556667777788
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC-Cc--hHHHHHHHhhchhhhhhhhhhccccCCCCCCccccccc
Q 048673 134 QGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ-KG--PFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRELRID 210 (243)
Q Consensus 134 ~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p-~m--p~~~~wi~~isp~~y~~~~~l~~~f~~~~~~~~g~~~~ 210 (243)
.++|.++|++++|...|..++...... ++.|.... ++ |++.+|+.+++|.+|+ .+. . +| .+
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~l~~~~~~~~~~~l~~~sp~~~~-~~~-~----------~g-~i- 214 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCFL--FYFGFDGLASLLWGGSAYTISELGLSYHY-ESI-S----------RG-VI- 214 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHHHhhhcchhHHHHHHHcCHHHHH-HHH-H----------cC-cc-
Confidence 999999999999888887665544333 22332222 44 8999999999998663 333 2 22 11
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhh
Q 048673 211 HSGLEVWAMMPMIIGYRLVAYLSLRRM 237 (243)
Q Consensus 211 ~~~~~~~~L~~~~i~~~~la~~~L~~~ 237 (243)
.+.|+.....+++++..++...+++|
T Consensus 215 -~~~~~v~~~~~~~~~l~l~~~~~~~r 240 (240)
T TIGR03518 215 -DSRDVIYFLSITVLFLALTKLQLKSR 240 (240)
T ss_pred -cHhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 25788899999999999998777664
No 20
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=98.66 E-value=4.2e-09 Score=90.45 Aligned_cols=156 Identities=21% Similarity=0.286 Sum_probs=0.0
Q ss_pred cchhhhHHHHHHh--cCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHHHHHHHHH
Q 048673 61 TFPQERAMLAEER--SVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVG---LRPSYIAFSQNMLTVFLCILAAQG 135 (243)
Q Consensus 61 ~~~~er~v~~rE~--~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~g---l~~~~~~f~~~~~~~~l~~l~~~~ 135 (243)
...+||.--.+|+ ..|. ++..|.++|.+......++..++...+ ..| ++. +++...++..++..++..+
T Consensus 181 ~i~~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~--~~~~~~~l~~~l~~~~~~~ 254 (344)
T PF12698_consen 181 SIVEEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPF--GNFLLLLLLLLLFSLAFIS 254 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCcc--cchHHHHHHHHHHHHHHHH
Confidence 3455655444444 5555 888999999999999888888776664 334 443 3556667888888999999
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhccccCCCCCCcccccccchH
Q 048673 136 LGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRELRIDHSG 213 (243)
Q Consensus 136 lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~~f~~~~~~~~g~~~~~~~ 213 (243)
++.+++.++++...+..+..++..+....+|..+| .+|++++++.++.|..| ..+++.+- ..|. ..+.+
T Consensus 255 ~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~-~~~~~~~~-------~~~~-~~~~~ 325 (344)
T PF12698_consen 255 FGFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYW-FIQGLRNI-------IYGD-WSEIW 325 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHH-HHHHHHHH-------HHhc-HHHHH
Confidence 99999999999999988888888877777777787 79999999999999965 66664441 1233 33467
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 048673 214 LEVWAMMPMIIGYRLVAY 231 (243)
Q Consensus 214 ~~~~~L~~~~i~~~~la~ 231 (243)
.+++.++++++++.+++.
T Consensus 326 ~~~~~l~~~~~v~~~l~~ 343 (344)
T PF12698_consen 326 ISLIILLLFAVVYLLLAI 343 (344)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 888899999888887764
No 21
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=98.41 E-value=2.2e-05 Score=66.06 Aligned_cols=162 Identities=15% Similarity=0.158 Sum_probs=97.6
Q ss_pred HHHHhcCCC--------cchHHHHHHHHHHHhhHHH---HHHHHHH---HHHHHhcCCCCcHHHHHHHHHHHHHHHH---
Q 048673 69 LAEERSVDM--------YKLSAYFSARNISDLPLDL---ILPIIVL---VIICVMVGLRPSYIAFSQNMLTVFLCIL--- 131 (243)
Q Consensus 69 ~~rE~~~~~--------y~~~~y~lak~~~~~~~~~---~~~~~~~---~i~y~~~gl~~~~~~f~~~~~~~~l~~l--- 131 (243)
+.+|+++|. .++..++++|.+......+ +...+.. .......|.+.+...+...........+
T Consensus 90 ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (277)
T PF12679_consen 90 IAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAVL 169 (277)
T ss_pred HHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 445666665 4788999999999877632 2111111 1122234555666665555544444444
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCC-C-CchHHH-----HHHHhhchhhhhhhhhhccccCCCCCCc
Q 048673 132 AAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFI-Q-KGPFFM-----SWLRYISFNNYDSYQHHCSSDSCSPPFI 204 (243)
Q Consensus 132 ~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~-p-~mp~~~-----~wi~~isp~~y~~~~~l~~~f~~~~~~~ 204 (243)
+..++++++|++++|...|...+..+............ . .-+.+. +.+.+.+|.++ ++....+-.
T Consensus 170 ~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~------ 241 (277)
T PF12679_consen 170 VFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSP--FNLLIGSIL------ 241 (277)
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHH--HHHHHHHhh------
Confidence 45899999999999988888877766555543333322 1 112222 44577788764 333222100
Q ss_pred cccc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048673 205 RELR-IDHSGLEVWAMMPMIIGYRLVAYLSLRRMK 238 (243)
Q Consensus 205 ~g~~-~~~~~~~~~~L~~~~i~~~~la~~~L~~~~ 238 (243)
.+.+ ....|.+.+.++++++++..++++..+||+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~v~l~la~~~F~rrD 276 (277)
T PF12679_consen 242 GGGFVWLSTWPSLLILLAYTLVFLALAYYRFQRRD 276 (277)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0100 134688899999999999999997776654
No 22
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.41 E-value=0.00011 Score=61.75 Aligned_cols=150 Identities=17% Similarity=0.092 Sum_probs=111.4
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 048673 79 KLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVL 158 (243)
Q Consensus 79 ~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~ 158 (243)
+++.+.+++++.+..-..+..++.....-+..+.+ + .++........+..+.+.++|+++|.++--..=-..+...+.
T Consensus 106 p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s-~~~l~~~~~l~~l~l~~~g~~l~~a~l~v~fRD~~~i~~~v~ 183 (263)
T COG1682 106 PPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-S-WHWLLLLPALLLLILFSVGLGLILASLGVRFRDLGQILGVVL 183 (263)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-c-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcccHHHHHHHHH
Confidence 77888899999988776666665555554544443 3 566677777788888888999999988766555556667778
Q ss_pred HHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHH
Q 048673 159 MTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSCSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLR 235 (243)
Q Consensus 159 ~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~~~~~~~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~ 235 (243)
.+++..+|..+| .+|+.++++.++||+. |..|.+.. -+. |... .+.++....++.++...+++...+
T Consensus 184 ~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~-~iie~~R~~~~~-------~~~~--~~~~~~~~~~~~li~l~vg~~~~~ 253 (263)
T COG1682 184 QLLFFLSPIIYPVSNLPEQLRELVLLNPLT-HIIESFRAPLLG-------GDVP--DLHLLVYILLLTLILLFVGLLLFR 253 (263)
T ss_pred HHHHHhCceeeehhhccHHHHHHHHHCcHH-HHHHHHHHHHhC-------CCcc--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999998 8999999999999995 58888776 321 1111 355666777777777888887877
Q ss_pred hhhhh
Q 048673 236 RMKIV 240 (243)
Q Consensus 236 ~~~~~ 240 (243)
+.+|+
T Consensus 254 ~~~~~ 258 (263)
T COG1682 254 KFRKR 258 (263)
T ss_pred HHHhh
Confidence 77765
No 23
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=98.11 E-value=0.00076 Score=56.85 Aligned_cols=108 Identities=8% Similarity=-0.045 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCC
Q 048673 123 MLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSC 199 (243)
Q Consensus 123 ~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~ 199 (243)
....++..+.+.++|++.|.+..-..-...+......+++..||.+.| .+|++++++.+.||+.+ ..|+..+ -+.
T Consensus 152 ~~~~ll~~l~~~glglils~l~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~~-~ie~~R~~~~~- 229 (264)
T PRK15176 152 FEGMVIAWLLGLSFGYFCDALSERFPLVYKAVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLLH-ANEIVREGMFE- 229 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHHH-HHHHHHHHHhc-
Confidence 344455666677888888766544333445556777788889999988 88999999999999955 8888776 332
Q ss_pred CCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048673 200 SPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIV 240 (243)
Q Consensus 200 ~~~~~~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~~~ 240 (243)
|.. ..+.+.....++.++..+++....|+.|.+
T Consensus 230 ------~~~--~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~ 262 (264)
T PRK15176 230 ------GYH--SLYLEPFYPLAFSATLFLAGLIFHLICDTE 262 (264)
T ss_pred ------CcC--ccccChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 211 122355677788888888887777766654
No 24
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=97.56 E-value=0.0063 Score=51.29 Aligned_cols=170 Identities=14% Similarity=0.112 Sum_probs=111.6
Q ss_pred HHHHhcCCC--------cchHHHHHHHHHHHhhHHHHHHHHHH---HHHHHhcCCCCcH---HHHHHHHHHHHHHHHHHH
Q 048673 69 LAEERSVDM--------YKLSAYFSARNISDLPLDLILPIIVL---VIICVMVGLRPSY---IAFSQNMLTVFLCILAAQ 134 (243)
Q Consensus 69 ~~rE~~~~~--------y~~~~y~lak~~~~~~~~~~~~~~~~---~i~y~~~gl~~~~---~~f~~~~~~~~l~~l~~~ 134 (243)
+.+|+++|. .++..-++||.+.......+...+.. .......|...+. .....+.....+......
T Consensus 83 is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (278)
T COG1277 83 ISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGLVLL 162 (278)
T ss_pred hhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHH
Confidence 456676666 46778889999998766555555444 2234445554432 345677788888899999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCC-------CchHHHHHHHhhchhhhhhhhhhccccC--CCCCCc-
Q 048673 135 GLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQ-------KGPFFMSWLRYISFNNYDSYQHHCSSDS--CSPPFI- 204 (243)
Q Consensus 135 ~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p-------~mp~~~~wi~~isp~~y~~~~~l~~~f~--~~~~~~- 204 (243)
+++.+++...++...+...+........+..+.... ...+..+.+...+|..+ ..+....-+. ...+..
T Consensus 163 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 241 (278)
T COG1277 163 SISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPLYL-LAELAFTILLQSGFSDSIL 241 (278)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhccCHHHH-HHHHhhhhccccccccccc
Confidence 999999999999888888877776666655544332 11125678889999965 3443332111 001000
Q ss_pred -ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 048673 205 -RELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKI 239 (243)
Q Consensus 205 -~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~~ 239 (243)
.+......|.+..++.++.+++..++++..+||+-
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~di 277 (278)
T COG1277 242 TLNESLLLAWFNILILIIYILIFLSIAYLIFKRRDI 277 (278)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 11122346889999999999999999888877753
No 25
>COG1511 Predicted membrane protein [Function unknown]
Probab=97.07 E-value=0.0097 Score=57.70 Aligned_cols=144 Identities=17% Similarity=0.176 Sum_probs=101.3
Q ss_pred hcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Q 048673 73 RSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKI 152 (243)
Q Consensus 73 ~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~ 152 (243)
...+.+....+++++..+.+-....+..+-..-.+.+.|.... .. +.++...+...++.+.+-....+++. ..+..
T Consensus 610 ~~~~~~~~~~~~~~~~~~~i~~~~~q~~i~~~~~~~~l~~~~~-~~-~~~~~~~i~~s~~f~~ii~~lv~~~g--~~g~~ 685 (780)
T COG1511 610 LSDGILNGRVYFFGKNLVFITLGLIQSLIVTLGLVLLLGVEVK-SP-LLLVLFAIFSSVAFMIIIYLLVSLFG--NPGKF 685 (780)
T ss_pred ccccccchHHHHHHhhhHHHHHHHHHHHHHHhcCeEEEEeccC-ch-hHHHHHHHHHHHHHHHHHHHHHHHhC--cchHH
Confidence 5666667788889999999888888887766666666666553 23 34444455556666666666666666 44556
Q ss_pred HHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhccccCCCCCCcccccccchHHHHHHHHHHHHHHHH
Q 048673 153 LASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRELRIDHSGLEVWAMMPMIIGYRL 228 (243)
Q Consensus 153 ~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~~f~~~~~~~~g~~~~~~~~~~~~L~~~~i~~~~ 228 (243)
++.++++.+...+|-..| ..|.+++++....|++| ++..+.. .+.|......|.+.+++.++.+++++
T Consensus 686 i~ivllvlq~~~~~G~~pi~~~~~~~~~l~~~lp~ty-~v~~~r~-------~~~~~~~~~~~~~~~~~~~~~i~~~~ 755 (780)
T COG1511 686 IAIVLLVLQIAGSGGTFPIQLSPSFFQILHPALPLTY-AVNGFRE-------VIGGPIPSNLWSGLLALIGFLILFII 755 (780)
T ss_pred HHHHHHHHHHhccccccchhccHHHHHHHHHhccHHH-HHHHhHH-------hhccCchHHHhhhHHHHHHHHHHHHH
Confidence 666777778888888888 78999999999999988 7666333 23344455677777777777777766
No 26
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=96.98 E-value=0.086 Score=43.45 Aligned_cols=88 Identities=9% Similarity=-0.056 Sum_probs=65.4
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhccccCCCCCCccc-ccccchHHHHHHHHH
Q 048673 145 MDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRE-LRIDHSGLEVWAMMP 221 (243)
Q Consensus 145 ~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~~f~~~~~~~~g-~~~~~~~~~~~~L~~ 221 (243)
.|+ .|+.+.........+.||...| -.|+|.+-+--..|+.| ...- +....-| .+.++.+++.++.++
T Consensus 173 wt~-~as~l~~~~~~l~~f~sG~l~PL~~fP~~v~~il~ftPFpy-~~y~-------P~~llvGk~s~~~il~al~v~~~ 243 (268)
T COG4587 173 WTE-RASSLGKFWWLLYAFLSGSLAPLAFFPDWVRAILAFTPFPY-LLYT-------PVMLLVGKYSGAQILKALLVQIG 243 (268)
T ss_pred hcc-chhhHHHHHHHHHHHhccccchHHhChHHHHHHHHhCCchh-hhcc-------HHHHHhccccHHHHHHHHHHHHH
Confidence 444 4677777777788999999999 78999999999999976 2221 0000112 234568999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 048673 222 MIIGYRLVAYLSLRRMKIVT 241 (243)
Q Consensus 222 ~~i~~~~la~~~L~~~~~~~ 241 (243)
|..++.++.-+..||-.++-
T Consensus 244 Wl~im~~l~~~lWrrgl~~y 263 (268)
T COG4587 244 WLLIMWLLSRWLWRRGLKRY 263 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999988888876653
No 27
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=96.92 E-value=0.059 Score=47.90 Aligned_cols=134 Identities=11% Similarity=0.016 Sum_probs=87.5
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCC--cH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Q 048673 79 KLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRP--SY--IAFSQNMLTVFLCILAAQGLGLIIGVAFMDVKKAKILA 154 (243)
Q Consensus 79 ~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~--~~--~~f~~~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~ 154 (243)
++..+++-|.+......++.++.++.+. ...+.+. .. +.|..++....+...+.....-.+.++.+.+- ..+.
T Consensus 240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i~~~~--~~~~ 316 (382)
T PF12051_consen 240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISIIGPPF--MPFW 316 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccch--HHHH
Confidence 7788999999999888888888888887 5555544 22 44777777766666544443333334433222 3333
Q ss_pred HHHHHHHHHhhhhCCC--CchHHHHHHHhhchhhhhhhhhhcc-ccCCCCCCcccccccchHHHHHHHHHHHHHH
Q 048673 155 SIVLMTSMLSGGFFIQ--KGPFFMSWLRYISFNNYDSYQHHCS-SDSCSPPFIRELRIDHSGLEVWAMMPMIIGY 226 (243)
Q Consensus 155 ~~~~~~~~l~sG~~~p--~mp~~~~wi~~isp~~y~~~~~l~~-~f~~~~~~~~g~~~~~~~~~~~~L~~~~i~~ 226 (243)
.++.+...+-++ +.| -.|++.||.+-. |++ .++|++.. -|+ +.+ .+..+++++|++|.++-
T Consensus 317 ll~wvi~nv~~~-~~P~el~p~fyr~gya~-P~~-n~~~~~r~I~fd-------~~~-~~lg~n~gil~aw~~v~ 380 (382)
T PF12051_consen 317 LLFWVILNVSST-FYPLELSPGFYRYGYAM-PMH-NIYEGLRVIFFD-------TCK-GQLGRNYGILFAWIVVN 380 (382)
T ss_pred HHHHHHHhcccc-cCChhhCccHHHHhhhh-hHH-HHHHHHHHheeC-------CCc-ccccchHHHHHHHHHHH
Confidence 334444444553 456 679999998888 995 49999887 442 111 34667899999998763
No 28
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=96.91 E-value=0.18 Score=53.98 Aligned_cols=174 Identities=10% Similarity=0.020 Sum_probs=104.1
Q ss_pred HHHHhcchhhhHHHHHHhcCCC-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Q 048673 56 FTATFTFPQERAMLAEERSVDM-YKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQ 134 (243)
Q Consensus 56 ~~~i~~~~~er~v~~rE~~~~~-y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~ 134 (243)
...+.....||..-.||.-.-| -+.+.|.++..+..+....+..++..++... +--....+++..++..+++.+...
T Consensus 668 ~~lv~~iV~EKE~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~~--~~~~~~s~~~~lfl~~~~y~~s~I 745 (2272)
T TIGR01257 668 SMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIMH--GRILHYSDPFILFLFLLAFSTATI 745 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CceeecCChHHHHHHHHHHHHHHH
Confidence 4566666778877777765433 1578899999998877666655554444322 211122345667777788999999
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhh--CCC-CchHHHHH-HHhhchhhhhhhh--hhcc-ccCCCCC----C
Q 048673 135 GLGLIIGVAFMDVKKAKILASIVLMTSMLSGGF--FIQ-KGPFFMSW-LRYISFNNYDSYQ--HHCS-SDSCSPP----F 203 (243)
Q Consensus 135 ~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~--~~p-~mp~~~~w-i~~isp~~y~~~~--~l~~-~f~~~~~----~ 203 (243)
.++.++|+++.+...|..++.++.....+--.+ .+. .++...+| ++-++|..+ ++. .+.. |-.+... .
T Consensus 746 ~~~fliS~fFska~~A~~~~~li~f~~~lp~~~~~~~~~~~~~~~~~~~sL~sp~af-~~g~~~i~~~e~~~~G~~w~n~ 824 (2272)
T TIGR01257 746 MQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTADLKTAVSLLSPVAF-GFGTEYLVRFEEQGLGLQWSNI 824 (2272)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHhcCHHHH-HHHHHHHHHHhhhCCCcccccc
Confidence 999999999999999999888877655443222 223 56655555 455556543 432 2222 2211100 0
Q ss_pred c----ccccccchHHHHHHHHHHHHHHHHHHHHH
Q 048673 204 I----RELRIDHSGLEVWAMMPMIIGYRLVAYLS 233 (243)
Q Consensus 204 ~----~g~~~~~~~~~~~~L~~~~i~~~~la~~~ 233 (243)
. .+.++ .....+++|+.=++++.+++++.
T Consensus 825 ~~~~~~~d~~-s~~~~~~ml~~d~~lY~lL~~Yl 857 (2272)
T TIGR01257 825 GNSPLEGDEF-SFLLSMKMMLLDAALYGLLAWYL 857 (2272)
T ss_pred cccccCCCCc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01111 23445667777777777777654
No 29
>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function.
Probab=96.71 E-value=0.26 Score=40.44 Aligned_cols=159 Identities=16% Similarity=0.095 Sum_probs=93.2
Q ss_pred HHHHhcCCCc--------chHHHHHHHHHHH-hhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 048673 69 LAEERSVDMY--------KLSAYFSARNISD-LPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLI 139 (243)
Q Consensus 69 ~~rE~~~~~y--------~~~~y~lak~~~~-~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~ 139 (243)
+.++-++|.. +...+.+.+-+.. ....+..++..........+.+.+..++..+.+.+++..+...++..+
T Consensus 54 i~~~I~~G~ld~~LlrPv~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~i~~~~~~~~~~~~~l~~g~li~~~i~~~ 133 (229)
T PF06182_consen 54 ISEDIRTGELDQYLLRPVNYLFYLLFRNLGPSSLGFLIVGIILLIYALIQLGIPWSPLNILLFILSLLLGFLINFSIFFI 133 (229)
T ss_pred HhhhhcCCceeeehhcCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555552 4445555554443 233333444333334445567777778887887777777777777777
Q ss_pred HHHhcccHHHHHHHHHHHHHHHHHhhhhCCC--CchHHHHHHHhh-chhhhhhhhhhccccCCCCCCcccccccchHHHH
Q 048673 140 IGVAFMDVKKAKILASIVLMTSMLSGGFFIQ--KGPFFMSWLRYI-SFNNYDSYQHHCSSDSCSPPFIRELRIDHSGLEV 216 (243)
Q Consensus 140 is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p--~mp~~~~wi~~i-sp~~y~~~~~l~~~f~~~~~~~~g~~~~~~~~~~ 216 (243)
++.++==.+....+. .....+++|...| -.|+|+|++-.. .|+.+ .... |.....|.. +....+
T Consensus 134 ~~~laFw~~~~~~~~---~i~~~l~sg~~~Pl~~fp~~~~~il~~~lPf~~-i~~~-------P~~~llg~~--~~~~~~ 200 (229)
T PF06182_consen 134 IGLLAFWFTESWGLS---YIFYSLLSGAIYPLSIFPGWIQFILTFILPFAY-ISYV-------PARILLGKI--SPLFIL 200 (229)
T ss_pred HHHHHHHHhcchHHH---HHHHHHHHHHHccHHHhHHHHHHHHHHHhhHHH-HHHH-------HHHHHcCCC--cHHHHH
Confidence 776543333333333 3345558999999 789999985555 99975 2211 000011211 124555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 048673 217 WAMMPMIIGYRLVAYLSLRRMKIV 240 (243)
Q Consensus 217 ~~L~~~~i~~~~la~~~L~~~~~~ 240 (243)
..-.++++++.+++....|+-.||
T Consensus 201 ~~q~~~~~v~~~l~~~~w~~glrk 224 (229)
T PF06182_consen 201 LIQAIWILVLFLLSRLLWRKGLRK 224 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555788888888888777776655
No 30
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=96.43 E-value=0.053 Score=44.24 Aligned_cols=91 Identities=16% Similarity=0.293 Sum_probs=65.1
Q ss_pred HHHHhcCCCc--------chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048673 69 LAEERSVDMY--------KLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLII 140 (243)
Q Consensus 69 ~~rE~~~~~y--------~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~i 140 (243)
|.+|+++|.. ++.+.+++|.+.......+..++...+...+.|.+. .+...+.+.+.+.+.....+|-+.
T Consensus 68 f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~--~~~~~~~~~l~lgt~gl~~igtl~ 145 (215)
T PF03379_consen 68 FAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPI--SSWPLLLLSLLLGTLGLAAIGTLL 145 (215)
T ss_pred HHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8888888873 567899999999988777776666666666777765 445566667777777888888888
Q ss_pred HHhcccHHHHHHHHHHHHHHH
Q 048673 141 GVAFMDVKKAKILASIVLMTS 161 (243)
Q Consensus 141 s~~~~~~~~a~~~~~~~~~~~ 161 (243)
++++-+......+.++...|+
T Consensus 146 aal~~~~r~~~~Ll~lL~lPl 166 (215)
T PF03379_consen 146 AALAAGARGREILLPLLLLPL 166 (215)
T ss_pred HHHHHhccccCHHHHHHHHHH
Confidence 877665555555555555543
No 31
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=96.30 E-value=0.37 Score=51.67 Aligned_cols=167 Identities=14% Similarity=0.016 Sum_probs=101.0
Q ss_pred chhhhHHHHH--HhcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 048673 62 FPQERAMLAE--ERSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMV--GLRPSYIAFSQNMLTVFLCILAAQGLG 137 (243)
Q Consensus 62 ~~~er~v~~r--E~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~--gl~~~~~~f~~~~~~~~l~~l~~~~lg 137 (243)
..+||..=.| ..-+|. ++.+|-++..+.++...++..+++.++++..- ++. +..++...+++++++.++..-+.
T Consensus 1701 ~V~ER~skaK~lQ~vSGv-~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~-~~~~l~~~~lll~lyG~a~ip~t 1778 (2272)
T TIGR01257 1701 LIQERVNKAKHLQFISGV-SPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYT-SPENLPALVALLMLYGWAVIPMM 1778 (2272)
T ss_pred eehHHhhhHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhc-CcchHHHHHHHHHHHHHHHHHHH
Confidence 3566665544 345666 78999999999999888777777766654332 222 22456666778899999999999
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHH---HHhh----hhCCC-----CchHHHHHHHhhchhhhhhhh-hhcc--ccC----
Q 048673 138 LIIGVAFMDVKKAKILASIVLMTS---MLSG----GFFIQ-----KGPFFMSWLRYISFNNYDSYQ-HHCS--SDS---- 198 (243)
Q Consensus 138 ~~is~~~~~~~~a~~~~~~~~~~~---~l~s----G~~~p-----~mp~~~~wi~~isp~~y~~~~-~l~~--~f~---- 198 (243)
+++|.++++...|......+.... .... +...+ .....++|+..+.|. | ++. ++.. ...
T Consensus 1779 Yl~SflF~~~~~A~~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~-f-~lg~gl~~l~~~~~~~~ 1856 (2272)
T TIGR01257 1779 YPASFLFDVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPH-F-CLGRGLIDLALSQAVTD 1856 (2272)
T ss_pred HHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCch-h-hhHHHHHHHHHhHHHHH
Confidence 999999999988876544333221 1111 12212 234678999999998 6 554 3322 100
Q ss_pred -----CCCCCcccccccchHHHHHHHHHHHHHHHHHHHH
Q 048673 199 -----CSPPFIRELRIDHSGLEVWAMMPMIIGYRLVAYL 232 (243)
Q Consensus 199 -----~~~~~~~g~~~~~~~~~~~~L~~~~i~~~~la~~ 232 (243)
+.....+-.+.+.....++.|++.++++.++..+
T Consensus 1857 ~~~~~~~~~~~~~~~~~~~g~~ll~m~~~~iv~flLl~~ 1895 (2272)
T TIGR01257 1857 VYAQFGEEHSANPFQWDLIGKNLVAMAVEGVVYFLLTLL 1895 (2272)
T ss_pred HHHhhcccccCCccchhhccHHHHHHHHHHHHHHHHHHH
Confidence 0000000011222345677777777777666544
No 32
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=95.75 E-value=0.015 Score=41.79 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=30.6
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 048673 206 ELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMKIVT 241 (243)
Q Consensus 206 g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~~~~ 241 (243)
|+..++.|+|++++++|+++|.++.++.+++.+..+
T Consensus 42 ~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~~~ 77 (103)
T PF06422_consen 42 GYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKFEK 77 (103)
T ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 445678999999999999999999999998876443
No 33
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=95.26 E-value=0.37 Score=39.19 Aligned_cols=92 Identities=15% Similarity=0.211 Sum_probs=64.7
Q ss_pred HHHHHhcCCCc--------chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 048673 68 MLAEERSVDMY--------KLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLI 139 (243)
Q Consensus 68 v~~rE~~~~~y--------~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~ 139 (243)
.|.+|+++|.. +....+++|.+.+.....+.-.+.....-.+.|++.. +.....+.+.+.+.....+|-+
T Consensus 64 lF~~d~e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~~--~~~~l~l~LllGt~~Ls~igtl 141 (211)
T TIGR01190 64 LFRDDFEDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDVP--AWGALALTLLLGTPALSFLGAI 141 (211)
T ss_pred HHHHHHhCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch--HHHHHHHHHHHHHHHHHHHHHH
Confidence 37889998863 6788899999999877776666666666667777654 3356677777788888888888
Q ss_pred HHHhcccHHHHHHHHHHHHHHH
Q 048673 140 IGVAFMDVKKAKILASIVLMTS 161 (243)
Q Consensus 140 is~~~~~~~~a~~~~~~~~~~~ 161 (243)
.++++-+......+.++...|+
T Consensus 142 ~aALt~g~r~~~~Ll~lL~lPl 163 (211)
T TIGR01190 142 GAALTVGLKRGGLLLSLLVLPL 163 (211)
T ss_pred HHHHHHhccCCchHHHHHHHHH
Confidence 8887665444444444444443
No 34
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=94.09 E-value=2.9 Score=34.62 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=41.8
Q ss_pred HHHhcCCCc--------chHHHHHHHHHHHhhHHHHHHHHHHHHHHH---hcCCC-CcHHHHHHHHHHHHHHHHHHHHHH
Q 048673 70 AEERSVDMY--------KLSAYFSARNISDLPLDLILPIIVLVIICV---MVGLR-PSYIAFSQNMLTVFLCILAAQGLG 137 (243)
Q Consensus 70 ~rE~~~~~y--------~~~~y~lak~~~~~~~~~~~~~~~~~i~y~---~~gl~-~~~~~f~~~~~~~~l~~l~~~~lg 137 (243)
++|++++.| +....++||.+.-....++..++..+..+. ..+.. .+........+...+..+....+.
T Consensus 64 ~~E~~~~~~k~lls~pvs~~~~~~aK~l~~~~~~~~s~~i~~i~~~~~g~l~~~~~~~~~~~~~~~l~~~i~sl~~i~l~ 143 (241)
T TIGR03732 64 KKEKKASNYRAILSLPVDLKKVWIAKILVIAIYLLISCIILFIGLVLIGFVIPPSNISIGQALLASLLIWLTSLWQIPLC 143 (241)
T ss_pred HHHHhccCcceEeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 466665554 677888999998776666665555432222 22321 223344444455555566666666
Q ss_pred HHHHHh
Q 048673 138 LIIGVA 143 (243)
Q Consensus 138 ~~is~~ 143 (243)
++++--
T Consensus 144 l~ls~~ 149 (241)
T TIGR03732 144 LFLARK 149 (241)
T ss_pred HHHHHH
Confidence 666633
No 35
>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=94.04 E-value=4.3 Score=36.45 Aligned_cols=78 Identities=19% Similarity=0.162 Sum_probs=51.8
Q ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHH---------HhcC--CCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcc
Q 048673 78 YKLSAYFSARNISDLPLDLILPIIVLVIIC---------VMVG--LRPSYIAFSQNMLTVFLCI-LAAQGLGLIIGVAFM 145 (243)
Q Consensus 78 y~~~~y~lak~~~~~~~~~~~~~~~~~i~y---------~~~g--l~~~~~~f~~~~~~~~l~~-l~~~~lg~~is~~~~ 145 (243)
-|+..+..||++.-....+.+..+.....+ ...+ +......+..+....++.. +...+++.++++.++
T Consensus 227 vSr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~l~a~l~~~a~ 306 (407)
T COG1668 227 VSRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAGTGLALLPAYLLLFALSLFLLGLLLYAALAAFLGAMAG 306 (407)
T ss_pred cChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 488899999999998888888666665552 1111 1222233334444444443 444558999999999
Q ss_pred cHHHHHHHHH
Q 048673 146 DVKKAKILAS 155 (243)
Q Consensus 146 ~~~~a~~~~~ 155 (243)
+.+.|+....
T Consensus 307 ~~k~aq~~~~ 316 (407)
T COG1668 307 SIKEAQTLIS 316 (407)
T ss_pred CHHHHHHHhh
Confidence 9999988777
No 36
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=93.70 E-value=2.2 Score=33.63 Aligned_cols=86 Identities=23% Similarity=0.244 Sum_probs=48.5
Q ss_pred HHHHhcCCC--------cchHHHHHHHHHHHhhHHHHHHHHHHHHH---HHhcCC-CCcHHH----HHHHHHHHHHHHHH
Q 048673 69 LAEERSVDM--------YKLSAYFSARNISDLPLDLILPIIVLVII---CVMVGL-RPSYIA----FSQNMLTVFLCILA 132 (243)
Q Consensus 69 ~~rE~~~~~--------y~~~~y~lak~~~~~~~~~~~~~~~~~i~---y~~~gl-~~~~~~----f~~~~~~~~l~~l~ 132 (243)
+.+|+++|. .++..++.+|.++......+..++...+. ....+. +.+... .....+..+.....
T Consensus 70 ~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (232)
T PF12730_consen 70 FSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLSLF 149 (232)
T ss_pred HHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHHHH
Confidence 445666655 37889999999998776665555533332 233332 223222 22344444444455
Q ss_pred HHHHHHHHHHhcccHHHHHHHHH
Q 048673 133 AQGLGLIIGVAFMDVKKAKILAS 155 (243)
Q Consensus 133 ~~~lg~~is~~~~~~~~a~~~~~ 155 (243)
...+ .+++...+|...+..+..
T Consensus 150 ~~~~-~~i~~~~~~~~~~i~~~~ 171 (232)
T PF12730_consen 150 ISLL-LFISSLFRNSIVAIIISI 171 (232)
T ss_pred HHHH-HHHHHHHhhHHHHHHHHH
Confidence 5555 788888887665544333
No 37
>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.42 E-value=3.7 Score=33.64 Aligned_cols=147 Identities=14% Similarity=0.187 Sum_probs=88.6
Q ss_pred HHHhcCCC--------cchHHHHHHHHHHHhhHHHHHHHHHHHHHHH---hcCCCCcH--HHHHHHHHHHHHHHHHHHHH
Q 048673 70 AEERSVDM--------YKLSAYFSARNISDLPLDLILPIIVLVIICV---MVGLRPSY--IAFSQNMLTVFLCILAAQGL 136 (243)
Q Consensus 70 ~rE~~~~~--------y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~---~~gl~~~~--~~f~~~~~~~~l~~l~~~~l 136 (243)
.-|+++|. +++...+++|...-+....+.+++....++. ..|...+. ...+.....-++.++...++
T Consensus 76 ~~Ehk~n~W~~ll~lPv~r~~~YlsK~~~vf~L~~l~~li~~~~i~~~gv~~g~~~s~~~~~~~~~~~~gll~alpl~~l 155 (239)
T COG4200 76 SVEHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAAAFTLLILGLLLALPLVAL 155 (239)
T ss_pred HHHhcCCCchhhheeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34666666 3677788999998877766666555544433 44544432 23445555566667777778
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCCCchHHHHHHHhhchhhhhhhhhhccccCCCCCCcccccccchHHHH
Q 048673 137 GLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFIRELRIDHSGLEV 216 (243)
Q Consensus 137 g~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p~mp~~~~wi~~isp~~y~~~~~l~~~f~~~~~~~~g~~~~~~~~~~ 216 (243)
=...+...+|...|..++... .+.+..+- ++.|+|+-| -+|.. ...+. -.+...++
T Consensus 156 Q~wLsm~fknf~~al~igI~l-~a~fva~~---~s~~~~~PW---~~pi~-~~~~~----------------~l~v~~~i 211 (239)
T COG4200 156 QFWLSMRFKNFAVALVIGIFL-PALFVASA---ESLPVWLPW---ASPIL-PMFSG----------------SLSVETGI 211 (239)
T ss_pred HHHHHHHHHhhhHhHHHHHhH-HHHHHHhc---cccCccccc---hhhhh-hhhcc----------------ccccchhH
Confidence 888888899998888887766 22222211 156665433 33441 11111 11122356
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 048673 217 WAMMPMIIGYRLVAYLSLRRMKIV 240 (243)
Q Consensus 217 ~~L~~~~i~~~~la~~~L~~~~~~ 240 (243)
..+...++++.+.+.+.++|++..
T Consensus 212 ~~~~v~~ll~~l~s~l~~~r~~v~ 235 (239)
T COG4200 212 LFLGVLALLFLLSSFLFFKRKKVS 235 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Confidence 777777778888887777776643
No 38
>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=88.73 E-value=11 Score=30.43 Aligned_cols=94 Identities=15% Similarity=0.209 Sum_probs=66.2
Q ss_pred hhHHHHHHhcCCCc--------chHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 048673 65 ERAMLAEERSVDMY--------KLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGL 136 (243)
Q Consensus 65 er~v~~rE~~~~~y--------~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~l 136 (243)
||. |++|+++|.- ....-+++|.+.+...+.+.-++.+-+.+.+.+.+. +.+....+..++.+.....+
T Consensus 68 ~rl-F~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~~~~--~~~~~~~ltLllGtp~ls~~ 144 (221)
T COG2386 68 ERL-FRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLNMDV--GALGALALTLLLGTPALSFL 144 (221)
T ss_pred HHH-HHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCH--hHHHHHHHHHHhcchHHHHH
Confidence 443 8999999984 455667899999988887777777778888888765 55666666667777777777
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHH
Q 048673 137 GLIIGVAFMDVKKAKILASIVLMTS 161 (243)
Q Consensus 137 g~~is~~~~~~~~a~~~~~~~~~~~ 161 (243)
|-..+++.-+....-.+.+++..|.
T Consensus 145 ga~gaALtv~lrrgglLl~vlvlPl 169 (221)
T COG2386 145 GAVGAALTVGLRRGGLLLSVLVLPL 169 (221)
T ss_pred HHHHHHHHhcCccCCchhhHHHHHH
Confidence 7777776666555555555554443
No 39
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=85.95 E-value=18 Score=29.87 Aligned_cols=69 Identities=12% Similarity=0.049 Sum_probs=46.6
Q ss_pred cchHHHHHHHHHHHhhHHHHHHHHHHHHHH-----HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 048673 78 YKLSAYFSARNISDLPLDLILPIIVLVIIC-----VMVGLRPSYIAFSQNMLTVFLCILAAQGLGLIIGVAFMD 146 (243)
Q Consensus 78 y~~~~y~lak~~~~~~~~~~~~~~~~~i~y-----~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~is~~~~~ 146 (243)
.+...+++||.+......++..++...+.. ...+-+.+...+....+...+..+....+.++++...++
T Consensus 85 ~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~~l~l~ls~~~g~ 158 (248)
T TIGR03733 85 KSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYIIHLFVSFAFGM 158 (248)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 377889999999887766665554322222 111223344566667777788888999999999988875
No 40
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=85.63 E-value=14 Score=36.68 Aligned_cols=120 Identities=21% Similarity=0.144 Sum_probs=80.0
Q ss_pred hhhhHHHHHH--hcCCCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 048673 63 PQERAMLAEE--RSVDMYKLSAYFSARNISDLPLDLILPIIVLVIICVMVGLRPSYIAFSQNMLTVFLCILAAQGLGLII 140 (243)
Q Consensus 63 ~~er~v~~rE--~~~~~y~~~~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~~~~~~f~~~~~~~~l~~l~~~~lg~~i 140 (243)
..||..-.|. .-.|+ ++.+|.++..+.+....++.......+.+..- .....+.........++......+.+..
T Consensus 320 i~e~~~~~~~~~~i~G~-~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~--~~~~~~~~~~~~~~~l~~~s~i~l~y~~ 396 (885)
T KOG0059|consen 320 ILERQQRLRHQQLIAGL-SPSTYWLFALVWDLLLYLLILLILLIFVLIFG--FFAGNNTVIILLLLLLYIRSAIPLTYIL 396 (885)
T ss_pred HHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhheee--cccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555443 66677 78899999999999888777776666654432 2223455666777788888889999999
Q ss_pred HHhcccHHHHHHHHHHHHHHHHHhhhhCC---C---CchHHHHHHHhhchh
Q 048673 141 GVAFMDVKKAKILASIVLMTSMLSGGFFI---Q---KGPFFMSWLRYISFN 185 (243)
Q Consensus 141 s~~~~~~~~a~~~~~~~~~~~~l~sG~~~---p---~mp~~~~wi~~isp~ 185 (243)
+.+++....+.....+......+...+.+ + .-|....+...+.|.
T Consensus 397 s~~f~~~~~~~v~~~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 447 (885)
T KOG0059|consen 397 SFIFSKESTASVILSIYNLISGLLVFFAVFILQSFANGRTGDIFSMILVPG 447 (885)
T ss_pred HHHhcCCcCceeehhhHHHHHHHHHHHHHhhhhhcccccHHHHHHHHHhhh
Confidence 99999999888876665554444222211 1 445455555555554
No 41
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=82.03 E-value=2.4 Score=27.58 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=29.3
Q ss_pred ccccccc--hHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048673 205 RELRIDH--SGLEVWAMMPMIIGYRLVAYLSLRRMKIV 240 (243)
Q Consensus 205 ~g~~~~~--~~~~~~~L~~~~i~~~~la~~~L~~~~~~ 240 (243)
+|...++ .|..+++|+++.++|.++..++|.+.+.-
T Consensus 20 rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~ 57 (65)
T PF08370_consen 20 RGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPL 57 (65)
T ss_pred cCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 3444443 58899999999999999999999998743
No 42
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=70.67 E-value=7.9 Score=28.58 Aligned_cols=29 Identities=24% Similarity=0.096 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048673 212 SGLEVWAMMPMIIGYRLVAYLSLRRMKIV 240 (243)
Q Consensus 212 ~~~~~~~L~~~~i~~~~la~~~L~~~~~~ 240 (243)
.+..++++++.+....+++|++.|++||.
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35567777777666666666655555544
No 43
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=57.29 E-value=1.3e+02 Score=27.33 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=18.1
Q ss_pred CChhhHHhhhc-CCccHHHHHHHHHHHHH
Q 048673 27 NPAEFPIDLAN-GNASLLFFISVFWGFFP 54 (243)
Q Consensus 27 npad~~~~~~~-~~~g~lf~~~~~~~~~~ 54 (243)
+|.|+|...-+ .+.|++|..+++.+++-
T Consensus 286 ~Pvd~Y~~~~Ra~KYgiLFI~LTF~~ffl 314 (430)
T PF06123_consen 286 EPVDHYQKSERAVKYGILFIGLTFLAFFL 314 (430)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555553322 23599999999988764
No 44
>PRK11715 inner membrane protein; Provisional
Probab=49.66 E-value=1.9e+02 Score=26.42 Aligned_cols=29 Identities=21% Similarity=0.356 Sum_probs=19.1
Q ss_pred CCChhhHHhhhc-CCccHHHHHHHHHHHHH
Q 048673 26 MNPAEFPIDLAN-GNASLLFFISVFWGFFP 54 (243)
Q Consensus 26 ~npad~~~~~~~-~~~g~lf~~~~~~~~~~ 54 (243)
.+|.|.|...-+ .+.|++|..+++.+++-
T Consensus 291 ~~PVd~Y~~~~RA~KYgiLFI~LTF~~fFl 320 (436)
T PRK11715 291 IDPVDQYQKTERAVKYAILFIALTFAAFFL 320 (436)
T ss_pred eccccHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 355666664322 24699999999888764
No 45
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=48.93 E-value=35 Score=20.52 Aligned_cols=27 Identities=4% Similarity=-0.042 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048673 214 LEVWAMMPMIIGYRLVAYLSLRRMKIV 240 (243)
Q Consensus 214 ~~~~~L~~~~i~~~~la~~~L~~~~~~ 240 (243)
...+.++.+.++|..+.++..+.++|+
T Consensus 10 ~~~~~~v~~~~~F~gi~~w~~~~~~k~ 36 (49)
T PF05545_consen 10 ARSIGTVLFFVFFIGIVIWAYRPRNKK 36 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccchh
Confidence 345667777777777777777666544
No 46
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=45.39 E-value=27 Score=19.79 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=26.0
Q ss_pred cchHHHHHHhcCCCCCCCCCChhhHHhhhcC
Q 048673 8 ASEAVDYFSSIGCSPCIAMNPAEFPIDLANG 38 (243)
Q Consensus 8 ~~~~~~~F~~~g~~~p~~~npad~~~~~~~~ 38 (243)
-++..+|.++.|.+.|+..+.-|.+++.+..
T Consensus 6 ~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 6 DSDLKSWLKSHGIPVPKSAKTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH
Confidence 4678899999999999887788988887754
No 47
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=45.16 E-value=26 Score=30.09 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhhhhh
Q 048673 226 YRLVAYLSLRRMKIVT 241 (243)
Q Consensus 226 ~~~la~~~L~~~~~~~ 241 (243)
..++-|+.||+|||+|
T Consensus 271 IMvIIYLILRYRRKKK 286 (299)
T PF02009_consen 271 IMVIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3555677888888664
No 48
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=38.79 E-value=55 Score=19.77 Aligned_cols=27 Identities=11% Similarity=0.246 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048673 214 LEVWAMMPMIIGYRLVAYLSLRRMKIV 240 (243)
Q Consensus 214 ~~~~~L~~~~i~~~~la~~~L~~~~~~ 240 (243)
.+.+.|+.+.++|..+..+..+.++|+
T Consensus 11 a~~~~l~~~~~~Figiv~wa~~p~~k~ 37 (48)
T cd01324 11 ADSWGLLYLALFFLGVVVWAFRPGRKK 37 (48)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 456677777788887777777766655
No 49
>PTZ00046 rifin; Provisional
Probab=35.22 E-value=44 Score=29.47 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhhhhh
Q 048673 227 RLVAYLSLRRMKIVT 241 (243)
Q Consensus 227 ~~la~~~L~~~~~~~ 241 (243)
.++-|+.||+|||+|
T Consensus 331 MvIIYLILRYRRKKK 345 (358)
T PTZ00046 331 MVIIYLILRYRRKKK 345 (358)
T ss_pred HHHHHHHHHhhhcch
Confidence 466788999999875
No 50
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=35.21 E-value=44 Score=29.37 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhhhhh
Q 048673 227 RLVAYLSLRRMKIVT 241 (243)
Q Consensus 227 ~~la~~~L~~~~~~~ 241 (243)
.+.-|+.||+|||+|
T Consensus 326 MvIIYLILRYRRKKK 340 (353)
T TIGR01477 326 MVIIYLILRYRRKKK 340 (353)
T ss_pred HHHHHHHHHhhhcch
Confidence 466788999999875
No 51
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=30.03 E-value=70 Score=24.31 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 048673 215 EVWAMMPMIIGYRLVAYLSLRRMKIVT 241 (243)
Q Consensus 215 ~~~~L~~~~i~~~~la~~~L~~~~~~~ 241 (243)
-++.+++.++++.++.+++-+|+||.-
T Consensus 34 ILiaIvVliiiiivli~lcssRKkKaa 60 (189)
T PF05568_consen 34 ILIAIVVLIIIIIVLIYLCSSRKKKAA 60 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 355566667777788887777776653
No 52
>PF04387 PTPLA: Protein tyrosine phosphatase-like protein, PTPLA; InterPro: IPR007482 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This family includes the mammalian protein tyrosine phosphatase-like protein, PTPLA. A significant variation of PTPLA from other protein tyrosine phosphatases is the presence of proline instead of catalytic arginine at the active site. It is thought that PTPLA proteins have a role in the development, differentiation, and maintenance of a number of tissue types [].
Probab=27.89 E-value=1.6e+02 Score=22.81 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=17.7
Q ss_pred CchHHHHHHHhhchhhhhhhhhhc
Q 048673 171 KGPFFMSWLRYISFNNYDSYQHHC 194 (243)
Q Consensus 171 ~mp~~~~wi~~isp~~y~~~~~l~ 194 (243)
.-|.++.|++|-.+.-=|+.+...
T Consensus 75 ~~p~~L~WLRYs~FivLYPlG~~~ 98 (164)
T PF04387_consen 75 IVPYWLTWLRYSAFIVLYPLGILS 98 (164)
T ss_pred CCchHHHHHHHhhHhhccchHHHH
Confidence 458999999998776545666553
No 53
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=25.29 E-value=1.2e+02 Score=20.44 Aligned_cols=11 Identities=36% Similarity=0.211 Sum_probs=6.8
Q ss_pred hchhhhhhhhh
Q 048673 182 ISFNNYDSYQH 192 (243)
Q Consensus 182 isp~~y~~~~~ 192 (243)
+||.-||.+++
T Consensus 24 iSPviywSWDt 34 (84)
T PRK13718 24 ISPVIYWSWDT 34 (84)
T ss_pred ecceEEEEehh
Confidence 56666666655
No 54
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=25.07 E-value=5.4e+02 Score=23.65 Aligned_cols=92 Identities=10% Similarity=0.095 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHH-HHHHHHHhhhhCCCCchHHHHHHHhhchhhhhhhhhhccccCCCCCCc
Q 048673 126 VFLCILAAQGLGLIIGVAFMDVKKAKILASI-VLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQHHCSSDSCSPPFI 204 (243)
Q Consensus 126 ~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~-~~~~~~l~sG~~~p~mp~~~~wi~~isp~~y~~~~~l~~~f~~~~~~~ 204 (243)
.+...+...++...+.-+.|.... ..-..+ +...+..++| +. ++|+ |.-.+||+.| .-+.
T Consensus 441 ~lvav~f~l~ia~ll~GLaPr~t~-laWlyl~~~~fvtyLg~-Ll-slpe---wl~nlSp~~h-ip~l------------ 501 (536)
T COG3559 441 QLVAVWFLLAIAVLLFGLAPRFTP-LAWLYLIVGFFVTYLGG-LL-SLPE---WLLNLSPFAH-IPRL------------ 501 (536)
T ss_pred HHHHHHHHHHHHHHHhccchhhhh-hHHHHHHHHHHHHHHHH-hc-ccHH---HHhcCCcccc-CccC------------
Confidence 333444445555555556664332 222222 3333334444 22 5665 4778888865 2222
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 048673 205 RELRIDHSGLEVWAMMPMIIGYRLVAYLSLRRMK 238 (243)
Q Consensus 205 ~g~~~~~~~~~~~~L~~~~i~~~~la~~~L~~~~ 238 (243)
.+.|. .-..++.+.+..++...++...-|||+
T Consensus 502 pved~--n~~pll~l~ii~vaL~~lGf~~yrRRd 533 (536)
T COG3559 502 PVEDF--NAVPLLWLLIIDVALITLGFMAYRRRD 533 (536)
T ss_pred Ccccc--chHHHHHHHHHHHHHHHhhHHHHhhhc
Confidence 11122 223455666666777777766666654
No 55
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=24.87 E-value=5.5e+02 Score=23.63 Aligned_cols=94 Identities=14% Similarity=0.002 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhhhCCCCchHHHHHHHhhchhhhhhhhhhccccCCCC
Q 048673 122 NMLTVFLCILAAQGLGLIIGVAFMDVKKAKILASIVLMTSMLSGGFFIQKGPFFMSWLRYISFNNYDSYQHHCSSDSCSP 201 (243)
Q Consensus 122 ~~~~~~l~~l~~~~lg~~is~~~~~~~~a~~~~~~~~~~~~l~sG~~~p~mp~~~~wi~~isp~~y~~~~~l~~~f~~~~ 201 (243)
|-..+-...+...++....+.++++......++-..+-...+.==+ -+... .-++|.||..| .++. .-
T Consensus 168 fgvtl~~tg~~~~avaalf~qL~~~a~~t~g~~f~llG~aflvRmi--~Dvss--~~L~WfsPlgW-~~~~--~p----- 235 (536)
T COG3559 168 FGVTLAATGMVFTAVAALFAQLSPSARFTRGVAFALLGTAFLVRMI--GDVSS--GTLSWFSPLGW-SLQV--RP----- 235 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccchhHHHHHHHHHHHHHH--hcccc--cccccccCccc-eEEe--ee-----
Confidence 4444555666667777777777776554444333333222221000 11111 34789999988 4443 01
Q ss_pred CCcccccccchHHHHHHHHHHHHHHHHHHHHH
Q 048673 202 PFIRELRIDHSGLEVWAMMPMIIGYRLVAYLS 233 (243)
Q Consensus 202 ~~~~g~~~~~~~~~~~~L~~~~i~~~~la~~~ 233 (243)
-.++.|...+..++.+.+...++|..
T Consensus 236 ------yv~e~Wl~~llt~~~aa~l~gvAy~L 261 (536)
T COG3559 236 ------YVGERWLVLLLTLATAAVLTGVAYRL 261 (536)
T ss_pred ------cccchHHHHHHHHHHHHHHHHHHhee
Confidence 13467888878887777777777644
No 56
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=24.15 E-value=3e+02 Score=21.14 Aligned_cols=23 Identities=26% Similarity=0.223 Sum_probs=12.6
Q ss_pred HHHhcCCCcchHHHHHHHHHHHhhHHH
Q 048673 70 AEERSVDMYKLSAYFSARNISDLPLDL 96 (243)
Q Consensus 70 ~rE~~~~~y~~~~y~lak~~~~~~~~~ 96 (243)
++|+++|-= .+-.+.+.+-|..+
T Consensus 17 ~~E~RDnkp----rFs~~Fi~~HP~L~ 39 (155)
T PF10777_consen 17 REEKRDNKP----RFSSSFIRNHPYLC 39 (155)
T ss_pred HHhccCCCc----cccHHHHHhCcHHH
Confidence 567777662 33355555555543
No 57
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=23.56 E-value=1.6e+02 Score=19.74 Aligned_cols=20 Identities=10% Similarity=0.006 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhhhhhc
Q 048673 223 IIGYRLVAYLSLRRMKIVTV 242 (243)
Q Consensus 223 ~i~~~~la~~~L~~~~~~~~ 242 (243)
.++|....++.+++++|++.
T Consensus 13 f~ifVap~WL~lHY~sk~~~ 32 (75)
T PF06667_consen 13 FMIFVAPIWLILHYRSKWKS 32 (75)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 34444555667777776643
No 58
>PF15203 TMEM95: TMEM95 family
Probab=23.04 E-value=55 Score=24.11 Aligned_cols=24 Identities=21% Similarity=0.661 Sum_probs=21.1
Q ss_pred CchHHHHHHHhhchhhhhhhhhhcc
Q 048673 171 KGPFFMSWLRYISFNNYDSYQHHCS 195 (243)
Q Consensus 171 ~mp~~~~wi~~isp~~y~~~~~l~~ 195 (243)
++|.+|+|+...--..| .-|+++.
T Consensus 67 ~lP~Yw~WL~ktklP~Y-tREalca 90 (152)
T PF15203_consen 67 SLPLYWQWLQKTKLPQY-TREALCA 90 (152)
T ss_pred cCcHHHHHHHhcccchh-hhhhcCC
Confidence 79999999999877767 8999986
No 59
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=22.73 E-value=68 Score=18.92 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=15.6
Q ss_pred CcchHHHHHHhc----CCCCCCCCC
Q 048673 7 KASEAVDYFSSI----GCSPCIAMN 27 (243)
Q Consensus 7 ~~~~~~~~F~~~----g~~~p~~~n 27 (243)
+-+++.+|++.+ |+.||.-.+
T Consensus 2 ~e~~c~~~l~~~RW~~g~~CP~Cg~ 26 (46)
T PF12760_consen 2 DEEACREYLEEIRWPDGFVCPHCGS 26 (46)
T ss_pred CHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 346788999988 888995443
No 60
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=22.37 E-value=1e+02 Score=26.23 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 048673 214 LEVWAMMPMIIGYRLVAYLSLRRMK 238 (243)
Q Consensus 214 ~~~~~L~~~~i~~~~la~~~L~~~~ 238 (243)
...++|++..+++.+|..+.-|||+
T Consensus 263 iaalvllil~vvliiLYiWlyrrRK 287 (295)
T TIGR01478 263 IAALVLIILTVVLIILYIWLYRRRK 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777777777666655444443
No 61
>PF11100 TrbE: Conjugal transfer protein TrbE ; InterPro: IPR020150 TrbE is encoded by the F-plasmid and is located between traN and traF. The product of trbE is a small, integral, inner membrane protein. Mutation of trbE by insertional mutagenesis suggests that TrbE is not essential for F transfer from Escherichia coli (strain K12) under standard mating conditions [].
Probab=21.61 E-value=1.9e+02 Score=18.62 Aligned_cols=12 Identities=33% Similarity=0.149 Sum_probs=7.7
Q ss_pred hhchhhhhhhhh
Q 048673 181 YISFNNYDSYQH 192 (243)
Q Consensus 181 ~isp~~y~~~~~ 192 (243)
-+||.-|+.+++
T Consensus 15 viSPvIywSWDa 26 (66)
T PF11100_consen 15 VISPVIYWSWDA 26 (66)
T ss_pred eecceEEEEecc
Confidence 467776666666
No 62
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=21.56 E-value=2e+02 Score=19.88 Aligned_cols=7 Identities=0% Similarity=0.097 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 048673 216 VWAMMPM 222 (243)
Q Consensus 216 ~~~L~~~ 222 (243)
+++..++
T Consensus 37 ~lvI~~i 43 (94)
T PF05393_consen 37 FLVICGI 43 (94)
T ss_pred HHHHHHH
Confidence 3333333
No 63
>PTZ00370 STEVOR; Provisional
Probab=21.52 E-value=1.1e+02 Score=26.10 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 048673 214 LEVWAMMPMIIGYRLVAYLSLRRMK 238 (243)
Q Consensus 214 ~~~~~L~~~~i~~~~la~~~L~~~~ 238 (243)
...++|++..+++.+|..+.-|||+
T Consensus 259 iaalvllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 259 IAALVLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566777777777766655544444
No 64
>PF02613 Nitrate_red_del: Nitrate reductase delta subunit; InterPro: IPR020945 This entry represents a family of proteins which are involved in enzyme assembly and/or maturation. The TorD protein, after which this family is named, is involved in the maturation of the the trimethylamine N-oxide reductase TorA in Escherichia coli []. TorA is a molybdenum-containing enzyme which requires the the insertion of a bis(molybdopterin guanine dinucleotide) molybdenum (bis(MGD)Mo) cofactor in its catalytic site to be active and translocated to the periplasm. TorD acts as a chaperone, binding to apoTorA and promoting efficient incorporation of the cofactor into the protein. Other proteins in this entry include: Nitrate reductase delta subunit. This subunit is not part of the nitrate reductase enzyme but is most likely needed for assembly of the multi-subunit enzyme complex []. In the absence of the delta subunit, the core alpha-beta enzyme complex is unstable. Dimethyl sulphide dehydrogenase protein DdhD. This protein is thought to function as chaperone protein in the assembly of an active dimethyl sulphide dehydrogenase DdhABC []. ; PDB: 2IDG_C 2XOL_B 2Y6Y_A 2YJM_A 3CW0_B 3EFP_B 1N1C_B 2O9X_A 1S9U_A.
Probab=21.39 E-value=49 Score=24.41 Aligned_cols=28 Identities=14% Similarity=0.274 Sum_probs=19.1
Q ss_pred cCcchHHHHHHhcCCCCCCC-CCChhhHH
Q 048673 6 RKASEAVDYFSSIGCSPCIA-MNPAEFPI 33 (243)
Q Consensus 6 G~~~~~~~~F~~~g~~~p~~-~npad~~~ 33 (243)
.+..++.+++++.|+..+.. ..|+||+-
T Consensus 65 ~~~~~l~~~y~~~Gl~~~~~~~e~~DHi~ 93 (136)
T PF02613_consen 65 EALAELREFYRQAGLEPNEEFNEPPDHIG 93 (136)
T ss_dssp HHHHHHHHHHHHTT----SSTTSGTTBHH
T ss_pred HHHHHHHHHHHHCCCccCCCCCCCchHHH
Confidence 35578999999999999964 78889763
No 65
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=20.73 E-value=2.3e+02 Score=18.83 Aligned_cols=28 Identities=7% Similarity=-0.002 Sum_probs=17.8
Q ss_pred HHhcccHHHHHHHHHHHHHHHHHhhhhC
Q 048673 141 GVAFMDVKKAKILASIVLMTSMLSGGFF 168 (243)
Q Consensus 141 s~~~~~~~~a~~~~~~~~~~~~l~sG~~ 168 (243)
-...+|+-.-..-..+.+.|+++.||++
T Consensus 13 ~~vAkdP~~Fl~~vll~LtPlfiisa~l 40 (74)
T PF15086_consen 13 EWVAKDPYEFLTTVLLILTPLFIISAVL 40 (74)
T ss_pred HHHHcChHHHHHHHHHHHhHHHHHHHHH
Confidence 3444666666666666677777777764
No 66
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.42 E-value=1.7e+02 Score=18.64 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048673 215 EVWAMMPMIIGYRLVAYLSLRRMKIV 240 (243)
Q Consensus 215 ~~~~L~~~~i~~~~la~~~L~~~~~~ 240 (243)
+-+.++.+.++|...-+.+++..+|.
T Consensus 11 ~a~~t~~~~l~fiavi~~ayr~~~K~ 36 (60)
T COG4736 11 DAWGTIAFTLFFIAVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchh
Confidence 34556667777777777777666654
Done!