Query 048673
Match_columns 243
No_of_seqs 142 out of 1596
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 20:51:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/048673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/048673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 40.7 72 0.0024 20.6 5.4 52 19-74 1-52 (79)
2 2l2t_A Receptor tyrosine-prote 29.9 63 0.0021 18.4 3.2 12 229-240 29-40 (44)
3 2ks1_B Epidermal growth factor 23.3 89 0.003 17.7 3.0 21 219-240 21-41 (44)
4 2h1z_A Hybrid atracotoxin; bet 15.4 61 0.0021 17.6 1.1 11 19-29 7-17 (39)
5 2jwa_A Receptor tyrosine-prote 13.1 2.1E+02 0.0073 16.1 3.0 9 232-240 33-41 (44)
6 2l9u_A Receptor tyrosine-prote 12.4 2E+02 0.0067 15.3 3.7 26 215-240 9-34 (40)
7 2nwl_A GLTPH, glutamate sympor 11.7 6.9E+02 0.024 21.3 9.3 64 82-145 43-108 (422)
8 2r18_A Capsid assembly protein 11.3 1.7E+02 0.0058 20.8 2.7 31 4-34 44-74 (139)
9 3zed_D Capsid protein VP3; vir 9.9 1.5E+02 0.0052 23.0 2.2 31 4-34 114-144 (242)
10 2ija_A Arylamine N-acetyltrans 9.3 2.4E+02 0.0083 22.8 3.4 30 6-35 3-32 (295)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=40.73 E-value=72 Score=20.58 Aligned_cols=52 Identities=15% Similarity=0.147 Sum_probs=24.6
Q ss_pred CCCCCCCCCChhhHHhhhcCCccHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHhc
Q 048673 19 GCSPCIAMNPAEFPIDLANGNASLLFFISVFWGFFPLFTATFTFPQERAMLAEERS 74 (243)
Q Consensus 19 g~~~p~~~npad~~~~~~~~~~g~lf~~~~~~~~~~~~~~i~~~~~er~v~~rE~~ 74 (243)
|-.||+.-|.+--..-++. |++...++....--....+.. -+|.+-|.+|++
T Consensus 1 ~~~Cp~~~n~~~Iv~gvi~---gilliGllllliwk~~~~i~D-rrE~~kFEkE~~ 52 (79)
T 2knc_B 1 GAMGSKGPDILVVLLSVMG---AILLIGLAALLIWKLLITIHD-RKEFAKFEEERA 52 (79)
T ss_dssp CCSSCSSSCSHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CCCCCCCCCchhhHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4578877777665555444 444443333222221222221 135555555655
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=29.86 E-value=63 Score=18.39 Aligned_cols=12 Identities=25% Similarity=0.213 Sum_probs=5.2
Q ss_pred HHHHHHHhhhhh
Q 048673 229 VAYLSLRRMKIV 240 (243)
Q Consensus 229 la~~~L~~~~~~ 240 (243)
+.++.+|+++++
T Consensus 29 ~~~~~~RRRr~~ 40 (44)
T 2l2t_A 29 TFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHTTCSS
T ss_pred HHHHHhhhhhhh
Confidence 334445554433
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=23.26 E-value=89 Score=17.72 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 048673 219 MMPMIIGYRLVAYLSLRRMKIV 240 (243)
Q Consensus 219 L~~~~i~~~~la~~~L~~~~~~ 240 (243)
+++..++. ++.++.+|+++++
T Consensus 21 v~~~~ii~-~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 21 LLLLLVVA-LGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHH-HHHHHHHHTTTCC
T ss_pred HHHHHHHH-HHHHHHhhhhHhh
Confidence 44433333 3444455555544
No 4
>2h1z_A Hybrid atracotoxin; beta-hairpin, cystine knot; NMR {Hadronyche versuta}
Probab=15.44 E-value=61 Score=17.61 Aligned_cols=11 Identities=9% Similarity=0.178 Sum_probs=8.6
Q ss_pred CCCCCCCCCCh
Q 048673 19 GCSPCIAMNPA 29 (243)
Q Consensus 19 g~~~p~~~npa 29 (243)
|-|||.+++|.
T Consensus 7 gQPCpyN~~pC 17 (39)
T 2h1z_A 7 DQPCSLNTQPC 17 (39)
T ss_dssp TSBCCTTSCCB
T ss_pred CCCCCCCcccc
Confidence 77899888864
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=13.11 E-value=2.1e+02 Score=16.15 Aligned_cols=9 Identities=11% Similarity=0.265 Sum_probs=3.8
Q ss_pred HHHHhhhhh
Q 048673 232 LSLRRMKIV 240 (243)
Q Consensus 232 ~~L~~~~~~ 240 (243)
+.+||++++
T Consensus 33 ~~~RRR~~~ 41 (44)
T 2jwa_A 33 ILIKRRQQK 41 (44)
T ss_dssp HHHHHHCSC
T ss_pred hheehhhhh
Confidence 344444433
No 6
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=12.36 E-value=2e+02 Score=15.34 Aligned_cols=26 Identities=4% Similarity=-0.037 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 048673 215 EVWAMMPMIIGYRLVAYLSLRRMKIV 240 (243)
Q Consensus 215 ~~~~L~~~~i~~~~la~~~L~~~~~~ 240 (243)
.+-+.++..++|.+++--.|-++.|+
T Consensus 9 alt~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 9 ALTVIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCceeEEEcccc
Confidence 45567778888888876666666554
No 7
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=11.73 E-value=6.9e+02 Score=21.30 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-CcHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 048673 82 AYFSARNISDLPLDLILPIIVLVIICVMVGLR-PSYIAF-SQNMLTVFLCILAAQGLGLIIGVAFM 145 (243)
Q Consensus 82 ~y~lak~~~~~~~~~~~~~~~~~i~y~~~gl~-~~~~~f-~~~~~~~~l~~l~~~~lg~~is~~~~ 145 (243)
...+++....+...++.++++..+.--..++. ...++. ...+......+..+..+|+.++.+.+
T Consensus 43 ~~~~G~lFi~llkmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~ 108 (422)
T 2nwl_A 43 VKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFN 108 (422)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34568888888899999999999999888884 445554 34444455556666677777766544
No 8
>2r18_A Capsid assembly protein VP3; helix, capsid protein, hydrolase, protease, serine protease, virion, viral protein; 2.30A {Infectious bursal disease virus} PDB: 2z7j_A
Probab=11.31 E-value=1.7e+02 Score=20.75 Aligned_cols=31 Identities=6% Similarity=0.065 Sum_probs=25.8
Q ss_pred cccCcchHHHHHHhcCCCCCCCCCChhhHHh
Q 048673 4 YSRKASEAVDYFSSIGCSPCIAMNPAEFPID 34 (243)
Q Consensus 4 Y~G~~~~~~~~F~~~g~~~p~~~npad~~~~ 34 (243)
|.||-.+=.+||...|-..+++..+-||...
T Consensus 44 yRGPsp~Q~KY~~it~~~P~pge~y~dy~~~ 74 (139)
T 2r18_A 44 HRGPSPGQLKYWQNTREIPDPNEDYLDYVHA 74 (139)
T ss_dssp SSCCCHHHHHHHHHHCSCCCTTCCCTTTTSC
T ss_pred CCCCCHHHhHHHHhhccCCCCCcchhhcccC
Confidence 7899988899999998888888777777663
No 9
>3zed_D Capsid protein VP3; viral protein, virus morphogenesis; 2.20A {Infectious pancreatic necrosis virus}
Probab=9.88 E-value=1.5e+02 Score=23.02 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=26.4
Q ss_pred cccCcchHHHHHHhcCCCCCCCCCChhhHHh
Q 048673 4 YSRKASEAVDYFSSIGCSPCIAMNPAEFPID 34 (243)
Q Consensus 4 Y~G~~~~~~~~F~~~g~~~p~~~npad~~~~ 34 (243)
|.||-.+=.+||...|-..+++..+-||...
T Consensus 114 yRGPsp~Q~KYy~itg~~P~Pge~y~dyv~~ 144 (242)
T 3zed_D 114 YRGPSPGQFKYYMITGRVPNPGEEYEDYVRK 144 (242)
T ss_pred CCCCCHHHhhHHHhcccCCCCCccHHHhhcc
Confidence 7899999999999999988888777777663
No 10
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} PDB: 2pqt_A* 2pfr_A*
Probab=9.29 E-value=2.4e+02 Score=22.76 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=19.5
Q ss_pred cCcchHHHHHHhcCCCCCCCCCChhhHHhh
Q 048673 6 RKASEAVDYFSSIGCSPCIAMNPAEFPIDL 35 (243)
Q Consensus 6 G~~~~~~~~F~~~g~~~p~~~npad~~~~~ 35 (243)
++.-+..+||+.+|++-++.....|.+-++
T Consensus 3 ~~~~~l~~Yl~RIg~~~~~~~~~l~~L~~L 32 (295)
T 2ija_A 3 GSGSDIEAYLERIGYKKSRNKLDLETLTDI 32 (295)
T ss_dssp -CCCHHHHHHHHTTCCSCCCCCSHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 456788999999999843334445554443
Done!